Your job contains 1 sequence.
>020071
MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT
TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA
DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM
VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV
KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA
HMRICDGVGSYLQLCGLLAKLSIVRETAKAV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 020071
(331 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2015233 - symbol:RFC2 "replication factor C 2"... 1488 1.5e-152 1
UNIPROTKB|P53033 - symbol:RFC2 "Replication factor C subu... 1140 1.2e-115 1
RGD|621198 - symbol:Rfc2 "replication factor C (activator... 1138 1.9e-115 1
UNIPROTKB|F6ULR2 - symbol:RFC2 "Uncharacterized protein" ... 1136 3.1e-115 1
UNIPROTKB|P35250 - symbol:RFC2 "Replication factor C subu... 1136 3.1e-115 1
UNIPROTKB|Q05B83 - symbol:RFC2 "Replication factor C subu... 1134 5.0e-115 1
MGI|MGI:1341868 - symbol:Rfc2 "replication factor C (acti... 1134 5.0e-115 1
ZFIN|ZDB-GENE-050306-29 - symbol:rfc2 "replication factor... 1105 5.9e-112 1
UNIPROTKB|E2QSU1 - symbol:RFC2 "Uncharacterized protein" ... 1054 1.5e-106 1
UNIPROTKB|I3LHX6 - symbol:RFC2 "Uncharacterized protein" ... 1041 3.6e-105 1
DICTYBASE|DDB_G0291868 - symbol:rfc2 "replication factor ... 1030 5.3e-104 1
FB|FBgn0260985 - symbol:RfC4 "Replication factor C subuni... 1023 2.9e-103 1
CGD|CAL0000922 - symbol:RFC4 species:5476 "Candida albica... 1011 5.4e-102 1
POMBASE|SPAC1687.03c - symbol:rfc4 "DNA replication facto... 1008 1.1e-101 1
SGD|S000005454 - symbol:RFC4 "Subunit of heteropentameric... 1008 1.1e-101 1
WB|WBGene00004338 - symbol:rfc-2 species:6239 "Caenorhabd... 938 3.0e-94 1
GENEDB_PFALCIPARUM|PFL2005w - symbol:PFL2005w "replicatio... 778 2.7e-77 1
UNIPROTKB|Q8I512 - symbol:PFL2005w "Replication factor C ... 778 2.7e-77 1
UNIPROTKB|H7C5P4 - symbol:RFC2 "Replication factor C subu... 617 3.1e-60 1
ZFIN|ZDB-GENE-040824-3 - symbol:rfc4 "replication factor ... 581 2.0e-56 1
ZFIN|ZDB-GENE-040907-1 - symbol:rfc5 "replication factor ... 557 7.0e-54 1
MGI|MGI:1919401 - symbol:Rfc5 "replication factor C (acti... 555 1.1e-53 1
UNIPROTKB|F1RKG3 - symbol:RFC5 "Uncharacterized protein" ... 554 1.5e-53 1
RGD|1309280 - symbol:Rfc5 "replication factor C (activato... 554 1.5e-53 1
UNIPROTKB|P40937 - symbol:RFC5 "Replication factor C subu... 551 3.0e-53 1
POMBASE|SPAC27E2.10c - symbol:rfc3 "DNA replication facto... 547 8.0e-53 1
UNIPROTKB|E2RCF4 - symbol:RFC5 "Uncharacterized protein" ... 546 1.0e-52 1
UNIPROTKB|P35249 - symbol:RFC4 "Replication factor C subu... 528 8.3e-51 1
RGD|1310142 - symbol:Rfc4 "replication factor C (activato... 528 8.3e-51 1
WB|WBGene00018409 - symbol:F44B9.8 species:6239 "Caenorha... 528 8.3e-51 1
UNIPROTKB|F1NEW1 - symbol:RFC4 "Uncharacterized protein" ... 527 1.1e-50 1
UNIPROTKB|F1NIY0 - symbol:RFC4 "Uncharacterized protein" ... 527 1.1e-50 1
UNIPROTKB|F1SFI3 - symbol:RFC4 "Uncharacterized protein" ... 527 1.1e-50 1
SGD|S000005234 - symbol:RFC3 "Subunit of heteropentameric... 523 2.8e-50 1
UNIPROTKB|E2R2M6 - symbol:RFC4 "Uncharacterized protein" ... 522 3.6e-50 1
FB|FBgn0032244 - symbol:RfC3 "Replication factor C subuni... 521 4.6e-50 1
GENEDB_PFALCIPARUM|PF14_0601 - symbol:PF14_0601 "replicat... 521 4.6e-50 1
UNIPROTKB|Q8IKK4 - symbol:PF14_0601 "Replication factor C... 521 4.6e-50 1
MGI|MGI:2146571 - symbol:Rfc4 "replication factor C (acti... 521 4.6e-50 1
UNIPROTKB|Q32PI3 - symbol:RFC5 "Uncharacterized protein" ... 517 1.2e-49 1
TAIR|locus:2204710 - symbol:RFC3 "replication factor C su... 516 1.5e-49 1
UNIPROTKB|C9JZI1 - symbol:RFC4 "Replication factor C subu... 477 2.6e-49 2
DICTYBASE|DDB_G0286027 - symbol:rfc4 "replication factor ... 513 3.2e-49 1
UNIPROTKB|J9NUF8 - symbol:RFC5 "Uncharacterized protein" ... 512 4.1e-49 1
FB|FBgn0030871 - symbol:CG8142 species:7227 "Drosophila m... 510 6.7e-49 1
ASPGD|ASPL0000017750 - symbol:AN8064 species:162425 "Emer... 465 1.1e-48 2
DICTYBASE|DDB_G0282235 - symbol:rfc5 "replication factor ... 506 1.8e-48 1
UNIPROTKB|Q29RS9 - symbol:RFC4 "Uncharacterized protein" ... 474 2.3e-48 2
GENEDB_PFALCIPARUM|PFB0840w - symbol:PFB0840w "replicatio... 502 4.7e-48 1
UNIPROTKB|O96260 - symbol:PFB0840w "Replication factor C,... 502 4.7e-48 1
SGD|S000003829 - symbol:RFC2 "Subunit of heteropentameric... 500 7.7e-48 1
POMBASE|SPAC23D3.02 - symbol:rfc2 "DNA replication factor... 486 2.3e-46 1
CGD|CAL0002015 - symbol:RFC2 species:5476 "Candida albica... 456 3.5e-43 1
CGD|CAL0003213 - symbol:RCF3 species:5476 "Candida albica... 447 3.2e-42 1
ASPGD|ASPL0000039105 - symbol:AN2969 species:162425 "Emer... 443 8.4e-42 1
UNIPROTKB|C9J8M3 - symbol:RFC4 "Replication factor C subu... 423 1.1e-39 1
RGD|1593197 - symbol:LOC367042 "similar to Activator 1 37... 416 6.1e-39 1
UNIPROTKB|F8W9B4 - symbol:RFC5 "Replication factor C subu... 413 1.3e-38 1
WB|WBGene00004340 - symbol:rfc-4 species:6239 "Caenorhabd... 378 6.5e-35 1
UNIPROTKB|P53016 - symbol:rfc-4 "Replication factor C sub... 378 6.5e-35 1
UNIPROTKB|C9JTT7 - symbol:RFC4 "Replication factor C subu... 318 1.5e-28 1
WB|WBGene00004339 - symbol:rfc-3 species:6239 "Caenorhabd... 235 8.5e-27 2
UNIPROTKB|Q18547 - symbol:rfc-3 "Protein RFC-3" species:6... 235 8.5e-27 2
ASPGD|ASPL0000001589 - symbol:AN6300 species:162425 "Emer... 217 3.0e-24 2
TAIR|locus:2180315 - symbol:EMB2775 "EMBRYO DEFECTIVE 277... 213 3.5e-24 2
DICTYBASE|DDB_G0293702 - symbol:rfc3 "replication factor ... 204 4.5e-24 2
ZFIN|ZDB-GENE-020809-3 - symbol:rfc3 "replication factor ... 203 5.3e-23 2
MGI|MGI:1916513 - symbol:Rfc3 "replication factor C (acti... 191 4.1e-21 2
UNIPROTKB|Q2TBV1 - symbol:RFC3 "Replication factor C subu... 193 4.4e-21 2
RGD|1306832 - symbol:Rfc3 "replication factor C (activato... 190 5.5e-21 2
UNIPROTKB|F1RSR4 - symbol:RFC3 "Uncharacterized protein" ... 185 5.2e-20 2
UNIPROTKB|E2R7L0 - symbol:RFC3 "Uncharacterized protein" ... 185 8.4e-20 2
UNIPROTKB|P40938 - symbol:RFC3 "Replication factor C subu... 185 8.4e-20 2
FB|FBgn0028700 - symbol:RfC38 "Replication factor C 38kD ... 183 1.0e-19 2
SGD|S000000291 - symbol:RFC5 "Subunit of heteropentameric... 186 1.2e-19 2
CGD|CAL0004366 - symbol:RFC5 species:5476 "Candida albica... 178 1.4e-19 2
POMBASE|SPBC83.14c - symbol:rfc5 "DNA replication factor ... 186 2.6e-19 2
UNIPROTKB|C9JXZ7 - symbol:RFC4 "Replication factor C subu... 227 6.5e-19 1
GENEDB_PFALCIPARUM|PF11_0117 - symbol:PF11_0117 "replicat... 148 4.1e-15 2
UNIPROTKB|Q8IIQ1 - symbol:PF11_0117 "Replication factor C... 148 4.1e-15 2
UNIPROTKB|P09122 - symbol:dnaX "DNA polymerase III subuni... 207 3.1e-14 1
UNIPROTKB|Q2GDS0 - symbol:NSE_0492 "Putative DNA polymera... 197 2.1e-13 1
TIGR_CMR|NSE_0492 - symbol:NSE_0492 "putative DNA polymer... 197 2.1e-13 1
UNIPROTKB|G4NAB7 - symbol:MGG_03202 "Replication factor C... 194 3.3e-13 1
UNIPROTKB|F1P3C0 - symbol:RFC3 "Uncharacterized protein" ... 193 4.6e-13 1
TIGR_CMR|ECH_0014 - symbol:ECH_0014 "DNA polymerase III, ... 176 5.9e-13 2
SGD|S000005743 - symbol:RFC1 "Subunit of heteropentameric... 192 3.8e-12 1
TIGR_CMR|BA_0019 - symbol:BA_0019 "DNA polymerase III, ga... 189 4.2e-12 1
UNIPROTKB|E7DN81 - symbol:E7DN81 "DnaX DNA polymerase III... 180 1.4e-11 1
TIGR_CMR|CHY_2675 - symbol:CHY_2675 "putative DNA polymer... 182 2.3e-11 1
TIGR_CMR|DET_0585 - symbol:DET_0585 "DNA polymerase III, ... 155 6.2e-11 2
GENEDB_PFALCIPARUM|PFB0895c - symbol:PFB0895c "replicatio... 159 1.3e-10 2
UNIPROTKB|O96271 - symbol:PFB0895c "Replication factor C ... 159 1.3e-10 2
TIGR_CMR|SPO_3550 - symbol:SPO_3550 "DNA polymerase III, ... 138 1.5e-10 2
TAIR|locus:2032432 - symbol:AT1G24290 species:3702 "Arabi... 174 2.1e-10 1
ASPGD|ASPL0000029025 - symbol:AN5617 species:162425 "Emer... 169 7.6e-10 1
FB|FBgn0004913 - symbol:Gnf1 "Germ line transcription fac... 159 8.8e-10 2
UNIPROTKB|Q97RF7 - symbol:dnaX "DNA polymerase III, gamma... 164 3.1e-09 1
TIGR_CMR|BA_4628 - symbol:BA_4628 "ATPase, AAA family" sp... 162 3.3e-09 1
WB|WBGene00004337 - symbol:rfc-1 species:6239 "Caenorhabd... 156 5.4e-09 2
WARNING: Descriptions of 61 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2015233 [details] [associations]
symbol:RFC2 "replication factor C 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 EMBL:AC010795 HOGENOM:HOG000224155 Pfam:PF08542
OMA:TMELYSN HSSP:Q8U4J3 EMBL:BT031353 IPI:IPI00535046 PIR:B96657
RefSeq:NP_176504.1 UniGene:At.36170 ProteinModelPortal:Q9CAM7
SMR:Q9CAM7 STRING:Q9CAM7 PaxDb:Q9CAM7 PRIDE:Q9CAM7
EnsemblPlants:AT1G63160.1 GeneID:842620 KEGG:ath:AT1G63160
TAIR:At1g63160 InParanoid:Q9CAM7 PhylomeDB:Q9CAM7
ProtClustDB:PLN03025 Genevestigator:Q9CAM7 Uniprot:Q9CAM7
Length = 333
Score = 1488 (528.9 bits), Expect = 1.5e-152, P = 1.5e-152
Identities = 286/320 (89%), Positives = 306/320 (95%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
Y+ PWVEKYRP+KV DIVGN DAV+RL +IARDGNMPNLIL+GPPGTGKTTSILALAHEL
Sbjct: 13 YNEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 72
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LG NY+EAV+ELNASDDRGIDVVRNKIKMFAQKKVTLPPG+HKVV+LDEADSMT+GAQQA
Sbjct: 73 LGTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQA 132
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRT+EIYSNSTRFALACN S+KIIEPIQSRCA+VRFSRLSD++IL RL+VVV EKVPY
Sbjct: 133 LRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLLVVVAAEKVPY 192
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
VPEGLEAIIFTADGDMRQALNNLQAT+SGF FVNQENVFKVCDQPHPLHVKN+VRNVLE
Sbjct: 193 VPEGLEAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPLHVKNIVRNVLES 252
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
KFD AC GLKQLYDLGYSPTDIITTLFRIIKNY+MAE+LKLEFMKE GFAHMRICDGVGS
Sbjct: 253 KFDIACDGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGS 312
Query: 311 YLQLCGLLAKLSIVRETAKA 330
YLQLCGLLAKLSIVRETAKA
Sbjct: 313 YLQLCGLLAKLSIVRETAKA 332
>UNIPROTKB|P53033 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006302
"double-strand break repair" evidence=TAS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005654 GO:GO:0003677
GO:GO:0006260 GO:GO:0000724 GO:GO:0017111 KO:K10755 eggNOG:COG0470
Reactome:REACT_115612 SUPFAM:SSF48019 GO:GO:0005663 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
EMBL:U12438 IPI:IPI00586061 PIR:I50704 RefSeq:NP_990861.1
UniGene:Gga.883 ProteinModelPortal:P53033 SMR:P53033 STRING:P53033
Ensembl:ENSGALT00000001980 GeneID:396542 KEGG:gga:396542
InParanoid:P53033 NextBio:20816578 Uniprot:P53033
Length = 359
Score = 1140 (406.4 bits), Expect = 1.2e-115, P = 1.2e-115
Identities = 207/311 (66%), Positives = 263/311 (84%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
Y++PWVEKYRP K+C++VGN D V+RL + A++GN+PN+I+AGPPGTGKTTSIL LA L
Sbjct: 39 YELPWVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARAL 98
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT GAQQA
Sbjct: 99 LGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQA 158
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RL+ +V++E VPY
Sbjct: 159 LRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPY 218
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+GLEAIIFTA GDMRQALNNLQ+TYSGF F+N ENVFKVCD+PHPL VK M+++ +
Sbjct: 219 TDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCINA 278
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
D+A L L+ LGYSP D+I +FR+ K ++M E+LKLEF+KE G+ HM+I +GV S
Sbjct: 279 NIDEAYKILAHLWRLGYSPEDVIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVNS 338
Query: 311 YLQLCGLLAKL 321
LQ+ GLLA+L
Sbjct: 339 LLQMAGLLARL 349
>RGD|621198 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:621198
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 OMA:IQCLARI
OrthoDB:EOG48WC2D Pfam:PF08542 HSSP:P40339 EMBL:BC082110
IPI:IPI00194781 RefSeq:NP_446238.1 UniGene:Rn.113319
ProteinModelPortal:Q641W4 SMR:Q641W4 STRING:Q641W4 PRIDE:Q641W4
Ensembl:ENSRNOT00000001989 GeneID:116468 KEGG:rno:116468
UCSC:RGD:621198 InParanoid:Q641W4 NextBio:619010
Genevestigator:Q641W4 Uniprot:Q641W4
Length = 349
Score = 1138 (405.7 bits), Expect = 1.9e-115, P = 1.9e-115
Identities = 208/311 (66%), Positives = 264/311 (84%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKTTSIL LA L
Sbjct: 29 YELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARAL 88
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT GAQQA
Sbjct: 89 LGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQA 148
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D ++LSRLM V+++EKVPY
Sbjct: 149 LRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEKEKVPY 208
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+GLEAIIFTA GDMRQALNNLQ+T+SGF ++N ENVFKVCD+PHPL VK M+++ ++
Sbjct: 209 TDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMIQHCVDA 268
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
D+A L L+ LGYSP D+I +FR+ K + MAE+LKLEF+KE G+ HM++ +GV S
Sbjct: 269 NIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAEGVNS 328
Query: 311 YLQLCGLLAKL 321
LQ+ GLLA+L
Sbjct: 329 LLQMAGLLARL 339
>UNIPROTKB|F6ULR2 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 OMA:IQCLARI
Pfam:PF08542 Ensembl:ENSCAFT00000019010 EMBL:AAEX03004231
EMBL:AAEX03004232 Uniprot:F6ULR2
Length = 364
Score = 1136 (405.0 bits), Expect = 3.1e-115, P = 3.1e-115
Identities = 207/311 (66%), Positives = 264/311 (84%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
Y++PWVEKYRP K+ +IVGN D V+RL + A++GN+PN+I+AGPPGTGKTTSIL LA L
Sbjct: 44 YELPWVEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARAL 103
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT GAQQA
Sbjct: 104 LGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQA 163
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++LSD ++L+RL+ V+++EKVPY
Sbjct: 164 LRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKVPY 223
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+GLEA+IFTA GDMRQALNN+Q+T+SGF F+N ENVFKVCD+PHPL VK M+++ +
Sbjct: 224 TDDGLEAVIFTAQGDMRQALNNVQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNA 283
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+ HM+I +GV S
Sbjct: 284 NIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNS 343
Query: 311 YLQLCGLLAKL 321
LQ+ GLLA+L
Sbjct: 344 LLQMAGLLARL 354
>UNIPROTKB|P35250 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006260 "DNA replication"
evidence=TAS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=TAS] [GO:0032201 "telomere maintenance via
semi-conservative replication" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_216 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 Reactome:REACT_115566
GO:GO:0005654 GO:GO:0003677 GO:GO:0017111 GO:GO:0000084 KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0000722 EMBL:CH471200
Orphanet:904 Reactome:REACT_383 GO:GO:0006283 GO:GO:0006271
GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019 GO:GO:0005663
EMBL:AF045555 EMBL:AC005081 CTD:5982 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI Pfam:PF08542 EMBL:M87338
EMBL:AF483622 EMBL:AB451243 EMBL:BC002813 IPI:IPI00017412
IPI:IPI00218280 PIR:A42700 RefSeq:NP_002905.2 RefSeq:NP_852136.1
UniGene:Hs.647062 ProteinModelPortal:P35250 SMR:P35250
DIP:DIP-34367N IntAct:P35250 STRING:P35250 PhosphoSite:P35250
DMDM:2507300 PaxDb:P35250 PeptideAtlas:P35250 PRIDE:P35250
DNASU:5982 Ensembl:ENST00000055077 Ensembl:ENST00000352131
Ensembl:ENST00000573234 Ensembl:ENST00000576908 GeneID:5982
KEGG:hsa:5982 UCSC:uc003uaj.3 GeneCards:GC07M073645 HGNC:HGNC:9970
HPA:HPA029493 MIM:194050 MIM:600404 neXtProt:NX_P35250
PharmGKB:PA34339 InParanoid:P35250 PhylomeDB:P35250 ChiTaRS:RFC2
GenomeRNAi:5982 NextBio:23285 ArrayExpress:P35250 Bgee:P35250
CleanEx:HS_RFC2 Genevestigator:P35250 GermOnline:ENSG00000049541
Uniprot:P35250
Length = 354
Score = 1136 (405.0 bits), Expect = 3.1e-115, P = 3.1e-115
Identities = 209/311 (67%), Positives = 264/311 (84%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKTTSIL LA L
Sbjct: 34 YELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARAL 93
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LGP ++A++ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT GAQQA
Sbjct: 94 LGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQA 153
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RLM V+++E+VPY
Sbjct: 154 LRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPY 213
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+GLEAIIFTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL VK M+++ +
Sbjct: 214 TDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNA 273
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+ HM+I +GV S
Sbjct: 274 NIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNS 333
Query: 311 YLQLCGLLAKL 321
LQ+ GLLA+L
Sbjct: 334 LLQMAGLLARL 344
>UNIPROTKB|Q05B83 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 EMBL:BC122635 IPI:IPI00704020
RefSeq:NP_001074372.1 UniGene:Bt.35362 ProteinModelPortal:Q05B83
SMR:Q05B83 STRING:Q05B83 PRIDE:Q05B83 Ensembl:ENSBTAT00000024740
GeneID:508652 KEGG:bta:508652 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 InParanoid:Q05B83
OMA:IQCLARI OrthoDB:EOG48WC2D NextBio:20868620 ArrayExpress:Q05B83
Pfam:PF08542 Uniprot:Q05B83
Length = 352
Score = 1134 (404.2 bits), Expect = 5.0e-115, P = 5.0e-115
Identities = 210/311 (67%), Positives = 263/311 (84%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKTTSIL LA L
Sbjct: 32 YELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARAL 91
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT GAQQA
Sbjct: 92 LGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQA 151
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RL+ V+++EKV Y
Sbjct: 152 LRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLSVIEKEKVQY 211
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+GLEAIIFTA GDMRQALNNLQ+TYSGF F+N ENVFKVCD+PHPL VK M+++ +
Sbjct: 212 TDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCVSA 271
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+ HM+I +GV S
Sbjct: 272 DIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNS 331
Query: 311 YLQLCGLLAKL 321
LQ+ GLLA+L
Sbjct: 332 LLQMAGLLARL 342
>MGI|MGI:1341868 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1341868
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 EMBL:AF289664
SUPFAM:SSF48019 GO:GO:0005663 EMBL:AF139987 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
ChiTaRS:RFC2 EMBL:AK075997 EMBL:BC023028 IPI:IPI00124744
RefSeq:NP_064406.1 UniGene:Mm.332739 ProteinModelPortal:Q9WUK4
SMR:Q9WUK4 STRING:Q9WUK4 PhosphoSite:Q9WUK4 PaxDb:Q9WUK4
PRIDE:Q9WUK4 Ensembl:ENSMUST00000023867 GeneID:19718 KEGG:mmu:19718
InParanoid:Q9WUK4 NextBio:297116 Bgee:Q9WUK4 CleanEx:MM_RFC2
Genevestigator:Q9WUK4 GermOnline:ENSMUSG00000023104 Uniprot:Q9WUK4
Length = 349
Score = 1134 (404.2 bits), Expect = 5.0e-115, P = 5.0e-115
Identities = 207/311 (66%), Positives = 264/311 (84%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKTTSIL LA L
Sbjct: 29 YELPWVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARAL 88
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT GAQQA
Sbjct: 89 LGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQA 148
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D ++L+RLM V+++EKVPY
Sbjct: 149 LRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPY 208
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+GLEAIIFTA GDMRQALNNLQ+T+SGF ++N ENVFKVCD+PHPL VK M+++ ++
Sbjct: 209 TDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMIQHCVDA 268
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
D+A L L+ LGYSP D+I +FR+ K + MAE+LKLEF+KE G+ HM++ +GV S
Sbjct: 269 NIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAEGVNS 328
Query: 311 YLQLCGLLAKL 321
LQ+ GLLA+L
Sbjct: 329 LLQMAGLLARL 339
>ZFIN|ZDB-GENE-050306-29 [details] [associations]
symbol:rfc2 "replication factor C (activator 1) 2"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-050306-29 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 SUPFAM:SSF48019 GeneTree:ENSGT00550000075050
Pfam:PF08542 EMBL:CR450711 IPI:IPI00505688
Ensembl:ENSDART00000122513 Bgee:F1R0T0 Uniprot:F1R0T0
Length = 384
Score = 1105 (394.0 bits), Expect = 5.9e-112, P = 5.9e-112
Identities = 207/319 (64%), Positives = 264/319 (82%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
AY++PWVEKYRP K+ +IVGN + V+RL + AR+GN+PN+I+AGPPGTGKTTSIL LA
Sbjct: 63 AYELPWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARA 122
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
LLGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT GAQQ
Sbjct: 123 LLGPAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQ 182
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+S+L DE+I+ RL VV++E +
Sbjct: 183 ALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLTEVVEKENLH 242
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
+GLEAIIFTA GDMRQALNNLQ+T SGF ++N ENVFKVCD+PHPL VK+M+ + +
Sbjct: 243 VTNDGLEAIIFTAQGDMRQALNNLQSTNSGFGYINSENVFKVCDEPHPLLVKSMLEHCVN 302
Query: 250 GKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
D+A ++QL+ LGYSP DII +FR+ K ++MAE+LKLE++KE G+ HM++ +GV
Sbjct: 303 ANIDEAYKIIEQLWSLGYSPEDIIGNIFRVCKTFQMAEYLKLEYIKEIGYTHMKVAEGVN 362
Query: 310 SYLQLCGLLAKLSIVRETA 328
S LQ+ GLL +L R+TA
Sbjct: 363 SLLQMAGLLGRLC--RKTA 379
>UNIPROTKB|E2QSU1 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
Ensembl:ENSCAFT00000019010 Uniprot:E2QSU1
Length = 316
Score = 1054 (376.1 bits), Expect = 1.5e-106, P = 1.5e-106
Identities = 192/285 (67%), Positives = 244/285 (85%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
Y++PWVEKYRP K+ +IVGN D V+RL + A++GN+PN+I+AGPPGTGKTTSIL LA L
Sbjct: 32 YELPWVEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARAL 91
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT GAQQA
Sbjct: 92 LGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQA 151
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++LSD ++L+RL+ V+++EKVPY
Sbjct: 152 LRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKVPY 211
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+GLEA+IFTA GDMRQALNN+Q+T+SGF F+N ENVFKVCD+PHPL VK M+++ +
Sbjct: 212 TDDGLEAVIFTAQGDMRQALNNVQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNA 271
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMK 295
D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+K
Sbjct: 272 NIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIK 316
>UNIPROTKB|I3LHX6 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 GeneTree:ENSGT00550000075050 OMA:IQCLARI Pfam:PF08542
EMBL:FP340223 Ensembl:ENSSSCT00000028815 Uniprot:I3LHX6
Length = 295
Score = 1041 (371.5 bits), Expect = 3.6e-105, P = 3.6e-105
Identities = 193/285 (67%), Positives = 242/285 (84%)
Query: 37 LGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNK 96
L + AR+GN+PN+I+AGPPGTGKTTSIL LA LLGP ++AV+ELNAS+DRGIDVVRNK
Sbjct: 1 LQVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNK 60
Query: 97 IKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIE 156
IKMFAQ+KVTLP G+HK+++LDEADSMT GAQQALRRTMEIYS +TRFALACN S KIIE
Sbjct: 61 IKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIE 120
Query: 157 PIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT 216
PIQSRCA++R+++L+D +IL+RL+ V+++EKVPY +GLEAIIFTA GDMRQALNNLQ+T
Sbjct: 121 PIQSRCAVLRYTKLTDAQILARLLNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQST 180
Query: 217 YSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTL 276
+SGF F+N ENVFKVCD+PHPL VK M+++ + D+A L L+ LGYSP DII +
Sbjct: 181 FSGFGFINSENVFKVCDEPHPLLVKEMIQHCVSANIDEAYKILAHLWHLGYSPEDIIGNI 240
Query: 277 FRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKL 321
FR+ K ++MAE+LKLEF+KE G+ HMR+ +GV S LQ+ GLLA+L
Sbjct: 241 FRVCKTFQMAEYLKLEFIKEIGYTHMRVAEGVNSLLQMAGLLARL 285
>DICTYBASE|DDB_G0291868 [details] [associations]
symbol:rfc2 "replication factor C subunit 2"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0006298
"mismatch repair" evidence=ISS] [GO:0006272 "leading strand
elongation" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0291868 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000155_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000186 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 OMA:IQCLARI Pfam:PF08542 RefSeq:XP_629875.1
HSSP:P40339 ProteinModelPortal:Q54E21 SMR:Q54E21 STRING:Q54E21
EnsemblProtists:DDB0232231 GeneID:8628373 KEGG:ddi:DDB_G0291868
ProtClustDB:CLSZ2728742 Uniprot:Q54E21
Length = 338
Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
Identities = 201/313 (64%), Positives = 249/313 (79%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + DIVGN + V+RL I++DGN+PN+I++GPPGTGKT+SIL LA LLG
Sbjct: 20 LPWVEKYRPILIKDIVGNEETVSRLESISKDGNLPNIIISGPPGTGKTSSILCLARALLG 79
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
NY+EAV ELNASDDR +DVVR+KIK FA KKVTLP G+HK+++LDE DSMT+GAQQALR
Sbjct: 80 ANYKEAVYELNASDDRTLDVVRDKIKSFAMKKVTLPAGRHKIIILDEVDSMTSGAQQALR 139
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R MEIYS +TRFA ACN S+KIIEPIQSRCA++RF+RLSD +IL+RL VVQ EKVPY
Sbjct: 140 RIMEIYSGTTRFAFACNQSTKIIEPIQSRCAVLRFTRLSDSQILTRLREVVQIEKVPYTD 199
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GL AIIFTA+GDMRQALNNLQAT+SGF +N ENV KVCDQPHPL +K ++ + F
Sbjct: 200 DGLAAIIFTAEGDMRQALNNLQATHSGFGLINAENVTKVCDQPHPLIIKQIIALCAKSDF 259
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHMRICDGVGSY 311
+A LK+L+D GYS DII+ LF I K+ + E+ KLEF+KE GF ++R GV +
Sbjct: 260 KEAYPFLKKLWDDGYSSIDIISALFSITKSSNNIPEYQKLEFLKEIGFCNLRATTGVNTL 319
Query: 312 LQLCGLLAKLSIV 324
+QL GLL+KL +V
Sbjct: 320 VQLTGLLSKLCLV 332
>FB|FBgn0260985 [details] [associations]
symbol:RfC4 "Replication factor C subunit 4" species:7227
"Drosophila melanogaster" [GO:0007076 "mitotic chromosome
condensation" evidence=IMP;NAS] [GO:0000819 "sister chromatid
segregation" evidence=NAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=NAS;TAS] [GO:0006260 "DNA replication"
evidence=ISS;NAS;TAS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;NAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA;NAS]
[GO:0016321 "female meiosis chromosome segregation" evidence=IMP]
[GO:0007067 "mitosis" evidence=IMP] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0000077 "DNA damage checkpoint" evidence=IMP]
[GO:0000076 "DNA replication checkpoint" evidence=IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0000077
GO:GO:0005875 EMBL:AE014296 GO:GO:0022008 GO:GO:0003677
GO:GO:0006281 GO:GO:0046331 GO:GO:0017111 GO:GO:0007076 KO:K10755
eggNOG:COG0470 GO:GO:0016321 GO:GO:0000076 GO:GO:0006271
SUPFAM:SSF48019 EMBL:U15967 GeneTree:ENSGT00550000075050
OMA:IQCLARI Pfam:PF08542 EMBL:AY094829 PIR:S55020
RefSeq:NP_523915.1 UniGene:Dm.839 ProteinModelPortal:P53034
SMR:P53034 DIP:DIP-22077N IntAct:P53034 MINT:MINT-925288
STRING:P53034 PaxDb:P53034 PRIDE:P53034 EnsemblMetazoa:FBtr0073264
GeneID:38492 KEGG:dme:Dmel_CG14999 CTD:5984 FlyBase:FBgn0260985
InParanoid:P53034 OrthoDB:EOG4P8D0Q PhylomeDB:P53034
GenomeRNAi:38492 NextBio:808930 Bgee:P53034 GermOnline:CG14999
Uniprot:P53034
Length = 331
Score = 1023 (365.2 bits), Expect = 2.9e-103, P = 2.9e-103
Identities = 195/314 (62%), Positives = 243/314 (77%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PW+EKYRP K +IVGN D VARL + A GN PN+I+AGPPG GKTT+I LA LLG
Sbjct: 16 LPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLG 75
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+Y+EAV+ELNAS++RGIDVVRNKIKMFAQ+KVTLP G+HK+V+LDEADSMT GAQQALR
Sbjct: 76 DSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALR 135
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTMEIYS++TRFALACN S KIIEPIQSRCA++RF++LSD ++L++L+ V + EK+ Y
Sbjct: 136 RTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTE 195
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GLEAI+FTA GDMRQ LNNLQ+T GF + ENVFKVCD+PHP ++ M+ +
Sbjct: 196 DGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAANDI 255
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
A L +L+ LGYSP DII +FR+ K + EHLKL+F++E G HM+I DG+ S L
Sbjct: 256 HKAYKILAKLWKLGYSPEDIIANIFRVCKRINIDEHLKLDFIREIGITHMKIIDGINSLL 315
Query: 313 QLCGLLAKLSIVRE 326
QL LLAKL I E
Sbjct: 316 QLTALLAKLCIAAE 329
>CGD|CAL0000922 [details] [associations]
symbol:RFC4 species:5476 "Candida albicans" [GO:0003689 "DNA
clamp loader activity" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 CGD:CAL0000922
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000032 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
HOGENOM:HOG000224155 Pfam:PF08542 RefSeq:XP_719417.1
ProteinModelPortal:Q5ACI4 SMR:Q5ACI4 STRING:Q5ACI4 GeneID:3638994
KEGG:cal:CaO19.7658 Uniprot:Q5ACI4
Length = 323
Score = 1011 (360.9 bits), Expect = 5.4e-102, P = 5.4e-102
Identities = 194/313 (61%), Positives = 252/313 (80%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP K+ DIVGN + V RL +I +DGNMPN+I++G PG GKTTSI LA+ELL
Sbjct: 8 ELPWVEKYRPKKLEDIVGNEETVERLKLIVQDGNMPNMIISGLPGIGKTTSIHCLAYELL 67
Query: 72 GP-NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
G +Y +A MELNASDDRGIDVVRNKIK FAQ K++LPPG+ K+++LDEADSMT GAQQA
Sbjct: 68 GDEHYHQATMELNASDDRGIDVVRNKIKQFAQTKISLPPGRQKIIILDEADSMTPGAQQA 127
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRT+EIYSN+TRFA ACN SSKIIEP+QSRCAI+R++RLSDEE+L+RL+ +++ E V Y
Sbjct: 128 LRRTIEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNRLSDEEVLARLLEIIKMEDVKY 187
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
EGL+A+IFTA+GDMRQA+NNLQ+T +GF FVN NVFK+ DQPHPL +++++ + L+
Sbjct: 188 NTEGLQALIFTAEGDMRQAINNLQSTVAGFGFVNDVNVFKIVDQPHPLVIQSILLSCLKD 247
Query: 251 KFDDACSGLKQ-LYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGV 308
K D GL L+ GYS DI+T+ F++ K ++E +L+ +KE GFAHMR+ +GV
Sbjct: 248 KDIDKALGLLDGLWYKGYSAIDIVTSTFKVAKTIPNISEQKRLDVIKEIGFAHMRVLEGV 307
Query: 309 GSYLQLCGLLAKL 321
+YLQLCGL AK+
Sbjct: 308 ATYLQLCGLYAKI 320
>POMBASE|SPAC1687.03c [details] [associations]
symbol:rfc4 "DNA replication factor C complex subunit
Rfc4 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006272 "leading strand
elongation" evidence=ISO] [GO:0031389 "Rad17 RFC-like complex"
evidence=TAS] [GO:0031390 "Ctf18 RFC-like complex" evidence=TAS]
[GO:0031391 "Elg1 RFC-like complex" evidence=IDA] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0003689 "DNA clamp
loader activity" evidence=TAS] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748
PomBase:SPAC1687.03c GO:GO:0005829 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0007049 GO:GO:0000790
GO:GO:0043596 GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0031390
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 HOGENOM:HOG000224155 Pfam:PF08542 PIR:T37746
RefSeq:NP_593121.1 ProteinModelPortal:O94449 SMR:O94449
STRING:O94449 EnsemblFungi:SPAC1687.03c.1 GeneID:2542790
KEGG:spo:SPAC1687.03c OMA:GTYELPW OrthoDB:EOG4PP1RM
NextBio:20803834 Uniprot:O94449
Length = 342
Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
Identities = 191/314 (60%), Positives = 249/314 (79%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
AY++PWVEKYRP + DIVGN + + RL +IA++GNMP+L+++G PG GKTTSIL LAH
Sbjct: 18 AYELPWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHA 77
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
LLGP Y+E V+ELNASD+RGIDVVRN+IK FAQKKV LPPG+HK+++LDEADSMTAGAQQ
Sbjct: 78 LLGPAYKEGVLELNASDERGIDVVRNRIKAFAQKKVILPPGRHKIIILDEADSMTAGAQQ 137
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRRTMEIYSN+TRFALACN S+KIIEPIQSRCAI+R+SRL+D+++L RL+ + + EKV
Sbjct: 138 ALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAEKVN 197
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
Y +GL A+I TA+GDMRQA+NNLQ+T +GF VN ENVF+V DQP P+ + M+
Sbjct: 198 YTDDGLAALIMTAEGDMRQAVNNLQSTVAGFGLVNGENVFRVADQPSPVAIHAMLTACQS 257
Query: 250 GKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHMRICDGV 308
G D A L+ ++DLG+S DI+T +FR++K + + E +LE +KE G HM I +GV
Sbjct: 258 GNIDVALEKLQGIWDLGFSAVDIVTNMFRVVKTMDSIPEFSRLEMLKEIGQTHMIILEGV 317
Query: 309 GSYLQLCGLLAKLS 322
+ LQL GL+ +L+
Sbjct: 318 QTLLQLSGLVCRLA 331
>SGD|S000005454 [details] [associations]
symbol:RFC4 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0007062 "sister chromatid
cohesion" evidence=IPI] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;IDA] [GO:0006272 "leading strand elongation"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI] [GO:0007049
"cell cycle" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0031389 "Rad17
RFC-like complex" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 SGD:S000005454 GO:GO:0005524 GO:GO:0005634
EMBL:BK006948 GO:GO:0003677 GO:GO:0006298 EMBL:X83121 GO:GO:0017111
KO:K10755 eggNOG:COG0470 GO:GO:0031390 GO:GO:0007062 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 EMBL:U26030 PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 Pfam:PF08542 OrthoDB:EOG4PP1RM EMBL:L20502
EMBL:Z74836 PIR:A53845 RefSeq:NP_014547.1 ProteinModelPortal:P40339
SMR:P40339 DIP:DIP-2530N IntAct:P40339 MINT:MINT-540691
STRING:P40339 PaxDb:P40339 PeptideAtlas:P40339 EnsemblFungi:YOL094C
GeneID:854059 KEGG:sce:YOL094C CYGD:YOL094c OMA:TMELYSN
EvolutionaryTrace:P40339 NextBio:975656 Genevestigator:P40339
GermOnline:YOL094C Uniprot:P40339
Length = 323
Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
Identities = 195/311 (62%), Positives = 247/311 (79%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + DIVGN + + RL IA+DGNMP++I++G PG GKTTS+ LAHELLG
Sbjct: 9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG 68
