BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020071
(331 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225426826|ref|XP_002283246.1| PREDICTED: replication factor C subunit 2 [Vitis vinifera]
gi|297742576|emb|CBI34725.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust.
Identities = 297/328 (90%), Positives = 314/328 (95%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
+SSSS S YD+PWVEKYRPTKV DIVGN D V+RL +IARDGNMPNLIL+GPPGTGKTTS
Sbjct: 2 ASSSSMSNYDMPWVEKYRPTKVADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTS 61
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
+LALAHELLG NYREAV+ELNASDDRGIDVVRNKIKMFAQKKVTLP G HK+V+LDEADS
Sbjct: 62 VLALAHELLGANYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPSGSHKIVILDEADS 121
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT GAQQALRRTMEIYSNSTRFALACN+SSKIIEPIQSRCAIVRFSRLSD+EIL RLMVV
Sbjct: 122 MTTGAQQALRRTMEIYSNSTRFALACNISSKIIEPIQSRCAIVRFSRLSDQEILGRLMVV 181
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
V+ EKVP+VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN
Sbjct: 182 VEAEKVPFVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 241
Query: 243 MVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHM 302
MVRNVLEGKFDDAC GLKQLYDLGYSPTDIITTLFRIIKNY+MAE+LKLEFMKE GFAHM
Sbjct: 242 MVRNVLEGKFDDACYGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHM 301
Query: 303 RICDGVGSYLQLCGLLAKLSIVRETAKA 330
RICDGVGSYLQLCGLLAKL++VRETAKA
Sbjct: 302 RICDGVGSYLQLCGLLAKLAVVRETAKA 329
>gi|255537345|ref|XP_002509739.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223549638|gb|EEF51126.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 333
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 290/320 (90%), Positives = 314/320 (98%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
YD+PWVEKYRP+K+CDIVGN DAV+RL +IARDGNMPNLIL+GPPGTGKTTSILALAHEL
Sbjct: 13 YDVPWVEKYRPSKICDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 72
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LGPNY+EAV+ELNASDDRGIDVVRNKIKMFAQKKVTLPPG+HKVV+LDEADSMT+GAQQA
Sbjct: 73 LGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQA 132
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIYSNSTRFALACN SSKIIEPIQSRCA+VRFSRLSD+EIL RL++VVQ EKVPY
Sbjct: 133 LRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLIIVVQAEKVPY 192
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR+V+EG
Sbjct: 193 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRHVMEG 252
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
K+DDACSGLKQLYDLGYSPTDIITTLFRIIKNY+MAE+LKLEFMKE GFAHMRICDGVGS
Sbjct: 253 KYDDACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGS 312
Query: 311 YLQLCGLLAKLSIVRETAKA 330
YLQLCGLLAKL++VR+TA+A
Sbjct: 313 YLQLCGLLAKLALVRDTARA 332
>gi|449460473|ref|XP_004147970.1| PREDICTED: replication factor C subunit 2-like [Cucumis sativus]
gi|449494241|ref|XP_004159490.1| PREDICTED: replication factor C subunit 2-like [Cucumis sativus]
Length = 331
Score = 625 bits (1612), Expect = e-177, Method: Compositional matrix adjust.
Identities = 299/330 (90%), Positives = 318/330 (96%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
MASSS SSS YDIPWVEKYRP KV DIVGN DAV+RL +IARDGNMPNLIL+GPPGTGKT
Sbjct: 1 MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TSILALAHELLGPNY+E V+ELNASDDRGIDVVRNKIKMFAQKKVTLPPG+HKVV+LDEA
Sbjct: 61 TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT GAQQALRRTMEIYSN+TRFALACN SSKIIEPIQSRCAIVRFSRL+D+EIL RLM
Sbjct: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
VV+Q EKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQ+NVFKVCDQPHPLHV
Sbjct: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
KN+VRNVLEGKFDDAC+GL+QLYDLGYSPTDIITTLFRIIKNY+MAE+LKLEFMKE GFA
Sbjct: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300
Query: 301 HMRICDGVGSYLQLCGLLAKLSIVRETAKA 330
HMRICDGVGSYLQLCGLLAKLS+VRETAKA
Sbjct: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKA 330
>gi|224074887|ref|XP_002304476.1| predicted protein [Populus trichocarpa]
gi|222841908|gb|EEE79455.1| predicted protein [Populus trichocarpa]
Length = 330
Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust.
Identities = 293/328 (89%), Positives = 314/328 (95%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
+SSS+SS YDIPWVEKYRP KV DIVGN DAV+RL +IARDGNMPNLILAGPPGTGKTTS
Sbjct: 2 ASSSNSSNYDIPWVEKYRPNKVADIVGNQDAVSRLQVIARDGNMPNLILAGPPGTGKTTS 61
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
ILALAHELLGPN +EAV+ELNASDDRGIDVVRNKIKMFAQKKVTLPPG+HK+V+LDEADS
Sbjct: 62 ILALAHELLGPNSKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGQHKIVILDEADS 121
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT+GAQQALRRTMEIYSNSTRFALACN SSKIIEPIQSRCAIVRFSRLSD+EIL RLMVV
Sbjct: 122 MTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVV 181
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
V E+VPYVPEGLEAIIFTADGDMRQALNNLQAT+SGF FVNQENVFKVCDQPHPLHVKN
Sbjct: 182 VGAEQVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFHFVNQENVFKVCDQPHPLHVKN 241
Query: 243 MVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHM 302
MVR VLEGKFDDACSGLK LYD+GYSPTDIITTLFRIIKNY+MAE++KLEFMKE GFAHM
Sbjct: 242 MVRQVLEGKFDDACSGLKHLYDMGYSPTDIITTLFRIIKNYDMAEYMKLEFMKETGFAHM 301
Query: 303 RICDGVGSYLQLCGLLAKLSIVRETAKA 330
RICDGVGSYLQLCGLLAKL++VR+TA+A
Sbjct: 302 RICDGVGSYLQLCGLLAKLALVRDTARA 329
>gi|388504120|gb|AFK40126.1| unknown [Medicago truncatula]
Length = 333
Score = 619 bits (1595), Expect = e-175, Method: Compositional matrix adjust.
Identities = 287/324 (88%), Positives = 312/324 (96%)
Query: 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
++++YD+PWVEKYRP+KV DIVGN DAV+RL +IARDGNMPNLIL+GPPGTGKTTSILAL
Sbjct: 9 NTASYDVPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILAL 68
Query: 67 AHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG 126
AHELLGPNYREAV+ELNASDDRGIDVVRNKIKMFAQKKVTLPPG+HKVV+LDEADSMT+G
Sbjct: 69 AHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSG 128
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQQALRRTMEIYSNSTRFALACN SSKIIEPIQSRCAIVRFSRLSD+EIL RLMVVVQ E
Sbjct: 129 AQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAE 188
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
KVPYVPEGLEAIIFTADGDMRQ LNNLQAT+SGF+FVNQ NVFKVCDQPHPLHVKNMVRN
Sbjct: 189 KVPYVPEGLEAIIFTADGDMRQGLNNLQATFSGFQFVNQANVFKVCDQPHPLHVKNMVRN 248
Query: 247 VLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICD 306
V+EG FD+ACSGLKQLYDLGYSPTDIITTLFRIIK+Y+MAE+LKLEFMKE GFAHMRICD
Sbjct: 249 VIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKSYDMAEYLKLEFMKETGFAHMRICD 308
Query: 307 GVGSYLQLCGLLAKLSIVRETAKA 330
GVGSYLQ+CGLLAK ++VR+TA A
Sbjct: 309 GVGSYLQMCGLLAKFALVRDTANA 332
>gi|356514052|ref|XP_003525721.1| PREDICTED: replication factor C subunit 2-like [Glycine max]
Length = 331
Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust.
Identities = 291/324 (89%), Positives = 311/324 (95%), Gaps = 1/324 (0%)
Query: 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH 68
+AYD+PWVEKYRP+KV DIVGN DAV+RL +IARDGNMPNLIL+GPPGTGKTTSILALAH
Sbjct: 8 NAYDVPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAH 67
Query: 69 ELLG-PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGA 127
ELLG PN +EAV+ELNASDDRGIDVVRNKIKMFAQKKVTL PG+HK+V+LDEADSMT GA
Sbjct: 68 ELLGGPNCKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLTPGRHKIVILDEADSMTTGA 127
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
QQALRRTMEIYSN+TRFALACN S+KIIEPIQSRCAIVRFSRLSD+EIL RLMVVVQ EK
Sbjct: 128 QQALRRTMEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEK 187
Query: 188 VPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNV 247
VPYVPEGLEAIIFTADGDMRQALNNLQATYSGF+FVNQ NVFKVCDQPHPLHVKNMVRNV
Sbjct: 188 VPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVRNV 247
Query: 248 LEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDG 307
+EG FD+ACSGLKQLYDLGYSPTDIITTLFRIIKNY+MAE+LKLEFMKE GFAHMRICDG
Sbjct: 248 IEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDG 307
Query: 308 VGSYLQLCGLLAKLSIVRETAKAV 331
VGSYLQLCGLLAKLS+VRETAKAV
Sbjct: 308 VGSYLQLCGLLAKLSLVRETAKAV 331
>gi|297837097|ref|XP_002886430.1| hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp.
lyrata]
gi|297332271|gb|EFH62689.1| hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp.
lyrata]
Length = 334
Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust.
Identities = 288/321 (89%), Positives = 308/321 (95%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
Y+ PWVEKYRP+KV DIVGN DAV+RL +IARDGNMPNLIL+GPPGTGKTTSILALAHE
Sbjct: 13 GYNNPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHE 72
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
LLGPNY+EAV+ELNASDDRGIDVVRNKIKMFAQKKVTLPPG+HKVV+LDEADSMT+GAQQ
Sbjct: 73 LLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQ 132
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRRT+EIYSNSTRFALACN SSKIIEPIQSRCA+VRFSRLSD++IL RL+VVV+ E VP
Sbjct: 133 ALRRTIEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQQILGRLLVVVEAENVP 192
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
YVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQENVFKVCDQPHPLHVKN+VRNVLE
Sbjct: 193 YVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVKNIVRNVLE 252
Query: 250 GKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
KFDDAC GLKQLYDLGYSPTDIITTLFRIIKNY+MAE+LKLEFMKE GFAHMRICDGVG
Sbjct: 253 SKFDDACHGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVG 312
Query: 310 SYLQLCGLLAKLSIVRETAKA 330
SYLQLCGLLAKLSI RETAKA
Sbjct: 313 SYLQLCGLLAKLSIARETAKA 333
>gi|356563210|ref|XP_003549857.1| PREDICTED: replication factor C subunit 2-like [Glycine max]
Length = 332
Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust.
Identities = 297/332 (89%), Positives = 317/332 (95%), Gaps = 1/332 (0%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
M SSSSSS+AYD+PWVEKYRP+KV DIVGN DAV+RL +IARDGNMPNLIL+GPPGTGKT
Sbjct: 1 MTSSSSSSNAYDVPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60
Query: 61 TSILALAHELLG-PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDE 119
TSILALAHELLG PN +EAV+ELNASDDRGIDVVRNKIKMFAQKKVTL PG+HK+V+LDE
Sbjct: 61 TSILALAHELLGGPNCKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLTPGRHKIVILDE 120
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
ADSMT GAQQALRRTMEIYSN+TRFALACN S+KIIEPIQSRCAIVRFSRLSD+EIL RL
Sbjct: 121 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRL 180
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH 239
MVVVQ EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF+FVNQ NVFKVCDQPHPLH
Sbjct: 181 MVVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLH 240
Query: 240 VKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGF 299
VKNMV NV+EG FD+ACSGLKQLYDLGYSPTDIITTLFRIIKNY+MAE+LKLEFMKE GF
Sbjct: 241 VKNMVCNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 300
Query: 300 AHMRICDGVGSYLQLCGLLAKLSIVRETAKAV 331
AHMRICDGVGSYLQLCGLLAKLS+VRETAKAV
Sbjct: 301 AHMRICDGVGSYLQLCGLLAKLSLVRETAKAV 332
>gi|357165331|ref|XP_003580347.1| PREDICTED: replication factor C subunit 2-like [Brachypodium
distachyon]
Length = 333
Score = 608 bits (1569), Expect = e-172, Method: Compositional matrix adjust.
Identities = 281/323 (86%), Positives = 307/323 (95%)
Query: 8 SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
+ YDIPWVEKYRP++V D+VGN DAV+RL +IARDGNMPNLIL+GPPGTGKTTSILALA
Sbjct: 11 TDTYDIPWVEKYRPSRVADVVGNSDAVSRLEVIARDGNMPNLILSGPPGTGKTTSILALA 70
Query: 68 HELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGA 127
HE+LGP+YRE V+ELNASDDRG+DVVRNKIKMFAQKKVTLPPG+HK+V+LDEADSMT GA
Sbjct: 71 HEMLGPSYREGVLELNASDDRGLDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTTGA 130
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
QQALRRTMEIYSN+TRFALACN SSKIIEPIQSRCAIVRFSRLSD+EIL RLMVVV EK
Sbjct: 131 QQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVAAEK 190
Query: 188 VPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNV 247
VPYVPEGLEAIIFTADGDMRQALNNLQAT SGFRFVNQENVFKVCDQPHPLHVKNMV+NV
Sbjct: 191 VPYVPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPHPLHVKNMVKNV 250
Query: 248 LEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDG 307
L+GKFD+ACSGLKQLYDLGYSPTDIITTLFR++KNY+MAE+LKLE +KE GFAHMRICDG
Sbjct: 251 LDGKFDEACSGLKQLYDLGYSPTDIITTLFRVVKNYDMAEYLKLELLKETGFAHMRICDG 310
Query: 308 VGSYLQLCGLLAKLSIVRETAKA 330
VGS+LQL GLLAK +IVRETAKA
Sbjct: 311 VGSFLQLSGLLAKFAIVRETAKA 333
>gi|115459988|ref|NP_001053594.1| Os04g0569000 [Oryza sativa Japonica Group]
gi|38344372|emb|CAE02250.2| OSJNBb0032E06.6 [Oryza sativa Japonica Group]
gi|113565165|dbj|BAF15508.1| Os04g0569000 [Oryza sativa Japonica Group]
Length = 335
Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust.
Identities = 286/332 (86%), Positives = 312/332 (93%), Gaps = 3/332 (0%)
Query: 2 ASSSSS---SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTG 58
ASSSS+ + AYDIPWVEKYRPT+V D+ GN DAVARL IARDGNMPNLIL+GPPGTG
Sbjct: 3 ASSSSAPDLADAYDIPWVEKYRPTRVADVGGNSDAVARLQDIARDGNMPNLILSGPPGTG 62
Query: 59 KTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLD 118
KTTSIL+LAHELLGP+YREAV+ELNASDDRG+DVVRNKIKMFAQKKVTL PG+HK+V+LD
Sbjct: 63 KTTSILSLAHELLGPSYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILD 122
Query: 119 EADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSR 178
EADSMT+GAQQALRRTMEIYSN+TRFALACN SSKIIEPIQSRCAIVRFSRLSD+EIL R
Sbjct: 123 EADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGR 182
Query: 179 LMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPL 238
LM+VV EKVPYVPEGLEAIIFTADGDMRQALNNLQAT SGFRFVNQENVFKVCDQPHPL
Sbjct: 183 LMIVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPHPL 242
Query: 239 HVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAG 298
HVKNMV+NVL+GKFD+ACS LKQLYDLGYSPTDIITTLFR+IKNY+MAE+LKLE +KE G
Sbjct: 243 HVKNMVKNVLDGKFDEACSALKQLYDLGYSPTDIITTLFRVIKNYDMAEYLKLELLKETG 302
Query: 299 FAHMRICDGVGSYLQLCGLLAKLSIVRETAKA 330
FAHMRICDGVGS+LQL GLLAK ++VRETAKA
Sbjct: 303 FAHMRICDGVGSFLQLSGLLAKFALVRETAKA 334
>gi|15991286|dbj|BAB69675.1| replication factor C 40kDa subunit [Oryza sativa Japonica Group]
gi|116310007|emb|CAH67033.1| OSIGBa0139P06.6 [Oryza sativa Indica Group]
gi|218195393|gb|EEC77820.1| hypothetical protein OsI_17026 [Oryza sativa Indica Group]
Length = 335
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 281/320 (87%), Positives = 306/320 (95%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
YDIPWVEKYRPT+V D+VGN DAVARL +IARDGNMPNLIL+GPPGTGKTTSIL+LAHEL
Sbjct: 15 YDIPWVEKYRPTRVADVVGNSDAVARLQVIARDGNMPNLILSGPPGTGKTTSILSLAHEL 74
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LGP+YREAV+ELNASDDRG+DVVRNKIKMFAQKKVTL PG+HK+V+LDEADSMT+GAQQA
Sbjct: 75 LGPSYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILDEADSMTSGAQQA 134
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIYSN+TRFALACN SSKIIEPIQSRCAIVRFSRLSD+EIL RLM+VV EKVPY
Sbjct: 135 LRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAEKVPY 194
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
VPEGLEAIIFTADGDMRQALNNLQAT SGFRFVNQENVFKVCDQPHPLHVKNMV+NVL+G
Sbjct: 195 VPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPHPLHVKNMVKNVLDG 254
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
KFD+ACS LKQLYDLGYSPTDIITTLFR+IKNY+MAE+LKLE +KE GFAHMRICDGVGS
Sbjct: 255 KFDEACSALKQLYDLGYSPTDIITTLFRVIKNYDMAEYLKLELLKETGFAHMRICDGVGS 314
Query: 311 YLQLCGLLAKLSIVRETAKA 330
+LQL GLLAK ++VRETAKA
Sbjct: 315 FLQLSGLLAKFALVRETAKA 334
>gi|15221697|ref|NP_176504.1| replication factor C 2 [Arabidopsis thaliana]
gi|12323266|gb|AAG51618.1|AC010795_22 replication factor, putative; 74998-73295 [Arabidopsis thaliana]
gi|182623790|gb|ACB88833.1| At1g63160 [Arabidopsis thaliana]
gi|332195942|gb|AEE34063.1| replication factor C 2 [Arabidopsis thaliana]
Length = 333
Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust.
Identities = 286/321 (89%), Positives = 306/321 (95%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
Y+ PWVEKYRP+KV DIVGN DAV+RL +IARDGNMPNLIL+GPPGTGKTTSILALAHE
Sbjct: 12 GYNEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHE 71
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
LLG NY+EAV+ELNASDDRGIDVVRNKIKMFAQKKVTLPPG+HKVV+LDEADSMT+GAQQ
Sbjct: 72 LLGTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQ 131
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRRT+EIYSNSTRFALACN S+KIIEPIQSRCA+VRFSRLSD++IL RL+VVV EKVP
Sbjct: 132 ALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLLVVVAAEKVP 191
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
YVPEGLEAIIFTADGDMRQALNNLQAT+SGF FVNQENVFKVCDQPHPLHVKN+VRNVLE
Sbjct: 192 YVPEGLEAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPLHVKNIVRNVLE 251
Query: 250 GKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
KFD AC GLKQLYDLGYSPTDIITTLFRIIKNY+MAE+LKLEFMKE GFAHMRICDGVG
Sbjct: 252 SKFDIACDGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVG 311
Query: 310 SYLQLCGLLAKLSIVRETAKA 330
SYLQLCGLLAKLSIVRETAKA
Sbjct: 312 SYLQLCGLLAKLSIVRETAKA 332
>gi|326512276|dbj|BAJ96119.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 335
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 280/320 (87%), Positives = 305/320 (95%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
YDIPWVEKYRP++V D+VGN DAV+RL +IARDGNMPNLIL+GPPGTGKTTSILALAHE+
Sbjct: 16 YDIPWVEKYRPSRVADVVGNADAVSRLEVIARDGNMPNLILSGPPGTGKTTSILALAHEM 75
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LGP+YRE V+ELNASDDRG+DVVRNKIKMFAQKKVTLPPG+HK+V+LDEADSMT GAQQA
Sbjct: 76 LGPSYREGVLELNASDDRGLDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTTGAQQA 135
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIYSN+TRFALACN SSKIIEPIQSRCAIVRFSRLSD+EIL RLMVVV EKVPY
Sbjct: 136 LRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVAAEKVPY 195
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
VPEGLEAIIFTADGDMRQALNNLQAT SGFRFVNQENVFKVCDQPHPLHVK+MV+NVL+G
Sbjct: 196 VPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPHPLHVKSMVKNVLDG 255
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
KFD+ACSGLKQLYDLGYSPTDIITTLFR+IKNY+MAE LKLE +KE GFAHMRICDGVGS
Sbjct: 256 KFDEACSGLKQLYDLGYSPTDIITTLFRVIKNYDMAEFLKLELLKETGFAHMRICDGVGS 315
Query: 311 YLQLCGLLAKLSIVRETAKA 330
+LQL GLLAK ++VRETAKA
Sbjct: 316 FLQLSGLLAKFALVRETAKA 335
>gi|194706108|gb|ACF87138.1| unknown [Zea mays]
Length = 331
Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust.
Identities = 280/330 (84%), Positives = 312/330 (94%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
MA ++ + AYDIPWVEKYRP++V D+VGN DAVARL +IARDGNMPNLIL+GPPGTGKT
Sbjct: 1 MAPAAPDADAYDIPWVEKYRPSRVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKT 60
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TSILALAHELLGP+YR+AV+ELNASDDRG+DVVRNKIKMFAQKKVTL PG+HK+V+LDEA
Sbjct: 61 TSILALAHELLGPSYRDAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILDEA 120
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT+GAQQALRRTMEIYSN+TRFALACN SSKIIEPIQSRCAIVRFSRLSD+EIL RLM
Sbjct: 121 DSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLM 180
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+VV EKVPY PEGLEAIIFTADGDMRQALNNLQAT+SGFRF+NQENVFKVCDQPHPLHV
Sbjct: 181 IVVAAEKVPYAPEGLEAIIFTADGDMRQALNNLQATFSGFRFINQENVFKVCDQPHPLHV 240
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
KNMV+NVL+GKFD+ACS LKQLYDLGYSPTDIITTLFR++KNY+MAE+LKLE +KE GFA
Sbjct: 241 KNMVKNVLDGKFDEACSALKQLYDLGYSPTDIITTLFRVVKNYDMAEYLKLEMLKETGFA 300
Query: 301 HMRICDGVGSYLQLCGLLAKLSIVRETAKA 330
HMRICDGVGS+LQL GLLAK ++VRETAKA
Sbjct: 301 HMRICDGVGSFLQLSGLLAKFALVRETAKA 330
>gi|242074030|ref|XP_002446951.1| hypothetical protein SORBIDRAFT_06g025740 [Sorghum bicolor]
gi|241938134|gb|EES11279.1| hypothetical protein SORBIDRAFT_06g025740 [Sorghum bicolor]
Length = 333
Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust.
Identities = 277/320 (86%), Positives = 303/320 (94%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
YDIPWVEKYRP +V D+VGN DAVARL +IARDGNMPNLIL+GPPGTGKTTSILALAHEL
Sbjct: 13 YDIPWVEKYRPNRVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHEL 72
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LGP+YREAV+ELNASDDRG+DVVRNKIKMFAQKKVTL PG+HK+V+LDEADSMT GAQQA
Sbjct: 73 LGPSYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILDEADSMTTGAQQA 132
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIYSN+TRFALACN SSKIIEPIQSRCAIVRFSRLSD+EIL RLM+VV EKVPY
Sbjct: 133 LRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAEKVPY 192
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
VPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQENVFKVCDQPHPLHVKNMV+NVL+G
Sbjct: 193 VPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVKNMVKNVLDG 252
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
KFD+AC+ LKQLYDLGYSPTDIITTLFR++KNY+M E+LKLE +KE GFAHMRICDGVGS
Sbjct: 253 KFDEACAALKQLYDLGYSPTDIITTLFRVVKNYDMPEYLKLEMLKETGFAHMRICDGVGS 312
Query: 311 YLQLCGLLAKLSIVRETAKA 330
+LQL GLLAK ++VRE AKA
Sbjct: 313 FLQLSGLLAKFALVREIAKA 332
>gi|226493143|ref|NP_001149058.1| LOC100282678 [Zea mays]
gi|195624372|gb|ACG34016.1| replication factor C subunit 4 [Zea mays]
Length = 331
Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust.
Identities = 274/318 (86%), Positives = 303/318 (95%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
IPWVEKYRP++V D+VGN DAVARL +IARDGNMPNLIL+GPPGTGKTTSILALAHELLG
Sbjct: 13 IPWVEKYRPSRVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLG 72
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
P+YR+AV+ELNASDDRG+DVVRNKIKMFAQKKVTL PG+HK+V+LDEADSMT+GAQQALR
Sbjct: 73 PSYRDAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILDEADSMTSGAQQALR 132
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTMEIYSN+TRFALACN SSKIIEPIQSRCAIVRFSRLSD+EIL RLM+VV EKVPY P
Sbjct: 133 RTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAEKVPYAP 192
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
EGLEAIIFTADGDMRQALNNLQAT+SGFRF+NQENVFKVCDQPHPLHVKNMV+NVL+GKF
Sbjct: 193 EGLEAIIFTADGDMRQALNNLQATFSGFRFINQENVFKVCDQPHPLHVKNMVKNVLDGKF 252
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
D+ CS LKQLYDLGYSPTDIITTLFR++KNY+MAE+LKLE +KE GFAHMRICDGVGS+L
Sbjct: 253 DEPCSALKQLYDLGYSPTDIITTLFRVVKNYDMAEYLKLEMLKETGFAHMRICDGVGSFL 312
Query: 313 QLCGLLAKLSIVRETAKA 330
QL GLLAK ++VRETAKA
Sbjct: 313 QLSGLLAKFALVRETAKA 330
>gi|294461526|gb|ADE76324.1| unknown [Picea sitchensis]
gi|294463669|gb|ADE77361.1| unknown [Picea sitchensis]
Length = 335
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 273/320 (85%), Positives = 300/320 (93%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
YD+PWVEKYRP+KV DIVGN DA++RL +IARDGNMPNLILAGPPGTGKTTSILALAHEL
Sbjct: 15 YDLPWVEKYRPSKVSDIVGNQDALSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHEL 74
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LG NY+E V+ELNASDDRGIDVVRNKIKMFAQKKVTLPPG+HK+++LDEADSMT GAQQA
Sbjct: 75 LGSNYKEGVIELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTGGAQQA 134
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEI+SNSTRFALACN S+KIIEPIQSRCAIVRFS+LSD+EIL RLM VV+ EKV Y
Sbjct: 135 LRRTMEIFSNSTRFALACNTSAKIIEPIQSRCAIVRFSKLSDQEILGRLMRVVEAEKVAY 194
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
VPEGLEAIIFTADGDMRQALNNLQATYSGF+FVNQENVFKVCDQPHPLHVK+MV+NVLEG
Sbjct: 195 VPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQENVFKVCDQPHPLHVKSMVQNVLEG 254
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
FD+ACS LK LYDLGYS TDIITTLFR+IKNY+M E+LKLEF++E GFAHMRI DGVGS
Sbjct: 255 NFDEACSRLKNLYDLGYSATDIITTLFRVIKNYDMPEYLKLEFIRETGFAHMRISDGVGS 314
Query: 311 YLQLCGLLAKLSIVRETAKA 330
LQL GLLAKLSIVR+T+KA
Sbjct: 315 LLQLSGLLAKLSIVRDTSKA 334
>gi|167999374|ref|XP_001752392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696292|gb|EDQ82631.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 333
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 258/328 (78%), Positives = 295/328 (89%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
+++S + YD+PWVEKYRP +V DIVGN D VARL +IA+ GNMPNLI +GPPGTGKTTS
Sbjct: 6 AATSLAKDYDLPWVEKYRPHRVADIVGNQDVVARLQVIAQGGNMPNLIFSGPPGTGKTTS 65
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
ILALAHELLGPN++EAV+ELNASDDRGIDVVRNKIKMFAQKKVTLPPG+HKVV+LDEADS
Sbjct: 66 ILALAHELLGPNFKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVLLDEADS 125
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MTAGAQQALRRTMEIYSN+TRFALACN+SSKIIEPIQSRCAIVRFSRLSD EIL RL+ V
Sbjct: 126 MTAGAQQALRRTMEIYSNTTRFALACNLSSKIIEPIQSRCAIVRFSRLSDSEILDRLLRV 185
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
V+ EKVPYVPEGLEA++FTADGDMRQALNNLQAT+SGF+FVNQ+NVF+VCDQPHPL +
Sbjct: 186 VEAEKVPYVPEGLEAVVFTADGDMRQALNNLQATFSGFQFVNQDNVFRVCDQPHPLLAQQ 245
Query: 243 MVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHM 302
++++ + G DDA +GLKQLYD+GYS TDIITTLFR++KNYEM E LKLEF++E GFAHM
Sbjct: 246 IIKHCIAGNIDDAYTGLKQLYDMGYSATDIITTLFRVVKNYEMVEFLKLEFIREVGFAHM 305
Query: 303 RICDGVGSYLQLCGLLAKLSIVRETAKA 330
RI DGVG+ LQL GLLAKL VRE KA
Sbjct: 306 RIADGVGTLLQLSGLLAKLCKVRERCKA 333
>gi|222629391|gb|EEE61523.1| hypothetical protein OsJ_15825 [Oryza sativa Japonica Group]
Length = 306
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 257/320 (80%), Positives = 279/320 (87%), Gaps = 29/320 (9%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
YDIPWVEKYRP + GPPGTGKTTSIL+LAHEL
Sbjct: 15 YDIPWVEKYRPNR-----------------------------GPPGTGKTTSILSLAHEL 45
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LGP+YREAV+ELNASDDRG+DVVRNKIKMFAQKKVTL PG+HK+V+LDEADSMT+GAQQA
Sbjct: 46 LGPSYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILDEADSMTSGAQQA 105
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIYSN+TRFALACN SSKIIEPIQSRCAIVRFSRLSD+EIL RLM+VV EKVPY
Sbjct: 106 LRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAEKVPY 165
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
VPEGLEAIIFTADGDMRQALNNLQAT SGFRFVNQENVFKVCDQPHPLHVKNMV+NVL+G
Sbjct: 166 VPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPHPLHVKNMVKNVLDG 225
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
KFD+ACS LKQLYDLGYSPTDIITTLFR+IKNY+MAE+LKLE +KE GFAHMRICDGVGS
Sbjct: 226 KFDEACSALKQLYDLGYSPTDIITTLFRVIKNYDMAEYLKLELLKETGFAHMRICDGVGS 285
Query: 311 YLQLCGLLAKLSIVRETAKA 330
+LQL GLLAK ++VRETAKA
Sbjct: 286 FLQLSGLLAKFALVRETAKA 305
>gi|302770687|ref|XP_002968762.1| hypothetical protein SELMODRAFT_90486 [Selaginella moellendorffii]
gi|300163267|gb|EFJ29878.1| hypothetical protein SELMODRAFT_90486 [Selaginella moellendorffii]
Length = 326
Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust.
Identities = 245/325 (75%), Positives = 288/325 (88%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
+S YD+PWVEKYRP K+ D+VGN DA+ RL +IARDGNMPNLI +GPPG GKTT I+A
Sbjct: 2 ASREEYDLPWVEKYRPQKLADVVGNQDAIGRLQVIARDGNMPNLIFSGPPGIGKTTCIMA 61
Query: 66 LAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
+AHE+LG +EAV+ELNASDDRGIDVVRNKIKMFAQKK+TLP G+HKVV+LDEADSMT+
Sbjct: 62 MAHEMLGALAKEAVLELNASDDRGIDVVRNKIKMFAQKKLTLPRGRHKVVILDEADSMTS 121
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
GAQQALRRTMEIYS+STRF LACN+SS+IIEPIQSRCAIVRF+RLS+++IL+RL+ V
Sbjct: 122 GAQQALRRTMEIYSSSTRFGLACNLSSQIIEPIQSRCAIVRFTRLSEQDILARLLKVAAA 181
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
EKVPYVPEGLEA++FTADGDMRQALNNLQATYSGF+FVN+ENVFKVCDQPHPL V M++
Sbjct: 182 EKVPYVPEGLEAVVFTADGDMRQALNNLQATYSGFQFVNRENVFKVCDQPHPLLVSTMIQ 241
Query: 246 NVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
N L GK D+A G+KQLYDLGYS +DIITTLFR++KN++M E LKLE++KE GFAHMRI
Sbjct: 242 NTLAGKIDEAYLGMKQLYDLGYSASDIITTLFRVVKNFDMPEFLKLEYIKEVGFAHMRIA 301
Query: 306 DGVGSYLQLCGLLAKLSIVRETAKA 330
+GVGS LQL GLLAKL ++RE AKA
Sbjct: 302 EGVGSLLQLTGLLAKLCLLREKAKA 326
>gi|307110140|gb|EFN58376.1| hypothetical protein CHLNCDRAFT_59565 [Chlorella variabilis]
Length = 340
Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust.
Identities = 226/321 (70%), Positives = 281/321 (87%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A + ++ + Y +PWVEKYRPT++ DIVGN++AV+RL IIA +GNMPN+ILAGPPGTGKTT
Sbjct: 11 AVAPAAKAGYPLPWVEKYRPTRIKDIVGNVEAVSRLQIIAEEGNMPNIILAGPPGTGKTT 70
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LAHELLGPN+REAV+ELNASDDRGIDVVRNKIKMFAQ+KVTLP G+HK+V+LDEAD
Sbjct: 71 SILCLAHELLGPNFREAVLELNASDDRGIDVVRNKIKMFAQQKVTLPLGRHKIVILDEAD 130
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT+GAQQALRRTMEIYS++TRFALACN SSKIIEPIQSRCAIVR+S+LSD+E+L RL+
Sbjct: 131 SMTSGAQQALRRTMEIYSSTTRFALACNQSSKIIEPIQSRCAIVRYSKLSDKELLQRLLH 190
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
V QEE V + P+GLEA++FTADGDMRQALNN+QAT +GF V+Q++VF+VCDQPHP+ V
Sbjct: 191 VCQEEGVAHTPDGLEAVVFTADGDMRQALNNVQATANGFGLVSQDHVFRVCDQPHPVLVS 250
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFA 300
++VR+ L+ + DDA GL+ L D+GYS +DIIT LFR+++N+ M E+LKLE++K+ GF
Sbjct: 251 SVVRHCLDARIDDAYEGLRALCDMGYSASDIITILFRVVRNFTGMNEYLKLEYIKQIGFC 310
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMR+ DGV S LQL GLLA+L
Sbjct: 311 HMRVGDGVNSRLQLSGLLAEL 331
>gi|302851817|ref|XP_002957431.1| DNA replication factor C complex subunit 2 [Volvox carteri f.
nagariensis]
gi|300257235|gb|EFJ41486.1| DNA replication factor C complex subunit 2 [Volvox carteri f.
nagariensis]
Length = 335
Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust.
Identities = 226/316 (71%), Positives = 273/316 (86%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
++ +++PW+EKYRP + +IVGN++AVARL +IA +GNMPN+ILAGPPGTGKTTSIL
Sbjct: 12 NTRGGFELPWLEKYRPQYIHEIVGNMEAVARLQVIAEEGNMPNVILAGPPGTGKTTSILC 71
Query: 66 LAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
LAH+LLGP Y+EAV+ELNASDDRGIDVVRNKIKMFAQKKVTLPPG+HK+V+LDEADSMTA
Sbjct: 72 LAHQLLGPTYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTA 131
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
GAQQALRRTMEIYSN+TRFALACN SSKIIEPIQSRCAIVR+SR+SD +ILSRL +V ++
Sbjct: 132 GAQQALRRTMEIYSNTTRFALACNQSSKIIEPIQSRCAIVRYSRISDVDILSRLRLVCEK 191
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E V Y EG+EA+IFTADGDMRQALNNLQAT+SGF F++QENVFKVCDQPHP V +++
Sbjct: 192 EGVTYNDEGMEALIFTADGDMRQALNNLQATHSGFGFISQENVFKVCDQPHPKLVMSIIE 251
Query: 246 NVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
N + D A +GLK L DLGYS DIITT+FR+++N ++ E LKLE+++E GF HMRI
Sbjct: 252 NCSKADLDAAYAGLKGLVDLGYSSHDIITTVFRVVRNADIPEFLKLEYLREVGFCHMRIA 311
Query: 306 DGVGSYLQLCGLLAKL 321
+GV S LQL G+LAKL
Sbjct: 312 EGVNSRLQLSGMLAKL 327
>gi|303271997|ref|XP_003055360.1| replication factor c, subunit 2 [Micromonas pusilla CCMP1545]
gi|226463334|gb|EEH60612.1| replication factor c, subunit 2 [Micromonas pusilla CCMP1545]
Length = 335
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/333 (69%), Positives = 276/333 (82%), Gaps = 5/333 (1%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
MA+++S +S +PWVEKYRPTK+ +IVGN DAV RL +A GN+PNLI +GPPG GKT
Sbjct: 1 MATAASKNST--LPWVEKYRPTKIDEIVGNADAVERLAAMAATGNVPNLIFSGPPGIGKT 58
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TSIL LAH LLGP Y++AV+ELNASDDRGIDVVRNKIKMFAQKKVTLPPG+HK+V+LDEA
Sbjct: 59 TSILCLAHTLLGPAYKDAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVLLDEA 118
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT+ AQQA+RRTMEIYSN+TRFALACN S KIIEPIQSRCAIVRF+RLSD+E+L R+M
Sbjct: 119 DSMTSAAQQAMRRTMEIYSNTTRFALACNASEKIIEPIQSRCAIVRFTRLSDQEVLERVM 178
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
VV++E+VPYVP+GLEA++FTADGDMRQALNNLQAT+SGF +VNQENVFKVCDQPHP +
Sbjct: 179 KVVEKEEVPYVPDGLEAVVFTADGDMRQALNNLQATHSGFGYVNQENVFKVCDQPHPQVI 238
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE---MAEHLKLEFMKEA 297
+M+ + L G DDA +K LY G+S DII T++R+ KN+ M E +KLEF++E
Sbjct: 239 SDMLTHCLRGNVDDAYDRIKFLYAAGFSAMDIIGTVYRVTKNFNSEAMPEFVKLEFIREI 298
Query: 298 GFAHMRICDGVGSYLQLCGLLAKLSIVRETAKA 330
GF HMR+ DGV S LQ+ GL AKL V E AKA
Sbjct: 299 GFMHMRVGDGVNSLLQMAGLCAKLCKVVECAKA 331
>gi|159484076|ref|XP_001700086.1| DNA replication factor C complex subunit 2 [Chlamydomonas
reinhardtii]
gi|158272582|gb|EDO98380.1| DNA replication factor C complex subunit 2 [Chlamydomonas
reinhardtii]
Length = 340
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 220/317 (69%), Positives = 273/317 (86%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
+++ Y++PW+EKYRP + +IVGN +AVARL +IA +GNMPN+IL+GPPGTGKTTSIL
Sbjct: 15 TATKGGYELPWLEKYRPQFINEIVGNTEAVARLQVIAEEGNMPNVILSGPPGTGKTTSIL 74
Query: 65 ALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
LAH+LLGPNY+EAV+ELNASDDRGIDVVRNKIKMFAQKKVTLPPG+HK+V+LDEADSMT
Sbjct: 75 CLAHQLLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT 134
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AGAQQALRRTMEIYS +TRFALACN+SSKIIEPIQSRCAIVR++R+ DE+IL+R+ +V +
Sbjct: 135 AGAQQALRRTMEIYSGTTRFALACNMSSKIIEPIQSRCAIVRYTRIPDEDILARMRLVAE 194
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
+E V Y G+EA+IFTADGDMRQALNN+QAT+SGF F++QENVFKVCDQPHP V ++
Sbjct: 195 KEGVTYNDAGMEAVIFTADGDMRQALNNMQATHSGFGFISQENVFKVCDQPHPKLVMGII 254
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRI 304
G D A +G+K+L D+GYSP DIITT+FR+++N ++ E LKLE+++E GF HMR+
Sbjct: 255 AKCKAGDLDAAYAGMKELQDMGYSPMDIITTVFRVVRNADIPEFLKLEYLREIGFCHMRV 314
Query: 305 CDGVGSYLQLCGLLAKL 321
+GV S LQL GLLAKL
Sbjct: 315 SEGVNSRLQLSGLLAKL 331
>gi|384248690|gb|EIE22173.1| DNA replication factor C complex subunit 2 [Coccomyxa
subellipsoidea C-169]
Length = 366
Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/323 (70%), Positives = 266/323 (82%), Gaps = 3/323 (0%)
Query: 2 ASSSSSSSAYD--IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
A++ + +S D IPWVEK+RP V DIVGN DAV RL +I+ +GNMPN+ILAGPPGTGK
Sbjct: 30 ATNDTDTSKKDSGIPWVEKFRPLYVKDIVGNTDAVDRLQVISEEGNMPNIILAGPPGTGK 89
Query: 60 TTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDE 119
TTSIL LA LLG NY+E V+ELNASDDRGIDVVRNKIKMFAQKKVTLPPG+HKVV+LDE
Sbjct: 90 TTSILCLARALLGQNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 149
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
ADSMT GAQQALRRTMEIYSN+TRFALACN SSKIIEPIQSRCAIVR+++LSD+E+L RL
Sbjct: 150 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRYTKLSDKEVLERL 209
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH 239
+VV + E VPYV EGL A+IFTADGDMRQALNNLQATY GF + E+VFKVCDQPHPL
Sbjct: 210 LVVCRSESVPYVDEGLGAVIFTADGDMRQALNNLQATYYGFGMITPEHVFKVCDQPHPLL 269
Query: 240 VKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKN-YEMAEHLKLEFMKEAG 298
+ +V+N D A G+K++ D+GYS DII TLFR++KN ++ E LKLEF++E G
Sbjct: 270 ISEIVKNCTAANIDGAYDGMKKICDMGYSSMDIIQTLFRVVKNDPKLPEFLKLEFIREVG 329
Query: 299 FAHMRICDGVGSYLQLCGLLAKL 321
F HMRI DGV S LQL GLLAKL
Sbjct: 330 FCHMRIEDGVNSRLQLSGLLAKL 352
>gi|255070803|ref|XP_002507483.1| replication factor c, subunit 2 [Micromonas sp. RCC299]
gi|226522758|gb|ACO68741.1| replication factor c, subunit 2 [Micromonas sp. RCC299]
Length = 334
Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust.
Identities = 221/328 (67%), Positives = 267/328 (81%), Gaps = 3/328 (0%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
+ + + +PWVEKYRPTK+ DIVGN DAV RL IA GNMPNLI GPPG GKTTS+L
Sbjct: 2 NGAQAVASLPWVEKYRPTKIDDIVGNKDAVDRLTAIASTGNMPNLIFTGPPGIGKTTSVL 61
Query: 65 ALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
LAH LLGP+Y++AV+ELNASDDRGID VRNKIKMFAQKKVTLPPG+HK+++LDEADSMT
Sbjct: 62 CLAHTLLGPSYKDAVLELNASDDRGIDAVRNKIKMFAQKKVTLPPGRHKIILLDEADSMT 121
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
+ AQQALRRTME+YS++TRFALACN S KIIEPIQSRCAIVRF+RLSD+E+L R++ VV+
Sbjct: 122 SAAQQALRRTMELYSSTTRFALACNASEKIIEPIQSRCAIVRFTRLSDQEVLERIVKVVE 181
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
E+VPYVP+GLEA++FTADGDMRQALNN+QAT+SGF FVNQENVFKVCDQPHP V + V
Sbjct: 182 REEVPYVPDGLEAVVFTADGDMRQALNNVQATHSGFGFVNQENVFKVCDQPHPQIVVDCV 241
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE---MAEHLKLEFMKEAGFAH 301
L G D A +K L+D G+S D+I T++R++KN++ M E +KLE ++E GF H
Sbjct: 242 ACCLRGDVDHAHDKMKSLHDAGFSAADVIGTVYRVVKNFDAESMPEFVKLEMIREVGFTH 301
Query: 302 MRICDGVGSYLQLCGLLAKLSIVRETAK 329
MRI DGV S LQL G+ AK+ V E AK
Sbjct: 302 MRIGDGVNSLLQLGGMCAKMCQVVERAK 329
>gi|410984622|ref|XP_003998626.1| PREDICTED: replication factor C subunit 2 isoform 1 [Felis catus]
Length = 352
Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust.
Identities = 212/318 (66%), Positives = 269/318 (84%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
++ S+S Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKTTSI
Sbjct: 25 TAGSASHYELPWVEKYRPVKLSEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSI 84
Query: 64 LALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM 123
L LA LLGP +++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSM
Sbjct: 85 LCLARALLGPAFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIMILDEADSM 144
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++LSD ++L+RLM V+
Sbjct: 145 TDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLMTVL 204
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
++EKV Y +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL VK M
Sbjct: 205 EQEKVQYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEM 264
Query: 244 VRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
+++ + D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+ HM+
Sbjct: 265 IQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMK 324
Query: 304 ICDGVGSYLQLCGLLAKL 321
I +GV S LQ+ GLLA+L
Sbjct: 325 IAEGVNSLLQMAGLLARL 342
>gi|348568402|ref|XP_003469987.1| PREDICTED: replication factor C subunit 2-like [Cavia porcellus]
Length = 352
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 212/320 (66%), Positives = 269/320 (84%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
+ +S S+S Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKTT
Sbjct: 23 SKASGSASHYELPWVEKYRPIKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTT 82
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA LLGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEAD
Sbjct: 83 SILCLARALLGPAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPRGRHKIIILDEAD 142
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D ++L+RL+
Sbjct: 143 SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLLS 202
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
V+++E VPY +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL VK
Sbjct: 203 VIEKEAVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVK 262
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAH 301
M+++ + DDA L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+ H
Sbjct: 263 EMIQHCVSANIDDAYKILAHLWHLGYSPEDIIGNVFRVCKTFQMAEYLKLEFIKEIGYTH 322
Query: 302 MRICDGVGSYLQLCGLLAKL 321
MR+ +GV S LQ+ GLLA+L
Sbjct: 323 MRVAEGVNSLLQMAGLLARL 342
>gi|45382983|ref|NP_990861.1| replication factor C subunit 2 [Gallus gallus]
gi|1703053|sp|P53033.1|RFC2_CHICK RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 40 kDa subunit; Short=A1 40 kDa
subunit; AltName: Full=Activator 1 subunit 2; AltName:
Full=Replication factor C 40 kDa subunit; Short=RF-C 40
kDa subunit; Short=RFC40
gi|527669|gb|AAA20552.1| replication factor C/activator 1 subunit [Gallus gallus]
Length = 359
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 209/321 (65%), Positives = 269/321 (83%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+ S+ ++S Y++PWVEKYRP K+C++VGN D V+RL + A++GN+PN+I+AGPPGTGKT
Sbjct: 29 LGSAPAASGHYELPWVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKT 88
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TSIL LA LLGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEA
Sbjct: 89 TSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEA 148
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RL+
Sbjct: 149 DSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLL 208
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+V++E VPY +GLEAIIFTA GDMRQALNNLQ+TYSGF F+N ENVFKVCD+PHPL V
Sbjct: 209 KIVEKEDVPYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLV 268
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
K M+++ + D+A L L+ LGYSP D+I +FR+ K ++M E+LKLEF+KE G+
Sbjct: 269 KEMIQHCINANIDEAYKILAHLWRLGYSPEDVIGNIFRVCKTFQMPEYLKLEFIKEIGYT 328
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HM+I +GV S LQ+ GLLA+L
Sbjct: 329 HMKIAEGVNSLLQMAGLLARL 349
>gi|301769425|ref|XP_002920130.1| PREDICTED: replication factor C subunit 2-like isoform 1
[Ailuropoda melanoleuca]
Length = 352
Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust.
Identities = 210/315 (66%), Positives = 267/315 (84%)
Query: 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
S+ Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKTTSIL L
Sbjct: 28 SAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCL 87
Query: 67 AHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG 126
A LLGP +++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT G
Sbjct: 88 ARALLGPAFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDG 147
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++LSD ++L+RL+ V+++E
Sbjct: 148 AQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQE 207
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
KVPY +GLEA+IFTA GDMRQALNN+Q+T+SGF F+N ENVFKVCD+PHPL VK MV++
Sbjct: 208 KVPYTDDGLEAVIFTAQGDMRQALNNVQSTFSGFGFINSENVFKVCDEPHPLLVKEMVQH 267
Query: 247 VLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICD 306
+ D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+ HM+I +
Sbjct: 268 CVNANVDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAE 327
Query: 307 GVGSYLQLCGLLAKL 321
GV S LQ+ GLLA+L
Sbjct: 328 GVNSLLQMAGLLARL 342
>gi|384475811|ref|NP_001245051.1| replication factor C subunit 2 [Macaca mulatta]
gi|402863243|ref|XP_003895940.1| PREDICTED: replication factor C subunit 2 isoform 1 [Papio anubis]
gi|355560573|gb|EHH17259.1| hypothetical protein EGK_13612 [Macaca mulatta]
gi|355761341|gb|EHH61789.1| hypothetical protein EGM_19875 [Macaca fascicularis]
gi|383420507|gb|AFH33467.1| replication factor C subunit 2 isoform 1 [Macaca mulatta]
gi|384948612|gb|AFI37911.1| replication factor C subunit 2 isoform 1 [Macaca mulatta]
gi|387542032|gb|AFJ71643.1| replication factor C subunit 2 isoform 1 [Macaca mulatta]
Length = 352
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 211/320 (65%), Positives = 268/320 (83%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
+ + S+ Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKTT
Sbjct: 23 SKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTT 82
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA LLGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEAD
Sbjct: 83 SILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEAD 142
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RLM
Sbjct: 143 SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLMN 202
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
V+++E+VPY +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL VK
Sbjct: 203 VIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVK 262
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAH 301
M+++ + D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+ H
Sbjct: 263 EMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTH 322
Query: 302 MRICDGVGSYLQLCGLLAKL 321
M+I +GV S LQ+ GLLA+L
Sbjct: 323 MKIAEGVNSLLQMAGLLARL 342
>gi|326931171|ref|XP_003211707.1| PREDICTED: replication factor C subunit 2-like [Meleagris
gallopavo]
Length = 360
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 208/321 (64%), Positives = 268/321 (83%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+ S+ ++ Y++PWVEKYRP K+C++VGN D V+RL + A++GN+PN+I+AGPPGTGKT
Sbjct: 30 LGSAPAAGGHYELPWVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKT 89
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TSIL LA LLGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEA
Sbjct: 90 TSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEA 149
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RL+
Sbjct: 150 DSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLL 209
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+V++E VPY +GLEAIIFTA GDMRQALNNLQ+TYSGF F+N ENVFKVCD+PHPL V
Sbjct: 210 KIVEKEDVPYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLV 269
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
K M+++ + D+A L L+ LGYSP D+I +FR+ K ++M E+LKLEF+KE G+
Sbjct: 270 KEMIQHCINANIDEAYKILAHLWRLGYSPEDVIGNIFRVCKTFQMPEYLKLEFIKEIGYT 329
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HM+I +GV S LQ+ GLLA+L
Sbjct: 330 HMKIAEGVNSLLQMAGLLARL 350
>gi|55926133|ref|NP_446238.1| replication factor C subunit 2 [Rattus norvegicus]
gi|81884071|sp|Q641W4.1|RFC2_RAT RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 subunit C2
gi|51980598|gb|AAH82110.1| Replication factor C (activator 1) 2 [Rattus norvegicus]
gi|149063102|gb|EDM13425.1| replication factor C (activator 1) 2, isoform CRA_b [Rattus
norvegicus]
Length = 349
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 209/317 (65%), Positives = 267/317 (84%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
S ++ Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKTTSIL
Sbjct: 23 SKTTGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSIL 82
Query: 65 ALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
LA LLGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT
Sbjct: 83 CLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMT 142
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D ++LSRLM V++
Sbjct: 143 DGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIE 202
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
+EKVPY +GLEAIIFTA GDMRQALNNLQ+T+SGF ++N ENVFKVCD+PHPL VK M+
Sbjct: 203 KEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMI 262
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRI 304
++ ++ D+A L L+ LGYSP D+I +FR+ K + MAE+LKLEF+KE G+ HM++
Sbjct: 263 QHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKV 322
Query: 305 CDGVGSYLQLCGLLAKL 321
+GV S LQ+ GLLA+L
Sbjct: 323 AEGVNSLLQMAGLLARL 339
>gi|73957665|ref|XP_546916.2| PREDICTED: replication factor C subunit 2 isoform 1 [Canis lupus
familiaris]
Length = 352
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 212/322 (65%), Positives = 270/322 (83%), Gaps = 2/322 (0%)
Query: 2 ASSSSSSSA--YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
ASS + SA Y++PWVEKYRP K+ +IVGN D V+RL + A++GN+PN+I+AGPPGTGK
Sbjct: 21 ASSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGK 80
Query: 60 TTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDE 119
TTSIL LA LLGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDE
Sbjct: 81 TTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDE 140
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
ADSMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++LSD ++L+RL
Sbjct: 141 ADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARL 200
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH 239
+ V+++EKVPY +GLEA+IFTA GDMRQALNN+Q+T+SGF F+N ENVFKVCD+PHPL
Sbjct: 201 LTVLEQEKVPYTDDGLEAVIFTAQGDMRQALNNVQSTFSGFGFINSENVFKVCDEPHPLL 260
Query: 240 VKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGF 299
VK M+++ + D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+
Sbjct: 261 VKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGY 320
Query: 300 AHMRICDGVGSYLQLCGLLAKL 321
HM+I +GV S LQ+ GLLA+L
Sbjct: 321 THMKIAEGVNSLLQMAGLLARL 342
>gi|351705383|gb|EHB08302.1| Replication factor C subunit 2 [Heterocephalus glaber]
Length = 352
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 209/320 (65%), Positives = 269/320 (84%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
+ +SSS+ Y++PWVEKYRP K+ +IVGN D V+RL + +R+GN+PN+I+AGPPGTGKTT
Sbjct: 23 SKASSSAGHYELPWVEKYRPIKLNEIVGNEDTVSRLEVFSREGNVPNIIIAGPPGTGKTT 82
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA LLGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEAD
Sbjct: 83 SILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPRGRHKIIILDEAD 142
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D ++L+RL+
Sbjct: 143 SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLLS 202
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
V+++E VPY +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL VK
Sbjct: 203 VIEKEAVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVK 262
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAH 301
M+++ + D+A L L+ LGYSP D+I +FR+ K ++MAE+LKLEF+KE G+ H
Sbjct: 263 EMLQHCVSANIDEAYKILAHLWHLGYSPEDVIGNVFRVCKTFQMAEYLKLEFIKEIGYTH 322
Query: 302 MRICDGVGSYLQLCGLLAKL 321
MR+ +GV S LQ+ GLLA+L
Sbjct: 323 MRVAEGVNSLLQMAGLLARL 342
>gi|31563534|ref|NP_852136.1| replication factor C subunit 2 isoform 1 [Homo sapiens]
gi|2507300|sp|P35250.3|RFC2_HUMAN RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 40 kDa subunit; Short=A1 40 kDa
subunit; AltName: Full=Activator 1 subunit 2; AltName:
Full=Replication factor C 40 kDa subunit; Short=RF-C 40
kDa subunit; Short=RFC40
gi|1590811|gb|AAB09786.1| replication factor C, 40-kDa subunit [Homo sapiens]
gi|2914760|gb|AAC04860.1| replication factor C subunit 2 [Homo sapiens]
gi|30172692|gb|AAP22334.1| unknown [Homo sapiens]
gi|119590013|gb|EAW69607.1| replication factor C (activator 1) 2, 40kDa, isoform CRA_b [Homo
sapiens]
gi|119590014|gb|EAW69608.1| replication factor C (activator 1) 2, 40kDa, isoform CRA_b [Homo
sapiens]
gi|197692187|dbj|BAG70057.1| replication factor C 2 isoform 1 [Homo sapiens]
gi|208967280|dbj|BAG73654.1| replication factor C (activator 1) 2 [synthetic construct]
Length = 354
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 210/321 (65%), Positives = 268/321 (83%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+ + S+ Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKT
Sbjct: 24 FSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKT 83
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TSIL LA LLGP ++A++ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEA
Sbjct: 84 TSILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEA 143
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RLM
Sbjct: 144 DSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLM 203
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
V+++E+VPY +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL V
Sbjct: 204 NVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLV 263
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
K M+++ + D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+
Sbjct: 264 KEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYT 323
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HM+I +GV S LQ+ GLLA+L
Sbjct: 324 HMKIAEGVNSLLQMAGLLARL 344
>gi|114613995|ref|XP_001149874.1| PREDICTED: replication factor C subunit 2 isoform 4 [Pan
troglodytes]
gi|410213960|gb|JAA04199.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410213962|gb|JAA04200.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410250164|gb|JAA13049.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410250166|gb|JAA13050.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410250168|gb|JAA13051.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410250170|gb|JAA13052.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410250172|gb|JAA13053.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
Length = 354
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 210/321 (65%), Positives = 268/321 (83%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+ + S+ Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKT
Sbjct: 24 FSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKT 83
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TSIL LA LLGP ++A++ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEA
Sbjct: 84 TSILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEA 143
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RLM
Sbjct: 144 DSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLM 203
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
V+++E+VPY +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL V
Sbjct: 204 NVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLV 263
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
K M+++ + D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+
Sbjct: 264 KEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYT 323
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HM+I +GV S LQ+ GLLA+L
Sbjct: 324 HMKIAEGVNSLLQMAGLLARL 344
>gi|197692437|dbj|BAG70182.1| replication factor C 2 isoform 1 [Homo sapiens]
Length = 354
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 210/315 (66%), Positives = 266/315 (84%)
Query: 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
S+ Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKTTSIL L
Sbjct: 30 SAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCL 89
Query: 67 AHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG 126
A LLGP ++A++ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT G
Sbjct: 90 ARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDG 149
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RLM V+++E
Sbjct: 150 AQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKE 209
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
+VPY +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL VK M+++
Sbjct: 210 RVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQH 269
Query: 247 VLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICD 306
+ D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+ HM+I +
Sbjct: 270 CVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAE 329
Query: 307 GVGSYLQLCGLLAKL 321
GV S LQ+ GLLA+L
Sbjct: 330 GVNSLLQMAGLLARL 344
>gi|124249278|ref|NP_001074372.1| replication factor C subunit 2 [Bos taurus]
gi|122131746|sp|Q05B83.1|RFC2_BOVIN RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 subunit 2
gi|115545402|gb|AAI22636.1| Replication factor C (activator 1) 2, 40kDa [Bos taurus]
gi|296472929|tpg|DAA15044.1| TPA: replication factor C subunit 2 [Bos taurus]
Length = 352
Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust.
Identities = 211/320 (65%), Positives = 267/320 (83%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
+ + S+ Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKTT
Sbjct: 23 SKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTT 82
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA LLGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEAD
Sbjct: 83 SILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEAD 142
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RL+
Sbjct: 143 SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLS 202
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
V+++EKV Y +GLEAIIFTA GDMRQALNNLQ+TYSGF F+N ENVFKVCD+PHPL VK
Sbjct: 203 VIEKEKVQYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVK 262
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAH 301
M+++ + D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+ H
Sbjct: 263 EMIQHCVSADIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTH 322
Query: 302 MRICDGVGSYLQLCGLLAKL 321
M+I +GV S LQ+ GLLA+L
Sbjct: 323 MKIAEGVNSLLQMAGLLARL 342
>gi|440797689|gb|ELR18770.1| DNA replication factor C complex subunit 2, putative [Acanthamoeba
castellanii str. Neff]
Length = 346
Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust.
Identities = 215/315 (68%), Positives = 262/315 (83%), Gaps = 1/315 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + DIVGN++ V+RL IIA +GNMPNLILAGPPGTGKTTSIL LAH LL
Sbjct: 21 EVPWVEKYRPKDIKDIVGNVETVSRLQIIASEGNMPNLILAGPPGTGKTTSILCLAHALL 80
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
GPNYRE V+ELNASDDRGIDVVRNKIKMFAQKKV L PG+ KVV+LDEADSMT+ AQQAL
Sbjct: 81 GPNYREGVLELNASDDRGIDVVRNKIKMFAQKKVNLAPGRQKVVILDEADSMTSAAQQAL 140
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE-KVPY 190
RRTMEIYSN+TRFALACNVSSKIIEPIQSRCAI+R++RL DE++L RLM V++ E +P+
Sbjct: 141 RRTMEIYSNTTRFALACNVSSKIIEPIQSRCAILRYTRLGDEQVLKRLMEVIKAEGNIPH 200
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+GLEA++FTA+GDMRQALNNLQ+T++G+ FVN+ENVFKVCDQPHPL +K+++ G
Sbjct: 201 TDDGLEAVLFTAEGDMRQALNNLQSTHAGYGFVNRENVFKVCDQPHPLLIKSIMNECEAG 260
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
+ D A L L+ LGYS DII T+FR++K + E+LKLEF++E GFAHMR G+ S
Sbjct: 261 ELDTALQQLSSLWGLGYSAVDIIGTMFRVLKTMSIQEYLKLEFIREIGFAHMRAVKGMNS 320
Query: 311 YLQLCGLLAKLSIVR 325
LQL L+A+L V+
Sbjct: 321 LLQLKALIARLCAVK 335
>gi|11177922|ref|NP_064406.1| replication factor C subunit 2 [Mus musculus]
gi|23813636|sp|Q9WUK4.1|RFC2_MOUSE RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 40 kDa subunit; Short=A1 40 kDa
subunit; AltName: Full=Activator 1 subunit 2; AltName:
Full=Replication factor C 40 kDa subunit; Short=RF-C 40
kDa subunit; Short=RFC40
gi|4972952|gb|AAD34861.1|AF139987_4 replication factor C, 40kDa subunit [Mus musculus]
gi|9800515|gb|AAF99332.1|AF289664_3 RFC2 [Mus musculus]
gi|18606185|gb|AAH23028.1| Replication factor C (activator 1) 2 [Mus musculus]
gi|26344918|dbj|BAC36108.1| unnamed protein product [Mus musculus]
gi|68534875|gb|AAH99370.1| Replication factor C (activator 1) 2 [Mus musculus]
gi|74185767|dbj|BAE32762.1| unnamed protein product [Mus musculus]
gi|148687476|gb|EDL19423.1| replication factor C (activator 1) 2, isoform CRA_a [Mus musculus]
Length = 349
Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust.
Identities = 208/317 (65%), Positives = 267/317 (84%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
S ++ Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKTTSIL
Sbjct: 23 SKTAGHYELPWVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSIL 82
Query: 65 ALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
LA LLGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT
Sbjct: 83 CLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMT 142
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D ++L+RLM V++
Sbjct: 143 DGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIE 202
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
+EKVPY +GLEAIIFTA GDMRQALNNLQ+T+SGF ++N ENVFKVCD+PHPL VK M+
Sbjct: 203 KEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMI 262
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRI 304
++ ++ D+A L L+ LGYSP D+I +FR+ K + MAE+LKLEF+KE G+ HM++
Sbjct: 263 QHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKV 322
Query: 305 CDGVGSYLQLCGLLAKL 321
+GV S LQ+ GLLA+L
Sbjct: 323 AEGVNSLLQMAGLLARL 339
>gi|296192221|ref|XP_002743970.1| PREDICTED: replication factor C subunit 2 isoform 1 [Callithrix
jacchus]
Length = 352
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 212/322 (65%), Positives = 268/322 (83%), Gaps = 2/322 (0%)
Query: 2 ASSSSSSSA--YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
ASS + S Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGK
Sbjct: 21 ASSKAPGSCGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGK 80
Query: 60 TTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDE 119
TTSIL LA LLGP ++AV+ELNAS+DRGIDVVRNK+KMFAQ KVTLP G+HK+++LDE
Sbjct: 81 TTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKVKMFAQHKVTLPKGRHKIIILDE 140
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
ADSMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RL
Sbjct: 141 ADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRL 200
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH 239
M V+++E+VP+ +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL
Sbjct: 201 MSVIEKERVPHTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLL 260
Query: 240 VKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGF 299
VK M+++ + D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+
Sbjct: 261 VKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGY 320
Query: 300 AHMRICDGVGSYLQLCGLLAKL 321
HM+I +GV S LQ+ GLLA+L
Sbjct: 321 THMKIAEGVNSLLQMAGLLARL 342
>gi|328772590|gb|EGF82628.1| hypothetical protein BATDEDRAFT_86526 [Batrachochytrium
dendrobatidis JAM81]
Length = 340
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 216/324 (66%), Positives = 271/324 (83%), Gaps = 3/324 (0%)
Query: 1 MASSSSS---SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGT 57
+A+SS++ S + ++PW+EKYRP + DIVGN + VARL IIA++GNMPN+I+AG PG
Sbjct: 5 LANSSTAQPISESPELPWIEKYRPLVLSDIVGNEETVARLQIIAQEGNMPNIIIAGSPGI 64
Query: 58 GKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVL 117
GKTTSIL LAHELLG Y+E V+ELNASDDRGI+VVRN+IKMFAQKKVTLPPG+HK+V+L
Sbjct: 65 GKTTSILCLAHELLGSAYKEGVLELNASDDRGIEVVRNRIKMFAQKKVTLPPGRHKIVIL 124
Query: 118 DEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILS 177
DEADSMT+GAQQALRRTMEIYSN+TRFALACN+SSKIIEPIQSRCAI+R++RL+D ++L
Sbjct: 125 DEADSMTSGAQQALRRTMEIYSNTTRFALACNLSSKIIEPIQSRCAILRYTRLTDLQLLR 184
Query: 178 RLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHP 237
RL+ + + E V + PEGL AIIFTADGDMRQA+NNLQ+T SGF FVN ENVFKVCDQPHP
Sbjct: 185 RLLEICEMENVKHTPEGLSAIIFTADGDMRQAVNNLQSTNSGFGFVNPENVFKVCDQPHP 244
Query: 238 LHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
+ V+ +V + + + G+ +L+D GYS DIITTLFR++K++ MAE++KLEF+KE
Sbjct: 245 VLVQKIVDACVRTEVEIGIQGMTELWDKGYSALDIITTLFRVVKSFSMAEYIKLEFVKEI 304
Query: 298 GFAHMRICDGVGSYLQLCGLLAKL 321
GFAHMR+ +G S LQL GL+ KL
Sbjct: 305 GFAHMRLLEGCQSLLQLHGLIGKL 328
>gi|395843019|ref|XP_003794301.1| PREDICTED: replication factor C subunit 2 [Otolemur garnettii]
Length = 352
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 207/311 (66%), Positives = 265/311 (85%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
Y++PWVEKYRP K+ ++VGN D V+RL + AR+GN+PN+I+AGPPGTGKTTSIL LA L
Sbjct: 32 YELPWVEKYRPIKLNEVVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARAL 91
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT GAQQA
Sbjct: 92 LGPAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQA 151
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RL+ V+++EKVPY
Sbjct: 152 LRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLNVIEKEKVPY 211
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+GLEAIIFTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL VK M+++ ++
Sbjct: 212 TDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVDA 271
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
D+A L L+ LGYSP D+I +FR+ K ++MAE+LKLEF+KE G+ HM++ +GV S
Sbjct: 272 NIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKVAEGVNS 331
Query: 311 YLQLCGLLAKL 321
LQ+ GLLA+L
Sbjct: 332 LLQMAGLLARL 342
>gi|260820974|ref|XP_002605809.1| hypothetical protein BRAFLDRAFT_123856 [Branchiostoma floridae]
gi|229291144|gb|EEN61819.1| hypothetical protein BRAFLDRAFT_123856 [Branchiostoma floridae]
Length = 362
Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust.
Identities = 210/320 (65%), Positives = 263/320 (82%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
+S +SS Y++PWVEKYRP K+CD+VGN D V+RL + ++ GNMPN+I+AG PG GKTTSI
Sbjct: 33 TSGTSSGYELPWVEKYRPAKLCDVVGNEDTVSRLEVFSQQGNMPNIIIAGSPGIGKTTSI 92
Query: 64 LALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM 123
L LA LLGP Y++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSM
Sbjct: 93 LCLARTLLGPAYKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSM 152
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T GAQQALRRTMEIYS +TRFALACN S KIIE IQSRCA++R+S+L+D +IL RL+ V
Sbjct: 153 TDGAQQALRRTMEIYSKTTRFALACNASDKIIEAIQSRCAVLRYSKLTDNQILERLLYVC 212
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
++E V + +GLEA+IFTA GDMRQALNNLQ+T+SGF +VN ENVFKVCD+PHPL VK M
Sbjct: 213 EKENVEHTDDGLEAVIFTAQGDMRQALNNLQSTWSGFGYVNSENVFKVCDEPHPLLVKEM 272
Query: 244 VRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
+ + ++ D+A LK L+ +GYSP DII +FR+ K Y+M E+LKLEF+KE G+ HMR
Sbjct: 273 LGHCVDANIDEAYKILKHLWKMGYSPEDIIGNIFRVCKTYQMHEYLKLEFIKEIGYTHMR 332
Query: 304 ICDGVGSYLQLCGLLAKLSI 323
I GV S LQL GLLA+L +
Sbjct: 333 IVQGVDSLLQLSGLLARLCL 352
>gi|12847419|dbj|BAB27561.1| unnamed protein product [Mus musculus]
Length = 349
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 207/317 (65%), Positives = 265/317 (83%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
S ++ Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKTTSIL
Sbjct: 23 SKTAGHYELPWVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSIL 82
Query: 65 ALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
LA LLGP ++AV LNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT
Sbjct: 83 CLARALLGPALKDAVWRLNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMT 142
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D ++L+RLM V++
Sbjct: 143 DGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIE 202
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
+EKVPY +GLEAIIFTA GDMRQALNNLQ+T+SGF ++N ENVFKVCD+PHPL VK M+
Sbjct: 203 KEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMI 262
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRI 304
++ ++ D+A L L+ LGYSP D+I +FR+ K + MAE+LKLEF+KE G+ HM++
Sbjct: 263 QHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKV 322
Query: 305 CDGVGSYLQLCGLLAKL 321
+GV S LQ+ GLLA+L
Sbjct: 323 AEGVNSLLQMAGLLARL 339
>gi|355716182|gb|AES05529.1| replication factor C 2, 40kDa [Mustela putorius furo]
Length = 351
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 207/315 (65%), Positives = 265/315 (84%)
Query: 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
S+ Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKTTSIL L
Sbjct: 28 SAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCL 87
Query: 67 AHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG 126
A LLG +++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT G
Sbjct: 88 ARALLGSAFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPRGRHKIIILDEADSMTDG 147
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++LSD ++L+RL+ V+++E
Sbjct: 148 AQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLAVLEQE 207
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
KVPY +GLEA+IFTA GDMRQALNN+Q+T+SGF F+N ENVFKVCD+PHPL VK M+++
Sbjct: 208 KVPYTDDGLEAVIFTAQGDMRQALNNVQSTFSGFGFINSENVFKVCDEPHPLLVKEMLQH 267
Query: 247 VLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICD 306
+ D+A L L+ LGYSP DII +FR+ K ++MAE+LKLE +KE G+ HM+I +
Sbjct: 268 CVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEIIKEIGYTHMKIAE 327
Query: 307 GVGSYLQLCGLLAKL 321
GV S LQ+ GLLA+L
Sbjct: 328 GVNSLLQMAGLLARL 342
>gi|440908469|gb|ELR58483.1| Replication factor C subunit 2 [Bos grunniens mutus]
Length = 354
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 211/322 (65%), Positives = 267/322 (82%), Gaps = 2/322 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
+ + S+ Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKTT
Sbjct: 23 SKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTT 82
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA LLGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEAD
Sbjct: 83 SILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEAD 142
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKII--EPIQSRCAIVRFSRLSDEEILSRL 179
SMT GAQQALRRTMEIYS +TRFALACN S KII EPIQSRCA++R+++L+D +IL+RL
Sbjct: 143 SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIGEEPIQSRCAVLRYTKLTDTQILARL 202
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH 239
+ V+++EKV Y +GLEAIIFTA GDMRQALNNLQ+TYSGF F+N ENVFKVCD+PHPL
Sbjct: 203 LSVIEKEKVQYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLL 262
Query: 240 VKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGF 299
VK M+++ + D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+
Sbjct: 263 VKEMIQHCVSADIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGY 322
Query: 300 AHMRICDGVGSYLQLCGLLAKL 321
HM+I +GV S LQ+ GLLA+L
Sbjct: 323 THMKIAEGVNSLLQMAGLLARL 344
>gi|417399418|gb|JAA46724.1| Putative replication factor c subunit 2 [Desmodus rotundus]
Length = 350
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 208/320 (65%), Positives = 265/320 (82%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
+ + S+ Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKTT
Sbjct: 21 SKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTT 80
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA LLG ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEAD
Sbjct: 81 SILCLARALLGSALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPRGRHKIIILDEAD 140
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RL+
Sbjct: 141 SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLT 200
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
V+++EKV + +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL VK
Sbjct: 201 VIEKEKVQHTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVK 260
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAH 301
M+++ + D A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+ H
Sbjct: 261 EMIQHCVNADIDGAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTH 320
Query: 302 MRICDGVGSYLQLCGLLAKL 321
M+I +GV S LQ+ GLLA+L
Sbjct: 321 MKIAEGVNSLLQMSGLLARL 340
>gi|338712627|ref|XP_001504577.3| PREDICTED: replication factor C subunit 2-like isoform 1 [Equus
caballus]
Length = 353
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 207/321 (64%), Positives = 265/321 (82%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGI-IARDGNMPNLILAGPPGTGKT 60
+ S+ Y++PWVEKYRP K+ +IVGN D V+RL + + R+GN+PN+I+AGPPGTGKT
Sbjct: 23 GKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVSLCREGNVPNIIIAGPPGTGKT 82
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TSIL LA LLGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEA
Sbjct: 83 TSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEA 142
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D ++L+RLM
Sbjct: 143 DSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLM 202
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
++++E VPY +GLEAI+FTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL V
Sbjct: 203 TIIEKENVPYTDDGLEAIVFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLV 262
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
K M+++ + D A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+
Sbjct: 263 KEMIQHCVNADIDGAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYT 322
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
H++I DGV S LQ+ GLLA+L
Sbjct: 323 HVKIADGVNSLLQMAGLLARL 343
>gi|320163905|gb|EFW40804.1| DNA replication factor C subunit Rfc4 [Capsaspora owczarzaki ATCC
30864]
Length = 366
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 208/316 (65%), Positives = 260/316 (82%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
+++ ++PWVEKYRP + D+VGN D VARL IIA +GNMPN+I+AG PGTGKTTSIL
Sbjct: 44 TTTGQSEMPWVEKYRPILLKDVVGNEDTVARLQIIAEEGNMPNIIIAGQPGTGKTTSILC 103
Query: 66 LAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
LAH+LLGP Y+ AV+ELNASDDRGIDVVRN IKMFAQKKVTLPPG+ KV++LDEADSMT
Sbjct: 104 LAHQLLGPAYKNAVLELNASDDRGIDVVRNDIKMFAQKKVTLPPGRQKVIILDEADSMTE 163
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQQALRRTMEIYS +TRFALACN+S KIIEPIQSRCAI+R++RL+DE+IL RL+ +
Sbjct: 164 AAQQALRRTMEIYSATTRFALACNMSDKIIEPIQSRCAILRYTRLTDEQILKRLLEICDA 223
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
EKVP EGL A+IFTA GDMRQA+NNLQ+T+SGF FVN +NVFK+CDQPHPL V+ ++
Sbjct: 224 EKVPRTEEGLTALIFTAQGDMRQAVNNLQSTFSGFGFVNLDNVFKICDQPHPLIVQKILE 283
Query: 246 NVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
G D+A + L+ L+ LGYSP DII+T+FR+ KN+ + E L+L F+KE G+ HMRI
Sbjct: 284 ACKVGNIDEAYAQLESLWALGYSPLDIISTIFRVTKNFPLPEALQLGFIKEIGYTHMRIA 343
Query: 306 DGVGSYLQLCGLLAKL 321
DG+G+ +QL GL+A++
Sbjct: 344 DGLGTLMQLTGLIARM 359
>gi|344289927|ref|XP_003416692.1| PREDICTED: replication factor C subunit 2-like [Loxodonta africana]
Length = 352
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 209/320 (65%), Positives = 263/320 (82%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
+S + Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKTT
Sbjct: 23 GKASGGAGHYELPWVEKYRPVKLNEIVGNEDTVSRLQVFAREGNVPNIIIAGPPGTGKTT 82
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA LLGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEAD
Sbjct: 83 SILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPRGRHKIIILDEAD 142
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RLM
Sbjct: 143 SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLMD 202
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
V+++EKV +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL VK
Sbjct: 203 VIEKEKVQCTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVK 262
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAH 301
M++ + D+A L L+ LGYS DII +FR+ K ++MAE+LKLEF+KE G+ H
Sbjct: 263 EMIQRCVNADIDEAYKILAHLWHLGYSSEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTH 322
Query: 302 MRICDGVGSYLQLCGLLAKL 321
M+I +GV S LQ+ GLLA+L
Sbjct: 323 MKIVEGVNSLLQMAGLLARL 342
>gi|348517074|ref|XP_003446060.1| PREDICTED: replication factor C subunit 2-like [Oreochromis
niloticus]
Length = 357
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 208/312 (66%), Positives = 264/312 (84%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
AY++PWVEKYRP K+ +IVGN + V+RL + AR+GN+PN+I+AGPPGTGKTTSIL LA
Sbjct: 36 AYELPWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARA 95
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
LLG + ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT GAQQ
Sbjct: 96 LLGTSMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQ 155
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRR MEIYS +TRFALACN S KIIEPIQSRCA++R+S+L+D +IL RL VV++E++
Sbjct: 156 ALRRIMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLTDGQILVRLQEVVEKERLS 215
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
+GLEAIIFTA GDMRQALNNLQ+T+SGF ++N ENVFKVCD+PHPL VK+M+ + ++
Sbjct: 216 VSDDGLEAIIFTAQGDMRQALNNLQSTHSGFGYINSENVFKVCDEPHPLMVKSMLGHCVD 275
Query: 250 GKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
G D+A ++QL+ LGYSP DII +FR+ K Y+MAE+LKLEF+KE G+ HMRI +GV
Sbjct: 276 GNIDEAYKVVEQLWALGYSPEDIIGNIFRVCKTYQMAEYLKLEFIKEIGYTHMRIAEGVN 335
Query: 310 SYLQLCGLLAKL 321
S LQ+ GLLA+L
Sbjct: 336 SLLQMAGLLARL 347
>gi|395536548|ref|XP_003770276.1| PREDICTED: replication factor C subunit 2 [Sarcophilus harrisii]
Length = 406
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 208/308 (67%), Positives = 260/308 (84%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
P VEKYRPTK+ +IVGN D V+RL + AR+GN+PN+I++GPPGTGKTTSIL LA LLGP
Sbjct: 89 PRVEKYRPTKLTEIVGNEDTVSRLEVFAREGNVPNIIISGPPGTGKTTSILCLARALLGP 148
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
+ ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT GAQQALRR
Sbjct: 149 SLKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRR 208
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
TMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D ++L+RLM V+++EKV Y +
Sbjct: 209 TMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMAVIEKEKVEYTDD 268
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
GLEAIIFTA GDMRQALNNLQ+TYSGF F+N ENVFKVCD+PHPL VK M+++ + D
Sbjct: 269 GLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMLQHCVSANID 328
Query: 254 DACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
+A L L+ LGYSP D+I +FR+ K ++M E+LKLEF+KE G+ HM+I DGV S LQ
Sbjct: 329 EAYKILAHLWRLGYSPEDVIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIADGVNSLLQ 388
Query: 314 LCGLLAKL 321
+ GLLAKL
Sbjct: 389 MAGLLAKL 396
>gi|345311289|ref|XP_001516769.2| PREDICTED: replication factor C subunit 2-like [Ornithorhynchus
anatinus]
Length = 329
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 205/312 (65%), Positives = 261/312 (83%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
A + WVEKYRP K+ +IVGN D V+RL + A++GN+PN+I+AGPPGTGKTTSIL LA
Sbjct: 8 ARAVTWVEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARA 67
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
LLGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK++VLDEADSMT GAQQ
Sbjct: 68 LLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPRGRHKIIVLDEADSMTDGAQQ 127
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D ++L+RL+ V+++E VP
Sbjct: 128 ALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLLKVIEKEDVP 187
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
+ +GLEAI+FTA GDMRQALNNLQ+TYSGF F+N ENVFKVCD+PHPL VK M+++ +
Sbjct: 188 HSDDGLEAIVFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCVH 247
Query: 250 GKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+ HM++ +GV
Sbjct: 248 ANIDEAYKILAHLWRLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKVAEGVN 307
Query: 310 SYLQLCGLLAKL 321
S LQ+ GLLA+L
Sbjct: 308 SLLQMAGLLARL 319
>gi|348041239|ref|NP_001013344.2| replication factor C subunit 2 [Danio rerio]
Length = 353
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 207/322 (64%), Positives = 267/322 (82%), Gaps = 2/322 (0%)
Query: 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
+++AY++PWVEKYRP K+ +IVGN + V+RL + AR+GN+PN+I+AGPPGTGKTTSIL L
Sbjct: 29 TTTAYELPWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCL 88
Query: 67 AHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG 126
A LLGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT G
Sbjct: 89 ARALLGPAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDG 148
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+S+L DE+I+ RL VV++E
Sbjct: 149 AQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLTEVVEKE 208
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
+ +GLEAIIFTA GDMRQALNNLQ+T SGF ++N ENVFKVCD+PHPL VK+M+ +
Sbjct: 209 NLHVTNDGLEAIIFTAQGDMRQALNNLQSTNSGFGYINSENVFKVCDEPHPLLVKSMLEH 268
Query: 247 VLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICD 306
+ D+A ++QL+ LGYSP DII +FR+ K ++MAE+LKLE++KE G+ HM++ +
Sbjct: 269 CVNANIDEAYKIIEQLWSLGYSPEDIIGNIFRVCKTFQMAEYLKLEYIKEIGYTHMKVAE 328
Query: 307 GVGSYLQLCGLLAKLSIVRETA 328
GV S LQ+ GLL +L R+TA
Sbjct: 329 GVNSLLQMAGLLGRL--CRKTA 348
>gi|60477744|gb|AAH90779.1| Zgc:110810 [Danio rerio]
gi|182890088|gb|AAI64018.1| Zgc:110810 protein [Danio rerio]
Length = 349
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 207/322 (64%), Positives = 267/322 (82%), Gaps = 2/322 (0%)
Query: 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
+++AY++PWVEKYRP K+ +IVGN + V+RL + AR+GN+PN+I+AGPPGTGKTTSIL L
Sbjct: 25 TTTAYELPWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCL 84
Query: 67 AHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG 126
A LLGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT G
Sbjct: 85 ARALLGPAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDG 144
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+S+L DE+I+ RL VV++E
Sbjct: 145 AQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLTEVVEKE 204
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
+ +GLEAIIFTA GDMRQALNNLQ+T SGF ++N ENVFKVCD+PHPL VK+M+ +
Sbjct: 205 NLHVTNDGLEAIIFTAQGDMRQALNNLQSTNSGFGYINSENVFKVCDEPHPLLVKSMLEH 264
Query: 247 VLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICD 306
+ D+A ++QL+ LGYSP DII +FR+ K ++MAE+LKLE++KE G+ HM++ +
Sbjct: 265 CVNANIDEAYKIIEQLWSLGYSPEDIIGNIFRVCKTFQMAEYLKLEYIKEIGYTHMKVAE 324
Query: 307 GVGSYLQLCGLLAKLSIVRETA 328
GV S LQ+ GLL +L R+TA
Sbjct: 325 GVNSLLQMAGLLGRL--CRKTA 344
>gi|426255304|ref|XP_004021294.1| PREDICTED: replication factor C subunit 2 [Ovis aries]
Length = 403
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 207/306 (67%), Positives = 259/306 (84%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY 75
VEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKTTSIL LA LLGP
Sbjct: 88 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 147
Query: 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTM 135
++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT GAQQALRRTM
Sbjct: 148 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 207
Query: 136 EIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGL 195
EIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RL+ V+++EKV Y +GL
Sbjct: 208 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLSVIEKEKVQYTDDGL 267
Query: 196 EAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDA 255
EAIIFTA GDMRQALNNLQ+TYSGF F+N ENVFKVCD+PHPL VK M+++ + D+A
Sbjct: 268 EAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCVSADIDEA 327
Query: 256 CSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLC 315
L L+ LGYSP DII+ +FR+ K ++MAE+LKLEF+KE G+ HM+I +GV S LQ+
Sbjct: 328 YKILAHLWHLGYSPEDIISNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 387
Query: 316 GLLAKL 321
GLLA+L
Sbjct: 388 GLLARL 393
>gi|449282866|gb|EMC89612.1| Replication factor C subunit 2, partial [Columba livia]
Length = 316
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 204/306 (66%), Positives = 258/306 (84%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY 75
VEKYRP K+C+IVGN D V+RL + A++GN+PN+I+AGPPGTGKTTSIL LA LLGP
Sbjct: 1 VEKYRPMKLCEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 60
Query: 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTM 135
++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT GAQQALRRTM
Sbjct: 61 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 120
Query: 136 EIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGL 195
EIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RL+ +V++E VPY +GL
Sbjct: 121 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYTDDGL 180
Query: 196 EAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDA 255
EAIIFTA GDMRQALNNLQ+TYSGF F+N ENVFKVCD+PHPL VK M+++ + D+A
Sbjct: 181 EAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEA 240
Query: 256 CSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLC 315
L L+ LGY+P D+I +FR+ K ++M E+LKLEF+KE G+ HM+I +GV S LQ+
Sbjct: 241 YKILAHLWRLGYAPEDVIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 300
Query: 316 GLLAKL 321
GLLA+L
Sbjct: 301 GLLARL 306
>gi|327289387|ref|XP_003229406.1| PREDICTED: replication factor C subunit 2-like [Anolis
carolinensis]
Length = 329
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 208/312 (66%), Positives = 259/312 (83%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
++ P VEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKTTSIL LA
Sbjct: 8 SFITPLVEKYRPLKLSEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARA 67
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
LLGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT GAQQ
Sbjct: 68 LLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQ 127
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+S+L+D ++L+RLM +V++E V
Sbjct: 128 ALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLTDGQVLARLMKIVEKENVQ 187
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
Y +GLEAIIFTA GDMRQALNNLQ+T+SGF FVN ENVFKVCD+PHPL VK M+ + +
Sbjct: 188 YTDDGLEAIIFTAQGDMRQALNNLQSTHSGFGFVNSENVFKVCDEPHPLLVKEMLGHCVS 247
Query: 250 GKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+ HM+I +GV
Sbjct: 248 ANIDEAYKILAHLWKLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVN 307
Query: 310 SYLQLCGLLAKL 321
S LQ+ GLLA+L
Sbjct: 308 SLLQMAGLLARL 319
>gi|354484828|ref|XP_003504588.1| PREDICTED: replication factor C subunit 2-like [Cricetulus griseus]
Length = 325
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 204/306 (66%), Positives = 260/306 (84%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY 75
VEKYRP K+ +IVGN D V+RL + A++GN+PN+I+AGPPGTGKTTSIL LA LLGP
Sbjct: 10 VEKYRPIKLDEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 69
Query: 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTM 135
++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT GAQQALRRTM
Sbjct: 70 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 129
Query: 136 EIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGL 195
EIYS +TRFALACN S KIIEPIQSRCA++R+++L+D ++L+RLM V+++EKVPY +GL
Sbjct: 130 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDGL 189
Query: 196 EAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDA 255
EAIIFTA GDMRQALNNLQ+T+SGF ++N ENVFKVCD+PHPL VK M+++ ++ D+A
Sbjct: 190 EAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMIQHCVDANIDEA 249
Query: 256 CSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLC 315
L L+ LGYSP DII+ +FR+ K + MAE+LKLEF+KE G+ HM++ +GV S LQ+
Sbjct: 250 YKILAHLWHLGYSPEDIISNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAEGVNSLLQMA 309
Query: 316 GLLAKL 321
GLLA+L
Sbjct: 310 GLLARL 315
>gi|213513822|ref|NP_001134786.1| replication factor C subunit 2 [Salmo salar]
gi|209735998|gb|ACI68868.1| Replication factor C subunit 2 [Salmo salar]
Length = 353
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 206/320 (64%), Positives = 263/320 (82%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A + SSS Y++PWVEKYRP K+ +IVGN + V+RL + AR+GN+PN+I+AGPPGTGKTT
Sbjct: 24 APAKLSSSGYELPWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTT 83
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA LLGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEAD
Sbjct: 84 SILCLARALLGPAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEAD 143
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L DE+I+ RL+
Sbjct: 144 SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLRDEQIMMRLLE 203
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
VV+ E + +GLEAIIFTA GDMRQALNNLQ+T SGF ++N ENVFKVCD+PHPL VK
Sbjct: 204 VVERENLVTSNDGLEAIIFTAQGDMRQALNNLQSTNSGFGYINSENVFKVCDEPHPLLVK 263
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAH 301
+M+ + + D+A ++QL+ LGYSP DII +FR+ K ++M E+LKLEF+KE G+ H
Sbjct: 264 SMLEHCVNANIDEAYKIIEQLWALGYSPEDIIGNIFRVCKTFQMPEYLKLEFIKEIGYTH 323
Query: 302 MRICDGVGSYLQLCGLLAKL 321
M++ +GV S LQ+ GLL +L
Sbjct: 324 MKVAEGVNSLLQMAGLLGRL 343
>gi|326427125|gb|EGD72695.1| replication factor C subunit 2 [Salpingoeca sp. ATCC 50818]
Length = 324
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 208/311 (66%), Positives = 255/311 (81%), Gaps = 1/311 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
+ PWVEKYRP + DIVGN + V RL +IA GNMPNLI+AGPPGTGKTTSIL LA LL
Sbjct: 2 ETPWVEKYRPKVLKDIVGNEETVDRLKVIAEAGNMPNLIIAGPPGTGKTTSILCLARALL 61
Query: 72 GPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
G + Y+EAVME NASDDRGI+VVRN IKMF++KKVTLPPG+HK+V+LDE DSMT+ AQQA
Sbjct: 62 GEDVYKEAVMETNASDDRGIEVVRNNIKMFSRKKVTLPPGRHKIVILDEVDSMTSAAQQA 121
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTME+Y+N+TRFALACN S KIIEPIQSRCA++R++RLSD ++L RL+ + +E VP
Sbjct: 122 LRRTMEMYANTTRFALACNTSEKIIEPIQSRCAVLRYTRLSDAQLLKRLLEICDQEMVPK 181
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
V EGLEAIIFTA GDMRQA+NNLQ+TY+GF VN ENVFKVCDQPHPL V+ +V +EG
Sbjct: 182 VEEGLEAIIFTAQGDMRQAINNLQSTYAGFGMVNAENVFKVCDQPHPLLVQAIVAACIEG 241
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
D A G+++L+ +GY+P DIIT FRI+K Y+M E+L LEF+KE G H+R+ DGV S
Sbjct: 242 DIDKAYGGMQELWGMGYAPVDIITVFFRIVKQYDMPEYLTLEFVKEIGRTHIRVLDGVDS 301
Query: 311 YLQLCGLLAKL 321
++QL GLLA+L
Sbjct: 302 FMQLTGLLARL 312
>gi|395334442|gb|EJF66818.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 344
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 207/321 (64%), Positives = 267/321 (83%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A+ ++S+ Y++PWVEKYRP + D+VGN D + RL +IARDGN P++I++G PG GKTT
Sbjct: 12 ANGAASTLPYELPWVEKYRPQVLDDVVGNTDTIERLKVIARDGNCPHIIISGMPGIGKTT 71
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SI LAH+LLG Y+E V+ELNASD+RGIDVVRNKIK FAQKKVTLP G+HK+V+LDEAD
Sbjct: 72 SIHCLAHQLLGDAYKEGVLELNASDERGIDVVRNKIKAFAQKKVTLPSGRHKIVILDEAD 131
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMTAGAQQALRRTMEIY+N+TRFALACN+S+KIIEPIQSRCAI+R+S+L D E+L RL+
Sbjct: 132 SMTAGAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCAILRYSKLRDTEVLKRLLE 191
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ + EKV Y EGLEA+IFTA+GDMRQA+NNLQ+T+SGF FV+ +NVFKVCDQPHP+ V+
Sbjct: 192 ICEMEKVQYNDEGLEALIFTAEGDMRQAINNLQSTWSGFGFVSGDNVFKVCDQPHPITVQ 251
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
M+R+ L+G D A L +L+D GYS DI+ T+FR++K + E+ E+ KLEF+KE G+
Sbjct: 252 AMIRSCLKGDIDAAMDRLNELWDQGYSAVDIVVTIFRVVKTFDEIPEYTKLEFIKEIGWT 311
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI +GVG+ +QL GL+A+L
Sbjct: 312 HMRILEGVGTLVQLGGLMARL 332
>gi|302698263|ref|XP_003038810.1| hypothetical protein SCHCODRAFT_84256 [Schizophyllum commune H4-8]
gi|300112507|gb|EFJ03908.1| hypothetical protein SCHCODRAFT_84256 [Schizophyllum commune H4-8]
Length = 340
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 208/328 (63%), Positives = 268/328 (81%), Gaps = 7/328 (2%)
Query: 1 MASSSSSSSA------YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGP 54
M+SSS + + Y++PWVEKYRP + D+VGN D + RL +IARDGN P++I++G
Sbjct: 1 MSSSSKAKATGPADAPYELPWVEKYRPQVLDDVVGNADTIDRLKVIARDGNCPHIIISGM 60
Query: 55 PGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKV 114
PG GKTTSI LAH+LLGP Y+E V+ELNASD+RGIDVVRNKIK FAQKKVTLPPG+HK+
Sbjct: 61 PGIGKTTSIHCLAHQLLGPAYKEGVLELNASDERGIDVVRNKIKNFAQKKVTLPPGRHKI 120
Query: 115 VVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEE 174
++LDEADSMTAGAQQALRRTMEI+SN+TRF LACN+S+KIIEPIQSRCAI+R+ +L D+E
Sbjct: 121 IILDEADSMTAGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYGKLKDQE 180
Query: 175 ILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQ 234
IL RL+ + + EKV Y +GL A+IFTA+GDMRQA+NNLQ+T+SGF FV+ +NVFKVCDQ
Sbjct: 181 ILKRLLEICEAEKVEYNDDGLTALIFTAEGDMRQAINNLQSTWSGFGFVSGDNVFKVCDQ 240
Query: 235 PHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEF 293
PHP+ ++ ++R L+G D A L +L+D GYS DI+ TLFR++KN+ E+ E+ KLE+
Sbjct: 241 PHPITIQTIIRCCLKGDIDGAMVKLTELWDQGYSAVDIVVTLFRVVKNFDEIPEYTKLEY 300
Query: 294 MKEAGFAHMRICDGVGSYLQLCGLLAKL 321
+KE GF HMRI +GVG+ +QL GLLA+L
Sbjct: 301 IKEIGFTHMRILEGVGTIIQLSGLLARL 328
>gi|147904320|ref|NP_001084837.1| replication factor C (activator 1) 2, 40kDa [Xenopus laevis]
gi|47124709|gb|AAH70622.1| MGC81391 protein [Xenopus laevis]
Length = 348
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 204/319 (63%), Positives = 263/319 (82%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
++ S + Y++PWVEKYRP K+ +IVGN + V+RL + AR+GN+PN+I+AGPPGTGKTTS
Sbjct: 21 ATKSLAVTYELPWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTS 80
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
IL LA LLGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADS
Sbjct: 81 ILCLARALLGPTMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADS 140
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D ++L+RLM V
Sbjct: 141 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMDV 200
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
V++EKV +GLEAI+FTA GDMRQALNN+Q+T +GF FVN NVFKVCD+PHPL VK
Sbjct: 201 VEKEKVQCTDDGLEAIVFTAQGDMRQALNNVQSTCAGFGFVNSTNVFKVCDEPHPLLVKE 260
Query: 243 MVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHM 302
M+++ + D+A + L+ LGYSP DII +FR+ K ++M E+LKLEF+KE G+ HM
Sbjct: 261 MLQHCVNANIDEAYKIVAHLWKLGYSPEDIIGNIFRVCKTFQMPEYLKLEFIKEIGYTHM 320
Query: 303 RICDGVGSYLQLCGLLAKL 321
+I +GV S LQ+ GLLA+L
Sbjct: 321 KIAEGVNSLLQMAGLLARL 339
>gi|410898978|ref|XP_003962974.1| PREDICTED: replication factor C subunit 2-like [Takifugu rubripes]
Length = 350
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 205/317 (64%), Positives = 264/317 (83%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
S+ + Y++PWVEKYRP K+ ++VGN + V+RL + AR+GN+PN+I+AGPPGTGKTTSIL
Sbjct: 24 SAKNPTYELPWVEKYRPLKLNEVVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSIL 83
Query: 65 ALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
LA LLG + ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT
Sbjct: 84 CLARALLGASTKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPRGRHKIIILDEADSMT 143
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
GAQQALRR MEIYS +TRFALACN S KIIEPIQSRCA++R+S+L+D +IL+RL VV+
Sbjct: 144 DGAQQALRRIMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLTDGQILARLQEVVE 203
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
+E + +GLEA+IFTA GDMRQALNNLQ+T +GF FVN ENVFKVCD+PHPL VK+M+
Sbjct: 204 KEALSVSDDGLEAVIFTAQGDMRQALNNLQSTNAGFGFVNSENVFKVCDEPHPLLVKSML 263
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRI 304
+ ++G D+A ++QL+ LGYSP DII +FR+ K Y+MAE+LKLEF+KE G+ HMR+
Sbjct: 264 GHCVDGNIDEAYKVVEQLWALGYSPEDIIGNIFRVCKTYQMAEYLKLEFIKEIGYTHMRV 323
Query: 305 CDGVGSYLQLCGLLAKL 321
+GV S LQ+ GLL +L
Sbjct: 324 AEGVNSLLQMAGLLGRL 340
>gi|392571020|gb|EIW64192.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 345
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 205/312 (65%), Positives = 262/312 (83%), Gaps = 1/312 (0%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
Y++PWVEKYRP + D+VGN D + RL IIARDGN P++I++G PG GKTTSI LAH+L
Sbjct: 22 YELPWVEKYRPQVLDDVVGNTDTIERLKIIARDGNCPHIIISGMPGIGKTTSIHCLAHQL 81
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LG Y+E V+ELNASD+RGIDVVRNKIK FAQKKVTLPPG+HK+V+LDEADSMTAGAQQA
Sbjct: 82 LGDGYKEGVLELNASDERGIDVVRNKIKSFAQKKVTLPPGRHKIVILDEADSMTAGAQQA 141
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIY+N+TRFALACN+S+KIIEPIQSRCAI+R+S+L D+E+L RL+ + + EKV Y
Sbjct: 142 LRRTMEIYANTTRFALACNMSNKIIEPIQSRCAILRYSKLRDQEVLKRLLEICEMEKVEY 201
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
EGLEA+IFTA+GDMRQA+NNLQ+T+SGF FV+ +NVFKVCDQPHP+ V+ M+R L+G
Sbjct: 202 SNEGLEALIFTAEGDMRQAINNLQSTWSGFGFVSGDNVFKVCDQPHPITVQAMIRACLKG 261
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVG 309
+ A L +L+D GYS DI+ T+FR++K + E+ E+ KLE++KE G+ HMRI +GVG
Sbjct: 262 DIEGAMDKLDELWDQGYSAVDIVVTVFRVVKTFDEIPEYTKLEYIKEIGWTHMRILEGVG 321
Query: 310 SYLQLCGLLAKL 321
+ +QL GL+A+L
Sbjct: 322 TLIQLGGLMARL 333
>gi|405964852|gb|EKC30294.1| Replication factor C subunit 2 [Crassostrea gigas]
Length = 344
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 202/321 (62%), Positives = 261/321 (81%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+A+ SS + ++ PWVEKYRP K+ DIVGN + ++RL + RDGN+PN+I+AGPPGTGKT
Sbjct: 13 VATKSSGNPHHEQPWVEKYRPVKLHDIVGNEETISRLEVFGRDGNVPNVIIAGPPGTGKT 72
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TSIL LA +LGP+YR+AV+E+NAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEA
Sbjct: 73 TSILCLARAMLGPSYRDAVLEMNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEA 132
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+S+L+D ++L RL+
Sbjct: 133 DSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLTDAQVLKRLL 192
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
V + E V Y +GLEAI+FTA GDMRQALNNLQ+T+ GF VN ENVFKVCD+PHP+ +
Sbjct: 193 EVCEAEAVSYTDDGLEAIVFTAQGDMRQALNNLQSTFQGFGHVNSENVFKVCDEPHPMLI 252
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
++M+++ + G ++A + L+ LGYS DIIT +FR+ KN + E LKLEF+KE G+
Sbjct: 253 QDMLQHCVNGNVEEAYKTMAHLWKLGYSADDIITIIFRVCKNQNIPEFLKLEFIKEIGYT 312
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI +GV S LQ+ LLA+L
Sbjct: 313 HMRIAEGVQSLLQMSALLARL 333
>gi|213983145|ref|NP_001135488.1| replication factor C (activator 1) 2, 40kDa [Xenopus (Silurana)
tropicalis]
gi|195539917|gb|AAI67884.1| Unknown (protein for MGC:135299) [Xenopus (Silurana) tropicalis]
Length = 345
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 200/314 (63%), Positives = 258/314 (82%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
S+ + Y++PWVEKYRP K+ +IVGN + V+RL + AR+GN+PN+I+AGPPGTGKTTS
Sbjct: 21 SAKGLAGTYELPWVEKYRPLKLSEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTS 80
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
IL LA LLGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADS
Sbjct: 81 ILCLARALLGPTMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADS 140
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D ++L+RLM V
Sbjct: 141 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMDV 200
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
V++E+V +GLEAI+FTA GDMRQALNNLQ+T++GF FVN NVFKVCD+PHPL VK
Sbjct: 201 VEKERVQCTDDGLEAIVFTAQGDMRQALNNLQSTFAGFGFVNSTNVFKVCDEPHPLLVKE 260
Query: 243 MVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHM 302
M+++ + D+A + L+ LGYSP DII +FR+ K ++M E+LKLEF+KE G+ HM
Sbjct: 261 MLQHCVNANIDEAYKVVAHLWKLGYSPEDIIGNIFRVCKTFQMPEYLKLEFIKEIGYTHM 320
Query: 303 RICDGVGSYLQLCG 316
+I +GV S LQ+ G
Sbjct: 321 KIAEGVNSLLQMAG 334
>gi|241725881|ref|XP_002412213.1| replication factor C, subunit RFC2, putative [Ixodes scapularis]
gi|215505426|gb|EEC14920.1| replication factor C, subunit RFC2, putative [Ixodes scapularis]
Length = 336
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 200/311 (64%), Positives = 258/311 (82%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP K +IVGN + +ARL + +R+GN+PN+IL+GPPG GKTT+IL L+ LLG
Sbjct: 19 VPWVEKYRPAKFNEIVGNEETIARLEVFSREGNVPNVILSGPPGVGKTTTILCLSRILLG 78
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
P++R+AV+ELNAS+DRGIDVVRNKIKMFAQKKVTLPPGKHKV++LDEADSMT GAQQALR
Sbjct: 79 PSFRDAVLELNASNDRGIDVVRNKIKMFAQKKVTLPPGKHKVIILDEADSMTEGAQQALR 138
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTMEIYS +TRFALACN S KIIEPIQSRCA+VRFSRLSD ++L++L+ + ++E V Y
Sbjct: 139 RTMEIYSKTTRFALACNTSDKIIEPIQSRCAVVRFSRLSDAQVLAKLLDICKQEDVSYAE 198
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GLEA++FTA GDMRQA+NNLQ+T+ GF VN ENVFKVCD+PHPL +K+M+++ +EG+
Sbjct: 199 DGLEALVFTAQGDMRQAINNLQSTFVGFSHVNSENVFKVCDEPHPLLIKDMLQHCVEGEL 258
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
D A + L+ LGY+ DII+ +FR+ K++ M E+LKLEF+KE G+ MR GV S L
Sbjct: 259 DKAYKIMLHLWKLGYAAEDIISNVFRVCKSHTMPEYLKLEFIKEIGYTQMRTLQGVQSLL 318
Query: 313 QLCGLLAKLSI 323
Q+ GLL++L +
Sbjct: 319 QMAGLLSRLCM 329
>gi|392597749|gb|EIW87071.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 334
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 203/322 (63%), Positives = 267/322 (82%), Gaps = 1/322 (0%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
MA SS++++AY++PWVEKYRPT + D+VGN++ + RL +IA+DGN P++I++G PG GKT
Sbjct: 1 MAPSSAATAAYELPWVEKYRPTLLDDVVGNVETIERLKVIAKDGNCPHIIISGLPGIGKT 60
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TSI LAH+LLG Y+E V+ELNASD+RGIDVVRNKIK FAQKKVTLPPG+HK+V+LDEA
Sbjct: 61 TSIHCLAHQLLGDAYKEGVLELNASDERGIDVVRNKIKSFAQKKVTLPPGRHKIVILDEA 120
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT GAQQALRRTMEIYSN+TRF LACN+S+KIIEPIQSRCAI+R+++L D E+L+RL+
Sbjct: 121 DSMTGGAQQALRRTMEIYSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDTEVLARLL 180
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+ +EE V Y +GL A+IFT +GDMRQA+NNLQ+T+SGF FV+ ENVFKVCDQPHP+ V
Sbjct: 181 EICKEENVQYNDDGLTALIFTCEGDMRQAINNLQSTHSGFGFVSGENVFKVCDQPHPVIV 240
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGF 299
+ ++R + + D A L +L+D GYS DI+ TLFR+ K + E+ E+ KLE++KE GF
Sbjct: 241 QAIIRACHKCEVDSALEKLHELWDQGYSAVDIVVTLFRVAKTFDELPEYTKLEYIKEIGF 300
Query: 300 AHMRICDGVGSYLQLCGLLAKL 321
HMR+ +GVG+ +QL GL+A+L
Sbjct: 301 THMRVLEGVGTLMQLAGLVARL 322
>gi|170084297|ref|XP_001873372.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650924|gb|EDR15164.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 341
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 203/320 (63%), Positives = 264/320 (82%), Gaps = 1/320 (0%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
+ S++ + Y++PWVEKYRPT + D+VGN D + RL +IARDGN P++I++G PG GKTTS
Sbjct: 10 APSAAETPYELPWVEKYRPTVLDDVVGNSDTIERLKVIARDGNCPHIIISGLPGIGKTTS 69
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
I LAH+LLG Y+E V+ELNASDDRGIDVVRNKIK FAQKKVTLPPG+HK+++LDEADS
Sbjct: 70 IHCLAHQLLGDAYKEGVLELNASDDRGIDVVRNKIKTFAQKKVTLPPGRHKIIILDEADS 129
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT GAQQALRRTMEI+SN+TRF LACN+S+KIIEPIQSRCAI+R+++L D+EIL RL+ +
Sbjct: 130 MTPGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDQEILKRLLEI 189
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
+ EKV Y +GL A+IFT++GDMRQA+NNLQ+TYSGF FV+ +NVFKVCDQPHP+ V+
Sbjct: 190 CEMEKVEYNDDGLTALIFTSEGDMRQAINNLQSTYSGFGFVSGDNVFKVCDQPHPIIVQA 249
Query: 243 MVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAH 301
+R L+G D A + QL++ GYS DI+ T+FR++K + EM E+ KLE++KE GF H
Sbjct: 250 TIRACLKGDIDGAIEKVNQLWEQGYSAVDIVVTIFRVVKIFDEMPEYTKLEYIKEIGFTH 309
Query: 302 MRICDGVGSYLQLCGLLAKL 321
MRI +GVG+ +QL GL+A+L
Sbjct: 310 MRILEGVGTLIQLAGLVARL 329
>gi|378730119|gb|EHY56578.1| replication factor C subunit 4 [Exophiala dermatitidis NIH/UT8656]
Length = 352
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 203/321 (63%), Positives = 264/321 (82%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A ++ ++ Y++PWVEKYRP + DIVGN + + RL IIA+DGNMP++I++G PG GKTT
Sbjct: 18 AGANGATPDYELPWVEKYRPVYLDDIVGNSETIERLKIIAKDGNMPHVIISGMPGIGKTT 77
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA LLG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+HK+V+LDEAD
Sbjct: 78 SILCLARTLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKIVILDEAD 137
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT+GAQQALRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+R+SRL+D +++ RL+
Sbjct: 138 SMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVQRLLQ 197
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+++ EKV Y +GL A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVF+V D PHP+ V+
Sbjct: 198 IIEAEKVQYSEDGLAALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPVKVQ 257
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
M++ EGK D A LK+L+DLGYS DII+T+FR+ K ++EH KLEF+KE GF
Sbjct: 258 AMIKACWEGKIDSAVDTLKELWDLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIKEIGFT 317
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI +GV S+LQL G LAKL
Sbjct: 318 HMRILEGVQSFLQLSGCLAKL 338
>gi|198426342|ref|XP_002130063.1| PREDICTED: similar to Replication factor C (activator 1) 2, 40kDa
[Ciona intestinalis]
Length = 336
Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust.
Identities = 202/319 (63%), Positives = 259/319 (81%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
+ SS+ AY++PWVEKYRPTK+ D+VGN V+RL + A +GN+PN+I+AGPPG GKTTS
Sbjct: 7 TESSAKPAYELPWVEKYRPTKLSDVVGNEATVSRLEVFANEGNVPNIIIAGPPGAGKTTS 66
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
I+ LA +LG +Y AV+ELNAS+DRGIDVVRNKIKMFAQKKVTLP GKHK+++LDEADS
Sbjct: 67 IMCLARTMLGASYDVAVLELNASNDRGIDVVRNKIKMFAQKKVTLPKGKHKIIILDEADS 126
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT+GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+S+LSDE+ILSRLM V
Sbjct: 127 MTSGAQQALRRTMEIYSKTTRFALACNQSDKIIEPIQSRCAVLRYSKLSDEQILSRLMEV 186
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
+ +E V Y GLEA++FTA GDMRQALNNLQ+T+ GF F+N +NVFKVCD+PHPL +K
Sbjct: 187 IDKEGVRYDDSGLEALLFTAQGDMRQALNNLQSTHQGFSFINSDNVFKVCDEPHPLLLKT 246
Query: 243 MVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHM 302
M+ + ++ D+A + L+ +GYSP DIIT +FR++K +++ E++KLEF+K HM
Sbjct: 247 MLDHCVKADLDEAYKTINHLWAMGYSPDDIITNIFRVLKTHDIPEYVKLEFIKLVAETHM 306
Query: 303 RICDGVGSYLQLCGLLAKL 321
RI GV S LQL L+A++
Sbjct: 307 RIVQGVNSLLQLSALVARM 325
>gi|449550911|gb|EMD41875.1| hypothetical protein CERSUDRAFT_102269 [Ceriporiopsis subvermispora
B]
Length = 346
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 203/321 (63%), Positives = 265/321 (82%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A+ ++S+ Y++PWVEKYRP K+ D+VGN + + RL IIARDGN P++I++G PG GKTT
Sbjct: 13 ANGNASNVPYELPWVEKYRPQKLDDVVGNTETIERLKIIARDGNCPHIIISGMPGIGKTT 72
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SI LAH+LLG Y+E V+ELNASD+RGIDVVRNKIK FAQKKVTLPPG+ K+V+LDEAD
Sbjct: 73 SIHCLAHQLLGDAYKEGVLELNASDERGIDVVRNKIKTFAQKKVTLPPGRQKIVILDEAD 132
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT+GAQQALRRTMEIY+N+TRFALACN+S+KIIEPIQSRCAI+R+++L D E+L RL+
Sbjct: 133 SMTSGAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCAILRYTKLRDTEVLQRLLE 192
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ Q E+V Y +GL A+IFTA+GDMRQA+NNLQ+T+SGF FV+ +NVFKVCDQPHP+ V+
Sbjct: 193 ICQAEQVKYNDDGLTALIFTAEGDMRQAINNLQSTHSGFGFVSGDNVFKVCDQPHPIVVQ 252
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
M+ L+G D A L +L+D GYS DI+ T+FR++K Y E+ E+ KLE++KE GF
Sbjct: 253 AMIGACLKGNIDGAMEKLNELWDQGYSAVDIVVTIFRVVKTYDEIPEYTKLEYIKEIGFT 312
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI +GVG+ +QL GL+++L
Sbjct: 313 HMRILEGVGTLVQLGGLMSRL 333
>gi|426201141|gb|EKV51064.1| hypothetical protein AGABI2DRAFT_189375 [Agaricus bisporus var.
bisporus H97]
Length = 341
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 201/321 (62%), Positives = 266/321 (82%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
+ ++++ AY++PWVEKYRP + D+VGN D + RL +IARDGN P+LI++G PG GKTT
Sbjct: 9 TNGNAATDAYELPWVEKYRPKVLDDVVGNSDTIERLKVIARDGNCPHLIISGLPGIGKTT 68
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SI LAH+LLG Y+E V+ELNASD+RGI+VVR KIK FAQKKVTLPPG+HK+V+LDEAD
Sbjct: 69 SIHCLAHQLLGDAYKEGVLELNASDERGIEVVRTKIKQFAQKKVTLPPGRHKIVILDEAD 128
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT GAQQALRRTMEI+SN+TRF LACN+S+KIIEPIQSRCAI+R+++L D+EIL RL+
Sbjct: 129 SMTPGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDQEILKRLLE 188
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ +EE V Y +GL A+IFT++GDMRQA+NNLQ+T+SGF FV+ +NVFK+CDQPHP+ V+
Sbjct: 189 ICEEEDVKYNDDGLTALIFTSEGDMRQAINNLQSTFSGFGFVSGDNVFKICDQPHPIVVQ 248
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
+R+ L+G D+A +K+L+D GYS DI+ TLFR++K + E+ E+ KLEF+KE GF
Sbjct: 249 AAIRSCLKGDVDEALGKIKELWDQGYSAVDIVVTLFRVVKTFDEVPEYTKLEFIKEIGFT 308
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI +GVG+ +QL GL+A+L
Sbjct: 309 HMRILEGVGTLVQLAGLVARL 329
>gi|47213597|emb|CAG07263.1| unnamed protein product [Tetraodon nigroviridis]
Length = 350
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 206/321 (64%), Positives = 264/321 (82%), Gaps = 2/321 (0%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
S S++ Y++PWVEKYRP K+ IVGN + V+RL + AR+GN+PN+I+AGPPGTGKTTS
Sbjct: 20 SGRSTAGTYELPWVEKYRPLKLDQIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTS 79
Query: 63 ILALAHELLGPNYREAVMELNASDDR--GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
IL LA LLG + ++AV+ELNAS+DR GIDVVRNKIKMFAQ+KVTLP G+HK+++LDEA
Sbjct: 80 ILCLARALLGASMKDAVLELNASNDRHRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEA 139
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT GAQQALRR MEIYS +TRFALACN S KIIEPIQSRCA++R+S+L+D +IL+RL
Sbjct: 140 DSMTDGAQQALRRIMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLTDGQILARLQ 199
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
VV++E + +GLEA+IFTA GDMRQALNNLQ+T SGF ++N ENVFKVCD+PHPL V
Sbjct: 200 DVVEKEGLSVSEDGLEAVIFTAQGDMRQALNNLQSTNSGFGYINSENVFKVCDEPHPLLV 259
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
K+M+ + ++G D+A ++ L+ LGYSP DII +FR+ K Y+MAE+LKLEF+KE G+
Sbjct: 260 KSMLGHCVDGNVDEAYKVVEHLWALGYSPEDIIGNIFRVCKTYQMAEYLKLEFVKEIGYT 319
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMR+ +GV S LQ+ GLLA+L
Sbjct: 320 HMRVAEGVNSLLQMAGLLARL 340
>gi|432959658|ref|XP_004086351.1| PREDICTED: replication factor C subunit 2-like [Oryzias latipes]
Length = 355
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 200/310 (64%), Positives = 260/310 (83%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
D+PWVEKYRP K+ +IVGN + V+RL + AR+GN+PN+I+AGPPGTGKTTSIL LA LL
Sbjct: 36 DLPWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALL 95
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT GAQQAL
Sbjct: 96 GSAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQAL 155
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR MEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +ILSRL V+++E++
Sbjct: 156 RRIMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYAKLTDGQILSRLQEVIEKERLSVS 215
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+GLEA+IFT+ GDMRQALNNLQ+T+SGF ++N ENVFKVCD+PHPL VK+M+ + ++G
Sbjct: 216 DDGLEAVIFTSQGDMRQALNNLQSTHSGFGYINSENVFKVCDEPHPLLVKSMLGHCVDGN 275
Query: 252 FDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
D+A ++ L+ LGYSP DII +FR+ K Y+MAE+LKLEF+KE G+ +MR+ +GV S
Sbjct: 276 IDEAYKVVEHLWGLGYSPEDIIGNIFRVCKTYQMAEYLKLEFIKEIGYTNMRVAEGVNSL 335
Query: 312 LQLCGLLAKL 321
LQ+ GLL +L
Sbjct: 336 LQMAGLLGRL 345
>gi|384501081|gb|EIE91572.1| hypothetical protein RO3G_16283 [Rhizopus delemar RA 99-880]
Length = 343
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/321 (63%), Positives = 265/321 (82%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
++SS++ + +PWVEKYRP + DIVGN +AV+RL IA+DGNMPNLIL G PG GKTT
Sbjct: 13 STSSNAEEDFILPWVEKYRPLYLKDIVGNEEAVSRLMTIAKDGNMPNLILTGMPGIGKTT 72
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SI+ LAHE+LG +Y++AV+ELNASDDRGIDV+R++IK FAQKKVTLPPG HK+++LDEAD
Sbjct: 73 SIVCLAHEMLGASYKDAVLELNASDDRGIDVIRSRIKTFAQKKVTLPPGMHKIIILDEAD 132
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT GAQQALRRTMEIYSN+TRFALACN S+KIIEPIQSR A++R+++L++EE+L RL+
Sbjct: 133 SMTGGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRTAVLRYTKLTNEEVLKRLLE 192
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ Q EKV Y EGLEA+IFTADGDMRQA+NNLQ+T+ GF++VN ENVFKVCDQPHP+ +
Sbjct: 193 ICQMEKVNYNDEGLEALIFTADGDMRQAINNLQSTFYGFKYVNAENVFKVCDQPHPMVAQ 252
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFA 300
+++ E K D+A +++LY LGYS DIITT FR++++Y + E L+L+++KE G
Sbjct: 253 HIITCCSEVKLDEAVQCMEELYYLGYSALDIITTFFRMVRSYNALDEGLRLDYLKEIGLT 312
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI DG S LQL G++A+L
Sbjct: 313 HMRILDGHQSILQLSGMVARL 333
>gi|299471716|emb|CBN76937.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 332
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 211/323 (65%), Positives = 257/323 (79%), Gaps = 1/323 (0%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
+S++ +++PWVEKYRP K+ D+VGN + RL +IA +GNMPN+I+ GPPGTGKTTS+
Sbjct: 2 ASTTDDFEVPWVEKYRPNKLDDVVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVH 61
Query: 65 ALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
ALAH +LG Y AV+ELNASD RGI+VVRN IKMF QKKVTLPPG+HKV++LDEADSMT
Sbjct: 62 ALAHTMLGDAYANAVLELNASDSRGIEVVRNTIKMFTQKKVTLPPGQHKVIILDEADSMT 121
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
A AQQALRRTMEIYS++TRFALACNVS+KIIEPIQSRCAI+RFSRLS+EEIL RL V +
Sbjct: 122 ASAQQALRRTMEIYSHTTRFALACNVSTKIIEPIQSRCAILRFSRLSEEEILLRLQQVCE 181
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
E+V Y P+GLEAIIFTA+GDMR ALNNLQAT+SGF V+Q NVFKVCDQPHP V ++
Sbjct: 182 AEQVSYSPDGLEAIIFTAEGDMRNALNNLQATHSGFGHVDQANVFKVCDQPHPGVVLEIL 241
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKN-YEMAEHLKLEFMKEAGFAHMR 303
++ +EG A +K LYD GYS DII T+FR+ KN E+ E KLE +KE GF H+R
Sbjct: 242 KSCVEGDCAKASRRMKALYDTGYSSNDIIGTVFRVCKNQLEVNEGAKLEMIKEVGFTHVR 301
Query: 304 ICDGVGSYLQLCGLLAKLSIVRE 326
+ DGV S LQL G+ A+L V +
Sbjct: 302 VADGVNSLLQLMGMCARLCRVAQ 324
>gi|405121785|gb|AFR96553.1| activator 1 40 kDa subunit [Cryptococcus neoformans var. grubii
H99]
Length = 347
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 203/336 (60%), Positives = 267/336 (79%), Gaps = 14/336 (4%)
Query: 1 MASSSSSSS-------------AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMP 47
MAS SSS++ Y++PWVEKYRP + DIVGN D + RL +IA DGN+P
Sbjct: 1 MASRSSSNNKGISATAKHIDAEGYEMPWVEKYRPVLLDDIVGNSDTIDRLKVIAEDGNVP 60
Query: 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTL 107
++I++G PG GKTTSI LAH LLG Y+E V+ELNASD+RGIDVVRNKIK FAQ+KVTL
Sbjct: 61 HIIISGMPGIGKTTSIHCLAHALLGEAYKEGVLELNASDERGIDVVRNKIKSFAQRKVTL 120
Query: 108 PPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRF 167
PPG+HK+++LDEADSMTAGAQQALRRTMEIYSN+TRFALACN+S+KIIEPIQSRCAI+R+
Sbjct: 121 PPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRY 180
Query: 168 SRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQEN 227
S+L+D E+L RL + E + Y EGL A+IFTA+GDMRQA+NNLQ+T+SGF FVNQ+N
Sbjct: 181 SKLNDAEVLKRLKEICDMESIKYNDEGLAALIFTAEGDMRQAINNLQSTWSGFGFVNQDN 240
Query: 228 VFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMA 286
VFK+CDQPHP+ ++ M+++ GK D+A + + L+D GYS DI+ T+FR++K E+
Sbjct: 241 VFKICDQPHPIVIRQMIKDCQHGKIDEALARINALWDQGYSAVDIVVTVFRVVKGMEELP 300
Query: 287 EHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLS 322
E+LKLEF++E G+ HMR+ +GVG+ +QL ++A+L+
Sbjct: 301 EYLKLEFIREIGWTHMRVLEGVGTLVQLGAMIARLT 336
>gi|409083800|gb|EKM84157.1| hypothetical protein AGABI1DRAFT_110722 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 341
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 200/321 (62%), Positives = 265/321 (82%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
+ ++++ Y++PWVEKYRP + D+VGN D + RL +IARDGN P+LI++G PG GKTT
Sbjct: 9 TNGNAATDPYELPWVEKYRPKVLDDVVGNSDTIERLKVIARDGNCPHLIISGLPGIGKTT 68
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SI LAH+LLG Y+E V+ELNASD+RGI+VVR KIK FAQKKVTLPPG+HK+V+LDEAD
Sbjct: 69 SIHCLAHQLLGDAYKEGVLELNASDERGIEVVRTKIKQFAQKKVTLPPGRHKIVILDEAD 128
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT GAQQALRRTMEI+SN+TRF LACN+S+KIIEPIQSRCAI+R+++L D+EIL RL+
Sbjct: 129 SMTPGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDQEILKRLLE 188
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ +EE V Y +GL A+IFT++GDMRQA+NNLQ+T+SGF FV+ +NVFK+CDQPHP+ V+
Sbjct: 189 ICEEEDVKYNDDGLTALIFTSEGDMRQAINNLQSTFSGFGFVSGDNVFKICDQPHPIVVQ 248
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
+R+ L+G D+A +K+L+D GYS DI+ TLFR++K + E+ E+ KLEF+KE GF
Sbjct: 249 AAIRSCLKGDVDEALGKIKELWDQGYSAVDIVVTLFRVVKTFDEVPEYTKLEFIKEIGFT 308
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI +GVG+ +QL GL+A+L
Sbjct: 309 HMRILEGVGTLVQLAGLVARL 329
>gi|58269654|ref|XP_571983.1| Activator 1 40 kDa subunit [Cryptococcus neoformans var. neoformans
JEC21]
gi|134114003|ref|XP_774249.1| hypothetical protein CNBG2300 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256884|gb|EAL19602.1| hypothetical protein CNBG2300 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228219|gb|AAW44676.1| Activator 1 40 kDa subunit, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 347
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/336 (60%), Positives = 267/336 (79%), Gaps = 14/336 (4%)
Query: 1 MASSSSSSS-------------AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMP 47
MAS SSS++ Y++PWVEKYRP + DIVGN D V RL +IA DGN+P
Sbjct: 1 MASGSSSNNKLISATAKHTDAEGYEMPWVEKYRPVLLDDIVGNSDTVDRLKVIAEDGNVP 60
Query: 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTL 107
++I++G PG GKTTSI LAH LLG Y+E V+ELNASD+RGIDVVRNKIK FAQ+KVTL
Sbjct: 61 HIIISGMPGIGKTTSIHCLAHALLGEAYKEGVLELNASDERGIDVVRNKIKSFAQRKVTL 120
Query: 108 PPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRF 167
PPG+HK+++LDEADSMTAGAQQALRRTMEIYSN+TRFALACN+S+KIIEPIQSRCAI+R+
Sbjct: 121 PPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRY 180
Query: 168 SRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQEN 227
S+L+D E+L RL + E + + EGL A+IFTA+GDMRQA+NNLQ+T+SGF FVNQ+N
Sbjct: 181 SKLNDAEVLKRLKEICDMESIKHNDEGLAALIFTAEGDMRQAINNLQSTWSGFGFVNQDN 240
Query: 228 VFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMA 286
VFK+CDQPHP+ ++ M+++ GK D+A + + L+D GYS DI+ T+FR++K E+
Sbjct: 241 VFKICDQPHPIVIRQMIKDCQHGKIDEALARVNALWDQGYSAVDIVVTVFRVVKGMEELP 300
Query: 287 EHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLS 322
E+LKLEF++E G+ HMR+ +GVG+ +QL ++A+LS
Sbjct: 301 EYLKLEFIREIGWTHMRVLEGVGTLVQLGAMIARLS 336
>gi|393244589|gb|EJD52101.1| replication factor C subunit 4 [Auricularia delicata TFB-10046 SS5]
Length = 340
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 204/309 (66%), Positives = 257/309 (83%), Gaps = 1/309 (0%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP K+ D+VGN D + RL +IAR+GN P++I++G PG GKTTSI LAHELLG
Sbjct: 20 PWVEKYRPLKLDDVVGNKDTIDRLKVIAREGNCPHIIISGLPGIGKTTSIHCLAHELLGD 79
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
Y+E V+ELNASD+RGIDVVRNKIKMFAQKKVTLP G+HK V+LDEADSMT+GAQQALRR
Sbjct: 80 AYKEGVLELNASDERGIDVVRNKIKMFAQKKVTLPKGRHKFVILDEADSMTSGAQQALRR 139
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
TMEIYSN+TRFALACN S+KIIEPIQSRCAI+R+++L +EEI++RL+ + +EE V Y +
Sbjct: 140 TMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYAKLRNEEIVARLLEICKEESVTYNQD 199
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
G+EA++FTA+GDMRQA+NNLQ+T+SGF FVN NVFKVCDQPHP V+ M+R+ EG +
Sbjct: 200 GIEALVFTAEGDMRQAINNLQSTFSGFGFVNAANVFKVCDQPHPTMVQKMMRSCKEGNIN 259
Query: 254 DACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
DA L L+ GYS DI+ T+FR++K + E+ E+LKLEF+KE GF HM+I +GVG+ +
Sbjct: 260 DAMDHLTALWRQGYSAVDIVVTIFRVVKVFDELPEYLKLEFIKEIGFTHMKILEGVGTLV 319
Query: 313 QLCGLLAKL 321
QL GLLA+L
Sbjct: 320 QLGGLLARL 328
>gi|321261085|ref|XP_003195262.1| subunit of heteropentameric Replication factor C (RF-C); Rfc3p
[Cryptococcus gattii WM276]
gi|317461735|gb|ADV23475.1| Subunit of heteropentameric Replication factor C (RF-C), putative;
Rfc3p [Cryptococcus gattii WM276]
Length = 347
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 199/321 (61%), Positives = 262/321 (81%), Gaps = 1/321 (0%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
+ + + Y++PWVEKYRP + DIVGN D V RL +IA DGN+P++I++G PG GKTTS
Sbjct: 16 AKHTDAEGYEMPWVEKYRPVLLDDIVGNSDTVERLKVIAEDGNLPHIIISGMPGIGKTTS 75
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
I LAH LLG Y+E V+ELNASD+RGIDVVRNKIK FAQ+KVTLPPG+HK+++LDEADS
Sbjct: 76 IHCLAHALLGEAYKEGVLELNASDERGIDVVRNKIKSFAQRKVTLPPGRHKIIILDEADS 135
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MTAGAQQALRRTMEIYSN+TRFALACN+S+KIIEPIQSRCAI+R+S+L+D E+L RL +
Sbjct: 136 MTAGAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRYSKLNDAEVLKRLKEI 195
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
E V Y EGL A+IFTA+GDMRQA+NNLQ+T+SGF FV+Q+NVFK+CDQPHP+ ++
Sbjct: 196 CDMESVKYNDEGLAALIFTAEGDMRQAINNLQSTWSGFGFVSQDNVFKICDQPHPIVIRQ 255
Query: 243 MVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAH 301
M+++ GK D+A + + L+D GYS DI+ T+FR++K E+ E+LKLEF++E G+ H
Sbjct: 256 MIKDCQYGKIDEALARVNALWDQGYSAVDIVVTVFRVVKGMEELPEYLKLEFIREIGWTH 315
Query: 302 MRICDGVGSYLQLCGLLAKLS 322
MRI +GVG+ +QL ++A+L+
Sbjct: 316 MRILEGVGTLVQLGAMIARLN 336
>gi|346466437|gb|AEO33063.1| hypothetical protein [Amblyomma maculatum]
Length = 377
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 199/318 (62%), Positives = 257/318 (80%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
IPWVEKYRP K +IVGN + +ARL I +R+GN+PN+IL+GPPG GKTT+IL LA LLG
Sbjct: 59 IPWVEKYRPAKFSEIVGNEETIARLEIFSREGNVPNVILSGPPGVGKTTTILCLARILLG 118
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
P++REAV+ELNAS+DRGIDVVRNKIKMFAQKKVTLPPGKHK+++LDEADSMT GAQQALR
Sbjct: 119 PSFREAVLELNASNDRGIDVVRNKIKMFAQKKVTLPPGKHKIIILDEADSMTEGAQQALR 178
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTMEIYS +TRFALACN S KIIEPIQSRCA+VRFSRL+D +IL++L+ + + E YV
Sbjct: 179 RTMEIYSKTTRFALACNTSDKIIEPIQSRCAVVRFSRLTDAQILAKLLDICKREDASYVE 238
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GLEA++FTA GDMRQA+NNLQ+T GF VN +NVFKVCD+PHP +K+M+++ ++G+
Sbjct: 239 DGLEALVFTAQGDMRQAINNLQSTVVGFGHVNSQNVFKVCDEPHPEQIKDMLQHCVDGQL 298
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
D+A + ++ LGY+ DII +FR+ K+++M + +KLEF+KE G+ MR GV S L
Sbjct: 299 DNAYKIMLHMWKLGYAAEDIIVNIFRVCKSHDMRDDIKLEFIKEIGYTQMRTLQGVHSLL 358
Query: 313 QLCGLLAKLSIVRETAKA 330
Q+ GLLA+L + K+
Sbjct: 359 QMAGLLARLCMKSSQCKS 376
>gi|115655395|ref|XP_790650.2| PREDICTED: replication factor C subunit 2-like [Strongylocentrotus
purpuratus]
Length = 352
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 196/320 (61%), Positives = 257/320 (80%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A S S++Y++PWVEKYRPT + D+VGN + V+RL + +R+GN+PN+I+AGPPGTGKTT
Sbjct: 22 AGGSGKSASYEMPWVEKYRPTSLSDVVGNEETVSRLEVFSREGNVPNVIIAGPPGTGKTT 81
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA +LG ++++AV+E+NAS++RGIDVVRNKIKMFAQKKVTLP G+HK+++LDEAD
Sbjct: 82 SILCLARTMLGASFKDAVLEMNASNERGIDVVRNKIKMFAQKKVTLPKGRHKIIILDEAD 141
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT AQQA+RRTME++S +TRFALACN S KIIEPIQSRCA++R+SRLSD +IL RL+
Sbjct: 142 SMTGAAQQAMRRTMEVFSKTTRFALACNASDKIIEPIQSRCAVLRYSRLSDSQILKRLLE 201
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ E V + +GLEAII+TA GDMRQA+NNLQ+TY+GF + ENVFKVCD+PHP +K
Sbjct: 202 ICAAENVDHAEDGLEAIIYTAQGDMRQAINNLQSTYAGFGSITSENVFKVCDEPHPQLIK 261
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAH 301
+M+ + +E D A + + +GYS DIIT +FR K ++MAE++KLEF+KE G H
Sbjct: 262 SMLDHCVEADIDKAYEIMHHMSHMGYSADDIITNIFRSCKTHQMAEYVKLEFIKEIGMTH 321
Query: 302 MRICDGVGSYLQLCGLLAKL 321
MRI +GV S LQL GLLA+L
Sbjct: 322 MRIAEGVNSILQLSGLLARL 341
>gi|402219931|gb|EJU00004.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 343
Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust.
Identities = 199/322 (61%), Positives = 260/322 (80%), Gaps = 1/322 (0%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+A+ ++ Y++PWVEKYRP + D+VGN D + RL +IARDGN P++I++G PG GKT
Sbjct: 10 VANGKATEPGYEMPWVEKYRPRVLDDVVGNTDTIDRLKVIARDGNCPHIIISGMPGIGKT 69
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TSI LAH LLG Y+E V+ELNASD+RGIDVVRNKIK FAQKKVTLPPG+HK+++LDEA
Sbjct: 70 TSIHCLAHALLGDAYKEGVLELNASDERGIDVVRNKIKTFAQKKVTLPPGRHKIIILDEA 129
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMTAGAQQALRRTMEIYSN+TRFALACN S+KIIEPIQSRCAI+R+S+L D+E+L RL+
Sbjct: 130 DSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSKLRDQEVLKRLL 189
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+ + EKV Y EGL A+IFTA+GDMRQA+NN+Q+T+SGF FVN +NVFKVCDQPHP+ +
Sbjct: 190 EICEAEKVKYNDEGLTALIFTAEGDMRQAINNIQSTWSGFGFVNGDNVFKVCDQPHPVLI 249
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGF 299
+ M+R+ +G L +L+ GYS DI+ TLFR+ K + E+ E+ KLE+++E G+
Sbjct: 250 QAMLRSCHKGDVQGTMDKLDELWGQGYSAVDIVVTLFRVTKTFNELQEYSKLEYIREIGW 309
Query: 300 AHMRICDGVGSYLQLCGLLAKL 321
HMR+ +GVG+ +QL GL+A+L
Sbjct: 310 THMRVLEGVGTKMQLAGLVARL 331
>gi|389751171|gb|EIM92244.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 343
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 201/320 (62%), Positives = 261/320 (81%), Gaps = 1/320 (0%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
+++ S Y++PWVEKYRP + D+VGN D + RL +IARDGN+P+LI++G PG GKTTS
Sbjct: 12 ATNGSDIPYELPWVEKYRPNILDDVVGNSDTIDRLKVIARDGNVPHLIISGMPGIGKTTS 71
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
I LAH+LLG Y+E V+ELNASD+RGIDVVRNKIK FAQKKVTLPPG+HK+V+LDEADS
Sbjct: 72 IHCLAHQLLGDAYKEGVLELNASDERGIDVVRNKIKAFAQKKVTLPPGRHKIVILDEADS 131
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MTAGAQQALRRTMEI+SN+TRF LACN+S+KIIEPIQSRCAI+R+++L D EIL RL+ +
Sbjct: 132 MTAGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDAEILKRLLEI 191
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
EKV Y +GL A+IFT++GDMRQA+NNLQ+T+SGF FV+ +NVFKVCDQPHP+ V+
Sbjct: 192 CDIEKVEYNDDGLTALIFTSEGDMRQAINNLQSTWSGFGFVSSDNVFKVCDQPHPIIVQT 251
Query: 243 MVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAH 301
++R ++ D A L +L+ GYS DII T+FR++K + E+ E+ KLE++KE GF H
Sbjct: 252 IIRACMKSNVDLAMEKLSELWGQGYSAVDIIVTIFRVVKTFDELPEYTKLEYIKEIGFTH 311
Query: 302 MRICDGVGSYLQLCGLLAKL 321
MRI +GVG+ +QL GL+A+L
Sbjct: 312 MRILEGVGTLIQLAGLIARL 331
>gi|340522843|gb|EGR53076.1| replication factor C subunit 4 [Trichoderma reesei QM6a]
Length = 357
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 196/322 (60%), Positives = 267/322 (82%), Gaps = 1/322 (0%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+A+SS+ S Y++PWVEKYRP + D+VGN + + RL IIA++GNMP++I++G PG GKT
Sbjct: 21 LAASSNGSPNYELPWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKT 80
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TS+L LA +LLG +Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+HK+V+LDEA
Sbjct: 81 TSVLCLARQLLGESYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEA 140
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT+GAQQALRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+R+++L+DE+++ RL+
Sbjct: 141 DSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDEQVVKRLL 200
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+++ EKV Y +GL A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVFKV D PHP+ V
Sbjct: 201 QIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFKVVDSPHPIKV 260
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGF 299
+ M++ EG D A L++L+DLGYS DII+T+F++ K ++EH KLEF+KE GF
Sbjct: 261 QAMLKACYEGNVDSALDTLRELWDLGYSSHDIISTMFKVTKTMPTLSEHSKLEFIKEIGF 320
Query: 300 AHMRICDGVGSYLQLCGLLAKL 321
HM+I +GV + LQL G +A+L
Sbjct: 321 THMKILEGVQTLLQLSGCVARL 342
>gi|328855833|gb|EGG04957.1| hypothetical protein MELLADRAFT_72257 [Melampsora larici-populina
98AG31]
Length = 349
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 202/320 (63%), Positives = 256/320 (80%), Gaps = 1/320 (0%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
SS S+ DIPWVEKYRP + DI GN++ + RL +IARDGN P++I++G PG GKTTS
Sbjct: 17 SSGKKKSSEDIPWVEKYRPIILDDITGNVETIERLKVIARDGNCPHIIISGAPGIGKTTS 76
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
IL LAH LLG +Y+E V+ELNASD+RGIDVVRNKIK FA KVTLPPG+HK+++LDEADS
Sbjct: 77 ILCLAHALLGDSYKEGVLELNASDERGIDVVRNKIKTFANTKVTLPPGRHKIIILDEADS 136
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT+GAQQALRRTMEIY+NSTRFALACN SSKIIEPIQSRCAI+R+ +LSD+EIL RL+ +
Sbjct: 137 MTSGAQQALRRTMEIYANSTRFALACNFSSKIIEPIQSRCAILRYGKLSDQEILKRLVEI 196
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
E V Y EGL AIIFTA+GDMRQA+NNLQ+T SGF FV+ E VFKVCDQPHP+ +K
Sbjct: 197 CDAENVKYANEGLAAIIFTAEGDMRQAINNLQSTVSGFEFVSSEAVFKVCDQPHPIVIKQ 256
Query: 243 MVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAH 301
++ +G+ A L +L+ GYS DI+TTL +++K+ + MAE++KLEF+KE G+ H
Sbjct: 257 LLAACEKGEVQTALESLDELWTQGYSAIDIVTTLSKVVKSMDKMAEYIKLEFIKEIGYTH 316
Query: 302 MRICDGVGSYLQLCGLLAKL 321
MRI +GV + +QL GL+++L
Sbjct: 317 MRILEGVSTIVQLGGLISRL 336
>gi|321454581|gb|EFX65746.1| hypothetical protein DAPPUDRAFT_303531 [Daphnia pulex]
Length = 343
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 196/319 (61%), Positives = 258/319 (80%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
SS S ++PWVEKYRPT +IVGN DAV RL + AR+GN PN+I+AGPPG GKTT+
Sbjct: 13 SSKISGRKDNMPWVEKYRPTTFGEIVGNEDAVGRLEVFAREGNTPNIIIAGPPGVGKTTT 72
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
IL LA LLGPNY+EAV+ELNAS++RGIDVVRNKIKMFAQ+KVTLP G+ K+V+LDEADS
Sbjct: 73 ILCLARTLLGPNYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPKGRQKIVILDEADS 132
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT GAQQALRRTME++S +TRFALACN S KIIEPIQSRCA++R+ +L+D +IL +++ V
Sbjct: 133 MTEGAQQALRRTMELFSKTTRFALACNTSDKIIEPIQSRCAMIRYGKLTDAQILQKMIEV 192
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
+ EKV + +GLEAI+FTA GD+RQ LNNLQ+T GF VN ENVFKVCD+PHP+ +K+
Sbjct: 193 CKLEKVSHTDDGLEAIVFTAQGDLRQGLNNLQSTVQGFDHVNSENVFKVCDEPHPMLIKD 252
Query: 243 MVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHM 302
M+ + ++GK D+A + + LY+LGY+ DII+++FR+ +N+ + E++ LEF++E G HM
Sbjct: 253 MIDHCVKGKIDEAYTIMSHLYELGYAAEDIISSVFRVCRNHTIPEYIMLEFIQEIGLTHM 312
Query: 303 RICDGVGSYLQLCGLLAKL 321
+I G+GS LQ+ GLLA+L
Sbjct: 313 KIAQGMGSLLQMSGLLARL 331
>gi|409051889|gb|EKM61365.1| hypothetical protein PHACADRAFT_111883 [Phanerochaete carnosa
HHB-10118-sp]
Length = 342
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 197/321 (61%), Positives = 265/321 (82%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A+ +++S Y++PWVEKYRP + D+VGN + + RL ++ARDGN P++IL+G PG GKTT
Sbjct: 10 ANGTAASLPYELPWVEKYRPKTLDDVVGNSETIERLKVVARDGNCPHIILSGLPGIGKTT 69
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SI LAH+LLG Y+E V+ELNASD+RGIDVVRNK+K FAQKKVTLPPG+HK+V+LDEAD
Sbjct: 70 SIHCLAHQLLGDAYKEGVLELNASDERGIDVVRNKVKAFAQKKVTLPPGRHKIVILDEAD 129
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT GAQQALRRTMEI++N+TRFALACN+S+KIIEPIQSRCAI+R+++L D E+L RL+
Sbjct: 130 SMTPGAQQALRRTMEIFANTTRFALACNMSNKIIEPIQSRCAILRYAKLRDAEVLRRLLE 189
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ + E V Y +GL A+IFTA+GDMRQA+NNLQ+T+SGF FV+ +NVFKVCDQPHP+ V+
Sbjct: 190 ICEMEGVKYNDDGLTALIFTAEGDMRQAINNLQSTFSGFGFVSADNVFKVCDQPHPVVVQ 249
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
M+R+ L+G ++A L +L++ GYS DI+ T+FR++K + E+ E+ KLE++KE GF
Sbjct: 250 AMIRSCLKGDVENAMEKLNELWNHGYSAVDIVVTIFRVVKTFDEIPEYTKLEYIKEIGFT 309
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI +GV + +QL GL+A+L
Sbjct: 310 HMRILEGVSTLIQLGGLMARL 330
>gi|427781667|gb|JAA56285.1| Putative replication factor c activator 1 2 [Rhipicephalus
pulchellus]
Length = 337
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 198/318 (62%), Positives = 254/318 (79%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
IPWVEKYRP K +IVGN + +ARL + +R+GN+PN+IL+GPPG GKTT+IL LA LLG
Sbjct: 19 IPWVEKYRPVKFTEIVGNEETIARLEVFSREGNVPNVILSGPPGVGKTTTILCLARILLG 78
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
P +REAV+ELNAS+DRGIDVVRNKIKMFAQKKVTLPPGKHK+++LDEADSMT GAQQALR
Sbjct: 79 PAFREAVLELNASNDRGIDVVRNKIKMFAQKKVTLPPGKHKIIILDEADSMTEGAQQALR 138
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTMEIYS +TRFALACN S KIIEPIQSRCA+VRFSRL+D ++L++L+ V Q E Y
Sbjct: 139 RTMEIYSKTTRFALACNTSDKIIEPIQSRCAVVRFSRLTDAQVLAKLLDVCQRENASYSE 198
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GLEA++FTA GDMRQA+NNLQ+T GF VN +NVFKVCD+PHP +K+M++ ++G+
Sbjct: 199 DGLEALVFTAQGDMRQAINNLQSTVVGFGHVNSQNVFKVCDEPHPEQIKDMLQYCVDGQL 258
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
D+A + ++ LGY+ DII +FR+ K++++ E +KLEF+KE G+ MR GV S L
Sbjct: 259 DNAYKIMLHMWKLGYAAEDIIVNVFRVCKSHDIREDIKLEFIKEIGYTQMRTLQGVHSLL 318
Query: 313 QLCGLLAKLSIVRETAKA 330
Q+ GLLA+L + K+
Sbjct: 319 QMAGLLARLCLKSRQCKS 336
>gi|393218168|gb|EJD03656.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 338
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 200/326 (61%), Positives = 264/326 (80%), Gaps = 5/326 (1%)
Query: 1 MASSSSSSSA----YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPG 56
MA S +A Y++PWVEKYRP + D+VGN + + RL +IARDGN P++I++G PG
Sbjct: 1 MAISRGKQAANEIPYELPWVEKYRPQTLDDVVGNSETIERLKVIARDGNCPHIIISGLPG 60
Query: 57 TGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVV 116
GKTTSI LAH++LG Y++ V+ELNASD+RGIDVVRNKIK FAQKKVTLPPG+HK+V+
Sbjct: 61 IGKTTSIHCLAHQMLGEAYKDGVLELNASDERGIDVVRNKIKAFAQKKVTLPPGRHKIVI 120
Query: 117 LDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEIL 176
LDEADSMT+GAQQALRRTMEIYSN+TRFALACN+S+KIIEPIQSRCAI+R+++L D+EIL
Sbjct: 121 LDEADSMTSGAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRYAKLRDQEIL 180
Query: 177 SRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPH 236
RL+ + + E+V Y +GL A+IFT++GDMRQA+NNLQ+T+SGF FV+ +NVFKVCDQPH
Sbjct: 181 KRLLEICEMEQVQYNDDGLTALIFTSEGDMRQAINNLQSTHSGFGFVSGDNVFKVCDQPH 240
Query: 237 PLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMK 295
P+ V+ M+R ++G + L +L+D GYS DI+ T+FR++K + E+ E+ KLE++K
Sbjct: 241 PILVQAMIRACMKGDINTTMEKLTELWDQGYSAVDIVVTIFRVVKTFDELPEYTKLEYIK 300
Query: 296 EAGFAHMRICDGVGSYLQLCGLLAKL 321
E GF HMRI +GVG+ +QL GL A+L
Sbjct: 301 EIGFTHMRILEGVGTLVQLGGLAARL 326
>gi|398390788|ref|XP_003848854.1| replication factor C subunit 4 [Zymoseptoria tritici IPO323]
gi|339468730|gb|EGP83830.1| hypothetical protein MYCGRDRAFT_76271 [Zymoseptoria tritici IPO323]
Length = 351
Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust.
Identities = 197/321 (61%), Positives = 262/321 (81%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A++ + + Y++PWVEKYRP + DIVGN + + RL IIA+DGNMP++I++G PG GKTT
Sbjct: 17 ANTRGAPANYELPWVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTT 76
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
S+L LA +LLG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLP G+ K+V+LDEAD
Sbjct: 77 SVLCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRQKIVILDEAD 136
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT+GAQQALRRTMEIYS +TRFA ACN S+KIIEP+QSRCAI+R++RL+D +++ RL
Sbjct: 137 SMTSGAQQALRRTMEIYSGTTRFAFACNQSNKIIEPLQSRCAILRYARLTDGQVVKRLYQ 196
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ Q EKV Y +G+ A++F+A+GDMRQA+NNLQ+T++GF FVN +NVF+V D PHP+ V+
Sbjct: 197 ICQAEKVEYSDDGIAALVFSAEGDMRQAINNLQSTHAGFGFVNGDNVFRVVDSPHPIKVQ 256
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
M++N E K DDA GLK+L+DLGYS DII+T+F++ K ++EH KLEF++E GF
Sbjct: 257 AMIKNCQEQKIDDALDGLKELWDLGYSSHDIISTMFKVTKTIPSLSEHTKLEFIREIGFT 316
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI +G+ +YLQL G +AKL
Sbjct: 317 HMRILEGMQTYLQLAGCVAKL 337
>gi|340371349|ref|XP_003384208.1| PREDICTED: replication factor C subunit 2-like [Amphimedon
queenslandica]
Length = 346
Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust.