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+Y + V+ELNASDDRGIDVVRN+IK FAQKK+ LPPGKHK+V+LDEADSMTAGAQQALR
Sbjct: 69 RSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALR 128
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME+YSNSTRFA ACN S+KIIEP+QSRCAI+R+S+LSDE++L RL+ +++ E V Y
Sbjct: 129 RTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYTN 188
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GLEAIIFTA+GDMRQA+NNLQ+T +G VN +NVFK+ D PHPL VK M+ L
Sbjct: 189 DGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKML---LASNL 245
Query: 253 DDACSGLK-QLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVGS 310
+D+ L+ L+ GYS DI+TT FR+ KN ++ E ++LE +KE G HMRI +GVG+
Sbjct: 246 EDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGT 305
Query: 311 YLQLCGLLAKL 321
YLQL +LAK+
Sbjct: 306 YLQLASMLAKI 316
>WB|WBGene00004338 [details] [associations]
symbol:rfc-2 species:6239 "Caenorhabditis elegans"
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260
GO:GO:0040011 GO:GO:0000003 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
OMA:IQCLARI Pfam:PF08542 EMBL:FO080408 PIR:D88638
RefSeq:NP_500069.1 HSSP:Q8U4J3 ProteinModelPortal:O44175 SMR:O44175
DIP:DIP-26649N IntAct:O44175 MINT:MINT-1044481 STRING:O44175
PaxDb:O44175 EnsemblMetazoa:F58F6.4 GeneID:176946
KEGG:cel:CELE_F58F6.4 UCSC:F58F6.4 CTD:176946 WormBase:F58F6.4
InParanoid:O44175 NextBio:894694 Uniprot:O44175
Length = 334
Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
Identities = 185/322 (57%), Positives = 243/322 (75%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + DIVGN + V RL +I +GN+PN++L+GPPG GKTTS+ ALA ELLG
Sbjct: 11 PWVEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWALARELLGD 70
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
+EAV+ELNASD+RGIDVVR++IK FAQ KVTLP G+HK+++LDEADSMT GAQQALRR
Sbjct: 71 KVKEAVLELNASDERGIDVVRHRIKTFAQTKVTLPEGRHKIIILDEADSMTDGAQQALRR 130
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
TME+Y+ +TRFALACN S KIIEPIQSRCA++R+++LS ++L+R+ V + EKV Y
Sbjct: 131 TMEMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLTRVKEVAKAEKVNYDDG 190
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHP-LHVKNMVRNVLEGKF 252
GLEAI+FTA GDMRQALNNLQAT + + VN+ENV KVCD+PHP L +K M+ + KF
Sbjct: 191 GLEAILFTAQGDMRQALNNLQATVNAYELVNKENVLKVCDEPHPDLMIK-MLHYCTDRKF 249
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMA----EHLKLEFMKEAGFAHMRICDGV 308
+A + + + LG+S DI++TLFR++K E++ E L++E++++ HMRI G+
Sbjct: 250 FEASKIIHEFHRLGFSSDDIVSTLFRVVKTVELSKNVSEQLRMEYIRQIAMCHMRIVQGL 309
Query: 309 GSYLQLCGLLAKLSIVRETAKA 330
S LQL L+A L V A A
Sbjct: 310 TSKLQLSRLIADLCRVSAAATA 331
>GENEDB_PFALCIPARUM|PFL2005w [details] [associations]
symbol:PFL2005w "replication factor c subunit 4"
species:5833 "Plasmodium falciparum" [GO:0006260 "DNA replication"
evidence=ISS] [GO:0005663 "DNA replication factor C complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
Identities = 148/309 (47%), Positives = 221/309 (71%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
DI W+EKYRP + ++VGN + L I GNMPNL+LAG PGTGKTTSIL LA E+L
Sbjct: 16 DI-WIEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGTGKTTSILCLASEML 74
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G ++AV+ELNASDDRGI+V+R++IK FA++ ++LPPGKHK+++LDE DSMT AQQ+L
Sbjct: 75 GNQAKKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQSL 134
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR ME+YS++TRFALACN S KII+ +QSRCAI+R+ +LSD+++L R++ + E + Y
Sbjct: 135 RRIMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRILKICDLENIKYT 194
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+GL+A+ F ADGD+R+A+N LQ+TY+G +N+ENV +CD P P ++N++++ + +
Sbjct: 195 DDGLDALTFIADGDLRKAVNCLQSTYAGLEVINKENVLHICDIPSPERIENLLKHCVNSE 254
Query: 252 FDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEM-AEHLKLEFMKEAGFAHMRICDGVGS 310
+ A + G++P DI T +++ + + +E +++EF+K A + G+ S
Sbjct: 255 WKKAHDIAYSMIKEGHTPYDISLTSSNVLRRFNIGSEVIQIEFLKIGAMACNTMATGLTS 314
Query: 311 YLQLCGLLA 319
+QL LLA
Sbjct: 315 VIQLDKLLA 323
>UNIPROTKB|Q8I512 [details] [associations]
symbol:PFL2005w "Replication factor C subunit 4"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
Identities = 148/309 (47%), Positives = 221/309 (71%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
DI W+EKYRP + ++VGN + L I GNMPNL+LAG PGTGKTTSIL LA E+L
Sbjct: 16 DI-WIEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGTGKTTSILCLASEML 74
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G ++AV+ELNASDDRGI+V+R++IK FA++ ++LPPGKHK+++LDE DSMT AQQ+L
Sbjct: 75 GNQAKKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQSL 134
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR ME+YS++TRFALACN S KII+ +QSRCAI+R+ +LSD+++L R++ + E + Y
Sbjct: 135 RRIMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRILKICDLENIKYT 194
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+GL+A+ F ADGD+R+A+N LQ+TY+G +N+ENV +CD P P ++N++++ + +
Sbjct: 195 DDGLDALTFIADGDLRKAVNCLQSTYAGLEVINKENVLHICDIPSPERIENLLKHCVNSE 254
Query: 252 FDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEM-AEHLKLEFMKEAGFAHMRICDGVGS 310
+ A + G++P DI T +++ + + +E +++EF+K A + G+ S
Sbjct: 255 WKKAHDIAYSMIKEGHTPYDISLTSSNVLRRFNIGSEVIQIEFLKIGAMACNTMATGLTS 314
Query: 311 YLQLCGLLA 319
+QL LLA
Sbjct: 315 VIQLDKLLA 323
>UNIPROTKB|H7C5P4 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR008921
InterPro:IPR013748 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF48019
EMBL:AC005081 Pfam:PF08542 HGNC:HGNC:9970 ChiTaRS:RFC2
ProteinModelPortal:H7C5P4 Ensembl:ENST00000497430 Uniprot:H7C5P4
Length = 198
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 115/174 (66%), Positives = 145/174 (83%)
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RLM V
Sbjct: 2 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNV 61
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
+++E+VPY +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL VK
Sbjct: 62 IEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKE 121
Query: 243 MVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKE 296
M+++ + D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE
Sbjct: 122 MIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKE 175
>ZFIN|ZDB-GENE-040824-3 [details] [associations]
symbol:rfc4 "replication factor C (activator 1) 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0060041 "retina development in
camera-type eye" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 ZFIN:ZDB-GENE-040824-3 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0060041 GO:GO:0017111 KO:K10755
eggNOG:COG0470 SUPFAM:SSF48019 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4Q58PN
EMBL:AY648805 IPI:IPI00506924 RefSeq:NP_999902.2 UniGene:Dr.77554
ProteinModelPortal:Q6DRF4 STRING:Q6DRF4 PRIDE:Q6DRF4 GeneID:406435
KEGG:dre:406435 NextBio:20818031 ArrayExpress:Q6DRF4 Bgee:Q6DRF4
Uniprot:Q6DRF4
Length = 358
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 124/314 (39%), Positives = 192/314 (61%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT++ILA A EL G
Sbjct: 33 VPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYG 92
Query: 73 PN-YREAVMELNASDDRGIDVVRNKIKMFAQKKV--TLPPGK----HKVVVLDEADSMTA 125
P+ YR+ V+ELNASD+RGI VVR K+K FAQ V T P GK K+++LDEADSMT+
Sbjct: 93 PDLYRQRVLELNASDERGIQVVREKVKRFAQLTVAGTRPDGKTCPPFKIIILDEADSMTS 152
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF L+++ R++ + ++
Sbjct: 153 AAQAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLANDVQQERILEICRK 212
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQ--ATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
E + Y EG++A++ ++GD+R+A+ LQ A + R + ++ + ++ P ++++
Sbjct: 213 ENLKYTTEGVDALVRVSEGDLRKAITFLQSGARLNSEREITEQTIIEIAGVVPPKVIQSL 272
Query: 244 VRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
+ +G F+ +K + D GY+ T+++ L +I ++++ K ++
Sbjct: 273 LHICYKGTFEKLEVAVKDMIDQGYAATNLLNQLHDVIIEEQLSDKQKSVITEKMAEVDKC 332
Query: 304 ICDGVGSYLQLCGL 317
+ DG YLQL L
Sbjct: 333 LADGADEYLQLLSL 346
>ZFIN|ZDB-GENE-040907-1 [details] [associations]
symbol:rfc5 "replication factor C (activator 1) 5"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0060041 "retina development in camera-type eye" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-040907-1 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0060041 KO:K10756 GO:GO:0017111 SUPFAM:SSF48019
HOVERGEN:HBG002053 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:CU207223 EMBL:AY648755 IPI:IPI00505315
RefSeq:NP_001003862.1 UniGene:Dr.151058 SMR:Q6DRK4 STRING:Q6DRK4
Ensembl:ENSDART00000051670 GeneID:445385 KEGG:dre:445385
InParanoid:Q6DRK4 NextBio:20832089 Uniprot:Q6DRK4
Length = 334
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 122/321 (38%), Positives = 188/321 (58%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
A ++PWVEKYRP + D++ + D ++ + + +P+L+ GPPGTGKT++ILA A +
Sbjct: 11 ARNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQ 70
Query: 70 LL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQ 128
L + V+ELNASDDRGIDVVR I FA + G K+V+LDEAD+MT AQ
Sbjct: 71 LYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQ 129
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKV 188
ALRR +E ++ +TRF L CN SKII +QSRC RF LS +++ RL V+Q+E +
Sbjct: 130 NALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLEHVIQQESI 189
Query: 189 PYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH--VKNMVRN 246
P+G++AI+ + GDMR++LN LQ+T+ + V +E V+ C HPL + N++
Sbjct: 190 DITPDGMKAIVTLSTGDMRRSLNILQSTHMAYGKVTEETVY-TCTG-HPLRSDIANILDW 247
Query: 247 VLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
L F A + + +L L G + DI+T + +I + +++ + + R+
Sbjct: 248 ALNKDFTTAYNQILELKTLKGLALHDILTEVHLLIHRVDFPPSIRMGLLIKLADIEYRLA 307
Query: 306 DGVGSYLQLCGLLAKLSIVRE 326
G +QL ++A VR+
Sbjct: 308 SGTSEKIQLSSMVAAFQAVRD 328
>MGI|MGI:1919401 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1919401
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 GO:GO:0005663
HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
GeneTree:ENSGT00550000075072 OMA:ILACARQ CTD:5985 EMBL:AK011489
IPI:IPI00132481 RefSeq:NP_082404.1 UniGene:Mm.27997
ProteinModelPortal:Q9D0F6 SMR:Q9D0F6 STRING:Q9D0F6
PhosphoSite:Q9D0F6 PaxDb:Q9D0F6 PRIDE:Q9D0F6
Ensembl:ENSMUST00000086461 GeneID:72151 KEGG:mmu:72151
InParanoid:Q9D0F6 OrthoDB:EOG4RBQJX NextBio:335574 Bgee:Q9D0F6
CleanEx:MM_RFC5 Genevestigator:Q9D0F6 GermOnline:ENSMUSG00000029363
Uniprot:Q9D0F6
Length = 339
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 121/319 (37%), Positives = 183/319 (57%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
A ++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA A +
Sbjct: 16 ARNLPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQ 75
Query: 70 LL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQ 128
L + V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT AQ
Sbjct: 76 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQ 134
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKV 188
ALRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VVQEE V
Sbjct: 135 NALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENV 194
Query: 189 PYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVL 248
+G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++ +L
Sbjct: 195 DISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWML 254
Query: 249 EGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDG 307
F A + +L L G + DI+T + + + +++ + + R+ G
Sbjct: 255 NQDFTTAYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIEYRLSVG 314
Query: 308 VGSYLQLCGLLAKLSIVRE 326
+QL L+A + R+
Sbjct: 315 TSEKIQLSSLIAAFQVTRD 333
>UNIPROTKB|F1RKG3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000075072 OMA:ILACARQ
EMBL:CU468330 Ensembl:ENSSSCT00000010801 Uniprot:F1RKG3
Length = 354
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 121/317 (38%), Positives = 183/317 (57%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA A +L
Sbjct: 33 NLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLY 92
Query: 72 -GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT AQ A
Sbjct: 93 KDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNA 151
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+EEKV
Sbjct: 152 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDI 211
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G++A+I + GDMR+ALN LQ+T F V +E V+ P + N++ +L
Sbjct: 212 SEDGMKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQ 271
Query: 251 KFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
F A + +L L G + DI+T + + + +++ + + R+ G
Sbjct: 272 DFTTAYRNIMELKTLKGLALNDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTN 331
Query: 310 SYLQLCGLLAKLSIVRE 326
+QL L+A + R+
Sbjct: 332 EKIQLSSLIAAFQVTRD 348
>RGD|1309280 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=IEA;ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1309280
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
GeneTree:ENSGT00550000075072 OMA:ILACARQ IPI:IPI00870052
Ensembl:ENSRNOT00000001498 UCSC:RGD:1309280 ArrayExpress:F1LQL0
Uniprot:F1LQL0
Length = 339
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 121/319 (37%), Positives = 183/319 (57%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
A ++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA A +
Sbjct: 16 ARNLPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQ 75
Query: 70 LL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQ 128
L + V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT AQ
Sbjct: 76 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKRG-FKLVILDEADAMTQDAQ 134
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKV 188
ALRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VVQEE V
Sbjct: 135 NALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENV 194
Query: 189 PYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVL 248
+G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++ +L
Sbjct: 195 DISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWML 254
Query: 249 EGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDG 307
F A + +L L G + DI+T + + + +++ + + R+ G
Sbjct: 255 NQDFTTAYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRMHLLTKMADIEYRLSVG 314
Query: 308 VGSYLQLCGLLAKLSIVRE 326
+QL L+A + R+
Sbjct: 315 TSEKIQLSSLIAAFQVTRD 333
>UNIPROTKB|P40937 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0019899 "enzyme binding" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006281 "DNA repair"
evidence=NAS;TAS] [GO:0005663 "DNA replication factor C complex"
evidence=IDA] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
Reactome:REACT_216 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677
GO:GO:0019899 KO:K10756 GO:GO:0017111 GO:GO:0000084 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
OMA:ILACARQ EMBL:L07540 EMBL:AY254323 EMBL:AK094575 EMBL:AC131159
EMBL:BC001866 EMBL:BC013961 IPI:IPI00031514 IPI:IPI00925306
RefSeq:NP_001123584.1 RefSeq:NP_031396.1 RefSeq:NP_853556.2
UniGene:Hs.731908 PDB:1LFS PDBsum:1LFS ProteinModelPortal:P40937
SMR:P40937 DIP:DIP-36433N IntAct:P40937 MINT:MINT-1372754
STRING:P40937 PhosphoSite:P40937 DMDM:728777 PaxDb:P40937
PRIDE:P40937 DNASU:5985 Ensembl:ENST00000392542
Ensembl:ENST00000454402 GeneID:5985 KEGG:hsa:5985 UCSC:uc001twq.3
CTD:5985 GeneCards:GC12P118454 HGNC:HGNC:9973 HPA:HPA041037
MIM:600407 neXtProt:NX_P40937 PharmGKB:PA34342 InParanoid:P40937
PhylomeDB:P40937 GenomeRNAi:5985 NextBio:23303 ArrayExpress:P40937
Bgee:P40937 CleanEx:HS_RFC5 Genevestigator:P40937
GermOnline:ENSG00000111445 Uniprot:P40937
Length = 340
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 119/317 (37%), Positives = 183/317 (57%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA A +L
Sbjct: 19 NLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLY 78
Query: 72 -GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGID++R I FA + G K+V+LDEAD+MT AQ A
Sbjct: 79 KDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNA 137
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+EEKV
Sbjct: 138 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDI 197
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++ +L
Sbjct: 198 SEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQ 257
Query: 251 KFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
F A + +L L G + DI+T + + + +++ + + R+ G
Sbjct: 258 DFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTN 317
Query: 310 SYLQLCGLLAKLSIVRE 326
+QL L+A + R+
Sbjct: 318 EKIQLSSLIAAFQVTRD 334
>POMBASE|SPAC27E2.10c [details] [associations]
symbol:rfc3 "DNA replication factor C complex subunit
Rfc3" species:4896 "Schizosaccharomyces pombe" [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IC;IDA] [GO:0005663 "DNA replication factor C
complex" evidence=TAS] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IC]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0065007 "biological regulation" evidence=NAS]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC27E2.10c
GO:GO:0005829 GO:GO:0005524 GO:GO:0000077 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006261 GO:GO:0000790
GO:GO:0043596 KO:K10756 GO:GO:0017111 eggNOG:COG0470 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 EMBL:AB017039 EMBL:AB017040 EMBL:AJ012839 PIR:T43410
RefSeq:XP_001713099.1 ProteinModelPortal:O14003 SMR:O14003
STRING:O14003 EnsemblFungi:SPAC27E2.10c.1 GeneID:2541493
KEGG:spo:SPAC27E2.10c HOGENOM:HOG000224152 OMA:VIAFHER
OrthoDB:EOG4K0TX8 NextBio:20802592 Uniprot:O14003
Length = 342
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 112/310 (36%), Positives = 177/310 (57%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + D+V + D ++ L +P+++ GPPGTGKT++ILA A ++ G
Sbjct: 23 LPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYG 82
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
PNYR +MELNASDDRGID VR +IK FA + K+++LDEAD+MT AQ ALR
Sbjct: 83 PNYRNQLMELNASDDRGIDAVREQIKNFASTRQIFA-STFKMIILDEADAMTLAAQNALR 141
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R +E Y+ + RF + CN +KI IQSRC RF L +EI + V+Q E P
Sbjct: 142 RVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNIDP 201
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+ A++ + GDMR+ALN LQA ++ + ++ ++ PHP + +++++ +F
Sbjct: 202 DAKMAVLRLSKGDMRKALNILQACHAAYDHIDVSAIYNCVGHPHPSDIDYFLKSIMNDEF 261
Query: 253 DDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A + + + G + DI+T +F + E+ + K+ + + R+ G
Sbjct: 262 VIAFNTISSIKQQKGLALQDILTCIFEALDELEIKPNAKIFILDQLATIEHRMSFGCSEK 321
Query: 312 LQLCGLLAKL 321
+QL ++A +
Sbjct: 322 IQLSAMIASI 331
>UNIPROTKB|E2RCF4 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:AAEX03014719 RefSeq:XP_534696.3
ProteinModelPortal:E2RCF4 Ensembl:ENSCAFT00000015721 GeneID:477499
KEGG:cfa:477499 NextBio:20852966 Uniprot:E2RCF4
Length = 339
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 120/317 (37%), Positives = 182/317 (57%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA A +L
Sbjct: 18 NLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLY 77
Query: 72 -GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT AQ A
Sbjct: 78 KDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNA 136
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV EEKV
Sbjct: 137 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEEKVDL 196
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++ +L
Sbjct: 197 SEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQ 256
Query: 251 KFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
F A + +L L G + DI+T + + + +++ + + R+ G
Sbjct: 257 DFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRVHLLTKMADIEYRLSVGTN 316
Query: 310 SYLQLCGLLAKLSIVRE 326
+QL L+A + R+
Sbjct: 317 EKIQLSSLIAAFQVTRD 333
>UNIPROTKB|P35249 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0048015 "phosphatidylinositol-mediated
signaling" evidence=NAS] [GO:0006260 "DNA replication"
evidence=NAS;TAS] [GO:0006281 "DNA repair" evidence=NAS;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] Reactome:REACT_216
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677 EMBL:CH471052
GO:GO:0017111 GO:GO:0048015 GO:GO:0000084 KO:K10755 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 EMBL:M87339 EMBL:AF538718 EMBL:BT006987
EMBL:CR536561 EMBL:BC017452 EMBL:BC024022 IPI:IPI00017381
PIR:A45253 RefSeq:NP_002907.1 RefSeq:NP_853551.1 UniGene:Hs.732098
ProteinModelPortal:P35249 SMR:P35249 DIP:DIP-24267N IntAct:P35249
MINT:MINT-1485723 STRING:P35249 PhosphoSite:P35249 DMDM:1703052
PaxDb:P35249 PeptideAtlas:P35249 PRIDE:P35249 DNASU:5984
Ensembl:ENST00000296273 Ensembl:ENST00000392481 GeneID:5984
KEGG:hsa:5984 UCSC:uc003fqz.3 GeneCards:GC03M186507 HGNC:HGNC:9972
HPA:CAB004557 MIM:102577 neXtProt:NX_P35249 PharmGKB:PA34341
InParanoid:P35249 OMA:QQLSQNC PhylomeDB:P35249 ChiTaRS:RFC4
GenomeRNAi:5984 NextBio:23297 ArrayExpress:P35249 Bgee:P35249
CleanEx:HS_RFC4 Genevestigator:P35249 GermOnline:ENSG00000163918
Uniprot:P35249
Length = 363
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 125/319 (39%), Positives = 183/319 (57%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT++ILA A E
Sbjct: 35 AKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARE 94
Query: 70 LLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--LPPGK----HKVVVLDEADS 122
L GP +R V+ELNASD+RGI VVR K+K FAQ V+ GK K+V+LDEADS
Sbjct: 95 LFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADS 154
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD+ RL+ +
Sbjct: 155 MTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDI 214
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQ-AT-YSGFRFVNQENVFKVCDQPHPLHV 240
++E V EG+ ++ ++GD+R+A+ LQ AT +G + + ++ + + +
Sbjct: 215 AKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKI 274
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
+ G FD + +K L D G++ T ++ L ++ +++ K ++
Sbjct: 275 DGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEV 334
Query: 301 HMRICDGVGSYLQLCGLLA 319
+ DG +LQL L A
Sbjct: 335 DKCLADGADEHLQLISLCA 353
>RGD|1310142 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1310142
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755
eggNOG:COG0470 EMBL:CH473999 SUPFAM:SSF48019 HOVERGEN:HBG002053
Pfam:PF08542 CTD:5984 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 OrthoDB:EOG4Q58PN EMBL:BC168166
IPI:IPI00370513 RefSeq:NP_001099339.1 UniGene:Rn.17046
STRING:B4F778 Ensembl:ENSRNOT00000002487 GeneID:288003
KEGG:rno:288003 UCSC:RGD:1310142 OMA:INIPHED NextBio:627397
Genevestigator:B4F778 Uniprot:B4F778
Length = 364
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 127/317 (40%), Positives = 186/317 (58%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT++ILA A EL G
Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFG 97
Query: 73 PN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--LPPGK----HKVVVLDEADSMTA 125
P +R V+ELNASD+RGI VVR K+K FAQ V+ GK K+V+LDEADSMT+
Sbjct: 98 PELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTS 157
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD+ RL+ + ++
Sbjct: 158 AAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQKRLLDIAEK 217
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQ-AT-YSGFRFVNQENVFKVCDQPHPLHVKNM 243
E V E + ++ ++GD+R+A+ LQ AT +G + ++++ + + ++ +
Sbjct: 218 ENVKIGDEEIAYLVRISEGDLRKAITFLQSATRLTGGKEISEDVITDIAGVIPAATIEGI 277
Query: 244 VRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLF-RIIKNYEMAEHLKLEFMKEAGFAHM 302
V G FD + LK L D G++ T ++ L II++ +++ K ++
Sbjct: 278 VTACHSGSFDKLEAVLKNLIDEGHAATQLVNQLHDSIIEDENLSDKQKSIITEKLAEVDK 337
Query: 303 RICDGVGSYLQLCGLLA 319
+ DG +LQL L A
Sbjct: 338 CLADGADEHLQLMSLCA 354
>WB|WBGene00018409 [details] [associations]
symbol:F44B9.8 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:FO080400 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:VIAFHER
GeneTree:ENSGT00550000075072 PIR:S44809 RefSeq:NP_498750.2
ProteinModelPortal:P34429 SMR:P34429 DIP:DIP-27001N IntAct:P34429
MINT:MINT-1095598 STRING:P34429 PaxDb:P34429 EnsemblMetazoa:F44B9.8
GeneID:176131 KEGG:cel:CELE_F44B9.8 UCSC:F44B9.8 CTD:176131
WormBase:F44B9.8 InParanoid:P34429 NextBio:891256 Uniprot:P34429
Length = 368
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 116/320 (36%), Positives = 184/320 (57%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
A ++PWVEKYRP+K+ ++V + V L + +P+L+ GPPGTGKTT++LA A +
Sbjct: 26 ASNLPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQ 85
Query: 70 LLGPNYREA-VMELNASDDRGIDVVRNKIKMFAQKK------VTLPPGK--HKVVVLDEA 120
+ P + V+ELNASD+RGIDVVRN I FAQ K + G K+V+LDEA
Sbjct: 86 MYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEA 145
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D+MT AQ ALRR +E Y+++ RF + CN + I+ IQSRC RF+ L + I+ RL
Sbjct: 146 DAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLE 205
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+V+ E++ P+G +A++ + GDMR +N LQ+T F V++ V++ QP P +
Sbjct: 206 YIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQCIGQPTPKEM 265
Query: 241 KNMVRNVLEGKFDDACSGLK-QLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGF 299
K +V+ +L + ++ +L++ GY+ D+IT L + ++ + + G
Sbjct: 266 KEVVKTLLNDPSKKCMNTIQTKLFENGYALQDVITHLHDFVFTLDIPDEAMSAIITGLGE 325
Query: 300 AHMRICDGVGSYLQLCGLLA 319
+ G + QL ++A
Sbjct: 326 VEENLSTGCSNETQLAAVVA 345
>UNIPROTKB|F1NEW1 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:AADN02020726 IPI:IPI00819051 PRIDE:F1NEW1
Ensembl:ENSGALT00000039711 ArrayExpress:F1NEW1 Uniprot:F1NEW1
Length = 362
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 124/317 (39%), Positives = 183/317 (57%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT++ILA A EL G
Sbjct: 36 VPWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFG 95
Query: 73 PN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--LPPGK----HKVVVLDEADSMTA 125
P +R+ V+ELNASD+RGI V+R K+K FAQ + GK K+V+LDEADSMT+
Sbjct: 96 PELFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRADGKVCPPFKIVILDEADSMTS 155
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD+ RL+ V ++
Sbjct: 156 AAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEK 215
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQ-AT-YSGFRFVNQENVFKVCDQPHPLHVKNM 243
E V E + ++ +DGD+R+A+ LQ AT G + + ++ V ++ + +
Sbjct: 216 ENVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTEIAGVIPRETIDGL 275
Query: 244 VRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRII-KNYEMAEHLKLEFMKEAGFAHM 302
+ G F+ + K L + GY+ ++ L I+ ++ + ++ K +++
Sbjct: 276 LSACSSGSFEKLETVAKNLINEGYAVAQLVNQLHDIVVESEDFSDKQKSIIVEKLAEVDK 335
Query: 303 RICDGVGSYLQLCGLLA 319
+ DG YLQL L A
Sbjct: 336 CLADGADEYLQLISLCA 352
>UNIPROTKB|F1NIY0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917
EMBL:AADN02020726 IPI:IPI00574772 Ensembl:ENSGALT00000014162
ArrayExpress:F1NIY0 Uniprot:F1NIY0
Length = 359
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 124/317 (39%), Positives = 183/317 (57%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT++ILA A EL G
Sbjct: 36 VPWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFG 95
Query: 73 PN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--LPPGK----HKVVVLDEADSMTA 125
P +R+ V+ELNASD+RGI V+R K+K FAQ + GK K+V+LDEADSMT+
Sbjct: 96 PELFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRADGKVCPPFKIVILDEADSMTS 155
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD+ RL+ V ++
Sbjct: 156 AAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEK 215
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQ-AT-YSGFRFVNQENVFKVCDQPHPLHVKNM 243
E V E + ++ +DGD+R+A+ LQ AT G + + ++ V ++ + +
Sbjct: 216 ENVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTEIAGVIPRETIDGL 275
Query: 244 VRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRII-KNYEMAEHLKLEFMKEAGFAHM 302
+ G F+ + K L + GY+ ++ L I+ ++ + ++ K +++
Sbjct: 276 LSACSSGSFEKLETVAKNLINEGYAVAQLVNQLHDIVVESEDFSDKQKSIIVEKLAEVDK 335
Query: 303 RICDGVGSYLQLCGLLA 319
+ DG YLQL L A
Sbjct: 336 CLADGADEYLQLISLCA 352
>UNIPROTKB|F1SFI3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:CU633961 Ensembl:ENSSSCT00000012916 Uniprot:F1SFI3
Length = 366
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 127/322 (39%), Positives = 184/322 (57%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT++ILA A E
Sbjct: 35 AKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARE 94
Query: 70 LLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKHKVVVLDEA 120
L GP +R V+ELNASD+RGI VVR K+K FAQ V+ P K+V+LDEA
Sbjct: 95 LFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSEISGKPCPPFKIVILDEA 154
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD+ RL+
Sbjct: 155 DSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLL 214
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQ-AT-YSGFRFVNQENVFKVCDQPHPL 238
+ +E V EG+ ++ ++GD+R+A+ LQ AT +G + V ++ + +
Sbjct: 215 DIADKEHVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKMITDIAGVVPTE 274
Query: 239 HVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRII-KNYEMAEHLKLEFMKEA 297
+ ++ G FD + +K L D G++ T + L ++ +N +++ K ++
Sbjct: 275 TIDGVLAACQSGSFDKLEAVVKDLIDEGHAATQFVNQLHDVVVENDNLSDKQKSVITEKL 334
Query: 298 GFAHMRICDGVGSYLQLCGLLA 319
A + DG +LQL L A
Sbjct: 335 AEADKCLADGADEHLQLISLCA 356
>SGD|S000005234 [details] [associations]
symbol:RFC3 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IPI] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA] [GO:0006272 "leading
strand elongation" evidence=IDA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0007062 "sister chromatid cohesion" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000005234
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:BK006947
GO:GO:0016887 GO:GO:0006298 KO:K10756 eggNOG:COG0470 EMBL:U23084
GO:GO:0031390 GO:GO:0007062 GO:GO:0006272 SUPFAM:SSF48019
GO:GO:0005663 GO:GO:0031391 EMBL:Z71566 PDB:1SXJ PDBsum:1SXJ
GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8
EMBL:L18755 EMBL:U26029 PIR:A36988 RefSeq:NP_014109.1
ProteinModelPortal:P38629 SMR:P38629 DIP:DIP-2529N IntAct:P38629
MINT:MINT-540713 STRING:P38629 PaxDb:P38629 PeptideAtlas:P38629
EnsemblFungi:YNL290W GeneID:855426 KEGG:sce:YNL290W CYGD:YNL290w
GeneTree:ENSGT00550000075072 OMA:YAHKLTP EvolutionaryTrace:P38629
NextBio:979295 Genevestigator:P38629 GermOnline:YNL290W
Uniprot:P38629
Length = 340
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 119/328 (36%), Positives = 187/328 (57%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + ++ G + + + +G +P+L+ GPPGTGKT++I+ALA E+
Sbjct: 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G NY V+ELNASDDRGIDVVRN+IK FA + G K+++LDEAD+MT AQ AL
Sbjct: 72 GKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG-FKLIILDEADAMTNAAQNAL 130
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR +E Y+ +TRF + N + K+ + SRC RF L E I R+ V+ EK+
Sbjct: 131 RRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLS 190
Query: 192 PEGLEAIIFTADGDMRQALNNLQ---ATYSG--FRFVNQENVFKVCDQPHPLHVKNMVRN 246
P +A+I ++GDMR+ LN LQ AT ++ + +++ C P P +K ++++
Sbjct: 191 PNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKS 250
Query: 247 VLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMA-EHLKLEFMKEAGFAHMRI 304
+LE + A L ++ G + D+I + +I+++YE+ E ++ + + I
Sbjct: 251 ILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYSI 310
Query: 305 CDGVGSYLQLCGLLA--KLSIVRETAKA 330
G +Q ++ K S ET KA
Sbjct: 311 SKGGNDQIQGSAVIGAIKASFENETVKA 338
>UNIPROTKB|E2R2M6 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 CTD:5984 OMA:ICFRGTF
GeneTree:ENSGT00550000074917 EMBL:AAEX03017297 RefSeq:XP_535837.1
Ensembl:ENSCAFT00000021708 GeneID:478667 KEGG:cfa:478667
NextBio:20853970 Uniprot:E2R2M6
Length = 363
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 125/317 (39%), Positives = 184/317 (58%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT++ILA A EL G
Sbjct: 37 VPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFG 96
Query: 73 PN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--LPPGK----HKVVVLDEADSMTA 125
P +R V+ELNASD+RGI VVR K+K FAQ V+ GK K+V+LDEADSMT+
Sbjct: 97 PELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTS 156
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD+ RL+ + +
Sbjct: 157 AAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADK 216
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQ-AT-YSGFRFVNQENVFKVCDQPHPLHVKNM 243
E V EG+ ++ ++GD+R+A+ LQ AT +G + + ++ + + + +
Sbjct: 217 EHVKVSNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAGTIDGI 276
Query: 244 VRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRII-KNYEMAEHLKLEFMKEAGFAHM 302
G FD + +K L D G++ T +++ ++ +N +++ K ++ A
Sbjct: 277 FAACQSGSFDKLEAVVKDLIDEGHAATQLVSQFHDVVVENDNLSDKQKSIITEKLAEADK 336
Query: 303 RICDGVGSYLQLCGLLA 319
+ DG +LQL L A
Sbjct: 337 CLADGADEHLQLISLCA 353
>FB|FBgn0032244 [details] [associations]
symbol:RfC3 "Replication factor C subunit 3" species:7227
"Drosophila melanogaster" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 EMBL:AE014134
GO:GO:0022008 GO:GO:0003677 GO:GO:0006260 GO:GO:0046331 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075072 OMA:ILACARQ HSSP:Q8U4J3 EMBL:AF247499
EMBL:AY119188 RefSeq:NP_609399.1 UniGene:Dm.3298 SMR:Q9VKW3
IntAct:Q9VKW3 MINT:MINT-284572 STRING:Q9VKW3
EnsemblMetazoa:FBtr0080019 GeneID:34423 KEGG:dme:Dmel_CG5313
UCSC:CG5313-RA FlyBase:FBgn0032244 InParanoid:Q9VKW3
OrthoDB:EOG451C6M GenomeRNAi:34423 NextBio:788424 Uniprot:Q9VKW3
Length = 332
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 115/320 (35%), Positives = 184/320 (57%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
A +PWVEKYRP+ + D++ + + ++ + +P+L+ GPPGTGKT++ILA A +
Sbjct: 8 AVRMPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQ 67
Query: 70 LLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQ 128
L P ++ V+ELNASDDRGI +VR +I FA + T+ K+++LDEAD+MT AQ
Sbjct: 68 LYSPQQFKSMVLELNASDDRGIGIVRGQILNFASTR-TIFCDTFKLIILDEADAMTNDAQ 126
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKV 188
ALRR +E Y+++ RF + CN SKII +QSRC RF+ LS ++++ RL +++ E V
Sbjct: 127 NALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAV 186
Query: 189 PYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVL 248
+G A++ A GDMR+ LN LQ+T F VN++NV+ P ++ +++ +L
Sbjct: 187 QITEDGKRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNVYMCVGYPLRQDIEQILKALL 246
Query: 249 EGK-FDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICD 306
G +D+ ++ Y G + DIIT L + E+ + + + + R+
Sbjct: 247 SGSSLEDSFKTVESAKYARGLALEDIITELHLFVMRLELPMSVMNKLIVKLAQIEERLAK 306
Query: 307 GVGSYLQLCGLLAKLSIVRE 326
G Q L+A I R+
Sbjct: 307 GCTEVAQTAALVAAFFICRD 326
>GENEDB_PFALCIPARUM|PF14_0601 [details] [associations]
symbol:PF14_0601 "replication factor C3"
species:5833 "Plasmodium falciparum" [GO:0005663 "DNA replication
factor C complex" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 117/312 (37%), Positives = 171/312 (54%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + DI+ + ++ + + G +P+L+L GPPGTGKT++ILA+ EL G
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGD 73
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKK---VTLPPGKHKVVVLDEADSMTAGAQQA 130
V+ELNASDDRGI+V+R++IK FA+ K T K+++LDEAD MT AQ A
Sbjct: 74 KRSSFVLELNASDDRGINVIRDQIKTFAESKNHYTTCEKTTLKLIILDEADHMTYPAQNA 133
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
+RR ME Y+ + RF L CN +KI IQSRC RF+ L E + ++ + + + E V
Sbjct: 134 MRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALDIAKSENVNL 193
Query: 191 VPEGLEAIIFTADGDMRQALNNLQA-TYSGFRFVNQENVF-KVCDQPHPLHVKNMVRNVL 248
G++++I GDMR+ LN LQ + S V ENV D P P K ++
Sbjct: 194 TEGGIDSLIRVGHGDMRRILNCLQVVSLSHKNLVIDENVILSTLDIPLPSETKKILEYFT 253
Query: 249 EGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDG 307
+G ++ + L YD GYS DI+ L+ + Y+ + +K G R G
Sbjct: 254 KGSIKESYEFVSNLQYDKGYSTKDIMMCLYESVLTYDFPDSAFCLLLKNFGEIEERCSSG 313
Query: 308 VGSYLQLCGLLA 319
+ L L++
Sbjct: 314 ASEQITLSALIS 325
>UNIPROTKB|Q8IKK4 [details] [associations]
symbol:PF14_0601 "Replication factor C3" species:36329
"Plasmodium falciparum 3D7" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006271 "DNA strand elongation involved
in DNA replication" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 117/312 (37%), Positives = 171/312 (54%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + DI+ + ++ + + G +P+L+L GPPGTGKT++ILA+ EL G
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGD 73
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKK---VTLPPGKHKVVVLDEADSMTAGAQQA 130
V+ELNASDDRGI+V+R++IK FA+ K T K+++LDEAD MT AQ A
Sbjct: 74 KRSSFVLELNASDDRGINVIRDQIKTFAESKNHYTTCEKTTLKLIILDEADHMTYPAQNA 133
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
+RR ME Y+ + RF L CN +KI IQSRC RF+ L E + ++ + + + E V
Sbjct: 134 MRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALDIAKSENVNL 193
Query: 191 VPEGLEAIIFTADGDMRQALNNLQA-TYSGFRFVNQENVF-KVCDQPHPLHVKNMVRNVL 248
G++++I GDMR+ LN LQ + S V ENV D P P K ++
Sbjct: 194 TEGGIDSLIRVGHGDMRRILNCLQVVSLSHKNLVIDENVILSTLDIPLPSETKKILEYFT 253
Query: 249 EGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDG 307
+G ++ + L YD GYS DI+ L+ + Y+ + +K G R G
Sbjct: 254 KGSIKESYEFVSNLQYDKGYSTKDIMMCLYESVLTYDFPDSAFCLLLKNFGEIEERCSSG 313
Query: 308 VGSYLQLCGLLA 319
+ L L++
Sbjct: 314 ASEQITLSALIS 325
>MGI|MGI:2146571 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:2146571
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 EMBL:AK146954
EMBL:BC003335 IPI:IPI00319874 RefSeq:NP_663455.1 UniGene:Mm.386835
ProteinModelPortal:Q99J62 SMR:Q99J62 IntAct:Q99J62 STRING:Q99J62
PhosphoSite:Q99J62 PaxDb:Q99J62 PRIDE:Q99J62
Ensembl:ENSMUST00000023598 GeneID:106344 KEGG:mmu:106344
UCSC:uc007yth.1 OrthoDB:EOG4Q58PN NextBio:358165 Bgee:Q99J62
CleanEx:MM_RFC4 Genevestigator:Q99J62 GermOnline:ENSMUSG00000022881
Uniprot:Q99J62
Length = 364
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 127/317 (40%), Positives = 184/317 (58%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT++ILA A EL G
Sbjct: 38 VPWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFG 97
Query: 73 PN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--LPPGK----HKVVVLDEADSMTA 125
P +R V+ELNASD+RGI VVR K+K FAQ V+ GK K+V+LDEADSMT+
Sbjct: 98 PELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTS 157
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD+ RL+ + ++
Sbjct: 158 AAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEK 217
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQ-AT-YSGFRFVNQENVFKVCDQPHPLHVKNM 243
E V E + ++ ++GD+R+A+ LQ AT +G + V+++ + + + +
Sbjct: 218 ENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGI 277
Query: 244 VRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLF-RIIKNYEMAEHLKLEFMKEAGFAHM 302
G FD + +K L D G++ T ++ L II+N +++ K ++
Sbjct: 278 FTACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKHKSIITEKLAEVDK 337
Query: 303 RICDGVGSYLQLCGLLA 319
+ DG +LQL L A
Sbjct: 338 CLADGADEHLQLMSLCA 354
>UNIPROTKB|Q32PI3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
HOGENOM:HOG000224152 GeneTree:ENSGT00550000075072 OMA:ILACARQ
CTD:5985 OrthoDB:EOG4RBQJX EMBL:DAAA02045332 EMBL:BC108105
IPI:IPI00688331 RefSeq:NP_001068826.1 UniGene:Bt.21988 SMR:Q32PI3
STRING:Q32PI3 Ensembl:ENSBTAT00000009392 GeneID:508389
KEGG:bta:508389 NextBio:20868499 Uniprot:Q32PI3
Length = 316
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 114/267 (42%), Positives = 164/267 (61%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA A +L
Sbjct: 18 NLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLY 77
Query: 72 -GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT AQ A
Sbjct: 78 KDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNA 136
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+EEKV
Sbjct: 137 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDI 196
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G++A+I + GDMR+ALN LQ+T F V +E V+ P + N++ +L
Sbjct: 197 SEDGMKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQ 256
Query: 251 KFDDACSGLKQLYDL-GYSPTDIITTL 276
F A + +L L G + DI+T +
Sbjct: 257 DFTTAYRNIMELKTLKGLALHDILTEI 283
>TAIR|locus:2204710 [details] [associations]
symbol:RFC3 "replication factor C subunit 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0031348 "negative regulation of defense
response" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006312 "mitotic recombination"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0031048 "chromatin silencing by small RNA" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0051567
"histone H3-K9 methylation" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005524 GO:GO:0031348 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 EMBL:AC010704 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:ILACARQ HSSP:Q8U4J3
EMBL:AY065452 EMBL:AY117282 IPI:IPI00521569 PIR:A96804
RefSeq:NP_177871.1 UniGene:At.28476 UniGene:At.70634
ProteinModelPortal:Q9CAQ8 SMR:Q9CAQ8 STRING:Q9CAQ8 PaxDb:Q9CAQ8
PRIDE:Q9CAQ8 EnsemblPlants:AT1G77470.1 GeneID:844083
KEGG:ath:AT1G77470 TAIR:At1g77470 InParanoid:Q9CAQ8
PhylomeDB:Q9CAQ8 ProtClustDB:CLSN2682996 ArrayExpress:Q9CAQ8
Genevestigator:Q9CAQ8 Uniprot:Q9CAQ8
Length = 369
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 117/322 (36%), Positives = 185/322 (57%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + D+ + D + + + + +P+L+L GPPGTGKT++ILA+A +L GP
Sbjct: 40 PWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGP 99
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQ-KKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
YR ++ELNASDDRGIDVVR +I+ FA + +L K+V+LDEAD+MT AQ ALR
Sbjct: 100 KYRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALR 159
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R +E Y+ STRFAL N +KII +QSRC RF+ L + RL V++ E++
Sbjct: 160 RVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSD 219
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQE--------NVFKVCDQPHPLHVKNMV 244
GL A++ ++GDMR+ALN LQ+T+ + + +E +V+ P P ++ +
Sbjct: 220 CGLAALVRLSNGDMRKALNILQSTHMASKEITEEESKQITEEDVYLCTGNPLPKDIEQIS 279
Query: 245 RNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
+L FD+ + ++ G + DI+ + I +M ++++ + + R
Sbjct: 280 HWLLNKPFDECYKDVSEIKTRKGLAIVDIVKEITLFIFKIKMPSAVRVQLINDLADIEYR 339
Query: 304 ICDGVGSYLQLCGLLAKLSIVR 325
+ G LQL +++ + R
Sbjct: 340 LSFGCNDKLQLGAIISTFTHAR 361
>UNIPROTKB|C9JZI1 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 EMBL:AC112907 Pfam:PF08542 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00925945
ProteinModelPortal:C9JZI1 SMR:C9JZI1 STRING:C9JZI1
Ensembl:ENST00000433496 ArrayExpress:C9JZI1 Bgee:C9JZI1
Uniprot:C9JZI1
Length = 336
Score = 477 (173.0 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
Identities = 105/213 (49%), Positives = 140/213 (65%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT++ILA A E
Sbjct: 35 AKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARE 94
Query: 70 LLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--LPPGK----HKVVVLDEADS 122
L GP +R V+ELNASD+RGI VVR K+K FAQ V+ GK K+V+LDEADS
Sbjct: 95 LFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADS 154
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD+ RL+ +
Sbjct: 155 MTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDI 214
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQA 215
++E V EG+ ++ ++GD+R+A+ LQ+
Sbjct: 215 AKKENVKISDEGIAYLVKVSEGDLRKAITFLQS 247
Score = 54 (24.1 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
Identities = 13/58 (22%), Positives = 26/58 (44%)
Query: 262 LYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
L D G++ T ++ L ++ +++ K ++ + DG +LQL L A
Sbjct: 269 LIDEGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCA 326
>DICTYBASE|DDB_G0286027 [details] [associations]
symbol:rfc4 "replication factor C subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003689 "DNA
clamp loader activity" evidence=ISS] [GO:0031391 "Elg1 RFC-like
complex" evidence=ISS] [GO:0031389 "Rad17 RFC-like complex"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0005663
"DNA replication factor C complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0286027 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000085 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 Pfam:PF08542 RefSeq:XP_637900.1 HSSP:O28219
ProteinModelPortal:Q54MD4 STRING:Q54MD4 EnsemblProtists:DDB0232233
GeneID:8625410 KEGG:ddi:DDB_G0286027 OMA:SANDIVQ
ProtClustDB:CLSZ2430137 Uniprot:Q54MD4
Length = 347
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 119/314 (37%), Positives = 178/314 (56%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWV KYRP V D+ D ++ L GN+P+L+ GPPGTGKT++ILA+A ++ GP
Sbjct: 11 PWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMDIYGP 70
Query: 74 NY-REAVMELNASDDRGIDVVRNKIKMFAQKKV------TLPPGK-HKVVVLDEADSMTA 125
++ V+ELNASD+RGI+VVR KIK FA V T PG K+++LDEADSMT
Sbjct: 71 ELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEADSMTT 130
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRT+E S +TRF L CN S+II+P+ SRCA RF L + RL + Q+
Sbjct: 131 DAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKFISQQ 190
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMV 244
E + +AI ++GDMR+A+ LQ+ + F ++++ ++ + P +K +V
Sbjct: 191 EGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAGSLPPQLIKQLV 250
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFMKEAGFAHMR 303
+ FD S ++ + GY + +I+ LF ++ ++ + K + G
Sbjct: 251 DCCKKNSFDRLQSMVQSIIAQGYPVSQVISQLFDYVLTTKDLNQSQKSHITMKIGNVDRN 310
Query: 304 ICDGVGSYLQLCGL 317
+ DG +LQL L
Sbjct: 311 LIDGSEEFLQLFDL 324
>UNIPROTKB|J9NUF8 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
EMBL:AAEX03014719 Ensembl:ENSCAFT00000046634 Uniprot:J9NUF8
Length = 316
Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
Identities = 113/267 (42%), Positives = 163/267 (61%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA A +L
Sbjct: 18 NLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLY 77
Query: 72 -GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT AQ A
Sbjct: 78 KDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNA 136
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV EEKV
Sbjct: 137 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEEKVDL 196
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++ +L
Sbjct: 197 SEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQ 256
Query: 251 KFDDACSGLKQLYDL-GYSPTDIITTL 276
F A + +L L G + DI+T +
Sbjct: 257 DFTTAYRNIMELKTLKGLALHDILTEI 283
>FB|FBgn0030871 [details] [associations]
symbol:CG8142 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0031122 "cytoplasmic microtubule organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0003677
GO:GO:0006260 EMBL:AE014298 GO:GO:0046331 GO:GO:0017111
GO:GO:0031122 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
GeneTree:ENSGT00550000074917 HSSP:Q8U4J3 EMBL:AY069598
RefSeq:NP_573245.1 UniGene:Dm.2050 SMR:Q9VX15 IntAct:Q9VX15
MINT:MINT-847740 STRING:Q9VX15 EnsemblMetazoa:FBtr0074472
GeneID:32763 KEGG:dme:Dmel_CG8142 UCSC:CG8142-RA
FlyBase:FBgn0030871 InParanoid:Q9VX15 OMA:VGQMMEQ OrthoDB:EOG4Q2BXJ
GenomeRNAi:32763 NextBio:780237 Uniprot:Q9VX15
Length = 353
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 115/314 (36%), Positives = 181/314 (57%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP V D+V + VA L G++PN++L GPPGTGKT++ILA + ++ G
Sbjct: 31 PWVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFGD 90
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTL--PPGK----HKVVVLDEADSMTAGA 127
+++ ++ELNASD+RGI+VVR KIK F+Q + P GK K+++LDEADSMT A
Sbjct: 91 MFKDRILELNASDERGINVVRTKIKNFSQLSASSVRPDGKPCPPFKIIILDEADSMTHAA 150
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
Q ALRRTME S STRF L CN S+II PI SRC+ RF L +++++ RL + + E
Sbjct: 151 QSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGEDKVIDRLKYICEMEG 210
Query: 188 VPYVPEGLEAIIFTADGDMRQALNNLQATY--SG-FRFVNQENVFKVCDQPHPLHVKNMV 244
V + ++I+ + GD+R+A+ LQ+ Y G +N ++F++ ++++ +
Sbjct: 211 VKIEDDAYKSIVKISGGDLRRAITTLQSCYRLKGPEHIINTADLFEMSGVIPEYYLEDYL 270
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHMR 303
G ++ ++++ YS ++ I ++ + + K + G R
Sbjct: 271 EVCRSGNYERLEQFVREIGFSAYSVGQMMEQFVEFIVHHPGLNDPQKATICDKLGECCFR 330
Query: 304 ICDGVGSYLQLCGL 317
+ DG YLQ+ L
Sbjct: 331 LQDGGSEYLQIMDL 344
>ASPGD|ASPL0000017750 [details] [associations]
symbol:AN8064 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003689 "DNA clamp
loader activity" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IEA] [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IEA]
[GO:0031389 "Rad17 RFC-like complex" evidence=IEA] [GO:0006272
"leading strand elongation" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0000077 "DNA damage
checkpoint" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:BN001302 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:AACD01000139 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8 OMA:ILACARQ
RefSeq:XP_681333.1 ProteinModelPortal:Q5AUG6 STRING:Q5AUG6
EnsemblFungi:CADANIAT00004090 GeneID:2869010 KEGG:ani:AN8064.2
Uniprot:Q5AUG6
Length = 398
Score = 465 (168.7 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 103/242 (42%), Positives = 153/242 (63%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D+ G+ D +A + +P+L+L GPPGTGKT++ILALA +
Sbjct: 44 NLPWVEKYRPNTLDDVSGHKDILATINRFVEANQLPHLLLYGPPGTGKTSTILALARRIY 103
Query: 72 GP-NYREAVMELNASDDRGIDVVRNKIKMFAQKK--VTLPP---GKH-----KVVVLDEA 120
G N R+ V+ELNASDDRGIDVVR +IK FA K ++ P GK K+++LDEA
Sbjct: 104 GSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSATGKSSLASFKLIILDEA 163
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D+MT+ AQ ALRR ME Y+ +TRF + N + K+ + SRC RFS L +++I +
Sbjct: 164 DAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRVLID 223
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
V+++E V PE +++++ + GDMR+ALN LQA ++ + + +N + P P +
Sbjct: 224 QVIEKEDVRIQPEAVDSLVTLSRGDMRRALNVLQACHASSKPLPIKNAPQDQAVPEPETI 283
Query: 241 KN 242
N
Sbjct: 284 TN 285
Score = 60 (26.2 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 19/98 (19%), Positives = 42/98 (42%)
Query: 223 VNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDAC-SGLKQL-YDLGYSPTDIITTLFRII 280
+ E ++ PHP ++ +V +L +C + L L + G + DI++ L +
Sbjct: 283 ITNETIYDCIAAPHPADIQQIVTTLLATSDVTSCLNTLNTLKINKGLALADILSALGEQL 342
Query: 281 KNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLL 318
E+ ++ +++ R+ G +Q GL+
Sbjct: 343 YRLEVPAQTRITWLEGLAEIEWRLSAGGSETVQTGGLV 380
>DICTYBASE|DDB_G0282235 [details] [associations]
symbol:rfc5 "replication factor C subunit 5"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] [GO:0006272 "leading strand elongation" evidence=ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
dictyBase:DDB_G0282235 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0003677 GO:GO:0016887 GO:GO:0006298
KO:K10756 EMBL:AAFI02000046 eggNOG:COG0470 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 RefSeq:XP_640301.1 HSSP:P38629
ProteinModelPortal:Q54ST4 STRING:Q54ST4 EnsemblProtists:DDB0232229
GeneID:8623477 KEGG:ddi:DDB_G0282235 OMA:ILACARQ Uniprot:Q54ST4
Length = 347
Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
Identities = 117/321 (36%), Positives = 177/321 (55%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + D++ + D + + + +P+L+ GPPGTGKT++I A+A +L G
Sbjct: 24 LPWVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLYG 83
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQK----KVTLPPGKHKVVVLDEADSMTAGAQ 128
NY V+ELNASDDRGIDVVR +IK FA T+P +K+++LDEADSMT AQ
Sbjct: 84 DNYSRMVLELNASDDRGIDVVREQIKTFASSMFFFNTTVP---YKLIILDEADSMTNIAQ 140
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKV 188
ALRR +E Y+ +TRF + CN KII +QSRC RFS L RL ++++E V
Sbjct: 141 TALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEIIEKENV 200
Query: 189 PYVPEGLEAIIFTADGDMRQALNNLQA-TYSGF-RFVNQENVFKVCDQPHPLHVKNMVRN 246
+ + A++ GDMR+ LN LQ+ + S + +E ++K P P ++ MV
Sbjct: 201 KVDSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGYPMPSDIELMVDW 260
Query: 247 VLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
+L +++A + L G S DII TL + + ++ + + + +
Sbjct: 261 LLNSDYEEAFQNISDLKKKKGLSLNDIIATLQKFVVQIDLDNVILCKLLSHLSDIEYNLS 320
Query: 306 DGVGSYLQLCGLLAKLSIVRE 326
G LQL L+ + R+
Sbjct: 321 IGSSEKLQLGSLVGCFQLSRD 341
>UNIPROTKB|Q29RS9 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917
OMA:QQLSQNC EMBL:DAAA02001847 EMBL:DAAA02001846 EMBL:BC114041
IPI:IPI00728867 RefSeq:NP_001039359.1 UniGene:Bt.102331
STRING:Q29RS9 Ensembl:ENSBTAT00000045810 GeneID:504637
KEGG:bta:504637 NextBio:20866768 Uniprot:Q29RS9
Length = 337
Score = 474 (171.9 bits), Expect = 2.3e-48, Sum P(2) = 2.3e-48
Identities = 105/213 (49%), Positives = 139/213 (65%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT++ILA A E
Sbjct: 35 AKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARE 94
Query: 70 LLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--LPPGK----HKVVVLDEADS 122
L GP +R V+ELNASD+RGI VVR K+K FAQ V+ GK K+V+LDEADS
Sbjct: 95 LFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADS 154
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD+ RL+ +
Sbjct: 155 MTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDI 214
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQA 215
+E V EG+ ++ ++GD+R+A+ LQ+
Sbjct: 215 ADKEHVKISNEGIAYLVQVSEGDLRKAITFLQS 247
Score = 48 (22.0 bits), Expect = 2.3e-48, Sum P(2) = 2.3e-48
Identities = 13/59 (22%), Positives = 28/59 (47%)
Query: 262 LYDLGYSPTDIITTLFRII-KNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
L + G++ T ++ L ++ +N +++ K ++ + DG +LQL L A
Sbjct: 269 LINEGHAATQLVNQLHDVVVENDNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCA 327
>GENEDB_PFALCIPARUM|PFB0840w [details] [associations]
symbol:PFB0840w "replication factor C, subunit
2" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 132/321 (41%), Positives = 176/321 (54%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
+IPWVEKYRP ++ DIV +AV L + R NMP+LI GPPGTGKT++I ALAHEL
Sbjct: 3 NIPWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELF 62
Query: 72 GP-NYREAVMELNASDDRGIDVVRNKIKMF-----------AQKKVTLPPGKHKVVVLDE 119
G N E V+ELNASDDRGI+VVR KIK + ++ K LP K+VVLDE
Sbjct: 63 GKENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLP--SWKLVVLDE 120
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
AD MT AQ ALRR +EIYSN TRF L CN KI +PI SRC+ RF + +L
Sbjct: 121 ADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKL 180
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH 239
+ + Q E + V + LE II T +GD+R+A++ LQ + +V V P
Sbjct: 181 LYICQNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCINTKITLNSVLDVSGLPSD-- 238
Query: 240 VKNMVRNVLEG-KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-----EMAEHLKLEF 293
N+V +++ K D K + D+ D+ +F+ NY E + LK +
Sbjct: 239 --NIVYKIIDACKMKDLKLVEKTVQDIIEDGFDV-AYIFKSFNNYFVTNTEYEDSLKYQI 295
Query: 294 MKEAGFAHMRICDGVGSYLQL 314
+ E R+ G Y+QL
Sbjct: 296 LLELSRHDYRLHCGATQYIQL 316
>UNIPROTKB|O96260 [details] [associations]
symbol:PFB0840w "Replication factor C, subunit 2"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 132/321 (41%), Positives = 176/321 (54%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
+IPWVEKYRP ++ DIV +AV L + R NMP+LI GPPGTGKT++I ALAHEL
Sbjct: 3 NIPWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELF 62
Query: 72 GP-NYREAVMELNASDDRGIDVVRNKIKMF-----------AQKKVTLPPGKHKVVVLDE 119
G N E V+ELNASDDRGI+VVR KIK + ++ K LP K+VVLDE
Sbjct: 63 GKENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLP--SWKLVVLDE 120
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
AD MT AQ ALRR +EIYSN TRF L CN KI +PI SRC+ RF + +L
Sbjct: 121 ADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKL 180
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH 239
+ + Q E + V + LE II T +GD+R+A++ LQ + +V V P
Sbjct: 181 LYICQNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCINTKITLNSVLDVSGLPSD-- 238
Query: 240 VKNMVRNVLEG-KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-----EMAEHLKLEF 293
N+V +++ K D K + D+ D+ +F+ NY E + LK +
Sbjct: 239 --NIVYKIIDACKMKDLKLVEKTVQDIIEDGFDV-AYIFKSFNNYFVTNTEYEDSLKYQI 295
Query: 294 MKEAGFAHMRICDGVGSYLQL 314
+ E R+ G Y+QL
Sbjct: 296 LLELSRHDYRLHCGATQYIQL 316
>SGD|S000003829 [details] [associations]
symbol:RFC2 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031391 "Elg1 RFC-like complex"
evidence=IPI] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0006272 "leading strand elongation" evidence=IDA] [GO:0017076
"purine nucleotide binding" evidence=ISS] [GO:0000075 "cell cycle
checkpoint" evidence=IMP] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0007062 "sister chromatid cohesion"
evidence=IPI] [GO:0003689 "DNA clamp loader activity" evidence=IDA]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000003829
GO:GO:0005524 GO:GO:0005634 EMBL:BK006943 GO:GO:0003677
GO:GO:0006298 EMBL:L47993 GO:GO:0017111 GO:GO:0017076 KO:K06883
RefSeq:NP_012602.3 GeneID:853531 KEGG:sce:YJR068W KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
RefSeq:NP_012606.3 GeneID:853535 KEGG:sce:YJR072C PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224154
OrthoDB:EOG4ZCXDF EMBL:D28499 EMBL:U26028 EMBL:Z49568 EMBL:AY557920
PIR:S45531 ProteinModelPortal:P40348 SMR:P40348 DIP:DIP-2528N
IntAct:P40348 MINT:MINT-480404 STRING:P40348 PaxDb:P40348
PeptideAtlas:P40348 EnsemblFungi:YJR068W CYGD:YJR068w
GeneTree:ENSGT00550000074917 OMA:SMTADAQ EvolutionaryTrace:P40348
NextBio:974230 Genevestigator:P40348 GermOnline:YJR068W
Uniprot:P40348
Length = 353
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 119/328 (36%), Positives = 179/328 (54%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + ++ AV L + N+P+++ GPPGTGKT++ILAL EL GP
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 74 NYREA-VMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH----------KVVVLDEADS 122
+ ++ ++ELNASD+RGI +VR K+K FA+ V+ P KH K+++LDEADS
Sbjct: 86 DLMKSRILELNASDERGISIVREKVKNFARLTVS-KPSKHDLENYPCPPYKIIILDEADS 144
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MTA AQ ALRRTME YS TRF L CN ++II+P+ SRC+ RF L + RL +
Sbjct: 145 MTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFI 204
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQ-ENVFKVCDQ------P 235
++E V LE I+ + GD+R+ + LQ+ G +++ +N+ + P
Sbjct: 205 SEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVP 264
Query: 236 HPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRI-IKNYEMAEHLKLEFM 294
H + ++ +V V G FD+ + G+S ++ L I N + K +
Sbjct: 265 HDILIE-IVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQIS 323
Query: 295 KEAGFAHMRICDGVGSYLQLCGLLAKLS 322
R+ +G ++QL LL K+S
Sbjct: 324 WLLFTTDSRLNNGTNEHIQLLNLLVKIS 351
>POMBASE|SPAC23D3.02 [details] [associations]
symbol:rfc2 "DNA replication factor C complex subunit
Rfc2" species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005663 "DNA replication
factor C complex" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006270 "DNA replication initiation" evidence=IMP] [GO:0031389
"Rad17 RFC-like complex" evidence=TAS] [GO:0031390 "Ctf18 RFC-like
complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like complex"
evidence=IDA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IMP] [GO:0043596 "nuclear replication fork" evidence=IC]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC23D3.02
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0000790 GO:GO:0006270 GO:GO:0043596
GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0033314 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 PIR:T38278 RefSeq:NP_594540.1
ProteinModelPortal:Q09843 SMR:Q09843 STRING:Q09843
EnsemblFungi:SPAC23D3.02.1 GeneID:2541908 KEGG:spo:SPAC23D3.02
HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4ZCXDF NextBio:20802995
Uniprot:Q09843
Length = 340
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 118/324 (36%), Positives = 185/324 (57%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVAR-LGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
IPWVE YRP K D V + ++ + L N+P+++ G PGTGKT++ILAL+ EL
Sbjct: 19 IPWVELYRP-KTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTSTILALSRELF 77
Query: 72 GPNYREA-VMELNASDDRGIDVVRNKIKMFAQKKVT-----LPPGKHKVVVLDEADSMTA 125
GP ++ V+ELNASD+RGI ++R K+K FA+ VT P K+++LDEADSMT
Sbjct: 78 GPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTNKVDGYPCPPFKIIILDEADSMTQ 137
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME Y+ TRF L CN ++II+P+ SRC+ RF L +E ++ RL + +
Sbjct: 138 DAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNENMVKRLEFIAAD 197
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
+ V P + A++ + GDMR+A+ LQ+ + + V + + N++R
Sbjct: 198 QAVSMEPGVVNALVECSGGDMRKAITFLQSA-ANLHQGTPITISSVEELAGAVPY-NIIR 255
Query: 246 NVLEGKFDDACSGLKQLY-DL---GYSPTDIITTLFRII-KNYEMAEHLKLEFMKEAGFA 300
++L+ + S ++ L D+ GYS I++ L ++ K ++ +K + +
Sbjct: 256 SLLDTAYTKNVSNIETLSRDVAAEGYSTGIILSQLHDVLLKEETLSSPVKYKIFMKLSEV 315
Query: 301 HMRICDGVGSYLQLCGLLAKLSIV 324
R+ DG LQL LL+ +S+V
Sbjct: 316 DKRLNDGADETLQLLDLLSSISVV 339
>CGD|CAL0002015 [details] [associations]
symbol:RFC2 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1
RFC-like complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006270
"DNA replication initiation" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 CGD:CAL0002015
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000024 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224154 RefSeq:XP_720328.1
RefSeq:XP_888712.1 ProteinModelPortal:Q5AFN3 SMR:Q5AFN3
STRING:Q5AFN3 GeneID:3637939 GeneID:3703993 KEGG:cal:CaO19.7035
KEGG:cal:CaO19_7035 Uniprot:Q5AFN3
Length = 363
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 97/217 (44%), Positives = 139/217 (64%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + D+ + L + GN+P+++ GPPGTGKT++ILALA EL GP
Sbjct: 25 PWVEKYRPKSLNDVSSQEHTIKVLTQTIKSGNLPHMLFYGPPGTGKTSTILALAKELYGP 84
Query: 74 N-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK---------HKVVVLDEADSM 123
N Y+ V+ELNASD+RGI +VR KIK FA+ ++ P + +K+++LDEADSM
Sbjct: 85 NLYKSRVLELNASDERGISIVREKIKNFARLTISNPTKEDLQNYPCPPYKIIILDEADSM 144
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T AQ ALRRTME Y+ TRF L CN ++II+PI SRC+ RF L++E RL +
Sbjct: 145 TNDAQSALRRTMENYAGITRFVLICNYITRIIDPITSRCSKFRFKLLNNENAQLRLKYIG 204
Query: 184 QEEKVPYVPEG-----LEAIIFTADGDMRQALNNLQA 215
Q+E + + E ++ ++ + GD+R+A+ LQ+
Sbjct: 205 QQENLRFESENNEHQVIQELLKISGGDLRKAITYLQS 241
>CGD|CAL0003213 [details] [associations]
symbol:RCF3 species:5476 "Candida albicans" [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1 RFC-like
complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0000077
"DNA damage checkpoint" evidence=IEA] [GO:0003689 "DNA clamp loader
activity" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 CGD:CAL0003213 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 HOGENOM:HOG000224152 EMBL:AACQ01000224
RefSeq:XP_710951.1 ProteinModelPortal:Q59ML2 SMR:Q59ML2
STRING:Q59ML2 GeneID:3647440 KEGG:cal:CaO19.3211 Uniprot:Q59ML2
Length = 361
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 113/333 (33%), Positives = 177/333 (53%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP-N 74
VEKYRP + ++ G + V + G +P+L+ GP GTGKT++I+ALA E+ G N
Sbjct: 26 VEKYRPDSLEEVKGQQEIVDTVRKFVETGKLPHLLFYGPSGTGKTSTIIALAKEIYGATN 85
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKV--------TLPPGKHKVVVLDEADSMTAG 126
Y+ ++ELNASDDRGIDVVRN+IK FA + T + K+++LDEAD+MT
Sbjct: 86 YKNMILELNASDDRGIDVVRNQIKNFASTRQIFTKNTSQTASNNQFKLIILDEADAMTNV 145
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQ +LRR +E ++ + RF + N S K+ + SRC RF+ + I RL V+ +E
Sbjct: 146 AQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDISAIKDRLNTVIIKE 205
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFR--------FVNQE-NVFKVCD---Q 234
V PE ++A++ ++GDMR+ALN LQ+ + N E +V + D
Sbjct: 206 NVNISPEAIDALLKLSNGDMRRALNVLQSCKAALGDEEKEEDGHANDEIDVDMIYDCVGA 265
Query: 235 PHPLHVKNMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEF 293
PHP V+ + ++L+ + A L + + G + D+IT I+ NY++ +LE
Sbjct: 266 PHPQDVETCLDSILKDDWTTAYLTLNKYKTIKGLALIDLITGFIEILNNYKLKPKTRLEI 325
Query: 294 MKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRE 326
+K I G +Q ++ + E
Sbjct: 326 LKGLSDIEYGISKGGNDKIQTSAIIGVIKDAME 358
>ASPGD|ASPL0000039105 [details] [associations]
symbol:AN2969 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0033314 "mitotic DNA
replication checkpoint" evidence=IEA] [GO:0006272 "leading strand
elongation" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0031389
"Rad17 RFC-like complex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:BN001306 GO:GO:0017111 SUPFAM:SSF48019 Pfam:PF08542
OMA:QQLSQNC EnsemblFungi:CADANIAT00010111 Uniprot:C8VJ05
Length = 387
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 97/215 (45%), Positives = 134/215 (62%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + D+ L + N+P+++ GPPGTGKT++ILALA L GP
Sbjct: 35 PWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGP 94
Query: 74 N-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG-------KH-----KVVVLDEA 120
YR ++ELNASD+RGI +VR K+K FA+ +++ P G K+ K+++LDEA
Sbjct: 95 ALYRSRILELNASDERGIGIVREKVKGFARVQLSHPTGLDAEYFEKYPCPPFKIIILDEA 154
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT AQ ALRRTME YS TRF L CN ++IIEP+ SRC+ RF L + RL
Sbjct: 155 DSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGDRLA 214
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQA 215
+ Q EK+ ++ +I +DGD+R+A+ LQ+
Sbjct: 215 QIAQLEKLSLENGVVDKLISCSDGDLRRAITYLQS 249
>UNIPROTKB|C9J8M3 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 EMBL:AC112907 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 OrthoDB:EOG4Q58PN IPI:IPI00792595
ProteinModelPortal:C9J8M3 SMR:C9J8M3 STRING:C9J8M3
Ensembl:ENST00000418288 ArrayExpress:C9J8M3 Bgee:C9J8M3
Uniprot:C9J8M3
Length = 214
Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 95/178 (53%), Positives = 118/178 (66%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT++ILA A E
Sbjct: 35 AKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARE 94
Query: 70 LLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--LPPGK----HKVVVLDEADS 122
L GP +R V+ELNASD+RGI VVR K+K FAQ V+ GK K+V+LDEADS
Sbjct: 95 LFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADS 154
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
MT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD+ RL+
Sbjct: 155 MTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLL 212
>RGD|1593197 [details] [associations]
symbol:LOC367042 "similar to Activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit) (A1 37 kDa subunit) (RF-C 37
kDa subunit) (RFC37)" species:10116 "Rattus norvegicus" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1593197
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000074917
OrthoDB:EOG4Q58PN IPI:IPI00780490 Ensembl:ENSRNOT00000060753
Uniprot:D4ADU1
Length = 346
Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
Identities = 113/308 (36%), Positives = 170/308 (55%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT++ILA A EL G
Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFG 97
Query: 73 PN-YREAVMELNASDDRGIDVVRN--KIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
P +R V+ELNASD+RGI V+N ++ + + P K V+LDEADSMT+ A+
Sbjct: 98 PALFRLRVLELNASDERGIQKVKNFAQLTVSGSRSDGKPCPSFKTVILDEADSMTSAAR- 156
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALR+TME S +TRF L CN S+IIEP+ SR + F+ LSD+ RL+ + ++E V
Sbjct: 157 ALRQTMEKESKTTRFCLFCNYVSRIIEPLTSRRSKFCFTPLSDKIQQKRLLGIAEKENVK 216
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQ-ATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVL 248
G + ++ ++GD+R+A+ LQ AT E+V P + ++
Sbjct: 217 L---G-DDLVTISEGDLRKAIPLLQSATRPTGGKETPEDVITDIAGVTPAAT---IEGIV 269
Query: 249 EGKFDDACSGLKQLYDLGYSPTDIITTLF-RIIKNYEMAEHLKLEFMKEAGFAHMRICDG 307
G FD + +K L D G++ T ++ L II+ +++ K ++ A + C
Sbjct: 270 SGSFDKLEAVVKNLIDEGHAATGLVNELHDSIIEKENLSDKWKSVITEK--LAEVEKCSA 327
Query: 308 VGSYLQLC 315
G+ LC
Sbjct: 328 GGADEPLC 335
>UNIPROTKB|F8W9B4 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR008921
InterPro:IPR013748 GO:GO:0003677 GO:GO:0006260 KO:K10756
SUPFAM:SSF48019 Pfam:PF08542 EMBL:AC131159 RefSeq:NP_001123584.1
UniGene:Hs.731908 DNASU:5985 GeneID:5985 KEGG:hsa:5985 CTD:5985
HGNC:HGNC:9973 GenomeRNAi:5985 NextBio:23303 IPI:IPI00908568
ProteinModelPortal:F8W9B4 SMR:F8W9B4 PRIDE:F8W9B4
Ensembl:ENST00000229043 ArrayExpress:F8W9B4 Bgee:F8W9B4
Uniprot:F8W9B4
Length = 255
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 93/249 (37%), Positives = 140/249 (56%)
Query: 79 VMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY 138
V+ELNASDDRGID++R I FA + G K+V+LDEAD+MT AQ ALRR +E +
Sbjct: 2 VLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRVIEKF 60
Query: 139 SNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAI 198
+ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+EEKV +G++A+
Sbjct: 61 TENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKAL 120
Query: 199 IFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSG 258
+ + GDMR+ALN LQ+T F V +E V+ P + N++ +L F A
Sbjct: 121 VTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRN 180
Query: 259 LKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGL 317
+ +L L G + DI+T + + + +++ + + R+ G +QL L
Sbjct: 181 ITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSL 240
Query: 318 LAKLSIVRE 326
+A + R+
Sbjct: 241 IAAFQVTRD 249
>WB|WBGene00004340 [details] [associations]
symbol:rfc-4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0045750 "positive regulation of S
phase of mitotic cell cycle" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006260
GO:GO:0000003 GO:GO:0000910 GO:GO:0017111 GO:GO:0045750 KO:K10755
eggNOG:COG0470 EMBL:FO080392 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 PIR:T16219 RefSeq:NP_498521.1
ProteinModelPortal:P53016 SMR:P53016 DIP:DIP-24293N IntAct:P53016
MINT:MINT-226482 STRING:P53016 PaxDb:P53016 EnsemblMetazoa:F31E3.3
GeneID:175976 KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976
WormBase:F31E3.3 InParanoid:P53016 OMA:CDLENNL NextBio:890574
Uniprot:P53016
Length = 334
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 82/208 (39%), Positives = 125/208 (60%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+ W EKYRP + DI + V L + ++P+L+ GPPGTGKT++ LA +L
Sbjct: 15 LTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQLFP 74
Query: 73 PN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG----KHKVVVLDEADSMTAGA 127
N + + V++LNASD+RGI VVR KI+ F++ + K K+++LDE D+MT A
Sbjct: 75 KNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKLKIIILDEVDAMTREA 134
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
Q A+RR +E +S +TRF L CN S++I P+ SRCA RF L E + RL + E
Sbjct: 135 QAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRTICDAEG 194
Query: 188 VPYVPEGLEAIIFTADGDMRQALNNLQA 215
P + L+ ++ ++GD+R+A+ LQ+
Sbjct: 195 TPMSDDELKQVMEYSEGDLRRAVCTLQS 222
>UNIPROTKB|P53016 [details] [associations]
symbol:rfc-4 "Replication factor C subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0006260 GO:GO:0000003 GO:GO:0000910
GO:GO:0017111 GO:GO:0045750 KO:K10755 eggNOG:COG0470 EMBL:FO080392
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 PIR:T16219
RefSeq:NP_498521.1 ProteinModelPortal:P53016 SMR:P53016
DIP:DIP-24293N IntAct:P53016 MINT:MINT-226482 STRING:P53016
PaxDb:P53016 EnsemblMetazoa:F31E3.3 GeneID:175976
KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976 WormBase:F31E3.3
InParanoid:P53016 OMA:CDLENNL NextBio:890574 Uniprot:P53016
Length = 334
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 82/208 (39%), Positives = 125/208 (60%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+ W EKYRP + DI + V L + ++P+L+ GPPGTGKT++ LA +L
Sbjct: 15 LTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQLFP 74
Query: 73 PN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG----KHKVVVLDEADSMTAGA 127
N + + V++LNASD+RGI VVR KI+ F++ + K K+++LDE D+MT A
Sbjct: 75 KNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKLKIIILDEVDAMTREA 134
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
Q A+RR +E +S +TRF L CN S++I P+ SRCA RF L E + RL + E
Sbjct: 135 QAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRTICDAEG 194
Query: 188 VPYVPEGLEAIIFTADGDMRQALNNLQA 215
P + L+ ++ ++GD+R+A+ LQ+
Sbjct: 195 TPMSDDELKQVMEYSEGDLRRAVCTLQS 222
>UNIPROTKB|C9JTT7 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 EMBL:AC112907 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00925397
ProteinModelPortal:C9JTT7 SMR:C9JTT7 STRING:C9JTT7
Ensembl:ENST00000447345 ArrayExpress:C9JTT7 Bgee:C9JTT7
Uniprot:C9JTT7
Length = 167
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 72/133 (54%), Positives = 89/133 (66%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT++ILA A E
Sbjct: 35 AKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARE 94
Query: 70 LLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--LPPGK----HKVVVLDEADS 122
L GP +R V+ELNASD+RGI VVR K+K FAQ V+ GK K+V+LDEADS
Sbjct: 95 LFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADS 154
Query: 123 MTAGAQQALRRTM 135
MT+ AQ ALRRTM
Sbjct: 155 MTSAAQAALRRTM 167
>WB|WBGene00004339 [details] [associations]
symbol:rfc-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003677 GO:GO:0006260 GO:GO:0040011
GO:GO:0006974 GO:GO:0040035 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
HOGENOM:HOG000224153 OMA:TRIMCLL EMBL:Z70307 HSSP:Q8U4J3 PIR:T19856
RefSeq:NP_502517.1 ProteinModelPortal:Q18547 SMR:Q18547
DIP:DIP-27479N IntAct:Q18547 MINT:MINT-228120 STRING:Q18547
PaxDb:Q18547 EnsemblMetazoa:C39E9.13.1 EnsemblMetazoa:C39E9.13.2
GeneID:178259 KEGG:cel:CELE_C39E9.13 UCSC:C39E9.13 CTD:178259
WormBase:C39E9.13 InParanoid:Q18547 NextBio:900398 Uniprot:Q18547
Length = 354
Score = 235 (87.8 bits), Expect = 8.5e-27, Sum P(2) = 8.5e-27
Identities = 80/264 (30%), Positives = 135/264 (51%)
Query: 69 ELLGPNYREAVMELNASDDRGID--VVRNKIKMFAQKKVTLPPGKH--KVVVLDEADSMT 124
+ + NY +E+ SD D VV++ +K AQ + KVVVL EADS+T
Sbjct: 87 QTVSSNYH---IEMTPSDVGIYDRVVVQDLVKEMAQTSQIESTSQRSFKVVVLCEADSLT 143
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ LRRTME Y+N+ + L+C S+IIEP+QSRC I+ +DE++ L V++
Sbjct: 144 RDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQSRCIIINVPAPTDEDVTKVLRKVIE 203
Query: 185 EEKVPYVPEG-LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHP---LHV 240
E +PE L+ I+ ++G++R+A+ +A R N+ V + P P +++
Sbjct: 204 RESF-LLPENVLQKIVEKSEGNLRRAILMTEA----LRMENESGVAESVVIPVPEWEIYI 258
Query: 241 KNMVRNVLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYEMAE---HLKLEFMKE 296
+ R +L+ + D +++ LY+L S T +F+ + + + + + E + E
Sbjct: 259 QETARLILQKQSSDMLLKVRERLYEL-LSRCIPPTVIFKKLLEHLLPKCPPQIAREVVSE 317
Query: 297 AG-FAHMRICDGVGSYLQLCGLLA 319
A F H R+ G + L G +A
Sbjct: 318 AAKFEH-RLVLGQKAIFHLEGFVA 340
Score = 95 (38.5 bits), Expect = 8.5e-27, Sum P(2) = 8.5e-27
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 15 WVEKYRPTKVCDIVG---NLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
WV+KYRP + G +++ L ++ D MP+L+ GP G GK T I L EL
Sbjct: 4 WVDKYRPKDLLGKDGVDYHIEQANHLKFLSADC-MPHLLFCGPSGAGKKTRIKCLLRELY 62
Query: 72 G 72
G
Sbjct: 63 G 63
>UNIPROTKB|Q18547 [details] [associations]
symbol:rfc-3 "Protein RFC-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0009792 GO:GO:0040010
GO:GO:0003677 GO:GO:0006260 GO:GO:0040011 GO:GO:0006974
GO:GO:0040035 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
HOGENOM:HOG000224153 OMA:TRIMCLL EMBL:Z70307 HSSP:Q8U4J3 PIR:T19856
RefSeq:NP_502517.1 ProteinModelPortal:Q18547 SMR:Q18547
DIP:DIP-27479N IntAct:Q18547 MINT:MINT-228120 STRING:Q18547
PaxDb:Q18547 EnsemblMetazoa:C39E9.13.1 EnsemblMetazoa:C39E9.13.2
GeneID:178259 KEGG:cel:CELE_C39E9.13 UCSC:C39E9.13 CTD:178259
WormBase:C39E9.13 InParanoid:Q18547 NextBio:900398 Uniprot:Q18547
Length = 354
Score = 235 (87.8 bits), Expect = 8.5e-27, Sum P(2) = 8.5e-27
Identities = 80/264 (30%), Positives = 135/264 (51%)
Query: 69 ELLGPNYREAVMELNASDDRGID--VVRNKIKMFAQKKVTLPPGKH--KVVVLDEADSMT 124
+ + NY +E+ SD D VV++ +K AQ + KVVVL EADS+T
Sbjct: 87 QTVSSNYH---IEMTPSDVGIYDRVVVQDLVKEMAQTSQIESTSQRSFKVVVLCEADSLT 143
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ LRRTME Y+N+ + L+C S+IIEP+QSRC I+ +DE++ L V++
Sbjct: 144 RDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQSRCIIINVPAPTDEDVTKVLRKVIE 203
Query: 185 EEKVPYVPEG-LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHP---LHV 240
E +PE L+ I+ ++G++R+A+ +A R N+ V + P P +++
Sbjct: 204 RESF-LLPENVLQKIVEKSEGNLRRAILMTEA----LRMENESGVAESVVIPVPEWEIYI 258
Query: 241 KNMVRNVLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYEMAE---HLKLEFMKE 296
+ R +L+ + D +++ LY+L S T +F+ + + + + + E + E
Sbjct: 259 QETARLILQKQSSDMLLKVRERLYEL-LSRCIPPTVIFKKLLEHLLPKCPPQIAREVVSE 317
Query: 297 AG-FAHMRICDGVGSYLQLCGLLA 319
A F H R+ G + L G +A
Sbjct: 318 AAKFEH-RLVLGQKAIFHLEGFVA 340
Score = 95 (38.5 bits), Expect = 8.5e-27, Sum P(2) = 8.5e-27
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 15 WVEKYRPTKVCDIVG---NLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
WV+KYRP + G +++ L ++ D MP+L+ GP G GK T I L EL
Sbjct: 4 WVDKYRPKDLLGKDGVDYHIEQANHLKFLSADC-MPHLLFCGPSGAGKKTRIKCLLRELY 62
Query: 72 G 72
G
Sbjct: 63 G 63
>ASPGD|ASPL0000001589 [details] [associations]
symbol:AN6300 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IEA]
[GO:0003689 "DNA clamp loader activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005663 "DNA replication factor C complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AACD01000107 EMBL:BN001301 KO:K10756 GO:GO:0017111
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 HOGENOM:HOG000224153
OMA:TRIMCLL OrthoDB:EOG4R273P RefSeq:XP_663904.1
ProteinModelPortal:Q5AZI0 STRING:Q5AZI0
EnsemblFungi:CADANIAT00006689 GeneID:2870977 KEGG:ani:AN6300.2
Uniprot:Q5AZI0
Length = 352
Score = 217 (81.4 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 87/278 (31%), Positives = 135/278 (48%)
Query: 59 KTTSILALAHELLGPNYREAVMELNASDDRGID--VVRNKIKMFAQ-KKVTLPPGKH-KV 114
+TTS L ++ Y +E+ SD D VV+ +K AQ ++V L + KV
Sbjct: 75 QTTSNRKLEFNIVSSVYH---LEITPSDVGTYDRVVVQELLKEIAQTQQVDLSAKQRFKV 131
Query: 115 VVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEE 174
VV++EAD +T AQ ALRRTME YS + R L N +S II PI+SR +VR + S+E+
Sbjct: 132 VVINEADHLTRDAQAALRRTMEKYSPNMRLILLANSTSNIIAPIRSRTLLVRVAAPSEED 191
Query: 175 ILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQ 234
I + L + E PE + I + ++R+AL +A Y+ V+ + D
Sbjct: 192 ICTILSTSAKREGWNEAPELNKRIAKESGRNLRRALLMFEAIYAQSEKVSDDTPIPPPDW 251
Query: 235 PHPLHVKNMVRNVLEGKFDDACSGLK-QLYDL--GYSP-TDIITTL-FRIIKNYEMAEHL 289
+ V + +L + ++ +LYDL P T I+ TL F++I + + L
Sbjct: 252 EALISV--IAEEILAERSPARLLQVRARLYDLLTHCIPATTILKTLTFKLIAKID--DTL 307
Query: 290 KLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRET 327
K E +K + F RI G L +AK + E+
Sbjct: 308 KPEVIKWSAFYEHRITQGSKVIFHLEAFVAKFMRIYES 345
Score = 107 (42.7 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
V+K+RP + + + + ARL +A+ G+ P+L++ GP G GK T +A EL GP
Sbjct: 5 VDKHRPRSLDTLSYHHELSARLRSLAQSGDFPHLLMYGPSGAGKKTRTIATLKELYGP 62
>TAIR|locus:2180315 [details] [associations]
symbol:EMB2775 "EMBRYO DEFECTIVE 2775" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=IMP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0006260
KO:K10756 GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
HOGENOM:HOG000224153 OMA:TRIMCLL HSSP:Q8U4J3 EMBL:AY074381
EMBL:AY091236 IPI:IPI00528406 RefSeq:NP_198126.1 UniGene:At.19785
ProteinModelPortal:Q8VXX4 SMR:Q8VXX4 STRING:Q8VXX4 PaxDb:Q8VXX4
PRIDE:Q8VXX4 EnsemblPlants:AT5G27740.1 GeneID:832836
KEGG:ath:AT5G27740 TAIR:At5g27740 InParanoid:Q8VXX4
PhylomeDB:Q8VXX4 ProtClustDB:CLSN2687133 ArrayExpress:Q8VXX4
Genevestigator:Q8VXX4 Uniprot:Q8VXX4
Length = 354
Score = 213 (80.0 bits), Expect = 3.5e-24, Sum P(2) = 3.5e-24
Identities = 77/258 (29%), Positives = 132/258 (51%)
Query: 80 MELNASDDRGID--VVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQALRRTM 135
+EL SD D +V+ IK A+ + GK +KV+VL+E D ++ AQ +LRRTM
Sbjct: 95 VELTPSDAGFQDRYIVQEIIKEMAKNRPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTM 154
Query: 136 EIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGL 195
E YS+S R L CN SSK+ E I+SRC VR + S EEI+ L V ++E + +P+G
Sbjct: 155 EKYSSSCRLILCCNSSSKVTEAIKSRCLNVRINAPSQEEIVKVLEFVAKKESLQ-LPQGF 213
Query: 196 EA-IIFTADGDMRQALNNLQAT-YSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
A I ++ +R+A+ +L+ + F + V D +V + ++++ +
Sbjct: 214 AARIAEKSNRSLRRAILSLETCRVQNYPFTGNQ-VISPMDWEE--YVAEIATDMMKEQSP 270
Query: 254 DACSGLK-QLYDLGYS--PTDIITT--LFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGV 308
++ ++Y+L + P ++I L ++K + LKLE A + R+ G
Sbjct: 271 KKLFQVRGKVYELLVNCIPPEVILKRLLHELLKKLD--SELKLEVCHWAAYYEHRMRLGQ 328
Query: 309 GSYLQLCGLLAK-LSIVR 325
+ + +AK +SI +
Sbjct: 329 KAIFHIEAFVAKFMSIYK 346
Score = 113 (44.8 bits), Expect = 3.5e-24, Sum P(2) = 3.5e-24
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WV+KYRP + ++ + D +L + + + P+L+ GP G+GK T I+AL ++ G +
Sbjct: 3 WVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYGAS 62
Query: 75 YREAVMELNA 84
+ +E A
Sbjct: 63 AEKVKVENRA 72
>DICTYBASE|DDB_G0293702 [details] [associations]
symbol:rfc3 "replication factor C subunit 3"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003689 "DNA
clamp loader activity" evidence=ISS] [GO:0031391 "Elg1 RFC-like
complex" evidence=ISS] [GO:0031389 "Rad17 RFC-like complex"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0005663
"DNA replication factor C complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0293702 GO:GO:0005634
GenomeReviews:CM000155_GR GO:GO:0000166 GO:GO:0003677 GO:GO:0006298
KO:K10756 GO:GO:0017111 EMBL:AAFI02000218 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 Pfam:PF08542 OMA:TRIMCLL RefSeq:XP_628996.1
HSSP:P38251 ProteinModelPortal:Q54BN3 STRING:Q54BN3 PRIDE:Q54BN3
EnsemblProtists:DDB0232232 GeneID:8629280 KEGG:ddi:DDB_G0293702
ProtClustDB:CLSZ2429230 Uniprot:Q54BN3
Length = 347
Score = 204 (76.9 bits), Expect = 4.5e-24, Sum P(2) = 4.5e-24
Identities = 76/262 (29%), Positives = 129/262 (49%)
Query: 80 MELNASDDRGID--VVRNKIKMFAQKKVTLPP------GKHKVVVLDEADSMTAGAQQAL 131
+E+N + D V++ IK AQ PP G K+V+L+E D ++ AQ AL
Sbjct: 93 IEINPGEAGSYDRVVIQTIIKEIAQS----PPIDSGSLGAFKIVILNEVDKLSKDAQHAL 148
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTME Y+ R L C+ ++K+I+PI+SRC +R S EEI L V EK +
Sbjct: 149 RRTMEKYATFCRLILCCDSTAKVIDPIKSRCLGIRVPAPSQEEIEKVLAKVATAEKFD-L 207
Query: 192 PEGLEA-IIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
P L + + G++R AL L++ + ++ Q + D + ++ +V++ E
Sbjct: 208 PSKLAVNVAKQSGGNLRYALMLLESQKAK-QYPFQSTELPLLDWEN--YISQIVKDCFEE 264
Query: 251 KFDDACSGLK-QLYDL-GYS-PTDII--TTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
+ S ++ +LY+L G+ P ++I T L I K + ++K E + A + R
Sbjct: 265 QSPARLSIVRGKLYELLGHCIPPELIFKTLLLEIFKKLD--HNMKFEIIHWASYYEHRSQ 322
Query: 306 DGVGSYLQLCGLLAK-LSIVRE 326
G L +AK +S+ ++
Sbjct: 323 IGSKPIFHLEAFIAKFMSVYKK 344
Score = 124 (48.7 bits), Expect = 4.5e-24, Sum P(2) = 4.5e-24
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W++KY+PT + + + D L + + G+ P+L++ GP G GK T ILA+ E+ GPN
Sbjct: 3 WIDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYGPN 62
>ZFIN|ZDB-GENE-020809-3 [details] [associations]
symbol:rfc3 "replication factor C (activator 1) 3"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 ZFIN:ZDB-GENE-020809-3 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111 SUPFAM:SSF48019
Pfam:PF08542 CTD:5983 HOVERGEN:HBG040509 HSSP:Q8U4J3 EMBL:BC042327
IPI:IPI00734824 RefSeq:NP_958865.1 UniGene:Dr.13362
ProteinModelPortal:Q8AW06 STRING:Q8AW06 PRIDE:Q8AW06 GeneID:259256
KEGG:dre:259256 InParanoid:Q8AW06 NextBio:20804713
ArrayExpress:Q8AW06 Bgee:Q8AW06 Uniprot:Q8AW06
Length = 356
Score = 203 (76.5 bits), Expect = 5.3e-23, Sum P(2) = 5.3e-23
Identities = 80/272 (29%), Positives = 125/272 (45%)
Query: 60 TTSILALAHELLGPNYREAVMELNASDDRGID--VVRNKIKMFAQKKVTLPPGKH--KVV 115
T S L + NY +E+N SD D V++ IK AQ + + KVV
Sbjct: 76 TPSKKKLEINTIASNYH---LEVNPSDAGNSDRVVIQELIKTVAQSQQIQSSAQREFKVV 132
Query: 116 VLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEI 175
+L E D +T AQ ALRRTME Y + R L CN +SK+I PI+SRC VR S EE+
Sbjct: 133 LLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRCLAVRVPLPSVEEV 192
Query: 176 LSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT-YSGFRFVNQENVFKVCDQ 234
S L V ++E + PE + I + ++R+AL +A + F +++ + +
Sbjct: 193 CSVLSGVCRKEGLLLPPELAKQIAEKSGRNLRKALLMCEACRVQQYPFSPDQDIPETDWE 252
Query: 235 PHPLHVKN-MVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLF-RIIKNYEMAEHLKLE 292
+ N +V + + + L +L SP I+ L ++ N + HLK E
Sbjct: 253 VYLRETANAIVSQQSPQRLLEVRARLYELLTHCISPEVIMKGLVTELLSNCD--GHLKAE 310
Query: 293 FMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324
+ A + R+ G + L +AK +
Sbjct: 311 VAQMAAYYEHRLQLGNKAIYHLEAFVAKFMAI 342
Score = 116 (45.9 bits), Expect = 5.3e-23, Sum P(2) = 5.3e-23
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WV+KYRPT + + + + +L + + G+ P+L++ GP G GK T I+ L EL G
Sbjct: 4 WVDKYRPTSLAKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGAG 63
Query: 75 YREAVME 81
+ +E
Sbjct: 64 VEKLRIE 70
>MGI|MGI:1916513 [details] [associations]
symbol:Rfc3 "replication factor C (activator 1) 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006260 "DNA
replication" evidence=ISO] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 MGI:MGI:1916513 GO:GO:0005634
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756
GO:GO:0046683 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:BC026795
IPI:IPI00665571 RefSeq:NP_081285.1 UniGene:Mm.12553
ProteinModelPortal:Q8R323 SMR:Q8R323 IntAct:Q8R323 STRING:Q8R323
PhosphoSite:Q8R323 PaxDb:Q8R323 PRIDE:Q8R323
Ensembl:ENSMUST00000038131 GeneID:69263 KEGG:mmu:69263
InParanoid:Q8R323 NextBio:328993 Bgee:Q8R323 CleanEx:MM_RFC3
Genevestigator:Q8R323 GermOnline:ENSMUSG00000033970 Uniprot:Q8R323
Length = 356
Score = 191 (72.3 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
Identities = 50/120 (41%), Positives = 67/120 (55%)
Query: 71 LGPNYREAVMELNASDDRGID--VVRNKIKMFAQKKV--TLPPGKHKVVVLDEADSMTAG 126
+ NY +E+N SD D V++ +K AQ + T KVV+L E D +T
Sbjct: 87 IASNYH---LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQRDFKVVLLTEVDKLTKD 143
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQ ALRRTME Y ++ R L CN +SK+I PI+SRC VR S E+I S L V ++E
Sbjct: 144 AQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICSVLSTVCRKE 203
Score = 114 (45.2 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
WV+KYRP+ + + + + A+L + + G+ P+L++ GP G GK T I+ + EL G
Sbjct: 4 WVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61
>UNIPROTKB|Q2TBV1 [details] [associations]
symbol:RFC3 "Replication factor C subunit 3" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0046683
"response to organophosphorus" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756 GO:GO:0046683
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 EMBL:BC109606
IPI:IPI00713322 RefSeq:NP_001033636.1 UniGene:Bt.16980
ProteinModelPortal:Q2TBV1 STRING:Q2TBV1 PRIDE:Q2TBV1
Ensembl:ENSBTAT00000014278 GeneID:515602 KEGG:bta:515602 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 InParanoid:Q2TBV1 OMA:TRIMCLL OrthoDB:EOG4T4CVP
NextBio:20871915 Uniprot:Q2TBV1
Length = 356
Score = 193 (73.0 bits), Expect = 4.4e-21, Sum P(2) = 4.4e-21
Identities = 53/144 (36%), Positives = 77/144 (53%)
Query: 71 LGPNYREAVMELNASDDRGID--VVRNKIKMFAQKKV--TLPPGKHKVVVLDEADSMTAG 126
+ NY +E+N SD D V++ +K AQ + T KVV+L E D +T
Sbjct: 87 IASNYH---LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQKDFKVVLLTEVDKLTKD 143
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQ ALRRTME Y ++ R L CN +SK+I PI+SRC VR S E+I L V ++E
Sbjct: 144 AQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKE 203
Query: 187 KVPYVPEGLEAIIFTADGDMRQAL 210
+ P+ + + ++R+AL
Sbjct: 204 GLNLPPQLAHRLAEKSCRNLRKAL 227
Score = 111 (44.1 bits), Expect = 4.4e-21, Sum P(2) = 4.4e-21
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
WV+KYRP + + + + A+L + + G+ P+L++ GP G GK T I+ + EL G
Sbjct: 4 WVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61
>RGD|1306832 [details] [associations]
symbol:Rfc3 "replication factor C (activator 1) 3" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA;ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005663 "DNA replication factor C complex"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA;ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0016887 "ATPase activity"
evidence=IEA;ISO] [GO:0046683 "response to organophosphorus"
evidence=IEA;ISO] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 RGD:1306832 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756 GO:GO:0046683
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:BC088281
EMBL:CH474108 IPI:IPI00189913 RefSeq:NP_001009629.1 UniGene:Rn.3711
STRING:Q5M830 Ensembl:ENSRNOT00000001444 GeneID:288414
KEGG:rno:288414 UCSC:RGD:1306832 InParanoid:Q5M830 NextBio:628070
Genevestigator:Q5M830 Uniprot:Q5M830
Length = 356
Score = 190 (71.9 bits), Expect = 5.5e-21, Sum P(2) = 5.5e-21
Identities = 49/120 (40%), Positives = 67/120 (55%)
Query: 71 LGPNYREAVMELNASDDRGID--VVRNKIKMFAQKKV--TLPPGKHKVVVLDEADSMTAG 126
+ NY +E+N SD D V++ +K AQ + T KVV+L E D +T
Sbjct: 87 IASNYH---LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQRDFKVVLLTEVDKLTKD 143
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQ ALRRTME Y ++ R L CN +SK+I PI+SRC +R S E+I S L V ++E
Sbjct: 144 AQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIEDICSVLSTVCKKE 203
Score = 114 (45.2 bits), Expect = 5.5e-21, Sum P(2) = 5.5e-21
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
WV+KYRP+ + + + + A+L + + G+ P+L++ GP G GK T I+ + EL G
Sbjct: 4 WVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61
>UNIPROTKB|F1RSR4 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046683 "response to organophosphorus" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 GO:GO:0046683
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
OMA:TRIMCLL EMBL:AEMK01181220 EMBL:CU076062
Ensembl:ENSSSCT00000010246 Uniprot:F1RSR4
Length = 356
Score = 185 (70.2 bits), Expect = 5.2e-20, Sum P(2) = 5.2e-20
Identities = 49/120 (40%), Positives = 66/120 (55%)
Query: 71 LGPNYREAVMELNASDDRGID--VVRNKIKMFAQKKV--TLPPGKHKVVVLDEADSMTAG 126
+ NY +E+N SD D V++ +K AQ + T KVV+L E D +T
Sbjct: 87 IASNYH---LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQKDFKVVLLTEVDKLTKD 143
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQ ALRRTME Y ++ R L CN +SK+I PI+SRC VR S E+I L V ++E
Sbjct: 144 AQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKE 203
Score = 111 (44.1 bits), Expect = 5.2e-20, Sum P(2) = 5.2e-20
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
WV+KYRP + + + + A+L + + G+ P+L++ GP G GK T I+ + EL G
Sbjct: 4 WVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61
>UNIPROTKB|E2R7L0 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046683 "response to organophosphorus"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0016887 KO:K10756 GO:GO:0046683 SUPFAM:SSF48019 Pfam:PF08542
CTD:5983 GeneTree:ENSGT00550000075006 OMA:TRIMCLL EMBL:AAEX03014212
RefSeq:XP_534500.3 ProteinModelPortal:E2R7L0
Ensembl:ENSCAFT00000010156 GeneID:477308 KEGG:cfa:477308
NextBio:20852824 Uniprot:E2R7L0
Length = 356
Score = 185 (70.2 bits), Expect = 8.4e-20, Sum P(2) = 8.4e-20
Identities = 49/120 (40%), Positives = 66/120 (55%)
Query: 71 LGPNYREAVMELNASDDRGID--VVRNKIKMFAQKKV--TLPPGKHKVVVLDEADSMTAG 126
+ NY +E+N SD D V++ +K AQ + T KVV+L E D +T
Sbjct: 87 IASNYH---LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKD 143
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQ ALRRTME Y ++ R L CN +SK+I PI+SRC VR S E+I L V ++E
Sbjct: 144 AQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKE 203
Score = 109 (43.4 bits), Expect = 8.4e-20, Sum P(2) = 8.4e-20
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
WV+KYRP + + + + A+L + + G+ P+L++ GP G GK T I+ + EL G
Sbjct: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61
>UNIPROTKB|P40938 [details] [associations]
symbol:RFC3 "Replication factor C subunit 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IDA;TAS]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006260 "DNA replication"
evidence=IDA;TAS] [GO:0003689 "DNA clamp loader activity"
evidence=TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0046683 "response to organophosphorus" evidence=IEP]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic
cell cycle" evidence=TAS] [GO:0000722 "telomere maintenance via
recombination" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271
"DNA strand elongation involved in DNA replication" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0006200 "ATP catabolic process"
evidence=IDA] Reactome:REACT_216 InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 EMBL:CH471075 KO:K10756 GO:GO:0017111 GO:GO:0046683
GO:GO:0000084 eggNOG:COG0470 GO:GO:0000075 GO:GO:0000722
GO:GO:0000731 Reactome:REACT_383 GO:GO:0006283 GO:GO:0003689
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 CTD:5983 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:L07541
EMBL:AF484446 EMBL:AL139081 EMBL:AL160394 EMBL:AL161891
EMBL:BC000149 EMBL:CX786577 IPI:IPI00031521 IPI:IPI00373882
PIR:T09573 RefSeq:NP_002906.1 RefSeq:NP_853536.2 UniGene:Hs.115474
ProteinModelPortal:P40938 SMR:P40938 DIP:DIP-36432N IntAct:P40938
MINT:MINT-3015032 STRING:P40938 PhosphoSite:P40938 DMDM:3915601
PaxDb:P40938 PeptideAtlas:P40938 PRIDE:P40938 DNASU:5983
Ensembl:ENST00000380071 Ensembl:ENST00000434425 GeneID:5983
KEGG:hsa:5983 UCSC:uc001uuz.3 GeneCards:GC13P034392 HGNC:HGNC:9971
HPA:HPA030149 MIM:600405 neXtProt:NX_P40938 PharmGKB:PA34340
InParanoid:P40938 PhylomeDB:P40938 ChiTaRS:RFC3 GenomeRNAi:5983
NextBio:23291 ArrayExpress:P40938 Bgee:P40938 CleanEx:HS_RFC3
Genevestigator:P40938 GermOnline:ENSG00000133119 Uniprot:P40938
Length = 356
Score = 185 (70.2 bits), Expect = 8.4e-20, Sum P(2) = 8.4e-20
Identities = 49/120 (40%), Positives = 66/120 (55%)
Query: 71 LGPNYREAVMELNASDDRGID--VVRNKIKMFAQKKV--TLPPGKHKVVVLDEADSMTAG 126
+ NY +E+N SD D V++ +K AQ + T KVV+L E D +T
Sbjct: 87 IASNYH---LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKD 143
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQ ALRRTME Y ++ R L CN +SK+I PI+SRC VR S E+I L V ++E
Sbjct: 144 AQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKE 203
Score = 109 (43.4 bits), Expect = 8.4e-20, Sum P(2) = 8.4e-20
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
WV+KYRP + + + + A+L + + G+ P+L++ GP G GK T I+ + EL G
Sbjct: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61
>FB|FBgn0028700 [details] [associations]
symbol:RfC38 "Replication factor C 38kD subunit" species:7227
"Drosophila melanogaster" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0003689 "DNA clamp loader activity" evidence=ISS]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0022008
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 EMBL:AF160912 UniGene:Dm.19818
ProteinModelPortal:Q7KLW6 IntAct:Q7KLW6 STRING:Q7KLW6 PaxDb:Q7KLW6
PRIDE:Q7KLW6 FlyBase:FBgn0028700 InParanoid:Q7KLW6
OrthoDB:EOG4C2FS4 ArrayExpress:Q7KLW6 Bgee:Q7KLW6 Uniprot:Q7KLW6
Length = 395
Score = 183 (69.5 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 73/253 (28%), Positives = 123/253 (48%)
Query: 80 MELNASDDRGID--VVRNKIKMFAQKKVTLPPGKH--KVVVLDEADSMTAGAQQALRRTM 135
+E+N SD D VV + IK AQ G+ KV+V+ E D +T AQ ALRRTM
Sbjct: 132 LEVNPSDAGMYDRTVVIDLIKQVAQTHQIEISGQREFKVIVISEGDELTKDAQHALRRTM 191
Query: 136 EIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGL 195
E Y + R ++ N +S+II I+SRC +R + ++ EI+S L + E + E
Sbjct: 192 EKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSILQNTCKREGLALPVELA 251
Query: 196 EAIIFTADGDMRQALNNLQAT-YSGFRFV-NQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
+ ++ ++ ++R+AL L+A + F NQE + D + ++ ++ +
Sbjct: 252 KRVVDKSERNLRRALLMLEAAKVAKAPFTANQE----IPDLDWQVFLRETASQIISEQTP 307
Query: 254 DACSGLKQ-LYDL---GYSPTDIITTLF-RIIKNYEMAEHLK-LEFMKEAGFAHMRICDG 307
+++ LY+L G P I L +++ N +M+ K LEF E + H R+ G
Sbjct: 308 AKLEKIRERLYELLTQGVPPNLIFRGLVEQLVNNCDMSIKAKTLEFATE--YEH-RMQSG 364
Query: 308 VGSYLQLCGLLAK 320
L +A+
Sbjct: 365 AKHIFHLEAFVAQ 377
Score = 113 (44.8 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WV+KYRP ++ + + D L + + + P+L+ GP G GK T I+ L E+ G
Sbjct: 43 WVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGSG 102
Query: 75 Y---REAVMELNASDDRGIDVV 93
R M +R ++V+
Sbjct: 103 VERLRSETMTFTTPSNRKVEVM 124
>SGD|S000000291 [details] [associations]
symbol:RFC5 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0031390 "Ctf18
RFC-like complex" evidence=IPI] [GO:0003689 "DNA clamp loader
activity" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IMP;IPI] [GO:0006272 "leading strand elongation"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA;IMP] [GO:0006298
"mismatch repair" evidence=TAS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031389 "Rad17 RFC-like complex" evidence=IDA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IPI] [GO:0005634
"nucleus" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 SGD:S000000291 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:BK006936 GO:GO:0006298 EMBL:X78993
RefSeq:NP_009644.3 GeneID:852383 KEGG:sce:YBR087W KO:K10756
GO:GO:0017111 eggNOG:COG0470 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
EMBL:Z35956 PDB:1SXJ PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153 OMA:TRIMCLL
OrthoDB:EOG4R273P EMBL:U26031 EMBL:AY693173 PIR:S48257
RefSeq:NP_009648.4 ProteinModelPortal:P38251 SMR:P38251
DIP:DIP-2531N IntAct:P38251 MINT:MINT-480383 STRING:P38251
PaxDb:P38251 PeptideAtlas:P38251 EnsemblFungi:YBR087W GeneID:852387
KEGG:sce:YBR090C CYGD:YBR087w EvolutionaryTrace:P38251
NextBio:971189 Genevestigator:P38251 GermOnline:YBR087W
Uniprot:P38251
Length = 354
Score = 186 (70.5 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 52/146 (35%), Positives = 83/146 (56%)
Query: 80 MELNASDDRGID--VVRNKIKMFAQ-KKVTLPPGK------HKVVVLDEADSMTAGAQQA 130
+E+ SD D V++ +K AQ ++V K +K V+++EA+S+T AQ A
Sbjct: 94 LEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAA 153
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTME YS + R + C+ S II PI+SRC ++R SD EI + L VV E++
Sbjct: 154 LRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSEISTILSDVVTNERIQL 213
Query: 191 VPEG-LEAIIFTADGDMRQALNNLQA 215
+ L+ I ++G++R +L L++
Sbjct: 214 ETKDILKRIAQASNGNLRVSLLMLES 239
Score = 106 (42.4 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIA-RDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
WV+KYRP + + N + L ++ + ++P+L+L GP GTGK T +AL + GP
Sbjct: 4 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 63
Query: 74 N-YR 76
YR
Sbjct: 64 GVYR 67
>CGD|CAL0004366 [details] [associations]
symbol:RFC5 species:5476 "Candida albicans" [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0003689
"DNA clamp loader activity" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 CGD:CAL0004366
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111
eggNOG:COG0470 EMBL:AACQ01000031 SUPFAM:SSF48019 Pfam:PF08542
RefSeq:XP_719478.1 ProteinModelPortal:Q5AD38 STRING:Q5AD38
GeneID:3638890 KEGG:cal:CaO19.2029 Uniprot:Q5AD38
Length = 362
Score = 178 (67.7 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 66/225 (29%), Positives = 110/225 (48%)
Query: 111 KH--KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFS 168
KH K+V+++EADS++ AQ ALRRTME YS++ R L CN S II PI+SR +VR
Sbjct: 130 KHRFKIVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIAPIKSRTLLVRIP 189
Query: 169 RLSDEEILSRLMVVVQEEKVPY-------VPEGLEAIIFTADGDMRQALNNLQATYSGFR 221
S + I L V ++E + + + I T++ ++R+ L + +
Sbjct: 190 SPSVDNINHILGHVAEKESLKFSTHNDSEINHFYSKIAETSNRNLRRCLLSFETISMQNE 249
Query: 222 FVN-QENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQ-LYDL-GYS-PTDII--TT 275
+N + +V K+ + ++NM ++ + + + + LY+L + P II T
Sbjct: 250 TINVRSDVAKIALDWEAI-IRNMAISIQKNQNVATLAKTRVVLYELLSHCIPARIILKTL 308
Query: 276 LFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAK 320
LF +I + L E + +A R+ G S L G +AK
Sbjct: 309 LFDLIDIFSNNNELVSELINQASIFDERLSLGSKSIFHLEGFVAK 353
Score = 116 (45.9 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 15 WVEKYRPTKVCDIVGNLDAVAR-LGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