Identities = 202/312 (64%), Positives = 251/312 (80%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP K+ +IVGN D V RL + +++GN+PN+I+AGPPGTGKTTSIL LA LL
Sbjct: 31 NVPWVEKYRPQKLSEIVGNEDTVKRLEVFSKEGNVPNIIIAGPPGTGKTTSILCLARTLL 90
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G + ++AV+ELNAS+DRGIDVVRN+IKMFA +KVTLPPG+HK+V+LDEADSM+ GAQQAL
Sbjct: 91 GASMKDAVLELNASNDRGIDVVRNRIKMFAHQKVTLPPGRHKIVILDEADSMSDGAQQAL 150
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTMEIYS +TRFALACN S KIIEPIQSRCA++R+SRLSD +IL RL+ V +E +
Sbjct: 151 RRTMEIYSKTTRFALACNDSEKIIEPIQSRCAMLRYSRLSDAQILERLLEVCDKENLIRT 210
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+GLEAIIFTA GDMRQALNNLQ+T GF F+N ENVFKVCD+PHPL +K M+ +
Sbjct: 211 DDGLEAIIFTAQGDMRQALNNLQSTNDGFSFINSENVFKVCDEPHPLLIKEMLTHCNNSD 270
Query: 252 FDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
D A L L+D GYS DIIT++FR+ K + M+E+LKLE++KE G+ HMRI GV S
Sbjct: 271 IDSAFLILMTLWDKGYSAHDIITSIFRVCKTHSMSEYLKLEYLKEVGYTHMRIIKGVDSL 330
Query: 312 LQLCGLLAKLSI 323
LQL GLLA+L +
Sbjct: 331 LQLSGLLARLCM 342
>gi|225713814|gb|ACO12753.1| Replication factor C subunit 2 [Lepeophtheirus salmonis]
Length = 325
Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust.
Identities = 200/308 (64%), Positives = 250/308 (81%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PW+EKYRP DIVGN + V+RL A DGN PN+I++GPPG GKTT+IL LA LLG
Sbjct: 11 PWIEKYRPKTFDDIVGNSETVSRLTTFAHDGNAPNIIISGPPGVGKTTTILCLARALLGS 70
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
+++EAV+ELNAS++ GIDVVRNKIKMFAQ+KVTLPPG+HK++VLDEADSMT AQQALRR
Sbjct: 71 SFKEAVLELNASNEGGIDVVRNKIKMFAQQKVTLPPGRHKIIVLDEADSMTEAAQQALRR 130
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
TMEIYS++TRF LACN S K+IEPIQSRCA++R+S+LSD EIL++++ V ++E + Y +
Sbjct: 131 TMEIYSDTTRFCLACNASEKVIEPIQSRCAMLRYSKLSDAEILAQVLKVCEKEDISYTSD 190
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
GLEAI+FTA GDMRQALNNLQ+T+ GF ++ +NVFKVCD+PHPL VK+M+ N EGK D
Sbjct: 191 GLEAIVFTAQGDMRQALNNLQSTHDGFGQIDSKNVFKVCDEPHPLLVKDMLSNCTEGKID 250
Query: 254 DACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
+A L L+ LGYSP DII+ +FR+ K + MAE+LKLEF+KE G AHM+I G S LQ
Sbjct: 251 EAYKVLSHLWRLGYSPEDIISNIFRVCKTHPMAEYLKLEFIKEIGQAHMKIVHGSNSLLQ 310
Query: 314 LCGLLAKL 321
L GLLAKL
Sbjct: 311 LSGLLAKL 318
>gi|336377010|gb|EGO05345.1| hypothetical protein SERLA73DRAFT_174456 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390053|gb|EGO31196.1| hypothetical protein SERLADRAFT_455984 [Serpula lacrymans var.
lacrymans S7.9]
Length = 343
Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust.
Identities = 198/312 (63%), Positives = 258/312 (82%), Gaps = 1/312 (0%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
Y++PWVEKYRP + D+VGN+D + RL +IA+DGN P++I++G PG GKTTSI LAH+L
Sbjct: 20 YELPWVEKYRPQNLDDVVGNVDTIERLKVIAKDGNCPHIIISGLPGIGKTTSIHCLAHQL 79
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LG Y+E V+ELNASD+RGIDVVRNKIK FAQKKVTLPP +HK+V+LDEADSMT GAQQA
Sbjct: 80 LGDAYKEGVLELNASDERGIDVVRNKIKAFAQKKVTLPPARHKIVILDEADSMTPGAQQA 139
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEI+SN+TRF LACN+S+KIIEPIQSRCAI+R+++L D EIL RL+ + + EKV Y
Sbjct: 140 LRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDTEILKRLLEICEMEKVEY 199
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+GL A+IFT +GDMRQA+NNLQ+T+SGF FV+ ENVFKVCDQPHP+ V++++R L+G
Sbjct: 200 NDDGLTALIFTCEGDMRQAINNLQSTHSGFGFVSGENVFKVCDQPHPVIVQSIIRACLKG 259
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVG 309
D A L +L++ GYS DI+ T+FR++K + E+ E+ KLE++KE GF HMRI +GVG
Sbjct: 260 DIDGAMGKLNELWEQGYSAVDIVVTVFRVVKTFDELPEYTKLEYIKEIGFTHMRILEGVG 319
Query: 310 SYLQLCGLLAKL 321
+ +QL GL+A+L
Sbjct: 320 TIIQLGGLVARL 331
>gi|255712733|ref|XP_002552649.1| KLTH0C09900p [Lachancea thermotolerans]
gi|238934028|emb|CAR22211.1| KLTH0C09900p [Lachancea thermotolerans CBS 6340]
Length = 322
Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust.
Identities = 205/322 (63%), Positives = 260/322 (80%), Gaps = 4/322 (1%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
S+++ ++PWVEKYRP + DIVGN + + RL IA+DGNMP+LI++G PG GKTTS+
Sbjct: 2 SANALKLELPWVEKYRPHLLKDIVGNEETITRLQQIAQDGNMPHLIISGLPGIGKTTSVS 61
Query: 65 ALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
LAHELLG Y +AV+ELNASDDRGIDVVRN+IK FAQKK +LPPG+HK+V+LDEADSMT
Sbjct: 62 CLAHELLGNAYSQAVLELNASDDRGIDVVRNQIKQFAQKKCSLPPGRHKIVILDEADSMT 121
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AGAQQALRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+R+S+L D+++L RL+ V+Q
Sbjct: 122 AGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLQDDQVLRRLLEVIQ 181
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
E V Y +GLEAIIFTA+GDMRQALNNLQ+T +G+ VN ENVFK+ D PHPL VK M
Sbjct: 182 AENVQYTNDGLEAIIFTAEGDMRQALNNLQSTVAGYGLVNGENVFKIVDSPHPLIVKRM- 240
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMR 303
+L D++ + K+L++ GYS DI+TT FR+ KN E+ E ++LE ++E GFAHMR
Sbjct: 241 --LLAPSLDESLALFKELWNKGYSAVDIVTTCFRVTKNLDEIKEAVRLEMIREIGFAHMR 298
Query: 304 ICDGVGSYLQLCGLLAKLSIVR 325
I +GVG+YLQL G+LAK+S VR
Sbjct: 299 ILEGVGTYLQLAGMLAKISKVR 320
>gi|224013894|ref|XP_002296611.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
gi|220968963|gb|EED87307.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
Length = 336
Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust.
Identities = 206/311 (66%), Positives = 247/311 (79%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
YD PWVEKYRP + D+VGN D + RL IA DGNMPNLIL GPPGTGKTTS+ ALA +L
Sbjct: 16 YDTPWVEKYRPRNLDDVVGNEDTLVRLRAIAEDGNMPNLILCGPPGTGKTTSVHALARQL 75
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LG Y V+ELNASD RGIDVVRNKIK FA KV LP G+HK+++LDEADSMT+ AQQA
Sbjct: 76 LGSAYSNGVLELNASDSRGIDVVRNKIKGFAMNKVNLPVGRHKIIILDEADSMTSAAQQA 135
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIYSN+TRFALACNVS+KIIEPIQSR AI+R+SRL+DE+IL+RL V EE+V Y
Sbjct: 136 LRRTMEIYSNTTRFALACNVSTKIIEPIQSRAAILRYSRLTDEQILNRLKFVCGEEEVSY 195
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
GLEAIIFTA+GDMR ALNN+QAT SGF V+Q NVFKVCDQPHP V+ ++ + ++G
Sbjct: 196 DDGGLEAIIFTAEGDMRNALNNIQATVSGFEHVSQTNVFKVCDQPHPKTVRGILDSCIKG 255
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
A ++ L++ GYS +DII TLF++ K+YEM E LKLE+++E GF HMRI DGVG+
Sbjct: 256 DTTKAVVEVRNLWNTGYSCSDIIGTLFKVAKSYEMPEALKLEYLREIGFTHMRIADGVGT 315
Query: 311 YLQLCGLLAKL 321
LQL GL A+L
Sbjct: 316 LLQLLGLAARL 326
>gi|358401379|gb|EHK50685.1| hypothetical protein TRIATDRAFT_157714 [Trichoderma atroviride IMI
206040]
Length = 357
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 195/322 (60%), Positives = 266/322 (82%), Gaps = 1/322 (0%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+A+SS+ S Y++PWVEKYRP + D+VGN + + RL IIA++GNMP++I++G PG GKT
Sbjct: 21 LAASSNGSPNYELPWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKT 80
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TS+L LA +LLG +Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLP G+HK+V+LDEA
Sbjct: 81 TSVLCLARQLLGESYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRHKLVILDEA 140
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT+GAQQALRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+R+++L+DE+++ RLM
Sbjct: 141 DSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDEQVVKRLM 200
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+++ EKV Y +GL A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVFKV D PHP+ V
Sbjct: 201 QIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFKVVDSPHPIKV 260
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGF 299
+ M++ EG D A L++L+DLGYS DII+T+F++ K ++EH KLEF++E GF
Sbjct: 261 QAMLKACYEGNVDSALDTLRELWDLGYSSHDIISTMFKVTKTMPTLSEHSKLEFIREIGF 320
Query: 300 AHMRICDGVGSYLQLCGLLAKL 321
HM+I +GV + LQL G +A+L
Sbjct: 321 THMKILEGVQTLLQLSGCVARL 342
>gi|452986023|gb|EME85779.1| hypothetical protein MYCFIDRAFT_41166 [Pseudocercospora fijiensis
CIRAD86]
Length = 353
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 195/320 (60%), Positives = 263/320 (82%), Gaps = 1/320 (0%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
++ +S+ Y++PWVEKYRP + DIVGN + + RL IIA+DGNMP++I++G PG GKTTS
Sbjct: 19 NTHGTSTTYELPWVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTS 78
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
+L LA +LLG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLP G+ K+V+LDEADS
Sbjct: 79 VLCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRQKIVILDEADS 138
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT+GAQQALRRTMEIYS +TRFA ACN+S+KIIEP+QSRCAI+R+SRL+D +++ RL +
Sbjct: 139 MTSGAQQALRRTMEIYSGTTRFAFACNLSNKIIEPLQSRCAILRYSRLTDAQVVKRLYQI 198
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
+ EKV Y +G+ A++F+A+GDMRQA+NNLQ+T++GF FVN +NVF+V D PHP+ V+
Sbjct: 199 CEAEKVEYSDDGIAALVFSAEGDMRQAINNLQSTHAGFGFVNGDNVFRVVDSPHPIKVQA 258
Query: 243 MVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAH 301
M+++ EGK D+A LK+L++LGYS DII+T+F++ K ++EH KLEF++E GF H
Sbjct: 259 MIKSCQEGKIDEALDDLKELWNLGYSSHDIISTMFKVTKTIPSLSEHTKLEFIREIGFTH 318
Query: 302 MRICDGVGSYLQLCGLLAKL 321
MRI +GV +YLQL G +AKL
Sbjct: 319 MRILEGVQTYLQLAGCVAKL 338
>gi|389627572|ref|XP_003711439.1| replication factor C subunit 4 [Magnaporthe oryzae 70-15]
gi|351643771|gb|EHA51632.1| replication factor C subunit 4 [Magnaporthe oryzae 70-15]
gi|440468926|gb|ELQ38053.1| replication factor C subunit 4 [Magnaporthe oryzae Y34]
gi|440480570|gb|ELQ61229.1| replication factor C subunit 4 [Magnaporthe oryzae P131]
Length = 358
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 194/322 (60%), Positives = 266/322 (82%), Gaps = 1/322 (0%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
++++++ + Y++PWVEKYRP + D+VGN + + RL IIA+DGNMP++I++G PG GKT
Sbjct: 22 VSANANGAPNYELPWVEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKT 81
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TS+L LA +LLG +Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+HK+V+LDEA
Sbjct: 82 TSVLCLARQLLGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEA 141
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT+GAQQALRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+R++RL+D +++ RL+
Sbjct: 142 DSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKRLL 201
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+++ EKV Y +GL A++F+A+GDMRQA+NNLQ+TYSGF FV+ +NVFKV D PHP+ V
Sbjct: 202 QIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTYSGFGFVSGDNVFKVVDSPHPIKV 261
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGF 299
+ M++ EG D A L++L+ LGYS DII+T+F++ K + ++EH KLEF+KE GF
Sbjct: 262 QAMLKACHEGNVDSALDALRELWGLGYSSHDIISTMFKVTKTIQTLSEHTKLEFIKEIGF 321
Query: 300 AHMRICDGVGSYLQLCGLLAKL 321
AHM+I +GV + LQL G + +L
Sbjct: 322 AHMKILEGVQTLLQLSGCVVRL 343
>gi|449479599|ref|XP_002192072.2| PREDICTED: replication factor C subunit 2-like [Taeniopygia
guttata]
Length = 310
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 197/299 (65%), Positives = 250/299 (83%)
Query: 23 KVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMEL 82
K+ +IVGN D V+RL + A++GN+PN+I+AGPPGTGKTTSIL LA LLGP ++AV+EL
Sbjct: 2 KLSEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLEL 61
Query: 83 NASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNST 142
NAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT GAQQALRRTMEIYS +T
Sbjct: 62 NASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTT 121
Query: 143 RFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTA 202
RFALACN S KIIEPIQSRCA++R+++L+D +IL+RL+ +V++E V Y +GLEAIIFTA
Sbjct: 122 RFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLKIVEKEDVAYTDDGLEAIIFTA 181
Query: 203 DGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQL 262
GDMRQALNNLQ+TYSGF F+N ENVFKVCD+PHPL VK M+++ + D+A L L
Sbjct: 182 QGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCINANIDEAYKILAHL 241
Query: 263 YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKL 321
+ LGYSP D+I +FR+ K ++M E+LKLEF+KE G+ HM+I +GV S LQ+ GLLA+L
Sbjct: 242 WRLGYSPEDVIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARL 300
>gi|392575134|gb|EIW68268.1| hypothetical protein TREMEDRAFT_44679 [Tremella mesenterica DSM
1558]
Length = 346
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 197/315 (62%), Positives = 260/315 (82%), Gaps = 1/315 (0%)
Query: 8 SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
+ Y++PWVEKYRP + DIVGN D V RL +IA DGN+P++I++G PG GKTTSI LA
Sbjct: 20 AEGYEMPWVEKYRPVLLDDIVGNTDTVERLKVIAEDGNVPHIIISGMPGIGKTTSIHCLA 79
Query: 68 HELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGA 127
H LLG +Y+E V+ELNASD+RGIDVVRNKIK FAQ+KVTLPPG+HK+++LDEADSMTAGA
Sbjct: 80 HALLGESYKEGVLELNASDERGIDVVRNKIKSFAQRKVTLPPGRHKIIILDEADSMTAGA 139
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
QQALRRTMEIYSN+TRFALACN+S+KIIEPIQSRCAI+R+S+L D E+L RL + + E
Sbjct: 140 QQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRYSKLKDAEVLKRLKELCEMED 199
Query: 188 VPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNV 247
V + GL A+IFTA+GDMRQA+NNLQ+T+SGF FV+Q+NVFK+CDQPHP+ V++M++
Sbjct: 200 VKHNDAGLSALIFTAEGDMRQAINNLQSTHSGFGFVSQDNVFKICDQPHPIVVRHMIKAC 259
Query: 248 LEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICD 306
+G+ DDA + + +L+D GYS DI+TT+FR+ K E+ E LKL++++E G+ HMRI +
Sbjct: 260 QKGEIDDALARINELWDQGYSAVDIVTTVFRVTKGMEELPEVLKLDYIREIGWTHMRILE 319
Query: 307 GVGSYLQLCGLLAKL 321
GVG+ +QL ++A+L
Sbjct: 320 GVGTLVQLGAMVARL 334
>gi|358375659|dbj|GAA92238.1| activator 1 37 kDa subunit [Aspergillus kawachii IFO 4308]
Length = 352
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 203/321 (63%), Positives = 259/321 (80%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A ++ + Y++PWVEKYRP + DIVGN + V RL IIA+DGNMP++I++G PG GKTT
Sbjct: 17 AHTAGAPPDYELPWVEKYRPVFLDDIVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTT 76
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA +LLG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+HK+V+LDEAD
Sbjct: 77 SILCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEAD 136
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT+GAQQALRRTMEIYS++TRFA ACN S+KIIEPIQSRCAI+R++RL+D +I+ RL
Sbjct: 137 SMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDAQIVKRLKQ 196
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
V EKV + EG+ A++F+A+GDMRQA+NNLQ+T+SGF FV+ +NVF+V D PHP+ V+
Sbjct: 197 VCDAEKVEHNEEGIAALVFSAEGDMRQAINNLQSTWSGFGFVSGDNVFRVVDSPHPIKVQ 256
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
M++ EGK D A L +L+DLGYS DII+T+FR+ K ++EH KLEF++E GF
Sbjct: 257 AMIKACWEGKIDAALETLNELWDLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIREIGFT 316
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI DGV S LQL G +AKL
Sbjct: 317 HMRILDGVQSLLQLSGCVAKL 337
>gi|390604618|gb|EIN14009.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 342
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 196/320 (61%), Positives = 262/320 (81%), Gaps = 1/320 (0%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
+++ + AY++PWVEKYRP + D+VGN++ + RL +IARDGN P++I++G PG GKTTSI
Sbjct: 12 ATNGTVAYELPWVEKYRPKVLDDVVGNIETIERLKVIARDGNCPHIIISGMPGIGKTTSI 71
Query: 64 LALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM 123
LAH+LLG Y+E V+ELNASD+RGI+VVRNKIK FAQKKVTLPPG+HK+V+LDEADSM
Sbjct: 72 HCLAHQLLGNAYKEGVLELNASDERGIEVVRNKIKTFAQKKVTLPPGRHKIVILDEADSM 131
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
TAGAQQALRRTMEIY+N+TRF LACN+S+KIIEPIQSRCAI+R+S+L D E+L RL+ +
Sbjct: 132 TAGAQQALRRTMEIYANTTRFCLACNMSNKIIEPIQSRCAILRYSKLRDTELLKRLLEIC 191
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
+ EKV Y +GL A+IFT++GDMRQA+NNLQ+T+SGF FV+ +NVFKVCDQPHP+ V+ +
Sbjct: 192 ELEKVKYNDDGLTALIFTSEGDMRQAINNLQSTWSGFGFVSGDNVFKVCDQPHPITVQTI 251
Query: 244 VRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHM 302
+R + D A L L++ GYS DI+ T+FR++K ++ E+ +LE++KE GF HM
Sbjct: 252 IRACQKSDLDTAMEKLNDLWEQGYSAVDIVVTIFRVVKTMDDLPEYTELEYIKEIGFTHM 311
Query: 303 RICDGVGSYLQLCGLLAKLS 322
RI +GVG+ +QL GL+A+LS
Sbjct: 312 RILEGVGTIIQLGGLIARLS 331
>gi|45187984|ref|NP_984207.1| ADR111Wp [Ashbya gossypii ATCC 10895]
gi|44982768|gb|AAS52031.1| ADR111Wp [Ashbya gossypii ATCC 10895]
gi|374107422|gb|AEY96330.1| FADR111Wp [Ashbya gossypii FDAG1]
Length = 321
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 201/318 (63%), Positives = 257/318 (80%), Gaps = 4/318 (1%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
+S ++ ++PWVEKYRP + D+VGN + V RL IARDGNMP++I++G PG GKTTSI
Sbjct: 2 TSLATKLELPWVEKYRPKLLKDVVGNDETVERLQQIARDGNMPHMIISGLPGIGKTTSIH 61
Query: 65 ALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
LAHELLG Y +AV+ELNASDDRGIDVVRN+IK FAQKK TLPPGKHK+++LDEADSMT
Sbjct: 62 CLAHELLGDAYSQAVLELNASDDRGIDVVRNQIKQFAQKKCTLPPGKHKIIILDEADSMT 121
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
+GAQQALRRTME+YSN+TRFA ACN S+KIIEP+QSRCAI+R+S+LSDE++L RL +++
Sbjct: 122 SGAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLFEIIK 181
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
E V Y +GLEA+IFTA+GDMRQA+NNLQ+T +GF VN +NVFK+ D PHPL +K M
Sbjct: 182 AENVQYTNDGLEALIFTAEGDMRQAINNLQSTVAGFTLVNGDNVFKIVDSPHPLVIKKM- 240
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMR 303
+L D++ + L++L+ GYS DIITT FR++KN E+ E L+LE +KE GF HMR
Sbjct: 241 --LLSATLDESLNYLRELWGKGYSAVDIITTCFRVMKNLTEIKEPLRLEMIKEIGFTHMR 298
Query: 304 ICDGVGSYLQLCGLLAKL 321
I +GVG+YLQLCG LA++
Sbjct: 299 ILEGVGTYLQLCGALARI 316
>gi|322701219|gb|EFY92969.1| putative replication factor C [Metarhizium acridum CQMa 102]
Length = 357
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 195/313 (62%), Positives = 260/313 (83%), Gaps = 1/313 (0%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
Y++PWVEKYRP + D+VGN + + RL IIAR+GNMP++I++G PG GKTTS+L LA +L
Sbjct: 31 YELPWVEKYRPVFLDDVVGNTETIERLKIIAREGNMPHVIISGMPGIGKTTSVLCLARQL 90
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LG +YREAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+HK+V+LDEADSMT+GAQQA
Sbjct: 91 LGESYREAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQA 150
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+R+++LSD +++ RL+ +++ EKV Y
Sbjct: 151 LRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLSDAQVVKRLLQIIEAEKVEY 210
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+GL A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVFKV D PHP+ V+ M++ EG
Sbjct: 211 SDDGLAALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEG 270
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVG 309
D A L++L+DLGYS DII+T+F++ K ++EH KLEF+KE GF HM+I +GV
Sbjct: 271 NVDSALDTLRELWDLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGFTHMKILEGVQ 330
Query: 310 SYLQLCGLLAKLS 322
+ LQL G +A+LS
Sbjct: 331 TLLQLSGCVARLS 343
>gi|154276822|ref|XP_001539256.1| activator 1 37 kDa subunit [Ajellomyces capsulatus NAm1]
gi|150414329|gb|EDN09694.1| activator 1 37 kDa subunit [Ajellomyces capsulatus NAm1]
Length = 354
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 199/312 (63%), Positives = 256/312 (82%), Gaps = 1/312 (0%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
Y++PWVEKYRP + DIVGN + + RL IIAR+GNMP++I++G PG GKTTSIL LA ++
Sbjct: 26 YELPWVEKYRPVFLDDIVGNTETIERLKIIARNGNMPHVIISGMPGIGKTTSILCLARQM 85
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LG +Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLP G+HK+V+LDEADSMT+GAQQA
Sbjct: 86 LGNSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLVILDEADSMTSGAQQA 145
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIYS +TRFA ACN S+KIIEP+QSRCAI+R++RL+D +IL RL + + EKV Y
Sbjct: 146 LRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCAILRYARLTDGQILKRLTQICEAEKVKY 205
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+GLEA+IF+A+GDMRQA+NNLQ+T++GF FV+ ENVF+V D PHP+ V+ M++ EG
Sbjct: 206 SEDGLEALIFSAEGDMRQAINNLQSTWAGFGFVSGENVFRVVDSPHPVKVQAMIKACWEG 265
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVG 309
K D A L +L+DLGYS DII+T+FR+ K ++EH +LEF+KE GF HMRI +GV
Sbjct: 266 KIDAALDSLNELWDLGYSSHDIISTMFRVTKTMPTLSEHTRLEFIKEIGFTHMRILEGVQ 325
Query: 310 SYLQLCGLLAKL 321
+ +QL G LAKL
Sbjct: 326 TLVQLSGCLAKL 337
>gi|225554309|gb|EEH02609.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
gi|240277074|gb|EER40584.1| activator 1 37 kDa subunit [Ajellomyces capsulatus H143]
gi|325095015|gb|EGC48325.1| activator 1 37 kDa subunit [Ajellomyces capsulatus H88]
Length = 354
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 199/312 (63%), Positives = 256/312 (82%), Gaps = 1/312 (0%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
Y++PWVEKYRP + DIVGN + + RL IIAR+GNMP++I++G PG GKTTSIL LA ++
Sbjct: 26 YELPWVEKYRPVFLDDIVGNTETIERLKIIARNGNMPHVIISGMPGIGKTTSILCLARQM 85
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LG +Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLP G+HK+V+LDEADSMT+GAQQA
Sbjct: 86 LGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLVILDEADSMTSGAQQA 145
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIYS +TRFA ACN S+KIIEP+QSRCAI+R++RL+D +IL RL + + EKV Y
Sbjct: 146 LRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCAILRYARLTDGQILKRLTQICEAEKVKY 205
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+GLEA+IF+A+GDMRQA+NNLQ+T++GF FV+ ENVF+V D PHP+ V+ M++ EG
Sbjct: 206 SEDGLEALIFSAEGDMRQAINNLQSTWAGFGFVSGENVFRVVDSPHPVKVQAMIKACWEG 265
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVG 309
K D A L +L+DLGYS DII+T+FR+ K ++EH +LEF+KE GF HMRI +GV
Sbjct: 266 KIDAALDSLNELWDLGYSSHDIISTMFRVTKTMPTLSEHTRLEFIKEIGFTHMRILEGVQ 325
Query: 310 SYLQLCGLLAKL 321
+ +QL G LAKL
Sbjct: 326 TLVQLSGCLAKL 337
>gi|313217116|emb|CBY38291.1| unnamed protein product [Oikopleura dioica]
gi|313225063|emb|CBY20856.1| unnamed protein product [Oikopleura dioica]
Length = 326
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 200/322 (62%), Positives = 258/322 (80%)
Query: 8 SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
+ Y++PWVEKYRPT + DI GN + V RL + A++GN+PN+I+AGPPG GKTTSIL LA
Sbjct: 4 NKGYNLPWVEKYRPTFMSDIAGNQETVERLAVFAKEGNLPNIIIAGPPGCGKTTSILCLA 63
Query: 68 HELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGA 127
+LG ++ EAV+ELNAS+DRGIDVVRNKIKMFAQKK TLP GKHK+++LDEADSMT+GA
Sbjct: 64 RTMLGEHFNEAVLELNASNDRGIDVVRNKIKMFAQKKCTLPAGKHKIIILDEADSMTSGA 123
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
QQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++RFS+LSD ++L+R+ V++ E
Sbjct: 124 QQALRRTMEIYSKTTRFALACNNSEKIIEPIQSRCAVLRFSKLSDVQVLARITEVIKHEN 183
Query: 188 VPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNV 247
V Y +GLEAI+FTA GDMRQALNNLQAT+SG VN +NVFKVCD+PHPL + M+
Sbjct: 184 VDYDQKGLEAILFTAQGDMRQALNNLQATHSGLGVVNSDNVFKVCDEPHPLMISKMLDFC 243
Query: 248 LEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDG 307
LE K ++A ++QLY+ GY+ DIITT+FR+ K ++ E +KLE++K+ G AHMRI +G
Sbjct: 244 LERKTNEATGIIRQLYNYGYACEDIITTVFRVSKTHKSPELIKLEWIKQIGLAHMRIIEG 303
Query: 308 VGSYLQLCGLLAKLSIVRETAK 329
+ +QL GL++KL ++ AK
Sbjct: 304 TTTLVQLIGLVSKLILICHKAK 325
>gi|452846354|gb|EME48287.1| hypothetical protein DOTSEDRAFT_147627 [Dothistroma septosporum
NZE10]
Length = 352
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 194/321 (60%), Positives = 265/321 (82%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A++++SS+ Y++PWVEKYRP + DIVGN + + RL IIA+DGNMP++I++G PG GKTT
Sbjct: 17 ANATASSANYELPWVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTT 76
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
S+L LA +LLG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLP G+ K+V+LDEAD
Sbjct: 77 SVLCLARQLLGAAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRQKIVILDEAD 136
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT+GAQQALRRTMEIYS++TRFA ACN S+KIIEP+QSRCAI+R++RL+D +++ RL
Sbjct: 137 SMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDGQVVKRLYQ 196
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ + E V Y +G+ A++F+A+GDMRQA+NNLQ+T++GF FVN +NVF+V D PHP+ V+
Sbjct: 197 IAKAEGVEYSDDGIAALVFSAEGDMRQAINNLQSTHAGFGFVNGDNVFRVVDSPHPIKVQ 256
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
M+R+ + K D+A LK+L+DLGYS DII+T+F++ K+ ++EH KLEF++E GF
Sbjct: 257 GMIRSCQDSKVDEALDSLKELWDLGYSSHDIISTMFKVTKSIPSLSEHTKLEFIREIGFT 316
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI +G+ +YLQL G +AKL
Sbjct: 317 HMRILEGMQTYLQLAGCVAKL 337
>gi|302909278|ref|XP_003050037.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730974|gb|EEU44324.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 354
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 193/322 (59%), Positives = 266/322 (82%), Gaps = 1/322 (0%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+ +S++ +S+Y++PWVEKYRP + D+VGN + + RL IIA++GNMP++I++G PG GKT
Sbjct: 21 LTASTNGNSSYELPWVEKYRPIFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKT 80
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TS+L LA +LLG +Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLP G+HK+V+LDEA
Sbjct: 81 TSVLCLARQLLGESYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRHKLVILDEA 140
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT+GAQQALRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+R+++L+D +++ RLM
Sbjct: 141 DSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVVKRLM 200
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+++ EKV Y +GL A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVFKV D PHP+ V
Sbjct: 201 QIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFKVVDSPHPIKV 260
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGF 299
+ M++ EG D A L++L+DLGYS DII+T+FR+ K ++EH KLEF+KE GF
Sbjct: 261 QAMLKACYEGNVDSALDTLRELWDLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIKEIGF 320
Query: 300 AHMRICDGVGSYLQLCGLLAKL 321
HM++ +GV + LQL G +A+L
Sbjct: 321 THMKVLEGVQTLLQLSGCVARL 342
>gi|451994907|gb|EMD87376.1| hypothetical protein COCHEDRAFT_1144919 [Cochliobolus
heterostrophus C5]
Length = 353
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 194/319 (60%), Positives = 263/319 (82%), Gaps = 1/319 (0%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
+++ + Y++PWVEKYRP + D+VGN + + RL IIA+DGNMP++I++G PG GKTTSI
Sbjct: 20 NAAGGANYELPWVEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHMIISGMPGIGKTTSI 79
Query: 64 LALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM 123
L LAH+LLG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+ K+V+LDEADSM
Sbjct: 80 LCLAHQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRQKLVILDEADSM 139
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T+GAQQALRRTMEIYS +TRFA ACN S+KIIEP+QSRCAI+R++RL+D +++ R+M +
Sbjct: 140 TSGAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRRIMQIC 199
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
+ E V Y +G+ A++F+A+GDMRQA+NNLQ+T++GF FVN +NVFKV D PHP+ V++M
Sbjct: 200 EAEDVKYSDDGIAALVFSAEGDMRQAINNLQSTFAGFGFVNGDNVFKVVDSPHPIKVQSM 259
Query: 244 VRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHM 302
++ E + DDA + LK+L+DLGYS DII+T+F++ K + ++EH KLEF+KE GF HM
Sbjct: 260 IKACHEQRIDDALAALKELWDLGYSCHDIISTMFKVTKTIDTLSEHAKLEFIKEIGFTHM 319
Query: 303 RICDGVGSYLQLCGLLAKL 321
RI +GV + LQL G +A+L
Sbjct: 320 RILEGVQTLLQLSGCVARL 338
>gi|299756140|ref|XP_001829123.2| replication factor C subunit 4 [Coprinopsis cinerea okayama7#130]
gi|298411540|gb|EAU92758.2| replication factor C subunit 4 [Coprinopsis cinerea okayama7#130]
Length = 323
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 200/307 (65%), Positives = 256/307 (83%), Gaps = 1/307 (0%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY 75
VEKYRP + DIVGN D + RL +IARDGN P+LI++G PG GKTTSI LAH+LLG Y
Sbjct: 5 VEKYRPQVLDDIVGNTDTIERLKVIARDGNCPHLIISGMPGIGKTTSIHCLAHQLLGDAY 64
Query: 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTM 135
+E V+ELNASD+RGIDVVRNKIK FAQKKVTLPPG+HK+++LDEADSMT GAQQALRRTM
Sbjct: 65 KEGVLELNASDERGIDVVRNKIKAFAQKKVTLPPGRHKIIILDEADSMTPGAQQALRRTM 124
Query: 136 EIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGL 195
EI+SN+TRF LACN+S+KIIEPIQSRCAI+R+++L D+E+L RL+ + + EKV Y +GL
Sbjct: 125 EIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDQEVLKRLLEICEMEKVQYNDDGL 184
Query: 196 EAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDA 255
A+IFTA+GDMRQA+NNLQ+T+SGF FV+ +NVFKVCDQPHP+ V++M+R L+G+ D A
Sbjct: 185 TALIFTAEGDMRQAINNLQSTHSGFGFVSADNVFKVCDQPHPIVVQSMIRACLKGEIDPA 244
Query: 256 CSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVGSYLQL 314
L +L+D GYS DI+ TLFR++K + +M E+ KLE++KE GF HMRI +GVG+ +QL
Sbjct: 245 LEKLHELWDQGYSAVDIVVTLFRVVKTFDDMPEYTKLEYIKEIGFTHMRILEGVGTLIQL 304
Query: 315 CGLLAKL 321
GL+A+L
Sbjct: 305 AGLVARL 311
>gi|255931513|ref|XP_002557313.1| Pc12g04440 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581932|emb|CAP80071.1| Pc12g04440 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 352
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 199/321 (61%), Positives = 262/321 (81%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A+++ ++ Y++PWVEKYRP + DIVGN + V RL IIA+DGNMP++I++G PG GKTT
Sbjct: 17 ANTAGAAVDYELPWVEKYRPIFLDDIVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTT 76
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
S+L LA +LLG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLP G+HK+V+LDEAD
Sbjct: 77 SVLCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLVILDEAD 136
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMTAGAQQALRRTMEIYS++TRFA ACN S+KIIEP+QSRCAI+R++RL+D +++ RLM
Sbjct: 137 SMTAGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKRLMQ 196
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ + EKV + +G+ A++F+A+GDMRQA+NNLQ+T+SGF FV+ +NVF+V D PHP+ V+
Sbjct: 197 ICEAEKVQHSEDGIAALVFSAEGDMRQAINNLQSTWSGFGFVSGDNVFRVVDSPHPVKVQ 256
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
M++ EGK D A GL +L+ LGYS DII+T+FR+ K ++EH KLEF++E GF
Sbjct: 257 AMIKACWEGKVDVALEGLNELWTLGYSAHDIISTMFRVTKTIPTLSEHSKLEFIREIGFT 316
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI DGV S LQL G +AKL
Sbjct: 317 HMRILDGVQSLLQLSGCVAKL 337
>gi|358389695|gb|EHK27287.1| hypothetical protein TRIVIDRAFT_82171 [Trichoderma virens Gv29-8]
Length = 357
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 195/322 (60%), Positives = 265/322 (82%), Gaps = 1/322 (0%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+A+SS+ S Y++PWVEKYRP + D+VGN + + RL IIA++GNMP++I++G PG GKT
Sbjct: 21 LAASSNGSPNYELPWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKT 80
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TS+L LA +LLG +Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLP G+HK+V+LDEA
Sbjct: 81 TSVLCLARQLLGESYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRHKLVILDEA 140
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT+GAQQALRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+R+++L+DE+++ RLM
Sbjct: 141 DSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDEQVVKRLM 200
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+++ EKV Y +GL A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVFKV D PHP+ V
Sbjct: 201 QIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFKVVDSPHPIKV 260
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGF 299
+ M++ EG D A L++L+D GYS DII+T+F++ K ++EH KLEF+KE GF
Sbjct: 261 QAMLKACYEGNVDSALDTLRELWDKGYSSHDIISTMFKVTKTMPTLSEHSKLEFIKEIGF 320
Query: 300 AHMRICDGVGSYLQLCGLLAKL 321
HM+I +GV + LQL G +A+L
Sbjct: 321 THMKILEGVQTLLQLSGCVARL 342
>gi|400600989|gb|EJP68657.1| replication factor C [Beauveria bassiana ARSEF 2860]
Length = 355
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 193/318 (60%), Positives = 264/318 (83%), Gaps = 1/318 (0%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
++ S+ Y++PWVEKYRP + D+VGN + + RL IIA++GNMP++I++G PG GKTTS+L
Sbjct: 25 TNGSANYELPWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVL 84
Query: 65 ALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
LA ELLG +Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+HK+++LDEADSMT
Sbjct: 85 CLARELLGESYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLIILDEADSMT 144
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
+GAQQALRRTMEIYSN+TRFA ACN+S+KIIEP+QSRCAI+R+++L+D +++ RLM +++
Sbjct: 145 SGAQQALRRTMEIYSNTTRFAFACNMSNKIIEPLQSRCAILRYAKLTDAQVVKRLMQIIE 204
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EKV Y +GL A++F+A+GDMRQA+NNLQ+T+SGF FV+ +NVFKV D PHP+ V+ M+
Sbjct: 205 AEKVEYSDDGLAALVFSAEGDMRQAINNLQSTFSGFGFVSGDNVFKVVDSPHPIKVQAML 264
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMR 303
+ EG D A L++L+DLGYS DII+T+F++ K ++E+ KLEF+KE GF HM+
Sbjct: 265 KACYEGNIDSALDTLRELWDLGYSSHDIISTMFKVTKTIPTLSEYSKLEFIKEIGFTHMK 324
Query: 304 ICDGVGSYLQLCGLLAKL 321
I +GV + LQL G +A+L
Sbjct: 325 ILEGVQTLLQLSGCVARL 342
>gi|242218752|ref|XP_002475163.1| predicted protein [Postia placenta Mad-698-R]
gi|220725657|gb|EED79635.1| predicted protein [Postia placenta Mad-698-R]
Length = 332
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 197/320 (61%), Positives = 262/320 (81%), Gaps = 2/320 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A+ +S+ Y++PWVEKYRP + DIVGN + + RL +IA+DGN P++I++G PG GKTT
Sbjct: 12 ANGDTSTVPYELPWVEKYRPQVLDDIVGNAETIDRLKVIAKDGNCPHIIISGMPGIGKTT 71
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SI LAH+LLG Y+E V+ELNASD+RGIDVVRNKIK FAQKKVTLPPG+HK+V+LDEAD
Sbjct: 72 SIHCLAHQLLGDAYKEGVLELNASDERGIDVVRNKIKAFAQKKVTLPPGRHKIVILDEAD 131
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT GAQQALRRTMEIY+N+TRFALACN+S+KIIEPIQSRCAI+R+++L D EIL RL+
Sbjct: 132 SMTPGAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCAILRYAKLRDTEILKRLLE 191
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ + EKV Y +GL A+IFT++GDMRQA+NNLQ+T+SGF F++ +NVFKVCDQPHP+ V+
Sbjct: 192 ICEMEKVQYNDDGLTALIFTSEGDMRQAINNLQSTHSGFGFISGDNVFKVCDQPHPIIVQ 251
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAH 301
+++R ++ D A L +L+D GYS DI+ T+FR++K + E+ KLE++KE G+ H
Sbjct: 252 SIIRACIKSDIDGAMEKLNELWDQGYSAVDIVVTVFRVVKT--IPEYTKLEYIKEIGWTH 309
Query: 302 MRICDGVGSYLQLCGLLAKL 321
MRI +GVG+ +QL GL+A+L
Sbjct: 310 MRILEGVGTLIQLGGLMARL 329
>gi|156379406|ref|XP_001631448.1| predicted protein [Nematostella vectensis]
gi|156218489|gb|EDO39385.1| predicted protein [Nematostella vectensis]
Length = 401
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/353 (58%), Positives = 261/353 (73%), Gaps = 34/353 (9%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
S + +++PWVEKYRPTK+ +IVGN + V+RL + A+ GN+PN+I+AGPPGTGKTTS
Sbjct: 43 SEKKTKKGFELPWVEKYRPTKLHEIVGNEETVSRLEVFAQQGNVPNIIIAGPPGTGKTTS 102
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
IL LA LLG + ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADS
Sbjct: 103 ILCLARALLGVSLKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADS 162
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT GAQQALRRTMEIYS +TRFALACN S KIIE IQSRCAI+R++RL+D ++L+RL+ +
Sbjct: 163 MTDGAQQALRRTMEIYSKTTRFALACNTSDKIIEAIQSRCAILRYTRLTDAQVLTRLLEI 222
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
+E+VP V +GLEAIIFTA+GDMRQA+NNLQ+TY GF VN ENVFKVCD+PHPL +K
Sbjct: 223 CDKEQVPKVDDGLEAIIFTAEGDMRQAINNLQSTYYGFGMVNSENVFKVCDEPHPLLIKE 282
Query: 243 MVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMK------- 295
M+++ G D+A L L+++GYSP DIIT +FR+ K +AE LKLEF+K
Sbjct: 283 MLKSCSVGDIDEAYKVLSHLWNMGYSPEDIITNIFRVCKTAPIAEFLKLEFIKVQKDEHL 342
Query: 296 ---------------------------EAGFAHMRICDGVGSYLQLCGLLAKL 321
E G+ HMRI +GV S LQL GLLA+L
Sbjct: 343 MKDIFVCINSPFIVQCRALGAGRIGEEEIGYTHMRIVEGVNSLLQLSGLLARL 395
>gi|156537616|ref|XP_001607747.1| PREDICTED: replication factor C subunit 2-like [Nasonia
vitripennis]
Length = 351
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 199/310 (64%), Positives = 249/310 (80%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PW+EKYRP DIVGN D V RL I A+ GN PNLI+AGPPG GKTT+IL A LL
Sbjct: 33 NVPWIEKYRPQVFTDIVGNEDTVERLSIFAQHGNAPNLIIAGPPGVGKTTTILCFARILL 92
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
GP++++AV+ELNAS++RGIDVVRNKIKMFAQKKV L PGKHK+++LDEADSMT GAQQAL
Sbjct: 93 GPSFKDAVLELNASNERGIDVVRNKIKMFAQKKVNLAPGKHKIIILDEADSMTDGAQQAL 152
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTMEIYS++TRFALACN S KIIEPIQSRCA++R+ +LSD ++L++++ V Q+E V Y
Sbjct: 153 RRTMEIYSSTTRFALACNNSEKIIEPIQSRCAMIRYGKLSDAQVLAKVIDVCQKENVSYT 212
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+GLEAI+FTA GDMRQALNNLQ+T +GF VN +NVFKVCD+PHPL VKNM+ +G+
Sbjct: 213 DDGLEAIVFTAQGDMRQALNNLQSTVNGFNHVNGKNVFKVCDEPHPLLVKNMLEICTQGE 272
Query: 252 FDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A LK L+ +GYSP D+I+T+FR+ KN + E+LKLEF+KE G HM I +GV S
Sbjct: 273 ISKAYEILKHLWHMGYSPEDLISTIFRVAKNLTIDEYLKLEFIKEIGLTHMGIVNGVSSL 332
Query: 312 LQLCGLLAKL 321
LQL L+A+L
Sbjct: 333 LQLNSLIARL 342
>gi|145250105|ref|XP_001396566.1| replication factor C subunit 4 [Aspergillus niger CBS 513.88]
gi|134082079|emb|CAK42196.1| unnamed protein product [Aspergillus niger]
Length = 352
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 202/321 (62%), Positives = 259/321 (80%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A ++ + Y++PWVEKYRP + DIVGN + V RL IIA+DGNMP++I++G PG GKTT
Sbjct: 17 AHTAGAPPDYELPWVEKYRPVYLDDIVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTT 76
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA +LLG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+HK+V+LDEAD
Sbjct: 77 SILCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEAD 136
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT+GAQQALRRTMEIYS++TRFA ACN S+KIIEPIQSRCAI+R++RL+D +I+ RL
Sbjct: 137 SMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDAQIVKRLKQ 196
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
V EKV + EG+ A++F+A+GDMRQA+NNLQ+T+SGF FV+ +NVF+V D PHP+ V+
Sbjct: 197 VCDAEKVEHNEEGIAALVFSAEGDMRQAINNLQSTWSGFGFVSGDNVFRVVDSPHPIKVQ 256
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
M++ EGK D A L +L++LGYS DII+T+FR+ K ++EH KLEF++E GF
Sbjct: 257 AMIKACWEGKVDAALETLNELWELGYSSHDIISTMFRVTKTIPTLSEHSKLEFIREIGFT 316
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI DGV S LQL G +AKL
Sbjct: 317 HMRILDGVQSLLQLSGCVAKL 337
>gi|169776925|ref|XP_001822928.1| replication factor C subunit 4 [Aspergillus oryzae RIB40]
gi|83771665|dbj|BAE61795.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391874280|gb|EIT83190.1| replication factor C, subunit RFC2 [Aspergillus oryzae 3.042]
Length = 352
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 199/319 (62%), Positives = 258/319 (80%), Gaps = 1/319 (0%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
++ + S Y++PWVEKYRP + D+VGN + + RL IIA+DGNMP++I++G PG GKTTSI
Sbjct: 19 TAGAPSDYELPWVEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSI 78
Query: 64 LALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM 123
L LA +LLG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+HK+V+LDEADSM
Sbjct: 79 LCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKIVILDEADSM 138
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T GAQQALRRTMEIYS++TRFA ACN S+KIIEPIQSRCAI+R++RL+D +++ RL V
Sbjct: 139 TPGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDGQVVKRLKQVC 198
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
EKV + +G+ A++F+A+GDMRQA+NNLQ+T+SGF FV+ +NVF+V D PHP+ V+ M
Sbjct: 199 DAEKVEHTEDGIAALVFSAEGDMRQAINNLQSTWSGFGFVSGDNVFRVVDSPHPIKVQAM 258
Query: 244 VRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHM 302
++ EGK D A L +L+DLGYS DII+T+FR+ K ++EH KLEF++E GF HM
Sbjct: 259 IKACWEGKVDAALETLNELWDLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIREIGFTHM 318
Query: 303 RICDGVGSYLQLCGLLAKL 321
RI DGV S LQL G +AKL
Sbjct: 319 RILDGVQSLLQLSGCIAKL 337
>gi|322703485|gb|EFY95093.1| putative replication factor C [Metarhizium anisopliae ARSEF 23]
Length = 357
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 194/313 (61%), Positives = 260/313 (83%), Gaps = 1/313 (0%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
Y++PWVEKYRP + D+VGN + + RL IIAR+GNMP++I++G PG GKTTS+L LA +L
Sbjct: 31 YELPWVEKYRPVFLDDVVGNTETIERLKIIAREGNMPHVIISGMPGIGKTTSVLCLARQL 90
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LG +Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+HK+V+LDEADSMT+GAQQA
Sbjct: 91 LGESYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQA 150
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+R+++LSD +++ RLM +++ EKV Y
Sbjct: 151 LRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLSDAQVVKRLMQIIEAEKVEY 210
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+GL A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVFKV D PHP+ V+ M++ EG
Sbjct: 211 SDDGLAALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEG 270
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVG 309
D A L++L++LGYS DII+T+F++ K ++EH KLEF+KE GF HM+I +GV
Sbjct: 271 NVDSALDTLRELWNLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGFTHMKILEGVQ 330
Query: 310 SYLQLCGLLAKLS 322
+ LQL G +A+LS
Sbjct: 331 TLLQLSGCVARLS 343
>gi|380470252|emb|CCF47823.1| replication factor C subunit 4 [Colletotrichum higginsianum]
Length = 361
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 194/322 (60%), Positives = 264/322 (81%), Gaps = 1/322 (0%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+ ++S+ Y++PWVEKYRP + D+VGN + + RL IIA++GNMP++I++G PG GKT
Sbjct: 25 LTAASNGVPNYELPWVEKYRPVFLDDVVGNTETIDRLKIIAKEGNMPHVIISGMPGIGKT 84
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TS+L LA +LLG +Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLP G+HK+V+LDEA
Sbjct: 85 TSVLCLARQLLGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLVILDEA 144
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT+GAQQALRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+R++RL+DE+++ RLM
Sbjct: 145 DSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDEQVVKRLM 204
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+++ EKV Y +GL A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVFKV D PHP+ V
Sbjct: 205 QIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFKVVDSPHPIKV 264
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGF 299
+ M++ EG D A L++L+DLGYS DII+T+F++ K ++EH KLEF+KE GF
Sbjct: 265 QAMLKACYEGNVDSALDSLRELWDLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGF 324
Query: 300 AHMRICDGVGSYLQLCGLLAKL 321
HM+I +GV + LQL G +A+L
Sbjct: 325 THMKILEGVQTLLQLSGCVARL 346
>gi|46125645|ref|XP_387376.1| hypothetical protein FG07200.1 [Gibberella zeae PH-1]
Length = 354
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 194/322 (60%), Positives = 265/322 (82%), Gaps = 1/322 (0%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+A+S++ + Y++PWVEKYRP + D+VGN + V RL IIAR+GNMP++I++G PG GKT
Sbjct: 21 LAASTNGAPNYELPWVEKYRPVFLDDVVGNTETVERLKIIAREGNMPHVIISGMPGIGKT 80
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TS+L LA +LLG +Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLP G+HK+V+LDEA
Sbjct: 81 TSVLCLARQLLGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPVGRHKLVILDEA 140
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT+GAQQALRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+R+++L+D ++L RLM
Sbjct: 141 DSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVLKRLM 200
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+++ EKV + +GL A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVFKV D PHP+ V
Sbjct: 201 QIIEAEKVEFSDDGLAALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFKVVDSPHPIKV 260
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGF 299
+ M++ EGK D A L++L+DLGYS DII+T+F++ K ++EH KLEF+KE GF
Sbjct: 261 QAMLKACYEGKVDSALDTLRELWDLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGF 320
Query: 300 AHMRICDGVGSYLQLCGLLAKL 321
HM++ +GV + LQL G + +L
Sbjct: 321 THMKVLEGVQTLLQLSGCVVRL 342
>gi|353227396|emb|CCA77906.1| probable RFC4-DNA replication factor C, 37 kDa subunit
[Piriformospora indica DSM 11827]
Length = 334
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 197/323 (60%), Positives = 270/323 (83%), Gaps = 3/323 (0%)
Query: 1 MASSSSSSSA-YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
M S++ + A Y++PWVEKYRP + D+VGN + + RL +IA++GN P++I++G PG GK
Sbjct: 1 MTSAAVGTDAPYELPWVEKYRPQVLDDVVGNEETIDRLKVIAKEGNCPHIIISGLPGIGK 60
Query: 60 TTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDE 119
TTSI LAH+LLGP Y+E V+ELNASD+RGIDVVR+KIK FAQKKVTLPPG+HK+++LDE
Sbjct: 61 TTSIHCLAHQLLGPAYKEGVLELNASDERGIDVVRSKIKSFAQKKVTLPPGRHKIIILDE 120
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
ADSMTAGAQQALRRTMEI+SN+TRFALACN S+KIIEPIQSRCAI+RF++LSD +++ RL
Sbjct: 121 ADSMTAGAQQALRRTMEIFSNTTRFALACNQSNKIIEPIQSRCAILRFTKLSDAQLMKRL 180
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH 239
+ ++ + V Y +GL+A+IFT++GDMRQA+NNLQ+T+SGF FVN +NVFKVCDQPHPL
Sbjct: 181 LEILGLQ-VQYNEDGLKALIFTSEGDMRQAINNLQSTHSGFGFVNGDNVFKVCDQPHPLI 239
Query: 240 VKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAG 298
V++++R ++G D A + L +L+D GY+ DI+ T+FR++K++ E+ E+ KLE++KE G
Sbjct: 240 VQDLIRYCVKGNIDRAMTQLNKLWDDGYAAVDIVVTVFRVVKSFDELPEYTKLEYIKEVG 299
Query: 299 FAHMRICDGVGSYLQLCGLLAKL 321
F HMR+ +GVG+ +QL GL+A+L
Sbjct: 300 FVHMRVLEGVGTLVQLAGLVARL 322
>gi|363750179|ref|XP_003645307.1| hypothetical protein Ecym_2792 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888940|gb|AET38490.1| Hypothetical protein Ecym_2792 [Eremothecium cymbalariae
DBVPG#7215]
Length = 319
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 204/321 (63%), Positives = 258/321 (80%), Gaps = 4/321 (1%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
S ++ ++PWVEKYRP + DIVGN + V RL IA DGNMP++I++G PG GKTTSI
Sbjct: 2 SLAAKLELPWVEKYRPQLLKDIVGNEEIVERLQQIAYDGNMPHMIISGLPGIGKTTSIHC 61
Query: 66 LAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
+AHELLG +Y +AV+ELNASDDRGIDVVRN+IK FAQKK TLPPGKHK+++LDEADSMT+
Sbjct: 62 IAHELLGDSYSQAVLELNASDDRGIDVVRNQIKQFAQKKCTLPPGKHKIIILDEADSMTS 121
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
GAQQALRRTMEIYS+STRFA ACN S+KIIEP+QSRCAI+R+S+LSDE++L RL+ +++
Sbjct: 122 GAQQALRRTMEIYSSSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEIIKL 181
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E V Y +GLEAIIFTA+GDMRQA+NNLQ+T +GF VN +NVFK+ D PHPL VK M
Sbjct: 182 EDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGFGLVNGDNVFKIVDSPHPLVVKKM-- 239
Query: 246 NVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRI 304
+L D++ + LK L++ GYS DIITT FR++KN E+ EH++LE +KE GF HMRI
Sbjct: 240 -LLANSLDESLTYLKDLWNKGYSAVDIITTCFRVMKNLAEIKEHIRLEIIKEIGFTHMRI 298
Query: 305 CDGVGSYLQLCGLLAKLSIVR 325
+GVG+YLQL LAK+ +R
Sbjct: 299 LEGVGTYLQLSATLAKVHRLR 319
>gi|425773728|gb|EKV12062.1| DNA replication factor C subunit Rfc4, putative [Penicillium
digitatum PHI26]
gi|425782289|gb|EKV20208.1| DNA replication factor C subunit Rfc4, putative [Penicillium
digitatum Pd1]
Length = 352
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 199/321 (61%), Positives = 261/321 (81%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A+++ + Y++PWVEKYRPT + DIVGN + V RL IIA+DGNMP++I++G PG GKTT
Sbjct: 17 ANTAGAPVDYELPWVEKYRPTFLDDIVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTT 76
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
S+L LA +LLG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLP G+HK+V+LDEAD
Sbjct: 77 SVLCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLVILDEAD 136
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMTAGAQQALRRTMEIYS++TRFA ACN S+KIIEP+QSRCAI+R++RL+D +++ RLM
Sbjct: 137 SMTAGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKRLMQ 196
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ + E V + +G+ A++F+A+GDMRQA+NNLQ+T+SGF FV+ +NVF+V D PHP+ V+
Sbjct: 197 ICEAENVEHSEDGIAALVFSAEGDMRQAINNLQSTWSGFGFVSGDNVFRVVDSPHPVKVQ 256
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
M++ EGK D A GL +L+ LGYS DII+T+FR+ K ++EH KLEF++E GF
Sbjct: 257 AMIKACWEGKVDVALEGLNELWTLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIREIGFT 316
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI DGV S LQL G +AKL
Sbjct: 317 HMRILDGVQSLLQLSGCVAKL 337
>gi|429859273|gb|ELA34061.1| activator 1 37 kda subunit [Colletotrichum gloeosporioides Nara
gc5]
Length = 361
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 193/322 (59%), Positives = 265/322 (82%), Gaps = 1/322 (0%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+ ++S+ + Y++PWVEKYRP + D+VGN + + RL IIA++GNMP++I++G PG GKT
Sbjct: 25 LTAASNGAPNYELPWVEKYRPVFLDDVVGNTETIDRLKIIAKEGNMPHVIISGMPGIGKT 84
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TS+L LA +LLG +Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLP G+HK+V+LDEA
Sbjct: 85 TSVLCLARQLLGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLVILDEA 144
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT+GAQQALRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+R++RL+DE+++ RL+
Sbjct: 145 DSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDEQVVKRLL 204
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+++ EKV Y +GL A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVFKV D PHP+ V
Sbjct: 205 QIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFKVVDSPHPIKV 264
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGF 299
+ M++ EG D A L++L+DLGYS DII+T+F++ K ++EH KLEF+KE GF
Sbjct: 265 QAMLKACYEGNVDSALDSLRELWDLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGF 324
Query: 300 AHMRICDGVGSYLQLCGLLAKL 321
HM+I +GV + LQL G +A+L
Sbjct: 325 THMKILEGVQTLLQLSGCVARL 346
>gi|154322657|ref|XP_001560643.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
gi|347837173|emb|CCD51745.1| similar to replication factor C subunit [Botryotinia fuckeliana]
Length = 355
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 192/322 (59%), Positives = 263/322 (81%), Gaps = 1/322 (0%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+ ++++ + Y++PWVEKYRP + D+VGN + + RL IIA+DGNMP++I++G PG GKT
Sbjct: 21 LKANTNGVTNYELPWVEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKT 80
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TS+L LA +LLG +Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLP G+HK+V+LDEA
Sbjct: 81 TSVLCLARQLLGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRHKLVILDEA 140
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT+GAQQALRRTMEIYS++TRFA ACN S+KIIEP+QSRCAI+R++RL+D++++ RL+
Sbjct: 141 DSMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDQQVVKRLL 200
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+++ EKV Y +GL A++F+A+GDMRQA+NNLQ+T++GF VN +NVFKV D PHP+ V
Sbjct: 201 QIIETEKVEYSDDGLAALVFSAEGDMRQAINNLQSTFAGFGLVNGDNVFKVVDSPHPIKV 260
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGF 299
+ M++ EGK D A L +L+ LGYS DII+T+FR+ K ++EH KLEF+KE GF
Sbjct: 261 QAMIKACYEGKIDSALETLNELWGLGYSSHDIISTMFRVTKTVNTLSEHSKLEFIKEIGF 320
Query: 300 AHMRICDGVGSYLQLCGLLAKL 321
HM+I +GV + LQL G +A+L
Sbjct: 321 THMKILEGVQTLLQLSGCIARL 342
>gi|408397489|gb|EKJ76631.1| hypothetical protein FPSE_03181 [Fusarium pseudograminearum CS3096]
Length = 354
Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust.