WV+KYRP + D + D++ L +A+ G+ P+L++ GP G+GK T I +E+ GP
Sbjct: 4 WVDKYRP-RTLDQLTYHDSITNSLRALAKSGDFPHLLVYGPSGSGKKTRIYCTLNEIFGP 62
Query: 74 NYREAVMEL 82
+ +++
Sbjct: 63 QVEKLKIDV 71
Score = 38 (18.4 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 280 IKNYEMAEHLKLEFMKEAGFAHMRI 304
+KN+ + + KLEF + H+ I
Sbjct: 71 VKNFVTSSNRKLEFNVLSSSNHLEI 95
>POMBASE|SPBC83.14c [details] [associations]
symbol:rfc5 "DNA replication factor C complex subunit
Rfc5 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0003689 "DNA clamp
loader activity" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006272 "leading strand
elongation" evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] InterPro:IPR008921 InterPro:IPR013748
PomBase:SPBC83.14c GO:GO:0005829 EMBL:CU329671 GO:GO:0006281
GenomeReviews:CU329671_GR GO:GO:0000790 GO:GO:0043596 KO:K10756
eggNOG:COG0470 GO:GO:0003689 GO:GO:0031390 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 HOGENOM:HOG000224153 OMA:TRIMCLL PIR:T40703
RefSeq:NP_595646.1 ProteinModelPortal:O94697 STRING:O94697
EnsemblFungi:SPBC83.14c.1 GeneID:2540215 KEGG:spo:SPBC83.14c
OrthoDB:EOG4R273P NextBio:20801347 Uniprot:O94697
Length = 358
Score = 186 (70.5 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 52/143 (36%), Positives = 81/143 (56%)
Query: 80 MELNASDDRGID--VVRNKIKMFAQK-KVTLPPGK-HKVVVLDEADSMTAGAQQALRRTM 135
+E+ SD D +++ +K AQ +V L K KVVV++ AD +T AQ ALRRTM
Sbjct: 92 LEITPSDVGNYDRVIMQELLKDVAQSAQVDLQAKKIFKVVVINVADELTRDAQAALRRTM 151
Query: 136 EIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGL 195
E YSN+ R L N +SKIIEPI+SR +VR + + EEI+ + ++ + + L
Sbjct: 152 EKYSNNIRLILIANSTSKIIEPIRSRTLMVRVAAPTPEEIILVMSKILTAQGLEAPDSLL 211
Query: 196 EAIIFTADGDMRQALNNLQATYS 218
I D ++R+A+ L+ ++
Sbjct: 212 NNIANNCDRNLRKAILLLETVHA 234
Score = 103 (41.3 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
W+++YRP + + + RL ++ P+L++ GP G GK T ++A+ EL GP
Sbjct: 3 WLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYGP 61
>UNIPROTKB|C9JXZ7 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003959 Pfam:PF00004 GO:GO:0005524 EMBL:AC112907
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00795756
ProteinModelPortal:C9JXZ7 SMR:C9JXZ7 STRING:C9JXZ7
Ensembl:ENST00000427785 HOGENOM:HOG000185875 ArrayExpress:C9JXZ7
Bgee:C9JXZ7 Uniprot:C9JXZ7
Length = 123
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 47/89 (52%), Positives = 60/89 (67%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT++ILA A E
Sbjct: 35 AKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARE 94
Query: 70 LLGPN-YREAVMELNASDDRGIDVVRNKI 97
L GP +R V+ELNASD+RGI VVR K+
Sbjct: 95 LFGPELFRLRVLELNASDERGIQVVREKV 123
>GENEDB_PFALCIPARUM|PF11_0117 [details] [associations]
symbol:PF11_0117 "replication factor C subunit
5, putative" species:5833 "Plasmodium falciparum" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006271 "DNA strand elongation involved
in DNA replication" evidence=ISS] KO:K10756 EMBL:AE014186
GO:GO:0006271 GO:GO:0005663 RefSeq:XP_001347790.1
ProteinModelPortal:Q8IIQ1 EnsemblProtists:PF11_0117:mRNA
GeneID:810666 KEGG:pfa:PF11_0117 EuPathDB:PlasmoDB:PF3D7_1111100
HOGENOM:HOG000282249 OMA:CIMALEM ProtClustDB:CLSZ2432864
Uniprot:Q8IIQ1
Length = 349
Score = 148 (57.2 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
Identities = 37/106 (34%), Positives = 60/106 (56%)
Query: 112 HKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLS 171
+++ V +A+ ++ GAQ LRRT+E Y + R L SKIIEP++SRC +R S
Sbjct: 126 YRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKSRCICIRVPLPS 185
Query: 172 DEEILSRLMVVVQEEKV-PYVP--EGLEAIIFTADGDMRQALNNLQ 214
+EEI S L + ++E V P E + +I T ++R+ + L+
Sbjct: 186 EEEIYSVLQNICKQENVSPSFSTYEYFQTLINTHGRNLRKCIMALE 231
Score = 108 (43.1 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
Identities = 27/90 (30%), Positives = 45/90 (50%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKY P + ++ + D RL ++R ++P++I G PG GK+T I L E+
Sbjct: 2 WLEKYSPQSIDELTIHKDITERLRKLSRHKDLPHIIFYGAPGGGKSTRINCLIKEIFKDE 61
Query: 75 --YREAVMELNASDDRGIDVVRNKIKMFAQ 102
R NA + I+VV++ + Q
Sbjct: 62 KIIRRPECITNAENKININVVQSNYHLELQ 91
>UNIPROTKB|Q8IIQ1 [details] [associations]
symbol:PF11_0117 "Replication factor C subunit 5, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISS] KO:K10756 EMBL:AE014186
GO:GO:0006271 GO:GO:0005663 RefSeq:XP_001347790.1
ProteinModelPortal:Q8IIQ1 EnsemblProtists:PF11_0117:mRNA
GeneID:810666 KEGG:pfa:PF11_0117 EuPathDB:PlasmoDB:PF3D7_1111100
HOGENOM:HOG000282249 OMA:CIMALEM ProtClustDB:CLSZ2432864
Uniprot:Q8IIQ1
Length = 349
Score = 148 (57.2 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
Identities = 37/106 (34%), Positives = 60/106 (56%)
Query: 112 HKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLS 171
+++ V +A+ ++ GAQ LRRT+E Y + R L SKIIEP++SRC +R S
Sbjct: 126 YRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKSRCICIRVPLPS 185
Query: 172 DEEILSRLMVVVQEEKV-PYVP--EGLEAIIFTADGDMRQALNNLQ 214
+EEI S L + ++E V P E + +I T ++R+ + L+
Sbjct: 186 EEEIYSVLQNICKQENVSPSFSTYEYFQTLINTHGRNLRKCIMALE 231
Score = 108 (43.1 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
Identities = 27/90 (30%), Positives = 45/90 (50%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKY P + ++ + D RL ++R ++P++I G PG GK+T I L E+
Sbjct: 2 WLEKYSPQSIDELTIHKDITERLRKLSRHKDLPHIIFYGAPGGGKSTRINCLIKEIFKDE 61
Query: 75 --YREAVMELNASDDRGIDVVRNKIKMFAQ 102
R NA + I+VV++ + Q
Sbjct: 62 KIIRRPECITNAENKININVVQSNYHLELQ 91
>UNIPROTKB|P09122 [details] [associations]
symbol:dnaX "DNA polymerase III subunit gamma/tau"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AL009126
GenomeReviews:AL009126_GR GO:GO:0017111 GO:GO:0003887 EMBL:D26185
GO:GO:0009360 EMBL:X17014 EMBL:X06803 EMBL:X52144 PIR:I40469
PIR:S13786 RefSeq:NP_387900.2 ProteinModelPortal:P09122 SMR:P09122
IntAct:P09122 EnsemblBacteria:EBBACT00000003868 GeneID:936899
KEGG:bsu:BSU00190 PATRIC:18971499 GenoList:BSU00190 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563
BioCyc:BSUB:BSU00190-MONOMER SUPFAM:SSF48019 TIGRFAMs:TIGR02397
Uniprot:P09122
Length = 563
Score = 207 (77.9 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 72/228 (31%), Positives = 116/228 (50%)
Query: 79 VMELNASDDRGIDVVRN---KIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTM 135
V+E++A+ + G+D +R+ K+K FA VT +KV ++DE ++ GA AL +T+
Sbjct: 90 VIEIDAASNNGVDEIRDIRDKVK-FAPSAVT-----YKVYIIDEVHMLSIGAFNALLKTL 143
Query: 136 EIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG- 194
E F LA KI I SRC F R++ + I+ R+ +V E++ V EG
Sbjct: 144 EEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAIVGRMNKIVDAEQLQ-VEEGS 202
Query: 195 LEAIIFTADGDMRQALNNL-QA-TYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
LE I ADG MR AL+ L QA ++SG + E+ + L++ + +++ +
Sbjct: 203 LEIIASAADGGMRDALSLLDQAISFSG-DILKVEDALLITGAVSQLYIGKLAKSLHDKNV 261
Query: 253 DDACSGLKQLYDLGYSPTDIITTL---FRIIKNYEMAEHLK--LEFMK 295
DA L +L G P +I + FR + Y+ A L+ LE +K
Sbjct: 262 SDALETLNELLQQGKDPAKLIEDMIFYFRDMLLYKTAPGLEGVLEKVK 309
Score = 158 (60.7 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 67/218 (30%), Positives = 95/218 (43%)
Query: 19 YRPTKVCDIVGNLDAVARLGIIARDGNMPNLIL-AGPPGTGKTTS--ILALA----HELL 71
+RP + D+VG L + L +GP GTGKT++ I A A H +
Sbjct: 10 FRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNCEHAPV 69
Query: 72 GPNYREA-----VMELNASDDRGIDVVRN----KIKMFAQKKVTLPPG-KHKVVVLDEAD 121
E + + SD ID N +I+ K P +KV ++DE
Sbjct: 70 DEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKVYIIDEVH 129
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
++ GA AL +T+E F LA KI I SRC F R++ + I+ R+
Sbjct: 130 MLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAIVGRMNK 189
Query: 182 VVQEEKVPYVPEG-LEAIIFTADGDMRQALNNLQATYS 218
+V E++ V EG LE I ADG MR AL+ L S
Sbjct: 190 IVDAEQLQ-VEEGSLEIIASAADGGMRDALSLLDQAIS 226
>UNIPROTKB|Q2GDS0 [details] [associations]
symbol:NSE_0492 "Putative DNA polymerase III, gamma/tau
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006259 "DNA metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0017111
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_506376.1 ProteinModelPortal:Q2GDS0 STRING:Q2GDS0
GeneID:3931782 KEGG:nse:NSE_0492 PATRIC:22681033
HOGENOM:HOG000127275 OMA:IKEEIWI ProtClustDB:CLSK2528078
BioCyc:NSEN222891:GHFU-512-MONOMER Uniprot:Q2GDS0
Length = 396
Score = 197 (74.4 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 81/284 (28%), Positives = 127/284 (44%)
Query: 40 IARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREA-------------------VM 80
IARD ++L+GP GTGKTT+ A+ LL N A ++
Sbjct: 32 IARDEVAGAILLSGPYGTGKTTTARAVTLSLLCLNRTSALPCLKCDSCISILSGSHPDIL 91
Query: 81 ELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSN 140
E++A+ + G++ VR I+ K + K+K ++DE ++ A AL + +E
Sbjct: 92 EIDAASNTGVEDVRMLIEGALYKPLL---SKYKSYIVDEVHMLSQSAFSALLKLLEEPPQ 148
Query: 141 STRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIF 200
+F LA KI I SRC R SRLS I RL V ++E++ + ++ I
Sbjct: 149 HVKFFLATTELQKIPATIISRCQHYRLSRLSRVVIAERLTQVAEKEQIEITQDAIKFIAE 208
Query: 201 TADGDMRQALNNL-QATY---SGFRFVNQ-ENVFKVCDQPHPLHVKNMVRNVLEGKFDDA 255
ADG +R AL+ L Q T G V+ N + D V ++ +++ G +
Sbjct: 209 KADGSLRDALSLLEQVTLHPSEGKITVHVLRNKMGLVDLSE---VYMLLDSIIAGDCKTS 265
Query: 256 CSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGF 299
L LY GY I L +I N ++ + L E ++GF
Sbjct: 266 LGKLNDLYSKGYEMLTIFMELVALI-NEKIQDKLTAEDSSKSGF 308
>TIGR_CMR|NSE_0492 [details] [associations]
symbol:NSE_0492 "putative DNA polymerase III, gamma/tau
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006259 "DNA metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0017111
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_506376.1 ProteinModelPortal:Q2GDS0 STRING:Q2GDS0
GeneID:3931782 KEGG:nse:NSE_0492 PATRIC:22681033
HOGENOM:HOG000127275 OMA:IKEEIWI ProtClustDB:CLSK2528078
BioCyc:NSEN222891:GHFU-512-MONOMER Uniprot:Q2GDS0
Length = 396
Score = 197 (74.4 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 81/284 (28%), Positives = 127/284 (44%)
Query: 40 IARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREA-------------------VM 80
IARD ++L+GP GTGKTT+ A+ LL N A ++
Sbjct: 32 IARDEVAGAILLSGPYGTGKTTTARAVTLSLLCLNRTSALPCLKCDSCISILSGSHPDIL 91
Query: 81 ELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSN 140
E++A+ + G++ VR I+ K + K+K ++DE ++ A AL + +E
Sbjct: 92 EIDAASNTGVEDVRMLIEGALYKPLL---SKYKSYIVDEVHMLSQSAFSALLKLLEEPPQ 148
Query: 141 STRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIF 200
+F LA KI I SRC R SRLS I RL V ++E++ + ++ I
Sbjct: 149 HVKFFLATTELQKIPATIISRCQHYRLSRLSRVVIAERLTQVAEKEQIEITQDAIKFIAE 208
Query: 201 TADGDMRQALNNL-QATY---SGFRFVNQ-ENVFKVCDQPHPLHVKNMVRNVLEGKFDDA 255
ADG +R AL+ L Q T G V+ N + D V ++ +++ G +
Sbjct: 209 KADGSLRDALSLLEQVTLHPSEGKITVHVLRNKMGLVDLSE---VYMLLDSIIAGDCKTS 265
Query: 256 CSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGF 299
L LY GY I L +I N ++ + L E ++GF
Sbjct: 266 LGKLNDLYSKGYEMLTIFMELVALI-NEKIQDKLTAEDSSKSGF 308
>UNIPROTKB|G4NAB7 [details] [associations]
symbol:MGG_03202 "Replication factor C subunit 5"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
KO:K10756 GO:GO:0017111 EMBL:CM001234 SUPFAM:SSF48019 Pfam:PF08542
RefSeq:XP_003716781.1 ProteinModelPortal:G4NAB7
EnsemblFungi:MGG_03202T0 GeneID:2676506 KEGG:mgr:MGG_03202
Uniprot:G4NAB7
Length = 352
Score = 194 (73.4 bits), Expect = 3.3e-13, P = 3.3e-13
Identities = 75/257 (29%), Positives = 126/257 (49%)
Query: 80 MELNASDDRGID--VVRNKIKMFAQKKVTLPPG---KHKVVVLDEADSMTAGAQQALRRT 134
+E+ SD D V+++ +K AQ + + G + KVVV++EAD ++ AQ ALRRT
Sbjct: 93 LEITPSDVGNYDRVVIQDLLKEVAQTQ-QVDQGARQRFKVVVINEADHLSRDAQAALRRT 151
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME YS + R L N ++ II PI+SR +VR + S++EI + L ++E +
Sbjct: 152 MEKYSPNLRLILLANSTANIIAPIRSRTLLVRVAAPSEDEICTVLAASAKKEGWTVSTQL 211
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
E I + ++R+AL L+ ++ V D L + + + ++E
Sbjct: 212 HERIAKESGRNLRRALLMLETVHAQNEKVEDNTPIPPPDW-EAL-IGQIAKEIMEEHTPA 269
Query: 255 ACSGLK-QLYDL---GYSPTDIITTL-FRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
++ +LYDL PT I+ TL F+++ + + LK+E +K + F RI G
Sbjct: 270 RILQVRAKLYDLLTHCIPPTTILKTLTFKLVPLID--DDLKVEVIKWSAFYEHRIKMGTK 327
Query: 310 SYLQLCGLLAKLSIVRE 326
L +AK + E
Sbjct: 328 VIFHLEAFVAKFMRILE 344
>UNIPROTKB|F1P3C0 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0046683 "response
to organophosphorus" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 GO:GO:0046683
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
OMA:TRIMCLL EMBL:AADN02005263 IPI:IPI00593478 PRIDE:F1P3C0
Ensembl:ENSGALT00000027564 Uniprot:F1P3C0
Length = 356
Score = 193 (73.0 bits), Expect = 4.6e-13, P = 4.6e-13
Identities = 56/144 (38%), Positives = 76/144 (52%)
Query: 71 LGPNYREAVMELNASDDRGID--VVRNKIKMFAQKKV--TLPPGKHKVVVLDEADSMTAG 126
+ NY +E+N SD D V++ +K AQ + T KVV+L E D +T
Sbjct: 87 IASNYH---LEVNPSDAGNNDRVVIQELLKTVAQSQQLETSTQRDFKVVLLTEVDKLTKD 143
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQ ALRRTME Y + R L CN SKII PIQSRC VR S E+I L V ++E
Sbjct: 144 AQHALRRTMEKYMATCRLILCCNSISKIIGPIQSRCLSVRVPAPSIEDICHVLSSVCKKE 203
Query: 187 KVPYVPEGLEAIIFTADGDMRQAL 210
+ PE + + + ++R+AL
Sbjct: 204 GLNLPPELAQRLAEKSGRNLRKAL 227
Score = 117 (46.2 bits), Expect = 0.00029, P = 0.00029
Identities = 32/118 (27%), Positives = 57/118 (48%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WV+KYRP+ + + + + A+L + + G+ P+L++ GP G GK T I+ L EL G
Sbjct: 4 WVDKYRPSALSRLDFHREQAAQLRSLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGAG 63
Query: 75 YREAVME---LNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
+ +E + A + I++ + + G + VV+ E A +QQ
Sbjct: 64 VEKLRIEHQSITAPSKKKIEISTIASNYHLEVNPS-DAGNNDRVVIQELLKTVAQSQQ 120
>TIGR_CMR|ECH_0014 [details] [associations]
symbol:ECH_0014 "DNA polymerase III, subunits gamma and
tau" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003583
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00278 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0006260 GO:GO:0006281 GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 RefSeq:YP_506849.1
ProteinModelPortal:Q2GI84 STRING:Q2GI84 GeneID:3926952
KEGG:ech:ECH_0014 PATRIC:20575601 OMA:HPDVIEI ProtClustDB:PRK14964
BioCyc:ECHA205920:GJNR-14-MONOMER Uniprot:Q2GI84
Length = 505
Score = 176 (67.0 bits), Expect = 5.9e-13, Sum P(2) = 5.9e-13
Identities = 68/257 (26%), Positives = 122/257 (47%)
Query: 48 NLILAGPPGTGKTTS--ILALAHELL-GP-----NYRE---AVMELNASDDRGIDVVRNK 96
+++L G G GKTT+ I+++ + GP N + ++ N D ID N
Sbjct: 50 SILLTGISGVGKTTAARIISMCLNCISGPTSDPCNTCQNCISIKNFNHPDVIEIDAASNT 109
Query: 97 ----IKMFAQKKVTLP-PGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVS 151
+K+ + +P K KV ++DE ++ A AL + +E + +F LA
Sbjct: 110 SIEDVKVILENSRYMPISSKFKVYIIDEVHMLSNSAFNALLKVLEEPAPYVKFILATTEV 169
Query: 152 SKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALN 211
KI I SRC F R+S ++++ L VV ++E V + E ++ I + ADG +R AL+
Sbjct: 170 KKIPVTIISRCQRFDFQRISTDKLVDHLKVVAKKENVSFDEESIKLIAYNADGSIRNALS 229
Query: 212 NLQ--ATYSGFRFVNQENVFKVCDQPHPLH-VKNMVRNVLEGKFDDACSGLKQLYDLGYS 268
L+ A YS + EN+ K H + ++ ++ G +A + ++ + Y+
Sbjct: 230 LLEQAAIYSNK--ILSENITKEMLGYVSRHTLLEIIEPLIIGNATEALNKFEEACN-SYN 286
Query: 269 PTDIITTLFRIIKNYEM 285
I+ + +II YE+
Sbjct: 287 SVIILDNMLQII--YEI 301
Score = 61 (26.5 bits), Expect = 5.9e-13, Sum P(2) = 5.9e-13
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 18 KYRPTKVCDIVGNLDAVARLGIIARDGNMP-NLILAGPPGTGKTTS 62
KYRP+ D++G V L +P +++L G G GKTT+
Sbjct: 19 KYRPSNFKDLIGQEVLVRVLHNAFHLNKIPESILLTGISGVGKTTA 64
>SGD|S000005743 [details] [associations]
symbol:RFC1 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000278 "mitotic cell cycle"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IEA] [GO:0051301
"cell division" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA;IDA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=TAS] [GO:0006281 "DNA
repair" evidence=IMP] [GO:0006272 "leading strand elongation"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 SGD:S000005743 Pfam:PF00533 GO:GO:0005524
GO:GO:0005634 EMBL:BK006948 GO:GO:0051301 GO:GO:0006298 EMBL:X92441
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0000278 GO:GO:0003689
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 PDB:1SXJ PDBsum:1SXJ
KO:K10754 eggNOG:COG5275 HOGENOM:HOG000164552 OMA:KLRMDER
OrthoDB:EOG4WDHM8 EMBL:U03102 EMBL:U26027 EMBL:Z75125 PIR:S44763
RefSeq:NP_014860.1 ProteinModelPortal:P38630 SMR:P38630
DIP:DIP-2527N IntAct:P38630 MINT:MINT-619267 STRING:P38630
PaxDb:P38630 PeptideAtlas:P38630 EnsemblFungi:YOR217W GeneID:854392
KEGG:sce:YOR217W CYGD:YOR217w EvolutionaryTrace:P38630
NextBio:976553 Genevestigator:P38630 GermOnline:YOR217W
Uniprot:P38630
Length = 861
Score = 192 (72.6 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 58/195 (29%), Positives = 93/195 (47%)
Query: 50 ILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDV----VRNKIKMFA---- 101
+L GPPG GKTT+ +A EL Y ++E NASD R + V+N + +
Sbjct: 350 MLYGPPGIGKTTAAHLVAQEL---GYD--ILEQNASDVRSKTLLNAGVKNALDNMSVVGY 404
Query: 102 ---QKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY-SNSTRFALACNVSS-KIIE 156
++ GKH V+++DE D M+ G + + + + ST L CN + +
Sbjct: 405 FKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMR 464
Query: 157 PIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT 216
P C ++F R I SRLM + EK P ++ +I T GD+RQ +N L
Sbjct: 465 PFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTI 524
Query: 217 YSGFRFVNQENVFKV 231
+ + +N EN+ ++
Sbjct: 525 STTTKTINHENINEI 539
>TIGR_CMR|BA_0019 [details] [associations]
symbol:BA_0019 "DNA polymerase III, gamma and tau subunits"
species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 PRINTS:PR00300 SMART:SM00382 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 HSSP:P06710 RefSeq:NP_842590.1
RefSeq:YP_016623.1 RefSeq:YP_026309.1 ProteinModelPortal:Q81W18
IntAct:Q81W18 DNASU:1089003 EnsemblBacteria:EBBACT00000011079
EnsemblBacteria:EBBACT00000018474 EnsemblBacteria:EBBACT00000022003
GeneID:1089003 GeneID:2819477 GeneID:2849405 KEGG:ban:BA_0019
KEGG:bar:GBAA_0019 KEGG:bat:BAS0021 OMA:QTSHAYL
BioCyc:BANT260799:GJAJ-24-MONOMER BioCyc:BANT261594:GJ7F-25-MONOMER
Uniprot:Q81W18
Length = 562
Score = 189 (71.6 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 71/243 (29%), Positives = 110/243 (45%)
Query: 50 ILAGPPGTGKTT--SILALA----HELLGPNYREA-------------VMELNASDDRGI 90
+ +GP GTGKTT + A A H + E V+E++A+ + G+
Sbjct: 42 LFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGV 101
Query: 91 DVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALAC 148
D +R+ + KV P ++KV ++DE ++ GA AL +T+E F LA
Sbjct: 102 DEIRD-----IRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILAT 156
Query: 149 NVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQ 208
KI I SRC F ++S +I+ RL VV E E L+ + A+G MR
Sbjct: 157 TEPHKIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRD 216
Query: 209 ALNNL-QA-TYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLG 266
AL+ + QA +YS R V E+V V ++ N+V + E A + ++ G
Sbjct: 217 ALSLIDQAISYSDER-VTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKG 275
Query: 267 YSP 269
P
Sbjct: 276 KDP 278
>UNIPROTKB|E7DN81 [details] [associations]
symbol:E7DN81 "DnaX DNA polymerase III clamp loader complex
gamma-tau-delta subunit" species:59241 "Streptococcus phage Dp-1"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 EMBL:HQ268735
RefSeq:YP_004306905.1 IntAct:E7DN81 GeneID:10358613 Uniprot:E7DN81
Length = 341
Score = 180 (68.4 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 67/262 (25%), Positives = 121/262 (46%)
Query: 18 KYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNYR 76
KYRP ++V L ++G + + + G GTGKTT+ A ++
Sbjct: 6 KYRPQTFEEVVAQEYVKEILLNQLQNGAIKHGYLFCGGAGTGKTTTARIFAKDV--NKGL 63
Query: 77 EAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTME 136
+ +E++A+ + G++ VRN I+ K + + KV ++DE ++ GA AL +T+E
Sbjct: 64 GSPIEIDAASNNGVENVRNIIEDSRYKSMD---SEFKVYIIDEVHMLSTGAFNALLKTLE 120
Query: 137 IYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK-----VPYV 191
S+ T F L KI + I SR F+R+ +++I+++L +++ E Y
Sbjct: 121 EPSSGTVFILCTTDPQKIPDTILSRVQRFDFTRIDNDDIVNQLQFIIESENEEGAGYSYE 180
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+ L I A+G MR ++ L+ V+ E V P ++V +
Sbjct: 181 RDALSFIGKLANGGMRDSITRLEKVLDYSHHVDMEAVSNALGVPDYETFASLVEAI--AN 238
Query: 252 FDDA-CSGLKQLYDLGYSPTDI 272
+D + C L+ + D YS D+
Sbjct: 239 YDGSKC--LEIVNDFHYSGKDL 258
>TIGR_CMR|CHY_2675 [details] [associations]
symbol:CHY_2675 "putative DNA polymerase III, gamma/tau
subunits" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006260 "DNA replication" evidence=ISS] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 RefSeq:YP_361464.1 ProteinModelPortal:Q3A8S0
STRING:Q3A8S0 GeneID:3728788 KEGG:chy:CHY_2675 PATRIC:21278371
OMA:DICHAIN BioCyc:CHYD246194:GJCN-2674-MONOMER Uniprot:Q3A8S0
Length = 511
Score = 182 (69.1 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 59/183 (32%), Positives = 92/183 (50%)
Query: 50 ILAGPPGTGKTTS--ILALA----HEL-----------LGPNYREA--VMELNASDDRGI 90
+ +GP GTGKTT+ +LA A H + +G N + V E++A+ +RGI
Sbjct: 41 LFSGPRGTGKTTTAKVLAKAVNCEHPVEGEPCNQCPSCIGINNQSLLNVFEIDAASNRGI 100
Query: 91 DVVRNKIKMFAQKKVTLPP--GKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALAC 148
D +R ++ + L P GK+KV ++DE +T A AL +T+E F LA
Sbjct: 101 DEIRE-----LRESIKLVPAQGKYKVYIIDEVHMLTNEAFNALLKTLEEPPEHVIFILAT 155
Query: 149 NVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQ 208
+K+ I SRC F R+S + I L + ++EK+ Y E L I ++G +R
Sbjct: 156 TEFNKVPVTIVSRCQRFDFKRISTKTIWEHLKNIAEKEKLQYEAEALHLIAEASEGGLRD 215
Query: 209 ALN 211
AL+
Sbjct: 216 ALS 218
>TIGR_CMR|DET_0585 [details] [associations]
symbol:DET_0585 "DNA polymerase III, gamma and tau
subunits, putative" species:243164 "Dehalococcoides ethenogenes
195" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0009360 "DNA polymerase III complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_181327.1 ProteinModelPortal:Q3Z8X2 STRING:Q3Z8X2
GeneID:3230093 KEGG:det:DET0585 PATRIC:21608239 OMA:ISGDERI
ProtClustDB:PRK14950 BioCyc:DETH243164:GJNF-586-MONOMER
Uniprot:Q3Z8X2
Length = 559
Score = 155 (59.6 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 53/186 (28%), Positives = 87/186 (46%)
Query: 79 VMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY 138
V+E++A+ + G+D +R ++K Q L +KV ++DE ++ A AL +T+E
Sbjct: 91 VIEIDAASNTGVDDIR-ELKEKVQYAPAL--ANYKVYIIDEVHMLSNSASNALLKTLEEP 147
Query: 139 SNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAI 198
F LA K++ I SRC F R+S ++ +L + Q E + PE L+ I
Sbjct: 148 PPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLSDMSRKLEKISQAEGINIEPEALKLI 207
Query: 199 IFTADGDMRQALNNLQ--ATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDAC 256
+A G R N LQ AT G ++ V +K + N+L+ D
Sbjct: 208 ARSAGGSFRDGENLLQQIATTYGTE-ISLPQVQAALGISGDERIKTLAENILK---KDIK 263
Query: 257 SGLKQL 262
+GL+ L
Sbjct: 264 NGLQTL 269
Score = 67 (28.6 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 18 KYRPTKVCDIVGNLDAVARLGIIARDGNMPNLIL-AGPPGTGKTTS--ILALA 67
K+RP + D+VG L G + L GP GTGKT++ ILA A
Sbjct: 9 KWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKA 61
>GENEDB_PFALCIPARUM|PFB0895c [details] [associations]
symbol:PFB0895c "replication factor C subunit 1,
putative" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003689 EMBL:AE001362 HSSP:P26996 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 PIR:D71603 RefSeq:XP_001349697.1
ProteinModelPortal:O96271 PRIDE:O96271
EnsemblProtists:PFB0895c:mRNA GeneID:812779 KEGG:pfa:PFB0895c
EuPathDB:PlasmoDB:PF3D7_0219600 HOGENOM:HOG000284296 OMA:YNYEKKD
ProtClustDB:CLSZ2733780 Uniprot:O96271
Length = 904
Score = 159 (61.0 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 48/185 (25%), Positives = 90/185 (48%)
Query: 50 ILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPP 109
+L+GP G GKTT+ + E G N V+E NASD+R V +M +
Sbjct: 411 LLSGPAGIGKTTTA-KIVSEASGYN----VIEFNASDERNKAAVEKISEMATGGYSIMSL 465
Query: 110 GKHKV----VVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKI---IEPIQSRC 162
K+ +++DE D M++G + +++ T+ + C + + + + ++C
Sbjct: 466 NNRKLTKTCIIMDEVDGMSSGDKGGSTAILKLIEK-TKCPIICICNDRQNNKMRTLANKC 524
Query: 163 AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQA---TYSG 219
++FS ++ RL+ + ++E + P LE + + GD+RQ LN LQ TY+
Sbjct: 525 YDLKFSMPQKNSVVKRLLEICKKEGIMMEPNALELLWESTCGDIRQMLNTLQLLSKTYTR 584
Query: 220 FRFVN 224
+F++
Sbjct: 585 IQFLD 589
Score = 65 (27.9 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARL 37
WVEKYRP + ++VGN V +L
Sbjct: 353 WVEKYRPKNLNELVGNNQNVIKL 375
>UNIPROTKB|O96271 [details] [associations]
symbol:PFB0895c "Replication factor C subunit 1, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003689 EMBL:AE001362 HSSP:P26996 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 PIR:D71603 RefSeq:XP_001349697.1
ProteinModelPortal:O96271 PRIDE:O96271
EnsemblProtists:PFB0895c:mRNA GeneID:812779 KEGG:pfa:PFB0895c
EuPathDB:PlasmoDB:PF3D7_0219600 HOGENOM:HOG000284296 OMA:YNYEKKD
ProtClustDB:CLSZ2733780 Uniprot:O96271
Length = 904
Score = 159 (61.0 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 48/185 (25%), Positives = 90/185 (48%)
Query: 50 ILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPP 109
+L+GP G GKTT+ + E G N V+E NASD+R V +M +
Sbjct: 411 LLSGPAGIGKTTTA-KIVSEASGYN----VIEFNASDERNKAAVEKISEMATGGYSIMSL 465
Query: 110 GKHKV----VVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKI---IEPIQSRC 162
K+ +++DE D M++G + +++ T+ + C + + + + ++C
Sbjct: 466 NNRKLTKTCIIMDEVDGMSSGDKGGSTAILKLIEK-TKCPIICICNDRQNNKMRTLANKC 524
Query: 163 AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQA---TYSG 219
++FS ++ RL+ + ++E + P LE + + GD+RQ LN LQ TY+
Sbjct: 525 YDLKFSMPQKNSVVKRLLEICKKEGIMMEPNALELLWESTCGDIRQMLNTLQLLSKTYTR 584
Query: 220 FRFVN 224
+F++
Sbjct: 585 IQFLD 589
Score = 65 (27.9 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARL 37
WVEKYRP + ++VGN V +L
Sbjct: 353 WVEKYRPKNLNELVGNNQNVIKL 375
>TIGR_CMR|SPO_3550 [details] [associations]
symbol:SPO_3550 "DNA polymerase III, gamma and tau
subunits" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
ProtClustDB:PRK09111 InterPro:IPR022107 Pfam:PF12362
RefSeq:YP_168745.1 ProteinModelPortal:Q5LML3 GeneID:3193201
KEGG:sil:SPO3550 PATRIC:23380573 OMA:FTHLVTR Uniprot:Q5LML3
Length = 583
Score = 138 (53.6 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 46/202 (22%), Positives = 86/202 (42%)
Query: 79 VMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY 138
VME++A+ G++ +R I + + ++K+ ++DE ++ A AL +T+E
Sbjct: 101 VMEMDAASRTGVNDIREIIDSVRYRAAS---ARYKIYIIDEVHMLSTSAFNALLKTLEEP 157
Query: 139 SNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAI 198
+F A K+ + SRC R+ E++++ + + E + L I
Sbjct: 158 PAHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEPEDMIALMRRIADAEGAQIAEDALALI 217
Query: 199 IFTADGDMRQALNNL-QATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACS 257
+ A+G R A + L QA G + E V + V +++ +L G A +
Sbjct: 218 VRAAEGSARDATSLLDQAISHGAGETSAEQVRAMLGLADRGRVLDLMDMILRGDAGAALT 277
Query: 258 GLKQLYDLGYSPTDIITTLFRI 279
L Y G P ++ L I
Sbjct: 278 ELGAQYAEGADPMAVLRDLAEI 299
Score = 83 (34.3 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 24/61 (39%), Positives = 31/61 (50%)
Query: 18 KYRPTKVCDIVGNLDAVARL--GIIARDGNMPNLILAGPPGTGKTTS--ILALAHELLGP 73
KYRP D+VG DA+ R A D I+ G GTGKTT+ I+A +GP
Sbjct: 15 KYRPETFADLVGQ-DAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNCIGP 73
Query: 74 N 74
+
Sbjct: 74 D 74
>TAIR|locus:2032432 [details] [associations]
symbol:AT1G24290 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR000449 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR009060 Pfam:PF00004 Pfam:PF00627 SMART:SM00382
EMBL:CP002684 GO:GO:0005524 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 GO:GO:0017111 SUPFAM:SSF46934 EMBL:AC002396
UniGene:At.41453 UniGene:At.63976 HOGENOM:HOG000017623 KO:K07478
InterPro:IPR021886 Pfam:PF12002 IPI:IPI00523189 PIR:T00660
RefSeq:NP_173839.1 HSSP:Q56313 ProteinModelPortal:O48696 SMR:O48696
STRING:O48696 PRIDE:O48696 EnsemblPlants:AT1G24290.1 GeneID:839045
KEGG:ath:AT1G24290 TAIR:At1g24290 InParanoid:O48696 OMA:FEVIAPL
PhylomeDB:O48696 ProtClustDB:CLSN2682390 Genevestigator:O48696
Uniprot:O48696
Length = 525
Score = 174 (66.3 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 70/242 (28%), Positives = 109/242 (45%)
Query: 14 PWVEKYRPTKVCDIVGN---LDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
P E+ RP + D+VG L + L +P+++ GPPGTGKT+ +L +
Sbjct: 102 PLSERMRPRTLDDVVGQDHLLSPSSLLRSAVESNRLPSIVFWGPPGTGKTSIAKSLINSS 161
Query: 71 LGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
P+ YR + L+A G+ VR+ ++ + K++ L K V+ +DE Q
Sbjct: 162 KDPSLYR--FVSLSAVTS-GVKDVRDAVE--SAKRLNLEGRKRTVLFMDEVHRFNKSQQD 216
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDE--EILSRLMVVVQEEK 187
+E S A N S +I P+ SRC ++ + L E L R V E
Sbjct: 217 TFLPVIEDGSILFIGATTENPSFHLITPLLSRCRVLTLNPLKPNHVETLLRRAVDDSERG 276
Query: 188 VPYVPEGLEAII-FTA---DGDMRQALNNLQ--ATYSGFRFVNQENVFKVCDQPHPLHVK 241
+P E +++I F A DGD R ALN L+ AT + R + V + D L K
Sbjct: 277 LPNSVEVDDSVIEFLANNCDGDARVALNALEISATMATTR-AGTDAVVSIDDAKEALQCK 335
Query: 242 NM 243
++
Sbjct: 336 HL 337
>ASPGD|ASPL0000029025 [details] [associations]
symbol:AN5617 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:AACD01000098 EMBL:BN001305 GO:GO:0017111
eggNOG:COG2256 HOGENOM:HOG000017623 KO:K07478 OMA:HDEPDAF
InterPro:IPR021886 Pfam:PF12002 OrthoDB:EOG4Z924S
RefSeq:XP_663221.1 ProteinModelPortal:Q5B1G3 STRING:Q5B1G3
EnsemblFungi:CADANIAT00003453 GeneID:2871909 KEGG:ani:AN5617.2
Uniprot:Q5B1G3
Length = 528
Score = 169 (64.5 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 67/213 (31%), Positives = 101/213 (47%)
Query: 14 PWVEKYRPT---KVC--DIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH 68
P E+ RP +VC ++VG V R G+I D +P++IL G PGTGKTT +A
Sbjct: 116 PLAERMRPRTLDEVCGQELVGPT-GVLR-GLIEED-RVPSMILWGGPGTGKTTIARVIA- 171
Query: 69 ELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLP-PGKHKVVVLDEADSMTAGA 127
++G + +E+N S G+ + K+FA K L G+ ++ DE +
Sbjct: 172 SMVGSRF----VEIN-STSTGVAECK---KIFADAKSELGLTGRKTIIFCDEIHRFSKSQ 223
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
Q +E + A N S K+ + SRC S+L+DE+I S L ++ E
Sbjct: 224 QDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTLSKLTDEDIRSILNRALKTEG 283
Query: 188 VPYVPEGL---EAIIFTA---DGDMRQALNNLQ 214
Y P L E + + A DGD R +LN L+
Sbjct: 284 PNYSPSALVDDELLDYLAKFADGDARTSLNLLE 316
>FB|FBgn0004913 [details] [associations]
symbol:Gnf1 "Germ line transcription factor 1" species:7227
"Drosophila melanogaster" [GO:0003677 "DNA binding"
evidence=NAS;IDA] [GO:0005634 "nucleus" evidence=NAS;IDA]
[GO:0006260 "DNA replication" evidence=IEA;NAS] [GO:0005663 "DNA
replication factor C complex" evidence=IEA;NAS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 EMBL:AE014297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005875 GO:GO:0022008
GO:GO:0006355 GO:GO:0003677 GO:GO:0006260 GO:GO:0006351
GO:GO:0046331 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 EMBL:L17340 EMBL:U97685 EMBL:AY122077
EMBL:BT003618 RefSeq:NP_001014605.1 RefSeq:NP_524229.1
UniGene:Dm.2491 ProteinModelPortal:P35600 SMR:P35600 DIP:DIP-18735N
IntAct:P35600 MINT:MINT-961959 STRING:P35600 PaxDb:P35600
EnsemblMetazoa:FBtr0078837 GeneID:40607 KEGG:dme:Dmel_CG1119
CTD:100035172 FlyBase:FBgn0004913 eggNOG:COG5275 InParanoid:P35600
OrthoDB:EOG4S1RP9 GenomeRNAi:40607 NextBio:819627 GermOnline:CG1119
Uniprot:P35600
Length = 986
Score = 159 (61.0 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 58/210 (27%), Positives = 106/210 (50%)
Query: 50 ILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIK-MFAQKKVT-- 106
+L+GPPG GKTT+ + EL + +AV E NASD R ++++++ + + K ++
Sbjct: 484 LLSGPPGIGKTTTATLVVKEL---GF-DAV-EFNASDTRSKRLLKDEVSTLLSNKSLSGY 538
Query: 107 -LPPG-----KHKVVVLDEADSMTAGAQQA-LRRTMEIYSNST-RFALACNVSSKI-IEP 157
G KH V+++DE D M + ++ + + +S+ CN + I
Sbjct: 539 FTGQGQAVSRKH-VLIMDEVDGMAGNEDRGGMQELIALIKDSSIPIICMCNDRNHPKIRS 597
Query: 158 IQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY 217
+ + C +RF R E+I ++M + +EKV P +E II + D+RQ++N++ A
Sbjct: 598 LVNYCYDLRFQRPRLEQIKGKIMSICFKEKVKISPAKVEEIIAATNNDIRQSINHI-ALL 656
Query: 218 SGFRFVNQENVFKVCDQPHPLHVKNMVRNV 247
S +Q++ +V + L +VR V
Sbjct: 657 SAKEDASQKSGQQVATKDLKLGPWEVVRKV 686
Score = 58 (25.5 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARL 37
WV+K++PT + +IVG A + +
Sbjct: 423 WVDKHKPTSIKEIVGQAGAASNV 445
>UNIPROTKB|Q97RF7 [details] [associations]
symbol:dnaX "DNA polymerase III, gamma and tau subunits"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE005672
GenomeReviews:AE005672_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 HSSP:P06710 OMA:QTSHAYL PIR:G95099
RefSeq:NP_345352.1 ProteinModelPortal:Q97RF7
EnsemblBacteria:EBSTRT00000026555 GeneID:930817 KEGG:spn:SP_0865
PATRIC:19706123 Uniprot:Q97RF7
Length = 551
Score = 164 (62.8 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 55/211 (26%), Positives = 97/211 (45%)
Query: 77 EAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGAQQALRRT 134
E V+E++A+ + G+D +R + K T P ++KV ++DE ++ GA AL +T
Sbjct: 87 EDVIEMDAASNNGVDEIRE-----IRDKSTYAPSLARYKVYIIDEVHMLSTGAFNALLKT 141
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
+E + + F LA KI I SR F + ++I + ++++E + PE