Identities = 194/322 (60%), Positives = 265/322 (82%), Gaps = 1/322 (0%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+A+S++ + Y++PWVEKYRP + D+VGN + V RL IIAR+GNMP++I++G PG GKT
Sbjct: 21 LAASTNGAPNYELPWVEKYRPVFLDDVVGNTETVERLKIIAREGNMPHVIISGMPGIGKT 80
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TS+L LA +LLG +Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLP G+HK+V+LDEA
Sbjct: 81 TSVLCLARQLLGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPVGRHKLVILDEA 140
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT+GAQQALRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+R+++L+D ++L RLM
Sbjct: 141 DSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVLKRLM 200
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+++ EKV + +GL A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVFKV D PHP+ V
Sbjct: 201 QIIEAEKVEFSDDGLAALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFKVVDSPHPIKV 260
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGF 299
+ M++ EGK D A L++L+DLGYS DII+T+F++ K ++EH KLEF+KE GF
Sbjct: 261 QAMLKACYEGKVDSALDTLRELWDLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGF 320
Query: 300 AHMRICDGVGSYLQLCGLLAKL 321
HM++ +GV + LQL G + +L
Sbjct: 321 THMKVLEGVQTLLQLSGCVVRL 342
>gi|242823966|ref|XP_002488166.1| DNA replication factor C subunit Rfc4, putative [Talaromyces
stipitatus ATCC 10500]
gi|218713087|gb|EED12512.1| DNA replication factor C subunit Rfc4, putative [Talaromyces
stipitatus ATCC 10500]
Length = 815
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 198/321 (61%), Positives = 261/321 (81%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
AS++ + Y++PWVEKYRP + DIVGN + + RL IIA+DGNMP++I++G PG GKTT
Sbjct: 17 ASTAGAPPDYELPWVEKYRPVYLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTT 76
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA ++LG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+HK+V+LDEAD
Sbjct: 77 SILCLARQMLGNAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEAD 136
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT GAQQALRRTMEIYS +TRFA ACN S+KIIEP+QSRCAI+R+SRL+D +++ RL
Sbjct: 137 SMTPGAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDGQVVKRLSQ 196
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ + EKV + +G+ A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVF+V D PHP+ V+
Sbjct: 197 ICEAEKVEFSEDGIAALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPIKVQ 256
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFA 300
M++ EGK D A L +L++LGYS DII+T+FR+ K + ++EH KLEF+KE GF
Sbjct: 257 AMIKACWEGKVDSALDILNELWNLGYSSHDIISTMFRVTKTIQTLSEHAKLEFIKEIGFT 316
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI DGVG+ LQL G +AKL
Sbjct: 317 HMRILDGVGTLLQLSGCVAKL 337
>gi|212546239|ref|XP_002153273.1| DNA replication factor C subunit Rfc4, putative [Talaromyces
marneffei ATCC 18224]
gi|210064793|gb|EEA18888.1| DNA replication factor C subunit Rfc4, putative [Talaromyces
marneffei ATCC 18224]
Length = 350
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 197/320 (61%), Positives = 260/320 (81%), Gaps = 1/320 (0%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
S++ + Y++PWVEKYRP + DIVGN + + RL IIA+DGNMP++I++G PG GKTTS
Sbjct: 18 STAGAPPDYELPWVEKYRPVYLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTS 77
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
IL LA ++LG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+HK+V+LDEADS
Sbjct: 78 ILCLARQMLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADS 137
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT GAQQALRRTMEIYS +TRFA ACN S+KIIEP+QSRCAI+R+SRL+D +++ RL +
Sbjct: 138 MTPGAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDGQVVKRLSQI 197
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
+ EKV + +G+ A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVF+V D PHP+ V+
Sbjct: 198 CEAEKVDFSEDGIAALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPIKVQA 257
Query: 243 MVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAH 301
M++ EGK D A L +L++LGYS DII+T+FR+ K + ++EH KLEF+KE GF H
Sbjct: 258 MIKACWEGKVDAALDILNELWNLGYSSHDIISTMFRVTKTIQTLSEHAKLEFIKEIGFTH 317
Query: 302 MRICDGVGSYLQLCGLLAKL 321
MRI DGVG+ LQL G +AKL
Sbjct: 318 MRILDGVGTLLQLSGCVAKL 337
>gi|196010307|ref|XP_002115018.1| hypothetical protein TRIADDRAFT_28707 [Trichoplax adhaerens]
gi|190582401|gb|EDV22474.1| hypothetical protein TRIADDRAFT_28707, partial [Trichoplax
adhaerens]
Length = 315
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 195/293 (66%), Positives = 246/293 (83%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY 75
+EKYRP ++ ++VGN D ++RL + A++GN+PN+++AGPPGTGKTTSIL +A +LLG +
Sbjct: 1 IEKYRPKQLDEVVGNEDTISRLEVFAKEGNLPNIVIAGPPGTGKTTSILCIARQLLGTSM 60
Query: 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTM 135
++AV+ELNAS+DRGIDVVRNKIKMFAQKKVTLP GKHK+++LDEADSMT GAQQALRRTM
Sbjct: 61 KDAVLELNASNDRGIDVVRNKIKMFAQKKVTLPLGKHKIIILDEADSMTDGAQQALRRTM 120
Query: 136 EIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGL 195
EIYS +TRFALACN S KIIEPIQSRCA++RF+RL+D +IL+RLM V ++E V +GL
Sbjct: 121 EIYSKTTRFALACNTSEKIIEPIQSRCAVLRFTRLNDSQILARLMEVCRQESVIATNDGL 180
Query: 196 EAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDA 255
EA+IFTA GDMRQALNNLQ+TY+GF VN ENVFKVCD+PHPL +K M++ +E D+A
Sbjct: 181 EAVIFTAQGDMRQALNNLQSTYAGFGHVNSENVFKVCDEPHPLLIKQMIQASIECNIDEA 240
Query: 256 CSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGV 308
L L+ LGYSP DIIT +FR+ KNY+M E+LKLEF+KE GF HMRI +G+
Sbjct: 241 YKVLSHLWQLGYSPIDIITNIFRVCKNYDMPEYLKLEFIKEIGFTHMRIVEGI 293
>gi|326472467|gb|EGD96476.1| DNA replication factor C subunit [Trichophyton tonsurans CBS
112818]
Length = 352
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 197/321 (61%), Positives = 259/321 (80%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A S + Y++PWVEKYRP + D+VGN + + RL IIARDGNMP++I++G PG GKTT
Sbjct: 17 ADLSGAPVNYELPWVEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTT 76
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA +LLG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+HK+V+LDEAD
Sbjct: 77 SILCLARQLLGDTYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEAD 136
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT+GAQQALRRTMEI+S +TRFA ACN S+KIIEP+QSRCAI+R+SRL+D +++ RLM
Sbjct: 137 SMTSGAQQALRRTMEIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKRLMQ 196
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ + EKV Y +G+ A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVF+V D PHP+ V+
Sbjct: 197 ICEAEKVKYSDDGIAALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPVKVQ 256
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
M++ EGK D A L +L+DLGYS DII+T+FR+ K ++EH KLEF+KE GF
Sbjct: 257 AMIKACWEGKVDIALDTLNELWDLGYSAHDIISTMFRVTKTIPNLSEHSKLEFIKEIGFT 316
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI +G+ + +QL G +AKL
Sbjct: 317 HMRILEGLQTLVQLSGCIAKL 337
>gi|326481689|gb|EGE05699.1| replication factor C subunit 4 [Trichophyton equinum CBS 127.97]
Length = 352
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 197/321 (61%), Positives = 259/321 (80%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A S + Y++PWVEKYRP + D+VGN + + RL IIARDGNMP++I++G PG GKTT
Sbjct: 17 ADLSGAPVNYELPWVEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTT 76
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA +LLG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+HK+V+LDEAD
Sbjct: 77 SILCLARQLLGDTYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEAD 136
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT+GAQQALRRTMEI+S +TRFA ACN S+KIIEP+QSRCAI+R+SRL+D +++ RLM
Sbjct: 137 SMTSGAQQALRRTMEIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKRLMQ 196
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ + EKV Y +G+ A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVF+V D PHP+ V+
Sbjct: 197 ICEAEKVKYSDDGIAALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPVKVQ 256
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
M++ EGK D A L +L+DLGYS DII+T+FR+ K ++EH KLEF+KE GF
Sbjct: 257 AMIKACWEGKVDIALDTLNELWDLGYSAHDIISTMFRVTKTIPNLSEHSKLEFIKEIGFT 316
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI +G+ + +QL G +AKL
Sbjct: 317 HMRILEGLQTLVQLSGCIAKL 337
>gi|226294707|gb|EEH50127.1| replication factor C subunit 4 [Paracoccidioides brasiliensis Pb18]
Length = 352
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 197/312 (63%), Positives = 255/312 (81%), Gaps = 1/312 (0%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
Y++PWVEKYRP + DIVGN + + RL IIARDGNMP++I++G PG GKTTSIL LA ++
Sbjct: 26 YELPWVEKYRPVYLDDIVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQM 85
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LG +Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+HK+V+LDEADSMT+GAQQA
Sbjct: 86 LGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQA 145
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIYS +TRFA ACN S+KIIEP+QSRCAI+R++RL+D +IL RL + Q E V +
Sbjct: 146 LRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQILKRLTQICQAENVKH 205
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G+ A+IF+A+GDMRQA+NNLQ+T++GF FV+ +NVF+V D PHP+ V+ M++ EG
Sbjct: 206 SEDGIAALIFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPIKVQAMIKACWEG 265
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVG 309
D A L +L+DLGYS DII+T+FR+ K ++EH KLEF+KE GFAHMRI +GV
Sbjct: 266 NIDAALDTLNELWDLGYSSHDIISTMFRVTKTIPTLSEHAKLEFIKEIGFAHMRILEGVQ 325
Query: 310 SYLQLCGLLAKL 321
+ +QL G +AKL
Sbjct: 326 TLVQLSGCVAKL 337
>gi|296810064|ref|XP_002845370.1| replication factor C subunit 4 [Arthroderma otae CBS 113480]
gi|238842758|gb|EEQ32420.1| replication factor C subunit 4 [Arthroderma otae CBS 113480]
Length = 352
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 197/321 (61%), Positives = 259/321 (80%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A S + Y++PWVEKYRP + D+VGN + + RL IIARDGNMP++I++G PG GKTT
Sbjct: 17 ADVSGAPVNYELPWVEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTT 76
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA +LLG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+HK+V+LDEAD
Sbjct: 77 SILCLARQLLGDTYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEAD 136
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT+GAQQALRRTMEI+S +TRFA ACN S+KIIEP+QSRCAI+R+SRL+D +++ RLM
Sbjct: 137 SMTSGAQQALRRTMEIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKRLMQ 196
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ + EKV Y +G+ A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVF+V D PHP+ V+
Sbjct: 197 ICEAEKVKYSDDGIAALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPVKVQ 256
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
M++ EGK D A L +L+DLGYS DII+T+FR+ K ++EH KLEF+KE GF
Sbjct: 257 AMIKACWEGKVDIALDTLNELWDLGYSAHDIISTMFRVTKTIPNLSEHSKLEFIKEIGFT 316
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI +G+ + +QL G +AKL
Sbjct: 317 HMRILEGLQTIVQLSGCIAKL 337
>gi|213402449|ref|XP_002171997.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces
japonicus yFS275]
gi|212000044|gb|EEB05704.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces
japonicus yFS275]
Length = 344
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 198/316 (62%), Positives = 255/316 (80%), Gaps = 1/316 (0%)
Query: 8 SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
++ Y++PWVEKYRP + DIVGN D +ARL +IARDGNMP++I++G PG GKTTS+L LA
Sbjct: 18 ATTYELPWVEKYRPVVLDDIVGNEDTIARLKVIARDGNMPHMIISGMPGIGKTTSVLCLA 77
Query: 68 HELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGA 127
H+LLG YRE V+ELNASD+RGIDVVRNKIK FAQKKV LPPG+HK+V+LDEADSMTAGA
Sbjct: 78 HQLLGSAYREGVLELNASDERGIDVVRNKIKGFAQKKVNLPPGRHKIVILDEADSMTAGA 137
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
QQALRRTMEIYSN+TRFALACN S+KIIEPIQSRCAI+R+SRL++++I RL + + E
Sbjct: 138 QQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLNEQQIQKRLSEICKAES 197
Query: 188 VPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNV 247
V +G+ A+I TA+GDMRQA+NNLQ+T +GF VN ENVFKV DQP P+ V +M+R+
Sbjct: 198 VSITDDGMAALIMTAEGDMRQAINNLQSTVAGFDLVNSENVFKVADQPSPVAVLDMIRHC 257
Query: 248 LEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICD 306
+ G D A LK ++ LG+SP DIITT+FR++K E+ E+ +LE ++E G AHM + +
Sbjct: 258 MHGDIDKALERLKGIWGLGFSPVDIITTMFRVVKTMNEVPEYSRLEMLREIGSAHMIVLE 317
Query: 307 GVGSYLQLCGLLAKLS 322
GV +YLQL L+A+L+
Sbjct: 318 GVQTYLQLSALIARLA 333
>gi|310792410|gb|EFQ27937.1| replication factor C [Glomerella graminicola M1.001]
Length = 361
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 193/322 (59%), Positives = 264/322 (81%), Gaps = 1/322 (0%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+ ++S+ Y++PWVEKYRP + D+VGN + + RL IIA++GNMP++I++G PG GKT
Sbjct: 25 LTAASNGVPNYELPWVEKYRPVFLDDVVGNTETIDRLKIIAKEGNMPHVIISGMPGIGKT 84
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TS+L LA +LLG +Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLP G+HK+V+LDEA
Sbjct: 85 TSVLCLARQLLGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLVILDEA 144
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT+GAQQALRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+R++RL+DE+++ RL+
Sbjct: 145 DSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDEQVVKRLL 204
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+++ EKV Y +GL A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVFKV D PHP+ V
Sbjct: 205 QIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFKVVDSPHPIKV 264
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGF 299
+ M++ EG D A L++L+DLGYS DII+T+F++ K ++EH KLEF+KE GF
Sbjct: 265 QAMLKACYEGNIDSALDSLRELWDLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGF 324
Query: 300 AHMRICDGVGSYLQLCGLLAKL 321
HM+I +GV + LQL G +A+L
Sbjct: 325 THMKILEGVQTLLQLSGCVARL 346
>gi|116206666|ref|XP_001229142.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88183223|gb|EAQ90691.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 356
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 193/321 (60%), Positives = 262/321 (81%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A++ + + Y++PWVEKYRP + DIVGN + + RL IIARDGNMP+LI++G PG GKTT
Sbjct: 21 AANPTGNPTYELPWVEKYRPVFLDDIVGNTETIERLKIIARDGNMPHLIISGMPGIGKTT 80
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
S+L L+ +LLG +Y+EAV+ELNASD+RGI+VVR +IK FAQKKVTLP G+HK+V+LDEAD
Sbjct: 81 SVLCLSRQLLGDSYKEAVLELNASDERGIEVVRQRIKGFAQKKVTLPQGRHKIVILDEAD 140
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT+GAQQALRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+R+++L+D +++ RL+
Sbjct: 141 SMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVVKRLLQ 200
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+++ EKV Y EGL A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVFKV D PHP+ V+
Sbjct: 201 IIEAEKVEYNDEGLAALVFSAEGDMRQAINNLQSTFAGFGFVSADNVFKVVDSPHPIKVQ 260
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
M++ EG D A L++L+DLGYS DII+T+F++ K ++EH KLEF+KE GF
Sbjct: 261 AMLKACYEGNIDSALDTLRELWDLGYSSHDIISTMFKVTKTIPTLSEHAKLEFIKEIGFT 320
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HM+I +GV + LQL G +A+L
Sbjct: 321 HMKILEGVQTLLQLSGCVARL 341
>gi|358056280|dbj|GAA97763.1| hypothetical protein E5Q_04442 [Mixia osmundae IAM 14324]
Length = 382
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 198/313 (63%), Positives = 254/313 (81%), Gaps = 1/313 (0%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
AY++PWVEKYRP + DIVGN + + RL +IARDGN P++I++G PG GKTTSILALAH
Sbjct: 58 AYEMPWVEKYRPAVLDDIVGNEETIERLKVIARDGNCPHIIISGQPGIGKTTSILALAHA 117
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
LLG Y+E V+ELNASD+RGIDVVRN+IK FAQKKVTLP G+HK+++LDEADSMT GAQQ
Sbjct: 118 LLGKAYKEGVLELNASDERGIDVVRNRIKTFAQKKVTLPAGRHKIIILDEADSMTPGAQQ 177
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRRTMEIYSN+TRFALACN S+KIIEPIQSRCAI+R++RLSD+++L R++ + E+V
Sbjct: 178 ALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYARLSDKQLLKRIVEICDMEQVK 237
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
Y + L ++IFT+DGDMRQA+NNLQ+TYSGF FV+ E VFKVCDQPHP+ V M+ +
Sbjct: 238 YSDDALASLIFTSDGDMRQAINNLQSTYSGFGFVSSEAVFKVCDQPHPVTVNKMIEACAK 297
Query: 250 GKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHMRICDGV 308
G D + L++L+ GYS DI+TT+FR+ K+ + + E+ KLEF+KE GF+HMRI +GV
Sbjct: 298 GDIDVSMEMLEKLWHQGYSAVDIVTTIFRVTKSTDVLPEYTKLEFIKEIGFSHMRILEGV 357
Query: 309 GSYLQLCGLLAKL 321
+ QL GLLA+L
Sbjct: 358 STLTQLSGLLARL 370
>gi|406605842|emb|CCH42728.1| Replication factor C subunit 4 [Wickerhamomyces ciferrii]
Length = 324
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/322 (61%), Positives = 261/322 (81%), Gaps = 2/322 (0%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
S++ ++PWVEKYRP+K+ D+ GN + ++RL +I++DGNMP+LI++G PG GKTTSI
Sbjct: 2 SNALKLELPWVEKYRPSKLEDVTGNEETISRLKLISQDGNMPHLIISGLPGIGKTTSIHC 61
Query: 66 LAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
LAHELLG Y AV+ELNASDDRGIDVVRNKIK FAQKKV+LP G+HK+++LDEADSMT
Sbjct: 62 LAHELLGDAYSNAVLELNASDDRGIDVVRNKIKQFAQKKVSLPQGRHKIIILDEADSMTP 121
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
GAQQALRRTMEIYSN+TRFA ACNVS+KIIEP+QSRCAI+R+++LSDEE+L RL+ +++
Sbjct: 122 GAQQALRRTMEIYSNTTRFAFACNVSNKIIEPLQSRCAILRYTKLSDEEVLKRLLDIIKF 181
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
EKV Y +GLEA+IFTA+GDMRQA+NNLQ+T +GF FVN ENVFK+ D PHPL +K M+
Sbjct: 182 EKVEYSNDGLEALIFTAEGDMRQAINNLQSTVAGFGFVNGENVFKIVDSPHPLIIKKMIL 241
Query: 246 NVLEGK-FDDACSGLKQLYDLGYSPTDIITTLFRIIKN-YEMAEHLKLEFMKEAGFAHMR 303
V++ K D + L L++ GYS DI +T F+++KN YE+ E +LE MKE G HMR
Sbjct: 242 EVVQNKDIDKSLFYLNGLWEKGYSAIDIASTSFKVVKNLYEIDESDRLEIMKEIGITHMR 301
Query: 304 ICDGVGSYLQLCGLLAKLSIVR 325
+ +GVGSYLQL L+A+++ ++
Sbjct: 302 VLEGVGSYLQLNALIARIASLK 323
>gi|367037019|ref|XP_003648890.1| hypothetical protein THITE_2106865 [Thielavia terrestris NRRL 8126]
gi|346996151|gb|AEO62554.1| hypothetical protein THITE_2106865 [Thielavia terrestris NRRL 8126]
Length = 358
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 193/320 (60%), Positives = 262/320 (81%), Gaps = 1/320 (0%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
+++ S AY++PWVEKYRP + D+VGN + + RL IIARDGNMP+LI++G PG GKTTS
Sbjct: 24 ANADDSPAYELPWVEKYRPVFLDDVVGNTETIERLKIIARDGNMPHLIISGMPGIGKTTS 83
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
+L LA +LLG +Y+EAV+ELNASD+RGI+VVR +IK FAQKKVTLP G+HK+V+LDEADS
Sbjct: 84 VLCLARQLLGDSYKEAVLELNASDERGIEVVRQRIKGFAQKKVTLPAGRHKIVILDEADS 143
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT+GAQQALRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+RF++L+D +++ RL+ +
Sbjct: 144 MTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRFAKLTDAQVVKRLLQI 203
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
++ EKV Y +GL A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVFKV D PHP+ V+
Sbjct: 204 IEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTHAGFGFVSGDNVFKVVDSPHPIKVQA 263
Query: 243 MVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAH 301
M++ EG D A L++L++LGYS DII+T+F++ K ++EH KLEF+KE GF H
Sbjct: 264 MLKACYEGNIDAALDSLRELWNLGYSSHDIISTMFKVTKTIPTLSEHAKLEFIKEIGFTH 323
Query: 302 MRICDGVGSYLQLCGLLAKL 321
M+I +GV + LQL G +A+L
Sbjct: 324 MKILEGVQTLLQLSGCVARL 343
>gi|451846118|gb|EMD59429.1| hypothetical protein COCSADRAFT_41279 [Cochliobolus sativus ND90Pr]
Length = 353
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 193/319 (60%), Positives = 262/319 (82%), Gaps = 1/319 (0%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
+++ + Y++PWVEKYRP + D+VGN + + RL IIA+DGNMP++I++G PG GKTTSI
Sbjct: 20 NAAGGANYELPWVEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHMIISGMPGIGKTTSI 79
Query: 64 LALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM 123
L LA +LLG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+ K+V+LDEADSM
Sbjct: 80 LCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRQKLVILDEADSM 139
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T+GAQQALRRTMEIYS +TRFA ACN S+KIIEP+QSRCAI+R++RL+D +++ R+M +
Sbjct: 140 TSGAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRRIMQIC 199
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
+ E V Y +G+ A++F+A+GDMRQA+NNLQ+T++GF FVN +NVFKV D PHP+ V++M
Sbjct: 200 EAEDVKYSDDGIAALVFSAEGDMRQAINNLQSTFAGFGFVNGDNVFKVVDSPHPIKVQSM 259
Query: 244 VRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHM 302
++ E + DDA + LK+L+DLGYS DII+T+F++ K + ++EH KLEF+KE GF HM
Sbjct: 260 IKACHEQRVDDALAALKELWDLGYSCHDIISTMFKVTKTIDTLSEHAKLEFIKEIGFTHM 319
Query: 303 RICDGVGSYLQLCGLLAKL 321
RI +GV + LQL G +A+L
Sbjct: 320 RILEGVQTLLQLSGCVARL 338
>gi|295669055|ref|XP_002795076.1| replication factor C subunit 2 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226285769|gb|EEH41335.1| replication factor C subunit 2 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 352
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 197/312 (63%), Positives = 255/312 (81%), Gaps = 1/312 (0%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
Y++PWVEKYRP + DIVGN + + RL IIARDGNMP++I++G PG GKTTSIL LA ++
Sbjct: 26 YELPWVEKYRPVYLDDIVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQM 85
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LG +Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+HK+V+LDEADSMT+GAQQA
Sbjct: 86 LGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEADSMTSGAQQA 145
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIYS +TRFA ACN S+KIIEP+QSRCAI+R++RL+D +IL RL + + E V +
Sbjct: 146 LRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQILKRLTQICKTENVKH 205
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G+ A+IF+A+GDMRQA+NNLQ+T++GF FV+ +NVF+V D PHP+ V+ M++ EG
Sbjct: 206 SEDGIAALIFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPIKVQAMIKACWEG 265
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEM-AEHLKLEFMKEAGFAHMRICDGVG 309
D A L +L+DLGYS DII+T+FR+ K M +EH KLEF+KE GFAHMRI +GV
Sbjct: 266 DIDAALDTLNELWDLGYSSHDIISTMFRVTKTIPMLSEHAKLEFIKEIGFAHMRILEGVQ 325
Query: 310 SYLQLCGLLAKL 321
+ +QL G +AKL
Sbjct: 326 TLVQLSGCVAKL 337
>gi|403411420|emb|CCL98120.1| predicted protein [Fibroporia radiculosa]
Length = 361
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/349 (59%), Positives = 266/349 (76%), Gaps = 28/349 (8%)
Query: 1 MASSSSSSSA----------YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLI 50
MASSS+ A Y++PWVEKYRP + DIVGN + + RL +IA+DGN P++I
Sbjct: 1 MASSSAKGKAPANGNATNLPYELPWVEKYRPHALDDIVGNTETIERLKVIAKDGNCPHII 60
Query: 51 LA-----------------GPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVV 93
++ G PG GKTTSI LAH+LLG Y+E V+ELNASD+RGIDVV
Sbjct: 61 ISVGPPKHPFFARLMARPKGMPGIGKTTSIHCLAHQLLGDAYKEGVLELNASDERGIDVV 120
Query: 94 RNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSK 153
RNKIK FAQKKVTLPPG+HK+V+LDEADSMT GAQQALRRTMEIY+N+TRFALACN+S+K
Sbjct: 121 RNKIKAFAQKKVTLPPGRHKIVILDEADSMTPGAQQALRRTMEIYANTTRFALACNMSNK 180
Query: 154 IIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNL 213
IIEPIQSRCAI+R+++L D EIL RL+ + + EKV Y +GL A+IFT++GDMRQA+NNL
Sbjct: 181 IIEPIQSRCAILRYAKLRDTEILKRLLEICEMEKVQYNDDGLTALIFTSEGDMRQAINNL 240
Query: 214 QATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDII 273
Q+T SGF FV+ +NVFKVCDQPHP+ V++++R L+ DDA L +L+D GYS DII
Sbjct: 241 QSTNSGFSFVSGDNVFKVCDQPHPIIVQSIIRACLKSNIDDAMDKLNELWDQGYSAVDII 300
Query: 274 TTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKL 321
T+FR++K + EM E+ KLE++KE G+ HMRI +GVG+ +QL GL+A+L
Sbjct: 301 VTIFRVVKTFDEMPEYTKLEYIKEIGWTHMRILEGVGTLIQLGGLMARL 349
>gi|119196513|ref|XP_001248860.1| conserved hypothetical protein [Coccidioides immitis RS]
gi|392861939|gb|EAS37458.2| replication factor C subunit 4 [Coccidioides immitis RS]
Length = 352
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 196/321 (61%), Positives = 260/321 (80%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A+++ + Y++PWVEKYRP + D+VGN + + RL IIARDGNMP++I++G PG GKTT
Sbjct: 17 ANAAGAPPDYELPWVEKYRPVFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTT 76
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA ++LG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPGKHK+V+LDEAD
Sbjct: 77 SILCLARQMLGDVYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGKHKLVILDEAD 136
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT+GAQQALRRTMEIYS +TRFA ACN S+KIIEP+QSRCAI+R+SRL+D +++ RLM
Sbjct: 137 SMTSGAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKRLMQ 196
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ + E V Y +G+ A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVF+V D PHP+ V+
Sbjct: 197 ICEAEDVKYSDDGIAALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPVKVQ 256
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
M++ EGK D A L +L+DLGYS DII+T+FR+ K + EH KLEF+KE GF
Sbjct: 257 AMIKACYEGKVDSALDTLTELWDLGYSSHDIISTMFRVTKTIPSLPEHSKLEFIKEIGFT 316
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI +G+ +++QL G +AKL
Sbjct: 317 HMRILEGLQTFVQLSGCVAKL 337
>gi|367024189|ref|XP_003661379.1| hypothetical protein MYCTH_2300696 [Myceliophthora thermophila ATCC
42464]
gi|347008647|gb|AEO56134.1| hypothetical protein MYCTH_2300696 [Myceliophthora thermophila ATCC
42464]
Length = 356
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 194/322 (60%), Positives = 262/322 (81%), Gaps = 1/322 (0%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+ + ++++ Y++PWVEKYRP + DIVGN + V RL IIARDGNMP+LI++G PG GKT
Sbjct: 20 LTADNNANPTYELPWVEKYRPVFLDDIVGNTETVERLKIIARDGNMPHLIISGMPGIGKT 79
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TS+L LA +LLG Y+EAV+ELNASD+RGI+VVR +IK FAQKKVTLP G+HK+V+LDEA
Sbjct: 80 TSVLCLARQLLGDAYKEAVLELNASDERGIEVVRQRIKGFAQKKVTLPQGRHKIVILDEA 139
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT+GAQQALRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+R+++L+D +++ RL+
Sbjct: 140 DSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVVKRLL 199
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+++ EKV Y +GL A++FTA+GDMRQA+NNLQ+T++GF FV+ +NVFKV D PHP+ V
Sbjct: 200 QIIEAEKVEYSDDGLAALVFTAEGDMRQAINNLQSTHAGFGFVSGDNVFKVVDSPHPIKV 259
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGF 299
+ M++ EG D A L++L+DLGYS DII+T+F++ K ++EH KLEF+KE GF
Sbjct: 260 QAMLKACYEGNIDSALDTLRELWDLGYSSHDIISTMFKVTKTIPTLSEHAKLEFIKEIGF 319
Query: 300 AHMRICDGVGSYLQLCGLLAKL 321
HM+I +GV + LQL G +A+L
Sbjct: 320 THMKILEGVQTLLQLSGCVARL 341
>gi|327297458|ref|XP_003233423.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
gi|326464729|gb|EGD90182.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
Length = 352
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 196/321 (61%), Positives = 259/321 (80%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A S + Y++PWVEKYRP + D+VGN + + RL IIARDGNMP++I++G PG GKTT
Sbjct: 17 ADLSGAPVNYELPWVEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTT 76
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA +LLG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+HK+V+LDEAD
Sbjct: 77 SILCLARQLLGDTYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEAD 136
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT+GAQQALRRTMEI+S +TRFA ACN S+KIIEP+QSRCAI+R+SRL+D +++ RLM
Sbjct: 137 SMTSGAQQALRRTMEIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKRLMQ 196
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ + EKV Y +G+ A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVF+V D PHP+ V+
Sbjct: 197 ICEAEKVKYSDDGIAALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPVKVQ 256
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
M++ EGK D A L +L++LGYS DII+T+FR+ K ++EH KLEF+KE GF
Sbjct: 257 AMIKACWEGKVDIALDTLNELWELGYSAHDIISTMFRVTKTIPNLSEHSKLEFIKEIGFT 316
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI +G+ + +QL G +AKL
Sbjct: 317 HMRILEGLQTLVQLSGCIAKL 337
>gi|407926292|gb|EKG19259.1| ATPase AAA+ type core [Macrophomina phaseolina MS6]
Length = 352
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 196/322 (60%), Positives = 261/322 (81%), Gaps = 1/322 (0%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+ + + ++ Y++PWVEKYRP + DIVGN + + RL IIA+DGNMP++I++G PG GKT
Sbjct: 15 LKAQPNGAAGYELPWVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKT 74
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TSIL LA +LLG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+ K+V+LDEA
Sbjct: 75 TSILCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRQKIVILDEA 134
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT+GAQQALRRTMEIYS++TRFA ACN S+KIIEP+QSRCAI+R+SRL+D +++ RLM
Sbjct: 135 DSMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQLVKRLM 194
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+ E+V Y +GL A++F+A+GDMRQA+NNLQ+T++GF FVN +NVFKV D PHP+ V
Sbjct: 195 QICGAEQVEYSEDGLAALVFSAEGDMRQAINNLQSTHAGFGFVNGDNVFKVVDSPHPIKV 254
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGF 299
+ M++ E K D A L++L+DLGYS DII+T+F++ K ++EH KLEF+KE GF
Sbjct: 255 QAMIQACHEQKVDAALDTLRELWDLGYSCHDIISTMFKVTKTIPTLSEHAKLEFIKEIGF 314
Query: 300 AHMRICDGVGSYLQLCGLLAKL 321
HMRI +GV ++LQL G +A+L
Sbjct: 315 THMRILEGVQTFLQLSGCVARL 336
>gi|320040647|gb|EFW22580.1| DNA replication factor C subunit [Coccidioides posadasii str.
Silveira]
Length = 352
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 196/321 (61%), Positives = 260/321 (80%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A+++ + Y++PWVEKYRP + D+VGN + + RL IIARDGNMP++I++G PG GKTT
Sbjct: 17 ANAAGAPPDYELPWVEKYRPVFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTT 76
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA ++LG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPGKHK+V+LDEAD
Sbjct: 77 SILCLARQMLGDVYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGKHKLVILDEAD 136
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT+GAQQALRRTMEIYS +TRFA ACN S+KIIEP+QSRCAI+R+SRL+D +I+ RLM
Sbjct: 137 SMTSGAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQIVKRLMQ 196
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ + E V + +G+ A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVF+V D PHP+ V+
Sbjct: 197 ICEAEDVKHSDDGIAALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPVKVQ 256
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
M++ EGK D A L +L+DLGYS DII+T+FR+ K + EH KLEF+KE GF
Sbjct: 257 AMIKACYEGKVDSALDTLTELWDLGYSSHDIISTMFRVTKTIPSLPEHSKLEFIKEIGFT 316
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI +G+ +++QL G +AKL
Sbjct: 317 HMRILEGLQTFVQLSGCVAKL 337
>gi|396478172|ref|XP_003840471.1| similar to replication factor C subunit [Leptosphaeria maculans
JN3]
gi|312217043|emb|CBX96992.1| similar to replication factor C subunit [Leptosphaeria maculans
JN3]
Length = 350
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 192/319 (60%), Positives = 263/319 (82%), Gaps = 1/319 (0%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
+++ + Y++PWVEKYRP + D+VGN + + RL IIA+DGNMP++I++G PG GKTTSI
Sbjct: 20 NAAGGANYELPWVEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHMIISGMPGIGKTTSI 79
Query: 64 LALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM 123
L LA +LLG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+ K+V+LDEADSM
Sbjct: 80 LCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRQKLVILDEADSM 139
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T+GAQQALRRTMEIYS++TRFA ACN S+KIIEP+QSRCAI+R++RL+D +++ R+M +
Sbjct: 140 TSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRRVMQIC 199
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
+ E V Y +G+ A++F+A+GDMRQA+NNLQ+T++GF FVN +NVF+V D PHP+ V+ M
Sbjct: 200 EAEDVQYSDDGIAALVFSAEGDMRQAINNLQSTHAGFGFVNGDNVFRVVDSPHPIKVQAM 259
Query: 244 VRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHM 302
+++ E + DDA + LK+L+DLGYS DII+T+F++ K + ++EH KLEF+KE GF HM
Sbjct: 260 IKSCHEQRIDDALTALKELWDLGYSCHDIISTMFKVTKTIDTLSEHAKLEFIKEIGFTHM 319
Query: 303 RICDGVGSYLQLCGLLAKL 321
RI +GV + LQL G +A+L
Sbjct: 320 RILEGVQTLLQLSGCIARL 338
>gi|189195266|ref|XP_001933971.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187979850|gb|EDU46476.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 353
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 193/319 (60%), Positives = 261/319 (81%), Gaps = 1/319 (0%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
+++ + Y++PWVEKYRP + D+VGN + + RL IIA+DGNMP++I++G PG GKTTSI
Sbjct: 20 NAAGGANYELPWVEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHMIISGMPGIGKTTSI 79
Query: 64 LALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM 123
L LA +LLG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTL PG+ K+V+LDEADSM
Sbjct: 80 LCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLAPGRQKLVILDEADSM 139
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T+GAQQALRRTMEIYS +TRFA ACN S+KIIEP+QSRCAI+R++RL+D +++ R+M +V
Sbjct: 140 TSGAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRRIMQIV 199
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
+ E V Y +G+ A++F+A+GDMRQA+NNLQ+T++GF FVN +NVFKV D PHP+ V+ M
Sbjct: 200 EAEDVKYSDDGIAALVFSAEGDMRQAINNLQSTFAGFGFVNGDNVFKVVDSPHPIKVQAM 259
Query: 244 VRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHM 302
++ E + DDA + LK+L+DLGYS DII+T+F++ K + ++EH KLEF+KE GF HM
Sbjct: 260 IKACHEQRIDDALASLKELWDLGYSCHDIISTMFKVTKTIDTLSEHAKLEFIKEIGFTHM 319
Query: 303 RICDGVGSYLQLCGLLAKL 321
RI +GV + LQL G +A+L
Sbjct: 320 RILEGVQTLLQLSGCIARL 338
>gi|296419853|ref|XP_002839506.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635667|emb|CAZ83697.1| unnamed protein product [Tuber melanosporum]
Length = 358
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/323 (61%), Positives = 259/323 (80%), Gaps = 1/323 (0%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+A+++S + AY++PWVEKYRP + DIVGN + V RL II +DGNMP+LI++G PG GKT
Sbjct: 18 VATNTSGTPAYELPWVEKYRPIFLEDIVGNSETVERLKIIGKDGNMPHLIISGMPGIGKT 77
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TS+L LA LLG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+ KVV+LDEA
Sbjct: 78 TSVLCLARALLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRQKVVILDEA 137
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMTAGAQQALRRTMEIYS++TRFA ACN S+KIIEP+QSRCAI+R+SRL+D ++L RL+
Sbjct: 138 DSMTAGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVLHRLL 197
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+ EKV + EGL A+IF+A+GDMRQA+NNLQ+T +GF FV+ +NVFKV D PHP+ V
Sbjct: 198 EICLAEKVEHSEEGLAALIFSAEGDMRQAINNLQSTVAGFGFVSADNVFKVVDSPHPIAV 257
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGF 299
+ +++ GK D A L++L+ GYS DII+T+FR+ K + ++EH KLEF+K GF
Sbjct: 258 QALIKACYTGKIDAALEKLEELWGKGYSAIDIISTMFRVTKTVDALSEHSKLEFIKVIGF 317
Query: 300 AHMRICDGVGSYLQLCGLLAKLS 322
HMRI +GV + LQL G +AKL+
Sbjct: 318 THMRILEGVATLLQLRGCIAKLT 340
>gi|330945949|ref|XP_003306663.1| hypothetical protein PTT_19852 [Pyrenophora teres f. teres 0-1]
gi|311315764|gb|EFQ85258.1| hypothetical protein PTT_19852 [Pyrenophora teres f. teres 0-1]
Length = 353
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 193/319 (60%), Positives = 261/319 (81%), Gaps = 1/319 (0%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
+++ + Y++PWVEKYRP + D+VGN + + RL IIA+DGNMP++I++G PG GKTTSI
Sbjct: 20 NAAGGANYELPWVEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHMIISGMPGIGKTTSI 79
Query: 64 LALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM 123
L LA +LLG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTL PG+ K+V+LDEADSM
Sbjct: 80 LCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLAPGRQKLVILDEADSM 139
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T+GAQQALRRTMEIYS +TRFA ACN S+KIIEP+QSRCAI+R++RL+D +++ R+M +V
Sbjct: 140 TSGAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRRIMQIV 199
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
+ E V Y +G+ A++F+A+GDMRQA+NNLQ+T++GF FVN +NVFKV D PHP+ V+ M
Sbjct: 200 EAEDVKYSDDGIAALVFSAEGDMRQAINNLQSTFAGFGFVNGDNVFKVVDSPHPIKVQAM 259
Query: 244 VRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHM 302
++ E + DDA + LK+L+DLGYS DII+T+F++ K + ++EH KLEF+KE GF HM
Sbjct: 260 IKACHEQRVDDALTSLKELWDLGYSCHDIISTMFKVTKTIDTLSEHAKLEFIKEIGFTHM 319
Query: 303 RICDGVGSYLQLCGLLAKL 321
RI +GV + LQL G +A+L
Sbjct: 320 RILEGVQTLLQLSGCVARL 338
>gi|121703562|ref|XP_001270045.1| DNA replication factor C subunit Rfc4, putative [Aspergillus
clavatus NRRL 1]
gi|119398189|gb|EAW08619.1| DNA replication factor C subunit Rfc4, putative [Aspergillus
clavatus NRRL 1]
Length = 352
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 196/321 (61%), Positives = 258/321 (80%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A ++ + + Y++PWVEKYRP + DIVGN + V RL IIA+DGNMP++I++G PG GKTT
Sbjct: 17 AVTAGAPADYELPWVEKYRPIFLDDIVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTT 76
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
S+L LA +LLG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+HK+V+LDEAD
Sbjct: 77 SVLCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKIVILDEAD 136
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT GAQQALRRTMEIYS++TRFA ACN S+KIIEP+QSRCAI+R++RL+D +++ RL
Sbjct: 137 SMTPGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVQRLKQ 196
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ EKV + +G+ A++F+A+GDMRQA+NNLQ+T+SGF VN +NVF+V D PHP+ V+
Sbjct: 197 ICDAEKVEHTEDGIAALVFSAEGDMRQAINNLQSTWSGFGLVNGDNVFRVVDSPHPIKVQ 256
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
M++ EGK D A L +L++LGYS DII+T+FR+ K ++EH KLEF++E GF
Sbjct: 257 AMIKACWEGKIDAALETLNELWNLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIREIGFT 316
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI DGV S LQL G ++KL
Sbjct: 317 HMRILDGVQSLLQLSGCVSKL 337
>gi|256077102|ref|XP_002574847.1| replication factor C / DNA polymerase III gamma-tau subunit
[Schistosoma mansoni]
gi|353229166|emb|CCD75337.1| putative replication factor C / DNA polymerase III gamma-tau
subunit [Schistosoma mansoni]
Length = 468
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 194/312 (62%), Positives = 251/312 (80%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
A + PWVEKYRP ++ DIVGN + + RL + ARDGN+PN+I+AGPPG GKTTSIL LA
Sbjct: 150 AMESPWVEKYRPIELEDIVGNENTICRLSVFARDGNLPNIIIAGPPGCGKTTSILCLART 209
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
LL Y+EAV+ELNAS++RGI+VVR KIKMFAQKKV+LP G+ K+++LDEADSMT GAQQ
Sbjct: 210 LLKSAYKEAVLELNASNERGIEVVRTKIKMFAQKKVSLPEGRQKIIILDEADSMTEGAQQ 269
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRR ME+YS +TRFALACN SSK+IEPIQSRCA++R++RL+ ++++RL+ V + E V
Sbjct: 270 ALRRIMELYSRTTRFALACNDSSKLIEPIQSRCAVLRYARLTSAQVMARLLEVSRFEGVS 329
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
Y EGLEAI+FTADGDMRQALNNLQ+T+ GF V+ +NVFKVCD+PHP+ +K ++ + +
Sbjct: 330 YTEEGLEAIVFTADGDMRQALNNLQSTHEGFGMVSSDNVFKVCDEPHPMLIKQLIDHCSK 389
Query: 250 GKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
G+ A L+ L+ LGYS DIIT FR+IKN+ M E+LKL F+KE G H+RI +G+G
Sbjct: 390 GELSAAHKILRHLWTLGYSAEDIITITFRVIKNHPMEEYLKLGFIKEVGLTHLRISEGLG 449
Query: 310 SYLQLCGLLAKL 321
+YLQL GLLA+L
Sbjct: 450 TYLQLAGLLARL 461
>gi|402074193|gb|EJT69722.1| replication factor C subunit 4 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 360
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 192/318 (60%), Positives = 263/318 (82%), Gaps = 1/318 (0%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
S+S+ +Y++PWVEKYRP + D+VGN + + RL IIA+DGNMP++I++G PG GKTTS+L
Sbjct: 26 STSTPSYELPWVEKYRPIFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVL 85
Query: 65 ALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
LA +LLG +Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLP G+HK+V+LDEADSMT
Sbjct: 86 CLARQLLGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRHKLVILDEADSMT 145
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
+GAQQALRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+R++RL+D +++ RL+ +++
Sbjct: 146 SGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRRLLQIIE 205
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
E V + +GL A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVF+V D PHP+ V+ M+
Sbjct: 206 AEGVRHSEDGLAALVFSAEGDMRQAINNLQSTHAGFGFVSGDNVFRVVDSPHPIKVQAML 265
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMR 303
+ EG A GL++L+DLGYS DII+T+F++IK ++EH KLEF+KE GFAHM+
Sbjct: 266 KACHEGNVGSALDGLRELWDLGYSSHDIISTMFKVIKTIPTLSEHAKLEFIKEIGFAHMK 325
Query: 304 ICDGVGSYLQLCGLLAKL 321
I +GV + LQL G + +L
Sbjct: 326 ILEGVQTLLQLSGCVVRL 343
>gi|307179094|gb|EFN67566.1| Replication factor C subunit 2 [Camponotus floridanus]
Length = 349
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 193/321 (60%), Positives = 252/321 (78%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
M S + ++PW+EKYRP DIVGN D V+RL + A+ GN PN+I+AGPPG GKT
Sbjct: 24 MKIKEKDSKSQNLPWIEKYRPQVFSDIVGNEDTVSRLAVFAQHGNTPNIIIAGPPGVGKT 83
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
T+IL LA LLGP ++EAV+ELNAS++RGIDVVRNKIKMFAQKKV LP GKHK+++LDEA
Sbjct: 84 TTILCLARILLGPAFKEAVLELNASNERGIDVVRNKIKMFAQKKVNLPKGKHKIIILDEA 143
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT GAQQALRRTMEIYS++TRFALACN + +IIEPIQSRCA++R+ +L+D +IL++++
Sbjct: 144 DSMTDGAQQALRRTMEIYSHTTRFALACNNTEEIIEPIQSRCAMLRYGKLTDAQILAKVL 203
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
V ++EK+ Y +G+EAI+FTA GDMRQALNNLQ+TY+GF VN ENVFKVCD+PHPL V
Sbjct: 204 EVCEKEKLSYTDDGMEAIVFTAQGDMRQALNNLQSTYNGFNHVNGENVFKVCDEPHPLIV 263
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
K M+ + ++G AC+ + + +GYS DI++ +F++ KN+ M E LKL F+KE G
Sbjct: 264 KEMLDDCIKGDVSKACTVMDHFWKMGYSAEDIVSNIFKVCKNHAMDEKLKLIFVKEIGIT 323
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HM I +G+ S LQL L+AKL
Sbjct: 324 HMGIVEGINSLLQLHALVAKL 344
>gi|335284257|ref|XP_003354558.1| PREDICTED: replication factor C subunit 2-like [Sus scrofa]
Length = 330
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 196/298 (65%), Positives = 247/298 (82%)
Query: 24 VCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELN 83
V + G + A L + AR+GN+PN+I+AGPPGTGKTTSIL LA LLGP ++AV+ELN
Sbjct: 23 VVALPGPVSRKAGLWVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELN 82
Query: 84 ASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTR 143
AS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT GAQQALRRTMEIYS +TR
Sbjct: 83 ASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTR 142
Query: 144 FALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTAD 203
FALACN S KIIEPIQSRCA++R+++L+D +IL+RL+ V+++EKVPY +GLEAIIFTA
Sbjct: 143 FALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLNVIEKEKVPYTDDGLEAIIFTAQ 202
Query: 204 GDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLY 263
GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL VK M+++ + D+A L L+
Sbjct: 203 GDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVSANIDEAYKILAHLW 262
Query: 264 DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKL 321
LGYSP DII +FR+ K ++MAE+LKLEF+KE G+ HMR+ +GV S LQ+ GLLA+L
Sbjct: 263 HLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMRVAEGVNSLLQMAGLLARL 320
>gi|336472626|gb|EGO60786.1| hypothetical protein NEUTE1DRAFT_144139 [Neurospora tetrasperma
FGSC 2508]
gi|350294141|gb|EGZ75226.1| putative replication factor C [Neurospora tetrasperma FGSC 2509]
Length = 357
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 191/312 (61%), Positives = 257/312 (82%), Gaps = 1/312 (0%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
Y++PWVEKYRP + D+VGN + + RL IIA++GNMP+ I++G PG GKTTS+L LA +L
Sbjct: 31 YELPWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHFIISGMPGIGKTTSVLCLARQL 90
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LG Y+EAV+ELNASD+RGI+VVR +IK FAQKKVTLPPG+HK+V+LDEADSMT+GAQQA
Sbjct: 91 LGDAYKEAVLELNASDERGIEVVRQRIKGFAQKKVTLPPGRHKIVILDEADSMTSGAQQA 150
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+RF++L+D +++ RL+ +++ EKV Y
Sbjct: 151 LRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRFAKLTDAQVVKRLLQIIEAEKVEY 210
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+GL A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVFKV D PHP+ V+ M++ EG
Sbjct: 211 SDDGLAALVFSAEGDMRQAINNLQSTHAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEG 270
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVG 309
D A GL++L+DLGYS DII+T+F++ K ++EH KLEF+KE GF HM+I +GV
Sbjct: 271 NVDAALDGLRELWDLGYSSHDIISTMFKVTKTIPTLSEHAKLEFIKEIGFTHMKILEGVQ 330
Query: 310 SYLQLCGLLAKL 321
+ LQL G +A+L
Sbjct: 331 TLLQLSGCVARL 342
>gi|28950096|emb|CAD70859.1| probable REPLICATION FACTOR C (40 KDA SUBUNIT) [Neurospora crassa]
Length = 357
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 191/312 (61%), Positives = 257/312 (82%), Gaps = 1/312 (0%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
Y++PWVEKYRP + D+VGN + + RL IIA++GNMP+ I++G PG GKTTS+L LA +L
Sbjct: 31 YELPWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHFIISGMPGIGKTTSVLCLARQL 90
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LG Y+EAV+ELNASD+RGI+VVR +IK FAQKKVTLPPG+HK+V+LDEADSMT+GAQQA
Sbjct: 91 LGDAYKEAVLELNASDERGIEVVRQRIKGFAQKKVTLPPGRHKIVILDEADSMTSGAQQA 150
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+RF++L+D +++ RL+ +++ EKV Y
Sbjct: 151 LRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRFAKLTDAQVVKRLLQIIEAEKVEY 210
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+GL A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVFKV D PHP+ V+ M++ EG
Sbjct: 211 SDDGLAALVFSAEGDMRQAINNLQSTHAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEG 270
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVG 309
D A GL++L+DLGYS DII+T+F++ K ++EH KLEF+KE GF HM+I +GV
Sbjct: 271 NVDAALDGLRELWDLGYSSHDIISTMFKVTKTIPTLSEHAKLEFIKEIGFTHMKILEGVQ 330
Query: 310 SYLQLCGLLAKL 321
+ LQL G +A+L
Sbjct: 331 TLLQLSGCVARL 342
>gi|449300715|gb|EMC96727.1| hypothetical protein BAUCODRAFT_34119 [Baudoinia compniacensis UAMH
10762]
Length = 350
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 195/321 (60%), Positives = 260/321 (80%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A ++ + + +++PWVEKYRP + DIVGN + + RL IIA+DGNMP+LI++G PG GKTT
Sbjct: 16 AHTNGAPTNFELPWVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHLIISGMPGIGKTT 75
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA +LLG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLP G+HK+V+LDEAD
Sbjct: 76 SILCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRHKIVILDEAD 135
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT+GAQQALRRTMEIYS +TRFA ACN S+KIIEP+QSRCAI+R+SRL+D +++ RL
Sbjct: 136 SMTSGAQQALRRTMEIYSGTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKRLYQ 195
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ + E V Y +G+ A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVF+V D PHP+ V+
Sbjct: 196 ICKAENVEYSDDGIAALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFRVVDSPHPVKVQ 255
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
M+++ E K D+A L++L+ LGYS DIITT+FR+ K ++EH KLEF++E GF
Sbjct: 256 AMLKSCQEQKVDEALDSLQELWGLGYSSHDIITTMFRVTKTLPSLSEHSKLEFIREIGFT 315
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI +GV +YLQL G +AKL
Sbjct: 316 HMRILEGVQTYLQLAGCVAKL 336
>gi|388582885|gb|EIM23188.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 331
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 196/318 (61%), Positives = 256/318 (80%), Gaps = 2/318 (0%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
S S+ Y++PWVEKYRP + DIVGN D V RL +IA+DGNMP++I++G PG GKTT++LA
Sbjct: 2 SKSANYEVPWVEKYRPRVLSDIVGNQDTVKRLEVIAQDGNMPHMIMSGTPGIGKTTAVLA 61
Query: 66 LAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
LAH LLGP+ ++EAV+ELNASD+RGIDVVRN+IK FAQKK+ LPPG+HK+V+LDEADSMT
Sbjct: 62 LAHTLLGPDVFKEAVLELNASDERGIDVVRNRIKSFAQKKIALPPGRHKIVILDEADSMT 121
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
+GAQQALRRTMEIYSN+TRFA ACN S+KIIEPIQSRCAI+RFS+L D E+L RL + +
Sbjct: 122 SGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPIQSRCAILRFSKLRDIELLQRLRQIAE 181
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
+E EG EA+IFT++GDMRQA+NNLQ+T++G V + VFKVCDQPHPL V+N++
Sbjct: 182 KENADVTDEGYEALIFTSEGDMRQAVNNLQSTHTGLGLVTPDAVFKVCDQPHPLLVQNLL 241
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHMR 303
+ + +DA S L +L+ GY+ DII TLFR+ +N + + E LKLE++KE G+ HMR
Sbjct: 242 ESCHKADIEDALSKLDELWTHGYAAIDIIQTLFRVARNTQSLEESLKLEYIKEIGWTHMR 301
Query: 304 ICDGVGSYLQLCGLLAKL 321
I +GV + +QL GL+A+L
Sbjct: 302 ILEGVATIVQLSGLVARL 319
>gi|320593090|gb|EFX05499.1| aaa ATPase domain containing protein [Grosmannia clavigera kw1407]
Length = 357
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 194/322 (60%), Positives = 262/322 (81%), Gaps = 1/322 (0%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+A++S+ + Y++PWVEKYRP + DIVGN + + RL IIA+DGNMP++I++G PG GKT
Sbjct: 22 LAATSNGTPNYELPWVEKYRPAFLDDIVGNTETIERLKIIAKDGNMPHIIISGMPGIGKT 81
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TS+L LA +LLG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLP G+HK+V+LDEA
Sbjct: 82 TSVLCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRHKIVILDEA 141
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT+GAQQALRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+R++RL+D +++ RL+
Sbjct: 142 DSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKRLL 201
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+++ E+V Y +GL A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVFKV D PHP+ V
Sbjct: 202 QIIEAEQVRYSDDGLAALVFSAEGDMRQAINNLQSTHAGFGFVSGDNVFKVVDAPHPIKV 261
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGF 299
+ M++ EG D A L +L+ LGYS DII+T+FR+ K ++EH KLEF++E GF
Sbjct: 262 QAMLKACHEGNVDAALDILHELWRLGYSSHDIISTMFRVTKTMPGLSEHAKLEFIREIGF 321
Query: 300 AHMRICDGVGSYLQLCGLLAKL 321
HM+I +GV + LQL G LA+L
Sbjct: 322 THMKILEGVQTLLQLSGCLARL 343
>gi|440632243|gb|ELR02162.1| replication factor C subunit 2/4 [Geomyces destructans 20631-21]
Length = 357
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 191/323 (59%), Positives = 263/323 (81%), Gaps = 1/323 (0%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+ ++ + + Y++PWVEKYRP + D+VGN++ + RL IIAR+GNMP++I++G PG GKT
Sbjct: 21 LKANGAGVTNYELPWVEKYRPVFLDDVVGNVETIERLKIIAREGNMPHMIISGMPGIGKT 80
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TS+L LA +LLG +Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLP G+ K+V+LDEA
Sbjct: 81 TSVLCLARQLLGESYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRQKLVILDEA 140
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT+GAQQALRRTMEIYS++TRFA ACN S+KIIEP+QSRCAI+R++RL+D +++ RL+
Sbjct: 141 DSMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKRLL 200
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+++ E V Y +GL A++F+A+GDMRQA+NN Q+T++GF FV+ +NVFKV D PHP+ V
Sbjct: 201 QIIEAENVEYSDDGLAALVFSAEGDMRQAINNCQSTWAGFGFVSGDNVFKVVDSPHPIKV 260
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGF 299
+ M+++ EGK D A LK+L+DLGYS DII+T+FR+ K ++EH KLEF+KE GF
Sbjct: 261 QAMLKSCYEGKVDAALESLKELWDLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIKEIGF 320
Query: 300 AHMRICDGVGSYLQLCGLLAKLS 322
HM+I +GV + LQL +A+LS
Sbjct: 321 THMKILEGVQTLLQLSACVARLS 343
>gi|346319917|gb|EGX89518.1| activator 1 37 kDa subunit [Cordyceps militaris CM01]
Length = 361
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 190/321 (59%), Positives = 264/321 (82%), Gaps = 3/321 (0%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+++S++ + Y++PW +YRP + D+VGN + + RL IIA++GNMP++I++G PG GKT
Sbjct: 21 LSASTNGAPNYELPW--QYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKT 78
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TS+L LA ELLG +Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+HK+++LDEA
Sbjct: 79 TSVLCLARELLGESYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLIILDEA 138
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT+GAQQALRRTMEIYSN+TRFA ACN+S+KIIEP+QSRCAI+R+++L+D +++ RL+
Sbjct: 139 DSMTSGAQQALRRTMEIYSNTTRFAFACNMSNKIIEPLQSRCAILRYAKLTDAQVVKRLL 198
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+++ EKV Y +GL A++F+A+GDMRQA+NNLQ+TYSGF FV+ +NVFKV D PHP+ V
Sbjct: 199 QIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTYSGFGFVSGDNVFKVVDSPHPIKV 258
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGF 299
+ M++ EG D A L++L+DLGYS DII+T+F++ K ++EH KLEF+KE GF
Sbjct: 259 QAMIKACYEGNVDSALDALRELWDLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGF 318
Query: 300 AHMRICDGVGSYLQLCGLLAK 320
HM+I +GV + LQL G +A+
Sbjct: 319 THMKILEGVQTLLQLSGCVAE 339
>gi|453087153|gb|EMF15194.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 349
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 192/321 (59%), Positives = 260/321 (80%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A+++ + S Y++PWVEKYRP + DIVGN + + RL IIA+DGNMP++I++G PG GKTT
Sbjct: 14 ANANGTPSNYELPWVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTT 73
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
S+L LA +LLG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+ K+V+LDEAD
Sbjct: 74 SVLCLARQLLGEAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRQKIVILDEAD 133
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT+GAQQALRRTMEIYS +TRFA ACN S+KIIEP+QSRCAI+R++RL+D +++ R+
Sbjct: 134 SMTSGAQQALRRTMEIYSGTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKRINQ 193
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ + E V + +GL A++F+A+GDMRQA+NNLQ+T++GF FVN +NVF+V D PHP+ V+
Sbjct: 194 ICKAENVQFSDDGLAALVFSAEGDMRQAINNLQSTHAGFGFVNSDNVFRVVDSPHPIKVQ 253
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
M+++ E D+A LK+L+ LGYS DII+++F++ K +AEH KLEF++E GF
Sbjct: 254 AMIKSCHERNVDEALDALKELWGLGYSSHDIISSMFKVTKTIPSLAEHTKLEFIREIGFT 313
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI +GV +YLQL G +AKL
Sbjct: 314 HMRILEGVQTYLQLAGCIAKL 334
>gi|322795578|gb|EFZ18260.1| hypothetical protein SINV_11151 [Solenopsis invicta]
Length = 354
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 189/315 (60%), Positives = 251/315 (79%)
Query: 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH 68
S ++PW+EKYRP DIVGN D V+RL + A+ GN PN+I+AGPPG GKTT+IL LA
Sbjct: 35 STANLPWIEKYRPQVFSDIVGNEDTVSRLAVFAQHGNTPNIIIAGPPGVGKTTTILCLAR 94
Query: 69 ELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQ 128
LLGP ++EAV+ELNAS++RGIDVVRNKIKMFAQKKV LP GKHK+++LDEADSMT GAQ
Sbjct: 95 TLLGPAFKEAVLELNASNERGIDVVRNKIKMFAQKKVNLPKGKHKIIILDEADSMTDGAQ 154
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKV 188
QALRRTMEIYS++TRFALACN + +IIEPIQSRCA++R+ +L+D ++L++++ V ++E +
Sbjct: 155 QALRRTMEIYSHTTRFALACNNTEEIIEPIQSRCAMLRYGKLTDAQVLAKVLEVCEKENI 214
Query: 189 PYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVL 248
Y +G+EAI+FTA GDMRQALNNLQ+T +GF VN ENVFKVCD+PHPL VK+M+ N +
Sbjct: 215 SYTDDGMEAIVFTAQGDMRQALNNLQSTRNGFNHVNAENVFKVCDEPHPLIVKDMLDNCV 274
Query: 249 EGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGV 308
+G AC+ + + +GYS DII+ +F++ KN+ M E LK++F+KE G HM I +G+
Sbjct: 275 QGDVSKACTVMDHFWKMGYSAEDIISNVFKVCKNHAMDEKLKIKFIKEIGITHMGIVEGI 334
Query: 309 GSYLQLCGLLAKLSI 323
S LQL L+A+L +
Sbjct: 335 NSLLQLHALVARLCL 349
>gi|406861841|gb|EKD14894.1| replication factor C [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 363
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 194/330 (58%), Positives = 264/330 (80%), Gaps = 8/330 (2%)
Query: 1 MASSSSSSSAYDIPW-------VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAG 53
+ ++++ + Y++PW VEKYRP + D+VGN + + RL IIA+DGNMP++I++G
Sbjct: 21 LKANTNGVANYELPWQVTRCLSVEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISG 80
Query: 54 PPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHK 113
PG GKTTS+L LA +LLG +Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLP G+ K
Sbjct: 81 MPGIGKTTSVLCLARQLLGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRQK 140
Query: 114 VVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDE 173
+V+LDEADSMT+GAQQALRRTMEIYS +TRFA ACN S+KIIEP+QSRCAI+R+SRL+D
Sbjct: 141 LVILDEADSMTSGAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAILRYSRLTDA 200
Query: 174 EILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCD 233
+++ RL+ +++ EKV Y +GL A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVFKV D
Sbjct: 201 QVVKRLLQIIEAEKVEYAEDGLAALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFKVVD 260
Query: 234 QPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLE 292
PHP+ V+ M++ EGK D A LK+L+DLGYS DII+T+FR+ K ++EH KLE
Sbjct: 261 SPHPIKVQAMLKACYEGKVDAALETLKELWDLGYSSHDIISTMFRVTKTIPTLSEHSKLE 320
Query: 293 FMKEAGFAHMRICDGVGSYLQLCGLLAKLS 322
F+KE GF HM+I +GV + LQL G +A+L+
Sbjct: 321 FIKEIGFTHMKILEGVQTLLQLSGCVARLA 350
>gi|332016496|gb|EGI57389.1| Replication factor C subunit 2 [Acromyrmex echinatior]
Length = 355
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 192/310 (61%), Positives = 250/310 (80%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PW+EKYRP DIVGN D V+RL + A+ GN PN+I+AGPPG GKTT+IL LA LL
Sbjct: 39 NLPWIEKYRPQVFSDIVGNEDTVSRLSVFAQHGNTPNIIIAGPPGVGKTTTILCLARILL 98
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
GP ++EAV+ELNAS++RGIDVVRNKIKMFAQKKV LP GKHK+++LDEADSMT GAQQAL
Sbjct: 99 GPAFKEAVLELNASNERGIDVVRNKIKMFAQKKVNLPKGKHKIIILDEADSMTDGAQQAL 158
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTMEIYS++TRFALACN + +IIEPIQSRCA++R+ +L+D E+L++++ V ++E V Y
Sbjct: 159 RRTMEIYSHTTRFALACNNTEEIIEPIQSRCAMLRYGKLTDAEVLAKVLEVCEKENVSYT 218
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+G+EAIIFTA GDMRQALNNLQ+TY+GF VN ENVFKVCD+PHPL VK+M+ + ++G
Sbjct: 219 DDGMEAIIFTAQGDMRQALNNLQSTYNGFNHVNAENVFKVCDEPHPLIVKDMLDDCIKGD 278
Query: 252 FDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
ACS + + +GYS DII+ +F++ KN+ + E LKL+F+KE G HM I +G+ S
Sbjct: 279 VSKACSVMDHFWKMGYSAEDIISNVFKVCKNHTIDERLKLKFVKEIGITHMGIVEGINSL 338
Query: 312 LQLCGLLAKL 321
LQL L+A+L
Sbjct: 339 LQLHALVARL 348
>gi|403163867|ref|XP_003323926.2| replication factor C subunit 4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375164648|gb|EFP79507.2| replication factor C subunit 4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 342
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 195/315 (61%), Positives = 250/315 (79%), Gaps = 1/315 (0%)
Query: 8 SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
+S ++PWVEKYRP + DI GN D + RL +IARDGN P++I++G PG GKTTSIL LA
Sbjct: 16 ASGAEVPWVEKYRPIILDDITGNTDTIERLKVIARDGNCPHIIISGAPGIGKTTSILCLA 75
Query: 68 HELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGA 127
H LLG Y+E V+ELNASD+RGIDVVRNKIK FA KVTLP G+HK+++LDEADSMTAGA
Sbjct: 76 HALLGDAYKEGVLELNASDERGIDVVRNKIKTFANTKVTLPAGRHKIIILDEADSMTAGA 135
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
QQALRRTMEIYSN+TRFALACN SSKIIEPIQSRCAI+R+ +L D+E+L RL+ + E
Sbjct: 136 QQALRRTMEIYSNTTRFALACNNSSKIIEPIQSRCAILRYGKLKDQEVLKRLVEIATAEN 195
Query: 188 VPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNV 247
V Y +GL A+IFT++GDMRQA+NNLQ+T SGF FV+ E+VFKVCDQPHP+ ++ ++
Sbjct: 196 VKYAEDGLAALIFTSEGDMRQAINNLQSTVSGFGFVSAESVFKVCDQPHPVVIQKLLSAC 255
Query: 248 LEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHMRICD 306
+G DA L+ L++ GYS DI+ TL +++K+ + M+E LKLEF+KE GF HMRI +
Sbjct: 256 EKGDLSDALDQLEHLWEQGYSALDIVGTLLKVVKSMDRMSEFLKLEFIKEIGFTHMRILE 315
Query: 307 GVGSYLQLCGLLAKL 321
GV + +QL GLL++L
Sbjct: 316 GVSTLVQLGGLLSRL 330
>gi|171692201|ref|XP_001911025.1| hypothetical protein [Podospora anserina S mat+]
gi|170946049|emb|CAP72850.1| unnamed protein product [Podospora anserina S mat+]
Length = 357
Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust.
Identities = 191/320 (59%), Positives = 259/320 (80%), Gaps = 1/320 (0%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
++ S + Y++PWVEKYRP + D+VGN + + RL IIARDGNMP++I++G PG GKTTS
Sbjct: 25 ANPSGNPTYELPWVEKYRPVFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTS 84
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
+L LA +LLG Y+EAV+ELNASD+RGIDVVR +IK FAQKKVTLP G+HK+V+LDEADS
Sbjct: 85 VLCLARQLLGDAYKEAVLELNASDERGIDVVRQRIKGFAQKKVTLPQGRHKLVILDEADS 144
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT+GAQQALRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+R+++L+DE+++ RL+ +
Sbjct: 145 MTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDEQVVKRLLQI 204
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
+ E V + +GL A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVFKV D PHP+ V+
Sbjct: 205 IDAEGVKFSEDGLAALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFKVVDSPHPIKVQA 264
Query: 243 MVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAH 301
M++ EG D A L++L+DLGYS DII+T+FR+ K E ++EH KLEF+KE GF H
Sbjct: 265 MLKACYEGNVDSALDTLRELWDLGYSSHDIISTMFRVTKTIETLSEHSKLEFIKEIGFTH 324
Query: 302 MRICDGVGSYLQLCGLLAKL 321
M++ +GV + LQL G + +L
Sbjct: 325 MKVLEGVQTLLQLSGCVVRL 344
>gi|50304813|ref|XP_452362.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641495|emb|CAH01213.1| KLLA0C03718p [Kluyveromyces lactis]
Length = 320
Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust.
Identities = 199/317 (62%), Positives = 254/317 (80%), Gaps = 4/317 (1%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
S ++ ++PWVEKYRP + DIVGN D V RL IA DGNMP++I++G PG GKTTSI
Sbjct: 2 SYATKLELPWVEKYRPHLLKDIVGNEDTVQRLQTIAADGNMPHMIISGLPGIGKTTSIHC 61
Query: 66 LAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
LAHELLG Y +AV+ELNASDDRGI+VVRN+IK FAQKK TLP GKHK+++LDEADSMT+
Sbjct: 62 LAHELLGDAYSQAVLELNASDDRGIEVVRNQIKHFAQKKCTLPAGKHKIIILDEADSMTS 121
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
GAQQALRRTME+YSN+TRFA ACN S+KIIEP+QSRCAI+R+S+L+DE++L RL+ +++
Sbjct: 122 GAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLTDEQVLKRLLEIIKL 181
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E V Y +GLEAIIFTA+GDMRQA+NNLQ+T +GF VN ENVF++ D PHPL VK M
Sbjct: 182 EDVQYTNDGLEAIIFTAEGDMRQAINNLQSTVAGFGLVNGENVFQIVDSPHPLIVKRM-- 239
Query: 246 NVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRI 304
+L G D++ LK+L+ GYS DI+ T FR++KN E+ E ++LE +KE GF HMRI
Sbjct: 240 -LLSGSLDESLQYLKELWVKGYSAVDIVITCFRVMKNLDEVKETVRLEMIKEIGFTHMRI 298
Query: 305 CDGVGSYLQLCGLLAKL 321
+GVG++LQL G+LAK+
Sbjct: 299 LEGVGTHLQLSGMLAKI 315
>gi|225718574|gb|ACO15133.1| Replication factor C subunit 2 [Caligus clemensi]
Length = 325
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 200/319 (62%), Positives = 250/319 (78%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
SS + PW+EKYRP DIVGN + V+RL + + DGN PN+I+AGPPG GKTT+IL
Sbjct: 3 SSQTIDRAPWIEKYRPKTFDDIVGNSETVSRLKVFSEDGNPPNIIIAGPPGVGKTTTILC 62
Query: 66 LAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
LA LLG ++++AV+ELNAS++RGIDVVRNKIKMFAQ+KVTLP +HK++VLDEADSMT
Sbjct: 63 LARALLGGSFKDAVLELNASNERGIDVVRNKIKMFAQQKVTLPQSRHKIIVLDEADSMTE 122
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQQALRRTMEIYS++TRF LACN S K+IEPIQSRCA++R+SR SD E+L++++ V +
Sbjct: 123 AAQQALRRTMEIYSDTTRFCLACNSSEKVIEPIQSRCAMLRYSRPSDAEVLAQVIKVCDK 182
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E V Y EGLEAI+FTA GDMRQALNNLQ+T+ GF V ENVF+VCD+PHPL VK+M+
Sbjct: 183 EGVSYTSEGLEAIVFTAQGDMRQALNNLQSTHDGFGKVISENVFRVCDEPHPLLVKDMLS 242
Query: 246 NVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
+ EGK ++A L L+ +GYSP DIIT +FR+ K + MAE+LKLEF+KE G HMR+
Sbjct: 243 HCAEGKMEEAYKVLSHLWKMGYSPEDIITNVFRVCKTHPMAEYLKLEFIKEIGQTHMRVV 302
Query: 306 DGVGSYLQLCGLLAKLSIV 324
G S LQL GLLAKL V
Sbjct: 303 HGSNSLLQLSGLLAKLCHV 321
>gi|334349834|ref|XP_003342265.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit
2-like, partial [Monodelphis domestica]
Length = 414
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 190/294 (64%), Positives = 246/294 (83%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A + + Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I++GPPGTGKTT
Sbjct: 65 APGKAPGTHYELPWVEKYRPMKLNEIVGNEDTVSRLEVFAREGNVPNIIISGPPGTGKTT 124
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA LLGP+ ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEAD
Sbjct: 125 SILCLARALLGPSLKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPRGRHKIIILDEAD 184
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D ++L+RLM
Sbjct: 185 SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMT 244
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
++++EKV Y +GLEAI+FTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL VK
Sbjct: 245 IIEKEKVEYTDDGLEAIVFTAXGDMRQALNNLQSTHSGFGFINSENVFKVCDEPHPLLVK 304
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMK 295
M+++ + D+A L L+ LGYSP D+I +FR+ K ++M E+LKLEF+K
Sbjct: 305 EMLQHCVSANIDEAYKILAHLWRLGYSPEDVIGNIFRVCKTFQMPEYLKLEFIK 358
>gi|340904964|gb|EGS17332.1| DNA replication factor C-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 803
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 196/307 (63%), Positives = 252/307 (82%), Gaps = 1/307 (0%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY 75
VEKYRP + DIVGN + + RL IIARDGNMP+LI++G PG GKTTS+L LA +LLG Y
Sbjct: 482 VEKYRPVFLDDIVGNTETIERLKIIARDGNMPHLIISGMPGIGKTTSVLCLARQLLGDAY 541
Query: 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTM 135
+EAV+ELNASD+RGIDVVR +IK FAQKKVTLPPG+HK+V+LDEADSMT+GAQQALRRTM
Sbjct: 542 KEAVLELNASDERGIDVVRQRIKGFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTM 601
Query: 136 EIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGL 195
EIYSN+TRFA ACN S+KIIEP+QSRCAI+R+S+L+D +I+ RLM +++ EKV Y +GL
Sbjct: 602 EIYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLTDAQIVKRLMQIIEAEKVEYSDDGL 661
Query: 196 EAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDA 255
A++FTA+GDMRQA+NNLQ+T +GF FV+ +NVFKV D PHP+ V+ M++ EGK D A
Sbjct: 662 AALVFTAEGDMRQAINNLQSTVAGFGFVSGDNVFKVVDSPHPIKVQAMIKACYEGKIDQA 721
Query: 256 CSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVGSYLQL 314
L++L+DLGYS DII+T+F++ K ++EH KLEF+KE GF HM+I +GV + LQL
Sbjct: 722 LDTLRELWDLGYSSHDIISTMFKVTKTIPTLSEHAKLEFIKEIGFTHMKILEGVQTLLQL 781
Query: 315 CGLLAKL 321
G +A+L
Sbjct: 782 SGCVARL 788
>gi|336266754|ref|XP_003348144.1| hypothetical protein SMAC_03989 [Sordaria macrospora k-hell]
gi|380091080|emb|CCC11286.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 357
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 189/312 (60%), Positives = 258/312 (82%), Gaps = 1/312 (0%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
Y++PWVEKYRP + D+VGN + + RL IIA++GNMP++I++G PG GKTTS+L LA +L
Sbjct: 31 YELPWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQL 90
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LG Y+EAV+ELNASD+RGI+VVR +IK FAQKKVTLPPG+HK+V+LDEADSMT+GAQQA
Sbjct: 91 LGDAYKEAVLELNASDERGIEVVRQRIKGFAQKKVTLPPGRHKIVILDEADSMTSGAQQA 150
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+R+++L+D +++ RL+ +++ EKV Y
Sbjct: 151 LRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVVKRLLQIIEAEKVEY 210
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+GL A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVFKV D PHP+ V+ M++ EG
Sbjct: 211 SDDGLAALVFSAEGDMRQAINNLQSTHAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEG 270
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVG 309
D A GL++L++LGYS DII+T+F++ K ++EH KLEF+KE GF HM+I +GV
Sbjct: 271 NVDAALDGLRELWNLGYSSHDIISTMFKVTKTIPTLSEHAKLEFIKEIGFTHMKILEGVQ 330
Query: 310 SYLQLCGLLAKL 321
+ LQL G +A+L
Sbjct: 331 TLLQLSGCVARL 342
>gi|167518313|ref|XP_001743497.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778596|gb|EDQ92211.1| predicted protein [Monosiga brevicollis MX1]
Length = 384
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 197/306 (64%), Positives = 250/306 (81%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY 75
VEKYRP + DIVGN V+RL +IA+DGNMPN+I+AGPPG GKTTSIL LA LLG +Y
Sbjct: 68 VEKYRPQVLDDIVGNEATVSRLKVIAKDGNMPNIIIAGPPGIGKTTSILCLARTLLGKSY 127
Query: 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTM 135
+EAVME NASDDRGIDVVRNKIKMFA+KKV+LPPG+HK+V+LDE DSMT AQQALRRT+
Sbjct: 128 KEAVMETNASDDRGIDVVRNKIKMFAKKKVSLPPGRHKIVILDEVDSMTPTAQQALRRTI 187
Query: 136 EIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGL 195
E+YSN+TRFALACN S KII+PIQSRC I+R++RL+D ++L RL+ V Q EK+ + GL
Sbjct: 188 ELYSNTTRFALACNTSEKIIDPIQSRCTILRYTRLTDAQVLKRLIDVCQAEKIVQLDSGL 247
Query: 196 EAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDA 255
EA+IFTA+GDMRQA+NNLQ+T+ F ++ + VFKVCDQPHPL VKN+V+ LEG D A
Sbjct: 248 EALIFTAEGDMRQAINNLQSTHQSFGEISADKVFKVCDQPHPLLVKNVVKACLEGSIDVA 307
Query: 256 CSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLC 315
GL +L+ LGY+ DII +FR+ K+YEM E +KLE++KE G +H+RI +G+ S++QL
Sbjct: 308 YDGLAELWRLGYAAIDIINVIFRVTKSYEMPEGIKLEYIKEIGRSHLRILEGLDSFMQLS 367
Query: 316 GLLAKL 321
GL+A+L
Sbjct: 368 GLVARL 373
>gi|115398522|ref|XP_001214850.1| activator 1 37 kDa subunit [Aspergillus terreus NIH2624]
gi|114191733|gb|EAU33433.1| activator 1 37 kDa subunit [Aspergillus terreus NIH2624]
Length = 352
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 195/321 (60%), Positives = 257/321 (80%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A ++ + Y++PWVEKYRP + D+VGN + + RL IIA+DGNMP++I++G PG GKTT
Sbjct: 17 AVTAGAPPDYELPWVEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTT 76
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA +LLG Y++AV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+HK+++LDEAD
Sbjct: 77 SILCLARQLLGDAYKDAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKIIILDEAD 136
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT GAQQALRRTMEIYS++TRFA ACN S+KIIEP+QSRCAI+R++RL+D +++ RL
Sbjct: 137 SMTPGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDGQVVKRLKQ 196
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
V EKV + +GL A++F+A+GDMRQA+NNLQ+T+SGF FV+ +NVF+V D PHP+ V+
Sbjct: 197 VCDAEKVEHTEDGLAALVFSAEGDMRQAINNLQSTWSGFGFVSGDNVFRVVDSPHPVKVQ 256
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
M++ EGK D A L +L+ LGYS DII+T+FR+ K ++EH KLEF++E GF
Sbjct: 257 AMIKACWEGKVDAALETLNELWTLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIREIGFT 316
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI DGV S LQL G ++KL
Sbjct: 317 HMRILDGVQSLLQLSGCVSKL 337
>gi|302421348|ref|XP_003008504.1| replication factor C subunit 4 [Verticillium albo-atrum VaMs.102]
gi|261351650|gb|EEY14078.1| replication factor C subunit 4 [Verticillium albo-atrum VaMs.102]
Length = 361
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 188/322 (58%), Positives = 262/322 (81%), Gaps = 1/322 (0%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
++++++ + Y++PWVEKYRP + D+VGN + + RL IIA++GNMP++I++G PG GKT
Sbjct: 25 VSTTANGAPTYELPWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKT 84
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TS+L LA +LLG +Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLP G+HK+V+LDEA
Sbjct: 85 TSVLCLARQLLGESYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLVILDEA 144
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT+GAQQALRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+R+ RL+D +++ RLM
Sbjct: 145 DSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYGRLTDAQVVKRLM 204
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+++ E V Y +GL A++F+A+GDMRQA+NNLQ+T+SGF FV+ +NVFK+ D PHP+ V
Sbjct: 205 QIIEAESVQYSDDGLAALVFSAEGDMRQAINNLQSTFSGFGFVSGDNVFKIVDSPHPVKV 264
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGF 299
+ M++ EG + A L++L+DLGYS DII+T+F++ K ++EH KLEF+KE GF
Sbjct: 265 QAMLKACYEGNVNSALDILRELWDLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGF 324
Query: 300 AHMRICDGVGSYLQLCGLLAKL 321
HM++ +GV + LQL G + +L
Sbjct: 325 THMKVLEGVQTLLQLSGCVVRL 346
>gi|270015972|gb|EFA12420.1| replication factor C 40kD subunit [Tribolium castaneum]
Length = 512
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 191/312 (61%), Positives = 248/312 (79%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
A ++PW+EKYRP +IVGN D RL +IA+ GN+PNLI+AGPPG GKTT+IL LA
Sbjct: 191 ADNLPWIEKYRPQTFQEIVGNEDTTNRLSVIAKQGNLPNLIIAGPPGVGKTTTILCLARI 250
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
LLGP +++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLPPG+HK+++LDE DSMT GAQQ
Sbjct: 251 LLGPAFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIIILDEVDSMTEGAQQ 310
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRRTMEIYSN+TRFALACN S K+IE IQSRCAI+R+SRL+D ++L+R++ V Q+E V
Sbjct: 311 ALRRTMEIYSNTTRFALACNYSEKVIEAIQSRCAILRYSRLTDAQVLARVIQVCQQESVE 370
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
Y +GLEAI+FTA GDMRQALNNLQ+T++GF VN NV KVCD+PHP+ +K+M+ + +
Sbjct: 371 YTQDGLEAIVFTAQGDMRQALNNLQSTFNGFGVVNSTNVLKVCDEPHPMLIKDMLNSCVT 430
Query: 250 GKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
G A + L+ LGY+ DII +F++ KN +M E LKL F+K+ G HMRI DG+
Sbjct: 431 GDVRKAFKIVDHLWSLGYAAEDIIKNIFKVCKNMDMEESLKLAFIKQIGVTHMRIVDGLC 490
Query: 310 SYLQLCGLLAKL 321
S +Q+ GL+++L
Sbjct: 491 SLVQMSGLISRL 502
>gi|344303413|gb|EGW33662.1| hypothetical protein SPAPADRAFT_59031 [Spathaspora passalidarum
NRRL Y-27907]
Length = 324
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 196/320 (61%), Positives = 254/320 (79%), Gaps = 2/320 (0%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
S+ + ++PWVEKYRP K+ DIVGN + V RL IIA+DGNMPN+I++G PG GKTTS+
Sbjct: 2 STGTKVTLELPWVEKYRPYKLQDIVGNEETVERLKIIAKDGNMPNMIISGLPGIGKTTSV 61
Query: 64 LALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM 123
LAHELLG Y +A +ELNASDDRGIDVVRNKIK FAQ K+ LPPG+HK+++LDEADSM
Sbjct: 62 HCLAHELLGEYYHQATLELNASDDRGIDVVRNKIKQFAQTKIVLPPGRHKIIILDEADSM 121
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T GAQQALRRTMEIYSNSTRFA ACN SSKIIEP+QSRCAI+R+++L+DEE+L+RL+ +
Sbjct: 122 TPGAQQALRRTMEIYSNSTRFAFACNQSSKIIEPLQSRCAILRYNKLADEEVLARLLEIA 181
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
+ E+V Y EGL+A+IFTA+GDMRQA+NNLQ+T +GF FVN NVFK+ DQPHPL ++N+
Sbjct: 182 KMEEVKYNSEGLQALIFTAEGDMRQAINNLQSTVAGFGFVNDVNVFKIVDQPHPLVIQNI 241
Query: 244 VRNVLEGK-FDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAH 301
+ + ++ K D A L L+ GYS DI+T+ F++ K ++ E +L+ +KE GF H
Sbjct: 242 LLSCVKDKDLDKAMELLDSLWSKGYSAIDIVTSTFKVAKTIPDINEQTRLDVIKEIGFVH 301
Query: 302 MRICDGVGSYLQLCGLLAKL 321
MRI +GV +YLQLCG+ AK+
Sbjct: 302 MRILEGVSTYLQLCGMYAKI 321
>gi|315044711|ref|XP_003171731.1| replication factor C subunit 4 [Arthroderma gypseum CBS 118893]
gi|311344074|gb|EFR03277.1| replication factor C subunit 4 [Arthroderma gypseum CBS 118893]
Length = 354
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 196/323 (60%), Positives = 259/323 (80%), Gaps = 3/323 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A S + Y++PWVEKYRP + D+VGN + + RL IIARDGNMP++I++G PG GKTT
Sbjct: 17 ADLSGAPVNYELPWVEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTT 76
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA +LLG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+HK+V+LDEAD
Sbjct: 77 SILCLARQLLGDTYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKLVILDEAD 136
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT+GAQQALRRTMEI+S +TRFA ACN S+KIIEP+QSRCAI+R+SRL+D +++ RLM
Sbjct: 137 SMTSGAQQALRRTMEIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVVKRLMQ 196
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ + EKV Y +G+ A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVF+V D PHP+ V+
Sbjct: 197 ICEAEKVKYSDDGIAALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPVKVQ 256
Query: 242 NMVRNVLEGKFDDACSGLKQLY--DLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAG 298
M++ EGK D A L +L+ +LGYS DII+T+FR+ K ++EH KLEF+KE G
Sbjct: 257 AMIKACWEGKVDIALDTLNELWYVELGYSAHDIISTMFRVTKTIPNLSEHSKLEFIKEIG 316
Query: 299 FAHMRICDGVGSYLQLCGLLAKL 321
F HMRI +G+ + +QL G +AKL
Sbjct: 317 FTHMRILEGLQTLVQLSGCIAKL 339
>gi|346974683|gb|EGY18135.1| replication factor C subunit 4 [Verticillium dahliae VdLs.17]
Length = 361
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 188/322 (58%), Positives = 262/322 (81%), Gaps = 1/322 (0%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
++++++ + Y++PWVEKYRP + D+VGN + + RL IIA++GNMP++I++G PG GKT
Sbjct: 25 VSTTANGAPTYELPWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKT 84
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TS+L LA +LLG +Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLP G+HK+V+LDEA
Sbjct: 85 TSVLCLARQLLGESYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLVILDEA 144
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT+GAQQALRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+R+ RL+D +++ RLM
Sbjct: 145 DSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYGRLTDAQVVKRLM 204
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+++ E V Y +GL A++F+A+GDMRQA+NNLQ+T+SGF FV+ +NVFK+ D PHP+ V
Sbjct: 205 QIIEAESVQYSDDGLAALVFSAEGDMRQAINNLQSTFSGFGFVSGDNVFKIVDSPHPVKV 264
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGF 299
+ M++ EG + A L++L+DLGYS DII+T+F++ K ++EH KLEF+KE GF
Sbjct: 265 QAMLKACYEGNVNSALDILRELWDLGYSSHDIISTMFKVTKTIPTLSEHSKLEFIKEIGF 324
Query: 300 AHMRICDGVGSYLQLCGLLAKL 321
HM++ +GV + LQL G + +L
Sbjct: 325 THMKVLEGVQTLLQLSGCVVRL 346
>gi|261187582|ref|XP_002620210.1| activator 1 37 kDa subunit [Ajellomyces dermatitidis SLH14081]
gi|239594101|gb|EEQ76682.1| activator 1 37 kDa subunit [Ajellomyces dermatitidis SLH14081]
gi|239608919|gb|EEQ85906.1| activator 1 37 kDa subunit [Ajellomyces dermatitidis ER-3]
gi|327354067|gb|EGE82924.1| replication factor C subunit 4 [Ajellomyces dermatitidis ATCC
18188]
Length = 354
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 193/312 (61%), Positives = 253/312 (81%), Gaps = 1/312 (0%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
Y++PWVEKYRP + D+VGN + + RL IIARDGNMP++I++G PG GKTTSIL LA ++
Sbjct: 26 YELPWVEKYRPVFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQM 85
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLP G+HK+V+LDEADSMT+GAQQA
Sbjct: 86 LGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRHKLVILDEADSMTSGAQQA 145
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIYS +TRFA ACN S+KIIEP+QSRCAI+R++RL+D ++L RL + + E V +
Sbjct: 146 LRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVLKRLTQICEAENVKH 205
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+GL A+IF+A+GDMRQA+NNLQ+T++GF FV+ +NVF+V D PHP+ V+ M++ EG
Sbjct: 206 SEDGLAALIFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPHPVKVQAMIKACWEG 265
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVG 309
+ D A L +L+DLGYS DII+T+FR+ K ++EH KLEF+KE GF HMRI +GV
Sbjct: 266 RIDVALDTLNELWDLGYSSHDIISTMFRVTKTIPTLSEHAKLEFIKEIGFTHMRILEGVQ 325
Query: 310 SYLQLCGLLAKL 321
+ +QL G +AKL
Sbjct: 326 TLVQLSGCVAKL 337
>gi|91095205|ref|XP_967947.1| PREDICTED: similar to replication factor C subunit 2 [Tribolium
castaneum]
Length = 344
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 191/314 (60%), Positives = 249/314 (79%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
A ++PW+EKYRP +IVGN D RL +IA+ GN+PNLI+AGPPG GKTT+IL LA
Sbjct: 23 ADNLPWIEKYRPQTFQEIVGNEDTTNRLSVIAKQGNLPNLIIAGPPGVGKTTTILCLARI 82
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
LLGP +++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLPPG+HK+++LDE DSMT GAQQ
Sbjct: 83 LLGPAFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIIILDEVDSMTEGAQQ 142
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRRTMEIYSN+TRFALACN S K+IE IQSRCAI+R+SRL+D ++L+R++ V Q+E V
Sbjct: 143 ALRRTMEIYSNTTRFALACNYSEKVIEAIQSRCAILRYSRLTDAQVLARVIQVCQQESVE 202
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
Y +GLEAI+FTA GDMRQALNNLQ+T++GF VN NV KVCD+PHP+ +K+M+ + +
Sbjct: 203 YTQDGLEAIVFTAQGDMRQALNNLQSTFNGFGVVNSTNVLKVCDEPHPMLIKDMLNSCVT 262
Query: 250 GKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
G A + L+ LGY+ DII +F++ KN +M E LKL F+K+ G HMRI DG+
Sbjct: 263 GDVRKAFKIVDHLWSLGYAAEDIIKNIFKVCKNMDMEESLKLAFIKQIGVTHMRIVDGLC 322
Query: 310 SYLQLCGLLAKLSI 323
S +Q+ GL+++L +
Sbjct: 323 SLVQMSGLISRLCM 336
>gi|66513962|ref|XP_623937.1| PREDICTED: replication factor C subunit 2 [Apis mellifera]
Length = 350
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 195/309 (63%), Positives = 245/309 (79%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PW+EKYRP DIVGN D V+RL + A+ GN PN+I+AGPPG GKTT+IL LA LLG
Sbjct: 36 LPWIEKYRPQVFSDIVGNEDTVSRLSVFAQQGNCPNIIIAGPPGVGKTTTILCLARILLG 95
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
P ++EAV+ELNAS+DRGIDVVRNKIKMFAQK+V LP GKHK+++LDEADSMTAGAQQALR
Sbjct: 96 PIFKEAVLELNASNDRGIDVVRNKIKMFAQKRVNLPKGKHKIIILDEADSMTAGAQQALR 155
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTMEIYSN+TRFALACN S KIIEPIQSRCA++R+ +LSD +IL++++ + ++E V +
Sbjct: 156 RTMEIYSNTTRFALACNSSDKIIEPIQSRCAMLRYGKLSDAQILAKIIDICKKEDVSHTD 215
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GLEAI+FTA GDMRQALNNLQ+T++GF VN ENVFKVCD+PHPL VK M+ EG
Sbjct: 216 DGLEAIVFTAQGDMRQALNNLQSTHNGFNHVNSENVFKVCDEPHPLLVKEMLEFCTEGNI 275
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
A ++ L+ +GYS DII +F++ KN + E LKL+F+KE G H+ I DGV S L
Sbjct: 276 SKAYGVMEHLWKMGYSAEDIINNIFKVAKNLLIDETLKLDFVKEIGITHLGIVDGVNSLL 335
Query: 313 QLCGLLAKL 321
Q+ LLA+L
Sbjct: 336 QMNSLLARL 344
>gi|66802182|ref|XP_629875.1| replication factor C subunit [Dictyostelium discoideum AX4]
gi|74851260|sp|Q54E21.1|RFC2_DICDI RecName: Full=Probable replication factor C subunit 2; AltName:
Full=Activator 1 subunit 2
gi|60463272|gb|EAL61464.1| replication factor C subunit [Dictyostelium discoideum AX4]
Length = 338
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 201/313 (64%), Positives = 249/313 (79%), Gaps = 1/313 (0%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + DIVGN + V+RL I++DGN+PN+I++GPPGTGKT+SIL LA LLG
Sbjct: 20 LPWVEKYRPILIKDIVGNEETVSRLESISKDGNLPNIIISGPPGTGKTSSILCLARALLG 79
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
NY+EAV ELNASDDR +DVVR+KIK FA KKVTLP G+HK+++LDE DSMT+GAQQALR
Sbjct: 80 ANYKEAVYELNASDDRTLDVVRDKIKSFAMKKVTLPAGRHKIIILDEVDSMTSGAQQALR 139
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R MEIYS +TRFA ACN S+KIIEPIQSRCA++RF+RLSD +IL+RL VVQ EKVPY
Sbjct: 140 RIMEIYSGTTRFAFACNQSTKIIEPIQSRCAVLRFTRLSDSQILTRLREVVQIEKVPYTD 199
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GL AIIFTA+GDMRQALNNLQAT+SGF +N ENV KVCDQPHPL +K ++ + F
Sbjct: 200 DGLAAIIFTAEGDMRQALNNLQATHSGFGLINAENVTKVCDQPHPLIIKQIIALCAKSDF 259
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVGSY 311
+A LK+L+D GYS DII+ LF I K+ + E+ KLEF+KE GF ++R GV +
Sbjct: 260 KEAYPFLKKLWDDGYSSIDIISALFSITKSSNNIPEYQKLEFLKEIGFCNLRATTGVNTL 319
Query: 312 LQLCGLLAKLSIV 324
+QL GLL+KL +V
Sbjct: 320 VQLTGLLSKLCLV 332
>gi|443732297|gb|ELU17070.1| hypothetical protein CAPTEDRAFT_192756 [Capitella teleta]
Length = 340
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 194/306 (63%), Positives = 246/306 (80%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY 75
VEK+RP + D+VGN + ++RL + A GN+PNLI+AGPPGTGKTTSIL L+ LLG +Y
Sbjct: 21 VEKFRPILLRDVVGNEETISRLQVFAEQGNVPNLIIAGPPGTGKTTSILCLSRALLGASY 80
Query: 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTM 135
++AV+ELNAS+DRGIDVVRNKIKMFAQKKV+LP G+HKV++LDEADSMT GAQQALRRTM
Sbjct: 81 KDAVLELNASNDRGIDVVRNKIKMFAQKKVSLPAGRHKVIILDEADSMTDGAQQALRRTM 140
Query: 136 EIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGL 195
EIYS +TRFALACN S KIIEPIQSRCA++R+S+LSD ++L RL V +E V Y +G+
Sbjct: 141 EIYSKTTRFALACNSSDKIIEPIQSRCAVLRYSKLSDAQLLERLQEVCMKESVSYTEDGM 200
Query: 196 EAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDA 255
EA+IFT+ GDMRQALNNLQ+T GF VN ENVFKVCD+PHP+ VK+M+++ + D A
Sbjct: 201 EAVIFTSQGDMRQALNNLQSTCQGFGHVNSENVFKVCDEPHPMLVKDMLQHCINSDIDAA 260
Query: 256 CSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLC 315
+ L+ LGY+P DI+ +FR+ K ++M E LKLEF+KE GF HM+I +GV S LQ+
Sbjct: 261 YKIMSHLWSLGYAPQDIVGIIFRVAKTHDMPEFLKLEFIKEIGFTHMKIAEGVDSLLQMS 320
Query: 316 GLLAKL 321
GLLA+L
Sbjct: 321 GLLARL 326
>gi|428174860|gb|EKX43753.1| hypothetical protein GUITHDRAFT_140204 [Guillardia theta CCMP2712]
Length = 331
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 192/309 (62%), Positives = 253/309 (81%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
S+++A +PWVEKYRP + ++VGN DAVARL IA+DGNMP+L+L G PG GKTT +LA
Sbjct: 5 SANAAASLPWVEKYRPQTLKEVVGNEDAVARLQAIAKDGNMPHLLLTGSPGIGKTTCVLA 64
Query: 66 LAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
LA ELLG +++E V+ELNASD+RGIDVVRNKIKMFAQ+KVTLPPG+HK+++LDEADSMT+
Sbjct: 65 LARELLGDSFKEGVLELNASDERGIDVVRNKIKMFAQQKVTLPPGRHKIIILDEADSMTS 124
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
+QQA+RRTME+YSN+TRFALACN SS+IIEPIQSRCAI+RF++LSD+E+LSRL + ++
Sbjct: 125 ASQQAMRRTMELYSNTTRFALACNNSSEIIEPIQSRCAILRFAKLSDKELLSRLQDICEK 184
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E+V +GLEA+IFTADGDMRQA+N+LQ+T +GF VNQE+VFKVCDQPHP +V+
Sbjct: 185 EEVLASTDGLEALIFTADGDMRQAVNSLQSTANGFGIVNQESVFKVCDQPHPKTAIQIVK 244
Query: 246 NVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
+ L G +A S L+ L+ GYS DI+ T+F++ +N +M E KL+F+KE G HMR+
Sbjct: 245 SCLTGDIKNAHSKLEDLWQRGYSAQDIVQTIFKVTRNMDMPEKSKLDFLKEIGIYHMRVL 304
Query: 306 DGVGSYLQL 314
+GV S +Q+
Sbjct: 305 EGVDSLVQV 313
>gi|302510945|ref|XP_003017424.1| hypothetical protein ARB_04305 [Arthroderma benhamiae CBS 112371]
gi|302657578|ref|XP_003020508.1| hypothetical protein TRV_05402 [Trichophyton verrucosum HKI 0517]
gi|291180995|gb|EFE36779.1| hypothetical protein ARB_04305 [Arthroderma benhamiae CBS 112371]
gi|291184348|gb|EFE39890.1| hypothetical protein TRV_05402 [Trichophyton verrucosum HKI 0517]
Length = 362
Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust.
Identities = 196/331 (59%), Positives = 259/331 (78%), Gaps = 11/331 (3%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A S + Y++PWVEKYRP + D+VGN + + RL IIARDGNMP++I++G PG GKTT
Sbjct: 17 ADVSGAPVNYELPWVEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTT 76
Query: 62 SILALAHELLGPNYREAVMELNASDDRG----------IDVVRNKIKMFAQKKVTLPPGK 111
SIL LA +LLG Y+EAV+ELNASD+RG IDVVRN+IK FAQKKVTLPPG+
Sbjct: 77 SILCLARQLLGDTYKEAVLELNASDERGLLNYALNLFRIDVVRNRIKGFAQKKVTLPPGR 136
Query: 112 HKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLS 171
HK+V+LDEADSMT+GAQQALRRTMEI+S +TRFA ACN S+KIIEP+QSRCAI+R+SRL+
Sbjct: 137 HKLVILDEADSMTSGAQQALRRTMEIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLT 196
Query: 172 DEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKV 231
D +++ RLM + + EKV Y +G+ A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVF+V
Sbjct: 197 DAQVVKRLMQICEAEKVKYSDDGIAALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRV 256
Query: 232 CDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLK 290
D PHP+ V+ M++ EGK D A L +L++LGYS DII+T+FR+ K ++EH K
Sbjct: 257 VDSPHPVKVQAMIKACWEGKVDIALDTLNELWELGYSAHDIISTMFRVTKTIPNLSEHSK 316
Query: 291 LEFMKEAGFAHMRICDGVGSYLQLCGLLAKL 321
LEF+KE GF HMRI +G+ + +QL G +AKL
Sbjct: 317 LEFIKEIGFTHMRILEGLQTLVQLSGCIAKL 347
>gi|348679159|gb|EGZ18976.1| hypothetical protein PHYSODRAFT_332696 [Phytophthora sojae]
Length = 326
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/312 (65%), Positives = 245/312 (78%), Gaps = 1/312 (0%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
++ PWVEKYRP + D+VGN D VA L +A+ GNM NLIL+GPPGTGKTTSIL LA EL
Sbjct: 5 FEAPWVEKYRPRVLADVVGNRDTVASLQAMAQAGNMTNLILSGPPGTGKTTSILCLAREL 64
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LG + ++AV+ELNASDDRGID VR+KIKMFAQ+KVTLPPG+HK+V+LDEADSMTA AQQA
Sbjct: 65 LGASMKQAVLELNASDDRGIDTVRSKIKMFAQQKVTLPPGRHKIVILDEADSMTAAAQQA 124
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEI+S +TRFALACN S+KIIEPIQSRCAI+R++RL DE +L RL+ V QEEKV Y
Sbjct: 125 LRRTMEIFSATTRFALACNNSTKIIEPIQSRCAILRYTRLPDEMLLRRLLTVCQEEKVGY 184
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
EGL A+IFTA+GDMR ALNNLQAT SGF FV+ ENVFKVCDQPHP V+ ++ +G
Sbjct: 185 KEEGLAALIFTAEGDMRNALNNLQATASGFGFVSDENVFKVCDQPHPAVVREILNQCAKG 244
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMA-EHLKLEFMKEAGFAHMRICDGVG 309
+ D A +L+ GYS DII T+FR+ K M E LKLEF+K G HM I DGV
Sbjct: 245 ELDGAEKQAVELWKSGYSSLDIIGTIFRVCKALPMEDEKLKLEFIKLIGATHMCIADGVS 304
Query: 310 SYLQLCGLLAKL 321
+ LQ+ GL+A+L
Sbjct: 305 TLLQIHGLVARL 316
>gi|195337341|ref|XP_002035287.1| GM14011 [Drosophila sechellia]
gi|194128380|gb|EDW50423.1| GM14011 [Drosophila sechellia]
Length = 331
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 196/314 (62%), Positives = 244/314 (77%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PW+EKYRP K +IVGN D VARL + A GN PN+I+AGPPG GKTT+I LA LLG
Sbjct: 16 LPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLG 75
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+Y+EAV+ELNAS++RGIDVVRNKIKMFAQ+KVTLP G+HK+V+LDEADSMT GAQQALR
Sbjct: 76 DSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALR 135
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTMEIYS++TRFALACN S KIIEPIQSRCA++RF++LSD ++L++L+ V + EK+ Y
Sbjct: 136 RTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTE 195
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GLEAI+FTA GDMRQ LNNLQ+T GF + ENVFKVCD+PHP ++ M+ +
Sbjct: 196 DGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAANDI 255
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
A L +L+ LGYSP DII +FR+ K + EHLKL+F++E G HM+I DG+ S L
Sbjct: 256 HKAYKILAKLWKLGYSPEDIIANIFRVCKRINIDEHLKLDFIREIGMTHMKIIDGINSLL 315
Query: 313 QLCGLLAKLSIVRE 326
QL LLAKL IV E
Sbjct: 316 QLTALLAKLCIVAE 329
>gi|170027981|ref|XP_001841875.1| replication factor C subunit 2 [Culex quinquefasciatus]
gi|167868345|gb|EDS31728.1| replication factor C subunit 2 [Culex quinquefasciatus]
Length = 344
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 194/310 (62%), Positives = 249/310 (80%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PW+EKYRP K +IVGN D V+RLG+ A GN PN+I+AGPPG GKTT+IL LA LL
Sbjct: 27 NLPWIEKYRPQKFEEIVGNEDTVSRLGVFATQGNAPNIIIAGPPGVGKTTTILCLARILL 86
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G N+REAV+ELNAS++RGIDVVRNKIKMFAQ+KVTLP G+HK+V+LDEADSMT GAQQAL
Sbjct: 87 GENFREAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQAL 146
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTMEIYSN+TRFALACN S KIIEPIQSRCA++R+S+LSD ++L++L+ + Q+E + Y
Sbjct: 147 RRTMEIYSNTTRFALACNTSEKIIEPIQSRCAMLRYSKLSDSQVLAKLIEICQKEALSYD 206
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+GLEAI+FTA GDMRQALNNLQ+T +GF ++ NVFKVCD+PHP+ V++M+ + ++G
Sbjct: 207 EDGLEAIVFTAQGDMRQALNNLQSTANGFGHISGANVFKVCDEPHPMLVQDMLEHCVKGD 266
Query: 252 FDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A + +L+ LGY+ DII +FR+ K M E LKL F++E G HM+I DG+ S
Sbjct: 267 VHKAYKIMAKLWRLGYAAEDIIGNIFRVCKRMNMNEKLKLCFIREIGETHMKIVDGLNSL 326
Query: 312 LQLCGLLAKL 321
LQ+ GLLAKL
Sbjct: 327 LQMSGLLAKL 336
>gi|195587662|ref|XP_002083580.1| GD13291 [Drosophila simulans]
gi|194195589|gb|EDX09165.1| GD13291 [Drosophila simulans]
Length = 331
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 196/314 (62%), Positives = 244/314 (77%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PW+EKYRP K +IVGN D VARL + A GN PN+I+AGPPG GKTT+I LA LLG
Sbjct: 16 LPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLG 75
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+Y+EAV+ELNAS++RGIDVVRNKIKMFAQ+KVTLP G+HK+V+LDEADSMT GAQQALR
Sbjct: 76 DSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALR 135
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTMEIYS++TRFALACN S KIIEPIQSRCA++RF++LSD ++L++L+ V + EK+ Y
Sbjct: 136 RTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTE 195
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GLEAI+FTA GDMRQ LNNLQ+T GF + ENVFKVCD+PHP ++ M+ +
Sbjct: 196 DGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAANDI 255
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
A L +L+ LGYSP DII +FR+ K + EHLKL+F++E G HM+I DG+ S L
Sbjct: 256 HKAYKILAKLWKLGYSPEDIIANIFRVCKRINIDEHLKLDFIREIGMTHMKIIDGINSLL 315
Query: 313 QLCGLLAKLSIVRE 326
QL LLAKL IV E
Sbjct: 316 QLTALLAKLCIVAE 329
>gi|380013855|ref|XP_003690961.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 2-like
[Apis florea]
Length = 351
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 194/309 (62%), Positives = 245/309 (79%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PW+EKYRP DIVGN D V+RL + A+ GN PN+I+AGPPG GKTT+IL LA LLG
Sbjct: 37 LPWIEKYRPQIFSDIVGNEDTVSRLSVFAQQGNCPNIIIAGPPGVGKTTTILCLARILLG 96
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
P ++EAV+ELNAS+DRGIDVVRNKIKMFAQK+V LP GKHK+++LDEADSMT+GAQQALR
Sbjct: 97 PIFKEAVLELNASNDRGIDVVRNKIKMFAQKRVNLPKGKHKIIILDEADSMTSGAQQALR 156
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTMEIYSN+TRFALACN S KIIEPIQSRCA++R+ +LSD +IL++++ + ++E V +
Sbjct: 157 RTMEIYSNTTRFALACNSSDKIIEPIQSRCAMLRYGKLSDAQILAKIIDICKKEDVSHTD 216
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GLEAI+FTA GDMRQALNNLQ+T++GF VN ENVFKVCD+PHPL VK M+ EG
Sbjct: 217 DGLEAIVFTAQGDMRQALNNLQSTHNGFNHVNSENVFKVCDEPHPLLVKEMLEFCKEGNI 276
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
A ++ L+ +GYS DII +F++ KN + E LKL+F+KE G H+ I DGV S L
Sbjct: 277 SKAYGVMEHLWKMGYSAEDIINNIFKVAKNLLIDETLKLDFVKEIGITHLGIVDGVNSLL 336
Query: 313 QLCGLLAKL 321
Q+ LLA+L
Sbjct: 337 QMNSLLARL 345
>gi|158285610|ref|XP_308395.4| AGAP007477-PA [Anopheles gambiae str. PEST]
gi|157020075|gb|EAA04621.4| AGAP007477-PA [Anopheles gambiae str. PEST]
Length = 341
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/329 (59%), Positives = 258/329 (78%), Gaps = 8/329 (2%)
Query: 1 MASSSSSSSA--------YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILA 52
+AS+SS+ A +PW+EKYRP + +IVGN + VARLGI A GN PN+I+A
Sbjct: 5 VASTSSAPGAPKEAEGKKKSLPWIEKYRPQRFEEIVGNEETVARLGIFASQGNAPNIIIA 64
Query: 53 GPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH 112
GPPG GKTT+IL LA LLGPN+REAV+ELNAS++RGIDVVR+KIKMFAQ+KVTLP G+H
Sbjct: 65 GPPGVGKTTTILCLARILLGPNFREAVLELNASNERGIDVVRSKIKMFAQQKVTLPRGRH 124
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT GAQQALRRTMEIYSN+TRFALACN S KIIEPIQSRCA++RFS+LSD
Sbjct: 125 KIVILDEADSMTEGAQQALRRTMEIYSNTTRFALACNTSEKIIEPIQSRCAMLRFSKLSD 184
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVC 232
++L++++ + Q E + Y +GLEAI+FTA GDMRQALNNLQ+T +GF ++ NVFKVC
Sbjct: 185 AQVLAKVVEICQHENLSYDEDGLEAIVFTAQGDMRQALNNLQSTANGFGHISGANVFKVC 244
Query: 233 DQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLE 292
D+PHPL V++M+++ ++G A + +L+ LGY+ DII +FR+ + +M E LKL
Sbjct: 245 DEPHPLLVQDMLQHCVKGDIHKAYKIMSKLWKLGYAAEDIIGNVFRVCRRMDMNEKLKLY 304
Query: 293 FMKEAGFAHMRICDGVGSYLQLCGLLAKL 321
F++E G HM+I DG+ S LQ+ GLLA++
Sbjct: 305 FIREIGETHMKIVDGLNSLLQMSGLLARM 333
>gi|56754473|gb|AAW25424.1| SJCHGC05804 protein [Schistosoma japonicum]
Length = 335
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 189/308 (61%), Positives = 248/308 (80%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP ++ DIVGN + ++RL + +R+GN+PN+I+AGPPG GKTTSIL LA +L
Sbjct: 21 PWVEKYRPIELKDIVGNENTISRLSVFSREGNLPNIIIAGPPGCGKTTSILCLARTMLKD 80
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
Y++AV+E+NAS++RGI+VVR KIKMFAQKKV+LP G+ K+++LDEADSMT GAQQALRR
Sbjct: 81 AYKDAVLEMNASNERGIEVVRTKIKMFAQKKVSLPEGRQKMIILDEADSMTEGAQQALRR 140
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
ME+YS +TRFALACN SSK+IEPIQSRCA++R++RL+ +I++RL+ V E V Y E
Sbjct: 141 IMELYSRTTRFALACNDSSKLIEPIQSRCAVLRYTRLTSAQIMARLLEVSHSEGVSYTEE 200
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
GLEAI+FTADGDMRQALNNLQ+TY GF V+ +NVFKVCD+PHP+ +K ++ + G+
Sbjct: 201 GLEAIVFTADGDMRQALNNLQSTYQGFGMVSSDNVFKVCDEPHPMLIKQLIDHCSNGELS 260
Query: 254 DACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A L+ L+ LGYS DIIT FR+IKN+ M E+LKL F+KE G H+RI +G+G+Y+Q
Sbjct: 261 AAHKILRHLWTLGYSAEDIITITFRVIKNHPMEEYLKLGFIKEVGLTHLRISEGLGTYVQ 320
Query: 314 LCGLLAKL 321
L GLLA+L
Sbjct: 321 LAGLLARL 328
>gi|340729148|ref|XP_003402870.1| PREDICTED: replication factor C subunit 2-like [Bombus terrestris]
Length = 351
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 193/310 (62%), Positives = 244/310 (78%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PW+EKYRP DIVGN D V+RL + A GN PN+I+AGPPG GKTT+IL LA LL
Sbjct: 35 NLPWIEKYRPQIFSDIVGNEDTVSRLSVFAEHGNCPNIIIAGPPGVGKTTTILCLARILL 94
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
GP ++EAV+ELNAS++RGIDVVRNKIKMFAQKKV L GKHK+++LDEADSMT GAQQAL
Sbjct: 95 GPVFKEAVLELNASNERGIDVVRNKIKMFAQKKVNLAKGKHKIIILDEADSMTDGAQQAL 154
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTMEIYSN+TRFALACN S KIIEPIQSRCA++R+ +LSD +IL++++ V Q+E V +
Sbjct: 155 RRTMEIYSNTTRFALACNTSEKIIEPIQSRCAMLRYGKLSDAQILAKIIEVCQKEDVSHT 214
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+GLEAI+FTA GDMRQALNNLQ+TY+GF VN ENVFKVCD+PHPL VK M+ +GK
Sbjct: 215 DDGLEAIVFTAQGDMRQALNNLQSTYNGFGHVNSENVFKVCDEPHPLLVKEMLELCAQGK 274
Query: 252 FDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A ++ L+ +GYS D+++ +FR+ N + E LKL+F+KE G H+ I DG+ S
Sbjct: 275 ISKAYGIMEHLWKMGYSAEDLVSNIFRVCTNLSIEEPLKLDFIKEIGITHLGIVDGINSL 334
Query: 312 LQLCGLLAKL 321
LQ+ LLA+L
Sbjct: 335 LQMNSLLARL 344
>gi|307209915|gb|EFN86693.1| Replication factor C subunit 2 [Harpegnathos saltator]
Length = 351
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 191/314 (60%), Positives = 248/314 (78%)
Query: 8 SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
S + +PW+EKYRP DIVGN D V+RL + A+ GN PN+I+AGPPG GKTT+IL LA
Sbjct: 31 SKSSSLPWIEKYRPQVFPDIVGNEDTVSRLAVFAQHGNTPNIIIAGPPGVGKTTTILCLA 90
Query: 68 HELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGA 127
LLGP ++EAV+ELNAS++RGIDVVRNKIKMFAQKKV LP GKHK+++LDEADSMT GA
Sbjct: 91 RILLGPAFKEAVLELNASNERGIDVVRNKIKMFAQKKVNLPKGKHKIIILDEADSMTDGA 150
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
QQALRRTMEIYS++TRFALACN + +IIEPIQSRCA++R+ +L+D +IL++++ V ++E
Sbjct: 151 QQALRRTMEIYSHTTRFALACNNTEEIIEPIQSRCAMLRYGKLTDAQILAKVLEVCEKEN 210
Query: 188 VPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNV 247
V Y +G+EAI+FTA GDMRQALNNLQ+TY+GF VN ENVFKVCD+PHPL VK M+ +
Sbjct: 211 VSYTDDGMEAIVFTAQGDMRQALNNLQSTYNGFNHVNGENVFKVCDEPHPLIVKEMLDDC 270
Query: 248 LEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDG 307
++G AC+ + + +GYS DII+ +F++ K + M E LKL F+KE G HM I +G
Sbjct: 271 IKGDVSKACTVMDHFWKMGYSAEDIISNVFKVCKIHAMDEKLKLMFVKEIGITHMGIVEG 330
Query: 308 VGSYLQLCGLLAKL 321
+ S LQL L+A+L
Sbjct: 331 INSLLQLHALVARL 344
>gi|301094042|ref|XP_002997865.1| replication factor C subunit 2 [Phytophthora infestans T30-4]
gi|262109788|gb|EEY67840.1| replication factor C subunit 2 [Phytophthora infestans T30-4]
Length = 327
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/320 (64%), Positives = 247/320 (77%), Gaps = 1/320 (0%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
++ PWVEKYRP + D+VGN D +A L +A+ GNM NLIL+GPPGTGKTTSIL LA EL
Sbjct: 5 FEAPWVEKYRPRVLADVVGNRDTIASLQAMAKAGNMTNLILSGPPGTGKTTSILCLAREL 64
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LG + ++AV+ELNASDDRGI+ VR+KIKMFAQ+KVTLPPG+HK+V+LDEADSMTA AQQA
Sbjct: 65 LGTSLKQAVLELNASDDRGINTVRSKIKMFAQQKVTLPPGRHKIVILDEADSMTAAAQQA 124
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEI+S +TRFALACN S+KIIEPIQSRCAI+RF+RL DE +L RL+ V QEE V Y
Sbjct: 125 LRRTMEIFSATTRFALACNNSTKIIEPIQSRCAILRFTRLPDEMLLRRLLTVCQEENVGY 184
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
EGL A+IFTA+GDMR ALNNLQAT SGF FV+ ENVFKVCDQPHP V+ ++ + +G
Sbjct: 185 KEEGLAALIFTAEGDMRNALNNLQATASGFSFVSDENVFKVCDQPHPAVVREILNHCAKG 244
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEM-AEHLKLEFMKEAGFAHMRICDGVG 309
+ D A L+ GYS DII T+FR+ K M E LKLEF+K G HM I DGV
Sbjct: 245 ELDGAEKQAVDLWKSGYSSLDIIGTIFRVCKALPMDDEKLKLEFIKLIGATHMCIADGVS 304
Query: 310 SYLQLCGLLAKLSIVRETAK 329
+ LQ+ GL+A+L V AK
Sbjct: 305 TLLQIHGLVARLCSVALAAK 324
>gi|350401447|ref|XP_003486155.1| PREDICTED: replication factor C subunit 2-like [Bombus impatiens]
Length = 351
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 193/310 (62%), Positives = 244/310 (78%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PW+EKYRP DIVGN D V+RL + A GN PN+I+AGPPG GKTT+IL LA LL
Sbjct: 35 NLPWIEKYRPQIFSDIVGNEDTVSRLSVFAEHGNCPNIIIAGPPGVGKTTTILCLARILL 94
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
GP ++EAV+ELNAS++RGIDVVRNKIKMFAQK+V L GKHK+++LDEADSMT GAQQAL
Sbjct: 95 GPAFKEAVLELNASNERGIDVVRNKIKMFAQKRVNLAKGKHKIIILDEADSMTDGAQQAL 154
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTMEIYSN+TRFALACN S KIIEPIQSRCA++R+ +LSD +IL++++ V Q+E V +
Sbjct: 155 RRTMEIYSNTTRFALACNTSEKIIEPIQSRCAMLRYGKLSDAQILAKIIEVCQKEDVSHT 214
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+GLEAI+FTA GDMRQALNNLQ+TY+GF VN ENVFKVCD+PHPL VK M+ +GK
Sbjct: 215 DDGLEAIVFTAQGDMRQALNNLQSTYNGFGHVNSENVFKVCDEPHPLLVKEMLELCAQGK 274
Query: 252 FDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A ++ L+ +GYS D+I+ +FR+ N + E LKL+F+KE G H+ I DG+ S
Sbjct: 275 ISKAYGIMEHLWKMGYSAEDLISNIFRVCTNLSIEEPLKLDFIKEIGITHLGIVDGINSL 334
Query: 312 LQLCGLLAKL 321
LQ+ LLA+L
Sbjct: 335 LQMNSLLARL 344
>gi|145353045|ref|XP_001420841.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581076|gb|ABO99134.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 334
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 196/312 (62%), Positives = 247/312 (79%), Gaps = 3/312 (0%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + D+VGN DAV R+ + R G MPNLI +GPPG GKT++I LA ELLG
Sbjct: 1 MPWVEKYRPKTLDDLVGNDDAVDRMRTMVRSGFMPNLIFSGPPGCGKTSAIGVLARELLG 60
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
Y+EAV+E+NASD+RGIDVVRNKIKMFAQKKVTL PG+ K+V+LDEADSMT AQQA+R
Sbjct: 61 DKYKEAVLEMNASDERGIDVVRNKIKMFAQKKVTLAPGRTKLVILDEADSMTTAAQQAMR 120
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTMEIYS +TRFALACN S K+IEPIQSRCAIVRF +L+D ++L RLM VV+ EKV YVP
Sbjct: 121 RTMEIYSATTRFALACNTSEKVIEPIQSRCAIVRFGKLTDAQVLKRLMTVVEAEKVTYVP 180
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GLEAI+FTADGDMRQALNNLQ+T GF VN+ENVF+VCDQPHP V++ +L+G
Sbjct: 181 KGLEAIVFTADGDMRQALNNLQSTALGFGMVNEENVFRVCDQPHPNIVRDAFSFILQGNV 240
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYE---MAEHLKLEFMKEAGFAHMRICDGVG 309
DDA + LK L+D GYS DII T++R+ KN++ M E +KLE ++ GF H+R+ +G
Sbjct: 241 DDAYARLKSLHDQGYSVFDIIGTMYRVCKNFDDTAMPEFIKLELIRIIGFTHLRLSEGCA 300
Query: 310 SYLQLCGLLAKL 321
+ +Q+ G +A++
Sbjct: 301 TMIQIGGGVARM 312
>gi|366997707|ref|XP_003683590.1| hypothetical protein TPHA_0A00710 [Tetrapisispora phaffii CBS 4417]
gi|357521885|emb|CCE61156.1| hypothetical protein TPHA_0A00710 [Tetrapisispora phaffii CBS 4417]
Length = 325
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/320 (62%), Positives = 252/320 (78%), Gaps = 5/320 (1%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
S ++ + ++PWVEKYRP + DIVGN D + RL IA+DGNMP++I++G PG GKTTSI
Sbjct: 2 SKAALSLELPWVEKYRPHLLKDIVGNEDTIERLKHIAKDGNMPHMIISGLPGIGKTTSIH 61
Query: 65 ALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
LAHELLG +Y +AV+ELNASDDRGIDVVRN+IK FAQKK LP GKHK+++LDEADSMT
Sbjct: 62 CLAHELLGDSYSQAVLELNASDDRGIDVVRNQIKHFAQKKCHLPTGKHKIIILDEADSMT 121
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AGAQQALRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+R+++LSDE++L RL+ + +
Sbjct: 122 AGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYTKLSDEQVLKRLLEITK 181
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
E V Y +GLEA+IFTA+GDMRQA+NNLQ+T +G VN +NVFK+ D PHPL VK M
Sbjct: 182 AEDVKYTNDGLEALIFTAEGDMRQAINNLQSTVAGHSLVNGDNVFKIVDSPHPLIVKKM- 240
Query: 245 RNVLEGKFDDACSGL-KQLYDLGYSPTDIITTLFRIIKN-YEMAEHLKLEFMKEAGFAHM 302
+L DD+ L K+L+D GYS DI+TT FR+ K YE+ E +L+ +KE G HM
Sbjct: 241 --ILAPTLDDSLLILRKELWDKGYSAVDIVTTSFRVTKTLYELKEPQRLDMIKEIGITHM 298
Query: 303 RICDGVGSYLQLCGLLAKLS 322
RI +GVG+YLQL ++AKLS
Sbjct: 299 RILEGVGTYLQLAAMMAKLS 318
>gi|195491632|ref|XP_002093645.1| GE20646 [Drosophila yakuba]
gi|194179746|gb|EDW93357.1| GE20646 [Drosophila yakuba]
Length = 331
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 195/314 (62%), Positives = 244/314 (77%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PW+EKYRP K +IVGN D VARL + A GN PN+I+AGPPG GKTT+I LA LLG
Sbjct: 16 LPWIEKYRPAKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLG 75
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+Y+EAV+ELNAS++RGIDVVRNKIKMFAQ+KVTLP G+HK+V+LDEADSMT GAQQALR
Sbjct: 76 DSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALR 135
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTMEIYS++TRFALACN S KIIEPIQSRCA++RF++LSD ++L++L+ V + EK+ Y
Sbjct: 136 RTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTE 195
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GLEAI+FTA GDMRQ LNNLQ+T GF + ENVFKVCD+PHP ++ M+ +
Sbjct: 196 DGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAANDI 255
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
A L +L+ LGYSP DII +FR+ K + EH+KL+F++E G HM+I DG+ S L
Sbjct: 256 HKAYKILAKLWKLGYSPEDIIGNIFRVCKRINIDEHMKLDFIREIGITHMKIVDGINSLL 315
Query: 313 QLCGLLAKLSIVRE 326
QL LLAKL IV E
Sbjct: 316 QLTALLAKLCIVAE 329
>gi|17647857|ref|NP_523915.1| replication factor C subunit 4 [Drosophila melanogaster]
gi|1703054|sp|P53034.1|RFC2_DROME RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 40 kDa subunit; Short=A1 40 kDa
subunit; AltName: Full=Activator 1 subunit 2; AltName:
Full=Replication factor C 40 kDa subunit; Short=RF-C 40
kDa subunit; Short=RFC40; AltName: Full=Replication
factor C subunit 4; Short=DmRfc4
gi|639708|gb|AAB60241.1| rfc40 [Drosophila melanogaster]
gi|7292439|gb|AAF47843.1| replication factor C subunit 4 [Drosophila melanogaster]
gi|20151645|gb|AAM11182.1| LD40483p [Drosophila melanogaster]
gi|220944360|gb|ACL84723.1| RfC40-PA [synthetic construct]
gi|220954324|gb|ACL89705.1| RfC40-PA [synthetic construct]
Length = 331
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 195/314 (62%), Positives = 243/314 (77%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PW+EKYRP K +IVGN D VARL + A GN PN+I+AGPPG GKTT+I LA LLG
Sbjct: 16 LPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLG 75
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+Y+EAV+ELNAS++RGIDVVRNKIKMFAQ+KVTLP G+HK+V+LDEADSMT GAQQALR
Sbjct: 76 DSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALR 135
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTMEIYS++TRFALACN S KIIEPIQSRCA++RF++LSD ++L++L+ V + EK+ Y
Sbjct: 136 RTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTE 195
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GLEAI+FTA GDMRQ LNNLQ+T GF + ENVFKVCD+PHP ++ M+ +
Sbjct: 196 DGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAANDI 255
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
A L +L+ LGYSP DII +FR+ K + EHLKL+F++E G HM+I DG+ S L
Sbjct: 256 HKAYKILAKLWKLGYSPEDIIANIFRVCKRINIDEHLKLDFIREIGITHMKIIDGINSLL 315
Query: 313 QLCGLLAKLSIVRE 326
QL LLAKL I E
Sbjct: 316 QLTALLAKLCIAAE 329
>gi|367013632|ref|XP_003681316.1| hypothetical protein TDEL_0D05210 [Torulaspora delbrueckii]
gi|359748976|emb|CCE92105.1| hypothetical protein TDEL_0D05210 [Torulaspora delbrueckii]
Length = 322
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/315 (62%), Positives = 252/315 (80%), Gaps = 5/315 (1%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP K+ DIVGN + V RL IA+DGNMP++I++G PG GKTTS+ LAHELLG
Sbjct: 11 LPWVEKYRPEKLKDIVGNEETVERLEQIAKDGNMPHMIISGLPGIGKTTSVHCLAHELLG 70
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+Y +AV+ELNASDDRGIDVVRN+IK FAQKK LPPGKHK+++LDEADSMTAGAQQALR
Sbjct: 71 KSYSQAVLELNASDDRGIDVVRNQIKHFAQKKCHLPPGKHKIIILDEADSMTAGAQQALR 130
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME+YSN+TRFA ACN S+KIIEP+QSRCAI+R+S+LSDE++L RLM +++ E V +
Sbjct: 131 RTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLMEIIKAENVSFTN 190
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GLEAIIFTA+GDMRQA+NNLQ+T +G V+ +NVFK+ D PHPL VK M +L
Sbjct: 191 DGLEAIIFTAEGDMRQAINNLQSTVAGHGLVSGDNVFKIVDSPHPLIVKKM---LLADTL 247
Query: 253 DDACSGLKQ-LYDLGYSPTDIITTLFRIIKN-YEMAEHLKLEFMKEAGFAHMRICDGVGS 310
+++ S LK L+D GYS DI+TT FR+ K+ Y++ E +LE +KE G HMRI +GVG+
Sbjct: 248 EESISHLKNDLWDKGYSAVDIVTTSFRVTKSLYQVKEAQRLEMIKEIGITHMRILEGVGT 307
Query: 311 YLQLCGLLAKLSIVR 325
YLQL LLA++ +R
Sbjct: 308 YLQLASLLARIHRLR 322
>gi|194866271|ref|XP_001971841.1| GG14218 [Drosophila erecta]
gi|190653624|gb|EDV50867.1| GG14218 [Drosophila erecta]
Length = 331
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 195/314 (62%), Positives = 243/314 (77%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PW+EKYRP K +IVGN D VARL + A GN PN+I+AGPPG GKTT+I LA LLG
Sbjct: 16 LPWIEKYRPAKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLG 75
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+Y+EAV+ELNAS++RGIDVVRNKIKMFAQ+KVTLP G+HK+V+LDEADSMT GAQQALR
Sbjct: 76 DSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALR 135
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTMEIYS++TRFALACN S KIIEPIQSRCA++RF++LSD ++L++L+ V + EK+ Y
Sbjct: 136 RTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTE 195
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GLEAI+FTA GDMRQ LNNLQ+T GF + ENVFKVCD+PHP ++ M+ +
Sbjct: 196 DGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAANDI 255
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
A L +L+ LGYSP DII +FR+ K + EHLKL+F++E G HM+I DG+ S L
Sbjct: 256 HKAYKILAKLWKLGYSPEDIIANIFRVCKRINIDEHLKLDFIREIGITHMKIIDGINSLL 315
Query: 313 QLCGLLAKLSIVRE 326
QL LLAKL I E
Sbjct: 316 QLTALLAKLCIAAE 329
>gi|193605856|ref|XP_001945771.1| PREDICTED: replication factor C subunit 2-like isoform 1
[Acyrthosiphon pisum]
gi|328696454|ref|XP_003240029.1| PREDICTED: replication factor C subunit 2-like isoform 2
[Acyrthosiphon pisum]
Length = 363
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 192/316 (60%), Positives = 248/316 (78%)
Query: 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH 68
S + PW+EKYRP DIVGN + V RL + GN+PN+I+AGPPG GKTT+ILALA
Sbjct: 42 SDLNTPWIEKYRPKSFTDIVGNEETVLRLEKFSSCGNVPNIIIAGPPGVGKTTTILALAR 101
Query: 69 ELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQ 128
LLG ++EAV+ELNAS DRGID VRNKIKMFAQ+KVTLPPG+HK+++LDEADSMT GAQ
Sbjct: 102 ILLGGAFKEAVLELNASSDRGIDTVRNKIKMFAQQKVTLPPGRHKIIILDEADSMTDGAQ 161
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKV 188
QALRRTME++SN+TRFALACN S KIIE IQSRCA++R+ +LSD+E++++++ V + E+V
Sbjct: 162 QALRRTMELWSNTTRFALACNNSDKIIEAIQSRCAMLRYGKLSDQEVMTQMLKVCKSEEV 221
Query: 189 PYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVL 248
+ +GLEA++FTA GDMRQALNNLQ+T++GFR V+ NVFKVCD+PHPL VK M+
Sbjct: 222 SFSADGLEAVVFTAQGDMRQALNNLQSTWNGFRHVDSTNVFKVCDEPHPLLVKEMLLECA 281
Query: 249 EGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGV 308
+ A + L+ LGY+P DIIT +FR+ K+ E+ E LKL+F++E G AH+RI +G+
Sbjct: 282 DQNISKAYKIMAHLWKLGYAPEDIITNIFRVAKHLEIKESLKLKFVQEIGMAHIRIVEGM 341
Query: 309 GSYLQLCGLLAKLSIV 324
S LQL GLLAKL V
Sbjct: 342 NSLLQLSGLLAKLCTV 357
>gi|194750805|ref|XP_001957720.1| GF23886 [Drosophila ananassae]
gi|190625002|gb|EDV40526.1| GF23886 [Drosophila ananassae]
Length = 331
Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust.
Identities = 195/315 (61%), Positives = 244/315 (77%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PW+EKYRP K +IVGN D VARL + A GN PN+I+AGPPG GKTT+I LA LLG
Sbjct: 16 LPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLG 75
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+Y+EAV+ELNAS++RGIDVVRNKIKMFAQ+KVTLP G+HK+V+LDEADSMT GAQQALR
Sbjct: 76 DSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALR 135
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTMEIYSN+TRFALACN S KIIEPIQSRCA++RF++LSD ++L++L+ V + EK+ Y
Sbjct: 136 RTMEIYSNTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDSQVLAKLLEVSKWEKLHYTD 195
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GLEAI+FTA GDMRQALNNLQ+T GF + ENVFKVCD+PHP ++ M+ +
Sbjct: 196 DGLEAIVFTAQGDMRQALNNLQSTAQGFGDITMENVFKVCDEPHPKLLEEMIHHCAANDI 255
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
A L +L+ LGYSP DII +FR+ K + E LKL+F++E G HM+I DG+ S L
Sbjct: 256 HKAYKILSKLWKLGYSPEDIIGNIFRVCKRVNIDEQLKLDFIREIGITHMKIVDGINSLL 315
Query: 313 QLCGLLAKLSIVRET 327
QL LLAKL + E+
Sbjct: 316 QLTALLAKLCMAAES 330
>gi|323303129|gb|EGA56931.1| Rfc4p [Saccharomyces cerevisiae FostersB]
Length = 323
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/318 (61%), Positives = 250/318 (78%), Gaps = 5/318 (1%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
S + + +PWVEKYRP + DIVGN + + RL IA+DGNMP++I++G PG GKTTS+
Sbjct: 2 SKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHC 61
Query: 66 LAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
LAHELLG +Y + V+ELNASDDRGIDVVRN+IK FAQKK+ LPPGKHK+V+LDEADSMTA
Sbjct: 62 LAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA 121
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
GAQQALRRTME+YSNSTRFA ACN S+KIIEP+QSRCAI+R+S+LSDE++L RL+ +++
Sbjct: 122 GAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKL 181
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E V Y +GLEAIIFTA+GDMRQA+NNLQ+T +G VN +NVFK+ D PHPL VK M
Sbjct: 182 EDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKM-- 239
Query: 246 NVLEGKFDDACSGLK-QLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMR 303
+L +D+ L+ L+ GYS DI+TT FR+ KN ++ E ++LE MKE G HMR
Sbjct: 240 -LLASNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMMKEIGLTHMR 298
Query: 304 ICDGVGSYLQLCGLLAKL 321
I +GVG+YLQL +LAK+
Sbjct: 299 ILEGVGTYLQLASMLAKI 316
>gi|324500315|gb|ADY40152.1| Replication factor C subunit 2 [Ascaris suum]
Length = 364
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 191/314 (60%), Positives = 247/314 (78%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
+ IPW+EKYRP K+ D+VGN A+ RLG+ A+ GN+PN++++GPPG GKTTSI ALA E
Sbjct: 43 SMSIPWLEKYRPQKLQDVVGNKLAIQRLGMFAKQGNLPNIVISGPPGCGKTTSIWALARE 102
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
LLG REA +ELNASDDRGIDVVRNKIK FAQ KV+LP G+HK+++LDEADSMT GAQQ
Sbjct: 103 LLGTQIREACLELNASDDRGIDVVRNKIKSFAQTKVSLPEGRHKIIILDEADSMTEGAQQ 162
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRRTMEIYS +TRFAL+CN S KIIEPIQSRCAI+RFS+L DEEI +RL+ V E+V
Sbjct: 163 ALRRTMEIYSKTTRFALSCNQSDKIIEPIQSRCAILRFSKLKDEEIATRLLQVCTYEQVV 222
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
Y G++A+IFTA GDMRQALNNLQ T +GF+ V +NVFKVCD+PHP +K M+ +
Sbjct: 223 YDESGIDALIFTAQGDMRQALNNLQCTVAGFKQVTADNVFKVCDEPHPEMIKKMLELCVR 282
Query: 250 GKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
K ++A ++ LY +GYSP DI++ +FR+ K+ + E+LK+E++KE G H+R+ +GV
Sbjct: 283 EKVNEATEIMQHLYKMGYSPEDILSNMFRVCKSANIPEYLKMEYIKEIGNCHVRVVEGVA 342
Query: 310 SYLQLCGLLAKLSI 323
S LQL GL+A+L +
Sbjct: 343 SLLQLSGLIARLCL 356
>gi|50290299|ref|XP_447581.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526891|emb|CAG60518.1| unnamed protein product [Candida glabrata]
Length = 322
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 198/319 (62%), Positives = 251/319 (78%), Gaps = 5/319 (1%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
S ++ ++PWVEKYRP + DIVGN + V RL IA DGNMP++I++G PG GKTTSI
Sbjct: 2 SKATLTLELPWVEKYRPHLLKDIVGNEETVERLQQIAADGNMPHMIISGLPGIGKTTSIH 61
Query: 65 ALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
LAHE+LG +Y +AV+ELNASDDRGIDVVRN+IK FAQKK LPPGKHK+++LDEADSMT
Sbjct: 62 CLAHEMLGESYSQAVLELNASDDRGIDVVRNQIKHFAQKKCHLPPGKHKIIILDEADSMT 121
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AGAQQALRRTME+YSNSTRFA ACN S+KIIEP+QSRCAI+R+S+LSDE++L RL+ +++
Sbjct: 122 AGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEIIK 181
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
E V Y +GLEAIIFTA+GDMRQA+NNLQ+T +G VN ENVFK+ D PHPL VK M
Sbjct: 182 AEDVQYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNGENVFKIVDSPHPLIVKKM- 240
Query: 245 RNVLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRIIKN-YEMAEHLKLEFMKEAGFAHM 302
+L D++ L+Q L+ GYS DI+TT FR+ KN +++ E ++LE +KE G HM
Sbjct: 241 --LLAETLDESIDCLRQELWAKGYSAVDIVTTCFRVTKNLFQLKESVRLEMIKEIGTTHM 298
Query: 303 RICDGVGSYLQLCGLLAKL 321
RI +GV +YLQL +LAK+
Sbjct: 299 RILEGVSTYLQLASMLAKI 317
>gi|386783685|gb|AFJ24737.1| replication factor C subunit 2, partial [Schmidtea mediterranea]
Length = 341
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 191/312 (61%), Positives = 246/312 (78%), Gaps = 1/312 (0%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
+++PW+EKYRP + DIVGN + RL I ++ GN+PNLI+AGPPG+GKTTSIL LA +
Sbjct: 20 FELPWLEKYRPLVLSDIVGNEGTIKRLEIFSKQGNLPNLIIAGPPGSGKTTSILCLARAM 79
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LG Y+ AV+ELNAS+DRGI+VVRNKIK FA+ KV LP G HK+++LDE DSMT GAQQA
Sbjct: 80 LGETYKNAVLELNASNDRGIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQA 139
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTME+YSN+TRFA ACN SSKIIEPIQSRCA++R+++LSD EIL+RL+ +++ E V Y
Sbjct: 140 LRRTMEMYSNTTRFAFACNDSSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIY 199
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+GLEAIIFTA GDMRQA+NN++ T+ GF V ENVFKVCD+PHPL +K+M+ N +E
Sbjct: 200 TDDGLEAIIFTAQGDMRQAINNVELTHKGFGSVTSENVFKVCDEPHPLLIKSMLENCVES 259
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHMRICDGVG 309
KF++A L L GYSP DII +FR+ KN++ + E LKL F+KE G HMRI DG+
Sbjct: 260 KFNEAFKSLNNLVAFGYSPEDIIGIIFRVTKNHDGIPEFLKLRFIKEIGEVHMRIVDGLT 319
Query: 310 SYLQLCGLLAKL 321
++LQL GL+ +L
Sbjct: 320 THLQLAGLIGRL 331
>gi|190407255|gb|EDV10522.1| replication factor C subunit 4 [Saccharomyces cerevisiae RM11-1a]
Length = 323
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/325 (60%), Positives = 253/325 (77%), Gaps = 5/325 (1%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
S + + +PWVEKYRP + DIVGN + + RL IA+DGNMP++I++G PG GKTTS+
Sbjct: 2 SKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHC 61
Query: 66 LAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
LAHELLG +Y + V+ELNASDDRGIDVVRN+IK FAQKK+ LPPGKHK+V+LDEADSMTA
Sbjct: 62 LAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA 121
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
GAQQALRRTME+YSNSTRFA ACN S+KIIEP+QSRCAI+R+S+LSDE++L RL+ +++
Sbjct: 122 GAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKL 181
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E V Y +GLEAIIFTA+GDMRQA+NNLQ+T +G VN +NVFK+ D PHPL VK M
Sbjct: 182 EDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKM-- 239
Query: 246 NVLEGKFDDACSGLK-QLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMR 303
+L +D+ L+ L+ GYS DI+TT FR+ KN ++ E ++LE +KE G HMR
Sbjct: 240 -LLASNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMR 298
Query: 304 ICDGVGSYLQLCGLLAKLSIVRETA 328
I +GVG+YLQL +LAK+ + + A
Sbjct: 299 ILEGVGTYLQLASMLAKIHKLNKKA 323
>gi|291237115|ref|XP_002738484.1| PREDICTED: replication factor C (activator 1) 2-like [Saccoglossus
kowalevskii]
Length = 320
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 190/306 (62%), Positives = 246/306 (80%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY 75
VEKYRP + ++VGN D V+RL + A++GN+PN+I+AGPPG GKTTSIL LA LLG +
Sbjct: 8 VEKYRPQVLSEVVGNEDTVSRLAVFAKEGNVPNIIIAGPPGIGKTTSILCLARCLLGTAF 67
Query: 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTM 135
++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT GAQQALRRTM
Sbjct: 68 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 127
Query: 136 EIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGL 195
EIYS +TRFALACN S KIIEPIQSRCA++R+S+LSD ++L RL+ + + E V Y GL
Sbjct: 128 EIYSKTTRFALACNTSDKIIEPIQSRCAVLRYSKLSDAQVLKRLLEISERENVTYNDSGL 187
Query: 196 EAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDA 255
EAIIFT+ GDMRQALNNLQ+T+ GF V ENVFKVCD+PHPL +KNM+ ++ D+A
Sbjct: 188 EAIIFTSQGDMRQALNNLQSTWQGFGDVTGENVFKVCDEPHPLVIKNMLEYCVDSNIDEA 247
Query: 256 CSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLC 315
++ L+ +GYS DII +FR+ K ++ E+LKLE++KE G+ H+RI +GV + LQ+
Sbjct: 248 YRLMRHLWMMGYSAEDIINNMFRVCKTAQIQEYLKLEYIKEIGYTHLRIAEGVQTLLQMA 307
Query: 316 GLLAKL 321
GLLA+L
Sbjct: 308 GLLARL 313
>gi|19114033|ref|NP_593121.1| DNA replication factor C complex subunit Rfc4 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|30913230|sp|O94449.1|RFC4_SCHPO RecName: Full=Replication factor C subunit 4; Short=Replication
factor C4
gi|4106657|emb|CAA22597.1| DNA replication factor C complex subunit Rfc4 (predicted)
[Schizosaccharomyces pombe]
Length = 342
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 192/318 (60%), Positives = 252/318 (79%), Gaps = 1/318 (0%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
++S AY++PWVEKYRP + DIVGN + + RL +IA++GNMP+L+++G PG GKTTSIL
Sbjct: 14 NNSVAYELPWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILC 73
Query: 66 LAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
LAH LLGP Y+E V+ELNASD+RGIDVVRN+IK FAQKKV LPPG+HK+++LDEADSMTA
Sbjct: 74 LAHALLGPAYKEGVLELNASDERGIDVVRNRIKAFAQKKVILPPGRHKIIILDEADSMTA 133
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
GAQQALRRTMEIYSN+TRFALACN S+KIIEPIQSRCAI+R+SRL+D+++L RL+ + +
Sbjct: 134 GAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKA 193
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
EKV Y +GL A+I TA+GDMRQA+NNLQ+T +GF VN ENVF+V DQP P+ + M+
Sbjct: 194 EKVNYTDDGLAALIMTAEGDMRQAVNNLQSTVAGFGLVNGENVFRVADQPSPVAIHAMLT 253
Query: 246 NVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHMRI 304
G D A L+ ++DLG+S DI+T +FR++K + + E +LE +KE G HM I
Sbjct: 254 ACQSGNIDVALEKLQGIWDLGFSAVDIVTNMFRVVKTMDSIPEFSRLEMLKEIGQTHMII 313
Query: 305 CDGVGSYLQLCGLLAKLS 322
+GV + LQL GL+ +L+
Sbjct: 314 LEGVQTLLQLSGLVCRLA 331
>gi|6324478|ref|NP_014547.1| replication factor C subunit 4 [Saccharomyces cerevisiae S288c]
gi|730503|sp|P40339.1|RFC4_YEAST RecName: Full=Replication factor C subunit 4; Short=Replication
factor C4; AltName: Full=Activator 1 37 kDa subunit
gi|499704|gb|AAA34970.1| 37 kDa subunit [Saccharomyces cerevisiae]
gi|600464|emb|CAA58185.1| orf 00923 [Saccharomyces cerevisiae]
gi|841468|gb|AAC49063.1| Rfc4p [Saccharomyces cerevisiae]
gi|1419942|emb|CAA99106.1| RFC4 [Saccharomyces cerevisiae]
gi|151945540|gb|EDN63781.1| replication factor C subunit 4 [Saccharomyces cerevisiae YJM789]
gi|207341418|gb|EDZ69479.1| YOL094Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256271406|gb|EEU06467.1| Rfc4p [Saccharomyces cerevisiae JAY291]
gi|259149392|emb|CAY86196.1| Rfc4p [Saccharomyces cerevisiae EC1118]
gi|285814797|tpg|DAA10690.1| TPA: replication factor C subunit 4 [Saccharomyces cerevisiae
S288c]
gi|323335629|gb|EGA76912.1| Rfc4p [Saccharomyces cerevisiae Vin13]
gi|323346696|gb|EGA80980.1| Rfc4p [Saccharomyces cerevisiae Lalvin QA23]
gi|349581076|dbj|GAA26234.1| K7_Rfc4p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763163|gb|EHN04693.1| Rfc4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296734|gb|EIW07836.1| Rfc4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 323
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/318 (61%), Positives = 250/318 (78%), Gaps = 5/318 (1%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
S + + +PWVEKYRP + DIVGN + + RL IA+DGNMP++I++G PG GKTTS+
Sbjct: 2 SKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHC 61
Query: 66 LAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
LAHELLG +Y + V+ELNASDDRGIDVVRN+IK FAQKK+ LPPGKHK+V+LDEADSMTA
Sbjct: 62 LAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA 121
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
GAQQALRRTME+YSNSTRFA ACN S+KIIEP+QSRCAI+R+S+LSDE++L RL+ +++
Sbjct: 122 GAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKL 181
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E V Y +GLEAIIFTA+GDMRQA+NNLQ+T +G VN +NVFK+ D PHPL VK M
Sbjct: 182 EDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKM-- 239
Query: 246 NVLEGKFDDACSGLK-QLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMR 303
+L +D+ L+ L+ GYS DI+TT FR+ KN ++ E ++LE +KE G HMR
Sbjct: 240 -LLASNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMR 298
Query: 304 ICDGVGSYLQLCGLLAKL 321
I +GVG+YLQL +LAK+
Sbjct: 299 ILEGVGTYLQLASMLAKI 316
>gi|424513766|emb|CCO66388.1| replication factor C subunit 2 [Bathycoccus prasinos]
Length = 373
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 194/320 (60%), Positives = 255/320 (79%), Gaps = 3/320 (0%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PW+EK+RPTK+ DIVG+ + + ++ + G+MPNL+L+GPPG GKTTS+ LA LLG
Sbjct: 25 PWIEKWRPTKLDDIVGHEETLNQMRGMIETGSMPNLLLSGPPGCGKTTSVHVLARTLLGD 84
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
Y++AV+ELNASD+RGIDVVRNKIKMFAQKKVTLP G+ K+++LDEAD+MT GAQQA+RR
Sbjct: 85 RYKDAVLELNASDERGIDVVRNKIKMFAQKKVTLPAGRCKIIILDEADAMTKGAQQAMRR 144
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
TMEIYS +TRFALACN+S KIIEPIQSRCAIVRFSRLSD+++L RL+ V ++EKVP+
Sbjct: 145 TMEIYSATTRFALACNLSDKIIEPIQSRCAIVRFSRLSDKQVLERLVYVCEQEKVPHDAR 204
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
GLEAI+F A+GDMR ALN+LQA +SGF+ VNQENVF+VCD PHP + ++++ L G+ D
Sbjct: 205 GLEAIVFCAEGDMRNALNSLQACHSGFQMVNQENVFRVCDTPHPEVIGAILQHCLNGELD 264
Query: 254 DACSGLKQLYDLGYSPTDIITTLFRIIKNY---EMAEHLKLEFMKEAGFAHMRICDGVGS 310
DAC L +L GYSP D+I T+F++ K + EM+E++KLEF+K GF H+RI +G S
Sbjct: 265 DACDRLLKLRKSGYSPQDLIKTIFQVCKRFDDKEMSEYVKLEFLKIIGFFHVRISEGCAS 324
Query: 311 YLQLCGLLAKLSIVRETAKA 330
+QLCG++A+L AK+
Sbjct: 325 DVQLCGMVARLCGCSLEAKS 344
>gi|169598013|ref|XP_001792430.1| hypothetical protein SNOG_01804 [Phaeosphaeria nodorum SN15]
gi|160707641|gb|EAT91453.2| hypothetical protein SNOG_01804 [Phaeosphaeria nodorum SN15]
Length = 376
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 195/337 (57%), Positives = 260/337 (77%), Gaps = 19/337 (5%)
Query: 4 SSSSSSAYDIPW------------------VEKYRPTKVCDIVGNLDAVARLGIIARDGN 45
+++ + Y++PW VEKYRP + D+VGN + + RL IIA+DGN
Sbjct: 23 NAAGGANYELPWYSPLLSLSQSIPTNKGGRVEKYRPVYLDDVVGNTETIERLKIIAKDGN 82
Query: 46 MPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKV 105
MP++I++G PG GKTTSIL LA +LLG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKV
Sbjct: 83 MPHMIISGMPGIGKTTSILCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKV 142
Query: 106 TLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIV 165
TLPPG+ K+V+LDEADSMT+GAQQALRRTMEIYS +TRFA ACN S+KIIEP+QSRCAI+
Sbjct: 143 TLPPGRQKLVILDEADSMTSGAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAIL 202
Query: 166 RFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQ 225
R++RL+D +++ R+M V++ E V Y +GL A++F+A+GDMRQA+NNLQ+T +GF FVN
Sbjct: 203 RYARLTDAQVVRRIMQVIEAEDVKYSDDGLAALVFSAEGDMRQAINNLQSTNAGFGFVNG 262
Query: 226 ENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE- 284
+NVFKV D PHP+ V+ M++ E + +DA LK+L+DLGYS DII+T+FR+ K +
Sbjct: 263 DNVFKVVDSPHPIKVQVMIKACHETRINDAMVSLKELWDLGYSCHDIISTMFRVTKTIDT 322
Query: 285 MAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKL 321
++EH KLEF+KE GF HMRI +GV + LQL G +A+L
Sbjct: 323 LSEHAKLEFIKEIGFTHMRILEGVQTLLQLSGCIARL 359
>gi|443920619|gb|ELU40509.1| replication factor C subunit 4 [Rhizoctonia solani AG-1 IA]
Length = 411
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 189/320 (59%), Positives = 256/320 (80%), Gaps = 3/320 (0%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
+ ++ Y++PWVEKYRP + DIVGN++ + RL +IA+DGN P++I++G PG GKTTS
Sbjct: 8 AKQATEIGYELPWVEKYRPQTLNDIVGNVETIDRLKVIAQDGNCPHIIISGMPGIGKTTS 67
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
I LAH +LG Y+E V+ELNASD+RGIDVVR KIK FAQKKVTLPPG+HK+V+LDEAD
Sbjct: 68 IHCLAHAMLGDAYKEGVLELNASDERGIDVVRGKIKAFAQKKVTLPPGRHKIVILDEADR 127
Query: 123 --MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
MT GAQQA+RRTMEI+S++TRFALACN ++KIIEPIQSRCA++R+++L DEE+L R++
Sbjct: 128 WVMTTGAQQAMRRTMEIFSSTTRFALACNQANKIIEPIQSRCAVLRYAKLRDEEVLKRVL 187
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
V + EKV Y EGL A++FTA+GD+RQALNNLQ+T++GF FV+ +NVF+VCDQPHP+ V
Sbjct: 188 EVCEMEKVKYNDEGLTALLFTAEGDLRQALNNLQSTHAGFGFVSADNVFRVCDQPHPVIV 247
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGF 299
+ ++R G D A S L +L+ GYS DI+TTLFR+ K + ++ E++KLEF+KE G+
Sbjct: 248 QEIIRACQNGDIDSAMSKLNELWHNGYSAVDIVTTLFRVTKTFDDLPEYMKLEFIKEIGW 307
Query: 300 AHMRICDGVGSYLQLCGLLA 319
HMR+ +GVG+ +QL GL+
Sbjct: 308 THMRVLEGVGTLVQLGGLMG 327
>gi|308810180|ref|XP_003082399.1| Replication factor C 2 (ISS) [Ostreococcus tauri]
gi|116060867|emb|CAL57345.1| Replication factor C 2 (ISS) [Ostreococcus tauri]
Length = 354
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 195/334 (58%), Positives = 256/334 (76%), Gaps = 4/334 (1%)
Query: 2 ASSSSSSSAYD-IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
A + + ++ D +PW+EKYRP + DIVGN DAV R+ + G MPNL+ GPPG GKT
Sbjct: 9 AGAKAQTAPIDTLPWLEKYRPKTLDDIVGNDDAVDRMRSMVASGFMPNLMFCGPPGCGKT 68
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
++I L+ LLG Y++AV+E+NASD+RGIDVVRNKIKMFAQKKVTLPPG+ K+V+LDEA
Sbjct: 69 SAIGVLSRALLGDKYKDAVLEMNASDERGIDVVRNKIKMFAQKKVTLPPGRTKIVILDEA 128
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D+MT AQQALRRTMEI+S +TRF LACN S K+IEPIQSRCAIVRF +L+DE++L RLM
Sbjct: 129 DAMTTAAQQALRRTMEIFSATTRFCLACNTSDKVIEPIQSRCAIVRFVKLTDEQVLKRLM 188
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
V++ EKV YVP+GLEAI+FTADGDMRQALNNLQ+T GF +++ENVF+VCDQPHP V
Sbjct: 189 TVIEREKVAYVPKGLEAIVFTADGDMRQALNNLQSTAQGFGLIDEENVFRVCDQPHPNIV 248
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE---MAEHLKLEFMKEA 297
++ + +L+ DDA + +K LYD GYS DII T++R+ KNY+ M E++KLE ++
Sbjct: 249 RDALSFILQENIDDAYARIKSLYDKGYSVFDIIGTMYRVCKNYDDNAMPEYIKLELIRII 308
Query: 298 GFAHMRICDGVGSYLQLCGLLAKLSIVRETAKAV 331
GF H+R+ +G + LQL G +AK+ + AK +
Sbjct: 309 GFTHLRLSEGCATMLQLAGGMAKMCELVRDAKRI 342
>gi|50555415|ref|XP_505116.1| YALI0F07337p [Yarrowia lipolytica]
gi|49650986|emb|CAG77923.1| YALI0F07337p [Yarrowia lipolytica CLIB122]
Length = 333
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 191/312 (61%), Positives = 250/312 (80%), Gaps = 1/312 (0%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
+++PWVEKYRP + D+VG+ + V RL I+A+DGN+PNL+++G PG GKTTS+ LA L
Sbjct: 16 FELPWVEKYRPMYLDDVVGHTETVERLKIMAKDGNIPNLLISGLPGIGKTTSVHCLARTL 75
Query: 71 LGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
LGP Y++AV+ELNASDDRGI+VVR KIK FAQKKVT+PPGKHK+++LDEADSMTAGAQ
Sbjct: 76 LGPQLYKDAVLELNASDDRGIEVVRGKIKNFAQKKVTMPPGKHKIIILDEADSMTAGAQN 135
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
AL+RTME+YS++TRFA ACN S+KIIE IQSRCAI+RF RLS+E++L RL+ +V+ E V
Sbjct: 136 ALKRTMELYSDTTRFAFACNQSNKIIEAIQSRCAILRFGRLSNEQVLERLLHIVEAENVQ 195
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
+GL A+IF+A+GDMRQA+NNLQ T SGF FVN NV+KV D PHP+ VK+M+ +
Sbjct: 196 CSDDGLSALIFSAEGDMRQAINNLQGTVSGFGFVNSSNVWKVVDSPHPVVVKSMLDACSK 255
Query: 250 GKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
G+ +AC LKQL+ GYS DII+T+FR+ K E+ E L+LE++KE GF HMRI +G+
Sbjct: 256 GEVTEACESLKQLWTKGYSAQDIISTMFRVTKTLEVPEALRLEYIKEIGFTHMRILEGIT 315
Query: 310 SYLQLCGLLAKL 321
+YLQL G +A+L
Sbjct: 316 TYLQLAGCVARL 327
>gi|164426330|ref|XP_001728317.1| activator 1 37 kDa subunit [Neurospora crassa OR74A]
gi|157071292|gb|EDO65226.1| activator 1 37 kDa subunit [Neurospora crassa OR74A]
Length = 353
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 188/312 (60%), Positives = 253/312 (81%), Gaps = 5/312 (1%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
Y++PWVEKYRP + D+VGN + + RL IIA++GNMP+ I++G PG GKTTS+L LA +L
Sbjct: 31 YELPWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHFIISGMPGIGKTTSVLCLARQL 90
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LG Y+EAV+ELNASD+R VR +IK FAQKKVTLPPG+HK+V+LDEADSMT+GAQQA
Sbjct: 91 LGDAYKEAVLELNASDER----VRQRIKGFAQKKVTLPPGRHKIVILDEADSMTSGAQQA 146
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+RF++L+D +++ RL+ +++ EKV Y
Sbjct: 147 LRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRFAKLTDAQVVKRLLQIIEAEKVEY 206
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+GL A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVFKV D PHP+ V+ M++ EG
Sbjct: 207 SDDGLAALVFSAEGDMRQAINNLQSTHAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEG 266
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVG 309
D A GL++L+DLGYS DII+T+F++ K ++EH KLEF+KE GF HM+I +GV
Sbjct: 267 NVDAALDGLRELWDLGYSSHDIISTMFKVTKTIPTLSEHAKLEFIKEIGFTHMKILEGVQ 326
Query: 310 SYLQLCGLLAKL 321
+ LQL G +A+L
Sbjct: 327 TLLQLSGCVARL 338
>gi|342875984|gb|EGU77649.1| hypothetical protein FOXB_11824 [Fusarium oxysporum Fo5176]
Length = 697
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 187/318 (58%), Positives = 258/318 (81%), Gaps = 1/318 (0%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+ +SS+ ++ Y++PWVEKYRP + D+VGN + + RL IIAR+GNMP++I++G PG GKT
Sbjct: 21 LKASSNGTTNYELPWVEKYRPVFLDDVVGNTETIERLKIIAREGNMPHVIISGMPGIGKT 80
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TS+L LA +LLG +Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLP G+HK+V+LDEA
Sbjct: 81 TSVLCLARQLLGESYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRHKLVILDEA 140
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT+GAQQALRRTMEIYSN+TRFA ACN S+KIIEP+QSRCAI+R+++L+D +++ RLM
Sbjct: 141 DSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDAQVVKRLM 200
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+++ EKV Y +GL A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVFKV D PHP+ V
Sbjct: 201 QIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTFAGFGFVSGDNVFKVVDSPHPIKV 260
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGF 299
+ M++ EG D A L++L+DLGYS DII+T+F++ K ++EH KLEF+KE GF
Sbjct: 261 QAMLKACYEGNVDSALETLRELWDLGYSSHDIISTMFKVTKTIPTLSEHAKLEFIKEIGF 320
Query: 300 AHMRICDGVGSYLQLCGL 317
HM++ + + + C L
Sbjct: 321 THMKVLEALSPINRRCIL 338
>gi|354545639|emb|CCE42366.1| hypothetical protein CPAR2_200090 [Candida parapsilosis]
Length = 320
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 193/316 (61%), Positives = 249/316 (78%), Gaps = 2/316 (0%)
Query: 8 SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
S ++PWVEKYRP + DIVGN + + RL II +DGNMPN+I++G PG GKTTS+ LA
Sbjct: 2 SKTLELPWVEKYRPHVLDDIVGNEETIERLKIIVQDGNMPNMIISGLPGIGKTTSVHCLA 61
Query: 68 HELLGP-NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG 126
+ELLG +Y +A +ELNASDDRGIDVVRNKIK FAQ K++LPPG+ K+++LDEADSMT G
Sbjct: 62 YELLGKEHYHQATLELNASDDRGIDVVRNKIKQFAQTKISLPPGRTKIIILDEADSMTPG 121
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQQALRRTMEIYSN+TRFA ACN SSKIIEP+QSRCAI+R+++LSDEE+L RL+ +++ E
Sbjct: 122 AQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLSDEEVLKRLLDIIKSE 181
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
V Y EGL+A+IF+A+GDMRQA+NNLQ+T +GF FVN NVFK+ DQPHPL ++N++ N
Sbjct: 182 NVQYNNEGLQALIFSAEGDMRQAINNLQSTVAGFGFVNDVNVFKIVDQPHPLVIQNILSN 241
Query: 247 VLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRIC 305
L+G D A L L+ GYS DI+T+ F++ K + E +L +KE GF HMR+
Sbjct: 242 CLQGDVDKALGLLDGLWHKGYSAIDIVTSTFKVAKTIPNVDESKRLNMIKEIGFVHMRVL 301
Query: 306 DGVGSYLQLCGLLAKL 321
+GVGSYLQLCG+ AK+
Sbjct: 302 EGVGSYLQLCGMYAKI 317
>gi|444320537|ref|XP_004180925.1| hypothetical protein TBLA_0E03520 [Tetrapisispora blattae CBS 6284]
gi|387513968|emb|CCH61406.1| hypothetical protein TBLA_0E03520 [Tetrapisispora blattae CBS 6284]
Length = 324
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/321 (61%), Positives = 257/321 (80%), Gaps = 5/321 (1%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
S S + + ++PWVEKYRP + DIVGN + + RL IA DGNMP++I++G PG GKTTS
Sbjct: 2 SLSINKISLELPWVEKYRPKVLKDIVGNNETIDRLQQIALDGNMPHMIISGMPGIGKTTS 61
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
I LAHELLG +Y++AV+ELNASDDRGI+VVRN+IK FAQKK LPPGK+K+++LDEADS
Sbjct: 62 IHCLAHELLGDSYKQAVLELNASDDRGIEVVRNQIKHFAQKKCHLPPGKNKIIILDEADS 121
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT+GAQQALRRTME+YSN+TRFA ACN S+KIIEP+QSRCAI+R+++LSDEE+L RL+ +
Sbjct: 122 MTSGAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYNKLSDEEVLKRLLQI 181
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
++ E V Y +GLEAIIFTA+GDMRQA+NNLQ+T +G VN +NVFK+ D PHPL VK
Sbjct: 182 IELENVQYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHTLVNGDNVFKIVDSPHPLIVKK 241
Query: 243 MVRNVLEGKFDDACSGLK-QLYDLGYSPTDIITTLFRIIKN-YEMAEHLKLEFMKEAGFA 300
M +L + D++ L+ +L+D GYS DI+TT FR++K Y++ E L+LE +KE GF
Sbjct: 242 M---LLSKELDESIDILRNELWDKGYSSIDIVTTCFRVMKILYQIKESLRLEIIKEIGFT 298
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI +GVG+YLQL +LAK+
Sbjct: 299 HMRILEGVGTYLQLACMLAKI 319
>gi|50513622|pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 323
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/318 (61%), Positives = 250/318 (78%), Gaps = 5/318 (1%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
S + + +PWVEKYRP + DIVGN + + RL IA+DGNMP++I++G PG GKTTS+
Sbjct: 2 SKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHC 61
Query: 66 LAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
LAHELLG +Y + V+ELNASDDRGIDVVRN+IK FAQKK+ LPPGKHK+V+LDEADSMTA
Sbjct: 62 LAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA 121
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
GAQQALRRTME+YSNSTRFA ACN S+KIIEP+QS+CAI+R+S+LSDE++L RL+ +++
Sbjct: 122 GAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKL 181
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E V Y +GLEAIIFTA+GDMRQA+NNLQ+T +G VN +NVFK+ D PHPL VK M
Sbjct: 182 EDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKM-- 239
Query: 246 NVLEGKFDDACSGLK-QLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMR 303
+L +D+ L+ L+ GYS DI+TT FR+ KN ++ E ++LE +KE G HMR
Sbjct: 240 -LLASNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMR 298
Query: 304 ICDGVGSYLQLCGLLAKL 321
I +GVG+YLQL +LAK+
Sbjct: 299 ILEGVGTYLQLASMLAKI 316
>gi|328866222|gb|EGG14607.1| replication factor C subunit [Dictyostelium fasciculatum]
Length = 325
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/310 (63%), Positives = 248/310 (80%), Gaps = 1/310 (0%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP+++ DIVGN + V+RL IA DGN+PN+I++GPPGTGKTTSIL LA LLG
Sbjct: 6 LPWVEKYRPSQIKDIVGNEETVSRLQSIAIDGNLPNIIISGPPGTGKTTSILCLAQALLG 65
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
P Y+EAV ELNASD+R ++VVR+KIK FA KKVTLPPG+HK+++LDEADSMTAGAQQALR
Sbjct: 66 PAYKEAVYELNASDERKLEVVRDKIKKFAAKKVTLPPGRHKIIILDEADSMTAGAQQALR 125
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R MEI S +TRFALACN S+KIIEPIQSRCA++R++RLSDE+IL RL V+ E VPY
Sbjct: 126 RIMEINSATTRFALACNQSTKIIEPIQSRCAVLRYTRLSDEQILKRLKEVMTIENVPYHE 185
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
GLEA++ TADGDMRQALNNLQAT+SGF VN +NVFKVC+QPHP V M+ E K+
Sbjct: 186 NGLEALLHTADGDMRQALNNLQATHSGFGLVNNDNVFKVCEQPHPAIVTMMLSACAECKY 245
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKN-YEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
+A + + L+ GY+ TDI+TT+FR+ K Y + E+ +LEF+KE G ++MR G+ +
Sbjct: 246 KEAYAQMDVLWSKGYASTDILTTMFRVCKTIYAIPEYQRLEFIKEIGISNMRASAGMNTL 305
Query: 312 LQLCGLLAKL 321
+QL GLLA+L
Sbjct: 306 VQLTGLLARL 315
>gi|401881925|gb|EJT46203.1| subunit of heteropentameric Replication factor C (RF-C), Rfc3p
[Trichosporon asahii var. asahii CBS 2479]
gi|406701041|gb|EKD04197.1| subunit of heteropentameric Replication factor C (RF-C), Rfc3p
[Trichosporon asahii var. asahii CBS 8904]
Length = 335
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/317 (59%), Positives = 250/317 (78%), Gaps = 8/317 (2%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
+ + Y++PWVEKYRP + DIVGN + V RL +IA DGNMP++I++ TTSI
Sbjct: 14 ADAEGYEMPWVEKYRPQYLSDIVGNTETVERLKVIAEDGNMPHIIIS-------TTSIHC 66
Query: 66 LAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
LAH LLG YRE V+ELNASD+RGIDVVRNKIK FAQ+KVTLPPG+HK+++LDEADSMTA
Sbjct: 67 LAHALLGDAYREGVLELNASDERGIDVVRNKIKSFAQRKVTLPPGRHKMIILDEADSMTA 126
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
GAQQALRRTMEIYSN+TRFALACN+S+KIIEPIQSRCAI+R+S+L D E+L RL + +
Sbjct: 127 GAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRYSKLRDAEVLKRLKEICEA 186
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E+V Y EGL A+IFTA+GDMRQA+NNLQ+T+SGF FV+ +NVFK+CDQPHP+ ++NM+
Sbjct: 187 ERVKYNDEGLAALIFTAEGDMRQAINNLQSTWSGFGFVSNDNVFKICDQPHPIILRNMIL 246
Query: 246 NVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRI 304
+G D A + L+D GYS DI+ ++FR++K ++ E+ KLEF++E G+ HMR+
Sbjct: 247 ECSKGNVDTALETIHSLWDKGYSAVDIVVSIFRVVKGMDDLPEYTKLEFIREIGWTHMRV 306
Query: 305 CDGVGSYLQLCGLLAKL 321
+GVG+ QL ++A+L
Sbjct: 307 LEGVGTLTQLGAMIARL 323
>gi|410077369|ref|XP_003956266.1| hypothetical protein KAFR_0C01380 [Kazachstania africana CBS 2517]
gi|372462850|emb|CCF57131.1| hypothetical protein KAFR_0C01380 [Kazachstania africana CBS 2517]
Length = 321
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/319 (61%), Positives = 253/319 (79%), Gaps = 5/319 (1%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
S S ++PWVEKYRP + DIVGN + + RL IA+DGNMP++I++G PG GKTTS+
Sbjct: 2 SRPSLTLELPWVEKYRPQLLKDIVGNEETIERLKQIAQDGNMPHMIISGLPGIGKTTSVH 61
Query: 65 ALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
LAHELLG +Y +AV+ELNASDDRGIDV+RN+IK FAQKK+ LP GKHK+++LDEADSMT
Sbjct: 62 CLAHELLGSHYSQAVLELNASDDRGIDVIRNQIKHFAQKKLNLPVGKHKIIILDEADSMT 121
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AGAQQALRRTME+YSN+TRFA ACN S+KIIEP+QSRCAI+R+S+LSDE++L RL+ V++
Sbjct: 122 AGAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEVIE 181
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EKV Y +GLEAIIFTA+GDMRQA+NNLQ+T +G VN +NVFK+ D PHPL V+ M
Sbjct: 182 LEKVEYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNGDNVFKIVDSPHPLIVRKM- 240
Query: 245 RNVLEGKFDDACSGLK-QLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHM 302
+L D++ + L+ +L++ GYS DI+TT FR+ K ++ E +LE +KE GF HM
Sbjct: 241 --LLSTTLDESMNILRNELWNKGYSSVDIVTTCFRVTKTLPQVKEAKRLEMIKEIGFTHM 298
Query: 303 RICDGVGSYLQLCGLLAKL 321
RI +GVG+YLQL +LAK+
Sbjct: 299 RILEGVGTYLQLASMLAKI 317
>gi|323307063|gb|EGA60346.1| Rfc4p [Saccharomyces cerevisiae FostersO]
Length = 382
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/318 (61%), Positives = 249/318 (78%), Gaps = 5/318 (1%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
S + + +PWVEKYRP + DIVGN + + RL IA+DGNMP++I++G PG GKTTS+
Sbjct: 61 SKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHC 120
Query: 66 LAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
LAHELLG +Y + V+ELNASDDRGI VVRN+IK FAQKK+ LPPGKHK+V+LDEADSMTA
Sbjct: 121 LAHELLGRSYADGVLELNASDDRGIXVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA 180
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
GAQQALRRTME+YSNSTRFA ACN S+KIIEP+QSRCAI+R+S+LSDE++L RL+ +++
Sbjct: 181 GAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKL 240
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E V Y +GLEAIIFTA+GDMRQA+NNLQ+T +G VN +NVFK+ D PHPL VK M
Sbjct: 241 EDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKM-- 298
Query: 246 NVLEGKFDDACSGLK-QLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMR 303
+L +D+ L+ L+ GYS DI+TT FR+ KN ++ E ++LE MKE G HMR
Sbjct: 299 -LLASNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMMKEIGLTHMR 357
Query: 304 ICDGVGSYLQLCGLLAKL 321
I +GVG+YLQL +LAK+
Sbjct: 358 ILEGVGTYLQLASMLAKI 375
>gi|401623752|gb|EJS41840.1| rfc4p [Saccharomyces arboricola H-6]
Length = 323
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/311 (62%), Positives = 246/311 (79%), Gaps = 5/311 (1%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + DIVGN + + RL IA+DGNMP++I++G PG GKTTS+ LAHELLG
Sbjct: 9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG 68
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+Y + V+ELNASDDRGIDVVRN+IK FAQKK+ LP GKHK+++LDEADSMTAGAQQALR
Sbjct: 69 SSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPQGKHKIIILDEADSMTAGAQQALR 128
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME+YSNSTRFA ACN S+KIIEP+QSRCAI+R+S+LSDE++L RL+ +++ E V Y
Sbjct: 129 RTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLEIIKLEDVKYTN 188
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GLEAIIFTA+GDMRQA+NNLQ+T +G VN +NVFK+ D PHPL VK M +L
Sbjct: 189 DGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKM---LLATNL 245
Query: 253 DDACSGLK-QLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVGS 310
DD+ L+ L+ GYS DI+TT FR+ KN ++ E ++LE +KE G HMRI +GVG+
Sbjct: 246 DDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLTQVKESVRLEMIKEIGLTHMRILEGVGT 305
Query: 311 YLQLCGLLAKL 321
YLQL +LAK+
Sbjct: 306 YLQLASMLAKI 316
>gi|323508283|emb|CBQ68154.1| probable RFC4-DNA replication factor C, 37 kDa subunit [Sporisorium
reilianum SRZ2]
Length = 341
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 186/321 (57%), Positives = 252/321 (78%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A+ ++ ++ Y++PWVEKYRP ++ D+VGN D + RL +I DGN P+L+++G PG GKTT
Sbjct: 9 AAPAAVTTGYELPWVEKYRPMRLNDVVGNKDTIDRLKVIQNDGNCPHLLISGLPGIGKTT 68
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
S+L LA LLG Y+E V+ELNASD+RG+DVVRNKIK FAQKKV+LPPG+HK+++LDEAD
Sbjct: 69 SVLCLARALLGDAYKEGVLELNASDERGVDVVRNKIKTFAQKKVSLPPGRHKIIILDEAD 128
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT AQQALRRTMEIYSN+TRF ACN S+KIIEPIQSRCAI+R+ ++ DE+IL RL+
Sbjct: 129 SMTPAAQQALRRTMEIYSNTTRFCFACNQSNKIIEPIQSRCAILRYGKVRDEQILKRLLE 188
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ + E V Y EGL AIIFT +GDMRQA+NNLQ+T++G FV+ +NVFKVCDQPHP ++
Sbjct: 189 ICEMEAVEYSDEGLAAIIFTTEGDMRQAINNLQSTWTGLGFVSPDNVFKVCDQPHPFLIR 248
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFA 300
++ + +G DDA L +++ GY+ DI+TTLFR++K + + E KL+F+KE G+
Sbjct: 249 ALLLSCKKGDIDDAMEKLDEIWSKGYAAVDIVTTLFRVVKTLDGIPEATKLKFIKEIGWT 308
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI +GV + +QL GL+A+L
Sbjct: 309 HMRILEGVATVVQLGGLIARL 329
>gi|448524726|ref|XP_003869003.1| Rfc4 heteropentameric replication factor C subunit [Candida
orthopsilosis Co 90-125]
gi|380353356|emb|CCG22866.1| Rfc4 heteropentameric replication factor C subunit [Candida
orthopsilosis]
Length = 320
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 192/316 (60%), Positives = 249/316 (78%), Gaps = 2/316 (0%)
Query: 8 SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
S ++PWVEKYRP + DIVGN + + RL +I +DGNMPN+I++G PG GKTTSI LA
Sbjct: 2 SKTLELPWVEKYRPHVLDDIVGNEETIERLKVIVQDGNMPNMIISGLPGIGKTTSIHCLA 61
Query: 68 HELLGP-NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG 126
+ELLG +Y +A +ELNASDDRGIDVVRNKIK FAQ K++LPPG+ K+++LDEADSMT G
Sbjct: 62 YELLGKEHYHQATLELNASDDRGIDVVRNKIKQFAQTKISLPPGRTKIIILDEADSMTPG 121
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQQALRRTMEIYSN+TRFA ACN SSKIIEP+QSRCAI+R+++LSDEE+L RL+ +++ E
Sbjct: 122 AQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLSDEEVLKRLLDIIKLE 181
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
V Y EGL+A+IF+A+GDMRQA+NN+Q+T +GF FVN NVFK+ DQPHPL ++N++ N
Sbjct: 182 NVQYNNEGLQALIFSAEGDMRQAINNMQSTVAGFGFVNDVNVFKIVDQPHPLVIQNILSN 241
Query: 247 VLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRIC 305
L+G D A L L+ GYS DI+T+ F++ K + E +L +KE GF HMR+
Sbjct: 242 CLQGDVDKAIGLLDGLWHKGYSAIDIVTSTFKVAKTIPNVDESKRLNMIKEIGFVHMRVL 301
Query: 306 DGVGSYLQLCGLLAKL 321
+GVGSYLQLCG+ AK+
Sbjct: 302 EGVGSYLQLCGMYAKI 317
>gi|443896635|dbj|GAC73979.1| replication factor C, subunit RFC2 [Pseudozyma antarctica T-34]
Length = 374
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 189/321 (58%), Positives = 248/321 (77%), Gaps = 1/321 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
+++ S + Y++PWVEKYRP + D+VGN D + RL +I DGN P+L+++G PG GKTT
Sbjct: 10 SAAPSGTMGYELPWVEKYRPLNLDDVVGNKDTIDRLKVIQNDGNCPHLLISGLPGIGKTT 69
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
S+L LA LLG Y+E V+ELNASD+RG+DVVRNKIK FAQKKV+LP G+HK+V+LDEAD
Sbjct: 70 SVLCLARALLGDAYKEGVLELNASDERGVDVVRNKIKTFAQKKVSLPAGRHKIVILDEAD 129
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT AQQALRRTMEIYSN+TRF ACN S+KIIEPIQSRCAI+R+ ++ DE+IL RL+
Sbjct: 130 SMTPAAQQALRRTMEIYSNTTRFCFACNQSNKIIEPIQSRCAILRYGKVKDEQILKRLLE 189
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ + EKV Y EGL AIIFT +GDMRQA+NNLQ+T++G FVN ENVFKVCDQPHP ++
Sbjct: 190 ICEMEKVEYTDEGLAAIIFTTEGDMRQAINNLQSTWTGLGFVNPENVFKVCDQPHPFLIR 249
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFA 300
++ EG D A L +++ GY+ DI+TTLFR++K + + E KLEF+KE G+
Sbjct: 250 ALLTACQEGDVDLAMDKLDEIWAKGYAAVDIVTTLFRVVKTMDRIPEATKLEFIKEIGWT 309
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HM+I +GV + +QL GL+A+L
Sbjct: 310 HMKILEGVATVVQLGGLIARL 330
>gi|241959612|ref|XP_002422525.1| replication factor C subunit, putative [Candida dubliniensis CD36]
gi|223645870|emb|CAX40533.1| replication factor C subunit, putative [Candida dubliniensis CD36]
Length = 323
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/319 (61%), Positives = 250/319 (78%), Gaps = 3/319 (0%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
S ++PWVEKYRP K+ DIVGN + V RL +I +DGNMPN+IL+G PG GKTTSI
Sbjct: 2 SKPVTLELPWVEKYRPKKLEDIVGNEETVERLKLIVQDGNMPNMILSGLPGIGKTTSIHC 61
Query: 66 LAHELLGPNY-REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
LA+ELLG Y +A MELNASDDRGIDVVRNKIK FAQ K++LPPG+ K+++LDEADSMT
Sbjct: 62 LAYELLGEEYYHQATMELNASDDRGIDVVRNKIKQFAQTKISLPPGRQKIIILDEADSMT 121
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
GAQQALRRTMEIYSN+TRFA ACN SSKIIEP+QSRCAI+R++RLSDEE+L+RL+ +++
Sbjct: 122 PGAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNRLSDEEVLARLLEIIK 181
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
E V Y EGL+A++FTA+GDMRQA+NNLQ+T +GF FVN NVFK+ DQPHPL +++++
Sbjct: 182 MEDVQYNTEGLQALVFTAEGDMRQAINNLQSTVAGFEFVNDVNVFKIVDQPHPLVIQSIL 241
Query: 245 RNVLEGK-FDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHM 302
+ L K D A L L+ GYS DI+T+ F++ K + E +L+ +KE GFAHM
Sbjct: 242 LSCLRDKDIDKALELLDGLWYKGYSAIDIVTSTFKVAKTIPNINEQKRLDLIKEIGFAHM 301
Query: 303 RICDGVGSYLQLCGLLAKL 321
R+ +GV +YLQLCGL AK+
Sbjct: 302 RVLEGVATYLQLCGLYAKI 320
>gi|254578476|ref|XP_002495224.1| ZYRO0B06248p [Zygosaccharomyces rouxii]
gi|238938114|emb|CAR26291.1| ZYRO0B06248p [Zygosaccharomyces rouxii]
Length = 321
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/312 (62%), Positives = 248/312 (79%), Gaps = 5/312 (1%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP ++ D VGN + + RL IA+DGNMP+LI++G PG GKTTSI LAHELL
Sbjct: 9 ELPWVEKYRPKQLSDTVGNEETIHRLQQIAKDGNMPHLIISGLPGIGKTTSIHCLAHELL 68
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G +Y + V+ELNASDDRGIDVVRN+IK FAQKK L PGKHK+++LDEADSMTAGAQQAL
Sbjct: 69 GDSYSQGVLELNASDDRGIDVVRNQIKQFAQKKCHLEPGKHKIIILDEADSMTAGAQQAL 128
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTME+YSN+TRFA ACN S+KIIEP+QSRCAI+R+S+LSDE++L RL+ +++ E V Y
Sbjct: 129 RRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEIIKAENVQYT 188
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+GLEA+IFTA+GDMRQA+NNLQ+T +G V+ ENVFK+ D PHPL VK M +L
Sbjct: 189 NDGLEALIFTAEGDMRQAVNNLQSTVAGHSLVSGENVFKIVDSPHPLVVKKM---LLAPT 245
Query: 252 FDDACSGLK-QLYDLGYSPTDIITTLFRIIKN-YEMAEHLKLEFMKEAGFAHMRICDGVG 309
D++ + K +L+D GYS DI+TT FR+ K Y++ E +LE +KE G AHMRI +GVG
Sbjct: 246 LDESIALFKNELWDKGYSSVDIVTTCFRVTKTLYQLKEAKRLEMIKEIGIAHMRILEGVG 305
Query: 310 SYLQLCGLLAKL 321
+YLQL LLAK+
Sbjct: 306 TYLQLACLLAKI 317
>gi|70984108|ref|XP_747574.1| DNA replication factor C subunit Rfc4 [Aspergillus fumigatus
Af293]
gi|66845201|gb|EAL85536.1| DNA replication factor C subunit Rfc4, putative [Aspergillus
fumigatus Af293]
gi|159122360|gb|EDP47481.1| DNA replication factor C subunit Rfc4, putative [Aspergillus
fumigatus A1163]
Length = 348
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 192/321 (59%), Positives = 253/321 (78%), Gaps = 5/321 (1%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A ++ + Y++PWVEKYRP + DIVGN + + RL IIA+DGNMP++I++G PG GKTT
Sbjct: 17 AVTAGAPPDYELPWVEKYRPIFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTT 76
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA +LLG Y+EAV+ELNASD+RGI ++IK FAQKKVTLPPG+HK+V+LDEAD
Sbjct: 77 SILCLARQLLGEAYKEAVLELNASDERGI----SRIKGFAQKKVTLPPGRHKIVILDEAD 132
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT GAQQALRRTMEIYS++TRFA ACN S+KIIEPIQSRCAI+R++RL+D +++ RL
Sbjct: 133 SMTPGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDAQVVKRLKQ 192
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ EKV + +G+ A++F+A+GDMRQA+NNLQ+T+SGF V+ +NVF+V D PHP+ V+
Sbjct: 193 ICDAEKVEHTEDGIAALVFSAEGDMRQAINNLQSTWSGFGLVSGDNVFRVVDSPHPIKVQ 252
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
M++ EGK D A L +L+DLGYS DII+T+FR+ K ++EH KLEF++E GF
Sbjct: 253 AMIKACWEGKVDAALETLNELWDLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIREIGFT 312
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI DGV S LQL G ++KL
Sbjct: 313 HMRILDGVQSLLQLSGCVSKL 333
>gi|164659418|ref|XP_001730833.1| hypothetical protein MGL_1832 [Malassezia globosa CBS 7966]
gi|159104731|gb|EDP43619.1| hypothetical protein MGL_1832 [Malassezia globosa CBS 7966]
Length = 371
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 193/325 (59%), Positives = 253/325 (77%), Gaps = 3/325 (0%)
Query: 1 MASSSSSSSA--YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTG 58
M+SS+ + A Y++PWVEKYRP + D+VGN V RL I GN P+L+L+G PG G
Sbjct: 1 MSSSTGKAQAPGYELPWVEKYRPRYLRDVVGNSATVERLRAIEEHGNCPHLLLSGLPGIG 60
Query: 59 KTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLD 118
KTTS+ LAH LLG Y+EAV+ELNASDDRGIDVVR+KIK FAQKKV+LPPG+HK++VLD
Sbjct: 61 KTTSVHCLAHALLGDAYKEAVLELNASDDRGIDVVRSKIKAFAQKKVSLPPGRHKIIVLD 120
Query: 119 EADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSR 178
EADSMT GAQQALRRTMEIY+ +TRF ACN S+KIIEPIQSRCAI+RF R+SDEE+L R
Sbjct: 121 EADSMTPGAQQALRRTMEIYAPTTRFCFACNQSNKIIEPIQSRCAILRFGRISDEELLRR 180
Query: 179 LMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPL 238
L+ + + E V Y EGL A++FTA+GDMRQA+NNLQ+T++G +V+ +NVFKVCDQPHPL
Sbjct: 181 LLQICEAEHVKYSDEGLAAVVFTAEGDMRQAVNNLQSTWTGMGYVSPDNVFKVCDQPHPL 240
Query: 239 HVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEA 297
V++++ G+ D A L+ L+ LGYS DI+TTLFR+++ + + E +KLE+++E
Sbjct: 241 VVRDVLDKCYAGRVDSALDQLESLWSLGYSSLDIVTTLFRVVRTMDSLPEAVKLEYIREI 300
Query: 298 GFAHMRICDGVGSYLQLCGLLAKLS 322
G+ HMR +GV + LQL L+A+L+
Sbjct: 301 GWTHMRTLEGVATLLQLSALVARLA 325
>gi|119467812|ref|XP_001257712.1| DNA replication factor C subunit Rfc4, putative [Neosartorya
fischeri NRRL 181]
gi|119405864|gb|EAW15815.1| DNA replication factor C subunit Rfc4, putative [Neosartorya
fischeri NRRL 181]
Length = 348
Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust.