Sbjct: 142 LEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQDIKEHIHYILEKENISSEPEA 201
Query: 195 LEAIIFTADGDMRQALNNLQATYS---GFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+E I A+G MR AL+ L S G + ++ + + V + +
Sbjct: 202 VEIIARRAEGGMRDALSILDQALSLTQGNELTTAISE-EITGTISLSALDDYVAALSQQD 260
Query: 252 FDDACSGLKQLYDLGYSPTDIITTLFRIIKN 282
A S L L+D G S T +T L +++
Sbjct: 261 VPKALSCLNLLFDNGKSMTRFVTDLLHYLRD 291
Score = 162 (62.1 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 59/219 (26%), Positives = 97/219 (44%)
Query: 18 KYRPTKVCDIVGNLDAVARL--GIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN- 74
KYR +VG + VA+ + ++ + +GP GTGKT+ A + PN
Sbjct: 8 KYRSQNFSQLVGQ-EVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCPNQ 66
Query: 75 ---------YR-EAVMELNASDDRGIDVVRN----KIKMFAQKKVTLPP-GKHKVVVLDE 119
Y +AV + + D +D N +I+ K P ++KV ++DE
Sbjct: 67 VGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKVYIIDE 126
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
++ GA AL +T+E + + F LA KI I SR F + ++I +
Sbjct: 127 VHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQDIKEHI 186
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS 218
++++E + PE +E I A+G MR AL+ L S
Sbjct: 187 HYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALS 225
>TIGR_CMR|BA_4628 [details] [associations]
symbol:BA_4628 "ATPase, AAA family" species:198094
"Bacillus anthracis str. Ames" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0017111 KO:K07478
ProtClustDB:PRK13342 InterPro:IPR021886 Pfam:PF12002
HOGENOM:HOG000017624 OMA:RLLVIAY RefSeq:NP_846846.1
RefSeq:YP_021276.1 RefSeq:YP_030542.1 ProteinModelPortal:Q81LJ0
SMR:Q81LJ0 DNASU:1085339 EnsemblBacteria:EBBACT00000011786
EnsemblBacteria:EBBACT00000016240 EnsemblBacteria:EBBACT00000022391
GeneID:1085339 GeneID:2814872 GeneID:2851063 KEGG:ban:BA_4628
KEGG:bar:GBAA_4628 KEGG:bat:BAS4294
BioCyc:BANT260799:GJAJ-4350-MONOMER
BioCyc:BANT261594:GJ7F-4499-MONOMER Uniprot:Q81LJ0
Length = 428
Score = 162 (62.1 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 62/218 (28%), Positives = 97/218 (44%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIAR---DGNMPNLILAGPPGTGKTTSILALAHEL 70
P + RPT + +++G V I+ R + ++IL GPPGTGKT+ A+A
Sbjct: 4 PLAHRMRPTNIQEVIGQQHLVGEGKILWRMVQANHFQSMILYGPPGTGKTSIASAIAGST 63
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
G +R ++ + + ++VV + KM +H V++LDE + Q
Sbjct: 64 -GTPFR--LLNAVTHNKKDMEVVVQEAKMH----------RHLVLILDEVHRLDKAKQDF 110
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE-EK-- 187
L +E + A N I I+SRC I L++E++L L +++ EK
Sbjct: 111 LLPHLESGLLTLIGATTSNPFHAINSAIRSRCQIFELHALTEEDLLIGLKRALEDKEKGL 170
Query: 188 ----VPYVPEGLEAIIFTADGDMRQALNNLQ-ATYSGF 220
V PE L + GDMR A N L+ A S F
Sbjct: 171 GEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSF 208
>WB|WBGene00004337 [details] [associations]
symbol:rfc-1 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003689 "DNA clamp loader activity" evidence=IEA] [GO:0005663
"DNA replication factor C complex" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 GO:GO:0005524 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0006260 GO:GO:0000003 GO:GO:0006974 eggNOG:COG0470
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 EMBL:Z75532 PIR:T20230
RefSeq:NP_001256606.1 ProteinModelPortal:Q18841 SMR:Q18841
IntAct:Q18841 MINT:MINT-228102 STRING:Q18841 PaxDb:Q18841
EnsemblMetazoa:C54G10.2a GeneID:179967 KEGG:cel:CELE_C54G10.2
UCSC:C54G10.2 CTD:179967 WormBase:C54G10.2a HOGENOM:HOG000017534
InParanoid:Q18841 OMA:DYAPMLR NextBio:907580 Uniprot:Q18841
Length = 839
Score = 156 (60.0 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 57/206 (27%), Positives = 99/206 (48%)
Query: 41 ARDG-NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKI-- 97
++DG + +L+G PG GKTT +A + LG ++E+NASD R + KI
Sbjct: 334 SQDGTSFKAALLSGSPGVGKTTCAY-MACQQLGLQ----LVEMNASDVRSKKHLEAKIGE 388
Query: 98 --------KMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQA-LRRTMEIYSNSTRFAL 146
+ F KK + H ++++DE D M+ +A + ++I S + +
Sbjct: 389 LSGSHQIEQFFGAKKCAPQDNQKVHHILIMDEVDGMSGNEDRAGISELIQIIKES-KIPI 447
Query: 147 ACNVSSKI---IEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTAD 203
C + + I + + C +RF + E I SR+M + +EK+ E L+ II +
Sbjct: 448 ICICNDRQHPKIRTLANYCYDLRFPKPRVETIRSRMMTICSQEKMKIGKEELDEIIELSG 507
Query: 204 GDMRQALNNLQATYSGFRF-VNQENV 228
D+RQ + NLQ G +NQ+++
Sbjct: 508 HDVRQTIYNLQMRSKGVGAKINQKDM 533
Score = 52 (23.4 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 13 IPWVEKYRPTKVCDIVG 29
+ WV+KY+P ++ ++VG
Sbjct: 278 LSWVDKYKPKRMGELVG 294
>UNIPROTKB|F1NEP9 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524 GO:GO:0006260
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 EMBL:AADN02015876 EMBL:AADN02015877 EMBL:AADN02015878
EMBL:AADN02015879 EMBL:AADN02015880 IPI:IPI00574416
Ensembl:ENSGALT00000023118 ArrayExpress:F1NEP9 Uniprot:F1NEP9
Length = 1147
Score = 163 (62.4 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 55/176 (31%), Positives = 84/176 (47%)
Query: 50 ILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGI----DVV-----RNKIKMF 100
+L+GPPG GKTT+ + EL G +Y +ELNASD R +VV IK F
Sbjct: 644 LLSGPPGVGKTTTASLVCKEL-GYSY----VELNASDTRSKNSLKEVVAESLNNTSIKDF 698
Query: 101 AQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQS 160
+ GKH V+++DE D M + + + T+ + C + + I+S
Sbjct: 699 CSGTSSSVSGKH-VLIMDEVDGMAGNEDRGGIQELIGLIRHTKVPIICMCNDRNHPKIRS 757
Query: 161 R---CAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNL 213
C +RF R E+I +M + +E + P + II A+ D+RQ L+NL
Sbjct: 758 LVHYCFDLRFQRPRLEQIKGAMMSIAFKEGLKIPPPAMNEIILAANQDIRQVLHNL 813
Score = 47 (21.6 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 15 WVEKYRPTKVCDIVG 29
WV+KY+P + I+G
Sbjct: 584 WVDKYKPVSLKAIIG 598
>UNIPROTKB|E1C339 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524 GO:GO:0006260
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 OMA:GQINFPG EMBL:AADN02015876 EMBL:AADN02015877
EMBL:AADN02015878 EMBL:AADN02015879 EMBL:AADN02015880
IPI:IPI00683437 Ensembl:ENSGALT00000029582 ArrayExpress:E1C339
Uniprot:E1C339
Length = 1153
Score = 163 (62.4 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 55/176 (31%), Positives = 84/176 (47%)
Query: 50 ILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGI----DVV-----RNKIKMF 100
+L+GPPG GKTT+ + EL G +Y +ELNASD R +VV IK F
Sbjct: 648 LLSGPPGVGKTTTASLVCKEL-GYSY----VELNASDTRSKNSLKEVVAESLNNTSIKDF 702
Query: 101 AQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQS 160
+ GKH V+++DE D M + + + T+ + C + + I+S
Sbjct: 703 CSGTSSSVSGKH-VLIMDEVDGMAGNEDRGGIQELIGLIRHTKVPIICMCNDRNHPKIRS 761
Query: 161 R---CAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNL 213
C +RF R E+I +M + +E + P + II A+ D+RQ L+NL
Sbjct: 762 LVHYCFDLRFQRPRLEQIKGAMMSIAFKEGLKIPPPAMNEIILAANQDIRQVLHNL 817
Score = 47 (21.6 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 15 WVEKYRPTKVCDIVG 29
WV+KY+P + I+G
Sbjct: 588 WVDKYKPVSLKAIIG 602
>TIGR_CMR|CJE_1293 [details] [associations]
symbol:CJE_1293 "DNA polymerase III, gamma/tau subunits"
species:195099 "Campylobacter jejuni RM1221" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR012763
SMART:SM00382 GO:GO:0005524 GO:GO:0006260 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 TIGRFAMs:TIGR02397
RefSeq:YP_179281.1 ProteinModelPortal:Q5HTV4 STRING:Q5HTV4
GeneID:3231800 KEGG:cjr:CJE1293 PATRIC:20044382 OMA:EMMLFLK
ProtClustDB:PRK08451 BioCyc:CJEJ195099:GJC0-1319-MONOMER
Uniprot:Q5HTV4
Length = 509
Score = 159 (61.0 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 58/240 (24%), Positives = 110/240 (45%)
Query: 79 VMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY 138
++E++A+ +RG++ ++ I+ Q K T + K+ ++DE +T A AL +T+E
Sbjct: 89 IIEMDAASNRGLEDIQALIE---QTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEP 145
Query: 139 SNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAI 198
+ +F LA K+ + SR RF ++ EIL+ L ++ +E V + E L+ I
Sbjct: 146 PSYVKFILATTDPLKLPATVLSRTQHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFI 205
Query: 199 IFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQP---HPLHVKNMVRNVLEGKFDDA 255
+ +G +R L L + N+ ++ K D P +K + +L +
Sbjct: 206 ARSGNGSLRDTLTLLDQAIIFCQ--NEISISKTTDMLGFLDPEKIKAFYQAILTKDKEKV 263
Query: 256 CSGLKQLYDLGYSPTDIITT-LFRI-----IKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
+ L++L D Y + +I LF + K+ E + + F + A +CD G
Sbjct: 264 FAYLEELQD--YEASSVIDEMLFYLKESFFAKSTEFSTLIYERFFRILSKAKNMLCDDDG 321
>RGD|620619 [details] [associations]
symbol:Rfc1 "replication factor C (activator 1) 1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005663 "DNA replication factor C complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0019904 "protein domain specific
binding" evidence=IPI] [GO:0043234 "protein complex" evidence=IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 RGD:620619 GO:GO:0005524
GO:GO:0005737 GO:GO:0045893 GO:GO:0043234 GO:GO:0005730
GO:GO:0006260 GO:GO:0043565 GO:GO:0000122 GO:GO:0003690
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
HSSP:P26996 SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 CTD:5981
HOVERGEN:HBG004167 EMBL:AF030050 IPI:IPI00210191 RefSeq:NP_445999.1
UniGene:Rn.103272 ProteinModelPortal:Q9Z2R7 STRING:Q9Z2R7
GeneID:89809 KEGG:rno:89809 UCSC:RGD:620619 NextBio:617672
Genevestigator:Q9Z2R7 Uniprot:Q9Z2R7
Length = 1104
Score = 152 (58.6 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 54/195 (27%), Positives = 92/195 (47%)
Query: 35 ARLGIIAR--DGN-MPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGID 91
A+ G +A DG+ +L+GPPG GKTT+ + EL G +Y +ELNASD R +
Sbjct: 613 AKFGKVASKDDGSSFKAALLSGPPGVGKTTTASLVCQEL-GYSY----VELNASDTRSKN 667
Query: 92 VVR---------NKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA-LRRTMEIYSNS 141
++ IK F + +++DE D M + ++ + + +
Sbjct: 668 SLKAIVAESLNNTSIKGFYTSGASPSVSARHALIMDEVDGMAGNEDRGGIQELIGLIKH- 726
Query: 142 TRFALACNVSSKIIEPIQSR---CAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAI 198
T+ + C + + I+S C +RF R E+I S ++ + +E + P + I
Sbjct: 727 TKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNEI 786
Query: 199 IFTADGDMRQALNNL 213
I A+ D+RQ L+NL
Sbjct: 787 ILGANQDVRQVLHNL 801
Score = 55 (24.4 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 15 WVEKYRPTKVCDIVG 29
WV+KY+PT + +I+G
Sbjct: 570 WVDKYKPTSLKNIIG 584
>SGD|S000004683 [details] [associations]
symbol:CTF18 "Subunit of a Ctf18 RFC-like complex"
species:4932 "Saccharomyces cerevisiae" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0031390
"Ctf18 RFC-like complex" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007064 "mitotic sister chromatid cohesion"
evidence=IGI;IMP] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003674
"molecular_function" evidence=ND] [GO:0043596 "nuclear replication
fork" evidence=IDA] [GO:0035753 "maintenance of DNA trinucleotide
repeats" evidence=IMP] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
SGD:S000004683 GO:GO:0005739 GO:GO:0005524 GO:GO:0003677
EMBL:BK006946 GO:GO:0006270 GO:GO:0043596 GO:GO:0000724 EMBL:Z49259
GO:GO:0017111 eggNOG:COG0470 GO:GO:0007064 OMA:YNEGFSN KO:K11269
GeneTree:ENSGT00550000075029 OrthoDB:EOG4HDX3F GO:GO:0031390
EMBL:L24514 PIR:S50340 RefSeq:NP_013795.1 ProteinModelPortal:P49956
SMR:P49956 DIP:DIP-5868N IntAct:P49956 MINT:MINT-626774
STRING:P49956 PaxDb:P49956 EnsemblFungi:YMR078C GeneID:855102
KEGG:sce:YMR078C CYGD:YMR078c HOGENOM:HOG000066044 NextBio:978425
Genevestigator:P49956 GermOnline:YMR078C GO:GO:0035753
Uniprot:P49956
Length = 741
Score = 94 (38.1 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 149 NVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQ 208
N+ + +E ++ C I+ R SD +L RL ++ +E + + + +I A GD+R
Sbjct: 299 NLYAPSLEKLKPFCEIIAVKRPSDTTLLERLNLICHKENMNIPIKAINDLIDLAQGDVRN 358
Query: 209 ALNNLQ 214
+NNLQ
Sbjct: 359 CINNLQ 364
Score = 83 (34.3 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKI 97
L+L GPPG GKT+ +AH ++ +V E+NASD+R +V+ KI
Sbjct: 179 LLLHGPPGIGKTS----VAH-VIAKQSGFSVSEINASDERAGPMVKEKI 222
Score = 67 (28.6 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 12 DIPWVEKYRPTKVCDIVGN 30
D WVEK+RP K D+VGN
Sbjct: 113 DTLWVEKWRPKKFLDLVGN 131
>TAIR|locus:2012497 [details] [associations]
symbol:AT1G14460 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0009360 "DNA polymerase III complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 EMBL:CP002684
GO:GO:0005886 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 IPI:IPI00525486 RefSeq:NP_172898.2
UniGene:At.43554 UniGene:At.69297 ProteinModelPortal:F4HW65
SMR:F4HW65 PRIDE:F4HW65 EnsemblPlants:AT1G14460.1 GeneID:838008
KEGG:ath:AT1G14460 OMA:REVIAYK Uniprot:F4HW65
Length = 1116
Score = 138 (53.6 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 54/217 (24%), Positives = 101/217 (46%)
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG---KHKVVVLDEADSMTAG 126
+LG + R+ ++EL+A G + VR +K K +TL P ++KV V+DE + +
Sbjct: 502 MLGKS-RD-LLELDAGKKNGAEKVRYLLK----KLLTLAPQSSQRYKVFVIDECHLLPSR 555
Query: 127 AQQALRRTMEIYSNSTRFALACNVSS--KIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
+L + +E + +F C + + IQSRC F+++ D +I+ RL +
Sbjct: 556 TWLSLLKFLE--NPLQKFVFVCITTDLDNVPRTIQSRCQKYIFNKVRDGDIVVRLRKIAS 613
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNL-QATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
+E + + L+ I ADG +R A L Q + G R + + V ++ + +
Sbjct: 614 DENLDVESQALDLIALNADGSLRDAETMLEQLSLMGKR-ITVDLVNELVGVVSDDKLLEL 672
Query: 244 VRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRII 280
+ L + ++L DLG P +++ L +I
Sbjct: 673 LELALSSDTAETVKKARELLDLGADPILMMSQLASLI 709
Score = 66 (28.3 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 17 EKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLIL-AGPPGTGKTTSILALAHEL 70
+KY+P +++G V L + G + ++ L GP GTGKT++ L+ L
Sbjct: 426 QKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKTSTARILSAAL 480
>ZFIN|ZDB-GENE-070410-99 [details] [associations]
symbol:rfc1 "replication factor C (activator 1) 1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
ZFIN:ZDB-GENE-070410-99 GO:GO:0005524 GO:GO:0006260 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GeneTree:ENSGT00670000098003
GO:GO:0003689 SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 CTD:5981
EMBL:CR759875 EMBL:BX000461 IPI:IPI00851894 RefSeq:NP_001082960.2
UniGene:Dr.79216 Ensembl:ENSDART00000143948 GeneID:100037336
KEGG:dre:100037336 NextBio:20788508 ArrayExpress:F1Q5P6 Bgee:F1Q5P6
Uniprot:F1Q5P6
Length = 1147
Score = 151 (58.2 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 49/172 (28%), Positives = 79/172 (45%)
Query: 50 ILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVV-----RNKIKMFAQKK 104
+L+GPPG GKTT+ AL E LG +Y E S + +V+ IK F
Sbjct: 641 LLSGPPGVGKTTTA-ALVCEELGYSYVEMNASCTRSKNSLKEVIAESLNNTSIKNFYTGA 699
Query: 105 VTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSR--- 161
KH V+++DE D M + + M ++ + C + + + I+S
Sbjct: 700 SQTVSSKH-VLIMDEVDGMAGNEDRGGIQEMIGLIKQSKIPIICMCNDRNHQKIRSLANY 758
Query: 162 CAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNL 213
C +RF R E+I +M + +E + P L +I ++ D+RQ L+NL
Sbjct: 759 CYDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPALNEVILASNQDIRQVLHNL 810
Score = 50 (22.7 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 15 WVEKYRPTKVCDIVG 29
WV+KYRP + +++G
Sbjct: 578 WVDKYRPRSLKNLIG 592
>MGI|MGI:97891 [details] [associations]
symbol:Rfc1 "replication factor C (activator 1) 1"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005663 "DNA replication factor C
complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=ISO] [GO:0043234 "protein complex" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 MGI:MGI:97891 Pfam:PF00533 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0006260 GO:GO:0006351
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 eggNOG:COG5275 CTD:5981
HOVERGEN:HBG004167 OrthoDB:EOG4D26P3 ChiTaRS:RFC1 EMBL:U01222
EMBL:X72711 EMBL:U36441 EMBL:U07157 EMBL:U15037 IPI:IPI00378168
IPI:IPI00896013 PIR:A49393 RefSeq:NP_035388.2 UniGene:Mm.148877
ProteinModelPortal:P35601 SMR:P35601 STRING:P35601
PhosphoSite:P35601 PaxDb:P35601 PRIDE:P35601 GeneID:19687
KEGG:mmu:19687 UCSC:uc008xni.2 UCSC:uc008xnj.2 InParanoid:P35601
NextBio:297020 CleanEx:MM_RFC1 Genevestigator:P35601
GermOnline:ENSMUSG00000029191 Uniprot:P35601
Length = 1131
Score = 150 (57.9 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 54/195 (27%), Positives = 91/195 (46%)
Query: 35 ARLGIIAR--DGN-MPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGID 91
A+ G +A DG+ +L+GPPG GKTT+ + EL G +Y +ELNASD R +
Sbjct: 614 AKFGKLASKDDGSSFKAALLSGPPGVGKTTTASLVCQEL-GYSY----VELNASDTRSKN 668
Query: 92 VVR---------NKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA-LRRTMEIYSNS 141
++ IK F +++DE D M + ++ + + +
Sbjct: 669 SLKAVVAESLNNTSIKGFYTSGAAPSVSARHALIMDEVDGMAGNEDRGGIQELIGLIKH- 727
Query: 142 TRFALACNVSSKIIEPIQSR---CAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAI 198
T+ + C + + I+S C +RF R E+I S ++ + +E + P + I
Sbjct: 728 TKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNEI 787
Query: 199 IFTADGDMRQALNNL 213
I A+ D+RQ L+NL
Sbjct: 788 ILGANQDVRQVLHNL 802
Score = 50 (22.7 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 15 WVEKYRPTKVCDIVG 29
WV+KY+P + +I+G
Sbjct: 570 WVDKYKPASLKNIIG 584
>UNIPROTKB|P35251 [details] [associations]
symbol:RFC1 "Replication factor C subunit 1" species:9606
"Homo sapiens" [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0006261
"DNA-dependent DNA replication" evidence=TAS] [GO:0007004 "telomere
maintenance via telomerase" evidence=TAS] [GO:0008047 "enzyme
activator activity" evidence=TAS] [GO:0000084 "S phase of mitotic
cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
evidence=TAS] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0043085 "positive regulation of
catalytic activity" evidence=TAS] Reactome:REACT_216
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 Reactome:REACT_115566 GO:GO:0005654 GO:GO:0006355
GO:GO:0006351 GO:GO:0008047 GO:GO:0000084 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 EMBL:CH471069 GO:GO:0007004
GO:GO:0000722 Pathway_Interaction_DB:faspathway Reactome:REACT_383
GO:GO:0006283 GO:GO:0003689 GO:GO:0006271 GO:GO:0032201
GO:GO:0006297 SUPFAM:SSF48019 GO:GO:0005663 KO:K10754
eggNOG:COG5275 EMBL:L23320 EMBL:Z22642 EMBL:AF040250 EMBL:AY600371
EMBL:AK291612 EMBL:BC035297 EMBL:BC051751 EMBL:BC051786
IPI:IPI00375358 IPI:IPI00375359 PIR:A49651 PIR:JN0599
RefSeq:NP_001191676.1 RefSeq:NP_002904.3 UniGene:Hs.507475 PDB:2EBU
PDB:2K6G PDB:2K7F PDBsum:2EBU PDBsum:2K6G PDBsum:2K7F
ProteinModelPortal:P35251 SMR:P35251 IntAct:P35251 STRING:P35251
PhosphoSite:P35251 DMDM:56757608 PaxDb:P35251 PRIDE:P35251
DNASU:5981 Ensembl:ENST00000349703 Ensembl:ENST00000381897
GeneID:5981 KEGG:hsa:5981 UCSC:uc003gtx.2 UCSC:uc003gty.2 CTD:5981
GeneCards:GC04M039291 HGNC:HGNC:9969 HPA:CAB009520 MIM:102579
neXtProt:NX_P35251 PharmGKB:PA34338 HOGENOM:HOG000013116
HOVERGEN:HBG004167 InParanoid:P35251 OMA:GQINFPG OrthoDB:EOG4D26P3
ChiTaRS:RFC1 EvolutionaryTrace:P35251 GenomeRNAi:5981 NextBio:23281
PMAP-CutDB:P35251 ArrayExpress:P35251 Bgee:P35251 CleanEx:HS_RFC1
Genevestigator:P35251 GermOnline:ENSG00000035928 Uniprot:P35251
Length = 1148
Score = 147 (56.8 bits), Expect = 9.7e-08, Sum P(2) = 9.7e-08
Identities = 50/177 (28%), Positives = 82/177 (46%)
Query: 50 ILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRG--------IDVVRN-KIKMF 100
+L+GPPG GKTT+ + EL G +Y +ELNASD R + + N IK F
Sbjct: 648 LLSGPPGVGKTTTASLVCQEL-GYSY----VELNASDTRSKSSLKAIVAESLNNTSIKGF 702
Query: 101 AQKKVTLPPGKHKVVVLDEADSMTAGAQQA-LRRTMEIYSNSTRFALACNVSSKIIEPIQ 159
+++DE D M + ++ + + + T+ + C + + I+
Sbjct: 703 YSNGAASSVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKH-TKIPIICMCNDRNHPKIR 761
Query: 160 SR---CAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNL 213
S C +RF R E+I +M + +E + P + II A+ D+RQ L+NL
Sbjct: 762 SLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNL 818
Score = 53 (23.7 bits), Expect = 9.7e-08, Sum P(2) = 9.7e-08
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 15 WVEKYRPTKVCDIVG 29
WV+KY+PT + I+G
Sbjct: 586 WVDKYKPTSLKTIIG 600
>TAIR|locus:504956441 [details] [associations]
symbol:RFC1 "replication factor C1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003689
"DNA clamp loader activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0031935
"regulation of chromatin silencing" evidence=IMP] [GO:0051570
"regulation of histone H3-K9 methylation" evidence=IMP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0007126
"meiosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR010372 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF06144 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0009737 GO:GO:0007126 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006260 GO:GO:0006974 GO:GO:0051570
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
GO:GO:0003887 EMBL:AL589883 HSSP:P26996 GO:GO:0009360
SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 eggNOG:COG5275 OMA:KLRMDER
GO:GO:0031935 EMBL:BT014965 IPI:IPI00543426 RefSeq:NP_680188.1
UniGene:At.45635 ProteinModelPortal:Q9C587 SMR:Q9C587 STRING:Q9C587
PaxDb:Q9C587 PRIDE:Q9C587 EnsemblPlants:AT5G22010.1 GeneID:832261
KEGG:ath:AT5G22010 TAIR:At5g22010 HOGENOM:HOG000085054
InParanoid:Q9C587 PhylomeDB:Q9C587 ProtClustDB:CLSN2690182
Genevestigator:Q9C587 Uniprot:Q9C587
Length = 956
Score = 129 (50.5 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 46/184 (25%), Positives = 87/184 (47%)
Query: 44 GNMPNLILAGPPGTGKTTSILALAHELLG-----PNYREAVMELNASDDRGIDVVR-NKI 97
G+ ++L+G PG GKTTS L ++LG N ++ + N++ +GI N +
Sbjct: 391 GSKKAVLLSGTPGIGKTTSA-KLVSQMLGFQAVEVNASDSRGKANSNIAKGIGGSNANSV 449
Query: 98 KMFAQKKV---TLPPGKHK--VVVLDEADSMTAGAQQALRRTM-EIYSNSTRFALACNVS 151
K + KH V+++DE D M+AG + + + I + CN
Sbjct: 450 KELVNNEAMAANFDRSKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDR 509
Query: 152 -SKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQAL 210
S+ ++ + + C + + + + +++ RLM + + E + LE + +GD+R A+
Sbjct: 510 YSQKLKSLVNYCLPLNYRKPTKQQMAKRLMHIAKAEGLEINEIALEELAERVNGDIRLAV 569
Query: 211 NNLQ 214
N LQ
Sbjct: 570 NQLQ 573
Score = 69 (29.3 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARL 37
+PW EKYRP +IVGN V +L
Sbjct: 340 LPWTEKYRPKVPNEIVGNQSLVTQL 364
>TIGR_CMR|GSU_0094 [details] [associations]
symbol:GSU_0094 "DNA polymerase III, gamma and tau
subunits" species:243231 "Geobacter sulfurreducens PCA" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 PRINTS:PR00300 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 HOGENOM:HOG000083933
KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HSSP:P28631
RefSeq:NP_951156.1 ProteinModelPortal:Q74GZ9 GeneID:2688299
KEGG:gsu:GSU0094 PATRIC:22022936 OMA:ELIDHFR ProtClustDB:PRK14965
BioCyc:GSUL243231:GH27-55-MONOMER Uniprot:Q74GZ9
Length = 579
Score = 147 (56.8 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 61/214 (28%), Positives = 93/214 (43%)
Query: 18 KYRPTKVCDIVGNLDAVARLGIIARD-GNMPNLIL-AGPPGTGKTTSILALAHEL----- 70
K+RP D+ G + V+R A D G + + L G G GKT+S LA L
Sbjct: 9 KWRPQTFSDLTGQ-EHVSRTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALNCEQG 67
Query: 71 LGP---NYREAVMELNAS---DDRGIDVVRNK----IKMFAQKKVTLPPG-KHKVVVLDE 119
+ P N A E+ A D ID N I+ + LP ++K+ ++DE
Sbjct: 68 MSPEPCNVCPACTEITAGTSVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDE 127
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
++ A AL +T+E +F A K+ I SRC F R+ ++++RL
Sbjct: 128 VHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKLPITILSRCQRFDFRRIPLAKVVARL 187
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNL 213
+V E + E L + DG MR +L+ L
Sbjct: 188 RYIVDREGISISDESLAVVARKGDGSMRDSLSVL 221
Score = 136 (52.9 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 40/154 (25%), Positives = 73/154 (47%)
Query: 79 VMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQALRRTME 136
V+E++ + + G+D +R ++ V P + +K+ ++DE ++ A AL +T+E
Sbjct: 90 VLEIDGASNTGVDDIRE-----LRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLE 144
Query: 137 IYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLE 196
+F A K+ I SRC F R+ ++++RL +V E + E L
Sbjct: 145 EPPPHVKFIFATTEPHKLPITILSRCQRFDFRRIPLAKVVARLRYIVDREGISISDESLA 204
Query: 197 AIIFTADGDMRQALNNLQAT--YSGFRFVNQENV 228
+ DG MR +L+ L + G VN ++V
Sbjct: 205 VVARKGDGSMRDSLSVLDQVLAFCG-ETVNDDDV 237
>UNIPROTKB|F1S4I7 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524 GO:GO:0005634
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 OMA:GQINFPG EMBL:FP089679 Ensembl:ENSSSCT00000009614
Uniprot:F1S4I7
Length = 1146
Score = 147 (56.8 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 49/177 (27%), Positives = 84/177 (47%)
Query: 50 ILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGI----DVVRNKIKMFAQKKV 105
+L+GPPG GKTT+ + EL G +Y +ELNASD R +++ + + K
Sbjct: 647 LLSGPPGVGKTTTASLVCQEL-GYSY----VELNASDTRSKNSLKEIIAESLNNTSIKGF 701
Query: 106 TLPPGKHKV-----VVLDEADSMTAGAQQA-LRRTMEIYSNSTRFALACNVSSKIIEPIQ 159
H V +++DE D M + ++ + + + T+ + C + + I+
Sbjct: 702 YSSGAAHSVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKH-TKIPIICMCNDRNHPKIR 760
Query: 160 SR---CAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNL 213
S C +RF R E+I +M + +E + P + II A+ D+RQ L+NL
Sbjct: 761 SLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNL 817
Score = 48 (22.0 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 15 WVEKYRPTKVCDIVG 29
WV+KY+P + I+G
Sbjct: 585 WVDKYKPASLKTIIG 599
>TIGR_CMR|CHY_2201 [details] [associations]
symbol:CHY_2201 "ATPase, AAA family" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0019538 "protein metabolic process"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0017111 eggNOG:COG2256 KO:K07478 ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 OMA:FEVIAPL RefSeq:YP_361014.1
ProteinModelPortal:Q3AA20 STRING:Q3AA20 GeneID:3726481
KEGG:chy:CHY_2201 PATRIC:21277469 HOGENOM:HOG000017624
BioCyc:CHYD246194:GJCN-2200-MONOMER Uniprot:Q3AA20
Length = 444
Score = 144 (55.7 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 57/213 (26%), Positives = 92/213 (43%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIAR---DGNMPNLILAGPPGTGKTTSILALAH 68
+ P + RP + + +G + ++ R + +LI GPPGTGKTT LA
Sbjct: 14 EAPLAYRMRPRSLDEFIGQEHILGEGKLLRRAILSDRLGSLIFYGPPGTGKTT--LA--- 68
Query: 69 ELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQ 128
++ + +NA G+ +R IK +++ G+ V+ +DE Q
Sbjct: 69 RIIASTTKSGFESINAVTS-GVGEIREVIKKAKEREKYY--GERTVLFIDEIHRFNKAQQ 125
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDE---EILSRLMVVVQ- 184
AL +E + A N ++ P+ SR I F L E EI+ R +V +
Sbjct: 126 DALLPEVEAGTIVLIGATTENPYFEVNAPLLSRSRIFEFKPLEPEHIREIVRRALVDKER 185
Query: 185 ---EEKVPYVPEGLEAIIFTADGDMRQALNNLQ 214
E KV E L+ ++ A GD R ALN ++
Sbjct: 186 GLGEYKVEISEEALDHLVTMAAGDARAALNGIE 218
>ZFIN|ZDB-GENE-050522-508 [details] [associations]
symbol:chtf18 "CTF18, chromosome transmission
fidelity factor 18 homolog (S. cerevisiae)" species:7955 "Danio
rerio" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
ZFIN:ZDB-GENE-050522-508 GO:GO:0005524 GO:GO:0017111 CTD:63922
KO:K11269 GeneTree:ENSGT00550000075029 OMA:TMLAYNL EMBL:BX323038
EMBL:BX004779 IPI:IPI00810052 RefSeq:NP_001103572.2
UniGene:Dr.83128 ProteinModelPortal:F1QF60
Ensembl:ENSDART00000092058 GeneID:554366 KEGG:dre:554366
NextBio:20880755 ArrayExpress:F1QF60 Bgee:F1QF60 Uniprot:F1QF60
Length = 957
Score = 121 (47.7 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 32/87 (36%), Positives = 47/87 (54%)
Query: 50 ILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPP 109
+L+GPPG GKTT LAH ++ + V+E+NASDDR ++ + +I Q K L
Sbjct: 370 LLSGPPGLGKTT----LAH-IIAKHAGYNVVEINASDDRSAELFQKRIDTATQMKSVLGA 424
Query: 110 G-KHKVVVLDEADSMTAGAQQALRRTM 135
K +++DE D A A L T+
Sbjct: 425 NEKPNCLIIDEIDGAPAAAINILLATL 451
Score = 72 (30.4 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 26/118 (22%), Positives = 52/118 (44%)
Query: 118 DEADSMTAGAQQALRRTMEIYSNSTRFALA-CN-VSSKIIEPIQSRCAIVRFSRLSDEEI 175
D D G AL++ + S R + CN + + P++ + ++ F + +
Sbjct: 455 DSKDGEETGVN-ALKKKKKKQSVLLRPIICICNDLYVPALRPLRQQAFLLVFPQTLPSRL 513
Query: 176 LSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS-GFRFVNQENVFKVC 232
RL + + + + L A+ D D+R +N LQ +S G + ++Q +V +C
Sbjct: 514 AQRLAEISRRQGMKADTGTLMALCEKTDNDIRSCINTLQFLHSRGQKHLDQRSVSSMC 571
>POMBASE|SPBC23E6.07c [details] [associations]
symbol:rfc1 "DNA replication factor C complex subunit
Rfc1" species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IGI] [GO:0006272 "leading strand elongation" evidence=ISO]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0003689 "DNA clamp loader activity" evidence=IC]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357
PomBase:SPBC23E6.07c Pfam:PF00533 GO:GO:0005524 GO:GO:0005730
GO:GO:0051301 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0007049
GO:GO:0000790 GO:GO:0043596 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0003689 GO:GO:0031390 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389 KO:K10754
eggNOG:COG5275 EMBL:AB027931 PIR:T39941 RefSeq:NP_596607.1
ProteinModelPortal:O60182 IntAct:O60182 STRING:O60182
EnsemblFungi:SPBC23E6.07c.1 GeneID:2540426 KEGG:spo:SPBC23E6.07c
HOGENOM:HOG000164552 OMA:KLRMDER OrthoDB:EOG4WDHM8 NextBio:20801553
Uniprot:O60182
Length = 934
Score = 146 (56.5 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 51/182 (28%), Positives = 88/182 (48%)
Query: 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR----------GIDVVRNKIK 98
++L+GPPG GKTT+ +A +L G + V+ELNASD R G+ ++
Sbjct: 412 VLLSGPPGIGKTTAAHLVA-KLEGYD----VLELNASDTRSKRLLDEQLFGVTDSQSLAG 466
Query: 99 MFAQKKVTLPPGKHKVV-VLDEADSMTAGAQQALRR-TMEIYSNSTRFALACNVSSKI-I 155
F K + K ++V ++DE D M++G + + + M I + CN + +
Sbjct: 467 YFGTKANPVDMAKSRLVLIMDEIDGMSSGDRGGVGQLNMIIKKSMIPIICICNDRAHPKL 526
Query: 156 EPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQA 215
P+ +RF R + SR+M + E + P+ ++ ++ DMRQ +N L +
Sbjct: 527 RPLDRTTFDLRFRRPDANSMRSRIMSIAYREGLKLSPQAVDQLVQGTQSDMRQIIN-LLS 585
Query: 216 TY 217
TY
Sbjct: 586 TY 587
>TIGR_CMR|SO_2013 [details] [associations]
symbol:SO_2013 "DNA polymerase III, gamma and tau subunits"
species:211586 "Shewanella oneidensis MR-1" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HOGENOM:HOG000083934 HSSP:P06710 RefSeq:NP_717619.1
ProteinModelPortal:Q8EFG0 SMR:Q8EFG0 GeneID:1169765
KEGG:son:SO_2013 PATRIC:23523647 OMA:PKSGLEM ProtClustDB:PRK14949
Uniprot:Q8EFG0
Length = 1002
Score = 146 (56.5 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 47/213 (22%), Positives = 100/213 (46%)
Query: 79 VMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY 138
++E++A+ +D R + Q + T G+ KV ++DE ++ + AL +T+E
Sbjct: 90 LIEVDAASRTKVDDTRELLDN-VQYRPTR--GRFKVYLIDEVHMLSRSSFNALLKTLEEP 146
Query: 139 SNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAI 198
+F LA K+ + SRC L+ +EI ++L ++ +E++P+ E L +
Sbjct: 147 PEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQQEIGTQLQHILTQEQLPFEHEALGLL 206
Query: 199 IFTADGDMRQALNNLQATYS---GFRFVNQ-ENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
+A+G MR AL+ + G +NQ +++ D+ H L + + + G
Sbjct: 207 AKSANGSMRDALSLTDQAIAFGGGTVMLNQVQSMLGSIDEQHVLGLLKALTDADIGALMQ 266
Query: 255 ACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAE 287
+C+ Q+ G +++ +L ++ + +
Sbjct: 267 SCA---QVLAYGADAQEVLRSLLELLHQITLTQ 296
>TIGR_CMR|SPO_0515 [details] [associations]
symbol:SPO_0515 "ATPase, AAA family" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008824 Pfam:PF05496 SMART:SM00382
GO:GO:0000166 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006281
GO:GO:0006310 GO:GO:0009378 HOGENOM:HOG000017623 KO:K07478
OMA:HDEPDAF ProtClustDB:PRK13342 InterPro:IPR021886 Pfam:PF12002
RefSeq:YP_165777.1 ProteinModelPortal:Q5LW28 GeneID:3194720
KEGG:sil:SPO0515 PATRIC:23374293 Uniprot:Q5LW28
Length = 438
Score = 141 (54.7 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 54/207 (26%), Positives = 95/207 (45%)
Query: 14 PWVEKYRPTKVCDIVGN---LDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
P ++ RP + +++G L A LG++ G++ +L+ GPPG GKTT LA E
Sbjct: 20 PLADRLRPQSLGEVIGQQQVLGPEAPLGVMLASGSLSSLVFWGPPGVGKTTIARLLAQET 79
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
++ ++++A G+ ++ K+F ++ G+ ++ +DE Q
Sbjct: 80 -DLHF----VQISAIFT-GVPDLK---KVFEAARIRRGNGQGTLLFVDEIHRFNKAQQDG 130
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE---K 187
ME + A N S ++ + SR ++ RLS E+ L L + E +
Sbjct: 131 FLPHMEDGTILLVGATTENPSFELNAALLSRAQVLVLERLSAED-LEHLTARAERELDRE 189
Query: 188 VPYVPEGLEAIIFTADGDMRQALNNLQ 214
+P PE A+ ADGD R LN ++
Sbjct: 190 LPLTPEARLALQEMADGDGRALLNLIE 216
>TAIR|locus:2065299 [details] [associations]
symbol:STI "STICHEL" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0009360 "DNA
polymerase III complex" evidence=IEA] [GO:0010026 "trichome
differentiation" evidence=IMP] [GO:0010091 "trichome branching"
evidence=IMP] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0000278 "mitotic cell cycle" evidence=RCA] [GO:0003002
"regionalization" evidence=RCA] [GO:0007155 "cell adhesion"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0009888 "tissue development" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010090 "trichome
morphogenesis" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010638 "positive regulation of organelle organization"
evidence=RCA] [GO:0016049 "cell growth" evidence=RCA] [GO:0016926