Identities = 191/321 (59%), Positives = 253/321 (78%), Gaps = 5/321 (1%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A ++ + Y++PWVEKYRP + DIVGN + + RL IIA+DGNMP++I++G PG GKTT
Sbjct: 17 AVTAGAPPDYELPWVEKYRPIFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTT 76
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA +LLG Y+EAV+ELNASD+RG+ ++IK FAQKKVTLPPG+HK+V+LDEAD
Sbjct: 77 SILCLARQLLGEAYKEAVLELNASDERGM----SRIKGFAQKKVTLPPGRHKIVILDEAD 132
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT GAQQALRRTMEIYS++TRFA ACN S+KIIEPIQSRCAI+R++RL+D +++ RL
Sbjct: 133 SMTPGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDAQVVKRLKQ 192
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ EKV + +G+ A++F+A+GDMRQA+NNLQ+T+SGF V+ +NVF+V D PHP+ V+
Sbjct: 193 ICDAEKVEHTEDGIAALVFSAEGDMRQAINNLQSTWSGFGLVSGDNVFRVVDSPHPIKVQ 252
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
M++ EGK D A L +L+DLGYS DII+T+FR+ K ++EH KLEF++E GF
Sbjct: 253 AMIKACWEGKVDAALETLNELWDLGYSSHDIISTMFRVTKTIPTLSEHSKLEFIREIGFT 312
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI DGV S LQL G ++KL
Sbjct: 313 HMRILDGVQSLLQLSGCVSKL 333
>gi|401840377|gb|EJT43220.1| RFC4-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 323
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/311 (61%), Positives = 246/311 (79%), Gaps = 5/311 (1%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + DIVGN + + RL IA+DGNMP++I++G P GKTTS+ LAHELLG
Sbjct: 9 LPWVEKYRPKVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPSIGKTTSVHCLAHELLG 68
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+Y + V+ELNASDDRGIDVVRN+IK FAQKK+ LP G+HK+++LDEADSMTAGAQQALR
Sbjct: 69 NSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPQGRHKIIILDEADSMTAGAQQALR 128
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME+YSNSTRFA ACN S+KIIEP+QSRCAI+R+S+LSDE++L RL+ +++ E V Y
Sbjct: 129 RTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLEIIKLEDVKYTN 188
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GLEAIIFTA+GDMRQA+NNLQ+T +G VN +NVF++ D PHPL VK M +L
Sbjct: 189 DGLEAIIFTAEGDMRQAINNLQSTVAGHDLVNADNVFRIVDSPHPLIVKKM---LLATNL 245
Query: 253 DDACSGLK-QLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVGS 310
DD+ L+ L+ GYS DI+TT FR+ KN ++ E ++LE +KE G HMRI +GVG+
Sbjct: 246 DDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLTQVKESVRLEMIKEIGLTHMRILEGVGT 305
Query: 311 YLQLCGLLAKL 321
YLQL G+LAK+
Sbjct: 306 YLQLAGMLAKI 316
>gi|68473223|ref|XP_719417.1| hypothetical protein CaO19.7658 [Candida albicans SC5314]
gi|46441233|gb|EAL00532.1| hypothetical protein CaO19.7658 [Candida albicans SC5314]
gi|238880430|gb|EEQ44068.1| activator 1 37 kDa subunit [Candida albicans WO-1]
Length = 323
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/319 (61%), Positives = 253/319 (79%), Gaps = 3/319 (0%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
S ++PWVEKYRP K+ DIVGN + V RL +I +DGNMPN+I++G PG GKTTSI
Sbjct: 2 SKPVTLELPWVEKYRPKKLEDIVGNEETVERLKLIVQDGNMPNMIISGLPGIGKTTSIHC 61
Query: 66 LAHELLG-PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
LA+ELLG +Y +A MELNASDDRGIDVVRNKIK FAQ K++LPPG+ K+++LDEADSMT
Sbjct: 62 LAYELLGDEHYHQATMELNASDDRGIDVVRNKIKQFAQTKISLPPGRQKIIILDEADSMT 121
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
GAQQALRRT+EIYSN+TRFA ACN SSKIIEP+QSRCAI+R++RLSDEE+L+RL+ +++
Sbjct: 122 PGAQQALRRTIEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNRLSDEEVLARLLEIIK 181
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
E V Y EGL+A+IFTA+GDMRQA+NNLQ+T +GF FVN NVFK+ DQPHPL +++++
Sbjct: 182 MEDVKYNTEGLQALIFTAEGDMRQAINNLQSTVAGFGFVNDVNVFKIVDQPHPLVIQSIL 241
Query: 245 RNVLEGK-FDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHM 302
+ L+ K D A L L+ GYS DI+T+ F++ K ++E +L+ +KE GFAHM
Sbjct: 242 LSCLKDKDIDKALGLLDGLWYKGYSAIDIVTSTFKVAKTIPNISEQKRLDVIKEIGFAHM 301
Query: 303 RICDGVGSYLQLCGLLAKL 321
R+ +GV +YLQLCGL AK+
Sbjct: 302 RVLEGVATYLQLCGLYAKI 320
>gi|448123321|ref|XP_004204663.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
gi|448125599|ref|XP_004205221.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
gi|358249854|emb|CCE72920.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
gi|358350202|emb|CCE73481.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
Length = 327
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/322 (61%), Positives = 251/322 (77%), Gaps = 5/322 (1%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
SS S ++PWVEKYRP K+ DIVGN + V RL +IA DGNMP++IL+G PG GKTTSI
Sbjct: 3 SSYSQHLELPWVEKYRPKKLDDIVGNEETVERLKLIALDGNMPHMILSGLPGIGKTTSIH 62
Query: 65 ALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM 123
LA+ELLGP Y +A MELNASDDRGIDVVRNKIK FAQ K+ LP G+HK+++LDEADSM
Sbjct: 63 CLAYELLGPELYHQATMELNASDDRGIDVVRNKIKQFAQTKIQLPAGRHKIIILDEADSM 122
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T GAQQALRRTMEIYSN+TRFA ACN SSKIIEP+QSRCAI+R+++LSDE++L RL+ +
Sbjct: 123 TPGAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLSDEQVLQRLLEIT 182
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
+ E V Y EGL+A+IFTA+GDMRQA+NNLQ+T +GF FVN NVFK+ DQPHPL ++ +
Sbjct: 183 KLEDVKYNSEGLQALIFTAEGDMRQAINNLQSTVAGFGFVNDVNVFKIVDQPHPLIIRKI 242
Query: 244 VRNVL--EGK-FDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGF 299
+ +G+ D+A L L+D GYS DI+T+ F++ K + E +L+ +KE GF
Sbjct: 243 LSYCCSKDGQGVDNALQLLDSLWDKGYSAIDIVTSTFKVAKTLPGINEQKRLDMIKEIGF 302
Query: 300 AHMRICDGVGSYLQLCGLLAKL 321
AHMRI +GV +YLQLCGL +KL
Sbjct: 303 AHMRILEGVSTYLQLCGLYSKL 324
>gi|388855091|emb|CCF51222.1| probable RFC4-DNA replication factor C, 37 kDa subunit [Ustilago
hordei]
Length = 343
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 187/313 (59%), Positives = 248/313 (79%), Gaps = 1/313 (0%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
Y++PWVEKYRP ++ D+VGN D + RL +I DGN P+L+++G PG GKTTS+L LA
Sbjct: 19 GYELPWVEKYRPLRLDDVVGNRDTIDRLKVIQNDGNCPHLLISGLPGIGKTTSVLCLARA 78
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
LLG Y+E V+ELNASD+RG+D+VRNKIK FAQKKV+LPPG+HK+V+LDEADSMT AQQ
Sbjct: 79 LLGDAYKEGVLELNASDERGVDIVRNKIKNFAQKKVSLPPGRHKIVILDEADSMTPAAQQ 138
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRRTMEIYSN+TRF ACN S+KIIEPIQSRCAI+R++++ DE+IL RL+ + + E V
Sbjct: 139 ALRRTMEIYSNTTRFCFACNQSNKIIEPIQSRCAILRYAKIRDEQILKRLLEICKMEGVE 198
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
Y EGL AIIFT++GDMRQA+NNLQ+TY+G FVN ENVFKVCDQPHP +++++ +
Sbjct: 199 YSDEGLGAIIFTSEGDMRQAINNLQSTYTGLGFVNPENVFKVCDQPHPFLIRSLLMACKK 258
Query: 250 GKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHMRICDGV 308
G D+A L +++ GY+ DI+TTLFR++K + + E KLEF+KE G+ HM+I +GV
Sbjct: 259 GVVDEAMEKLDEIWSKGYAAVDIVTTLFRVVKTLDGVPEATKLEFIKEIGWTHMKILEGV 318
Query: 309 GSYLQLCGLLAKL 321
+ +QL GL+A+L
Sbjct: 319 ATVVQLGGLIARL 331
>gi|294654838|ref|XP_456919.2| DEHA2A13574p [Debaryomyces hansenii CBS767]
gi|199429188|emb|CAG84897.2| DEHA2A13574p [Debaryomyces hansenii CBS767]
Length = 327
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/317 (61%), Positives = 249/317 (78%), Gaps = 5/317 (1%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
+ ++PWVEKYRP K+ DIVGN + V RL ++ DGNMP++I++G PG GKTTSI LA+E
Sbjct: 8 SLELPWVEKYRPHKLDDIVGNEETVERLKLLVEDGNMPHMIISGLPGIGKTTSIHCLAYE 67
Query: 70 LLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQ 128
LLGP Y++A +ELNASDDRGIDVVRNKIK FAQ K++LP G+HK+++LDEADSMT GAQ
Sbjct: 68 LLGPELYQQATLELNASDDRGIDVVRNKIKQFAQTKISLPAGRHKIIILDEADSMTPGAQ 127
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKV 188
QALRRTMEIYSN+TRFA ACN SSKIIEP+QSRCAI+R+++LSDE++L RL+ V + E V
Sbjct: 128 QALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYTKLSDEQVLERLLEVTKLEDV 187
Query: 189 PYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVL 248
Y EGL+A+IFTA+GDMRQA+NNLQ+T +GF FVN NVFK+ DQPHPL +K ++ +
Sbjct: 188 KYNSEGLQALIFTAEGDMRQAINNLQSTVAGFGFVNDINVFKIVDQPHPLVIKKILASCC 247
Query: 249 E---GKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHMRI 304
G D+A L L++ GYS DI+T+ FR+ K ++E +L+ +KE GF HMR+
Sbjct: 248 SNKGGNIDEALELLDNLWEKGYSAIDIVTSSFRVAKTLPGISESKRLDMIKEIGFVHMRV 307
Query: 305 CDGVGSYLQLCGLLAKL 321
+GV SYLQLCGL AKL
Sbjct: 308 LEGVSSYLQLCGLFAKL 324
>gi|340729088|ref|XP_003402840.1| PREDICTED: replication factor C subunit 2-like [Bombus terrestris]
Length = 316
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 191/306 (62%), Positives = 240/306 (78%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY 75
+EKYRP DIVGN D V+RL + A GN PN+I+AGPPG GKTT+IL LA LLGP +
Sbjct: 4 IEKYRPQIFSDIVGNEDTVSRLSVFAEHGNCPNIIIAGPPGVGKTTTILCLARILLGPVF 63
Query: 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTM 135
+EAV+ELNAS++RGIDVVRNKIKMFAQKKV L GKHK+++LDEADSMT GAQQALRRTM
Sbjct: 64 KEAVLELNASNERGIDVVRNKIKMFAQKKVNLAKGKHKIIILDEADSMTDGAQQALRRTM 123
Query: 136 EIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGL 195
EIYSN+TRFALACN S KIIEPIQSRCA++R+ +LSD +IL++++ V Q+E V + +GL
Sbjct: 124 EIYSNTTRFALACNTSEKIIEPIQSRCAMLRYGKLSDAQILAKIIEVCQKEDVSHTDDGL 183
Query: 196 EAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDA 255
EAI+FTA GDMRQALNNLQ+TY+GF VN ENVFKVCD+PHPL VK M+ +GK A
Sbjct: 184 EAIVFTAQGDMRQALNNLQSTYNGFGHVNSENVFKVCDEPHPLLVKEMLELCAQGKISKA 243
Query: 256 CSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLC 315
++ L+ +GYS D+++ +FR+ N + E LKL+F+KE G H+ I DG+ S LQ+
Sbjct: 244 YGIMEHLWKMGYSAEDLVSNIFRVCTNLSIEEPLKLDFIKEIGITHLGIVDGINSLLQMN 303
Query: 316 GLLAKL 321
LLA+L
Sbjct: 304 SLLARL 309
>gi|366988087|ref|XP_003673810.1| hypothetical protein NCAS_0A08710 [Naumovozyma castellii CBS 4309]
gi|342299673|emb|CCC67429.1| hypothetical protein NCAS_0A08710 [Naumovozyma castellii CBS 4309]
Length = 321
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/312 (61%), Positives = 249/312 (79%), Gaps = 5/312 (1%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + DIVGN + + RL IA+DGNMP++I++G PG GKTTS+L LAHELL
Sbjct: 9 ELPWVEKYRPRVLDDIVGNEETILRLKQIAQDGNMPHMIISGLPGIGKTTSVLCLAHELL 68
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G +Y +AV+ELNASDDRGI+VVRN+IK FAQKK LPPGKHK+++LDEADSMTAGAQQAL
Sbjct: 69 GDDYSKAVLELNASDDRGIEVVRNQIKQFAQKKSLLPPGKHKIIILDEADSMTAGAQQAL 128
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTME+YSNSTRFA ACN S+KIIEP+QSRCAI+R+++LSDE++L RL+ +++ E V Y
Sbjct: 129 RRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYTKLSDEQVLKRLLQIIKAEDVKYT 188
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+GLEAIIFTA+GDMRQA+NNLQ+T +G VN +NVFK+ D PHPL V+ M +L
Sbjct: 189 NDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNGDNVFKIVDSPHPLVVRKM---LLAPT 245
Query: 252 FDDACSGL-KQLYDLGYSPTDIITTLFRIIKN-YEMAEHLKLEFMKEAGFAHMRICDGVG 309
D++ + L K L+ GYS DI+TT FR+ K+ +++ E +LE +KE G HMRI +GV
Sbjct: 246 LDESLTHLRKDLWGKGYSAVDIVTTSFRVTKSLFDIRESKRLEMIKEIGITHMRILEGVS 305
Query: 310 SYLQLCGLLAKL 321
+YLQL +LAK+
Sbjct: 306 TYLQLASMLAKI 317
>gi|195012119|ref|XP_001983484.1| GH15919 [Drosophila grimshawi]
gi|193896966|gb|EDV95832.1| GH15919 [Drosophila grimshawi]
Length = 331
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 191/316 (60%), Positives = 245/316 (77%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PW+EKYRP K +IVGN D VARL + + GN PN+I+AGPPG GKTT+I LA LL
Sbjct: 15 NLPWIEKYRPVKFEEIVGNEDTVARLSVFSTQGNSPNIIIAGPPGVGKTTTIQCLARILL 74
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G +Y++AV+ELNAS++RGIDVVRNKIKMFAQ+KVTLP G+HK+V+LDEADSMT GAQQ+L
Sbjct: 75 GDSYKDAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQSL 134
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTMEIYSN+TRFALACN S KIIEPIQSRCA++RF++LSD ++L++L+ V Q EK+ Y
Sbjct: 135 RRTMEIYSNTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVCQLEKLKYD 194
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+GLEAI+FTA GDMRQ LNNLQ+T GF + NVFKVCD+PHP+ +++M+++
Sbjct: 195 EDGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITGTNVFKVCDEPHPMLLQDMLQHCAAND 254
Query: 252 FDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A L +L+ LGY+P DII +FR+ K + E LKL F++E G HM+I DG S
Sbjct: 255 IHKAYKILAKLWRLGYAPEDIIGNIFRVCKRLNVDEQLKLNFIREIGITHMKIVDGCNSL 314
Query: 312 LQLCGLLAKLSIVRET 327
LQL LLA+L IV E+
Sbjct: 315 LQLTSLLARLCIVAES 330
>gi|350636056|gb|EHA24416.1| hypothetical protein ASPNIDRAFT_40316 [Aspergillus niger ATCC 1015]
Length = 342
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/321 (60%), Positives = 250/321 (77%), Gaps = 11/321 (3%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A ++ + Y++PWVEKYRP + DIVGN + V RL IIA+DGNMP++I++G PG GKTT
Sbjct: 17 AHTAGAPPDYELPWVEKYRPVYLDDIVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTT 76
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA +LLG Y+EAV+ELNASD+RG FAQKKVTLPPG+HK+V+LDEAD
Sbjct: 77 SILCLARQLLGDAYKEAVLELNASDERG----------FAQKKVTLPPGRHKLVILDEAD 126
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT+GAQQALRRTMEIYS++TRFA ACN S+KIIEPIQSRCAI+R++RL+D +I+ RL
Sbjct: 127 SMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDAQIVKRLKQ 186
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
V EKV + EG+ A++F+A+GDMRQA+NNLQ+T+SGF FV+ +NVF+V D PHP+ V+
Sbjct: 187 VCDAEKVEHNEEGIAALVFSAEGDMRQAINNLQSTWSGFGFVSGDNVFRVVDSPHPIKVQ 246
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
M++ EGK D A L +L++LGYS DII+T+FR+ K ++EH KLEF++E GF
Sbjct: 247 AMIKACWEGKVDAALETLNELWELGYSSHDIISTMFRVTKTIPTLSEHSKLEFIREIGFT 306
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI DGV S LQL G +AKL
Sbjct: 307 HMRILDGVQSLLQLSGCVAKL 327
>gi|195440776|ref|XP_002068216.1| GK10084 [Drosophila willistoni]
gi|194164301|gb|EDW79202.1| GK10084 [Drosophila willistoni]
Length = 333
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/314 (61%), Positives = 242/314 (77%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PW+EKYRP K +IVGN D VARL + A GN PN+I+AGPPG GKTT+I LA LLG
Sbjct: 18 LPWIEKYRPVKFDEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLG 77
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+Y+EAV+ELNAS++RGIDVVRNKIKMFAQ+KVTLP G+HK+V+LDEADSMT GAQQALR
Sbjct: 78 DSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPKGRHKIVILDEADSMTEGAQQALR 137
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTMEIYSN+TRFALACN S KIIEPIQSRCA++RF++LSD +++++L+ V Q E + Y
Sbjct: 138 RTMEIYSNTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDSQVMAKLIEVSQLENLKYEE 197
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GLEAI+FTA GDMRQALNNLQ+T GF + NVFKVCD+PHP+ +++M+ +
Sbjct: 198 DGLEAIVFTAQGDMRQALNNLQSTAQGFGDITGPNVFKVCDEPHPMLLQDMLHHCAGNDI 257
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
A L +L+ LGY+P DII +FR+ K + E +KL F++E G HM+I DG S L
Sbjct: 258 HKAYKILAKLWKLGYAPEDIIGNIFRVCKRLNIDEQMKLNFIREIGITHMKIVDGNNSLL 317
Query: 313 QLCGLLAKLSIVRE 326
QL GLLA+L V E
Sbjct: 318 QLTGLLARLCQVAE 331
>gi|195375032|ref|XP_002046307.1| GJ12823 [Drosophila virilis]
gi|194153465|gb|EDW68649.1| GJ12823 [Drosophila virilis]
Length = 331
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 190/316 (60%), Positives = 245/316 (77%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PW+EKYRP K +IVGN D VARL + + GN PN+I+AGPPG GKTT+I LA LL
Sbjct: 15 NLPWIEKYRPVKFDEIVGNEDTVARLSVFSTQGNSPNIIIAGPPGVGKTTTIQCLARILL 74
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G +Y++AV+ELNAS++RGIDVVRNKIKMFAQ+KVTLP G+HK+V+LDEADSMT GAQQ+L
Sbjct: 75 GDSYKDAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQSL 134
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTMEIYSN+TRFALACN S KIIEPIQSRCA++RF++LSD ++L++L+ V Q EK+ Y
Sbjct: 135 RRTMEIYSNTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVCQLEKLKYD 194
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+GLEAI+FTA GDMRQALNNLQ+T GF + NVFKVCD+PHP+ +++M+++
Sbjct: 195 EDGLEAIVFTAQGDMRQALNNLQSTAQGFGDITGANVFKVCDEPHPMLLQDMLQHCAAND 254
Query: 252 FDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A L +L+ LGY+P DII +FR+ K + E LKL F++E G HM+I DG S
Sbjct: 255 IHKAYKILAKLWRLGYAPEDIIGNIFRVCKRLNVDEQLKLNFIREIGITHMKIVDGCNSL 314
Query: 312 LQLCGLLAKLSIVRET 327
LQL LLA+L + E+
Sbjct: 315 LQLTSLLARLCMAAES 330
>gi|195135525|ref|XP_002012183.1| GI16571 [Drosophila mojavensis]
gi|193918447|gb|EDW17314.1| GI16571 [Drosophila mojavensis]
Length = 331
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 190/316 (60%), Positives = 245/316 (77%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PW+EKYRP K +IVGN D VARL + + GN PN+I+AGPPG GKTT+I LA LL
Sbjct: 15 NLPWIEKYRPVKFDEIVGNEDTVARLSVFSTQGNSPNIIIAGPPGVGKTTTIQCLARILL 74
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G +Y++AV+ELNAS++RGIDVVRNKIKMFAQ+KVTLP G+HK+V+LDEADSMT GAQQ+L
Sbjct: 75 GDSYKDAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQSL 134
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTMEIYSN+TRFALACN S KIIEPIQSRCA++RFS+LSD ++L++L+ V Q E++ Y
Sbjct: 135 RRTMEIYSNTTRFALACNTSEKIIEPIQSRCAMLRFSKLSDAQVLAKLIEVCQLEQLKYD 194
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+GLEAI+FTA GDMRQALNNLQ+T GF + NVFKVCD+PHP+ +++M+++
Sbjct: 195 EDGLEAIVFTAQGDMRQALNNLQSTAQGFGEITGANVFKVCDEPHPMLLQDMLQHCASND 254
Query: 252 FDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A L +L+ LGY+P DII +FR+ K + E LKL F++E G HM+I DG S
Sbjct: 255 IHKAYKILAKLWRLGYAPEDIIGNIFRVCKRLNVDEQLKLNFIREIGITHMKIVDGCNSL 314
Query: 312 LQLCGLLAKLSIVRET 327
LQL LLA+L + E+
Sbjct: 315 LQLTSLLARLCMTAES 330
>gi|410730707|ref|XP_003980174.1| hypothetical protein NDAI_0G05150 [Naumovozyma dairenensis CBS 421]
gi|401780351|emb|CCK73498.1| hypothetical protein NDAI_0G05150 [Naumovozyma dairenensis CBS 421]
Length = 321
Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/312 (62%), Positives = 247/312 (79%), Gaps = 5/312 (1%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + DIVGN + + RL IA+DGNMP++I++G PG GKTTSI LAHELL
Sbjct: 9 ELPWVEKYRPHVLKDIVGNEETILRLEQIAQDGNMPHMIISGLPGIGKTTSIHCLAHELL 68
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G Y AV+ELNASDDRGIDVVRN+IK FAQKK LPPGKHK+++LDEADSMTAGAQQAL
Sbjct: 69 GDAYSRAVLELNASDDRGIDVVRNQIKHFAQKKCYLPPGKHKIIILDEADSMTAGAQQAL 128
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTME++SNSTRFA ACN S+KIIEP+QSRCAI+R+S+LSDE++L RL+ +++ E V Y
Sbjct: 129 RRTMELFSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEIIKLEDVKYT 188
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+GLEAIIFTA+GDMRQA+NNLQ+T +G VN +NVFK+ D PHPL V+ M +L
Sbjct: 189 NDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNGDNVFKIVDSPHPLIVRRM---LLAPT 245
Query: 252 FDDACSGLK-QLYDLGYSPTDIITTLFRIIKN-YEMAEHLKLEFMKEAGFAHMRICDGVG 309
D+A + L+ L+ GYS DI+TT FR+ KN +E+ E+ +LE +KE G HMRI +GV
Sbjct: 246 LDEALTYLRDDLWGKGYSAVDIVTTSFRVTKNLFELKENKRLEMIKEIGITHMRILEGVS 305
Query: 310 SYLQLCGLLAKL 321
+YLQL +LAK+
Sbjct: 306 TYLQLASMLAKI 317
>gi|112982853|ref|NP_001036917.1| replication factor C subunit 2 [Bombyx mori]
gi|54290087|dbj|BAD61055.1| RFC40 [Bombyx mori]
Length = 340
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 183/316 (57%), Positives = 248/316 (78%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
SSS + ++PW+EKYRP DIVGN D V+RL + A+ GN PN+I+AGPPG GKTT+IL
Sbjct: 14 SSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILC 73
Query: 66 LAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
LA LLG ++++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLPPG+HK+V+LDEADSMT
Sbjct: 74 LARVLLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD 133
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
GAQQALRRTME+YS++TRFALA N S KIIEPIQSRCA++R+SRLSD +IL++++ + +
Sbjct: 134 GAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNK 193
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E + Y EG+ A++FTA GD+R ALNNLQ+T GF ++ +NVFKVCD+PHP+ V+ M+
Sbjct: 194 ENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFGHISPDNVFKVCDEPHPMVVRQMLE 253
Query: 246 NVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
+ +A + +L +GY+ DI++ +FR+ K +++E LKL F++E G HMR+
Sbjct: 254 ACTKQDIHEAYKVIAKLCKIGYAAEDIVSNIFRVCKTLDISEELKLAFIREIGLTHMRVA 313
Query: 306 DGVGSYLQLCGLLAKL 321
DG+ S LQL GLLA++
Sbjct: 314 DGLSSPLQLAGLLARM 329
>gi|71004420|ref|XP_756876.1| hypothetical protein UM00729.1 [Ustilago maydis 521]
gi|46095885|gb|EAK81118.1| hypothetical protein UM00729.1 [Ustilago maydis 521]
Length = 343
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 183/316 (57%), Positives = 249/316 (78%), Gaps = 1/316 (0%)
Query: 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
+++ Y++PWVEKYRP ++ D+VGN D + RL +I +DGN P+L+++G PG GKTTS+L L
Sbjct: 16 NTTGYELPWVEKYRPLRLDDVVGNKDTIDRLKVIQKDGNCPHLLISGLPGIGKTTSVLCL 75
Query: 67 AHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG 126
A LLG Y+E V+ELNASD+RG+DVVRNKIK FAQKKV+LPPG+HK+++LDEADSMT
Sbjct: 76 ARALLGEAYKEGVLELNASDERGVDVVRNKIKTFAQKKVSLPPGRHKIIILDEADSMTPA 135
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQQALRRTMEIYSN+TRF ACN S+KIIEPIQSRCAI+R++++ DE IL RL+ + + E
Sbjct: 136 AQQALRRTMEIYSNTTRFCFACNQSNKIIEPIQSRCAILRYAKVRDEHILKRLLEICEME 195
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
V Y EGL AIIFT +GDMRQA+NNLQ+T++G FV+ +NVFKVCDQPHP +++++
Sbjct: 196 NVEYSDEGLAAIIFTTEGDMRQAINNLQSTWTGLGFVSPDNVFKVCDQPHPFLIRSILLA 255
Query: 247 VLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHMRIC 305
+G D+A L ++ GY+ DI+TTLFR++K + + E KL+F+KE G+ H++I
Sbjct: 256 CKDGHVDEALEKLDEISSKGYAAVDIVTTLFRVVKTLDAIPEATKLDFIKEIGWTHIKIL 315
Query: 306 DGVGSYLQLCGLLAKL 321
+GV + +QL GLLA+L
Sbjct: 316 EGVATLVQLGGLLARL 331
>gi|290986773|ref|XP_002676098.1| predicted protein [Naegleria gruberi]
gi|284089698|gb|EFC43354.1| predicted protein [Naegleria gruberi]
Length = 337
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/335 (58%), Positives = 259/335 (77%), Gaps = 6/335 (1%)
Query: 1 MASSSSSS---SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGT 57
+AS+SSSS + D PWVE+YRP + DIVGN +AV RL +IA +GNMPNLIL+GPPGT
Sbjct: 2 IASNSSSSGVPTEMDRPWVERYRPIDMDDIVGNEEAVMRLRVIAEEGNMPNLILSGPPGT 61
Query: 58 GKTTSILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVV 116
GKTTSI+ LA LLG Y+EAV+ELNASD+R +DVVRNKIK FAQKKV LPP +HK+V+
Sbjct: 62 GKTTSIMCLARSLLGKEVYKEAVLELNASDERTLDVVRNKIKQFAQKKVNLPPNRHKIVI 121
Query: 117 LDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEIL 176
LDEADSMT+ AQQA+RR MEIYS++TRFALACN SSKIIEPIQSRCA+VR+ RL+D E+L
Sbjct: 122 LDEADSMTSAAQQAMRRIMEIYSSTTRFALACNDSSKIIEPIQSRCALVRYKRLTDAELL 181
Query: 177 SRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPH 236
+RL+V+ + E V +GLE+I++T+DGDMR A+N+LQATY GF VN NVFKVCDQPH
Sbjct: 182 TRLIVICELEHVQKTEDGLESILYTSDGDMRNAINSLQATYQGFGIVNATNVFKVCDQPH 241
Query: 237 PLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKN--YEMAEHLKLEFM 294
P+ ++ ++ + ++G + L +L GYS D+I+TL +++++ +M E+ +L+F+
Sbjct: 242 PVAIQTIIGSCIQGDLMSSQKELTKLMGEGYSSQDVISTLSKVVRSGAVQMPEYAQLQFI 301
Query: 295 KEAGFAHMRICDGVGSYLQLCGLLAKLSIVRETAK 329
KE G H+RI DGV + LQL LLA+L + T+K
Sbjct: 302 KEIGDCHLRISDGVDTPLQLTALLARLCKIIITSK 336
>gi|281204159|gb|EFA78355.1| replication factor C subunit [Polysphondylium pallidum PN500]
Length = 319
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 188/304 (61%), Positives = 240/304 (78%), Gaps = 15/304 (4%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
SS+ S +PWVEKYRP ++ DIVGN + V+RL I+ DGN+PN+I++GPPGTGKTTSIL
Sbjct: 9 SSAKSDALLPWVEKYRPKEIKDIVGNEETVSRLESISMDGNLPNIIISGPPGTGKTTSIL 68
Query: 65 ALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
LA +LLGPNY+EAV ELNASDDR +DVVR+KIK FAQ KVTLPPG+HK+++LDEADSMT
Sbjct: 69 CLAQQLLGPNYKEAVYELNASDDRTLDVVRDKIKTFAQTKVTLPPGRHKIIILDEADSMT 128
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
+GAQQALRR MEIYS++TRFALACN SSKIIEPIQSRCA++R++RL+D ++L RL V++
Sbjct: 129 SGAQQALRRIMEIYSSTTRFALACNQSSKIIEPIQSRCAVLRYTRLTDAQVLKRLREVIE 188
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EKVPY +GLEA+IFTA+GDMRQALNNLQ+T++GF V+ +NVF+ C
Sbjct: 189 AEKVPYTDDGLEALIFTAEGDMRQALNNLQSTFTGFEMVSGDNVFRHC------------ 236
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRI 304
+G+F+DA K L+D GYS DII+T F++ K +M E+ KLEF+KE GF ++RI
Sbjct: 237 ---ADGRFEDAFKNTKDLWDKGYSSMDIISTFFKVAKTLDMPEYQKLEFIKEIGFTNLRI 293
Query: 305 CDGV 308
GV
Sbjct: 294 TQGV 297
>gi|383858073|ref|XP_003704527.1| PREDICTED: replication factor C subunit 2-like [Megachile
rotundata]
Length = 351
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 185/296 (62%), Positives = 235/296 (79%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PW+EKYRP DIVGN D V+RL + A++GN PN+I+AGPPG GKTT+IL LA LLG
Sbjct: 36 LPWIEKYRPQVFSDIVGNEDTVSRLSVFAKNGNCPNIIIAGPPGVGKTTTILCLARILLG 95
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
P ++EAV+ELNAS+DRGIDVVRNKIKMFAQK+V L GKHK+++LDEADSMT GAQQALR
Sbjct: 96 PAFKEAVLELNASNDRGIDVVRNKIKMFAQKRVNLDKGKHKIIILDEADSMTDGAQQALR 155
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTMEIYSN+TRFALACN S KIIEPIQSRCA++R+ +L+D ++L++++ V Q+E V Y
Sbjct: 156 RTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYGKLTDAQVLAKILEVCQKENVSYTD 215
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GLEAI+FTA GDMRQALNNLQ+TY+GF VN ENVFKVCD+PHPL VK M+ +
Sbjct: 216 DGLEAIVFTAQGDMRQALNNLQSTYNGFGHVNSENVFKVCDEPHPLLVKEMLEFCTQSNI 275
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGV 308
A L+ L+ +GYS D+I+ +FR+ KN + E LKL+F++E G H+ I DG+
Sbjct: 276 GKAYQVLQHLWKMGYSAEDLISNIFRVCKNLPIDETLKLDFVREIGITHLGIVDGM 331
>gi|190345167|gb|EDK37005.2| hypothetical protein PGUG_01103 [Meyerozyma guilliermondii ATCC
6260]
Length = 327
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/321 (58%), Positives = 251/321 (78%), Gaps = 6/321 (1%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
+ ++PWVEKYRP K+ DIVGN + V RL +IA+DGNMP++I++G PG GKTTSI LA+E
Sbjct: 7 SLELPWVEKYRPHKLDDIVGNEETVERLKLIAQDGNMPHMIISGLPGIGKTTSIHCLAYE 66
Query: 70 LLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQ 128
LLG Y +A +ELNASDDRGIDVVRNKIK FAQ K++LPPG+HK+++LDEADSMT GAQ
Sbjct: 67 LLGKTMYDQATLELNASDDRGIDVVRNKIKQFAQTKISLPPGRHKIIILDEADSMTPGAQ 126
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKV 188
QALRRTMEIYSN+TRFA ACN SSKIIEP+QSRCAI+R+++L+D+++LSRL+ + + E V
Sbjct: 127 QALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLADDQVLSRLLEIAKAEDV 186
Query: 189 PYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR--- 245
Y +GL+A+IFTA+GDMRQA+NN+Q+T +GF FV+ NVFK+ DQPHPL +K ++
Sbjct: 187 KYNSQGLQALIFTAEGDMRQAINNMQSTVAGFGFVDDVNVFKIVDQPHPLVIKKILNSCC 246
Query: 246 -NVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHMR 303
N +G D A L L++ GYS DI+T+ FR+ K ++E +L+ +KE G HMR
Sbjct: 247 SNDGKGDIDTALRLLDDLWNKGYSAIDIVTSTFRVAKTLPGISESKRLDIIKEVGLVHMR 306
Query: 304 ICDGVGSYLQLCGLLAKLSIV 324
+ +GV +YLQLCGL AK+ +
Sbjct: 307 VLEGVSTYLQLCGLFAKICTI 327
>gi|397618558|gb|EJK64947.1| hypothetical protein THAOC_14258 [Thalassiosira oceanica]
Length = 338
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/315 (62%), Positives = 239/315 (75%), Gaps = 9/315 (2%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + D+VGN D + RL IA DGNMPNLIL GPPGTGKTTS+ ALA +LLG
Sbjct: 15 PWVEKYRPRLLGDVVGNEDTLVRLRAIAEDGNMPNLILCGPPGTGKTTSVHALARQLLGS 74
Query: 74 NYREAVMELNASDDRGIDV-------VRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG 126
Y V+ELNASD RGIDV VR+ I + + T HK+++LDEADSMT+
Sbjct: 75 AYSNGVLELNASDSRGIDVSMEESRHVRSLISV--TRYTTAYLFSHKIIILDEADSMTSA 132
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQQALRRTMEIYSN+TRFALACN+S+KIIEPIQSR AI+R+SRL+DE+IL RL V +EE
Sbjct: 133 AQQALRRTMEIYSNTTRFALACNISTKIIEPIQSRAAILRYSRLTDEQILQRLQYVCKEE 192
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
+V Y GLEAIIFTA+GDMR ALNNLQAT SGF VN+ NVFKVCDQPHP VK ++ +
Sbjct: 193 EVTYTDGGLEAIIFTAEGDMRNALNNLQATVSGFEMVNKANVFKVCDQPHPETVKGIISS 252
Query: 247 VLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICD 306
L+G+ +A + +K L+ GYS +DII T+F++ K Y++ E LKLE++KE GF HMRI D
Sbjct: 253 CLKGETSEAVTKVKDLWQTGYSCSDIIGTIFKVTKLYDIPEALKLEYLKEIGFTHMRIAD 312
Query: 307 GVGSYLQLCGLLAKL 321
GVG+ LQL GL A+L
Sbjct: 313 GVGTLLQLLGLAARL 327
>gi|325186968|emb|CCA21512.1| replication factor C subunit 2 putative [Albugo laibachii Nc14]
Length = 327
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/311 (59%), Positives = 240/311 (77%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
++ PWVEKYRPT + D+V N + + L +ARDGNM N+IL+GPPGTGKTTSIL LA L
Sbjct: 5 FETPWVEKYRPTSLDDVVANQETITCLKAMARDGNMTNIILSGPPGTGKTTSILCLARAL 64
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LGP + A++ELNASDDRGID VR KIK+FAQ+KV LPPG+HK+++LDEADS+T AQQA
Sbjct: 65 LGPALKHAILELNASDDRGIDTVRTKIKLFAQQKVNLPPGRHKLIILDEADSITGSAQQA 124
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIYS++TRFALACN S+KIIEPIQSRCAI+RF+RL +E IL RL+++ +EE++ Y
Sbjct: 125 LRRTMEIYSSTTRFALACNNSTKIIEPIQSRCAILRFTRLKNELILERLLIICREERLTY 184
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+GL AIIFTA+GDMR A+NNLQAT++GF + NVFK CDQPHP +K M+ +E
Sbjct: 185 QDDGLAAIIFTAEGDMRNAINNLQATHAGFGAITDANVFKACDQPHPGIIKKMLEECIES 244
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
A + L L GYS D+I T+FR+ K+ EM E+L+LEF+K+ G HM I DG+ S
Sbjct: 245 NLTAAETHLFGLVRAGYSTFDLIETIFRVCKSLEMDENLQLEFIKQIGVTHMCIADGLSS 304
Query: 311 YLQLCGLLAKL 321
LQ+ L+A++
Sbjct: 305 VLQIHALIARM 315
>gi|403217950|emb|CCK72442.1| hypothetical protein KNAG_0K00740 [Kazachstania naganishii CBS
8797]
Length = 319
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/317 (61%), Positives = 250/317 (78%), Gaps = 6/317 (1%)
Query: 8 SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
S ++PWVEKYRP K+ DIVGN D + RL I +DGNMP++I++G PG GKTTSI LA
Sbjct: 2 SLKLELPWVEKYRPHKLDDIVGNEDTIERLKEIVKDGNMPHMIISGLPGIGKTTSIQCLA 61
Query: 68 HELLGPNYR-EAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG 126
+E+LG AV+ELNASDDRGIDVVRN+IK FAQ K LPPGKHK+V+LDEADSMT+G
Sbjct: 62 NEMLGEKLLGSAVLELNASDDRGIDVVRNQIKHFAQVKCHLPPGKHKIVILDEADSMTSG 121
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQQALRRTME+YSN+TRFA ACN S+KIIEP+QSRCAI+R+S+L+DE++L RL+ +++ E
Sbjct: 122 AQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLNDEQVLKRLLQIIKLE 181
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
V Y +GLEAIIFTA+GDMRQA+NNLQ+T +G VN +NVF++ D PHPL VK M
Sbjct: 182 DVQYTNDGLEAIIFTAEGDMRQAINNLQSTAAGHGLVNGDNVFRIVDSPHPLIVKKM--- 238
Query: 247 VLEGKFDDACSGL-KQLYDLGYSPTDIITTLFRIIKN-YEMAEHLKLEFMKEAGFAHMRI 304
+L +FDDA + L K+L+D GYS DI+TT FR+ K+ +++ E +LE MKE G HMRI
Sbjct: 239 LLAEQFDDALAILKKELWDKGYSAVDIVTTCFRVTKSLFQVKEAKRLEMMKEIGITHMRI 298
Query: 305 CDGVGSYLQLCGLLAKL 321
+GVG+YLQL ++A++
Sbjct: 299 LEGVGTYLQLAAMVARI 315
>gi|289743537|gb|ADD20516.1| replication factor C subunit RFC2 [Glossina morsitans morsitans]
Length = 333
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 184/318 (57%), Positives = 247/318 (77%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
++ S +++PW+EKYRPTK +IVGN + V RL + A GN PN+I+AGPPG GKTT+I
Sbjct: 10 AAEESRRHNMPWIEKYRPTKFDEIVGNEETVCRLSVFATQGNAPNIIIAGPPGVGKTTTI 69
Query: 64 LALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM 123
LA LLG +++EAV+ELNAS++RGIDVVRNKIKMFAQ+KVTLP G+HK+V+LDEADSM
Sbjct: 70 QCLARILLGDSFKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPKGRHKIVILDEADSM 129
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T GAQQALRRTMEIY N+TRFALACN S KIIEPIQSRCA++RF++LSD ++L++++ V
Sbjct: 130 TEGAQQALRRTMEIYCNTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKVIEVC 189
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
Q E++ Y EGLEAI+FTA GDMRQALNNL++T GF ++ NVFKVCD+PHP+ +++M
Sbjct: 190 QREELQYDEEGLEAIVFTAQGDMRQALNNLESTSKGFGKISSVNVFKVCDEPHPMLIQDM 249
Query: 244 VRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
++ + A L +L+ LGY+ DII +FR+ K + E++KL F++E G HM+
Sbjct: 250 LQYCAQNDIHKAYKILAKLWYLGYAAEDIIGNIFRVCKRLTIDENMKLNFIREIGVTHMK 309
Query: 304 ICDGVGSYLQLCGLLAKL 321
+ +G+ + LQL LLAKL
Sbjct: 310 VIEGLNTLLQLTSLLAKL 327
>gi|344231186|gb|EGV63068.1| P-loop containing nucleoside triphosphate hydrolase protein
[Candida tenuis ATCC 10573]
Length = 325
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/321 (59%), Positives = 250/321 (77%), Gaps = 3/321 (0%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
+ S ++PWVEKYRP K+ +IVGN + V RL +IA DGNMP++I++G PG GKTTSI
Sbjct: 2 TKESPLTLELPWVEKYRPHKLDNIVGNEETVERLKLIANDGNMPHMIISGLPGIGKTTSI 61
Query: 64 LALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
LA ELLGP Y+ A +ELNASDDRGIDVVRN+IK FAQ K+ LPPG+HK+++LDEADS
Sbjct: 62 HCLALELLGPELYKSATLELNASDDRGIDVVRNRIKQFAQTKIQLPPGRHKIIILDEADS 121
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT GAQQALRRTMEIYSN+TRFA ACN SSKIIEP+QSRCAI+R+++L+D+++L+RL+ V
Sbjct: 122 MTPGAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLADDQVLTRLLEV 181
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
+ E V + EGL+A+IFTA+GDMRQA+NNLQ+T +GF VN NVFK+ DQPHPL ++
Sbjct: 182 CKLENVQFNTEGLQALIFTAEGDMRQAINNLQSTVAGFGMVNDVNVFKIVDQPHPLVIRK 241
Query: 243 MVRNVLEGK-FDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
M+R+ + D+A L L+ GYS DI+T+ F++ K ++ E +LE +KE GF
Sbjct: 242 MLRSCCSSQDIDNAIDLLDGLWVKGYSAIDIVTSAFKVAKTLPDINESKRLEVIKEIGFT 301
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMR+ +GV +YLQLCG+LAK+
Sbjct: 302 HMRVLEGVSTYLQLCGMLAKI 322
>gi|254564511|ref|XP_002489366.1| replication factor C subunit [Komagataella pastoris GS115]
gi|238029162|emb|CAY67082.1| Subunit of heteropentameric Replication factor C (RF-C)
[Komagataella pastoris GS115]
gi|328349795|emb|CCA36195.1| replication factor C subunit 2/4 [Komagataella pastoris CBS 7435]
Length = 324
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 187/313 (59%), Positives = 248/313 (79%), Gaps = 2/313 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + DIVGN D + RL A DGN+P++I++G PG GKTTS+ LAHELL
Sbjct: 8 ELPWVEKYRPKLLKDIVGNEDTIERLKAFAIDGNVPHMIISGLPGIGKTTSVHCLAHELL 67
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G Y +AV+ELNASDDRGI+VVRNKIK FA KKV+LPPG+HK+V+LDEADSMT GAQQAL
Sbjct: 68 GDMYYDAVLELNASDDRGIEVVRNKIKQFAHKKVSLPPGRHKIVILDEADSMTPGAQQAL 127
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTMEIYS +TRF ACN+S+KIIEP+QSRC+I+R+S+L DE++LSRL+ + +EE V Y
Sbjct: 128 RRTMEIYSGTTRFVFACNMSNKIIEPLQSRCSILRYSKLYDEQVLSRLLYICKEEGVKYT 187
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV-RNVLEG 250
+GLEA+IFTA+GDMRQA+NNLQ+T +G VN +NVF++ D PHPL V+ M+ + V +
Sbjct: 188 DDGLEALIFTAEGDMRQAINNLQSTVAGMGLVNGDNVFRIVDSPHPLVVRQMLFKAVKDS 247
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVG 309
D A L +L++ GYS DI++T F+++K+ E+ E +LE M+E GF HMR+ +GV
Sbjct: 248 DIDAAVDLLNRLWEKGYSAVDIVSTSFKVMKSVTEIPEADRLEVMREIGFTHMRVLEGVS 307
Query: 310 SYLQLCGLLAKLS 322
SYLQL G+LA+++
Sbjct: 308 SYLQLAGMLARIT 320
>gi|391337930|ref|XP_003743317.1| PREDICTED: replication factor C subunit 2-like [Metaseiulus
occidentalis]
Length = 322
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/313 (60%), Positives = 247/313 (78%), Gaps = 1/313 (0%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
A ++PWVEKYRP K +IVGN + VARL + +R GN+PN+IL GPPG GKTT+IL LA
Sbjct: 2 ANEVPWVEKYRPEKFTEIVGNEETVARLEVFSRQGNVPNIILCGPPGVGKTTTILCLARL 61
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
LLG ++REAV+ELNAS+DRGIDVVRNKIKMFAQ KVTLPPG+HK+++LDEADSMT GAQQ
Sbjct: 62 LLGSSFREAVLELNASNDRGIDVVRNKIKMFAQTKVTLPPGRHKIIILDEADSMTEGAQQ 121
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRRTME +S +TRFALACN S KIIEPIQSRCA++RF +LSD ++L++++ + ++E V
Sbjct: 122 ALRRTMENFSKTTRFALACNTSDKIIEPIQSRCAVIRFGKLSDAQVLAKIIDICRKENVS 181
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
Y +GLEA+++TA GDMRQA+ NLQ+T+ GF VN +NVFKVCD+PHPL +K M+ +
Sbjct: 182 YAEDGLEALVYTAQGDMRQAIGNLQSTHVGFGHVNGKNVFKVCDEPHPLIIKEMIEYCAK 241
Query: 250 GKFDDACSGLKQLYDLGYSPTDIITTLFRIIK-NYEMAEHLKLEFMKEAGFAHMRICDGV 308
G D+A + ++ LY LGY+ DI++ +FR+ K N + E+LKLEF+K G HM + G+
Sbjct: 242 GDIDEAYARMQTLYSLGYAAEDIVSNMFRVTKTNQTLPEYLKLEFIKHIGLTHMTVLQGL 301
Query: 309 GSYLQLCGLLAKL 321
GS LQL LLA L
Sbjct: 302 GSLLQLTALLADL 314
>gi|300123151|emb|CBK24424.2| unnamed protein product [Blastocystis hominis]
Length = 314
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 184/310 (59%), Positives = 242/310 (78%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
D PW+EK+RP + DIVGN + + R+ +I GN+P+++LAGPPGTGKTTS+L LAH +L
Sbjct: 2 DQPWIEKHRPQCLEDIVGNEETIKRMKVITETGNLPHILLAGPPGTGKTTSMLCLAHAML 61
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G Y+ AV+ELNASDDRGIDVVR KIK+FAQ KV+LP G HK+V+LDEADSMT AQQAL
Sbjct: 62 GDAYKTAVIELNASDDRGIDVVREKIKLFAQSKVSLPEGSHKLVLLDEADSMTPAAQQAL 121
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR ME+YS++TRFAL CN+SSKIIEPIQSRCAI+RF+RL D EIL RL+ + +EEK+ Y
Sbjct: 122 RRIMELYSSTTRFALVCNISSKIIEPIQSRCAILRFNRLKDTEILDRLLHICEEEKITYT 181
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+GL A++F ADGD+R A+N+LQAT+ GF VN+ENV KVCDQP P+ K +V+ +
Sbjct: 182 NDGLSALLFCADGDLRVAVNSLQATFYGFNVVNEENVIKVCDQPPPVVAKQIVQCCVSKD 241
Query: 252 FDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A SG+ QL++LGYS +DI+ T+F++ K+ ++ E LKLEF+KE G +RI +G +
Sbjct: 242 MVGARSGMTQLWNLGYSSSDIVGTIFKVTKDADLTEKLKLEFLKEIGICQLRIAEGATTL 301
Query: 312 LQLCGLLAKL 321
LQL GL+AK+
Sbjct: 302 LQLLGLVAKM 311
>gi|342320961|gb|EGU12899.1| Replication factor C subunit 4 [Rhodotorula glutinis ATCC 204091]
Length = 438
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/315 (60%), Positives = 251/315 (79%), Gaps = 11/315 (3%)
Query: 18 KYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILA---------GPPGTGKTTSILALAH 68
++RP + DIVGN + + RL +IARDGN P++I++ G PG GKTTSILALA
Sbjct: 104 QHRPKTLDDIVGNTETIERLKVIARDGNCPHIIISLVERWVRTQGAPGIGKTTSILALAR 163
Query: 69 ELLG-PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGA 127
LLG NY+E V+ELNASD+RGIDVVRN+IK FAQKKVTLP G+HK+++LDEADSMT GA
Sbjct: 164 ALLGDKNYKEGVLELNASDERGIDVVRNRIKTFAQKKVTLPLGRHKLIILDEADSMTTGA 223
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
QQALRRTME+YSN+TRFALACN S+KIIEPIQSRCAI+R++RLSD+E+L RL + + EK
Sbjct: 224 QQALRRTMELYSNTTRFALACNQSNKIIEPIQSRCAILRYARLSDKELLKRLKEICEIEK 283
Query: 188 VPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNV 247
VP+ +GL A+IFT++GDMRQA+NNLQ+T+SGF FV + VFKVCDQPHP+ V+ +V
Sbjct: 284 VPHNEQGLTALIFTSEGDMRQAINNLQSTFSGFGFVGADEVFKVCDQPHPVRVQQLVSAC 343
Query: 248 LEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHMRICD 306
++G D A GL +L+ GY+ D+++TLFR++K E ++E+++LEF++E GF HMRI +
Sbjct: 344 VKGDVDKAMDGLGELWGQGYAAVDVVSTLFRVVKGMEQLSEYVRLEFIREIGFTHMRILE 403
Query: 307 GVGSYLQLCGLLAKL 321
GV + +QL GL+A+L
Sbjct: 404 GVATVVQLGGLIARL 418
>gi|146423599|ref|XP_001487726.1| hypothetical protein PGUG_01103 [Meyerozyma guilliermondii ATCC
6260]
Length = 327
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/321 (59%), Positives = 247/321 (76%), Gaps = 6/321 (1%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
+ ++PWVEKYRP K+ DIVGN + V RL +IA+DGNMP++I++G PG GKTTSI LA+E
Sbjct: 7 SLELPWVEKYRPHKLDDIVGNEETVERLKLIAQDGNMPHMIISGLPGIGKTTSIHCLAYE 66
Query: 70 LLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQ 128
LLG Y +A +ELNASDDRGIDVVRNKIK FAQ K+ LPPG+HK+++LDEADSMT GAQ
Sbjct: 67 LLGKTMYDQATLELNASDDRGIDVVRNKIKQFAQTKILLPPGRHKIIILDEADSMTPGAQ 126
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKV 188
QALRRTMEIYSN+TRFA ACN SSKIIEP+QSRCAI+R+++L+D+++LSRL+ + + E V
Sbjct: 127 QALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLADDQVLSRLLEIAKAEDV 186
Query: 189 PYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR--- 245
Y +GL+A+IFTA+GDMRQA+NN+Q+T +GF FV+ NVFK+ DQPHPL +K ++
Sbjct: 187 KYNSQGLQALIFTAEGDMRQAINNMQSTVAGFGFVDDVNVFKIVDQPHPLVIKKILNSCC 246
Query: 246 -NVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLK-LEFMKEAGFAHMR 303
N +G D A L L++ GYS DI+T FR+ K LK L+ +KE G HMR
Sbjct: 247 SNDGKGDIDTALRLLDDLWNKGYSAIDIVTLTFRVAKTLPGISELKRLDIIKEVGLVHMR 306
Query: 304 ICDGVGSYLQLCGLLAKLSIV 324
+ +GV +YLQLCGL AK+ +
Sbjct: 307 VLEGVSTYLQLCGLFAKICTI 327
>gi|308198335|ref|XP_001386998.2| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
gi|149388978|gb|EAZ62975.2| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
Length = 325
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/313 (59%), Positives = 249/313 (79%), Gaps = 3/313 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP ++ D+VGN + + RL +IA+DGNMP++I++G PG GKTTSI LA+ELL
Sbjct: 10 ELPWVEKYRPRRLDDVVGNEETIERLKLIAKDGNMPHMIISGLPGIGKTTSIHCLAYELL 69
Query: 72 GPNY-REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
G +Y ++A +ELNASDDRGIDVVRN+IK FAQ K+ LPPG+HK+++LDEADSMT GAQQA
Sbjct: 70 GDDYYQQATLELNASDDRGIDVVRNRIKQFAQTKIKLPPGRHKIIILDEADSMTPGAQQA 129
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTMEIYSN+TRFA ACN SSKIIEP+QSRCAI+R+++L+D+++L+RL+ V E V +
Sbjct: 130 LRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLADDQVLTRLLEVSAAENVKF 189
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
EGL+A+IFTA+GDMRQA+NNLQ+T +GF FVN NVFK+ DQPHPL ++ ++ + +
Sbjct: 190 NSEGLQALIFTAEGDMRQAINNLQSTVAGFGFVNDINVFKIVDQPHPLVIQRILIHCTKD 249
Query: 251 K-FDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHMRICDGV 308
+ D A + L L+ GYS DI+T+ F++ K + E +LE +KE GF HMR+ +GV
Sbjct: 250 RDIDRALALLDDLWAKGYSAIDIVTSTFKVSKTLPGIGEQKRLELIKEVGFVHMRVLEGV 309
Query: 309 GSYLQLCGLLAKL 321
SYLQLCGL AK+
Sbjct: 310 SSYLQLCGLYAKI 322
>gi|242010739|ref|XP_002426116.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212510163|gb|EEB13378.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 338
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/319 (59%), Positives = 244/319 (76%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
SS + + PW+EKYRP D+VGN DA+ RL A GN+PN+++AGPPG GKTT+IL
Sbjct: 12 SSENIINAPWIEKYRPVTFKDVVGNDDAIRRLAAFAEVGNVPNILIAGPPGVGKTTTILC 71
Query: 66 LAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
LA LLGP+++EAV+ELNAS+DRGID VRNKIKMFAQ+KVTLP GKHK++VLDEADSMT
Sbjct: 72 LARILLGPSFKEAVLELNASNDRGIDTVRNKIKMFAQQKVTLPKGKHKIIVLDEADSMTD 131
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
GAQQALRRTME+YS +TRFA ACN SSKIIEP+QSRCA++RF++L DEEIL +L+ + +
Sbjct: 132 GAQQALRRTMEMYSQTTRFAFACNDSSKIIEPLQSRCAVLRFTKLKDEEILKKLLQICES 191
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E++ Y +GLEA+IF+A GD+RQALNNLQ+T++GF VN +NVFKVCD+PHP+ + M+
Sbjct: 192 EQISYTNDGLEAVIFSAQGDLRQALNNLQSTHNGFSHVNSDNVFKVCDEPHPVMIGEMLE 251
Query: 246 NVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
+ ++ F DA L L+ LGYS DII+T+FR K L L+F+KE H+RI
Sbjct: 252 HCMKANFQDAYKILNHLWKLGYSAEDIISTIFRGTKLILGQVDLVLKFLKEISLTHLRIV 311
Query: 306 DGVGSYLQLCGLLAKLSIV 324
+G S LQL LLAKL +
Sbjct: 312 EGTSSLLQLSSLLAKLCTI 330
>gi|430811901|emb|CCJ30656.1| unnamed protein product [Pneumocystis jirovecii]
Length = 345
Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/313 (60%), Positives = 244/313 (77%), Gaps = 7/313 (2%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
YD+PWVEKYRPT++ DIVGN + + RL +I+ +GNM G PG GKTTS++ LAH++
Sbjct: 27 YDLPWVEKYRPTRLEDIVGNTETIERLKVISVNGNM------GMPGIGKTTSVMCLAHQM 80
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LG + EAV+ELNASD+RGIDVVRN+IK F+QKKV LPPGKHK++VLDEADSMT GAQQA
Sbjct: 81 LGSAFGEAVLELNASDERGIDVVRNRIKGFSQKKVNLPPGKHKIIVLDEADSMTPGAQQA 140
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR MEIYSN+TRFA CN S+KIIEPIQSRCAI+R+SRL+D++IL RL+ + + E + Y
Sbjct: 141 LRRIMEIYSNTTRFAFICNQSNKIIEPIQSRCAILRYSRLTDQQILQRLLEICKIENIQY 200
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+GL A+IF+++GDMRQA+NNLQ+T GF FV ENVFKV DQP P +KN++ + +G
Sbjct: 201 NDDGLSALIFSSEGDMRQAINNLQSTVMGFGFVKGENVFKVVDQPSPGAIKNIIHSCEKG 260
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVG 309
+ A LK L +LGYS DIITT F+++K E+ E+ +LE++KE G HM I +GV
Sbjct: 261 DINTAIETLKDLLNLGYSVLDIITTFFKVVKMMDELPEYTRLEYIKEIGTTHMIILEGVQ 320
Query: 310 SYLQLCGLLAKLS 322
+ LQLCGLLA+L+
Sbjct: 321 TSLQLCGLLARLT 333
>gi|149235013|ref|XP_001523385.1| activator 1 37 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146452794|gb|EDK47050.1| activator 1 37 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 321
Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/317 (58%), Positives = 245/317 (77%), Gaps = 2/317 (0%)
Query: 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
S + D+PWVEKYRP + DIVGN + V RL IIA+DGN+P++I++G PG GKTTS+ L
Sbjct: 2 SHTTLDLPWVEKYRPRVLDDIVGNEETVERLKIIAKDGNIPHMIISGLPGIGKTTSVHCL 61
Query: 67 AHELLGPNY-REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
A+ELLG Y +A MELNASDDRGIDVVRNKIK FAQ K+ +PPG+ K+++LDEADSMT
Sbjct: 62 AYELLGKEYYHQATMELNASDDRGIDVVRNKIKQFAQTKILIPPGRTKIIILDEADSMTP 121
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
GAQQALRRTMEIYSN+TRF ACN S KIIEP+QSRCAI+R+++LSDEE+L+RL+ +++
Sbjct: 122 GAQQALRRTMEIYSNTTRFVFACNQSLKIIEPLQSRCAILRYNKLSDEEVLARLLEIIKA 181
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E V + EGL+A+IF+A+GDMRQA+NNLQ+T +GF FVN NVFK+ DQPHPL ++ ++
Sbjct: 182 EDVKFNNEGLQALIFSAEGDMRQAINNLQSTVAGFGFVNDVNVFKIVDQPHPLVIQKILT 241
Query: 246 NVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLK-LEFMKEAGFAHMRI 304
+ L+ D A L L+ GYS DI+T F++ K + LK LE +KE GF HMR+
Sbjct: 242 HSLKKDIDQALQLLDGLWLKGYSAIDIVTLSFKVAKTIPNVDELKRLEMIKEIGFTHMRV 301
Query: 305 CDGVGSYLQLCGLLAKL 321
+G+G+YLQL G+ AK+
Sbjct: 302 LEGLGTYLQLSGMYAKI 318
>gi|219127681|ref|XP_002184059.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404290|gb|EEC44237.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 349
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/314 (59%), Positives = 244/314 (77%), Gaps = 6/314 (1%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+A + S + Y +PWVEKYRP + D+VGN + V+RL I+R GN+PNLILAGPPGTGKT
Sbjct: 20 VAKAKKSMAGYQVPWVEKYRPRVLEDVVGNEETVSRLRAISRTGNLPNLILAGPPGTGKT 79
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TS+ ALA +LLG +Y++AV+ELNASD RGIDVVRN+IK FA KVTLPPG+HK+++LDEA
Sbjct: 80 TSVHALARQLLGASYKDAVLELNASDARGIDVVRNRIKSFAMNKVTLPPGRHKIIILDEA 139
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT+ AQQALRRTME+YSN+TRF LACNVS+KIIE IQSR AI+R+SRL++E++L+ L+
Sbjct: 140 DSMTSAAQQALRRTMELYSNTTRFCLACNVSTKIIEAIQSRAAILRYSRLANEQVLTCLL 199
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY---SGFRFVNQENVFKVCDQPHP 237
V Q E + Y + LEAI+FTA+GDMR ALNNLQA+Y +G ++Q +VFKVCDQPHP
Sbjct: 200 KVCQAESISYTNDALEAILFTAEGDMRHALNNLQASYFLTNG--IISQTSVFKVCDQPHP 257
Query: 238 LHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKE 296
V ++ + +G AC ++ L+ GYS DII T+F+++K + E+ E LKLE+++E
Sbjct: 258 KTVGQIISHCTKGDTKAACDQMQALWKSGYSTNDIIGTVFKVVKAHGELPEALKLEYLRE 317
Query: 297 AGFAHMRICDGVGS 310
GF MRI DGV S
Sbjct: 318 IGFTQMRISDGVNS 331
>gi|125977992|ref|XP_001353029.1| GA13416 [Drosophila pseudoobscura pseudoobscura]
gi|195172285|ref|XP_002026929.1| GL12737 [Drosophila persimilis]
gi|54641780|gb|EAL30530.1| GA13416 [Drosophila pseudoobscura pseudoobscura]
gi|194112697|gb|EDW34740.1| GL12737 [Drosophila persimilis]
Length = 331
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 182/296 (61%), Positives = 230/296 (77%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PW+EKYRP K +IVGN D VARL + A GN PN+I+AGPPG GKTT+I LA LLG
Sbjct: 16 LPWIEKYRPAKFNEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLG 75
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+Y+EAV+ELNAS++RGIDVVRNKIKMFAQ+KVTLP G+HK+V+LDEADSMT GAQQALR
Sbjct: 76 DSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPKGRHKIVILDEADSMTEGAQQALR 135
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTMEIYSN+TRFALACN S KIIEPIQSRCA++RF++LSD ++L++L+ V + E + Y
Sbjct: 136 RTMEIYSNTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVSKWESLSYDA 195
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
EGLEA++FTA GDMRQ LNNLQAT G+ + ENVFKVCD+PHP ++ M+++
Sbjct: 196 EGLEAVVFTAQGDMRQGLNNLQATAQGYGNITMENVFKVCDEPHPKLLEEMLQHCAVNDI 255
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGV 308
A L +L+ LGYSP DII +FR+ K + E +KL F++E G HM+I DG+
Sbjct: 256 HKAYKILAKLWSLGYSPEDIIGNIFRVCKRLNLDEQMKLNFIREIGITHMKIVDGI 311
>gi|357614163|gb|EHJ68945.1| replication factor C subunit 2 [Danaus plexippus]
Length = 349
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 179/309 (57%), Positives = 238/309 (77%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PW+EKYRP DIVGN D V+RL + AR GN PN+I+AGPPG GKTT+IL LA LLG
Sbjct: 32 LPWIEKYRPQTFTDIVGNEDTVSRLAVFARTGNAPNIIIAGPPGVGKTTTILCLARVLLG 91
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
P +++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLPPG+HK+V+LDEADSMT GAQQALR
Sbjct: 92 PAFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALR 151
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME+YS++TRFALA N S KIIEPIQSRCA++R+++LSD +IL++++ V ++E + Y
Sbjct: 152 RTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYTKLSDAQILAKVIEVCEKEDLSYTE 211
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
EG+ A++FTA GD+R ALNNLQ+T GF V+ +NVFKVCD+PHP+ VK M+
Sbjct: 212 EGVNAVVFTAQGDLRAALNNLQSTAQGFAHVSPDNVFKVCDEPHPMLVKTMLEACTRKDI 271
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
+A + +L LGY+ DI++ +FR+ K ++E ++L +K+ G MR DG+ S L
Sbjct: 272 YEAYKVIAKLCRLGYATEDILSNMFRVSKTLSVSEDVRLGLIKQIGLTQMRAADGLTSQL 331
Query: 313 QLCGLLAKL 321
QL LLA++
Sbjct: 332 QLAALLARM 340
>gi|330796823|ref|XP_003286464.1| replication factor C subunit [Dictyostelium purpureum]
gi|325083587|gb|EGC37036.1| replication factor C subunit [Dictyostelium purpureum]
Length = 498
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 181/296 (61%), Positives = 235/296 (79%), Gaps = 1/296 (0%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP ++ DIVGN + V+RL I++DGN+PN+I++GPPGTGKTTSIL LA LLG
Sbjct: 10 LPWVEKYRPIEIKDIVGNEETVSRLESISKDGNLPNIIISGPPGTGKTTSILCLARALLG 69
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
PNY+EAV ELNASDDR +DVVR+KIK FAQKKVTLPPG+HK+++LDE DSMT+GAQQALR
Sbjct: 70 PNYKEAVYELNASDDRTLDVVRDKIKSFAQKKVTLPPGRHKIIILDEVDSMTSGAQQALR 129
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R ME+YS++TRFA ACN S+KIIEPIQSRCA++RF++L++ +I +RL V+ EKVP+
Sbjct: 130 RIMELYSSTTRFAFACNQSTKIIEPIQSRCAVLRFTKLNNLQIAARLKEVMTIEKVPFTD 189
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GLEA+IFT++GDMRQALNNLQAT+SG VN ENV +VCDQPHP ++ ++ +
Sbjct: 190 DGLEALIFTSEGDMRQALNNLQATFSGLGLVNAENVNRVCDQPHPKIIRAIIEQCSKSNV 249
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHMRICDG 307
+ A LK L+D G+S DII+ LF + K + E+ KLEF+KE GF ++R G
Sbjct: 250 NVAYKHLKTLWDEGFSSIDIISALFSLTKASTILPEYQKLEFLKEIGFCNLRASTG 305
>gi|410984624|ref|XP_003998627.1| PREDICTED: replication factor C subunit 2 isoform 2 [Felis catus]
Length = 318
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/318 (57%), Positives = 236/318 (74%), Gaps = 34/318 (10%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
++ S+S Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKTTSI
Sbjct: 25 TAGSASHYELPWVEKYRPVKLSEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSI 84
Query: 64 LALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM 123
L LA LLGP +++AV+ELNAS+D SM
Sbjct: 85 LCLARALLGPAFKDAVLELNASND----------------------------------SM 110
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++LSD ++L+RLM V+
Sbjct: 111 TDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLMTVL 170
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
++EKV Y +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL VK M
Sbjct: 171 EQEKVQYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEM 230
Query: 244 VRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
+++ + D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+ HM+
Sbjct: 231 IQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMK 290
Query: 304 ICDGVGSYLQLCGLLAKL 321
I +GV S LQ+ GLLA+L
Sbjct: 291 IAEGVNSLLQMAGLLARL 308
>gi|308485377|ref|XP_003104887.1| CRE-RFC-2 protein [Caenorhabditis remanei]
gi|308257208|gb|EFP01161.1| CRE-RFC-2 protein [Caenorhabditis remanei]
Length = 329
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/312 (59%), Positives = 240/312 (76%), Gaps = 4/312 (1%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + DIVGN + V+RL +IA++GN+PN+IL+GPPG GKTTS+ ALA ELLG
Sbjct: 11 PWVEKYRPQVLSDIVGNENMVSRLEVIAKEGNVPNIILSGPPGIGKTTSVWALARELLGD 70
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
+EAV+ELNASD+RGIDVVRN+IK FAQ KVTLP G+HK+++LDEADSMT GAQQALRR
Sbjct: 71 KVKEAVLELNASDERGIDVVRNRIKTFAQTKVTLPEGRHKIIILDEADSMTDGAQQALRR 130
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
TME+YS +TRFALACN S KIIEPIQSRCA++R+++LS E+L R+ V + E V Y
Sbjct: 131 TMELYSKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVELLYRVKEVAKAESVNYDDG 190
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
GLEAI+FTA GDMRQALNNLQAT + + VN+ENV KVCD+PHP + M+ E KF
Sbjct: 191 GLEAILFTAQGDMRQALNNLQATVNAYERVNKENVLKVCDEPHPDLMIKMLLYCTEKKFF 250
Query: 254 DACSGLKQLYDLGYSPTDIITTLFRIIKNYEM----AEHLKLEFMKEAGFAHMRICDGVG 309
+A + + + LG+S DI++TLFR++K E+ +E L+++++KE G HMR+ G+
Sbjct: 251 EAAKIIHEFHRLGFSSDDILSTLFRVVKTVELSKNVSEQLRMQYIKEIGVCHMRVVQGLT 310
Query: 310 SYLQLCGLLAKL 321
S LQL L+A L
Sbjct: 311 SKLQLSRLVADL 322
>gi|268576228|ref|XP_002643094.1| C. briggsae CBR-RFC-2 protein [Caenorhabditis briggsae]
Length = 328
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/312 (58%), Positives = 241/312 (77%), Gaps = 4/312 (1%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + DIVGN + V RL +IA++GN+PN+IL+GPPG GKTTS+ ALA ELLG
Sbjct: 11 PWVEKYRPQILADIVGNENIVERLKVIAKEGNVPNIILSGPPGCGKTTSVWALARELLGD 70
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
++AV+ELNASD+RGIDVVRN+IK FAQ +VTLP G+HK+++LDEADSMT GAQQALRR
Sbjct: 71 KVKDAVLELNASDERGIDVVRNRIKTFAQTRVTLPEGRHKIIILDEADSMTEGAQQALRR 130
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
TMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+ E++SR++ V + E V +
Sbjct: 131 TMEIYSKTTRFALACNQSEKIIEPIQSRCALLRYTKLTAAELMSRVVEVAKAEDVNHDDG 190
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
GLEAI+FTA GDMRQALNNLQAT + + VN+ENV KVCD+PHP + M+ ++GKF
Sbjct: 191 GLEAILFTAQGDMRQALNNLQATVNAYEQVNKENVLKVCDEPHPDLMIKMLAYCVDGKFF 250
Query: 254 DACSGLKQLYDLGYSPTDIITTLFRIIKNYEMA----EHLKLEFMKEAGFAHMRICDGVG 309
+A + + + LG+S DI++TLFR++K E++ E L+ EF++E HMRI G+
Sbjct: 251 EASKIVHEFHRLGFSSDDIVSTLFRVVKTVELSKRVNEQLRQEFIREIAMCHMRIIQGLS 310
Query: 310 SYLQLCGLLAKL 321
S LQL L+A L
Sbjct: 311 SKLQLSRLVADL 322
>gi|341889869|gb|EGT45804.1| hypothetical protein CAEBREN_18241 [Caenorhabditis brenneri]
Length = 326
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 184/312 (58%), Positives = 237/312 (75%), Gaps = 4/312 (1%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + DIVGN + V RL +IA++GN+PN+IL+GPPG GKTTS+ A+A ELLG
Sbjct: 11 PWVEKYRPQLLSDIVGNENNVDRLKVIAKEGNLPNVILSGPPGCGKTTSVWAVARELLGD 70
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
++AV+ELNASD+RGIDVVRN+IK FAQ KVTLP G+HK+++LDEADSMT GAQQALRR
Sbjct: 71 KVKDAVLELNASDERGIDVVRNRIKTFAQTKVTLPEGRHKIIILDEADSMTEGAQQALRR 130
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
TME+YS +TRFALACN S K+IEPIQSRC ++R+ +LS E+L R+ + + E V Y
Sbjct: 131 TMELYSKTTRFALACNQSEKVIEPIQSRCCLLRYQKLSPVELLVRVKEIAKAENVNYDDG 190
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
GLEAI+FTA GDMRQALNNLQAT + + VN+ENV KVCD+PHP + M+ E KF
Sbjct: 191 GLEAILFTAQGDMRQALNNLQATVNAYELVNKENVLKVCDEPHPDLMVKMLMYCTEKKFF 250
Query: 254 DACSGLKQLYDLGYSPTDIITTLFRIIKNYEMA----EHLKLEFMKEAGFAHMRICDGVG 309
+AC + + Y LG+S DII+TLFR++K +++ E L+ E+++E HMRIC G+
Sbjct: 251 EACKIIHEFYRLGFSADDIISTLFRVVKTIDLSKKVTEALRAEYIREIACCHMRICQGLT 310
Query: 310 SYLQLCGLLAKL 321
S LQL L+A L
Sbjct: 311 SKLQLSRLVAGL 322
>gi|323451834|gb|EGB07710.1| hypothetical protein AURANDRAFT_59087 [Aureococcus anophagefferens]
Length = 313
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 183/311 (58%), Positives = 239/311 (76%), Gaps = 6/311 (1%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
+ PWVEK D+VGN + +++L + GNMPN+IL+GPPGTGKTTS+L LA E+L
Sbjct: 6 EAPWVEKS------DVVGNEETISKLRAVVAGGNMPNIILSGPPGTGKTTSMLCLAREML 59
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G NY+EAV+E+NASD+RGI VVR+KIKMFA+KKV LPPG HK+V+LDEADSMTA AQQA+
Sbjct: 60 GANYKEAVLEMNASDERGIMVVRDKIKMFAKKKVNLPPGAHKLVILDEADSMTAAAQQAM 119
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTME++S +TRFALACN SSKI EPIQSRCAI+RF+RLSD+E+L RL V E V
Sbjct: 120 RRTMELFSGTTRFALACNTSSKISEPIQSRCAILRFTRLSDKELLKRLTHVCGAEGVAAT 179
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
GLEA+IFTA+GDMR ALNNLQ+T+SGF V++++VFKVCDQPHP + ++ + +
Sbjct: 180 DGGLEALIFTAEGDMRNALNNLQSTHSGFGAVDEQSVFKVCDQPHPHVARKILDDCAKRD 239
Query: 252 FDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
D A +G+ L+ GY+ DI+ TLF++IK + M E +L+F+KE GFAH R+ DG +
Sbjct: 240 LDAAVAGIAGLHATGYAAVDIVATLFKVIKMHPMPEADQLKFIKEIGFAHTRVIDGCATL 299
Query: 312 LQLCGLLAKLS 322
QL GL+A+L+
Sbjct: 300 TQLTGLVARLT 310
>gi|301769427|ref|XP_002920131.1| PREDICTED: replication factor C subunit 2-like isoform 2
[Ailuropoda melanoleuca]
Length = 318
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 182/315 (57%), Positives = 234/315 (74%), Gaps = 34/315 (10%)
Query: 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
S+ Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKTTSIL L
Sbjct: 28 SAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCL 87
Query: 67 AHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG 126
A LLGP +++AV+ELNAS+D SMT G
Sbjct: 88 ARALLGPAFKDAVLELNASND----------------------------------SMTDG 113
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++LSD ++L+RL+ V+++E
Sbjct: 114 AQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQE 173
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
KVPY +GLEA+IFTA GDMRQALNN+Q+T+SGF F+N ENVFKVCD+PHPL VK MV++
Sbjct: 174 KVPYTDDGLEAVIFTAQGDMRQALNNVQSTFSGFGFINSENVFKVCDEPHPLLVKEMVQH 233
Query: 247 VLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICD 306
+ D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+ HM+I +
Sbjct: 234 CVNANVDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAE 293
Query: 307 GVGSYLQLCGLLAKL 321
GV S LQ+ GLLA+L
Sbjct: 294 GVNSLLQMAGLLARL 308
>gi|332255015|ref|XP_003276631.1| PREDICTED: replication factor C subunit 2 [Nomascus leucogenys]
Length = 322
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/322 (58%), Positives = 237/322 (73%), Gaps = 36/322 (11%)
Query: 2 ASSSSSSSA--YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
ASS + SA Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGK
Sbjct: 25 ASSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGK 84
Query: 60 TTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDE 119
TTSIL LA LLGP ++AV+ELNAS+D
Sbjct: 85 TTSILCLARALLGPALKDAVLELNASND-------------------------------- 112
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
SMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RL
Sbjct: 113 --SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDTQILTRL 170
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH 239
M V+++E+VPY +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL
Sbjct: 171 MNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLL 230
Query: 240 VKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGF 299
VK M+++ + D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+
Sbjct: 231 VKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNVFRVCKTFQMAEYLKLEFIKEIGY 290
Query: 300 AHMRICDGVGSYLQLCGLLAKL 321
HM+I +GV S LQ+ GLLA+L
Sbjct: 291 THMKIVEGVNSLLQMAGLLARL 312
>gi|402863245|ref|XP_003895941.1| PREDICTED: replication factor C subunit 2 isoform 2 [Papio anubis]
gi|384948614|gb|AFI37912.1| replication factor C subunit 2 isoform 2 [Macaca mulatta]
gi|387542034|gb|AFJ71644.1| replication factor C subunit 2 isoform 2 [Macaca mulatta]
Length = 318
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 183/320 (57%), Positives = 235/320 (73%), Gaps = 34/320 (10%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
+ + S+ Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKTT
Sbjct: 23 SKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTT 82
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA LLGP ++AV+ELNAS+D
Sbjct: 83 SILCLARALLGPALKDAVLELNASND---------------------------------- 108
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RLM
Sbjct: 109 SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLMN 168
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
V+++E+VPY +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL VK
Sbjct: 169 VIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVK 228
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAH 301
M+++ + D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+ H
Sbjct: 229 EMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTH 288
Query: 302 MRICDGVGSYLQLCGLLAKL 321
M+I +GV S LQ+ GLLA+L
Sbjct: 289 MKIAEGVNSLLQMAGLLARL 308
>gi|28882049|ref|NP_002905.2| replication factor C subunit 2 isoform 2 [Homo sapiens]
gi|18921085|gb|AAL82503.1|AF483622_1 replication factor C (activator 1) 2 (40kD) [Homo sapiens]
gi|12803933|gb|AAH02813.1| Replication factor C (activator 1) 2, 40kDa [Homo sapiens]
gi|30172693|gb|AAP22335.1| unknown [Homo sapiens]
gi|30582955|gb|AAP35707.1| replication factor C (activator 1) 2, 40kDa [Homo sapiens]
gi|60655817|gb|AAX32472.1| replication factor C 2 [synthetic construct]
gi|60655819|gb|AAX32473.1| replication factor C 2 [synthetic construct]
gi|119590011|gb|EAW69605.1| replication factor C (activator 1) 2, 40kDa, isoform CRA_a [Homo
sapiens]
gi|119590012|gb|EAW69606.1| replication factor C (activator 1) 2, 40kDa, isoform CRA_a [Homo
sapiens]
Length = 320
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/321 (56%), Positives = 235/321 (73%), Gaps = 34/321 (10%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+ + S+ Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKT
Sbjct: 24 FSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKT 83
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TSIL LA LLGP ++A++ELNAS+D
Sbjct: 84 TSILCLARALLGPALKDAMLELNASND--------------------------------- 110
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
SMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RLM
Sbjct: 111 -SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLM 169
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
V+++E+VPY +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL V
Sbjct: 170 NVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLV 229
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
K M+++ + D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+
Sbjct: 230 KEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYT 289
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HM+I +GV S LQ+ GLLA+L
Sbjct: 290 HMKIAEGVNSLLQMAGLLARL 310
>gi|30584413|gb|AAP36459.1| Homo sapiens replication factor C (activator 1) 2, 40kDa [synthetic
construct]
gi|60652727|gb|AAX29058.1| replication factor C 2 [synthetic construct]
Length = 321
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/321 (56%), Positives = 235/321 (73%), Gaps = 34/321 (10%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+ + S+ Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKT
Sbjct: 24 FSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKT 83
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TSIL LA LLGP ++A++ELNAS+D
Sbjct: 84 TSILCLARALLGPALKDAMLELNASND--------------------------------- 110
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
SMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RLM
Sbjct: 111 -SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLM 169
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
V+++E+VPY +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL V
Sbjct: 170 NVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLV 229
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
K M+++ + D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+
Sbjct: 230 KEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYT 289
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HM+I +GV S LQ+ GLLA+L
Sbjct: 290 HMKIAEGVNSLLQMAGLLARL 310
>gi|73957663|ref|XP_857196.1| PREDICTED: replication factor C subunit 2 isoform 3 [Canis lupus
familiaris]
Length = 318
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 184/322 (57%), Positives = 237/322 (73%), Gaps = 36/322 (11%)
Query: 2 ASSSSSSSA--YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
ASS + SA Y++PWVEKYRP K+ +IVGN D V+RL + A++GN+PN+I+AGPPGTGK
Sbjct: 21 ASSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGK 80
Query: 60 TTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDE 119
TTSIL LA LLGP ++AV+ELNAS+D
Sbjct: 81 TTSILCLARALLGPALKDAVLELNASND-------------------------------- 108
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
SMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++LSD ++L+RL
Sbjct: 109 --SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARL 166
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH 239
+ V+++EKVPY +GLEA+IFTA GDMRQALNN+Q+T+SGF F+N ENVFKVCD+PHPL
Sbjct: 167 LTVLEQEKVPYTDDGLEAVIFTAQGDMRQALNNVQSTFSGFGFINSENVFKVCDEPHPLL 226
Query: 240 VKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGF 299
VK M+++ + D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+
Sbjct: 227 VKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGY 286
Query: 300 AHMRICDGVGSYLQLCGLLAKL 321
HM+I +GV S LQ+ GLLA+L
Sbjct: 287 THMKIAEGVNSLLQMAGLLARL 308
>gi|452820599|gb|EME27639.1| replication factor C subunit 2/4 [Galdieria sulphuraria]
Length = 321
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/318 (58%), Positives = 235/318 (73%), Gaps = 1/318 (0%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + ++VGN V+RL + G++P+L+L+GPPG GKTT IL LA +LLG
Sbjct: 4 PWVEKYRPKTLDEVVGNPQVVSRLQAVVHGGSLPHLLLSGPPGCGKTTMILCLARQLLGE 63
Query: 74 NY-REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+ +AV+ELNASDDRGIDV+R+K+K FAQ+K++LP GKHK+V+LDEADSMT GAQQALR
Sbjct: 64 EWFSQAVLELNASDDRGIDVIRSKVKTFAQQKMSLPSGKHKIVILDEADSMTEGAQQALR 123
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTMEIY+ +TRFALACN SKIIEPIQSRCA+VR RL D EI RL V++ E V +
Sbjct: 124 RTMEIYATTTRFALACNTPSKIIEPIQSRCAVVRLRRLEDSEIAERLEQVLRLENVEWEN 183
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
GLEAI+FTADGDMR ALNN QAT GF ++QENVFKVCDQPHP VK ++ + LE
Sbjct: 184 SGLEAILFTADGDMRNALNNAQATVCGFGKLSQENVFKVCDQPHPNLVKQILESALEQNV 243
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
+ L L++ GYS DI+ TLFR+ +++EM EHL+LE MK G HM+I +G S +
Sbjct: 244 TKSNEILCSLWNKGYSALDIVQTLFRVARSHEMNEHLRLEVMKIVGKTHMKIMEGCASLI 303
Query: 313 QLCGLLAKLSIVRETAKA 330
QL L + LS V E+ +
Sbjct: 304 QLTALTSFLSEVSESTTS 321
>gi|114613997|ref|XP_001149670.1| PREDICTED: replication factor C subunit 2 isoform 1 [Pan
troglodytes]
gi|397489163|ref|XP_003815602.1| PREDICTED: replication factor C subunit 2 [Pan paniscus]
gi|410250174|gb|JAA13054.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
Length = 320
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/321 (56%), Positives = 235/321 (73%), Gaps = 34/321 (10%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+ + S+ Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKT
Sbjct: 24 FSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKT 83
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TSIL LA LLGP ++A++ELNAS+D
Sbjct: 84 TSILCLARALLGPALKDAMLELNASND--------------------------------- 110
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
SMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RLM
Sbjct: 111 -SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLM 169
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
V+++E+VPY +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL V
Sbjct: 170 NVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLV 229
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
K M+++ + D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+
Sbjct: 230 KEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYT 289
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HM+I +GV S LQ+ GLLA+L
Sbjct: 290 HMKIAEGVNSLLQMAGLLARL 310
>gi|262401171|gb|ACY66488.1| replication factor C 2 (40kD) isoform 2 [Scylla paramamosain]
Length = 332
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/315 (60%), Positives = 232/315 (73%), Gaps = 4/315 (1%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
AS S +S A PW+EKYRPT DIVGN + VARL + A+ GN+PN+I+AGP G GKTT
Sbjct: 22 ASPSETSHA---PWIEKYRPTTFPDIVGNEETVARLEVFAKQGNVPNIIIAGPLGVGKTT 78
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
+IL LA LLGP++REAVMELNAS+DRGIDVVRNKIKMFAQ+KVTLP GKHK+++LDEAD
Sbjct: 79 TILCLARALLGPSFREAVMELNASNDRGIDVVRNKIKMFAQQKVTLPKGKHKIIILDEAD 138
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT GAQQALRRTMEIYSN+TRFALACN S KIIEPIQSRCA++R+S+L+D +IL++L
Sbjct: 139 SMTDGAQQALRRTMEIYSNTTRFALACNSSEKIIEPIQSRCAMLRYSKLTDAQILNKLQH 198
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
V +E + Y +GLEAI+FTA GDMRQALNNLQ+T GF V+ ENVFKVCD+PHP+ VK
Sbjct: 199 VCSKEDLSYTDDGLEAILFTAQGDMRQALNNLQSTAQGFGHVSSENVFKVCDEPHPVMVK 258
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAH 301
M+++ + ++ P + L Y LKLEF+KE G+ H
Sbjct: 259 EMIQHCTKATLMKLIR-YWLIFGSWVMPLRTSSPLSLEYARYRYGRFLKLEFIKEIGYTH 317
Query: 302 MRICDGVGSYLQLCG 316
MRI G S LQL G
Sbjct: 318 MRIVQGTSSLLQLSG 332
>gi|296192223|ref|XP_002743971.1| PREDICTED: replication factor C subunit 2 isoform 2 [Callithrix
jacchus]
Length = 318
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/322 (57%), Positives = 236/322 (73%), Gaps = 36/322 (11%)
Query: 2 ASSSSSSSA--YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
ASS + S Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGK
Sbjct: 21 ASSKAPGSCGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGK 80
Query: 60 TTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDE 119
TTSIL LA LLGP ++AV+ELNAS+D
Sbjct: 81 TTSILCLARALLGPALKDAVLELNASND-------------------------------- 108
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
SMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RL
Sbjct: 109 --SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRL 166
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH 239
M V+++E+VP+ +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL
Sbjct: 167 MSVIEKERVPHTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLL 226
Query: 240 VKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGF 299
VK M+++ + D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+
Sbjct: 227 VKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGY 286
Query: 300 AHMRICDGVGSYLQLCGLLAKL 321
HM+I +GV S LQ+ GLLA+L
Sbjct: 287 THMKIAEGVNSLLQMAGLLARL 308
>gi|170589980|ref|XP_001899751.1| Activator 1 40 kDa subunit [Brugia malayi]
gi|158592877|gb|EDP31473.1| Activator 1 40 kDa subunit, putative [Brugia malayi]
Length = 326
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/317 (56%), Positives = 232/317 (73%), Gaps = 7/317 (2%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + ++VGN + RL A+ GN PN+I++GPPG GKTTS+ ALA E+LG
Sbjct: 6 PWVEKYRPKMLSEVVGNEFVIQRLAAFAKQGNTPNIIISGPPGCGKTTSMWALAREMLGD 65
Query: 74 NYREAVMELNASDDR-------GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG 126
+ A +ELNASDDR GIDVVRNKIK FAQ KVTLPPG+HK+++LDE DSMT G
Sbjct: 66 RLKNACLELNASDDREIFFKFSGIDVVRNKIKTFAQSKVTLPPGRHKIIILDEVDSMTEG 125
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQQALRRTMEIYS +TRF LACN S K+IEPIQSRCAI+RFS+LS+E+I+ RL+ + + E
Sbjct: 126 AQQALRRTMEIYSKTTRFTLACNQSGKVIEPIQSRCAILRFSKLSEEQIVKRLLQICEAE 185
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
KV Y G++A++FTA GDMRQALNNLQ T GF V +NVF+VCD+PHP V ++ +
Sbjct: 186 KVTYDDSGIDALVFTAQGDMRQALNNLQCTVVGFNNVTADNVFRVCDEPHPQMVMQIIEH 245
Query: 247 VLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICD 306
+ GK +A + LY +GYS DI+ + R+ K + E+LKLE++KE G H+RI +
Sbjct: 246 CVHGKVIEAGEIVHSLYRMGYSAEDILNNMVRVCKTLSIPEYLKLEYVKEIGLCHVRIVE 305
Query: 307 GVGSYLQLCGLLAKLSI 323
GV S LQL L+A++ +
Sbjct: 306 GVSSLLQLSALVARMCL 322
>gi|13435948|gb|AAH04812.1| Rfc2 protein, partial [Mus musculus]
Length = 272
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 174/262 (66%), Positives = 221/262 (84%)
Query: 60 TTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDE 119
TTSIL LA LLGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDE
Sbjct: 1 TTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDE 60
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
ADSMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D ++L+RL
Sbjct: 61 ADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRL 120
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH 239
M V+++EKVPY +GLEAIIFTA GDMRQALNNLQ+T+SGF ++N ENVFKVCD+PHPL
Sbjct: 121 MNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLL 180
Query: 240 VKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGF 299
VK M+++ ++ D+A L L+ LGYSP D+I +FR+ K + MAE+LKLEF+KE G+
Sbjct: 181 VKEMIQHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGY 240
Query: 300 AHMRICDGVGSYLQLCGLLAKL 321
HM++ +GV S LQ+ GLLA+L
Sbjct: 241 THMKVAEGVNSLLQMAGLLARL 262
>gi|17541988|ref|NP_500069.1| Protein RFC-2 [Caenorhabditis elegans]
gi|351021221|emb|CCD63484.1| Protein RFC-2 [Caenorhabditis elegans]
Length = 334
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/321 (56%), Positives = 240/321 (74%), Gaps = 4/321 (1%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
S S PWVEKYRP + DIVGN + V RL +I +GN+PN++L+GPPG GKTTS+
Sbjct: 2 SKSEKQQLAPWVEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVW 61
Query: 65 ALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
ALA ELLG +EAV+ELNASD+RGIDVVR++IK FAQ KVTLP G+HK+++LDEADSMT
Sbjct: 62 ALARELLGDKVKEAVLELNASDERGIDVVRHRIKTFAQTKVTLPEGRHKIIILDEADSMT 121
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
GAQQALRRTME+Y+ +TRFALACN S KIIEPIQSRCA++R+++LS ++L+R+ V +
Sbjct: 122 DGAQQALRRTMEMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLTRVKEVAK 181
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EKV Y GLEAI+FTA GDMRQALNNLQAT + + VN+ENV KVCD+PHP + M+
Sbjct: 182 AEKVNYDDGGLEAILFTAQGDMRQALNNLQATVNAYELVNKENVLKVCDEPHPDLMIKML 241
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEM----AEHLKLEFMKEAGFA 300
+ KF +A + + + LG+S DI++TLFR++K E+ +E L++E++++
Sbjct: 242 HYCTDRKFFEASKIIHEFHRLGFSSDDIVSTLFRVVKTVELSKNVSEQLRMEYIRQIAMC 301
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI G+ S LQL L+A L
Sbjct: 302 HMRIVQGLTSKLQLSRLIADL 322
>gi|426356547|ref|XP_004045626.1| PREDICTED: replication factor C subunit 2 [Gorilla gorilla gorilla]
Length = 320
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/321 (56%), Positives = 235/321 (73%), Gaps = 34/321 (10%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+ + S+ +++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKT
Sbjct: 24 FSKAPGSAGHHELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKT 83
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TSIL LA LLGP ++A++ELNAS+D
Sbjct: 84 TSILCLARALLGPALKDAMLELNASND--------------------------------- 110
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
SMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RLM
Sbjct: 111 -SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLM 169
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
V+++E+VPY +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL V
Sbjct: 170 NVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLV 229
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
K M+++ + D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+
Sbjct: 230 KEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYT 289
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HM+I +GV S LQ+ GLLA+L
Sbjct: 290 HMKIAEGVNSLLQMAGLLARL 310
>gi|71027617|ref|XP_763452.1| replication factor C subunit 4 [Theileria parva strain Muguga]
gi|68350405|gb|EAN31169.1| replication factor C subunit 4, putative [Theileria parva]
Length = 324
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 172/307 (56%), Positives = 232/307 (75%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRPT + DI+GN + RL IA++GNMPNL+L GPPGTGKTTS+L LA ELLG +
Sbjct: 8 WIEKYRPTTLDDIIGNPEITTRLQFIAKEGNMPNLLLCGPPGTGKTTSVLCLARELLGTH 67
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++ AV+ELNASDDRG+DVVR IK FA+K + LPP KHK+V+LDE DSMT AQQALRR
Sbjct: 68 FKSAVIELNASDDRGVDVVRESIKNFAKKSLVLPPNKHKIVILDEVDSMTEPAQQALRRI 127
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME+YS++TRFALACN S+KIIEPIQSRCA++R+S+L DE+IL RL+ + E + Y EG
Sbjct: 128 MELYSSTTRFALACNQSNKIIEPIQSRCAVIRYSKLQDEQILKRLVTICDMENLTYTDEG 187
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
+EA++F+ADGD+R+A+NNLQ +GF+ V ++NVFKVCD P P ++ M+ N L G +
Sbjct: 188 MEALLFSADGDLRRAVNNLQIVSAGFKVVTKDNVFKVCDIPSPDLIQKMLENCLNGNWRQ 247
Query: 255 ACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQL 314
A + QL +LG+SP DI+ T+ ++K + EH+ LE++K +HM + +G+ + LQL
Sbjct: 248 AHEKVDQLLELGHSPVDILVTMRNVLKTMDAPEHVLLEYIKSVALSHMTMVNGLSTQLQL 307
Query: 315 CGLLAKL 321
LLA L
Sbjct: 308 EKLLANL 314
>gi|260943850|ref|XP_002616223.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238849872|gb|EEQ39336.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 304
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/299 (59%), Positives = 236/299 (78%), Gaps = 3/299 (1%)
Query: 27 IVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN-YREAVMELNAS 85
++GN + + RL +I +DGNMP++I++G PG GKTTSI LA+ELLGP+ Y +A +ELNAS
Sbjct: 3 LLGNEETIERLKLIVQDGNMPHMIISGLPGIGKTTSIHCLAYELLGPDLYNQATLELNAS 62
Query: 86 DDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFA 145
DDRGIDVVRNKIK FAQ K++LPPG+HK+++LDEADSMT GAQQALRRTME+YSN+TRFA
Sbjct: 63 DDRGIDVVRNKIKQFAQTKISLPPGRHKIIILDEADSMTPGAQQALRRTMELYSNTTRFA 122
Query: 146 LACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGD 205
ACN SSKIIEP+QSRCAI+R+++L+D+++LSRL+ +++ E V EG++A+IFTA+GD
Sbjct: 123 FACNQSSKIIEPLQSRCAILRYNKLADDQVLSRLLEIIKAEDVKANSEGIKALIFTAEGD 182
Query: 206 MRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR-NVLEGKFDDACSGLKQLYD 264
MRQA+NNLQ+T +GF FVN NVFK+ DQPHPL +K ++ L D A L L++
Sbjct: 183 MRQAINNLQSTVAGFGFVNDTNVFKIVDQPHPLVIKKILDAAALHKDIDTAIDLLDTLWN 242
Query: 265 LGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLS 322
GYS DI+T+ F++ K + E +L+ +KE GF HMR+ +GV SYLQLCGL AKL+
Sbjct: 243 KGYSAIDIVTSSFKVAKTLPHVNESKRLDMIKEIGFVHMRVLEGVSSYLQLCGLFAKLA 301
>gi|338712629|ref|XP_003362742.1| PREDICTED: replication factor C subunit 2-like isoform 2 [Equus
caballus]
Length = 319
Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/319 (56%), Positives = 232/319 (72%), Gaps = 35/319 (10%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGI-IARDGNMPNLILAGPPGTGKTTS 62
+ S+ Y++PWVEKYRP K+ +IVGN D V+RL + + R+GN+PN+I+AGPPGTGKTTS
Sbjct: 25 APGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVSLCREGNVPNIIIAGPPGTGKTTS 84
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
IL LA LLGP ++AV+ELNAS+D S
Sbjct: 85 ILCLARALLGPALKDAVLELNASND----------------------------------S 110
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D ++L+RLM +
Sbjct: 111 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMTI 170
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
+++E VPY +GLEAI+FTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL VK
Sbjct: 171 IEKENVPYTDDGLEAIVFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKE 230
Query: 243 MVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHM 302
M+++ + D A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+ H+
Sbjct: 231 MIQHCVNADIDGAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHV 290
Query: 303 RICDGVGSYLQLCGLLAKL 321
+I DGV S LQ+ GLLA+L
Sbjct: 291 KIADGVNSLLQMAGLLARL 309
>gi|449016080|dbj|BAM79482.1| replication factor C subunit 2 [Cyanidioschyzon merolae strain 10D]
Length = 332
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/316 (56%), Positives = 230/316 (72%), Gaps = 8/316 (2%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PW+EKYRP + ++VGN V RL +A GN+P+L+L GPPG GKTT LALA + LG
Sbjct: 6 PWIEKYRPRTLSEVVGNQPVVERLRALALSGNVPHLLLVGPPGVGKTTVALALARDTLGD 65
Query: 74 NY-REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
++AV+ELNASD+RGIDVVRNKIKMF Q+ VTLPPG+HK+++LDEADSMT AQQALR
Sbjct: 66 ALIQQAVLELNASDERGIDVVRNKIKMFCQQHVTLPPGRHKLIILDEADSMTPAAQQALR 125
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R ME+YS++TRFALA NVSSKIIEPIQSRCA++RF RL DE + SRL+ V++EE VPY P
Sbjct: 126 RIMELYSSTTRFALAANVSSKIIEPIQSRCAVIRFRRLGDEAVRSRLVSVLEEEHVPYEP 185
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+G+E I+FTADGDMRQALNN QAT+ GF + E+V +VCD P P ++ + KF
Sbjct: 186 DGIETIVFTADGDMRQALNNAQATWFGFGVITTEHVLRVCDSPSPARLRRFLELCETQKF 245
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEM-------AEHLKLEFMKEAGFAHMRIC 305
+ A ++ ++ GY+ +D++ TLFR+ + M L+LEF++E G HMRI
Sbjct: 246 EQAVGEIEAIWRSGYAASDLVATLFRVARTQAMITEGGERGRDLRLEFLREIGLTHMRIT 305
Query: 306 DGVGSYLQLCGLLAKL 321
DG+ S LQL L +KL
Sbjct: 306 DGLSSLLQLTALASKL 321
>gi|403368050|gb|EJY83856.1| ATPase involved in DNA replication [Oxytricha trifallax]
Length = 328
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/316 (55%), Positives = 239/316 (75%), Gaps = 2/316 (0%)
Query: 8 SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
+ ++ P+VEKYRP + D+VGN A+ +L I + GNMPNLIL GPPGTGKT+S++ +A
Sbjct: 2 NDQFERPYVEKYRPETLDDVVGNKFAIDQLKAIVKFGNMPNLILVGPPGTGKTSSVMCMA 61
Query: 68 HELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGA 127
++L + +ELNASDDRGIDVVR+KIK FA +KVT+PPG HK+++LDE D+MT A
Sbjct: 62 RQMLKECVKTGTLELNASDDRGIDVVRDKIKGFAHQKVTVPPGMHKLIILDEGDAMTESA 121
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
QQALR M YS++TRFA+ACN S+KIIEPIQSRCAIVRF++L+DEEI+ RL +V+ E+
Sbjct: 122 QQALRMIMTEYSSTTRFAIACNDSAKIIEPIQSRCAIVRFTKLNDEEIVERLQIVMDREQ 181
Query: 188 VPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNV 247
+ Y P+G+EA++FTADGDMR ALNNLQAT++GF VN+ENVFKVCDQPHP + N++R
Sbjct: 182 IEYTPDGIEALVFTADGDMRYALNNLQATFAGFSVVNKENVFKVCDQPHPDLMANVLRAC 241
Query: 248 LEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE--MAEHLKLEFMKEAGFAHMRIC 305
L +F +AC+ + +++ GY+ DII TL +I++N + +E ++L ++KEA MR
Sbjct: 242 LHARFTEACALIDTVFNEGYNLIDIINTLTKIMQNMQDIRSEEMRLNYLKEASIIKMRTL 301
Query: 306 DGVGSYLQLCGLLAKL 321
+G S LQL G LA L
Sbjct: 302 EGNNSQLQLHGFLANL 317
>gi|209876285|ref|XP_002139585.1| replication factor C subunit 2 [Cryptosporidium muris RN66]
gi|209555191|gb|EEA05236.1| replication factor C subunit 2, putative [Cryptosporidium muris
RN66]
Length = 323
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 173/313 (55%), Positives = 237/313 (75%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + D+VGN + + RL ++A+ GNMPNL+L+GPPGTGKTTSI LA ELLGP
Sbjct: 6 WIEKYRPKILDDMVGNEEVLIRLKVLAKQGNMPNLLLSGPPGTGKTTSIHCLAAELLGPK 65
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+ AV+ELNASDDRGIDVVR++IK FA++K+ LP G+HK+++LDE DSMT AQQALRR
Sbjct: 66 FNRAVLELNASDDRGIDVVRDRIKSFAKEKIDLPFGRHKIIILDEVDSMTDTAQQALRRL 125
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME+YS+STRFALACN S+KIIEPIQSRCAI+R+S+LSDE+I RL +++ E +PY+ G
Sbjct: 126 MEVYSDSTRFALACNQSTKIIEPIQSRCAIIRYSKLSDEQIRERLFDIIKFENIPYIDSG 185
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
+E +IFTADGDMR A+NNLQATY+GF ++++NV K+ D P P +K+++ ++ +
Sbjct: 186 IETLIFTADGDMRIAINNLQATYNGFTLISKDNVLKISDIPSPEKIKSILDACVKSDWRL 245
Query: 255 ACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQL 314
A + ++LY GYSP DI+ T+ ++K Y++ E L LE++KE G H + DG + LQL
Sbjct: 246 AHNIAEELYSSGYSPLDIVITMRNVLKRYQLQETLILEYLKEVGRCHFVMLDGCSTELQL 305
Query: 315 CGLLAKLSIVRET 327
LL +L + T
Sbjct: 306 DKLLGQLCLASAT 318
>gi|312379835|gb|EFR25995.1| hypothetical protein AND_08190 [Anopheles darlingi]
Length = 296
Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 172/269 (63%), Positives = 220/269 (81%)
Query: 53 GPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH 112
GPPG GKTT+IL LA LLGPN+REAV+ELNAS++RGIDVVRNKIKMFAQ+KVTLP G+H
Sbjct: 20 GPPGVGKTTTILCLARILLGPNFREAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRH 79
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT GAQQALRRTMEIYSN+TRFALACN S KIIEPIQSRCA++RFS+LSD
Sbjct: 80 KIVILDEADSMTEGAQQALRRTMEIYSNTTRFALACNTSEKIIEPIQSRCAMLRFSKLSD 139
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVC 232
+IL++++ V Q+E + Y +GLEAI+FTA GDMRQALNNLQ+T +GF +N NVFKVC
Sbjct: 140 AQILAKVVEVCQKEVLTYDEDGLEAIVFTAQGDMRQALNNLQSTANGFGHINGANVFKVC 199
Query: 233 DQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLE 292
D+PHPL V++M+++ ++G A + +L+ LGY+ DII +FR+ + +M E LKL
Sbjct: 200 DEPHPLLVQDMLQHCVKGDIHKAYKIMSKLWRLGYAAEDIIGNVFRVCRRMDMNEKLKLY 259
Query: 293 FMKEAGFAHMRICDGVGSYLQLCGLLAKL 321
F++E G HM+I DG+ S LQ+ GLLA++
Sbjct: 260 FIREIGETHMKIVDGLNSLLQMTGLLARM 288
>gi|428671876|gb|EKX72791.1| replication factor C subunit 4, putative [Babesia equi]
Length = 324
Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 171/313 (54%), Positives = 231/313 (73%), Gaps = 1/313 (0%)
Query: 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH 68
S DI W+EKYRP + +I+GN + RL IA++GNMPNL+L GPPGTGKTTS+L LA
Sbjct: 3 SKIDI-WIEKYRPGSLDEIIGNPEITKRLQYIAKEGNMPNLLLCGPPGTGKTTSVLCLAR 61
Query: 69 ELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQ 128
E+LG ++ V+ELNASDDRG+DVVR IK FA+K + LPP KHK+V+LDE DSMT AQ
Sbjct: 62 EMLGAQFKSGVIELNASDDRGVDVVRESIKNFAKKSLILPPNKHKIVILDEVDSMTEAAQ 121
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKV 188
QALRR MEIYSN+TRFALACN S+KIIEPIQSRCA++RF++L DE++L RLM + + E +
Sbjct: 122 QALRRIMEIYSNTTRFALACNQSTKIIEPIQSRCAVIRFTKLKDEQVLQRLMDICKLEDL 181
Query: 189 PYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVL 248
Y +G+EA++F+ADGD+R+A+NNLQ +GF + +ENVFKVCD P P ++ M+ + L
Sbjct: 182 KYTNDGMEALLFSADGDLRRAVNNLQNVSAGFDLITKENVFKVCDIPSPDLIQKMLSDCL 241
Query: 249 EGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGV 308
G + A +L +LG+SP DII T+ ++K++ EH+ LE++K HM + +G+
Sbjct: 242 NGNWRMAHEKAAELLELGHSPLDIIITMRSVLKSFNAPEHVLLEYIKGVALTHMTMVNGL 301
Query: 309 GSYLQLCGLLAKL 321
+ LQL LLA L
Sbjct: 302 ITQLQLEKLLANL 314
>gi|154339736|ref|XP_001565825.1| putative replication factor C, subunit 4 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063143|emb|CAM45343.1| putative replication factor C, subunit 4 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 360
Score = 367 bits (941), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 183/350 (52%), Positives = 248/350 (70%), Gaps = 37/350 (10%)
Query: 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH 68
S PWVEKYRP V DIVGN +A++RL +IA++GN+PNL+L GPPGTGKTTS+L LA
Sbjct: 2 SIVSTPWVEKYRPQTVTDIVGNTEAISRLQVIAKEGNLPNLLLCGPPGTGKTTSMLCLAR 61
Query: 69 ELLGPN-----------------YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLP--- 108
+LL + ++AV+ELNASDDRG+DVVR KIK+FAQ K TLP
Sbjct: 62 DLLLQSTDASSAGTSLGGSTKDILKDAVLELNASDDRGLDVVREKIKLFAQTKKTLPKKF 121
Query: 109 ------PGK-------HKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKII 155
P + HK+V+LDEADSMT AQQALRRTME++S++TRFA ACN SSKII
Sbjct: 122 FSTGEGPTRDEHVVHLHKIVLLDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSSKII 181
Query: 156 EPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQA 215
EPIQSRCA+VRF +LSD +IL RL+ V+Q+E V Y +GLEA+++ A+GD+RQALN+LQA
Sbjct: 182 EPIQSRCAVVRFKKLSDADILKRLVYVIQQESVSYTDDGLEALLYLAEGDLRQALNSLQA 241
Query: 216 TYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK-FDDACSGLKQLYDLGYSPTDIIT 274
T++G+ VN +NVFKVCDQPHP+ V+N++ + + D+A + +L + GY+P D+I
Sbjct: 242 THTGYGLVNADNVFKVCDQPHPVLVENIITACITKRSIDEAHKEMNRLLNRGYAPVDVIA 301
Query: 275 TLFRIIK-NYEM--AEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKL 321
T F++++ N + +E +LE +K G MRI +GVG+ LQL +LA++
Sbjct: 302 TFFKVVQTNARLFRSELQQLEVLKIVGETTMRIAEGVGTSLQLAAMLARM 351
>gi|399216114|emb|CCF72802.1| unnamed protein product [Babesia microti strain RI]
Length = 325
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 171/315 (54%), Positives = 231/315 (73%), Gaps = 15/315 (4%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILA---------------GPPGTGK 59
W+EKYRPT + +IVGN + RL IA+DGNMPN+++A GPPGTGK
Sbjct: 10 WIEKYRPTTLSEIVGNKEVTKRLKFIAKDGNMPNMLIAVGTKLICRINDKLIHGPPGTGK 69
Query: 60 TTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDE 119
TTSIL LA+E+LGP ++AV+ELNASDDRG+DVVR+KIK FA++ TLP KHK+V+LDE
Sbjct: 70 TTSILCLANEMLGPMAKKAVLELNASDDRGVDVVRDKIKTFAKESTTLPKNKHKIVILDE 129
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
DSMT AQQ+LRR MEIYS++TRFALACN S+K+IEPIQSRCAI+R+S+L +E +L RL
Sbjct: 130 VDSMTEAAQQSLRRIMEIYSDTTRFALACNQSTKVIEPIQSRCAIIRYSKLDNEHMLKRL 189
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH 239
+ + + EKV Y +G+EA++F +DGD+R+ALNNLQ +GFR VN+ENVFKVCD P P
Sbjct: 190 IEICELEKVSYTQDGMEALLFVSDGDLRRALNNLQNVSAGFRNVNKENVFKVCDVPSPEK 249
Query: 240 VKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGF 299
+ +++ N L GK+ A + L +L G+S DI+ T+ ++K ++ EH+ LEF+K
Sbjct: 250 LNDLLTNCLNGKWRPAHNILHELLKCGHSSIDIVVTIRNLLKTFKAPEHVLLEFIKAVAI 309
Query: 300 AHMRICDGVGSYLQL 314
HM I +G+ + LQL
Sbjct: 310 THMIISNGLSTVLQL 324
>gi|422294054|gb|EKU21354.1| replication factor C subunit 2/4 [Nannochloropsis gaditana CCMP526]
Length = 456
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 199/412 (48%), Positives = 252/412 (61%), Gaps = 103/412 (25%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPP----------------- 55
+PWVEKYRP + D+VGN +A+ RL ++A+DGNMP+++LAGPP
Sbjct: 26 LPWVEKYRPVTLNDVVGNTEAIDRLKVVAQDGNMPHMLLAGPPVRLVARITTFSSSSHIL 85
Query: 56 --------GTGKTTSILALAHELLG------------PNYRE------------------ 77
GTGKT+SI+ L+ ELLG P R
Sbjct: 86 SASLPPLQGTGKTSSIVCLSRELLGEEHLGASSLLSLPYSRPCKVFTPAFPFSFVLPLAI 145
Query: 78 ----AVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
AV+ELNASD+RGIDV+R++IKMFAQKKV LPPG+HKVV+LDEADSMT+ AQQALRR
Sbjct: 146 STGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTSAAQQALRR 205
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDE-------------------- 173
TMEIYS++TRFALACN SSKIIEPIQSRCAI+RFSRL+DE
Sbjct: 206 TMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEILSLPVSLVKSSARTSRGKR 265
Query: 174 ----------------------EILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALN 211
EIL RL + + E V + +GLEA+IFTA+GDMR A+N
Sbjct: 266 VDSLPSRSSPAFPASPSPSIAQEILDRLRQICEAEHVGFSDDGLEAVIFTAEGDMRNAIN 325
Query: 212 NLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVL-EGKFDDACSGLKQLYDLGYSPT 270
NLQ+TYSGF +VNQ NVFKVCDQPHPL +K ++ G A L ++++LGYS +
Sbjct: 326 NLQSTYSGFGYVNQANVFKVCDQPHPLLMKEVLDLCAGSGDLKAAQEKLLRVWNLGYSAS 385
Query: 271 DIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKL 321
DI+ TLF++ +N+ M E KL F++E G HMRI +G+ S Q+ GLLAKL
Sbjct: 386 DIVGTLFKVCRNHGTMNEGTKLNFIREIGMVHMRIAEGLNSRTQILGLLAKL 437
>gi|401424285|ref|XP_003876628.1| putative replication factor C, subunit 4 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492871|emb|CBZ28150.1| putative replication factor C, subunit 4 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 360
Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 184/350 (52%), Positives = 247/350 (70%), Gaps = 37/350 (10%)
Query: 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH 68
S + PWVEKYRP V DIVGN +A++RL +IA++GN+PNL+L GPPGTGKTTS+L LA
Sbjct: 2 STVNTPWVEKYRPQTVADIVGNTEAISRLQVIAKEGNLPNLLLCGPPGTGKTTSMLCLAR 61
Query: 69 ELL-----------GPN------YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLP--- 108
+LL P ++AV+ELNASDDRG+DVVR KIK+FAQ K TLP
Sbjct: 62 DLLLQSTDAGSAGASPGGATKDILKDAVLELNASDDRGLDVVREKIKLFAQTKKTLPKKF 121
Query: 109 --PGK-----------HKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKII 155
G+ HK+V+LDEADSMT AQQALRRTME++S++TRFA ACN SSKII
Sbjct: 122 FSTGEGVAKDDHVVHLHKIVLLDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSSKII 181
Query: 156 EPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQA 215
EPIQSRCA+VRF +LSD +IL RL+ V+Q+E V Y +GLEA+++ A+GD+RQALN LQA
Sbjct: 182 EPIQSRCAVVRFKKLSDADILKRLVYVIQQENVSYTDDGLEALLYLAEGDLRQALNALQA 241
Query: 216 TYSGFRFVNQENVFKVCDQPHPLHVKNMVRN-VLEGKFDDACSGLKQLYDLGYSPTDIIT 274
T++G+ VN +NVFKVCDQPHPL V+N++ V++ ++A + +L + GY+P D+I
Sbjct: 242 THTGYGLVNADNVFKVCDQPHPLLVENVITACVMKRNIEEAHREMNRLLNRGYAPVDVIA 301
Query: 275 TLFRIIKNYE---MAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKL 321
T F++++ +E +LE +K G MRI +GVG+ LQL +LA++
Sbjct: 302 TFFKVVQTNARLFRSELQQLEVLKIVGETTMRIAEGVGTPLQLAAMLARM 351
>gi|156083805|ref|XP_001609386.1| replication factor C subunit 4 [Babesia bovis T2Bo]
gi|154796637|gb|EDO05818.1| replication factor C subunit 4 [Babesia bovis]
Length = 306
Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 166/300 (55%), Positives = 225/300 (75%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + D++GN + RL +IAR+GNMPNL+L GPPGTGKTTSIL LAHE+LG +
Sbjct: 6 WIEKYRPGILKDVIGNPEVTRRLEVIAREGNMPNLLLCGPPGTGKTTSILCLAHEMLGNH 65
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++ AV+ELNASDDRG+DVVR IK FA+K V LPP KHK+++LDE DSMT AQQALRR
Sbjct: 66 FKNAVLELNASDDRGVDVVRGAIKNFAKKSVVLPPNKHKIIILDEVDSMTEAAQQALRRI 125
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
MEIYS +TRFALACN S+KIIEPIQSRCA++R+ L DE IL+RL+ + +EE V Y +G
Sbjct: 126 MEIYSKTTRFALACNQSTKIIEPIQSRCAVIRYEPLQDEMILTRLIHICKEENVQYTNDG 185
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
+EA++FTA+GDMR+A+NNLQ SG+ + +NV+KVCD P P ++ ++++ L+G++
Sbjct: 186 MEALLFTANGDMRRAVNNLQNVSSGYNLITSQNVYKVCDVPSPELIRKLLQDCLDGQWRP 245
Query: 255 ACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQL 314
A + L LG+SP DI+ T+ ++K + EH+ EF+K +HM + G+ S LQL
Sbjct: 246 AHEKAEDLLALGHSPFDILMTVRSVLKTLKAPEHILCEFLKTISLSHMTMISGLSSPLQL 305
>gi|67540694|ref|XP_664121.1| hypothetical protein AN6517.2 [Aspergillus nidulans FGSC A4]
gi|40738667|gb|EAA57857.1| hypothetical protein AN6517.2 [Aspergillus nidulans FGSC A4]
gi|259480087|tpe|CBF70899.1| TPA: subunit of heteropentameric replication factor (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 289
Score = 363 bits (932), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 165/262 (62%), Positives = 216/262 (82%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A+++ + Y++PWVEKYRP + D+VGN + V RL IIA+DGNMP++I++G PG GKTT
Sbjct: 17 ANTAGAPPDYELPWVEKYRPVFLDDVVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTT 76
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA +LLG +Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+HK+V+LDEAD
Sbjct: 77 SILCLARQLLGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKIVILDEAD 136
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT+GAQQALRRTMEIYS++TRFA ACN S+KIIEP+QSRCAI+R++RL+D +I+ RL
Sbjct: 137 SMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQIVKRLKQ 196
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
V E+V Y +GL A++F+A+GDMRQALNNLQ+T+SGF V+ +NVF+V D PHP+ V+
Sbjct: 197 VCDAEQVKYTEDGLAALVFSAEGDMRQALNNLQSTWSGFGLVSGDNVFRVVDSPHPIKVQ 256
Query: 242 NMVRNVLEGKFDDACSGLKQLY 263
M++ EGK D A L +L+
Sbjct: 257 AMIKACWEGKVDSALETLNELW 278
>gi|389593215|ref|XP_003721861.1| putative replication factor C, subunit 4 [Leishmania major strain
Friedlin]
gi|321438363|emb|CBZ12115.1| putative replication factor C, subunit 4 [Leishmania major strain
Friedlin]
Length = 360
Score = 362 bits (930), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 184/350 (52%), Positives = 244/350 (69%), Gaps = 37/350 (10%)
Query: 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH 68
S D PWVEKYRP V DIVGN +A++RL +IA+ GN+PNL+L GPPGTGKTTS+L LA
Sbjct: 2 STVDTPWVEKYRPQTVVDIVGNTEAISRLQVIAKQGNLPNLLLCGPPGTGKTTSMLCLAR 61
Query: 69 ELL-----------GPN------YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLP--- 108
+LL P ++AV+ELNASDDRG+DVVR KIK+FAQ K TLP
Sbjct: 62 DLLLQSTDTGSAGASPGGAMKDILKDAVLELNASDDRGLDVVREKIKLFAQTKKTLPKKF 121
Query: 109 --PGK-----------HKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKII 155
G+ HK+V+LDEADSMT AQQALRRTME++S++TRFA ACN SS+II
Sbjct: 122 FSTGEGVAKDDHVVHLHKIVLLDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSSRII 181
Query: 156 EPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQA 215
EPIQSRCA+VRF +LSD +IL RL+ V+Q E V Y +GLEA+++ A+GD+RQALN LQA
Sbjct: 182 EPIQSRCAVVRFKKLSDADILKRLVYVIQHENVSYTDDGLEALLYLAEGDLRQALNALQA 241
Query: 216 TYSGFRFVNQENVFKVCDQPHPLHVKNMVRN-VLEGKFDDACSGLKQLYDLGYSPTDIIT 274
T++G+ VN +NVFKVCDQPHPL V+N++ V + ++A + +L + GY+P D+I
Sbjct: 242 THTGYGLVNADNVFKVCDQPHPLLVENVITACVTKRNIEEAHREMNRLLNRGYAPVDVIA 301
Query: 275 TLFRIIKNYE---MAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKL 321
T F++ + + +E +LE +K G MRI +GVG+ LQL +LA++
Sbjct: 302 TFFKVAQTHARLFRSELQQLEVLKIVGETTMRIAEGVGTPLQLAAMLARM 351
>gi|67622295|ref|XP_667804.1| replication factor c subunit 4 [Cryptosporidium hominis TU502]
gi|54658967|gb|EAL37571.1| replication factor c subunit 4 [Cryptosporidium hominis]
Length = 327
Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 169/310 (54%), Positives = 233/310 (75%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + ++VGN + + RL ++A+ GNMPNL+L+GPPGTGKTTSI LA E+LG
Sbjct: 6 WIEKYRPKILDEMVGNEEVLTRLKVLAKHGNMPNLLLSGPPGTGKTTSIHCLASEMLGSK 65
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
Y AV+ELNASDDRGIDVVR+KIK FA++K+ LP G+HK+V+LDE DSMT AQQALRR
Sbjct: 66 YGRAVLELNASDDRGIDVVRDKIKSFAREKIDLPEGRHKIVILDEVDSMTDSAQQALRRL 125
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME+YS STRFALACN S+KIIEPIQSRCAI+R+S+L+D +I RL +++ E +PYV G
Sbjct: 126 MEVYSESTRFALACNQSTKIIEPIQSRCAIIRYSKLTDAQIRKRLFEIIKMENIPYVDSG 185
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++ ++FTADGDMR +NNLQATY GF V+++NV KV D P P +K+++ + ++ +
Sbjct: 186 IDTLVFTADGDMRIVINNLQATYHGFSMVSRDNVLKVSDIPSPEKIKSILDSCVKCNWRL 245
Query: 255 ACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQL 314
A S +++L+ GYSP DI+ T+ ++K Y++ E LE++KE G H + DG + LQL
Sbjct: 246 AHSIVEELFIGGYSPLDIVITMRNVLKKYQLPERAILEYLKEVGRCHFVMLDGCATPLQL 305
Query: 315 CGLLAKLSIV 324
LL +L ++
Sbjct: 306 DKLLGQLCMI 315
>gi|66359084|ref|XP_626720.1| replication factor C like AAA+ ATpase [Cryptosporidium parvum Iowa
II]
gi|46228380|gb|EAK89279.1| replication factor C like AAA+ ATpase [Cryptosporidium parvum Iowa
II]
Length = 339
Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 169/310 (54%), Positives = 233/310 (75%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + ++VGN + + RL ++A+ GNMPNL+L+GPPGTGKTTSI LA E+LG
Sbjct: 18 WIEKYRPKILDEMVGNEEVLTRLKVLAKHGNMPNLLLSGPPGTGKTTSIHCLASEMLGSK 77
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
Y AV+ELNASDDRGIDVVR+KIK FA++K+ LP G+HK+V+LDE DSMT AQQALRR
Sbjct: 78 YGRAVLELNASDDRGIDVVRDKIKSFAREKIDLPEGRHKIVILDEVDSMTDSAQQALRRL 137
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME+YS STRFALACN S+KIIEPIQSRCAI+R+S+L+D +I RL +++ E +PYV G
Sbjct: 138 MEVYSESTRFALACNQSTKIIEPIQSRCAIIRYSKLTDAQIRKRLFEIIKMENIPYVDSG 197
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++ ++FTADGDMR +NNLQATY GF V+++NV KV D P P +K+++ + ++ +
Sbjct: 198 IDTLVFTADGDMRIVINNLQATYHGFSMVSRDNVLKVSDIPSPEKIKSILDSCVKCNWRL 257
Query: 255 ACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQL 314
A S +++L+ GYSP DI+ T+ ++K Y++ E LE++KE G H + DG + LQL
Sbjct: 258 AHSIVEELFIGGYSPLDIVITMRNVLKRYQLPERAILEYLKEVGRCHFVMLDGCATPLQL 317
Query: 315 CGLLAKLSIV 324
LL +L ++
Sbjct: 318 DKLLGQLCMI 327
>gi|339898595|ref|XP_003392626.1| putative replication factor C, subunit 4 [Leishmania infantum
JPCM5]
gi|321398414|emb|CBZ08802.1| putative replication factor C, subunit 4 [Leishmania infantum
JPCM5]
Length = 360
Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 183/350 (52%), Positives = 246/350 (70%), Gaps = 37/350 (10%)
Query: 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH 68
S + PWVEKYRP V DIVGN +A++RL +IA++GN+PNL+L GPPGTGKTTS+L LA
Sbjct: 2 STVNTPWVEKYRPQTVADIVGNTEAISRLQVIAKEGNLPNLLLCGPPGTGKTTSMLCLAR 61
Query: 69 ELL-----------GPN------YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLP--- 108
+LL P ++AV+ELNASDDRG+DVVR KIK+FAQ K TLP
Sbjct: 62 DLLLQSTDTGSAGASPGGATKDILKDAVLELNASDDRGLDVVREKIKLFAQTKKTLPRKF 121
Query: 109 --PGK-----------HKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKII 155
G+ HK+V+LDEADSMT AQQALRRTME++S++TRFA ACN SS+II
Sbjct: 122 FSTGEGVAKDDHVVHLHKIVLLDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSSRII 181
Query: 156 EPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQA 215
EPIQSRCA+VRF +LSD +IL RL+ V+Q+E V Y +GLEA+++ A+GD+RQALN LQA
Sbjct: 182 EPIQSRCAVVRFKKLSDADILKRLVYVIQQENVSYTDDGLEALLYLAEGDLRQALNALQA 241
Query: 216 TYSGFRFVNQENVFKVCDQPHPLHVKNMVRN-VLEGKFDDACSGLKQLYDLGYSPTDIIT 274
T++G+ VN +NVFKVCDQPHPL V+N++ V + ++A + +L + GY+P D+I
Sbjct: 242 THTGYGLVNADNVFKVCDQPHPLLVENVITACVTKRNIEEAHREMNRLLNRGYAPVDVIA 301
Query: 275 TLFRIIKNYE---MAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKL 321
T F++++ +E +LE +K G MRI +GVG+ LQL +LA++
Sbjct: 302 TFFKVVQTNARLFRSELQQLEVLKIVGETTMRIAEGVGTPLQLAAMLARM 351
>gi|323509483|dbj|BAJ77634.1| cgd3_1450 [Cryptosporidium parvum]
Length = 327
Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 169/310 (54%), Positives = 233/310 (75%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + ++VGN + + RL ++A+ GNMPNL+L+GPPGTGKTTSI LA E+LG
Sbjct: 6 WIEKYRPKILDEMVGNEEVLTRLKVLAKHGNMPNLLLSGPPGTGKTTSIHCLASEMLGSK 65
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
Y AV+ELNASDDRGIDVVR+KIK FA++K+ LP G+HK+V+LDE DSMT AQQALRR
Sbjct: 66 YGRAVLELNASDDRGIDVVRDKIKSFAREKIDLPEGRHKIVILDEVDSMTDSAQQALRRL 125
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME+YS STRFALACN S+KIIEPIQSRCAI+R+S+L+D +I RL +++ E +PYV G
Sbjct: 126 MEVYSESTRFALACNQSTKIIEPIQSRCAIIRYSKLTDAQIRKRLFEIIKMENIPYVDSG 185
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++ ++FTADGDMR +NNLQATY GF V+++NV KV D P P +K+++ + ++ +
Sbjct: 186 IDTLVFTADGDMRIVINNLQATYHGFSMVSRDNVLKVSDIPSPEKIKSILDSCVKCNWRL 245
Query: 255 ACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQL 314
A S +++L+ GYSP DI+ T+ ++K Y++ E LE++KE G H + DG + LQL
Sbjct: 246 AHSIVEELFIGGYSPLDIVITMRNVLKRYQLPERAILEYLKEVGRCHFVMLDGCATPLQL 305
Query: 315 CGLLAKLSIV 324
LL +L ++
Sbjct: 306 DKLLGQLCMI 315
>gi|403223028|dbj|BAM41159.1| replication factor [Theileria orientalis strain Shintoku]
Length = 331
Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 175/320 (54%), Positives = 231/320 (72%), Gaps = 8/320 (2%)
Query: 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH 68
S DI W+EKYRP + I+GN + RL IA++GNMPNL+L GPPGTGKTTS+L LA
Sbjct: 3 SKIDI-WIEKYRPNSLDQIIGNPEITKRLQFIAKEGNMPNLLLCGPPGTGKTTSVLCLAR 61
Query: 69 ELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQ 128
E+LG ++ AV+ELNASDDRG++VVR IK FA+K + LPP KHK+V+LDE DSMT AQ
Sbjct: 62 EMLGLQFKNAVIELNASDDRGVEVVRESIKNFAKKSLVLPPNKHKIVILDEVDSMTEAAQ 121
Query: 129 Q-------ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
Q ALRR MEIYSN+TRFALACN S+KIIEPIQSRCA++R+S+L D++IL RL+
Sbjct: 122 QWLTIQLKALRRIMEIYSNTTRFALACNQSTKIIEPIQSRCAVIRYSKLKDDQILKRLVD 181
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ E + Y EG+EA++F+ADGD+R+A+NNLQ +GF+ V +ENVFKVCD P P ++
Sbjct: 182 ICGMENLNYTNEGMEALLFSADGDLRRAVNNLQIVSAGFKVVTKENVFKVCDIPSPDLIQ 241
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAH 301
M+ + L G + A +L DLG+SP DII T+ ++K + EH+ LE++K AH
Sbjct: 242 KMLGDCLCGNWRSAHEKAVELLDLGHSPLDIIVTIRSVLKTLDAPEHVVLEYIKSVALAH 301
Query: 302 MRICDGVGSYLQLCGLLAKL 321
M + +G+ S LQL LLA L
Sbjct: 302 MVMVNGLTSQLQLEKLLANL 321
>gi|156064851|ref|XP_001598347.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|154691295|gb|EDN91033.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 333
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 160/261 (61%), Positives = 218/261 (83%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+ ++++ + Y++PWVEKYRP + D+VGN + + RL IIA+DGNMP++I++G PG GKT
Sbjct: 21 LKANTNGVTNYELPWVEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKT 80
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TS+L LA +LLG +Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLP G+HK+V+LDEA
Sbjct: 81 TSVLCLARQLLGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPAGRHKLVILDEA 140
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT+GAQQALRRTMEIYS++TRFA ACN S+KIIEP+QSRCAI+R++RL+D +++ RL+
Sbjct: 141 DSMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVKRLL 200
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+++ EKV Y +GL A++F+A+GDMRQA+NNLQ+T++GF FVN +NVFKV D PHP+ V
Sbjct: 201 QIIEAEKVEYSEDGLAALVFSAEGDMRQAINNLQSTFAGFGFVNGDNVFKVVDSPHPIKV 260
Query: 241 KNMVRNVLEGKFDDACSGLKQ 261
+ M++ EGK D A L +
Sbjct: 261 QAMIKACYEGKIDSALETLNE 281
>gi|407399789|gb|EKF28431.1| replication factor C, subunit 4, putative [Trypanosoma cruzi
marinkellei]
Length = 340
Score = 360 bits (925), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 179/332 (53%), Positives = 239/332 (71%), Gaps = 20/332 (6%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + DIVGN DAV+RL +I+++GN+PNL+L GPPGTGKTTS+L LA LL
Sbjct: 6 VPWVEKYRPKSMEDIVGNADAVSRLRVISKEGNLPNLLLCGPPGTGKTTSVLCLARTLLS 65
Query: 73 PN-------YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPP----------GKHKVV 115
+EAV+ELNASDDRG+DVVR KIK+FAQ K TLP HK+V
Sbjct: 66 DQDGGDTTALKEAVLELNASDDRGLDVVREKIKLFAQTKKTLPQKVNESSQQKMNLHKIV 125
Query: 116 VLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEI 175
+LDEADSMT AQQALRRTME++S++TRFA ACN S KIIEPIQSRCA+VRF +L+ +I
Sbjct: 126 ILDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSHKIIEPIQSRCAVVRFKKLTHADI 185
Query: 176 LSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQP 235
L RL ++Q+E V Y +GLEA+++ A+GD+R A+N LQAT+SG+ VN ENVFKVCDQP
Sbjct: 186 LKRLTYIIQQENVTYTDDGLEALLYLAEGDLRSAVNALQATHSGYGMVNAENVFKVCDQP 245
Query: 236 HPLHVKNMVRNVLEGK-FDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEM--AEHLKLE 292
HPL V++++ L+ K A L++L GY+ +D+I+T FR +N ++ E +L
Sbjct: 246 HPLLVESIMDGCLQKKDLPSAHKELQRLLGRGYAASDVISTFFRTAQNPKLFRNEQQQLA 305
Query: 293 FMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324
++ G MRI +GVG+ LQL +LA++++V
Sbjct: 306 VLRIIGETTMRIAEGVGTPLQLASMLARITMV 337
>gi|71654812|ref|XP_816018.1| replication factor C, subunit 4 [Trypanosoma cruzi strain CL
Brener]
gi|70881118|gb|EAN94167.1| replication factor C, subunit 4, putative [Trypanosoma cruzi]
Length = 340
Score = 360 bits (925), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 179/332 (53%), Positives = 239/332 (71%), Gaps = 20/332 (6%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + DIVGN DAV+RL +I+++GN+PNL+L GPPGTGKTTS+L LA LL
Sbjct: 6 VPWVEKYRPKSMEDIVGNADAVSRLRVISKEGNLPNLLLCGPPGTGKTTSVLCLARTLLS 65
Query: 73 PN-------YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPP----------GKHKVV 115
+EAV+ELNASDDRG+DVVR KIK+FAQ K TLP HK+V
Sbjct: 66 DQDGGDTTALKEAVLELNASDDRGLDVVREKIKLFAQTKKTLPQKVNESSQQKINLHKIV 125
Query: 116 VLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEI 175
+LDEADSMT AQQALRRTME++S++TRFA ACN S KIIEPIQSRCA+VRF +L+ +I
Sbjct: 126 ILDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSHKIIEPIQSRCAVVRFKKLTHADI 185
Query: 176 LSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQP 235
L RL ++Q+E V Y +GLEA+++ A+GD+R A+N LQAT+SG+ VN ENVFKVCDQP
Sbjct: 186 LKRLTYIIQQENVTYTDDGLEALLYLAEGDLRSAVNALQATHSGYGMVNAENVFKVCDQP 245
Query: 236 HPLHVKNMVRNVLEGK-FDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEM--AEHLKLE 292
HPL V++++ L+ K A L++L GY+ +D+I+T FR +N ++ E +L
Sbjct: 246 HPLLVESIMDGCLQKKDLPSAHKELQRLLGRGYAASDVISTFFRTAQNPKLFRNEQQQLA 305
Query: 293 FMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324
++ G MRI +GVG+ LQL +LA++++V
Sbjct: 306 VLRIIGETTMRIAEGVGTPLQLASMLARITMV 337
>gi|344240765|gb|EGV96868.1| Replication factor C subunit 2 [Cricetulus griseus]
Length = 293
Score = 360 bits (925), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 168/274 (61%), Positives = 215/274 (78%), Gaps = 22/274 (8%)