"protein desumoylation" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0045595 "regulation of cell
differentiation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048589 "developmental growth" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 GO:GO:0005886 GO:GO:0005524 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0010091
EMBL:AC004136 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 EMBL:AF264023 IPI:IPI00542444
PIR:T00615 RefSeq:NP_565285.1 UniGene:At.19529 HSSP:P06710
ProteinModelPortal:O64728 SMR:O64728 STRING:O64728 PaxDb:O64728
PRIDE:O64728 EnsemblPlants:AT2G02480.1 GeneID:814777
KEGG:ath:AT2G02480 TAIR:At2g02480 HOGENOM:HOG000244020
InParanoid:O64728 OMA:CHSKTLR PhylomeDB:O64728
ProtClustDB:CLSN2687935 ArrayExpress:O64728 Genevestigator:O64728
Uniprot:O64728
Length = 1218
Score = 127 (49.8 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 51/206 (24%), Positives = 84/206 (40%)
Query: 81 ELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQALRRTMEIY 138
EL+ ++ +G D VR +K LP +KV V+DE + + + + +E
Sbjct: 537 ELDGANKKGADKVRYLLKNLP---TILPRNSSMYKVFVIDECHLLPSKTWLSFLKFLENP 593
Query: 139 SNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAI 198
F + IQSRC F +L D +I+ RL + +E + L+ I
Sbjct: 594 LQKVVFIFITTDLENVPRTIQSRCQKFLFDKLKDSDIVVRLKKIASDENLDVDLHALDLI 653
Query: 199 IFTADGDMRQALNNL-QATYSGFRFVN---QENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
ADG +R A L Q + G R E V V D+ + ++ L +
Sbjct: 654 AMNADGSLRDAETMLEQLSLLGKRITTALVNELVGVVSDEK----LLELLELALSSDTAE 709
Query: 255 ACSGLKQLYDLGYSPTDIITTLFRII 280
++L DLG P +++ L +I
Sbjct: 710 TVKRARELLDLGADPIVLMSQLASLI 735
Score = 66 (28.3 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 17 EKYRPTKVCDIVGNLDAVARL-GIIARDGNMPNLILAGPPGTGKTTS 62
+KYRP +++G V L + R P + GP GTGKT++
Sbjct: 453 QKYRPMFFEELIGQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTST 499
Score = 38 (18.4 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 44 GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD 87
G +P L+ G G G ++ L+ + L NY E +E + D
Sbjct: 374 GVLP-LLSYGGDGRGGSSLGTGLSDDELSTNYGELDLEAQSRLD 416
>ASPGD|ASPL0000007447 [details] [associations]
symbol:uvsF species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IMP] [GO:0005663 "DNA replication
factor C complex" evidence=ISA] [GO:0006260 "DNA replication"
evidence=ISA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031391 "Elg1
RFC-like complex" evidence=IEA] [GO:0003689 "DNA clamp loader
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0006260 EMBL:AACD01000107 EMBL:BN001301
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 HOGENOM:HOG000164552
OrthoDB:EOG4WDHM8 RefSeq:XP_663907.1 ProteinModelPortal:Q5AZH7
STRING:Q5AZH7 EnsemblFungi:CADANIAT00006686 GeneID:2871090
KEGG:ani:AN6303.2 OMA:PKMKPFD Uniprot:Q5AZH7
Length = 1092
Score = 143 (55.4 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 53/190 (27%), Positives = 93/190 (48%)
Query: 42 RDGN--MPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIK- 98
+DG+ ++++ GPPG GKTT+ +A +L G + V+E NASD R +V + +
Sbjct: 513 KDGSGLYRSVMIHGPPGIGKTTAAHLVA-KLEGYD----VVESNASDTRSKKLVESGLLG 567
Query: 99 ---------MFAQKKVTLPPGKHKVV-VLDEADSMTAGAQQALRRTMEIYSNSTRFALA- 147
F+ + GK +V ++DE D M+AG + + M + T+ L
Sbjct: 568 VLDTTSLQGYFSTSNKKVESGKKNLVLIMDEVDGMSAGDRGGVG-AMAAIAKKTQIPLIL 626
Query: 148 -CNVSS-KIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGD 205
CN ++P + F R + E++ +RL+ + EK+ P+ L+++I D
Sbjct: 627 ICNERRLPKMKPFDHVTFEIPFRRPTVEQVRARLLTICFREKMKIPPQVLDSLIEGTHAD 686
Query: 206 MRQALNNLQA 215
+RQ +N L A
Sbjct: 687 IRQVINMLSA 696
>UNIPROTKB|Q9KSZ8 [details] [associations]
symbol:VC_1108 "Putative uncharacterized protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0017111 KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 HSSP:Q56313 PIR:G82241
RefSeq:NP_230753.1 ProteinModelPortal:Q9KSZ8 SMR:Q9KSZ8
DNASU:2614378 GeneID:2614378 KEGG:vch:VC1108 PATRIC:20081310
Uniprot:Q9KSZ8
Length = 449
Score = 138 (53.6 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 56/214 (26%), Positives = 94/214 (43%)
Query: 14 PWVEKYRPTKVCDIVGN---LDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
P + RP V +G L L G++ ++IL GPPGTGKTT LA
Sbjct: 16 PLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTT----LAE-- 69
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ NY A +E ++ G+ +R I+ + K++ G+ ++ +DE Q A
Sbjct: 70 VAANYANAEVERVSAVTSGVKEIRAAIEKARENKLS---GRRTILFVDEVHRFNKSQQDA 126
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL-MVVVQEE--- 186
+E + + A N S ++ + SR + + + L+ +EIL L + E
Sbjct: 127 FLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLNQQEILQALHQAIADTERGL 186
Query: 187 -KVP--YVPEGLEAIIFTADGDMRQALNNLQATY 217
KV + L+ + +GD R +LN L+ Y
Sbjct: 187 GKVAAVFADNVLDRLAELVNGDARMSLNYLELLY 220
>TIGR_CMR|VC_1108 [details] [associations]
symbol:VC_1108 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0017111 KO:K07478
OMA:HDEPDAF ProtClustDB:PRK13342 InterPro:IPR021886 Pfam:PF12002
HSSP:Q56313 PIR:G82241 RefSeq:NP_230753.1 ProteinModelPortal:Q9KSZ8
SMR:Q9KSZ8 DNASU:2614378 GeneID:2614378 KEGG:vch:VC1108
PATRIC:20081310 Uniprot:Q9KSZ8
Length = 449
Score = 138 (53.6 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 56/214 (26%), Positives = 94/214 (43%)
Query: 14 PWVEKYRPTKVCDIVGN---LDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
P + RP V +G L L G++ ++IL GPPGTGKTT LA
Sbjct: 16 PLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTT----LAE-- 69
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ NY A +E ++ G+ +R I+ + K++ G+ ++ +DE Q A
Sbjct: 70 VAANYANAEVERVSAVTSGVKEIRAAIEKARENKLS---GRRTILFVDEVHRFNKSQQDA 126
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL-MVVVQEE--- 186
+E + + A N S ++ + SR + + + L+ +EIL L + E
Sbjct: 127 FLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLNQQEILQALHQAIADTERGL 186
Query: 187 -KVP--YVPEGLEAIIFTADGDMRQALNNLQATY 217
KV + L+ + +GD R +LN L+ Y
Sbjct: 187 GKVAAVFADNVLDRLAELVNGDARMSLNYLELLY 220
>UNIPROTKB|Q9KT51 [details] [associations]
symbol:VC_1054 "DNA polymerase III, subunits gamma and tau"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397 OMA:VQLYYQT
ProtClustDB:PRK07994 InterPro:IPR022001 Pfam:PF12168 HSSP:P06710
PIR:H82246 RefSeq:NP_230699.1 ProteinModelPortal:Q9KT51 SMR:Q9KT51
DNASU:2614324 GeneID:2614324 KEGG:vch:VC1054 PATRIC:20081206
Uniprot:Q9KT51
Length = 692
Score = 124 (48.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 43/166 (25%), Positives = 73/166 (43%)
Query: 79 VMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY 138
++E++A+ ++ R + K G+ KV ++DE ++ + AL +T+E
Sbjct: 90 LLEIDAASRTKVEDTRELLDNVQYKPAR---GRFKVYLIDEVHMLSRHSFNALLKTLEEP 146
Query: 139 SNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAI 198
+F LA K+ I SRC +S E I +L V+ E++ + L +
Sbjct: 147 PEYVKFLLATTDPQKLPVTILSRCLQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLL 206
Query: 199 IFTADGDMRQALNNL-QATYSGFRFVNQE---NVFKVCDQPHPLHV 240
ADG MR AL+ QA G V + ++ D H LH+
Sbjct: 207 AHAADGSMRDALSLTDQAIALGNGVVKSDIVAHMLGTLDTDHSLHL 252
Score = 59 (25.8 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 18 KYRPTKVCDIVGNLDAVARL-GIIARDGNMPNLILAGPPGTGKTT 61
K+RPT+ ++VG + L +A++ + +G G GKTT
Sbjct: 9 KWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTT 53
>TIGR_CMR|VC_1054 [details] [associations]
symbol:VC_1054 "DNA polymerase III, subunits gamma and tau"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 OMA:VQLYYQT ProtClustDB:PRK07994
InterPro:IPR022001 Pfam:PF12168 HSSP:P06710 PIR:H82246
RefSeq:NP_230699.1 ProteinModelPortal:Q9KT51 SMR:Q9KT51
DNASU:2614324 GeneID:2614324 KEGG:vch:VC1054 PATRIC:20081206
Uniprot:Q9KT51
Length = 692
Score = 124 (48.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 43/166 (25%), Positives = 73/166 (43%)
Query: 79 VMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY 138
++E++A+ ++ R + K G+ KV ++DE ++ + AL +T+E
Sbjct: 90 LLEIDAASRTKVEDTRELLDNVQYKPAR---GRFKVYLIDEVHMLSRHSFNALLKTLEEP 146
Query: 139 SNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAI 198
+F LA K+ I SRC +S E I +L V+ E++ + L +
Sbjct: 147 PEYVKFLLATTDPQKLPVTILSRCLQFHLKPISVENIQQQLDKVLHAEQISSDSKALNLL 206
Query: 199 IFTADGDMRQALNNL-QATYSGFRFVNQE---NVFKVCDQPHPLHV 240
ADG MR AL+ QA G V + ++ D H LH+
Sbjct: 207 AHAADGSMRDALSLTDQAIALGNGVVKSDIVAHMLGTLDTDHSLHL 252
Score = 59 (25.8 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 18 KYRPTKVCDIVGNLDAVARL-GIIARDGNMPNLILAGPPGTGKTT 61
K+RPT+ ++VG + L +A++ + +G G GKTT
Sbjct: 9 KWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTT 53
>TIGR_CMR|APH_1348 [details] [associations]
symbol:APH_1348 "DNA polymerase III, subunits gamma and
tau" species:212042 "Anaplasma phagocytophilum HZ" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 OMA:TCARIVS ProtClustDB:PRK14964
RefSeq:YP_505851.1 ProteinModelPortal:Q2GIF0 STRING:Q2GIF0
GeneID:3930792 KEGG:aph:APH_1348 PATRIC:20951496
BioCyc:APHA212042:GHPM-1348-MONOMER Uniprot:Q2GIF0
Length = 456
Score = 136 (52.9 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 51/239 (21%), Positives = 108/239 (45%)
Query: 45 NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKK 104
N N + P GT T + + +H P+ V+E++A+ + +D +R + +
Sbjct: 60 NCENGPTSSPCGTCATCTSIKNSHN---PD----VVEMDAASNTSVDDIR----VILESS 108
Query: 105 VTLP-PGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCA 163
LP + KV ++DE ++ A AL +T+E + +F +A K+ + SRC
Sbjct: 109 NYLPVSSRFKVYIIDEVHMLSTSAFNALLKTLESPAQHAKFIMATTEVRKVPVTVASRCL 168
Query: 164 IVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFR 221
+ +L +++ L+ + +E + + L I + G +R +L L+ YS +
Sbjct: 169 RLDLGKLPIKQLYDHLVKISAKENIAHDESSLMLIAENSSGSVRNSLFLLEQALIYSNNK 228
Query: 222 FVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRII 280
QE V ++ ++ +VR+++ A G ++L + +P I + +++
Sbjct: 229 ISLQE-VRELLGCVDKKILEGIVRDIISSDVKSAIDGFRELCNAS-TPVIIFEGMQKVV 285
Score = 132 (51.5 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 51/211 (24%), Positives = 91/211 (43%)
Query: 18 KYRPTKVCDIVGN--LDAVARLGIIARDGNMPNLILAGPPGTGKTTS--ILALAHELL-G 72
KYRP+ D+VG L + R + N P L++ G G GKTT I++L G
Sbjct: 6 KYRPSNFDDLVGQDVLVRILRNSFSVGNLNTP-LLMVGASGVGKTTCARIVSLCLNCENG 64
Query: 73 PNYRE--------AVMELNASDDRGIDVVRNK----IKMFAQKKVTLP-PGKHKVVVLDE 119
P ++ + D +D N I++ + LP + KV ++DE
Sbjct: 65 PTSSPCGTCATCTSIKNSHNPDVVEMDAASNTSVDDIRVILESSNYLPVSSRFKVYIIDE 124
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
++ A AL +T+E + +F +A K+ + SRC + +L +++ L
Sbjct: 125 VHMLSTSAFNALLKTLESPAQHAKFIMATTEVRKVPVTVASRCLRLDLGKLPIKQLYDHL 184
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQAL 210
+ + +E + + L I + G +R +L
Sbjct: 185 VKISAKENIAHDESSLMLIAENSSGSVRNSL 215
>RGD|628836 [details] [associations]
symbol:Wrnip1 "Werner helicase interacting protein 1"
species:10116 "Rattus norvegicus" [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=ISO;ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030174 "regulation of DNA-dependent DNA
replication initiation" evidence=ISO;ISS] [GO:0042802 "identical
protein binding" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR006642
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 SMART:SM00734 RGD:628836
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0016887
GO:GO:0000731 GO:GO:0030174 eggNOG:COG2256 HOGENOM:HOG000017623
KO:K07478 InterPro:IPR021886 Pfam:PF12002 CTD:56897
HOVERGEN:HBG062192 OMA:PGHWDAD OrthoDB:EOG457568
GeneTree:ENSGT00390000008538 EMBL:AY136827 EMBL:BC098652
IPI:IPI00191457 RefSeq:NP_758835.1 UniGene:Rn.8783
ProteinModelPortal:Q8CG07 STRING:Q8CG07 PhosphoSite:Q8CG07
PRIDE:Q8CG07 Ensembl:ENSRNOT00000023332 GeneID:282835
KEGG:rno:282835 UCSC:RGD:628836 InParanoid:Q8CG07 NextBio:624901
ArrayExpress:Q8CG07 Genevestigator:Q8CG07
GermOnline:ENSRNOG00000017040 Uniprot:Q8CG07
Length = 660
Score = 131 (51.2 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 48/173 (27%), Positives = 82/173 (47%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVAR---LGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
P +K RP + D +G AV + L + +P+LIL GPPG GKTT LAH +
Sbjct: 221 PLADKMRPDTLQDYIGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTT----LAHII 276
Query: 71 LGPNYREAV--MELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVV-LDEADSMTAGA 127
+ + ++ + L+A++ + DV R+ IK +K K K ++ +DE
Sbjct: 277 ANNSKKHSIRFVTLSATNAKTNDV-RDVIKQAQNEKSFF---KRKTILFIDEIHRFNKSQ 332
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
Q +E + + A N S ++ + SRC ++ +L E +++ LM
Sbjct: 333 QDTFLPHVECGTITLIGATTENPSFQVNTALLSRCRVIVLEKLPVEAMVTILM 385
Score = 49 (22.3 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPH-PLHVKNMVRNVLEG 250
+ ++ + + +DGD R LN LQ R +++ K Q + P V +V EG
Sbjct: 422 KAVDTLAYLSDGDARTGLNGLQLAVLA-RLSSRKMFCKKSGQTYSPSRVLITENDVKEG 479
>UNIPROTKB|Q8CG07 [details] [associations]
symbol:Wrnip1 "ATPase WRNIP1" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR006642 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
SMART:SM00734 RGD:628836 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0016887 GO:GO:0000731 GO:GO:0030174 eggNOG:COG2256
HOGENOM:HOG000017623 KO:K07478 InterPro:IPR021886 Pfam:PF12002
CTD:56897 HOVERGEN:HBG062192 OMA:PGHWDAD OrthoDB:EOG457568
GeneTree:ENSGT00390000008538 EMBL:AY136827 EMBL:BC098652
IPI:IPI00191457 RefSeq:NP_758835.1 UniGene:Rn.8783
ProteinModelPortal:Q8CG07 STRING:Q8CG07 PhosphoSite:Q8CG07
PRIDE:Q8CG07 Ensembl:ENSRNOT00000023332 GeneID:282835
KEGG:rno:282835 UCSC:RGD:628836 InParanoid:Q8CG07 NextBio:624901
ArrayExpress:Q8CG07 Genevestigator:Q8CG07
GermOnline:ENSRNOG00000017040 Uniprot:Q8CG07
Length = 660
Score = 131 (51.2 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 48/173 (27%), Positives = 82/173 (47%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVAR---LGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
P +K RP + D +G AV + L + +P+LIL GPPG GKTT LAH +
Sbjct: 221 PLADKMRPDTLQDYIGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTT----LAHII 276
Query: 71 LGPNYREAV--MELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVV-LDEADSMTAGA 127
+ + ++ + L+A++ + DV R+ IK +K K K ++ +DE
Sbjct: 277 ANNSKKHSIRFVTLSATNAKTNDV-RDVIKQAQNEKSFF---KRKTILFIDEIHRFNKSQ 332
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
Q +E + + A N S ++ + SRC ++ +L E +++ LM
Sbjct: 333 QDTFLPHVECGTITLIGATTENPSFQVNTALLSRCRVIVLEKLPVEAMVTILM 385
Score = 49 (22.3 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPH-PLHVKNMVRNVLEG 250
+ ++ + + +DGD R LN LQ R +++ K Q + P V +V EG
Sbjct: 422 KAVDTLAYLSDGDARTGLNGLQLAVLA-RLSSRKMFCKKSGQTYSPSRVLITENDVKEG 479
>UNIPROTKB|F1P1N3 [details] [associations]
symbol:WRNIP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030174 "regulation
of DNA-dependent DNA replication initiation" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0016887 GO:GO:0000731 GO:GO:0030174 InterPro:IPR021886
Pfam:PF12002 OMA:PGHWDAD GeneTree:ENSGT00390000008538 EMBL:AC157662
IPI:IPI00597973 Ensembl:ENSGALT00000020968 ArrayExpress:F1P1N3
Uniprot:F1P1N3
Length = 559
Score = 124 (48.7 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 51/186 (27%), Positives = 86/186 (46%)
Query: 14 PWVEKYRPTKVCDIVGN---LDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
P ++ RP + D VG L A L + +P+LIL GPPG GKTT LAH +
Sbjct: 119 PLADRLRPDTLRDYVGQERVLGAHTLLRSLLESHEIPSLILWGPPGCGKTT----LAHII 174
Query: 71 LGPNYREAV--MELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQ 128
+ ++ + + L+A+ + DV R+ I AQ + L K ++ +DE Q
Sbjct: 175 ANSSKKKGMRFVTLSATSAKTNDV-RDVISQ-AQNEKRLFKRK-TILFIDEIHRFNKSQQ 231
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKV 188
+E + + A N S ++ + SRC ++ +LS E + + L+ V+ V
Sbjct: 232 DTFLPHVECGTVTLIGATTENPSFQVNAALLSRCRVIVLEKLSVEAMEAILLRAVKSLGV 291
Query: 189 PYVPEG 194
+ +G
Sbjct: 292 QVLGQG 297
Score = 54 (24.1 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 184 QEEKVP-YVPE-GLEAIIFTADGDMRQALNNLQ 214
+ ++P Y+ E L + + DGD R LN LQ
Sbjct: 310 ESSELPVYIEEKALSTLAYLCDGDARTGLNGLQ 342
>DICTYBASE|DDB_G0272158 [details] [associations]
symbol:wrnip1 "putative Werner helicase-interacting
protein 1" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0009378
"four-way junction helicase activity" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR008824
Pfam:PF05496 SMART:SM00382 dictyBase:DDB_G0272158 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0006260 GO:GO:0006281
GenomeReviews:CM000151_GR GO:GO:0006310 EMBL:AAFI02000008
GO:GO:0009378 eggNOG:COG2256 InterPro:IPR021886 Pfam:PF12002
RefSeq:XP_645251.1 ProteinModelPortal:Q75JU2 STRING:Q75JU2
EnsemblProtists:DDB0305118 GeneID:8618418 KEGG:ddi:DDB_G0272158
InParanoid:Q75JU2 Uniprot:Q75JU2
Length = 876
Score = 138 (53.6 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 65/281 (23%), Positives = 121/281 (43%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIAR---DGNMPNLILAGPPGTGKTTSILALAHEL 70
P E+ RPT++ D +G + I+ + +P+ IL GPPG GKTT +A +
Sbjct: 196 PLSEQMRPTELSDFIGQESLLVGDPIVKKLFQSPELPSFILYGPPGCGKTTLAQIVASK- 254
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
NY +NA G V K ++ + + TL GK ++ +DE Q
Sbjct: 255 --SNYN-----INALSAVGSGVKDIK-EVIDKARNTLQFGKKTILFIDEIHRYNKLQQDV 306
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEI---LSRLMVV---VQ 184
L +E A N S ++ + SRC + + +L+ E + + R + V +
Sbjct: 307 LLPAIESGIIILIGATTENPSFELNGALLSRCKVFKMEKLTKENLETLIKRTLEVTPLLM 366
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKV-CDQPHPLHVKNM 243
+ ++ + ++++ ADGD R A+N L + +E +K ++ H +
Sbjct: 367 DRRLIMDEDAIKSLAEIADGDARVAINVLDMAIKANK---EEQTYKERMEEKHS--TSGI 421
Query: 244 VRNVLEGK--FDDACSGLKQLYDLGYSPT-DIITTLFRIIK 281
VR+++ K +YD G ++I+ L + ++
Sbjct: 422 VRDIVLTKKQMGSLLQRTSLIYDKGGDAFYELISALHKSVR 462
>UNIPROTKB|Q8WVB6 [details] [associations]
symbol:CHTF18 "Chromosome transmission fidelity protein 18
homolog" species:9606 "Homo sapiens" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006260
EMBL:CH471112 GO:GO:0007049 GO:GO:0017111 HSSP:P38630
eggNOG:COG0470 EMBL:AK024476 EMBL:AL031033 EMBL:BC006278
EMBL:BC006437 EMBL:BC018184 IPI:IPI00414657 IPI:IPI00872454
IPI:IPI00895945 RefSeq:NP_071375.1 UniGene:Hs.153850
ProteinModelPortal:Q8WVB6 SMR:Q8WVB6 IntAct:Q8WVB6 STRING:Q8WVB6
DMDM:74751544 PaxDb:Q8WVB6 PRIDE:Q8WVB6 Ensembl:ENST00000262315
Ensembl:ENST00000455171 GeneID:63922 KEGG:hsa:63922 UCSC:uc002cke.4
UCSC:uc002ckf.4 CTD:63922 GeneCards:GC16P000838 HGNC:HGNC:18435
MIM:613201 neXtProt:NX_Q8WVB6 PharmGKB:PA134908713
HOVERGEN:HBG062099 KO:K11269 GenomeRNAi:63922 NextBio:65649
ArrayExpress:Q8WVB6 Bgee:Q8WVB6 CleanEx:HS_CHTF18
Genevestigator:Q8WVB6 Uniprot:Q8WVB6
Length = 975
Score = 124 (48.7 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 33/83 (39%), Positives = 46/83 (55%)
Query: 50 ILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPP 109
+L GPPG GKTT LAH ++ + +V+E+NASDDR +V R +I+ Q + L
Sbjct: 371 LLCGPPGLGKTT----LAH-VIARHAGYSVVEMNASDDRSPEVFRTRIEAATQMESVLGA 425
Query: 110 G-KHKVVVLDEADSMTAGAQQAL 131
G K +V+DE D A L
Sbjct: 426 GGKPNCLVIDEIDGAPVAAINVL 448
Score = 59 (25.8 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 20/83 (24%), Positives = 37/83 (44%)
Query: 148 CNVS-SKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDM 206
CN + + ++ + ++ F ++ RL V + + P L A+ D D+
Sbjct: 490 CNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEVSLRQGMRADPGVLAALCEKTDNDI 549
Query: 207 RQALNNLQATYS-GFRFVNQENV 228
R +N LQ YS G R ++ +V
Sbjct: 550 RACINTLQFLYSRGQRELSVRDV 572
>UNIPROTKB|P06710 [details] [associations]
symbol:dnaX species:83333 "Escherichia coli K-12"
[GO:0006260 "DNA replication" evidence=IEA;IMP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IDA] [GO:0043846 "DNA
polymerase III, clamp loader complex" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0030337 "DNA polymerase
processivity factor activity" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] UniProt:P06710 InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR021029 InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170
PRINTS:PR00300 SMART:SM00382 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 EMBL:U82664 EMBL:X04487
EMBL:M38777 GO:GO:0003887 eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 EMBL:X04275 PIR:A25549 RefSeq:NP_415003.1
RefSeq:YP_488761.1 PDB:1JR3 PDB:1NJF PDB:1NJG PDB:1XXH PDB:1XXI
PDB:2AYA PDB:3GLF PDB:3GLG PDB:3GLH PDB:3GLI PDBsum:1JR3
PDBsum:1NJF PDBsum:1NJG PDBsum:1XXH PDBsum:1XXI PDBsum:2AYA
PDBsum:3GLF PDBsum:3GLG PDBsum:3GLH PDBsum:3GLI
ProteinModelPortal:P06710 SMR:P06710 DIP:DIP-9464N IntAct:P06710
MINT:MINT-1222776 PRIDE:P06710 EnsemblBacteria:EBESCT00000003686
EnsemblBacteria:EBESCT00000015762 GeneID:12930852 GeneID:945105
KEGG:ecj:Y75_p0457 KEGG:eco:b0470 PATRIC:32116097 EchoBASE:EB0241
EcoGene:EG10245 HOGENOM:HOG000083934 OMA:VQLYYQT
ProtClustDB:PRK07994 BioCyc:EcoCyc:EG10245-MONOMER
BioCyc:EcoCyc:MONOMER0-2383 BioCyc:ECOL316407:JW0459-MONOMER
BindingDB:P06710 EvolutionaryTrace:P06710 Genevestigator:P06710
GO:GO:0043846 GO:GO:0030337 InterPro:IPR022001 Pfam:PF12168
Length = 643
Score = 127 (49.8 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 34/111 (30%), Positives = 55/111 (49%)
Query: 110 GKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSR 169
G+ KV ++DE ++ + AL +T+E +F LA K+ I SRC
Sbjct: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177
Query: 170 LSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNL-QATYSG 219
L E+I +L ++ EE + + P L+ + A+G +R AL+ QA SG
Sbjct: 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG 228
Score = 51 (23.0 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 18 KYRPTKVCDIVGNLDAVARLGIIARDGNMPNLIL-AGPPGTGKTTSILALAHEL 70
K+RP D+VG + L G + + L +G G GKT+ LA L
Sbjct: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62
>MGI|MGI:1926153 [details] [associations]
symbol:Wrnip1 "Werner helicase interacting protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030174 "regulation of DNA-dependent DNA
replication initiation" evidence=ISO] [GO:0042802 "identical
protein binding" evidence=ISO] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR006642 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
SMART:SM00734 MGI:MGI:1926153 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0003677 GO:GO:0006260
GO:GO:0016887 GO:GO:0000731 GO:GO:0030174 EMBL:AL645808
eggNOG:COG2256 KO:K07478 InterPro:IPR021886 Pfam:PF12002 CTD:56897
HOVERGEN:HBG062192 OMA:PGHWDAD OrthoDB:EOG457568 EMBL:AB056151
EMBL:AK041886 EMBL:AK050368 EMBL:AK082078 EMBL:AK167570
EMBL:AK170542 EMBL:AK170846 EMBL:BC010482 EMBL:BC058744
EMBL:AF208046 IPI:IPI00459468 IPI:IPI00648000 RefSeq:NP_084491.3
UniGene:Mm.286680 ProteinModelPortal:Q91XU0 SMR:Q91XU0
STRING:Q91XU0 PhosphoSite:Q91XU0 PaxDb:Q91XU0 PRIDE:Q91XU0
Ensembl:ENSMUST00000021832 GeneID:78903 KEGG:mmu:78903
UCSC:uc007pzs.2 UCSC:uc007pzt.2 GeneTree:ENSGT00390000008538
InParanoid:Q91XU0 NextBio:349714 Bgee:Q91XU0 CleanEx:MM_WRNIP1
Genevestigator:Q91XU0 GermOnline:ENSMUSG00000021400 Uniprot:Q91XU0
Length = 660
Score = 130 (50.8 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 48/173 (27%), Positives = 82/173 (47%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVAR---LGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
P +K RP + D +G AV + L + +P+LIL GPPG GKTT LAH +
Sbjct: 221 PLADKMRPDTLQDYIGQSRAVGQETLLRSLLEANEIPSLILWGPPGCGKTT----LAHII 276
Query: 71 LGPNYREAV--MELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVV-LDEADSMTAGA 127
+ + ++ + L+A++ + DV R+ IK +K K K ++ +DE
Sbjct: 277 ANNSKKHSIRFVTLSATNAKTNDV-RDVIKQAQNEKSFF---KRKTILFIDEIHRFNKSQ 332
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
Q +E + + A N S ++ + SRC ++ +L E +++ LM
Sbjct: 333 QDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILM 385
Score = 48 (22.0 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 193 EGLEAIIFTADGDMRQALNNLQ 214
+ ++ + + +DGD R LN LQ
Sbjct: 422 KAVDTLAYLSDGDARTGLNGLQ 443
>UNIPROTKB|F1PVV3 [details] [associations]
symbol:WRNIP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 InterPro:IPR021886 Pfam:PF12002
OMA:PGHWDAD GeneTree:ENSGT00390000008538 EMBL:AAEX03017467
Ensembl:ENSCAFT00000014690 Uniprot:F1PVV3
Length = 468
Score = 126 (49.4 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 48/173 (27%), Positives = 81/173 (46%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVAR---LGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
P K RP + D +G AV + L + +P+LIL GPPG GKTT LAH +
Sbjct: 29 PLATKMRPDTLQDYIGQSRAVGQDTLLRSLLETTEIPSLILWGPPGCGKTT----LAHII 84
Query: 71 LGPNYREAV--MELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVV-LDEADSMTAGA 127
+ + ++ + L+A++ + DV R+ IK +K K K ++ +DE
Sbjct: 85 ANNSKKHSIRFVTLSATNAKTNDV-RDVIKQAQNEKSFF---KRKTILFIDEIHRFNKSQ 140
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
Q +E + + A N S ++ + SRC ++ +L E +++ LM
Sbjct: 141 QDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILM 193
Score = 48 (22.0 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 193 EGLEAIIFTADGDMRQALNNLQ 214
+ ++ + + +DGD R LN LQ
Sbjct: 230 KAVDTLAYLSDGDARAGLNGLQ 251
>UNIPROTKB|P0AAZ4 [details] [associations]
symbol:rarA species:83333 "Escherichia coli K-12"
[GO:0030894 "replisome" evidence=IDA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IGI] [GO:0006310 "DNA recombination" evidence=IGI]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006261 GO:GO:0006310 GO:GO:0017111
GO:GO:0030894 EMBL:D49398 eggNOG:COG2256 HOGENOM:HOG000017623
KO:K07478 ProtClustDB:PRK13342 InterPro:IPR021886 Pfam:PF12002
EMBL:X05017 PIR:C64828 RefSeq:NP_415412.1 RefSeq:YP_489164.1
ProteinModelPortal:P0AAZ4 SMR:P0AAZ4 DIP:DIP-48151N IntAct:P0AAZ4
MINT:MINT-1224512 PRIDE:P0AAZ4 EnsemblBacteria:EBESCT00000001727
EnsemblBacteria:EBESCT00000016690 GeneID:12930363 GeneID:945505
KEGG:ecj:Y75_p0864 KEGG:eco:b0892 PATRIC:32116995 EchoBASE:EB2553
EcoGene:EG12690 OMA:TTYYLND BioCyc:EcoCyc:EG12690-MONOMER
BioCyc:ECOL316407:JW0875-MONOMER Genevestigator:P0AAZ4
Uniprot:P0AAZ4
Length = 447
Score = 132 (51.5 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 56/211 (26%), Positives = 94/211 (44%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARD---GNMPNLILAGPPGTGKTTSILALAHEL 70
P + RP + +G +A + R G++ ++IL GPPGTGKTT LA E+
Sbjct: 15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTT--LA---EV 69
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ Y A +E ++ G+ +R I+ Q + G+ ++ +DE Q A
Sbjct: 70 IA-RYANADVERISAVTSGVKEIREAIERARQNRNA---GRRTILFVDEVHRFNKSQQDA 125
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
+E + + A N S ++ + SR + LS E+I L ++++ Y
Sbjct: 126 FLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGY 185
Query: 191 ------VP-EGLEAIIFTADGDMRQALNNLQ 214
+P E AI +GD R+ALN L+
Sbjct: 186 GGQDIVLPDETRRAIAELVNGDARRALNTLE 216
>TAIR|locus:2172013 [details] [associations]
symbol:AT5G45720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
EMBL:CP002688 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
IPI:IPI00536419 RefSeq:NP_199384.2 UniGene:At.51078
UniGene:At.70630 ProteinModelPortal:F4KEM0 SMR:F4KEM0 PRIDE:F4KEM0
EnsemblPlants:AT5G45720.1 GeneID:834611 KEGG:ath:AT5G45720
OMA:ESGRSEI Uniprot:F4KEM0
Length = 966
Score = 136 (52.9 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 63/284 (22%), Positives = 118/284 (41%)
Query: 15 WVEKYRPTKVCDIVG-NLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
+ +KY P D++G NL A IA+ + GP GTGKT+ A L
Sbjct: 345 FTQKYAPRTFRDLLGQNLVVQALSNAIAKRRVGLLYVFHGPNGTGKTSCARVFARALNCH 404
Query: 74 NYREA----VMELNASDDRGID-VVRNK--IKMFA------QKKVTLPPGKHKVVVLDEA 120
+ ++ V S D G + +R +K F + + + V++ D+
Sbjct: 405 STEQSKPCGVCSSCVSYDDGKNRYIREMGPVKSFDFENLLDKTNIRQQQKQQLVLIFDDC 464
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D+M+ L + ++ F L C+ + I SRC F +L D +I+ L
Sbjct: 465 DTMSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLPHIIVSRCQKFFFPKLKDVDIIDSLQ 524
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNL-QATYSGFRF---VNQENVFKVCDQPH 236
++ +E++ + L+ + +DG +R A L Q + G R + QE V + D+
Sbjct: 525 LIASKEEIDIDKDALKLVASRSDGSLRDAEMTLEQLSLLGTRISVPLVQEMVGLISDEK- 583
Query: 237 PLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRII 280
+ +++ L + L+ + + G P +++ L +I
Sbjct: 584 ---LVDLLDLALSADTVNTVKNLRIIMETGLEPLALMSQLATVI 624
>TIGR_CMR|GSU_2067 [details] [associations]
symbol:GSU_2067 "ATPase, AAA family" species:243231
"Geobacter sulfurreducens PCA" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111
HOGENOM:HOG000017623 KO:K07478 ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 OMA:FEVIAPL RefSeq:NP_953116.1
ProteinModelPortal:Q74BH4 GeneID:2686000 KEGG:gsu:GSU2067
PATRIC:22026995 BioCyc:GSUL243231:GH27-1993-MONOMER Uniprot:Q74BH4
Length = 440
Score = 130 (50.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 53/212 (25%), Positives = 94/212 (44%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIAR---DGNMPNLILAGPPGTGKTTSILALAHEL 70
P E+ RP + + VG + ++ R + +LI GPPG+GKTT +A+
Sbjct: 17 PLAERMRPRTLDEYVGQEHLLGEGKLLRRLIESDTLTSLIFWGPPGSGKTTLARVIANAT 76
Query: 71 LGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
+ A++ GI +R +K ++K G++ ++ +DE Q
Sbjct: 77 KSHFIFFSAILS-------GIKEIREIVKEAEEEKKYR--GRNTILFVDEIHRFNKSQQD 127
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
A +E + + A N S +++ P+ SRC ++ + LS E + L + + +
Sbjct: 128 AFLPYVERGTFTIIGATTENPSFEVVAPLLSRCKVLVLNPLSQENVEQILRSALADPERG 187
Query: 190 YVPEGL----EAIIFTAD---GDMRQALNNLQ 214
GL +A+ F A+ GD R ALN L+
Sbjct: 188 LGASGLAADDDALAFMAEQSGGDGRVALNTLE 219
>UNIPROTKB|F1RWX5 [details] [associations]
symbol:WRNIP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0030174 "regulation of DNA-dependent DNA replication
initiation" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0016887 GO:GO:0000731 GO:GO:0030174 InterPro:IPR021886
Pfam:PF12002 OMA:PGHWDAD GeneTree:ENSGT00390000008538 EMBL:CU041352
Ensembl:ENSSSCT00000001102 Uniprot:F1RWX5
Length = 512
Score = 127 (49.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 48/173 (27%), Positives = 80/173 (46%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVAR---LGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
P ++ RP + D VG AV L + +P+LIL GPPG GKTT LAH +
Sbjct: 73 PLADRLRPDALQDFVGQGRAVGPETLLRSLLEANEVPSLILWGPPGCGKTT----LAHII 128
Query: 71 LGPNYREAV--MELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVV-LDEADSMTAGA 127
+ + ++ + L+A+ + DV R+ IK +K K K ++ +DE
Sbjct: 129 ANNSKKHSIRFVTLSATSAKTTDV-RDVIKQAQNEKSFF---KRKTILFIDEIHRFNKSQ 184
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
Q +E + + A N S ++ + SRC ++ +L E +++ LM
Sbjct: 185 QDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAVVTILM 237
Score = 45 (20.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 29/109 (26%), Positives = 44/109 (40%)
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVF-KVCDQPHPLHVKNMVRNVLEGK 251
+ ++ + +DGD R LN LQ R ++ VF K Q +P V V EG
Sbjct: 274 KAVDTLAHLSDGDARAGLNGLQLAVLA-R-LSARKVFGKKTGQTYP---PGRVL-VTEGD 327
Query: 252 FDDACSGLKQLYD-LGYSPTDIITTLFRIIKNYEMAEHLK-LEFMKEAG 298
+ LYD G + I+ L + ++ + L L M E G
Sbjct: 328 VKEGLQRSHILYDRAGEEHYNCISALHKAMRGSDQNAALYWLGRMLEGG 376
>DICTYBASE|DDB_G0272758 [details] [associations]
symbol:chtf18 "chromosome transmission fidelity
protein 18 homolog" species:44689 "Dictyostelium discoideum"
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 dictyBase:DDB_G0272758 GO:GO:0005524
EMBL:AAFI02000008 GO:GO:0017111 eggNOG:COG0470 KO:K11269
RefSeq:XP_001134625.1 ProteinModelPortal:Q86L47
EnsemblProtists:DDB0232234 GeneID:8618623 KEGG:ddi:DDB_G0272758
InParanoid:Q86L47 OMA:QPEGESM ProtClustDB:CLSZ2497422
Uniprot:Q86L47
Length = 937
Score = 102 (41.0 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 28/96 (29%), Positives = 47/96 (48%)
Query: 49 LILAGPPGTGKTTSILALAHELLGP-NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTL 107
++L G PG GKTT LAH L NY +E+NAS+DR + +K+ + K
Sbjct: 281 ILLTGGPGLGKTT----LAHVLAKQANYNP--VEINASEDRSGEAFESKLLSAIEMKSLF 334
Query: 108 PPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTR 143
K +++DE D ++ + +++ NS +
Sbjct: 335 NDNKPNCLIIDEIDGISGRDNGPIELLIKLIDNSLK 370
Score = 72 (30.4 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 18/72 (25%), Positives = 32/72 (44%)
Query: 155 IEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQ 214
+ ++ + + F ++LSRL V+ E + L A+I D+R +N+LQ
Sbjct: 450 LRKLRQKAMVFDFQAPKKNDLLSRLKVICSNEGLSATDATLNALIDMTGSDIRACINSLQ 509
Query: 215 ATYSGFRFVNQE 226
S +N E
Sbjct: 510 FIKSKTTVLNSE 521
Score = 46 (21.3 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 15 WVEKYRPTKVCDIVGN 30
WV+KY PT D++ +
Sbjct: 164 WVDKYAPTSFHDLLSD 179
>UNIPROTKB|F1MGL0 [details] [associations]
symbol:WRNIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0030174 "regulation of DNA-dependent DNA replication
initiation" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0016887 GO:GO:0000731 GO:GO:0030174 InterPro:IPR021886
Pfam:PF12002 OMA:PGHWDAD GeneTree:ENSGT00390000008538
EMBL:DAAA02055908 IPI:IPI00867370 Ensembl:ENSBTAT00000044289
Uniprot:F1MGL0
Length = 489
Score = 124 (48.7 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 49/176 (27%), Positives = 80/176 (45%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVAR---LGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
P + RP + D VG AV L + +P+LIL GPPG GKTT LAH +
Sbjct: 50 PLADTMRPDALQDFVGQGRAVGPETLLRSLLEASEVPSLILWGPPGCGKTT----LAHII 105
Query: 71 LGPNYREAV--MELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVV-LDEADSMTAGA 127
+ + ++ + L+A+ + DV R+ IK +K K K ++ +DE
Sbjct: 106 ANNSKKHSIRFVTLSATSAKTTDV-RDVIKQAQNEKRFF---KRKTILFIDEIHRFNKSQ 161
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
Q +E + + A N S ++ + SRC ++ +L E +++ LM V
Sbjct: 162 QDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAVVTILMRAV 217
Score = 46 (21.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQ 214
E V + ++ + +DGD R LN LQ
Sbjct: 243 ESSVLIEDKAVDTLAHLSDGDARAGLNGLQ 272
>POMBASE|SPAC26H5.02c [details] [associations]
symbol:SPAC26H5.02c "DNA replication ATPase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000731
"DNA synthesis involved in DNA repair" evidence=ISS] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0033567 "DNA replication,
Okazaki fragment processing" evidence=ISO] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR006642 Pfam:PF00004 SMART:SM00382
SMART:SM00734 PomBase:SPAC26H5.02c GO:GO:0005524 GO:GO:0005634
EMBL:CU329670 GO:GO:0046872 GO:GO:0003677 GO:GO:0000731
GO:GO:0043142 GO:GO:0033567 eggNOG:COG2256 HOGENOM:HOG000017623
KO:K07478 OMA:HDEPDAF InterPro:IPR021886 Pfam:PF12002 HSSP:P38251
PIR:T38421 RefSeq:NP_594449.2 ProteinModelPortal:O13984
STRING:O13984 EnsemblFungi:SPAC26H5.02c.1 GeneID:2542096
KEGG:spo:SPAC26H5.02c OrthoDB:EOG4Z924S NextBio:20803168
Uniprot:O13984
Length = 504
Score = 128 (50.1 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 58/218 (26%), Positives = 93/218 (42%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIAR---DGNMPNLILAGPPGTGKTTSILALAHEL 70
P E+ RP + + VG + V GII ++IL G GTGKTT LA L
Sbjct: 85 PLAERARPKSLDEYVGQEELVGERGIIRNLIEQDRCNSMILWGSAGTGKTT--LA---RL 139
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ + +E++A+ D KI +Q +TL G+ ++ LDE Q
Sbjct: 140 IAVTTKSRFIEISATSTTVADC--RKIFEDSQNYLTLT-GRKTIIFLDEVHRFNRAQQDI 196
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDE---EILSRLMVVVQEE- 186
+E + A N S ++ + SRC + +L+ + +IL+ ++ E
Sbjct: 197 FLPMVEKGLVTLIGATTENPSFRLNSALISRCPVFVLKKLTRDNVKKILNHACLLESERL 256
Query: 187 --KVPYVPEGL-EAIIFTADGDMRQALNNLQATYSGFR 221
+P V + + I DGD R ALN L+ + R
Sbjct: 257 GSSMPNVETSIIDYISAITDGDARMALNALEMSIGMLR 294
>TIGR_CMR|BA_4703 [details] [associations]
symbol:BA_4703 "ATP-dependent protease LonB" species:198094
"Bacillus anthracis str. Ames" [GO:0004252 "serine-type
endopeptidase activity" evidence=ISS] [GO:0006508 "proteolysis"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0030436 "asexual sporulation" evidence=ISS] InterPro:IPR002078
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008268
InterPro:IPR008269 InterPro:IPR027065 Pfam:PF00004 Pfam:PF05362
PROSITE:PS01046 PROSITE:PS50045 SMART:SM00382 GO:GO:0005524
GO:GO:0006355 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006508 GO:GO:0006351
GO:GO:0004252 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 InterPro:IPR025943
PROSITE:PS00676 GO:GO:0004176 PANTHER:PTHR10046 HSSP:P08177
HOGENOM:HOG000054711 KO:K04076 OMA:LYFWNLL ProtClustDB:CLSK873492
InterPro:IPR014251 TIGRFAMs:TIGR02902 RefSeq:NP_846916.1
RefSeq:YP_021351.1 RefSeq:YP_030615.1 ProteinModelPortal:Q81LC0
IntAct:Q81LC0 DNASU:1083686 EnsemblBacteria:EBBACT00000010075
EnsemblBacteria:EBBACT00000014143 EnsemblBacteria:EBBACT00000022575
GeneID:1083686 GeneID:2816064 GeneID:2851723 KEGG:ban:BA_4703
KEGG:bar:GBAA_4703 KEGG:bat:BAS4368
BioCyc:BANT260799:GJAJ-4423-MONOMER
BioCyc:BANT261594:GJ7F-4571-MONOMER Uniprot:Q81LC0
Length = 557
Score = 105 (42.0 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 32/86 (37%), Positives = 42/86 (48%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI-LALAHELLG 72
P EK RPT DIVG D + L N ++I+ GPPG GKT + L L
Sbjct: 59 PLAEKVRPTSFLDIVGQEDGIKSLKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKRN 118
Query: 73 PN--YRE--AVMELNAS----DDRGI 90
P +R +EL+A+ D+RGI
Sbjct: 119 PKSPFRTNATFIELDATTARFDERGI 144
Score = 66 (28.3 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 27/89 (30%), Positives = 43/89 (48%)
Query: 143 RFALACNVSSKIIEP-IQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAI-IF 200
R A S + I P I+SRC V F L EEI + ++ G+E I ++
Sbjct: 240 RLVGATTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAADKVEMQIGENGIEMIGMY 299
Query: 201 TADGDMRQALNNLQATYSGFRFVNQENVF 229
+G R+A+N +Q + +G +N+E F
Sbjct: 300 ARNG--REAINLVQIS-AGMA-INEERSF 324
>DICTYBASE|DDB_G0285961 [details] [associations]
symbol:rfc1 "replication factor C subunit 1"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003689 "DNA clamp loader activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 dictyBase:DDB_G0285961
Pfam:PF00533 GO:GO:0005524 GO:GO:0005634 GenomeReviews:CM000153_GR
GO:GO:0006355 GO:GO:0006351 GO:GO:0006298 EMBL:AAFI02000082
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 HSSP:P38630
GO:GO:0003689 eggNOG:COG0272 GO:GO:0006272 SUPFAM:SSF48019
GO:GO:0005663 RefSeq:XP_638011.1 ProteinModelPortal:Q54MH9
STRING:Q54MH9 EnsemblProtists:DDB0232230 GeneID:8625362
KEGG:ddi:DDB_G0285961 KO:K10754 OMA:IIELSTW Uniprot:Q54MH9
Length = 1401
Score = 132 (51.5 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 48/203 (23%), Positives = 90/203 (44%)
Query: 42 RDGNMPN-LILAGPPGTGKTTSILALAH----ELLGPNYREA-----VMEL--NASDDRG 89
RD + N ++L+GPPG GKT++ L + E + N +A + L SD++
Sbjct: 886 RDASKKNAVLLSGPPGIGKTSAALLICKQKGFEAIELNASDARSKSEIKRLLSGVSDNQN 945
Query: 90 IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA-LRRTMEIYSNSTR-FALA 147
I K V ++LDE D + + + + + + S F
Sbjct: 946 ITKFFGTTNQDTGKDVQANKKIKTAIILDEIDGSSGNSDRGGIAEIIGLIKKSKMPFICL 1005
Query: 148 CN--VSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGD 205
CN SSK+ +++ C ++ + + ++ SRL+ + + E + +E + ++ D
Sbjct: 1006 CNDYYSSKVTS-LRNHCMDLKLRKPTLNQVSSRLLAIAKHEGMKVSSYMIEKVYTSSHSD 1064
Query: 206 MRQALNNLQATYSGFRFVNQENV 228
+RQ++N LQ R N +NV
Sbjct: 1065 IRQSINTLQMMSRSKRDYNNDNV 1087
Score = 126 (49.4 bits), Expect = 0.00019, P = 0.00019
Identities = 36/87 (41%), Positives = 48/87 (55%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLG--------IIARDGNMPN-LILAGPPGTGKTT 61
+DI WVEKYRP + DIVGN G RD + N ++L+GPPG GKT+
Sbjct: 847 HDILWVEKYRPKVIEDIVGNPGIFQEFGKWLDQWNSTAPRDASKKNAVLLSGPPGIGKTS 906
Query: 62 SILALAHELLGPNYREAVMELNASDDR 88
+ L + + + EA+ ELNASD R
Sbjct: 907 AALLICKQ---KGF-EAI-ELNASDAR 928
>TIGR_CMR|SO_2308 [details] [associations]
symbol:SO_2308 "ATPase, AAA family" species:211586
"Shewanella oneidensis MR-1" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111
HOGENOM:HOG000017623 KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 HSSP:Q56313 RefSeq:NP_717903.2
ProteinModelPortal:Q8EER1 GeneID:1170033 KEGG:son:SO_2308
PATRIC:23524239 Uniprot:Q8EER1
Length = 443
Score = 126 (49.4 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 53/211 (25%), Positives = 90/211 (42%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVAR---LGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
P + RP + + +G + L G +++L GPPGTGKTT +AH
Sbjct: 14 PLAARMRPRTIAEYIGQAHLLGEGQPLRQALEAGRAHSMMLWGPPGTGKTTLAELIAH-- 71
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
Y A +E ++ G+ +R I+ AQ + G+ ++ +DE Q A
Sbjct: 72 ----YSNAHVERISAVTSGVKDIRGAIEQ-AQA-IAQSRGQRTLLFVDEVHRFNKSQQDA 125
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE----- 185
+E + A N S +I + SR + RLS +EI+ + + +
Sbjct: 126 FLPFIEDGTVIFIGATTENPSFEINNALLSRARVYLIKRLSQDEIVHIITQALADTERGL 185
Query: 186 -EKVPYVP-EGLEAIIFTADGDMRQALNNLQ 214
++ +P + L + DGD R+ALN L+
Sbjct: 186 GQRALNMPTDVLNKLAQLCDGDARKALNLLE 216
>UNIPROTKB|Q96S55 [details] [associations]
symbol:WRNIP1 "ATPase WRNIP1" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0016887 "ATPase activity" evidence=IMP]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=IDA]
[GO:0030174 "regulation of DNA-dependent DNA replication
initiation" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IMP] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR006642
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 SMART:SM00734
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0016887
EMBL:CH471087 GO:GO:0000731 GO:GO:0030174 PDB:3VHT PDBsum:3VHT
EMBL:AL139092 eggNOG:COG2256 InterPro:IPR021886 Pfam:PF12002
EMBL:AB056152 EMBL:AK026179 EMBL:AK315471 EMBL:AB209723
EMBL:AK223593 EMBL:BC018923 EMBL:AF218313 IPI:IPI00102997
IPI:IPI00290314 IPI:IPI00642533 IPI:IPI00645459 RefSeq:NP_064520.2
RefSeq:NP_569079.1 UniGene:Hs.236828 PDB:3VHS PDBsum:3VHS
ProteinModelPortal:Q96S55 SMR:Q96S55 IntAct:Q96S55 STRING:Q96S55
PhosphoSite:Q96S55 DMDM:73622085 PaxDb:Q96S55 PRIDE:Q96S55
DNASU:56897 Ensembl:ENST00000380764 Ensembl:ENST00000380769
Ensembl:ENST00000380771 Ensembl:ENST00000380773 GeneID:56897
KEGG:hsa:56897 UCSC:uc003mtz.3 UCSC:uc003mua.3 CTD:56897
GeneCards:GC06P002710 H-InvDB:HIX0005529 HGNC:HGNC:20876
HPA:HPA031752 MIM:608196 neXtProt:NX_Q96S55 PharmGKB:PA134982239
HOVERGEN:HBG062192 InParanoid:Q96S55 OMA:PGHWDAD OrthoDB:EOG457568
PhylomeDB:Q96S55 GenomeRNAi:56897 NextBio:62333 Bgee:Q96S55
CleanEx:HS_WRNIP1 Genevestigator:Q96S55 GermOnline:ENSG00000124535
Uniprot:Q96S55
Length = 665
Score = 122 (48.0 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 47/173 (27%), Positives = 80/173 (46%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVAR---LGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
P + RP + D G AV + L + +P+LIL GPPG GKTT LAH +
Sbjct: 226 PLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTT----LAHII 281
Query: 71 LGPNYREAV--MELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVV-LDEADSMTAGA 127
+ + ++ + L+A++ + DV R+ IK +K K K ++ +DE
Sbjct: 282 ASNSKKHSIRFVTLSATNAKTNDV-RDVIKQAQNEKSFF---KRKTILFIDEIHRFNKSQ 337
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
Q +E + + A N S ++ + SRC ++ +L E +++ LM
Sbjct: 338 QDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILM 390
Score = 49 (22.3 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPH-PLHVKNMVRNVLEG 250
+ ++ + + +DGD R LN LQ R +++ K Q + P V +V EG
Sbjct: 427 KAVDTLAYLSDGDARAGLNGLQLAVLA-RLSSRKMFCKKSGQSYSPSRVLITENDVKEG 484
>POMBASE|SPBC902.02c [details] [associations]
symbol:ctf18 "RFC-like complex subunit Ctf18"
species:4896 "Schizosaccharomyces pombe" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005657
"replication fork" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=IC] [GO:0045132 "meiotic
chromosome segregation" evidence=IMP] [GO:0051455 "attachment of
spindle microtubules to kinetochore involved in homologous
chromosome segregation" evidence=IMP] [GO:0003689 "DNA clamp loader
activity" evidence=TAS] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 PomBase:SPBC902.02c GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0017111
eggNOG:COG0470 GO:GO:0005657 GO:GO:0051455 KO:K11269 EMBL:AB027926
PIR:T50383 RefSeq:NP_595200.1 ProteinModelPortal:Q9USQ1
STRING:Q9USQ1 EnsemblFungi:SPBC902.02c.1 GeneID:2541270
KEGG:spo:SPBC902.02c OrthoDB:EOG4HDX3F NextBio:20802382
GO:GO:0031390 GO:GO:0007062 Uniprot:Q9USQ1
Length = 960
Score = 110 (43.8 bits), Expect = 4.4e-05, Sum P(3) = 4.4e-05
Identities = 35/117 (29%), Positives = 53/117 (45%)
Query: 40 IARDGNMPN---LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNK 96
I D + P+ ++L G G GKTT +AH+ Y+ V+E+NASDDR V K
Sbjct: 407 ITSDSDRPDKRIMMLTGLAGAGKTTLAHVIAHQA---GYK--VLEINASDDRTAHTVHEK 461
Query: 97 IKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSK 153
+ L + V++DE D +AL +E +T ++ A N K
Sbjct: 462 VSSAISNHSALS-SQPTCVIVDEIDGGDPAFVRALLSLLESDEKATEYSQAGNSKKK 517
Score = 61 (26.5 bits), Expect = 4.4e-05, Sum P(3) = 4.4e-05
Identities = 15/82 (18%), Positives = 35/82 (42%)
Query: 148 CN-VSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDM 206
CN + + + P++ I+ F ++ RL + + E + L + + D+
Sbjct: 531 CNDLYTPALRPLRPYAQIIYFRPPPQASLVGRLRTICRNENIAVDSRSLTLLTDIYNSDI 590
Query: 207 RQALNNLQATYSGFRFVNQENV 228
R +N+LQ + ++ E +
Sbjct: 591 RSCINSLQLLSLNNKRIDSETI 612
Score = 44 (20.5 bits), Expect = 4.4e-05, Sum P(3) = 4.4e-05
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 15 WVEKYRPTKVCDIVGN 30
WV+ YRP D++G+
Sbjct: 353 WVDTYRPQLFRDLLGD 368
>UNIPROTKB|E7EXA6 [details] [associations]
symbol:CHTF18 "Chromosome transmission fidelity protein 18
homolog" species:9606 "Homo sapiens" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 GO:GO:0005524 GO:GO:0017111
EMBL:AL031033 HGNC:HGNC:18435 IPI:IPI00178203
ProteinModelPortal:E7EXA6 SMR:E7EXA6 PRIDE:E7EXA6
Ensembl:ENST00000317063 OMA:TMLAYNL PhylomeDB:E7EXA6
ArrayExpress:E7EXA6 Bgee:E7EXA6 Uniprot:E7EXA6
Length = 1184
Score = 124 (48.7 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 33/83 (39%), Positives = 46/83 (55%)
Query: 50 ILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPP 109
+L GPPG GKTT LAH ++ + +V+E+NASDDR +V R +I+ Q + L
Sbjct: 566 LLCGPPGLGKTT----LAH-VIARHAGYSVVEMNASDDRSPEVFRTRIEAATQMESVLGA 620
Query: 110 G-KHKVVVLDEADSMTAGAQQAL 131
G K +V+DE D A L
Sbjct: 621 GGKPNCLVIDEIDGAPVAAINVL 643
Score = 52 (23.4 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 177 SRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS-GFRFVNQENV 228
SRL+ +QE + P L A+ D D+R +N LQ YS G R ++ +V
Sbjct: 711 SRLVQRLQEG-MRADPGVLAALCEKTDNDIRACINTLQFLYSRGQRELSVRDV 762
>UNIPROTKB|E2QW76 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0003689 "DNA clamp
loader activity" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 OMA:GQINFPG EMBL:AAEX03002535
Ensembl:ENSCAFT00000025512 Uniprot:E2QW76
Length = 1152
Score = 122 (48.0 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 45/179 (25%), Positives = 80/179 (44%)
Query: 50 ILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIK------MFAQK 103
+L+GPPG GKTT+ + EL G +Y E S + +VV + ++
Sbjct: 646 LLSGPPGVGKTTTASLVCQEL-GYSYVELNASDTRSKNSLKEVVAESLNNTSITGFYSTS 704
Query: 104 KVTLPPGKHKV-----VVLDEADSMTAGAQQA-LRRTMEIYSNSTRFALACNVSSKIIEP 157
+ H V +++DE D M + ++ + + + T+ + C + +
Sbjct: 705 QHGSDGAAHSVGSKHALIMDEVDGMAGNEDRGGIQELIGLIKH-TKIPIICMCNDRNHPK 763
Query: 158 IQSR---CAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNL 213
I+S C +RF R E+I +M + +E + P + II A+ D+RQ L+NL
Sbjct: 764 IRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNL 822
Score = 53 (23.7 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 15 WVEKYRPTKVCDIVG 29
WV+KY+PT + I+G
Sbjct: 584 WVDKYKPTSLKTIIG 598
>UNIPROTKB|P39918 [details] [associations]
symbol:rarA "Replication-associated recombination protein
A" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017111 EMBL:X75627
PIR:S43134 RefSeq:NP_820184.4 ProteinModelPortal:P39918 SMR:P39918
GeneID:1209093 KEGG:cbu:CBU_1189 PATRIC:17931123 eggNOG:COG2256
HOGENOM:HOG000017623 KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342
BioCyc:CBUR227377:GJ7S-1178-MONOMER InterPro:IPR021886 Pfam:PF12002
Uniprot:P39918
Length = 440
Score = 124 (48.7 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 56/212 (26%), Positives = 97/212 (45%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIAR---DGNMPNLILAGPPGTGKTTSILALAHE 69
IP + RP + + VG + + + R G + ++IL GPPG+GKTT +A +
Sbjct: 8 IPLATRMRPGCLEEFVGQSHLLGKDKPLFRAIEKGKLHSMILWGPPGSGKTTLAEIIAQK 67
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
G E++ + A G+ +R+ ++ + K G+ ++ +DE Q
Sbjct: 68 A-GARV-ESISAVLA----GVKDIRDVVERAERHK-----GQATILFVDEVHGFNKSQQD 116
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM-VVVQEE-- 186
A +E + + A N S ++ + SR + +L++ ++LS L + EE
Sbjct: 117 AFLPHVEKGTITLIGATTENPSFQLNNALLSRTRVYVLKQLTEADLLSILENALANEERG 176
Query: 187 ---KVPYVPEGLEA-IIFTADGDMRQALNNLQ 214
K +PE L I+ ADGD RQ LN L+
Sbjct: 177 LGKKALEIPEPLRRRIVQFADGDARQCLNLLE 208
>TIGR_CMR|CBU_1189 [details] [associations]
symbol:CBU_1189 "ATPase, AAA family domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0016887 "ATPase activity"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0017111 EMBL:X75627 PIR:S43134 RefSeq:NP_820184.4
ProteinModelPortal:P39918 SMR:P39918 GeneID:1209093
KEGG:cbu:CBU_1189 PATRIC:17931123 eggNOG:COG2256
HOGENOM:HOG000017623 KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342
BioCyc:CBUR227377:GJ7S-1178-MONOMER InterPro:IPR021886 Pfam:PF12002
Uniprot:P39918
Length = 440
Score = 124 (48.7 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 56/212 (26%), Positives = 97/212 (45%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIAR---DGNMPNLILAGPPGTGKTTSILALAHE 69
IP + RP + + VG + + + R G + ++IL GPPG+GKTT +A +
Sbjct: 8 IPLATRMRPGCLEEFVGQSHLLGKDKPLFRAIEKGKLHSMILWGPPGSGKTTLAEIIAQK 67
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
G E++ + A G+ +R+ ++ + K G+ ++ +DE Q
Sbjct: 68 A-GARV-ESISAVLA----GVKDIRDVVERAERHK-----GQATILFVDEVHGFNKSQQD 116
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM-VVVQEE-- 186
A +E + + A N S ++ + SR + +L++ ++LS L + EE
Sbjct: 117 AFLPHVEKGTITLIGATTENPSFQLNNALLSRTRVYVLKQLTEADLLSILENALANEERG 176
Query: 187 ---KVPYVPEGLEA-IIFTADGDMRQALNNLQ 214
K +PE L I+ ADGD RQ LN L+
Sbjct: 177 LGKKALEIPEPLRRRIVQFADGDARQCLNLLE 208
>ZFIN|ZDB-GENE-040426-2415 [details] [associations]
symbol:wrnip1 "Werner helicase interacting protein
1" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
ZFIN:ZDB-GENE-040426-2415 GO:GO:0005524 GO:GO:0017111
eggNOG:COG2256 HOGENOM:HOG000017623 KO:K07478 InterPro:IPR021886
Pfam:PF12002 CTD:56897 HOVERGEN:HBG062192 OMA:PGHWDAD
OrthoDB:EOG457568 GeneTree:ENSGT00390000008538 EMBL:CU693494
EMBL:BC067729 IPI:IPI00503321 RefSeq:NP_998085.1 UniGene:Dr.82012
STRING:Q6NW46 Ensembl:ENSDART00000004848 GeneID:405856
KEGG:dre:405856 InParanoid:Q6NW46 NextBio:20817818 Uniprot:Q6NW46
Length = 546
Score = 124 (48.7 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 62/223 (27%), Positives = 93/223 (41%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVAR---LGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
P E RP+ + + G + L + + +P+LIL GPPG GKTT +A +
Sbjct: 116 PLAELLRPSTLEEYFGQNKLIGEQTLLRSLLKSQEIPSLILWGPPGCGKTTLAHIIASSI 175
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
V L+A+ + VR IK AQ ++ L K V+ +DE Q
Sbjct: 176 KQKGTGRFVT-LSATS-ASVSDVREVIKQ-AQNELRLCKRK-TVLFIDEIHRFNKSQQDT 231
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDE---EILSR------LMV 181
+E + + A N S ++ + SRC ++ RLS E IL R L +
Sbjct: 232 FLPHVECGTITLIGATTENPSFQVNSALLSRCRVLVLERLSVEAVGSILRRAVDFLDLRI 291
Query: 182 VVQEEK----------VPYVPEGLEAIIFTADGDMRQALNNLQ 214
+ EE+ V + L+ + DGD R ALN LQ
Sbjct: 292 LDSEERHSSEICSEAQVCVEQKALDTLAHLCDGDARAALNGLQ 334
>TIGR_CMR|CPS_2757 [details] [associations]
symbol:CPS_2757 "ATPase, AAA family" species:167879
"Colwellia psychrerythraea 34H" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008824 Pfam:PF05496 SMART:SM00382
GO:GO:0000166 GO:GO:0006281 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0006310 GO:GO:0009378 eggNOG:COG2256 HOGENOM:HOG000017623
KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342 InterPro:IPR021886
Pfam:PF12002 RefSeq:YP_269469.1 ProteinModelPortal:Q480Q0
SMR:Q480Q0 STRING:Q480Q0 GeneID:3522496 KEGG:cps:CPS_2757
PATRIC:21468551 BioCyc:CPSY167879:GI48-2818-MONOMER Uniprot:Q480Q0
Length = 511
Score = 122 (48.0 bits), Expect = 0.00014, P = 0.00014
Identities = 65/280 (23%), Positives = 117/280 (41%)
Query: 13 IPWVEKYRPTKVCDIVGN---LDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
+P K RP + D VG L + L G+ +LI GPPG+GKTT LA E
Sbjct: 57 MPLAAKMRPKTLADYVGQQHILGGDSPLAQSIEQGHCHSLIFWGPPGSGKTT--LA---E 111
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVV-LDEADSMTAGAQ 128
++ + A +E ++ GI +R+ I+ + K + V+ +DE Q
Sbjct: 112 IIA-QHANAEIERVSAVTSGIKEIRSAIEKAKLRAQGEGANKRRTVLFVDEVHRFNKSQQ 170
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLS-DE--EILSRLMVVVQE 185
A +E + A N + ++ + + SR + +L+ D+ ++L R + + +
Sbjct: 171 DAFLPHIEDGTIIFIGATTENPAFELNQALLSRARLYTLKKLTRDDLAQVLQRAISLCEA 230
Query: 186 EK---VPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
E+ + + ++++ +DGD R+ LN L+ EN K DQ V
Sbjct: 231 EQQLSIKLSVDAKQSLLNRSDGDARRLLNLLENCLDS-SVTTHEN--KQDDQHGEQGVSG 287
Query: 243 MVRNVLEGKFDDACSGLKQLYDLGYSPT-DIITTLFRIIK 281
++ V LYD G D+I+ + ++
Sbjct: 288 DIKTVTVELIAQVAGSKIALYDKGGDAFYDLISAFHKSVR 327
>UNIPROTKB|F8WCC1 [details] [associations]
symbol:CHTF18 "Chromosome transmission fidelity protein 18
homolog" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR003959 Pfam:PF00004 GO:GO:0005524
EMBL:AL031033 HGNC:HGNC:18435 IPI:IPI00927525
ProteinModelPortal:F8WCC1 SMR:F8WCC1 Ensembl:ENST00000440239
ArrayExpress:F8WCC1 Bgee:F8WCC1 Uniprot:F8WCC1
Length = 456
Score = 121 (47.7 bits), Expect = 0.00015, P = 0.00015
Identities = 31/73 (42%), Positives = 44/73 (60%)
Query: 50 ILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPP 109
+L GPPG GKTT LAH ++ + +V+E+NASDDR +V R +I+ Q + L
Sbjct: 372 LLCGPPGLGKTT----LAH-VIARHAGYSVVEMNASDDRSPEVFRTRIEAATQMESVLGA 426
Query: 110 G-KHKVVVLDEAD 121
G K +V+DE D
Sbjct: 427 GGKPNCLVIDEID 439
>ASPGD|ASPL0000006457 [details] [associations]
symbol:AN6694 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0051455
"attachment of spindle microtubules to kinetochore involved in
homologous chromosome segregation" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0007049
EMBL:BN001301 GO:GO:0017111 eggNOG:COG0470 EMBL:AACD01000112
ProteinModelPortal:P0C1D3 EnsemblFungi:CADANIAT00007479
HOGENOM:HOG000180892 OMA:YNEGFSN OrthoDB:EOG4S1XG8 Uniprot:P0C1D3
Length = 993
Score = 108 (43.1 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 35/91 (38%), Positives = 51/91 (56%)
Query: 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIK--MFAQ--KK 104
L+L GPPG GKTT LAH E V+E+NASD+R DVV+ +I+ + + K
Sbjct: 317 LLLCGPPGLGKTT----LAHVCARQAGYE-VLEINASDERSRDVVKGRIRDALGTENVKG 371
Query: 105 VTLPPGKHKV--------VVLDEADSMTAGA 127
+ + G+ KV VV+DE D + +G+
Sbjct: 372 MNVELGEQKVRKVGRPVCVVVDEVDGVVSGS 402
Score = 52 (23.4 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 23/108 (21%), Positives = 48/108 (44%)
Query: 114 VVVLDEADSMTAG--AQQALRRTMEIYSNSTRFALACN-VSSKIIEPI-QSRCA-IVRFS 168
+V+LD+ +S A +R + + L CN V + P+ QS A I+
Sbjct: 417 LVLLDQRNSARTSERASDGRKRKGDNFRFLRPLILVCNDVYHASLRPLRQSSVAEIIHVR 476
Query: 169 RLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT 216
+ E ++SR+ + E +P +G+ + + G ++ +++T
Sbjct: 477 QAPLENVVSRMKSIFTLEGIPSDSDGVRRLCEASWGLAKRKQRGVRST 524
Score = 48 (22.0 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 15 WVEKYRPTKVCDIVGN 30
W EKYR K +++G+
Sbjct: 258 WTEKYRARKYTELIGD 273
>RGD|1310473 [details] [associations]
symbol:Chtf18 "CTF18, chromosome transmission fidelity factor 18
homolog (S. cerevisiae)" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0009360 "DNA polymerase III complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR010372 Pfam:PF00004 Pfam:PF06144 SMART:SM00382
RGD:1310473 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 EMBL:CH473948 GO:GO:0003887 CTD:63922
KO:K11269 GeneTree:ENSGT00550000075029 OrthoDB:EOG44QT0B
GO:GO:0009360 OMA:TMLAYNL IPI:IPI00369267 RefSeq:NP_001099243.1
UniGene:Rn.53402 Ensembl:ENSRNOT00000026139 GeneID:287146
KEGG:rno:287146 UCSC:RGD:1310473 NextBio:625609 Uniprot:D4AC99
Length = 968
Score = 115 (45.5 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 31/83 (37%), Positives = 44/83 (53%)
Query: 50 ILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPP 109
+L GPPG GKTT LAH ++ + V+E+NASDDR + R +I+ Q + L
Sbjct: 364 LLCGPPGLGKTT----LAH-VVARHAGYCVVEMNASDDRSPEAFRTRIEAATQMESVLGA 418
Query: 110 G-KHKVVVLDEADSMTAGAQQAL 131
G + +V+DE D A L
Sbjct: 419 GGRPNCLVIDEIDGAPTAAINVL 441
Score = 52 (23.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 175 ILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS-GFRFVNQENV 228
++ RL + + + P L A+ D D+R +N LQ Y G R ++ ++V
Sbjct: 511 LVQRLQEISLQHGMRSDPGALAALCEKTDNDIRACINTLQFLYGRGQRELSVKDV 565
>MGI|MGI:2384887 [details] [associations]
symbol:Chtf18 "CTF18, chromosome transmission fidelity
factor 18" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
MGI:MGI:2384887 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006260 GO:GO:0007049 GO:GO:0017111 HSSP:P38630
eggNOG:COG0470 CTD:63922 HOVERGEN:HBG062099 KO:K11269 EMBL:AK077947
EMBL:BC024142 IPI:IPI00153429 RefSeq:NP_663384.2 UniGene:Mm.102540
ProteinModelPortal:Q8BIW9 SMR:Q8BIW9 STRING:Q8BIW9
PhosphoSite:Q8BIW9 PaxDb:Q8BIW9 PRIDE:Q8BIW9
Ensembl:ENSMUST00000048054 GeneID:214901 KEGG:mmu:214901
UCSC:uc008bbk.2 GeneTree:ENSGT00550000075029 HOGENOM:HOG000067805
InParanoid:Q8BIW9 OrthoDB:EOG44QT0B NextBio:374509 Bgee:Q8BIW9
Genevestigator:Q8BIW9 Uniprot:Q8BIW9
Length = 969
Score = 114 (45.2 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 31/83 (37%), Positives = 44/83 (53%)
Query: 50 ILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPP 109
+L GPPG GKTT LAH ++ + V+E+NASDDR + R +I+ Q + L
Sbjct: 366 LLCGPPGLGKTT----LAH-VVARHAGYCVVEMNASDDRSPEAFRTRIEAATQMESVLGV 420
Query: 110 G-KHKVVVLDEADSMTAGAQQAL 131
G + +V+DE D A L
Sbjct: 421 GGRPNCLVIDEIDGAPTAAINVL 443
Score = 53 (23.7 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 23/101 (22%), Positives = 39/101 (38%)
Query: 119 EADSM-TAGAQQALRRTMEIYSNSTRFALACNVS-SKIIEPIQSRCAIVRFSRLSDEEIL 176
EAD TA A RR E + CN + + ++ + ++ ++
Sbjct: 454 EADQGGTAVAAGGRRRRAEGGLLTRPIICICNDQFTPSLRQLKQQALLLHVPPTLPSRLV 513
Query: 177 SRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY 217
RL + + + P L A+ D D+R +N LQ Y
Sbjct: 514 QRLQEISLQHGMRSDPGALVALCEKTDNDIRACINTLQFLY 554
>TAIR|locus:2121934 [details] [associations]
symbol:AT4G24790 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0009360 "DNA polymerase III complex"
evidence=IEA] InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 GO:GO:0005524 EMBL:CP002687
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 GO:GO:0009360
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 IPI:IPI00532502
RefSeq:NP_001119046.1 RefSeq:NP_194210.2 UniGene:At.54505
ProteinModelPortal:F4JRP8 SMR:F4JRP8 PRIDE:F4JRP8
EnsemblPlants:AT4G24790.1 EnsemblPlants:AT4G24790.2 GeneID:828581
KEGG:ath:AT4G24790 OMA:TWLTVAL Uniprot:F4JRP8
Length = 857
Score = 105 (42.0 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 27/109 (24%), Positives = 52/109 (47%)
Query: 103 KKVTLPP--GKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQS 160
K +LPP + KV ++DE + L +++ +S + F L + K+ + S
Sbjct: 345 KSASLPPVSSRFKVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVLS 404
Query: 161 RCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQA 209
R FS++ D +I ++L + EE + + ++ I +DG +R A
Sbjct: 405 RSQKYHFSKVCDADISTKLAKICIEEGIDFDQGAVDFIASKSDGSLRDA 453
Score = 61 (26.5 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 17 EKYRPTKVCDIVGNLDAVAR--LGIIARDGNMPNLILA-GPPGTGKTTS 62
+K+RP ++VG + V + L I R G + ++ L GP GTGKT++
Sbjct: 243 QKFRPKSFDELVGQ-EVVVKCLLSTILR-GRITSVYLFHGPRGTGKTST 289
>UNIPROTKB|E1B8Q4 [details] [associations]
symbol:CHTF18 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0017111 CTD:63922
KO:K11269 GeneTree:ENSGT00550000075029 OMA:TMLAYNL
EMBL:DAAA02057284 IPI:IPI00717859 RefSeq:NP_001179389.1
UniGene:Bt.60318 Ensembl:ENSBTAT00000026311 GeneID:517007
KEGG:bta:517007 NextBio:20872353 Uniprot:E1B8Q4
Length = 978
Score = 117 (46.2 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 31/88 (35%), Positives = 46/88 (52%)
Query: 50 ILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPP 109
+L GPPG GKTT LAH ++ + V+E+NASDDR + R +I+ Q + L
Sbjct: 372 LLCGPPGLGKTT----LAH-VIARHAGYCVVEMNASDDRSPEAFRTRIEAATQMESVLGA 426
Query: 110 G-KHKVVVLDEADSMTAGAQQALRRTME 136
G + +V+DE D A L ++
Sbjct: 427 GGRPNCLVIDEIDGAPTAAINVLLSVLD 454
Score = 49 (22.3 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 12/60 (20%), Positives = 25/60 (41%)
Query: 155 IEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQ 214
+ ++ + ++ F ++ RL + + P L A+ D D+R +N LQ
Sbjct: 499 LRQLKQQALLLHFPPTLPSRLMQRLQEISLRRGMRADPGALAALCEKTDNDIRACINALQ 558
>UNIPROTKB|I3LC39 [details] [associations]
symbol:CHTF18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0017111
GeneTree:ENSGT00550000075029 OMA:TMLAYNL EMBL:FP016225
Ensembl:ENSSSCT00000031631 Uniprot:I3LC39
Length = 1007
Score = 117 (46.2 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 31/88 (35%), Positives = 46/88 (52%)
Query: 50 ILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPP 109
+L GPPG GKTT LAH ++ + V+E+NASDDR + R +I+ Q + L
Sbjct: 404 LLCGPPGLGKTT----LAH-VIARHAGYCVVEMNASDDRSPEAFRTRIEAATQMESVLGS 458
Query: 110 G-KHKVVVLDEADSMTAGAQQALRRTME 136
G + +V+DE D A L ++
Sbjct: 459 GGRPNCLVIDEIDGAPTAAINVLLSVLD 486
Score = 49 (22.3 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 177 SRLMVVVQEEK-VPYVPEGLEAIIFTADGDMRQALNNLQ 214
SRL +QE++ + P L A+ D D+R +N LQ
Sbjct: 549 SRLTQRLQEQRGMQADPGALAALCEKTDNDIRACINALQ 587
>TIGR_CMR|BA_0028 [details] [associations]
symbol:BA_0028 "DNA polymerase III, delta prime subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR004622 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006260
GO:GO:0008408 GO:GO:0003887 KO:K02341 TIGRFAMs:TIGR00678
HOGENOM:HOG000192593 RefSeq:NP_842598.1 RefSeq:YP_016633.2
RefSeq:YP_026317.1 ProteinModelPortal:Q81W10 DNASU:1085794
EnsemblBacteria:EBBACT00000013310 EnsemblBacteria:EBBACT00000013749
EnsemblBacteria:EBBACT00000019869 GeneID:1085794 GeneID:2816307
GeneID:2852708 KEGG:ban:BA_0028 KEGG:bar:GBAA_0028 KEGG:bat:BAS0030
OMA:RIESGNH ProtClustDB:PRK08058 BioCyc:BANT260799:GJAJ-37-MONOMER
BioCyc:BANT261594:GJ7F-38-MONOMER Uniprot:Q81W10
Length = 327
Score = 114 (45.2 bits), Expect = 0.00053, P = 0.00053
Identities = 31/93 (33%), Positives = 48/93 (51%)
Query: 89 GIDVVRNKIKMFAQK--KVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFAL 146
G+ + + +I ++ K L K KV +++ AD MTA A AL + +E S+ T L
Sbjct: 88 GLSIKKQQIHDLQEEFSKTGLEANK-KVYIIEHADRMTANAANALLKFLEEPSSDTTAIL 146
Query: 147 ACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
S +I+ I SRC +V F L E ++ RL
Sbjct: 147 LTEQSHQILNTILSRCQVVTFRPLPTESLIRRL 179
>UNIPROTKB|Q607H8 [details] [associations]
symbol:MCA1782 "ATPase, AAA family" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0017111 EMBL:AE017282 GenomeReviews:AE017282_GR
HOGENOM:HOG000017623 KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 RefSeq:YP_114220.1
ProteinModelPortal:Q607H8 SMR:Q607H8 GeneID:3102211
KEGG:mca:MCA1782 PATRIC:22607406 Uniprot:Q607H8
Length = 435
Score = 115 (45.5 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 53/213 (24%), Positives = 91/213 (42%)
Query: 14 PWVEKYRPTKVCDIVGNLDAV--AR-LGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
P ++ RP + + +G L + R L R G + ++I GPPGTGKTT LA L
Sbjct: 8 PLADRLRPRTLDEYIGQLHLIEPGRPLYESIRRGRLHSMIFWGPPGTGKTT--LA---RL 62
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ + + ++A G+ +R + Q K G+ ++ +DE Q A
Sbjct: 63 VARHADAEFLPVSAVLS-GVKEIREALARAVQFKAA---GRRAILFVDEVHRFNKSQQDA 118
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
+E + S A N S ++ + SR + L++ ++L + + + +
Sbjct: 119 FLAHVEDGTVSFIGATTENPSFEVNSALLSRARVYVLKALTEADLLGVIDRALSDAERGL 178
Query: 191 VPEGLE-------AIIFTADGDMRQALNNLQAT 216
GL A + ADGD R+ LN L+ T
Sbjct: 179 GGRGLNMSDPVRMAYVRAADGDARRLLNLLEIT 211
Score = 39 (18.8 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 235 PHPLHVKNMVRNVLEGKFDDACSGLKQLYD 264
P PLH++N +++G D G + +D
Sbjct: 358 PVPLHLRNAPTGLMKGL--DYGKGYRYAHD 385
>UNIPROTKB|F1PFW9 [details] [associations]
symbol:CHTF18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 GeneTree:ENSGT00550000075029
OMA:TMLAYNL EMBL:AAEX03004670 Ensembl:ENSCAFT00000031175
Uniprot:F1PFW9
Length = 1140
Score = 117 (46.2 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 32/88 (36%), Positives = 46/88 (52%)
Query: 50 ILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPP 109
+L GPPG GKTT LAH ++ + +V+E+NASDDR + R I+ Q + L
Sbjct: 528 LLCGPPGLGKTT----LAH-VIARHAGYSVVEMNASDDRSPEAFRTCIEAATQMESVLGA 582
Query: 110 G-KHKVVVLDEADSMTAGAQQALRRTME 136
G K +V+DE D A L ++
Sbjct: 583 GGKPNCLVIDEIDGAPVAAINVLLNVLD 610
Score = 47 (21.6 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 175 ILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQ 214
ILS + +E + P L A+ D D+R +N LQ
Sbjct: 670 ILSSRLTQRLQEGMQADPGALAALCEKTDNDIRACINTLQ 709
>TIGR_CMR|SPO_2741 [details] [associations]
symbol:SPO_2741 "DNA polymerase III, delta prime subunit,
putative" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 SMART:SM00382
GO:GO:0000166 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0017111
KO:K02341 HOGENOM:HOG000142449 RefSeq:YP_167948.1
ProteinModelPortal:Q5LPV8 GeneID:3194106 KEGG:sil:SPO2741
PATRIC:23378901 OMA:NLDRKQT ProtClustDB:PRK07471 Uniprot:Q5LPV8
Length = 373
Score = 107 (42.7 bits), Expect = 0.0010, Sum P(2) = 0.0010
Identities = 33/104 (31%), Positives = 52/104 (50%)
Query: 110 GKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSR 169
G +VV++D AD M A AL + +E T L + S+++ I+SRC +R +
Sbjct: 144 GGRRVVIVDSADEMNTSAANALLKMLEEPPARTTLLLVSHQPSRLLPTIRSRCRTLRLTP 203
Query: 170 LSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNL 213
LS ++ S L +V +PE L A+ A G + +AL L
Sbjct: 204 LSPADMQSALEQAGAGTEV--MPEHLAAL---ASGSVGRALRLL 242
Score = 45 (20.9 bits), Expect = 0.0010, Sum P(2) = 0.0010
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 50 ILAGPPGTGKTTSILALAHELL 71
+L GP G GK T +A LL
Sbjct: 47 LLTGPEGVGKATLAWRIARFLL 68
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.396 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 331 324 0.00086 116 3 11 22 0.37 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 161
No. of states in DFA: 604 (64 KB)
Total size of DFA: 202 KB (2114 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.24u 0.14s 27.38t Elapsed: 00:00:01
Total cpu time: 27.26u 0.14s 27.40t Elapsed: 00:00:01
Start: Fri May 10 23:43:30 2013 End: Fri May 10 23:43:31 2013
WARNINGS ISSUED: 1