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD-------- 121
LLGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEAD
Sbjct: 10 LLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADRTEGMVGP 69
Query: 122 --------------SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRF 167
SMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+
Sbjct: 70 FPKTQYQPPSYACLSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRY 129
Query: 168 SRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQEN 227
++L+D ++L+RLM V+++EKVPY +GLEAIIFTA GDMRQALNNLQ+T+SGF ++N EN
Sbjct: 130 TKLTDAQVLTRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSEN 189
Query: 228 VFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAE 287
VFKVCD+PHPL VK M+++ ++ D+A L L+ LGYSP DII+ +FR+ K + MAE
Sbjct: 190 VFKVCDEPHPLLVKEMIQHCVDANIDEAYKILAHLWHLGYSPEDIISNIFRVCKTFPMAE 249
Query: 288 HLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKL 321
+LKLEF+KE G+ HM++ +GV S LQ+ GLLA+L
Sbjct: 250 YLKLEFIKEIGYTHMKVAEGVNSLLQMAGLLARL 283
>gi|407837802|gb|EKF99863.1| replication factor C, subunit 4, putative [Trypanosoma cruzi]
Length = 340
Score = 360 bits (924), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 180/336 (53%), Positives = 240/336 (71%), Gaps = 20/336 (5%)
Query: 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH 68
S + +PWVEKYRP + DIVGN DAV+RL +I+++GN+PNL+L GPPGTGKTTS+L LA
Sbjct: 2 SQHLVPWVEKYRPKSMEDIVGNADAVSRLRVISKEGNLPNLLLCGPPGTGKTTSVLCLAR 61
Query: 69 ELLGPN-------YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPP----------GK 111
LL +EAV+ELNASDDRG+DVVR KIK+FAQ K TLP
Sbjct: 62 TLLSDQDGGDTTALKEAVLELNASDDRGLDVVREKIKLFAQTKKTLPQKVNESSQQKINL 121
Query: 112 HKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLS 171
HK+V+LDEADSMT AQQALRRTME++S++TRFA ACN S KIIEPIQSRCA+VRF +L+
Sbjct: 122 HKIVILDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSHKIIEPIQSRCAVVRFKKLT 181
Query: 172 DEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKV 231
+IL RL ++Q+E V Y +GLEA+++ A+GD+R A+N LQAT SG+ VN ENVFKV
Sbjct: 182 HADILKRLTYIIQQENVTYTDDGLEALLYLAEGDLRSAVNALQATQSGYGMVNAENVFKV 241
Query: 232 CDQPHPLHVKNMVRNVLEGK-FDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEM--AEH 288
CDQPHPL V++++ L+ K A L++L GY+ +D+I+T FR +N ++ E
Sbjct: 242 CDQPHPLLVESIMDGCLQKKDLPSAHKELQRLLGRGYAASDVISTFFRTAQNPKLFRNEQ 301
Query: 289 LKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324
+L ++ G MRI +GVG+ LQL +LA++++V
Sbjct: 302 QQLTVLRIIGETTMRIAEGVGTPLQLASMLARITMV 337
>gi|345560703|gb|EGX43828.1| hypothetical protein AOL_s00215g564 [Arthrobotrys oligospora ATCC
24927]
Length = 306
Score = 360 bits (923), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 173/313 (55%), Positives = 227/313 (72%), Gaps = 37/313 (11%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
Y++PWVEKYRP + +IVGN + V RL IIA+DGNMP++I++G
Sbjct: 22 GYELPWVEKYRPRFLDEIVGNTETVERLKIIAKDGNMPHVIISG---------------- 65
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
IDVVRN+IK FAQKKVTLPPG+ K+V+LDEADSMT+GAQQ
Sbjct: 66 --------------------IDVVRNRIKGFAQKKVTLPPGRQKIVILDEADSMTSGAQQ 105
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRRTMEIYS++TRFA ACN S+KIIEP+QSRCAI+R++RL+D+++L RLM + E V
Sbjct: 106 ALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDQQLLKRLMEICAAEDVK 165
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
Y EGL A+IF+A+GDMRQA+NNLQ+T +GF FVN +NVFKV D PHP+ V+ M++ E
Sbjct: 166 YSDEGLAALIFSAEGDMRQAVNNLQSTVAGFGFVNGDNVFKVVDSPHPVAVQAMIKACYE 225
Query: 250 GKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHMRICDGV 308
GK D A L++L+D GYS D+I+T+FR+ K + ++EH KLEF+KE GF HMRI +GV
Sbjct: 226 GKIDQALETLRELWDKGYSAVDLISTMFRVTKTIDTLSEHSKLEFIKEIGFTHMRILEGV 285
Query: 309 GSYLQLCGLLAKL 321
G++LQL G +A+L
Sbjct: 286 GTHLQLQGCIARL 298
>gi|312077613|ref|XP_003141381.1| hypothetical protein LOAG_05796 [Loa loa]
gi|307763457|gb|EFO22691.1| hypothetical protein LOAG_05796 [Loa loa]
Length = 305
Score = 359 bits (922), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 168/282 (59%), Positives = 211/282 (74%)
Query: 26 DIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNAS 85
++VGN V RL A+ GN PN+I++GPPG GKTTS+ ALA E+LG + A +ELNAS
Sbjct: 4 EVVGNEFVVQRLAAFAKQGNTPNIIISGPPGCGKTTSMWALAREMLGDRLKSACLELNAS 63
Query: 86 DDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFA 145
DDRGIDVVRNKIK FAQ KVTLPPG+HKVV+LDE DSMT GAQQALRRTME+YS +TRFA
Sbjct: 64 DDRGIDVVRNKIKNFAQSKVTLPPGRHKVVILDEVDSMTEGAQQALRRTMEVYSKTTRFA 123
Query: 146 LACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGD 205
LACN S K+IEPIQSRCAI+RFS+LS+E+I+ RL+ V + E+V Y G++A++FTA GD
Sbjct: 124 LACNQSGKVIEPIQSRCAILRFSKLSEEQIVKRLLQVCEAERVTYDDSGIDALVFTAQGD 183
Query: 206 MRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDL 265
MRQALNNLQ T GF V +NVFKVCD+PHP V M+ + + G A L LY +
Sbjct: 184 MRQALNNLQCTVVGFNNVTADNVFKVCDEPHPQKVMQMIEHCIHGNVIKAGEILHSLYRM 243
Query: 266 GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDG 307
GYS DI+ + R+ K + E+LKLE++KE G H+R+ +G
Sbjct: 244 GYSSEDILNNMVRVCKTVNIPEYLKLEYVKEIGLCHVRVVEG 285
>gi|238494006|ref|XP_002378239.1| DNA replication factor C subunit Rfc4, putative [Aspergillus
flavus NRRL3357]
gi|220694889|gb|EED51232.1| DNA replication factor C subunit Rfc4, putative [Aspergillus flavus
NRRL3357]
Length = 295
Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 163/260 (62%), Positives = 214/260 (82%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
++ + S Y++PWVEKYRP + D+VGN + + RL IIA+DGNMP++I++G PG GKTTSI
Sbjct: 19 TAGAPSDYELPWVEKYRPVFLDDVVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSI 78
Query: 64 LALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM 123
L LA +LLG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPG+HK+V+LDEADSM
Sbjct: 79 LCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGRHKIVILDEADSM 138
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T GAQQALRRTMEIYS++TRFA ACN S+KIIEPIQSRCAI+R++RL+D +++ RL V
Sbjct: 139 TPGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPIQSRCAILRYARLTDGQVVKRLKQVC 198
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
EKV + +G+ A++F+A+GDMRQA+NNLQ+T+SGF FV+ +NVF+V D PHP+ V+ M
Sbjct: 199 DAEKVEHTEDGIAALVFSAEGDMRQAINNLQSTWSGFGFVSGDNVFRVVDSPHPIKVQAM 258
Query: 244 VRNVLEGKFDDACSGLKQLY 263
++ EGK D A L +L+
Sbjct: 259 IKACWEGKVDAALETLNELW 278
>gi|258569615|ref|XP_002543611.1| activator 1 40 kDa subunit [Uncinocarpus reesii 1704]
gi|237903881|gb|EEP78282.1| activator 1 40 kDa subunit [Uncinocarpus reesii 1704]
Length = 278
Score = 355 bits (911), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 161/262 (61%), Positives = 215/262 (82%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A+ + + Y++PWVEKYRP + D+VGN + + RL IIARDGNMP++I++G PG GKTT
Sbjct: 17 ANMAGAPPDYELPWVEKYRPVFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTT 76
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA ++LG Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLPPGKHK+V+LDEAD
Sbjct: 77 SILCLARQMLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPPGKHKLVILDEAD 136
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT+GAQQALRRTMEIYS +TRFA ACN S+KIIEP+QSRCAI+R+SRL+D +I+ RL
Sbjct: 137 SMTSGAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDTQIVERLDQ 196
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ + E V + +G+ A++F+A+GDMRQA+NNLQ+T++GF F++ +NVF+V D PHP+ V+
Sbjct: 197 ICKAEDVKHSDDGIAALVFSAEGDMRQAINNLQSTWAGFGFISGDNVFRVVDSPHPVKVQ 256
Query: 242 NMVRNVLEGKFDDACSGLKQLY 263
M++ EGK D A + L +L+
Sbjct: 257 AMIKACYEGKVDSALNTLTELW 278
>gi|342186045|emb|CCC95530.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 341
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 178/336 (52%), Positives = 238/336 (70%), Gaps = 21/336 (6%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + DIVGN DAVARL +IAR+GN+PNL+L GPPGTGKTTS+L LA LL
Sbjct: 6 VPWVEKYRPISMDDIVGNADAVARLQVIAREGNLPNLLLCGPPGTGKTTSMLCLARSLLS 65
Query: 73 PN---------YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPP----------GKHK 113
+ +EAV+ELNASDDRG+DVVR KIK+FAQ K TLP HK
Sbjct: 66 DSEGGGSSSNALKEAVLELNASDDRGLDVVREKIKLFAQTKKTLPQKVDDSGNRKINLHK 125
Query: 114 VVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDE 173
+V+LDEADSMT AQQALRRT+E++S++TRFA ACN S KIIEPIQSRCA+VRF +LS
Sbjct: 126 IVILDEADSMTPAAQQALRRTIELHSSTTRFAFACNNSHKIIEPIQSRCAVVRFKKLSHA 185
Query: 174 EILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCD 233
+IL RLM +++EE V Y +GLEA+++ A+GD+R A+N LQAT SG+ VN +NVFKVCD
Sbjct: 186 DILKRLMHIIREENVTYTEDGLEALLYLAEGDLRSAVNALQATCSGYSVVNADNVFKVCD 245
Query: 234 QPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEM--AEHLKL 291
PHP V+ ++ + L+ +A +++L GY+ +D+I+T FR +N ++ E +L
Sbjct: 246 LPHPHLVEGILTSCLKQDLAEAHKEMQRLLGRGYATSDVISTFFRAAQNVKLFRDEKQQL 305
Query: 292 EFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRET 327
E ++ G MRI +GVG+ LQL +L ++ + +T
Sbjct: 306 EVLRIIGEVTMRIAEGVGTPLQLASMLCRIIVATKT 341
>gi|340059150|emb|CCC53532.1| putative replication factor C, subunit 4 [Trypanosoma vivax Y486]
Length = 339
Score = 353 bits (907), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 175/330 (53%), Positives = 235/330 (71%), Gaps = 19/330 (5%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + D+VGN DAV RL +IAR+GN+PNL+L GPPGTGKTTS+L LA LL
Sbjct: 6 VPWVEKYRPVSLADVVGNADAVVRLHVIAREGNLPNLLLCGPPGTGKTTSMLCLARSLLS 65
Query: 73 PN-------YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPP----------GKHKVV 115
+EAV+ELNASDDRG+DVVR KIK+FAQ K TLP HK+V
Sbjct: 66 DQDGASNSALKEAVLELNASDDRGLDVVREKIKLFAQTKKTLPQKMDVTDQRRINLHKIV 125
Query: 116 VLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEI 175
+LDEADSMT AQQALRRT+E++S +TRFA ACN S KIIEPIQSRCA+VRF +L+ +I
Sbjct: 126 ILDEADSMTPAAQQALRRTIELHSGATRFAFACNNSHKIIEPIQSRCAVVRFRKLTHGDI 185
Query: 176 LSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQP 235
L RLM ++++E V Y +GLEA+++ ADGD+R A+N LQAT SG+ VN ENVFKVCDQP
Sbjct: 186 LKRLMHIIKQENVTYTDDGLEALLYLADGDLRSAVNALQATCSGYGVVNAENVFKVCDQP 245
Query: 236 HPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEF-- 293
H L V++++ + L+ A +++L GY+ +D+I+T FR+ +N ++ L+L+
Sbjct: 246 HALLVESIMSSCLKHDLAAAHKEMQRLLGRGYAVSDVISTFFRVAQNPKLFLDLQLQLAV 305
Query: 294 MKEAGFAHMRICDGVGSYLQLCGLLAKLSI 323
++ G MR+ +GVGS LQL +L ++ +
Sbjct: 306 LQIIGETTMRVAEGVGSPLQLASMLDRILV 335
>gi|303322344|ref|XP_003071165.1| activator 1 subunit, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240110864|gb|EER29020.1| activator 1 subunit, putative [Coccidioides posadasii C735 delta
SOWgp]
Length = 283
Score = 353 bits (905), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 163/267 (61%), Positives = 216/267 (80%), Gaps = 5/267 (1%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A+++ + Y++PWVEKYRP + D+VGN + + RL IIARDGNMP++I++G PG GKTT
Sbjct: 17 ANAAGAPPDYELPWVEKYRPVFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTT 76
Query: 62 SILALAHELLGPNYREAVMELNASDDR-----GIDVVRNKIKMFAQKKVTLPPGKHKVVV 116
SIL LA ++LG Y+EAV+ELNASD+R GIDVVRN+IK FAQKKVTLPPGKHK+V+
Sbjct: 77 SILCLARQMLGDVYKEAVLELNASDERVRFLAGIDVVRNRIKGFAQKKVTLPPGKHKLVI 136
Query: 117 LDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEIL 176
LDEADSMT+GAQQALRRTMEIYS +TRFA ACN S+KIIEP+QSRCAI+R+SRL+D +I+
Sbjct: 137 LDEADSMTSGAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQIV 196
Query: 177 SRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPH 236
RLM + + E V + +G+ A++F+A+GDMRQA+NNLQ+T++GF FV+ +NVF+V D PH
Sbjct: 197 KRLMQICEAEDVKHSDDGIAALVFSAEGDMRQAINNLQSTWAGFGFVSGDNVFRVVDSPH 256
Query: 237 PLHVKNMVRNVLEGKFDDACSGLKQLY 263
P+ V+ M++ EGK D A L +L+
Sbjct: 257 PVKVQAMIKACYEGKVDSALDTLTELW 283
>gi|402592394|gb|EJW86323.1| replication factor C subunit 2 [Wuchereria bancrofti]
Length = 307
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 165/284 (58%), Positives = 212/284 (74%), Gaps = 2/284 (0%)
Query: 26 DIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNAS 85
++VGN V RL A+ GN PN+I++GPPG GKTTS+ ALA E+LG + A +ELNAS
Sbjct: 4 EVVGNEFVVQRLAAFAKQGNTPNIIISGPPGCGKTTSMWALAREMLGGRLKSACLELNAS 63
Query: 86 DDR--GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTR 143
DDR GIDVVRNKIK FAQ KVTLPPG+HK+++LDE DSMT GAQQALRRTME+YS +TR
Sbjct: 64 DDREMGIDVVRNKIKNFAQSKVTLPPGRHKIIILDEVDSMTEGAQQALRRTMEVYSKTTR 123
Query: 144 FALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTAD 203
F LACN S K+IEPIQSRCAI+RFS+LS+E+I+ RL+ + + EKV Y G++A++FTA
Sbjct: 124 FTLACNQSGKVIEPIQSRCAILRFSKLSEEQIVKRLLQICEAEKVTYDDSGIDALVFTAQ 183
Query: 204 GDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLY 263
GDMRQALNNLQ T GF V +NVFKVCD+PHP V ++ + + GK +A + LY
Sbjct: 184 GDMRQALNNLQCTVVGFNNVTADNVFKVCDEPHPQMVMQIIEHCVHGKVMEAGEIVHSLY 243
Query: 264 DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDG 307
+GYS DI+ + R+ K + E+LKLE++KE G H+RI +G
Sbjct: 244 RMGYSAEDILNNMVRVCKTLSIPEYLKLEYVKEIGLCHIRIVEG 287
>gi|343418636|emb|CCD19659.1| replication factor C, subunit 4, putative [Trypanosoma vivax Y486]
Length = 339
Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 177/330 (53%), Positives = 237/330 (71%), Gaps = 19/330 (5%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + D+VGN DAVARL +IAR+GN+PNL+L GPPGTGKTTS+L LA LL
Sbjct: 6 VPWVEKYRPVSLADVVGNADAVARLRVIAREGNLPNLLLCGPPGTGKTTSMLCLARSLLS 65
Query: 73 -----PN--YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPP----------GKHKVV 115
PN +EAV+ELNAS DRG+DVVR KIK+FAQ K TL HK+V
Sbjct: 66 GQDVTPNSALKEAVLELNASYDRGLDVVREKIKLFAQTKKTLLQKMDVTDQRRINLHKIV 125
Query: 116 VLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEI 175
+LDEADSMT +Q+ALRRT+E++S +TRFA ACN S KIIEPIQSRCA+VRF +L+ +I
Sbjct: 126 ILDEADSMTPASQRALRRTIELHSGTTRFAFACNNSHKIIEPIQSRCAVVRFWKLTHGDI 185
Query: 176 LSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQP 235
L RLM ++++E V Y +GLEA+++ ADGD+R A+N LQAT SG+ VN +NVFKVCDQP
Sbjct: 186 LKRLMHIIKQENVTYTDDGLEALLYLADGDLRSAVNALQATCSGYGVVNAKNVFKVCDQP 245
Query: 236 HPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEM--AEHLKLEF 293
HPL V++++ + L+ A +++L GY+ +D+I+T FR+ +N + E L+L
Sbjct: 246 HPLLVESIMSSCLKHDLAAAHKEMQRLLGRGYAMSDVISTFFRVAQNPGLFRDEQLQLAV 305
Query: 294 MKEAGFAHMRICDGVGSYLQLCGLLAKLSI 323
++ G MRI +GVGS LQL +LA++ +
Sbjct: 306 LQIIGETTMRIAEGVGSPLQLAAMLARILV 335
>gi|85000801|ref|XP_955119.1| replication factor [Theileria annulata strain Ankara]
gi|65303265|emb|CAI75643.1| replication factor, putative [Theileria annulata]
Length = 299
Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 160/281 (56%), Positives = 216/281 (76%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP+ + +I+GN + RL IA++GNMPNL+L GPPGTGKTTS+L LA E+LG +
Sbjct: 8 WIEKYRPSTLEEIIGNPEITKRLQFIAKEGNMPNLLLCGPPGTGKTTSVLCLAREMLGSH 67
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++ AV+ELNASDDRG+DVVR IK FA+K + LP KHK+V+LDE DSMT AQQALRR
Sbjct: 68 FKSAVVELNASDDRGVDVVRENIKNFAKKSLILPANKHKIVILDEVDSMTEPAQQALRRI 127
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
MEIYS++TRFALACN S+KIIEPIQSRCA++R+S+L DE+IL RL+ + E + Y EG
Sbjct: 128 MEIYSSTTRFALACNQSNKIIEPIQSRCAVIRYSKLKDEQILKRLVTICDLENLTYTDEG 187
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
+EA++F+ADGD+R+A+NNLQ +GF+ V ++NVFKVCD P P ++ M+ N L G +
Sbjct: 188 MEALLFSADGDLRRAVNNLQIVSAGFKIVTKDNVFKVCDIPSPDLIQKMLENCLNGNWRL 247
Query: 255 ACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMK 295
A + QL +LG+SP DII T+ ++K + EH+ LE++K
Sbjct: 248 AHEKVNQLLELGHSPVDIIVTMRSLLKTMDAPEHVLLEYIK 288
>gi|323331653|gb|EGA73067.1| Rfc4p [Saccharomyces cerevisiae AWRI796]
Length = 264
Score = 350 bits (899), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 161/239 (67%), Positives = 200/239 (83%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
S + + +PWVEKYRP + DIVGN + + RL IA+DGNMP++I++G PG GKTTS+
Sbjct: 2 SKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHC 61
Query: 66 LAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
LAHELLG +Y + V+ELNASDDRGIDVVRN+IK FAQKK+ LPPGKHK+V+LDEADSMTA
Sbjct: 62 LAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA 121
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
GAQQALRRTME+YSNSTRFA ACN S+KIIEP+QSRCAI+R+S+LSDE++L RL+ +++
Sbjct: 122 GAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKL 181
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
E V Y +GLEAIIFTA+GDMRQA+NNLQ+T +G VN +NVFK+ D PHPL VK M+
Sbjct: 182 EDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKML 240
>gi|71756209|ref|XP_829019.1| replication factor C subunit 4 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70834405|gb|EAN79907.1| replication factor C, subunit 4, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261334959|emb|CBH17953.1| replication factor C, subunit 4, putative [Trypanosoma brucei
gambiense DAL972]
Length = 341
Score = 350 bits (899), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 175/336 (52%), Positives = 238/336 (70%), Gaps = 21/336 (6%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL- 71
+PWVEKYRP + DIVGN DAVARL +IAR+GN+PNL+L GPPGTGKTTS+L LA LL
Sbjct: 6 VPWVEKYRPMSMEDIVGNADAVARLQVIAREGNLPNLLLCGPPGTGKTTSMLCLARSLLS 65
Query: 72 -----GPN---YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPP----------GKHK 113
G N ++AV+ELNASDDRG+DVVR KIK+FAQ K TLP HK
Sbjct: 66 DPDGGGSNNNALKDAVLELNASDDRGLDVVREKIKLFAQTKKTLPQRVGDSNNRKINLHK 125
Query: 114 VVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDE 173
+V+LDEADSMT AQQALRRT+E++S++TRFA ACN S KIIEPIQSRCA+VRF +LS
Sbjct: 126 IVILDEADSMTPAAQQALRRTIELHSSTTRFAFACNNSHKIIEPIQSRCAVVRFRKLSHT 185
Query: 174 EILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCD 233
+IL RLM ++Q+E V Y +GLEA+++ ADGD+R A+N LQAT SG+ VN +NVFKVCD
Sbjct: 186 DILRRLMYIIQQENVAYTDDGLEALLYLADGDLRSAVNALQATCSGYSLVNADNVFKVCD 245
Query: 234 QPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEM--AEHLKL 291
PHP V+ ++ + ++ A +++L GY+ +D+I+T FR +N ++ E +L
Sbjct: 246 LPHPQLVEAILTSCVKQDLAAAHKEMQRLLGRGYATSDVISTFFRAAQNVKLFRDEKQQL 305
Query: 292 EFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRET 327
+ ++ G MR+ +GVG+ LQL ++ ++ + ++
Sbjct: 306 QVLRIIGEVTMRVAEGVGTPLQLASMVCRIIVATKS 341
>gi|281339983|gb|EFB15567.1| hypothetical protein PANDA_008825 [Ailuropoda melanoleuca]
Length = 244
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 157/234 (67%), Positives = 198/234 (84%)
Query: 88 RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALA 147
RGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT GAQQALRRTMEIYS +TRFALA
Sbjct: 1 RGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALA 60
Query: 148 CNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMR 207
CN S KIIEPIQSRCA++R+++LSD ++L+RL+ V+++EKVPY +GLEA+IFTA GDMR
Sbjct: 61 CNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKVPYTDDGLEAVIFTAQGDMR 120
Query: 208 QALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGY 267
QALNN+Q+T+SGF F+N ENVFKVCD+PHPL VK MV++ + D+A L L+ LGY
Sbjct: 121 QALNNVQSTFSGFGFINSENVFKVCDEPHPLLVKEMVQHCVNANVDEAYKILAHLWHLGY 180
Query: 268 SPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKL 321
SP DII +FR+ K ++MAE+LKLEF+KE G+ HM+I +GV S LQ+ GLLA+L
Sbjct: 181 SPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARL 234
>gi|294867359|ref|XP_002765080.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239864960|gb|EEQ97797.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 344
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 174/315 (55%), Positives = 230/315 (73%), Gaps = 6/315 (1%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + D+VGN A+ RL +A D +MPNL+L+GPPG GKTTS++ LA LLG
Sbjct: 15 LPWVEKYRPISLSDVVGNEPAMQRLRAMAEDRHMPNLLLSGPPGCGKTTSVMCLARALLG 74
Query: 73 PNY-REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGAQQ 129
+ + AV+ELNASDDRGIDVVRN+IK FAQ+K++LP G + K+V+LDEADSMT AQQ
Sbjct: 75 EDLVKTAVLELNASDDRGIDVVRNRIKTFAQQKISLPAGGCQQKIVILDEADSMTEAAQQ 134
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
A+RRTMEI+S +TRFALACN S+KIIEPIQSRCAIVRFSRL D +I +++ V E+V
Sbjct: 135 AMRRTMEIHSATTRFALACNQSTKIIEPIQSRCAIVRFSRLKDSDIEAQVKKVADMEEVQ 194
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
+GLEA+IFTA+GDMR ALNNLQ+T +GF V +ENVFKVCDQP P +K + +
Sbjct: 195 LRGDGLEALIFTAEGDMRAALNNLQSTATGFGIVTRENVFKVCDQPQPGELKQATLDCVN 254
Query: 250 GKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY---EMAEHLKLEFMKEAGFAHMRICD 306
+ A L ++ GYS DI+ TL R+I+N E+ E +K+EF++ +R+ +
Sbjct: 255 NDWCSAFDRLDRITAQGYSIGDIVGTLERVIRNLPPEELNEAIKIEFLQAIAMCRLRMSE 314
Query: 307 GVGSYLQLCGLLAKL 321
G+ S +QL GL+A +
Sbjct: 315 GLQSRVQLSGLVAAM 329
>gi|340059147|emb|CCC53529.1| putative replication factor C, subunit 4 [Trypanosoma vivax Y486]
Length = 339
Score = 347 bits (890), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 175/327 (53%), Positives = 230/327 (70%), Gaps = 19/327 (5%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWV KYRP + D+VGN DAVARL +IAR GN+PN + G GTGKTTS+L LA LL
Sbjct: 7 PWVGKYRPVSLADVVGNADAVARLHVIARKGNLPNHLHCGTRGTGKTTSMLCLARSLLSD 66
Query: 74 N-------YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPP----------GKHKVVV 116
+EAV+ELNASDDRG+DVVR KIK+FAQ K TLP HK+V+
Sbjct: 67 QDGASNSALKEAVLELNASDDRGLDVVREKIKLFAQTKKTLPQKMDVTDQRRINLHKIVI 126
Query: 117 LDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEIL 176
LDEADSMT AQQALRRT+E++S +TRFA ACN S KIIEPIQSRCA+VRF +L+ +IL
Sbjct: 127 LDEADSMTPAAQQALRRTIELHSGTTRFAFACNNSHKIIEPIQSRCAVVRFRKLTHGDIL 186
Query: 177 SRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPH 236
RLM ++++E V Y +GLEA+++ ADGD+R A+N LQAT SG+ VN ENVFKVCDQPH
Sbjct: 187 KRLMHIIKQENVTYTDDGLEALLYLADGDLRSAVNALQATCSGYGVVNAENVFKVCDQPH 246
Query: 237 PLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEM--AEHLKLEFM 294
PL V++++ + L+ A +++L GY+ +D+I+T FR+ +N ++ E L+L +
Sbjct: 247 PLLVESIMSSCLKHDLAAAHKEMQRLLGRGYAVSDVISTFFRVAQNPKLFRDEQLQLAVL 306
Query: 295 KEAGFAHMRICDGVGSYLQLCGLLAKL 321
+ G MRI +GVGS LQL +LA++
Sbjct: 307 QIIGETTMRIAEGVGSPLQLAAMLARI 333
>gi|294893510|ref|XP_002774508.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239879901|gb|EER06324.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 514
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 171/308 (55%), Positives = 224/308 (72%), Gaps = 6/308 (1%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + D+VGN A+ RL +A D +MPNL+L+GPPG GKTTS++ LA LLG
Sbjct: 15 LPWVEKYRPISLSDVVGNEPAMQRLRAMAEDRHMPNLLLSGPPGCGKTTSVMCLARALLG 74
Query: 73 PNY-REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGAQQ 129
+ + AV+ELNASDDRGIDVVRN+IK FAQ+K++LP G + K+V+LDEADSMT AQQ
Sbjct: 75 EDLVKTAVLELNASDDRGIDVVRNRIKTFAQQKISLPAGGCQQKIVILDEADSMTEAAQQ 134
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
A+RRTMEI+S +TRFALACN S+KIIEPIQSRCAIVRFSRL D +I +++ V E V
Sbjct: 135 AMRRTMEIHSATTRFALACNQSTKIIEPIQSRCAIVRFSRLKDSDIEAQVKKVADMEGVQ 194
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
+GLEA+IFTA+GDMR ALNNLQ+T +GF V +ENVFKVCDQP P +K + +
Sbjct: 195 LRGDGLEALIFTAEGDMRAALNNLQSTATGFGVVTRENVFKVCDQPQPGELKQATLDCVN 254
Query: 250 GKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY---EMAEHLKLEFMKEAGFAHMRICD 306
+ A L ++ GYS DI+ TL R+I+N E+ E +K+EF++ +R+ +
Sbjct: 255 NDWCSAFDRLDKITAQGYSIGDIVGTLERVIRNLPPEELNEAIKIEFLQAIAMCRLRMSE 314
Query: 307 GVGSYLQL 314
G+ S +QL
Sbjct: 315 GLQSRVQL 322
>gi|401400278|ref|XP_003880754.1| putative replication factor c subunit [Neospora caninum Liverpool]
gi|325115165|emb|CBZ50721.1| putative replication factor c subunit [Neospora caninum Liverpool]
Length = 347
Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 165/321 (51%), Positives = 222/321 (69%), Gaps = 2/321 (0%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
+S + D W+EKYRP + D+VGN + RL IIA++GNMP+L+LAGPPGTGKT+S+L
Sbjct: 21 ASPTTLDSIWIEKYRPETLDDVVGNDQVMRRLRIIAKEGNMPHLMLAGPPGTGKTSSVLC 80
Query: 66 LAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
L +LLG +R +ELNASD+R IDV+R K+K FA++K LPPG+HK+V+LDE D+MT
Sbjct: 81 LCKQLLGSRWRACTLELNASDERTIDVIREKVKHFAKEKRDLPPGRHKIVILDEVDAMTE 140
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQQALRR ME +S++TRFALACN S+ +IEP+QSRCAI+RF +L D +++ RL V
Sbjct: 141 AAQQALRRIMEQFSDTTRFALACNSSASVIEPLQSRCAILRFRKLDDAQLVRRLRQVCSM 200
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E V +G+EAI+F ADGDMR ALNNLQ+T S F VN+ENV KVCD P P V+ M+
Sbjct: 201 EAVQVTDDGMEAIVFCADGDMRSALNNLQSTVSAFGIVNRENVEKVCDNPPPEAVRAMLL 260
Query: 246 NVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY--EMAEHLKLEFMKEAGFAHMR 303
L GK+ A +L GY+P D++ T ++ + E EH+ LE++K G HM
Sbjct: 261 ECLAGKWRAAHDIATELLHRGYTPMDVVLTTRSVLSRFDNECKEHILLEYLKYVGLTHMT 320
Query: 304 ICDGVGSYLQLCGLLAKLSIV 324
+ G+ + LQL +LA L V
Sbjct: 321 MASGLSTPLQLDKMLANLCRV 341
>gi|118386221|ref|XP_001026231.1| ATPase, AAA family protein [Tetrahymena thermophila]
gi|89307998|gb|EAS05986.1| ATPase, AAA family protein [Tetrahymena thermophila SB210]
Length = 321
Score = 340 bits (873), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 156/315 (49%), Positives = 228/315 (72%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + ++ GN DA+ +L IA +GN+PN+IL GPPG GKT+S+L LA LL
Sbjct: 7 WLEKYRPRTLDEVQGNEDALIKLRTIAEEGNVPNMILVGPPGIGKTSSVLCLARTLLADV 66
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+ +E+NASD+RGIDVVR KIK FAQKKV L PG HK+++LDEADS+T GAQQALR
Sbjct: 67 FDSCALEMNASDERGIDVVREKIKSFAQKKVNLKPGLHKIIILDEADSLTEGAQQALRMI 126
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
+ ++++TRF L+CN SSK+I+ IQSRCAI+RF++L+DE+IL RL +V++E + G
Sbjct: 127 ISDFADTTRFVLSCNDSSKLIDAIQSRCAILRFTKLTDEQILRRLEEIVEKENIKIDKGG 186
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
EA++FT +GDMRQA+NNLQATY+ F+ VN+ENV KVCD P+ ++ ++ + G F
Sbjct: 187 KEALLFTCEGDMRQAINNLQATYTAFKLVNKENVLKVCDVPNVEVLQQVIAECVNGNFHA 246
Query: 255 ACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQL 314
A L L++ GY+ D++ L+++I+ +M + L+ EFM+E F M++ +G+ ++LQ+
Sbjct: 247 AQKKLYPLWEEGYTAYDLVNNLYKLIQTQDMDKQLQYEFMREMAFLKMKVLEGLPTFLQI 306
Query: 315 CGLLAKLSIVRETAK 329
G LAK+S + + K
Sbjct: 307 SGYLAKISSIANSKK 321
>gi|237843887|ref|XP_002371241.1| replication factor C subunit, putative [Toxoplasma gondii ME49]
gi|211968905|gb|EEB04101.1| replication factor C subunit, putative [Toxoplasma gondii ME49]
gi|221483809|gb|EEE22121.1| replication factor C subunit, putative [Toxoplasma gondii GT1]
gi|221504190|gb|EEE29865.1| replication factor C subunit, putative [Toxoplasma gondii VEG]
Length = 336
Score = 339 bits (870), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 162/311 (52%), Positives = 220/311 (70%), Gaps = 2/311 (0%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
+SS+ D W+EKYRP + D+VGN + RL IIAR+GNMP+L+LAGPPGTGKT+S+L
Sbjct: 25 TSSTTLDSIWIEKYRPETLDDVVGNDQVMRRLRIIAREGNMPHLMLAGPPGTGKTSSVLC 84
Query: 66 LAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
L +LLG +R +ELNASD+R IDV+R K+K FA++K LP G+HK+V+LDE D+MT
Sbjct: 85 LCKQLLGSRWRAYTLELNASDERTIDVIREKVKHFAKEKRDLPAGRHKIVILDEVDAMTE 144
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQQALRR ME +S++TRFALACN S+ +IEP+QSRCAI+RF +L D +++ RL V
Sbjct: 145 AAQQALRRIMEQFSDTTRFALACNSSASVIEPLQSRCAILRFRKLDDSQLVRRLRQVCAM 204
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E + +G+EAI+F ADGDMR ALNNLQ+T S F VN+ENV KVCD P P V++M+
Sbjct: 205 EALQVTDDGIEAIVFCADGDMRSALNNLQSTVSAFGVVNRENVEKVCDNPPPEAVRSMLM 264
Query: 246 NVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY--EMAEHLKLEFMKEAGFAHMR 303
L GK+ +A +L GY+P D++ T ++ + E EH+ LE++K G AHM
Sbjct: 265 ECLAGKWREAHDIAAELLRRGYTPMDVVLTTRSVLSRFENECKEHILLEYLKYVGLAHMT 324
Query: 304 ICDGVGSYLQL 314
+ G+ + LQL
Sbjct: 325 MSAGLSTPLQL 335
>gi|145552042|ref|XP_001461697.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124429533|emb|CAK94324.1| unnamed protein product [Paramecium tetraurelia]
Length = 384
Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 156/301 (51%), Positives = 222/301 (73%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++ W+EKYRP + ++ GN D V +L IA+ GN+PN+IL GPPG GKT+S+L LA ++L
Sbjct: 4 NLIWLEKYRPKTLDEVHGNSDIVDKLRAIAKMGNLPNIILVGPPGIGKTSSVLCLARQIL 63
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G + +E+V+ELNASDDRGI+ VR +IK FAQKKV L G+HK+V+LDEADS+T GAQQAL
Sbjct: 64 GDSIKESVLELNASDDRGIETVREQIKGFAQKKVNLQEGQHKIVILDEADSLTEGAQQAL 123
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
R + YS STRF L+CN S+K+I+ IQSRC I+RF+RL ++EI RL+ ++ +E V Y
Sbjct: 124 RMIISDYSTSTRFVLSCNDSTKLIDAIQSRCCILRFNRLGEKEIRDRLLEIISQESVTYT 183
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+GL+A+ FTA+GDMRQA+NNLQAT++GF VN+ENVFKVCD P+ +K ++ ++L+G+
Sbjct: 184 KDGLDALTFTAEGDMRQAINNLQATFTGFGLVNRENVFKVCDVPNVDDLKKILDHMLKGE 243
Query: 252 FDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
F A S +K ++D GY DI T ++I+N+ L+ EF+++ F RI +G+
Sbjct: 244 FQPAQSLMKSIFDNGYMAYDITNTFNKVIQNHNGDRDLQFEFLRQIAFLKARILEGIADV 303
Query: 312 L 312
L
Sbjct: 304 L 304
>gi|449479988|ref|XP_002192040.2| PREDICTED: replication factor C subunit 2-like [Taeniopygia
guttata]
Length = 409
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 157/218 (72%), Positives = 192/218 (88%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY 75
VEKYRP K+ +IVGN D V+RL + A++GN+PN+I+AGPPGTGKTTSIL LA LLGP
Sbjct: 191 VEKYRPMKLSEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 250
Query: 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTM 135
++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT GAQQALRRTM
Sbjct: 251 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTM 310
Query: 136 EIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGL 195
EIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RL+ +V++E V Y +GL
Sbjct: 311 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLKIVEKEDVAYTDDGL 370
Query: 196 EAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCD 233
EAIIFTA GDMRQALNNLQ+TYSGF F+N ENVFKV +
Sbjct: 371 EAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVSN 408
>gi|340508857|gb|EGR34473.1| replication factor C, activator 1, putative [Ichthyophthirius
multifiliis]
Length = 322
Score = 337 bits (863), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 153/315 (48%), Positives = 229/315 (72%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + DI GN DA+ +L I+++GN+PN+IL GPPG GKT+S+L LA LLG
Sbjct: 6 WLEKYRPKTLEDIQGNEDALIKLRTISKEGNIPNMILVGPPGIGKTSSVLCLAKTLLGDL 65
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+ELNASD+RGIDVVR+KIK FAQKK L PG HK+++LDEADS+T GAQQALR
Sbjct: 66 ISSCCLELNASDERGIDVVRDKIKSFAQKKANLRPGLHKIIILDEADSLTEGAQQALRMI 125
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
+ Y+++TRF L+CN SSK+I+ IQSRCAI+RF++L+D ++L+R+ +++ E +P+ G
Sbjct: 126 ISDYADTTRFMLSCNDSSKLIDAIQSRCAILRFTKLNDAQVLNRIQEIIKLENIPFDKSG 185
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
LEA++FT +GDMRQA+NNLQAT++ F F+N+ENVFKVCD P+ ++ + G F
Sbjct: 186 LEALLFTTEGDMRQAINNLQATFTAFGFLNRENVFKVCDVPNIEMLQQALLECSNGNFHS 245
Query: 255 ACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQL 314
A + L++ GY+ D++ L++++ N + ++L+ EF++E F M++ +G+ +++Q+
Sbjct: 246 AQLKVYPLWEEGYTAYDLVNNLYKLVFNLPIEKNLQYEFLREMAFLKMKVLEGLPTFVQI 305
Query: 315 CGLLAKLSIVRETAK 329
G LAK+S + K
Sbjct: 306 SGYLAKISQIANNMK 320
>gi|123399546|ref|XP_001301493.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121882680|gb|EAX88563.1| hypothetical protein TVAG_409150 [Trichomonas vaginalis G3]
Length = 324
Score = 330 bits (847), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 164/309 (53%), Positives = 211/309 (68%), Gaps = 1/309 (0%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + D+VGN + RL +A +GN+PNLIL GPPG GKTTS+LAL H+LLG
Sbjct: 6 PWVEKYRPRVLDDVVGNTAVIERLRALAAEGNIPNLILTGPPGCGKTTSLLALCHQLLGD 65
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
++AV+ELNASDDRGIDVVR IK FA++ V LP G+HKVV+LDE+DSMT AQQA+RR
Sbjct: 66 KEKDAVIELNASDDRGIDVVRKNIKEFAKRHVALPEGRHKVVLLDESDSMTDAAQQAMRR 125
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
ME Y+ +TRF ACN S K+IEPIQSRCAIVRFSR+ + EI +RLM + + E E
Sbjct: 126 IMENYTKTTRFVFACNQSEKVIEPIQSRCAIVRFSRVEENEIAARLMKICELEGFKPESE 185
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
G+ + ADGDMR A+N LQ+TY + V QENV D P+P + ++ + F
Sbjct: 186 GIATLARLADGDMRTAINGLQSTYVRYGLVTQENVLATVDIPNPTAIADIFTALSTDNFR 245
Query: 254 DACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHMRICDGVGSYL 312
+A L L G+SP+DI+ +LF ++ + + E LKL +KE G A MR+ G+ S L
Sbjct: 246 NALIILNGLEKRGHSPSDIVKSLFSFVRRTDTIQEKLKLNLLKEIGLAQMRVSQGMSSNL 305
Query: 313 QLCGLLAKL 321
QL GLLA L
Sbjct: 306 QLDGLLATL 314
>gi|343412942|emb|CCD21495.1| replication factor C, subunit 4, putative [Trypanosoma vivax Y486]
Length = 307
Score = 330 bits (847), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 162/284 (57%), Positives = 209/284 (73%), Gaps = 17/284 (5%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL- 71
+PWVEKY P + D+VGN DAVARL +IAR+GN+PNL+L GPPGTGKTTS+L LA L
Sbjct: 6 VPWVEKYLPVSLADVVGNADAVARLRVIAREGNLPNLLLCGPPGTGKTTSMLCLARSFLS 65
Query: 72 ----GPNY--REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPP----------GKHKVV 115
NY +EAV+ELNASDDRG+DVVR KIK+FAQ K TLP HK+V
Sbjct: 66 NQEGASNYALKEAVLELNASDDRGLDVVREKIKLFAQTKKTLPQKMDVTDQRRINLHKIV 125
Query: 116 VLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEI 175
+LDEADSMT AQQALRRT+E++S +TRFA ACN S KIIEPIQSRCA+VRF +L+ +I
Sbjct: 126 ILDEADSMTPAAQQALRRTIELHSGTTRFAFACNNSHKIIEPIQSRCAVVRFRKLTHGDI 185
Query: 176 LSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQP 235
L RLM ++++E V Y +GLEA+++ ADGD+R A+N LQAT SG+ N ENVFKVCDQP
Sbjct: 186 LRRLMHIIKQENVTYTDDGLEALLYLADGDLRSAVNALQATCSGYGVANAENVFKVCDQP 245
Query: 236 HPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRI 279
HPL V++++ + L+ A +++L GY+ +D+I+T FR+
Sbjct: 246 HPLLVESIMSSRLKHDLAAAHKEMQRLLWRGYAVSDVISTFFRV 289
>gi|413919223|gb|AFW59155.1| hypothetical protein ZEAMMB73_461194 [Zea mays]
Length = 188
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 153/177 (86%), Positives = 169/177 (95%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
YDIPWVEKYRP++V D+VGN DAVARL +IARDGNMPNLIL+GPPGTGKTTSILALAHEL
Sbjct: 11 YDIPWVEKYRPSRVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHEL 70
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LGP+YR+AV+ELNASDDRG+DVVRNKIKMFAQKKVTL PG+HK+V+LDEADSMT+GAQQA
Sbjct: 71 LGPSYRDAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILDEADSMTSGAQQA 130
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
LRRTMEIYSN+TRFALACN SSKIIEPIQSRCAIVRFSRLSD+EIL RLM+VV EK
Sbjct: 131 LRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAEK 187
>gi|3046711|emb|CAA06481.1| replication factor C/activator 1 subunit [Cicer arietinum]
Length = 166
Score = 327 bits (837), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 152/165 (92%), Positives = 160/165 (96%)
Query: 166 RFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQ 225
RFSRLSD+EIL RLMVVVQ EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF+FVNQ
Sbjct: 1 RFSRLSDQEILGRLMVVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQ 60
Query: 226 ENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEM 285
NVFKVCDQPHPLHVKNMVRNV+EG FD+ACSGLKQLYDLGYSPTDIITTLFRIIKNY+M
Sbjct: 61 ANVFKVCDQPHPLHVKNMVRNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDM 120
Query: 286 AEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRETAKA 330
AE+LKLEFMKE GFAHMRICDGVGSYLQ+CGLLAKLS+VRETAKA
Sbjct: 121 AEYLKLEFMKETGFAHMRICDGVGSYLQMCGLLAKLSLVRETAKA 165
>gi|149063103|gb|EDM13426.1| replication factor C (activator 1) 2, isoform CRA_c [Rattus
norvegicus]
Length = 233
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 145/223 (65%), Positives = 187/223 (83%)
Query: 99 MFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPI 158
MFAQ+KVTLP G+HK+++LDEADSMT GAQQALRRTMEIYS +TRFALACN S KIIEPI
Sbjct: 1 MFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPI 60
Query: 159 QSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS 218
QSRCA++R+++L+D ++LSRLM V+++EKVPY +GLEAIIFTA GDMRQALNNLQ+T+S
Sbjct: 61 QSRCAVLRYTKLTDAQVLSRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFS 120
Query: 219 GFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR 278
GF ++N ENVFKVCD+PHPL VK M+++ ++ D+A L L+ LGYSP D+I +FR
Sbjct: 121 GFGYINSENVFKVCDEPHPLLVKEMIQHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFR 180
Query: 279 IIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKL 321
+ K + MAE+LKLEF+KE G+ HM++ +GV S LQ+ GLLA+L
Sbjct: 181 VCKTFPMAEYLKLEFIKEIGYTHMKVAEGVNSLLQMAGLLARL 223
>gi|221059105|ref|XP_002260198.1| replication factor c subunit [Plasmodium knowlesi strain H]
gi|221061841|ref|XP_002262490.1| replication factor c subunit 4 [Plasmodium knowlesi strain H]
gi|193810271|emb|CAQ41465.1| replication factor c subunit, putative [Plasmodium knowlesi strain
H]
gi|193811640|emb|CAQ42368.1| replication factor c subunit 4, putative [Plasmodium knowlesi
strain H]
Length = 339
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 150/310 (48%), Positives = 221/310 (71%), Gaps = 1/310 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + D+VGN + L I GNMPNL+LAG PGTGKTTSIL LA E+LGP
Sbjct: 18 WIEKYRPENLDDVVGNPFVINTLKSIIVSGNMPNLLLAGAPGTGKTTSILCLASEMLGPQ 77
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++AV+ELNASDDRGI+V+R++IK FA++ ++LPPGKHK+++LDE DSMT AQQ+LRR
Sbjct: 78 AKKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQSLRRI 137
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME+YS++TRFALACN S KII+ +QSRCAI+R+ +LSD+++L R++ + Q E + Y +G
Sbjct: 138 MELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRIVKICQMENIKYTDDG 197
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
LE + F ADGD+R+A+N LQ+TY+G +N+ENV +CD P P ++N+++ + ++
Sbjct: 198 LETLTFIADGDLRKAVNCLQSTYAGLEVINKENVLHICDIPSPERIENLLKFCINSEWKK 257
Query: 255 ACSGLKQLYDLGYSPTDIITTLFRIIKNYEM-AEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + G++P D+ T +++ Y++ +E +++EF+K A + G+ S +Q
Sbjct: 258 AHDIAYDMIKEGHTPFDVALTSSNVLRRYDLGSESVQIEFLKIGAMACNTMASGLASVIQ 317
Query: 314 LCGLLAKLSI 323
L LLA I
Sbjct: 318 LDRLLADWCI 327
>gi|148687477|gb|EDL19424.1| replication factor C (activator 1) 2, isoform CRA_b [Mus musculus]
Length = 233
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 144/223 (64%), Positives = 187/223 (83%)
Query: 99 MFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPI 158
MFAQ+KVTLP G+HK+++LDEADSMT GAQQALRRTMEIYS +TRFALACN S KIIEPI
Sbjct: 1 MFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPI 60
Query: 159 QSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS 218
QSRCA++R+++L+D ++L+RLM V+++EKVPY +GLEAIIFTA GDMRQALNNLQ+T+S
Sbjct: 61 QSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFS 120
Query: 219 GFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR 278
GF ++N ENVFKVCD+PHPL VK M+++ ++ D+A L L+ LGYSP D+I +FR
Sbjct: 121 GFGYINSENVFKVCDEPHPLLVKEMIQHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFR 180
Query: 279 IIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKL 321
+ K + MAE+LKLEF+KE G+ HM++ +GV S LQ+ GLLA+L
Sbjct: 181 VCKTFPMAEYLKLEFIKEIGYTHMKVAEGVNSLLQMAGLLARL 223
>gi|221053736|ref|XP_002258242.1| replication factor c subunit [Plasmodium knowlesi strain H]
gi|193808075|emb|CAQ38779.1| replication factor c subunit, putative [Plasmodium knowlesi strain
H]
Length = 339
Score = 324 bits (831), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 221/310 (71%), Gaps = 1/310 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + D+VGN + L I GNMPNL+LAG PGTGKTTSIL LA E+LGP
Sbjct: 18 WIEKYRPENLDDVVGNPFVINTLKSIIVSGNMPNLLLAGAPGTGKTTSILCLASEMLGPQ 77
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++AV+ELNASDDRGI+V+R++IK FA++ ++LPPGKHK+++LDE DSMT AQQ+LRR
Sbjct: 78 AKKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQSLRRI 137
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME+YS++TRFALACN S KII+ +QSRCAI+R+ +LSD+++L R++ + + E + Y +G
Sbjct: 138 MELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRIVKICEMENIKYTDDG 197
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
LE + F ADGD+R+A+N LQ+TY+G +N+ENV +CD P P ++N+++ + ++
Sbjct: 198 LETLTFIADGDLRKAVNCLQSTYAGLEVINKENVLHICDIPSPERIENLLKFCINSEWKK 257
Query: 255 ACSGLKQLYDLGYSPTDIITTLFRIIKNYEM-AEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + G++P D+ T +++ Y++ +E +++EF+K A + G+ S +Q
Sbjct: 258 AHDIAYDMIKEGHTPFDVALTSSNVLRRYDLGSESVQIEFLKIGAMACNTMASGLASVIQ 317
Query: 314 LCGLLAKLSI 323
L LLA I
Sbjct: 318 LDRLLADWCI 327
>gi|70952026|ref|XP_745209.1| replication factor c subunit 4 [Plasmodium chabaudi chabaudi]
gi|56525460|emb|CAH78469.1| replication factor c subunit 4, putative [Plasmodium chabaudi
chabaudi]
Length = 336
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 147/317 (46%), Positives = 224/317 (70%), Gaps = 1/317 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + D+VGN + L I GNMPNL+LAG PGTGKTTSIL LA E+LG
Sbjct: 18 WIEKYRPEYLEDVVGNPFVINTLKSIIVSGNMPNLLLAGAPGTGKTTSILCLASEMLGSQ 77
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++AV+ELNASDDRGI+V+R++IK FA++ ++LPPG+HK+++LDE DSMT AQQ+LRR
Sbjct: 78 AKKAVLELNASDDRGINVIRDRIKSFAKEVISLPPGRHKIIILDEVDSMTTAAQQSLRRI 137
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME+YS++TRFALACN S KII+ +QSRCAI+R+ +L+D+++L R++ + + E + Y +G
Sbjct: 138 MELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLTDDQVLKRILKICEYENIKYTDDG 197
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
LE I F ADGD+R+A+N LQ+TY+G +N+ENV +CD P P ++N++++ + ++
Sbjct: 198 LETITFIADGDLRKAVNCLQSTYAGLEVINKENVLNICDIPSPERIENLLKHCISSEWRK 257
Query: 255 ACSGLKQLYDLGYSPTDIITTLFRIIKNYEM-AEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + G++P D+ T +++ Y++ +E +++EF+K A + G+ S +Q
Sbjct: 258 AHDIAYDMIKEGHTPFDVALTSSNVLRRYDLGSEAIQIEFLKIGAMACNTMASGLSSVIQ 317
Query: 314 LCGLLAKLSIVRETAKA 330
L L+A I +T +
Sbjct: 318 LDKLIADWCIAAKTLRG 334
>gi|389586506|dbj|GAB69235.1| replication factor C subunit 4 [Plasmodium cynomolgi strain B]
Length = 336
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 220/310 (70%), Gaps = 1/310 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + D+VGN + L I GNMPNL+LAG PGTGKTTSIL LA E+LG
Sbjct: 18 WIEKYRPECLDDVVGNPFVINTLKSIIVSGNMPNLLLAGAPGTGKTTSILCLASEMLGAQ 77
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++AV+ELNASDDRGI+V+R++IK FA++ ++LPPGKHK+++LDE DSMT AQQ+LRR
Sbjct: 78 AKKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQSLRRI 137
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME+YS++TRFALACN S KII+ +QSRCAI+R+ +LSD+++L R++ + Q E + Y +G
Sbjct: 138 MELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRIVKICQLENIKYTDDG 197
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
LE + F ADGD+R+A+N LQ+TY+G +N+ENV +CD P P ++N+++ + ++
Sbjct: 198 LETLTFIADGDLRKAVNCLQSTYAGLEVINKENVLNICDIPSPERIENLLKFCINSEWKK 257
Query: 255 ACSGLKQLYDLGYSPTDIITTLFRIIKNYEM-AEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + G++P D+ T +++ Y++ +E +++EF+K A + G+ S +Q
Sbjct: 258 AHDIAYDMIKEGHTPFDVALTSSNVLRRYDLGSEAVQIEFLKIGAMACNTMASGLASVIQ 317
Query: 314 LCGLLAKLSI 323
L LLA I
Sbjct: 318 LDKLLADWCI 327
>gi|156095817|ref|XP_001613943.1| replication factor C subunit 4 [Plasmodium vivax Sal-1]
gi|148802817|gb|EDL44216.1| replication factor C subunit 4, putative [Plasmodium vivax]
Length = 336
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 220/310 (70%), Gaps = 1/310 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + D+VGN + L I GNMPNL+LAG PGTGKTTSIL LA E+LG
Sbjct: 18 WIEKYRPEYLDDVVGNPFVINTLKSIIVSGNMPNLLLAGAPGTGKTTSILCLASEMLGAQ 77
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++AV+ELNASDDRGI+V+R++IK FA++ ++LPPGKHK+++LDE DSMT AQQ+LRR
Sbjct: 78 AKKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQSLRRI 137
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME+YS++TRFALACN S KII+ +QSRCAI+R+ +LSD+++L R++ + Q E + Y +G
Sbjct: 138 MELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRIVKICQLENIKYTDDG 197
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
LE + F ADGD+R+A+N LQ+TY+G +N+ENV +CD P P ++N+++ + ++
Sbjct: 198 LETLTFIADGDLRKAVNCLQSTYAGLEVINKENVLNICDIPSPERIENLLKFCINSEWKK 257
Query: 255 ACSGLKQLYDLGYSPTDIITTLFRIIKNYEM-AEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + G++P D+ T +++ Y++ +E +++EF+K A + G+ S +Q
Sbjct: 258 AHDIAYDMIREGHTPFDVALTSSNVLRRYDLGSEAVQIEFLKIGAMACNTMASGLASVIQ 317
Query: 314 LCGLLAKLSI 323
L LLA I
Sbjct: 318 LDKLLADWCI 327
>gi|68076857|ref|XP_680348.1| replication factor c subunit 4 [Plasmodium berghei strain ANKA]
gi|56501262|emb|CAH99168.1| replication factor c subunit 4, putative [Plasmodium berghei]
Length = 335
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 148/317 (46%), Positives = 224/317 (70%), Gaps = 2/317 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + D+VGN + L I GNMPNL+LAG PGTGKTTSIL LA E+LG
Sbjct: 18 WIEKYRPEYLEDVVGNPFVINTLKSIIVSGNMPNLLLAGAPGTGKTTSILCLASEMLGSQ 77
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++AV+ELNASDDRGI+V+R++IK FA K+++LPPG+HK+++LDE DSMT AQQ+LRR
Sbjct: 78 AKKAVLELNASDDRGINVIRDRIKSFA-KEISLPPGRHKIIILDEVDSMTTAAQQSLRRI 136
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME+YS++TRFALACN S KII+ +QSRCAI+R+ +L+D+++L R++ + + E + Y +G
Sbjct: 137 MELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLTDDQVLKRILKICEYENIKYTDDG 196
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
LE I F ADGD+R+A+N LQ+TY+G VN+ENV +CD P P ++N++++ + ++
Sbjct: 197 LETITFIADGDLRKAVNCLQSTYAGLEVVNKENVLNICDIPSPERIENLLKHCISSEWRK 256
Query: 255 ACSGLKQLYDLGYSPTDIITTLFRIIKNYEM-AEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + G++P D+ T +++ Y++ +E +++EF+K A + G+ S +Q
Sbjct: 257 AHDIAYDMIKEGHTPFDVALTSSNVLRRYDLGSEAIQIEFLKIGAMACNTMASGLSSVIQ 316
Query: 314 LCGLLAKLSIVRETAKA 330
+ L+A I +T +
Sbjct: 317 MDKLIADWCIAAKTLRG 333
>gi|225678578|gb|EEH16862.1| replication factor C subunit 4 [Paracoccidioides brasiliensis Pb03]
Length = 387
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 165/332 (49%), Positives = 219/332 (65%), Gaps = 49/332 (14%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
Y++PWVEKYRP + DIVGN + + RL IIARDGNMP++I++G PG GKTTSIL LA ++
Sbjct: 26 YELPWVEKYRPVYLDDIVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSILCLARQM 85
Query: 71 LGPNYREAVMELNASDDR--------------------GIDVVRNKIKMFAQKKVTLPPG 110
LG +Y+EAV+ELNASD+R GIDVVRN+IK FAQKKVTLPPG
Sbjct: 86 LGDSYKEAVLELNASDERGMATPIFLSSVERTLTYLLAGIDVVRNRIKGFAQKKVTLPPG 145
Query: 111 KHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRL 170
+HK+V+LDEADSMT+GA + + I +P S +R
Sbjct: 146 RHKLVILDEADSMTSGASKP----------------SGEHGGYIPQPPAS----IRLQ-- 183
Query: 171 SDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFK 230
SRL + Q E V + +G+ A+IF+A+GDMRQA+NNLQ+T++GF FV+ +NVF+
Sbjct: 184 ------SRLTQICQAENVKHSEDGIAALIFSAEGDMRQAINNLQSTWAGFGFVSGDNVFR 237
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHL 289
V D PHP+ V+ M++ EG D A L +L+DLGYS DII+T+FR+ K ++EH
Sbjct: 238 VVDSPHPIKVQAMIKACWEGNIDAALDTLNELWDLGYSSHDIISTMFRVTKTIPTLSEHA 297
Query: 290 KLEFMKEAGFAHMRICDGVGSYLQLCGLLAKL 321
KLEF+KE GFAHMRI +GV + +QL G +AKL
Sbjct: 298 KLEFIKEIGFAHMRILEGVQTLVQLSGCVAKL 329
>gi|124806707|ref|XP_001350805.1| replication factor C subunit 4 [Plasmodium falciparum 3D7]
gi|11559514|gb|AAG37992.1|AF126257_1 replication factor C subunit 4 [Plasmodium falciparum]
gi|23496934|gb|AAN36485.1| replication factor C subunit 4 [Plasmodium falciparum 3D7]
Length = 336
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 146/306 (47%), Positives = 219/306 (71%), Gaps = 1/306 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + ++VGN + L I GNMPNL+LAG PGTGKTTSIL LA E+LG
Sbjct: 18 WIEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGTGKTTSILCLASEMLGNQ 77
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++AV+ELNASDDRGI+V+R++IK FA++ ++LPPGKHK+++LDE DSMT AQQ+LRR
Sbjct: 78 AKKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQSLRRI 137
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME+YS++TRFALACN S KII+ +QSRCAI+R+ +LSD+++L R++ + E + Y +G
Sbjct: 138 MELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRILKICDLENIKYTDDG 197
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
L+A+ F ADGD+R+A+N LQ+TY+G +N+ENV +CD P P ++N++++ + ++
Sbjct: 198 LDALTFIADGDLRKAVNCLQSTYAGLEVINKENVLHICDIPSPERIENLLKHCVNSEWKK 257
Query: 255 ACSGLKQLYDLGYSPTDIITTLFRIIKNYEM-AEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + G++P DI T +++ + + +E +++EF+K A + G+ S +Q
Sbjct: 258 AHDIAYSMIKEGHTPYDISLTSSNVLRRFNIGSEVIQIEFLKIGAMACNTMATGLTSVIQ 317
Query: 314 LCGLLA 319
L LLA
Sbjct: 318 LDKLLA 323
>gi|83032953|ref|XP_729265.1| replication factor C subunit 4 [Plasmodium yoelii yoelii 17XNL]
gi|23486553|gb|EAA20830.1| replication factor C subunit 4 [Plasmodium yoelii yoelii]
Length = 358
Score = 314 bits (804), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 148/331 (44%), Positives = 224/331 (67%), Gaps = 15/331 (4%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILA--------------GPPGTGKT 60
W+EKYRP + D+VGN + L I GNMPNL+LA G PGTGKT
Sbjct: 18 WIEKYRPEYLEDVVGNPFVINTLKSIIVSGNMPNLLLAVKIIFSLLMNLFCCGAPGTGKT 77
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TSIL LA E+LG ++AV+ELNASDDRGI+V+R++IK FA++ ++LPPG+HK+++LDE
Sbjct: 78 TSILCLASEMLGSQAKKAVLELNASDDRGINVIRDRIKSFAKEVISLPPGRHKIIILDEV 137
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT AQQ+LRR ME+YS++TRFALACN S KII+ +QSRCAI+R+ +L+D+++L R++
Sbjct: 138 DSMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLTDDQVLKRIL 197
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+ + E + Y +GLE I F ADGD+R+A+N LQ+TY+G +N+ENV +CD P P +
Sbjct: 198 KICEYENIKYTDDGLETITFIADGDLRKAVNCLQSTYAGLEVINKENVLNICDIPSPERI 257
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEM-AEHLKLEFMKEAGF 299
+N++++ + ++ A + G++P D+ T +++ Y++ +E +++EF+K
Sbjct: 258 ENLLKHCISSEWRKAHDIAYDMIKEGHTPFDVALTSSNVLRRYDLGSEAIQIEFLKIGAM 317
Query: 300 AHMRICDGVGSYLQLCGLLAKLSIVRETAKA 330
A + G+ S +QL L+A I +T K
Sbjct: 318 ACNTMASGLSSVIQLDKLIADWCIAAKTLKG 348
>gi|358340400|dbj|GAA48300.1| replication factor C subunit 2, partial [Clonorchis sinensis]
Length = 965
Score = 307 bits (787), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 142/203 (69%), Positives = 173/203 (85%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
++DIPWVEKYRP + DIVGN + RL +R+GN+PN+I+AGPPG GKTTSIL LAH
Sbjct: 108 SHDIPWVEKYRPVVLTDIVGNEATILRLTAFSREGNVPNIIIAGPPGCGKTTSILCLAHA 167
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
L+G +Y+EAV+ELNAS+DRGIDVVRNKIKMFAQKKVTLPPG+ K+++LDEADSMT GAQQ
Sbjct: 168 LIGSSYKEAVLELNASNDRGIDVVRNKIKMFAQKKVTLPPGRQKIIILDEADSMTEGAQQ 227
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRRTMEIYS +TRFALACN SSK+IEPIQSRCA++R++RL+ +I++RL+ V + E V
Sbjct: 228 ALRRTMEIYSRTTRFALACNDSSKLIEPIQSRCAVLRYARLTAAQIMARLIEVCRAENVS 287
Query: 190 YVPEGLEAIIFTADGDMRQALNN 212
Y EGLEAI+FTADGDMRQ N
Sbjct: 288 YTDEGLEAIVFTADGDMRQVYAN 310
>gi|6644334|gb|AAF21015.1|AF208499_1 replication factor C subunit 2, partial [Rattus norvegicus]
Length = 216
Score = 293 bits (751), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 132/206 (64%), Positives = 169/206 (82%)
Query: 116 VLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEI 175
+LDEADSMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRC +R+++L+D ++
Sbjct: 1 ILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCGWLRYTKLTDAQV 60
Query: 176 LSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQP 235
LSRLM V+++EKVPY +GLEAIIFTA GDMRQALNNLQ+T+SGF ++N ENVFKVCD+P
Sbjct: 61 LSRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEP 120
Query: 236 HPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMK 295
HPL VK M+++ ++ D+A L L+ LGYSP D+I +FR+ K + MAE+LKLEF+K
Sbjct: 121 HPLLVKEMIQHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIK 180
Query: 296 EAGFAHMRICDGVGSYLQLCGLLAKL 321
E G+ HM++ +GV S LQ+ GLLA+L
Sbjct: 181 EIGYTHMKVAEGVNSLLQMAGLLARL 206
>gi|146304798|ref|YP_001192114.1| replication factor C small subunit [Metallosphaera sedula DSM 5348]
gi|145703048|gb|ABP96190.1| replication factor C small subunit [Metallosphaera sedula DSM 5348]
Length = 326
Score = 290 bits (742), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 156/318 (49%), Positives = 209/318 (65%), Gaps = 9/318 (2%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
+I W EKYRP + DIV D V RL ++ NMP+L+ AGPPGTGKTTS LAL H+L
Sbjct: 4 EILWAEKYRPRSLDDIVNQRDIVERLKHFVKEKNMPHLLFAGPPGTGKTTSALALVHDLY 63
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQ 129
G NY + ++ELNASD+RGIDV+RNK+K FA+ T+ PG K V+LDEAD+MTA AQQ
Sbjct: 64 GENYEQYLLELNASDERGIDVIRNKVKEFAR---TVTPGSVPFKTVLLDEADNMTADAQQ 120
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRRTME+Y+ +TRF LACN SKII+PIQSR A+ RF L E+++SRL ++++E V
Sbjct: 121 ALRRTMELYTETTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVISRLEFIMKQEGVQ 180
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
Y P+ L+ I +GDMR+A+N LQA S + V QE VFKV P V++MV+ L+
Sbjct: 181 YDPKALDVIYDVTNGDMRKAINVLQAA-SAYGKVTQEAVFKVLGLAQPKEVRDMVKLALQ 239
Query: 250 GKFDDACSGLKQL-YDLGYSPTDIITTLFRII--KNYEMAEHLKLEFMKEAGFAHMRICD 306
G+F DA S L L + G S DI+ + R I Y++ E L++ G RI +
Sbjct: 240 GRFMDARSKLLSLIINYGLSGEDIVKQVHRDIFSNEYQIPEELRVLLTDYIGEVEFRIIE 299
Query: 307 GVGSYLQLCGLLAKLSIV 324
G +QL +LAKL+++
Sbjct: 300 GADDEIQLSAMLAKLALL 317
>gi|297680206|ref|XP_002817894.1| PREDICTED: replication factor C subunit 2 [Pongo abelii]
Length = 209
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 129/199 (64%), Positives = 164/199 (82%)
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RLM V
Sbjct: 1 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNV 60
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
+++E+VPY +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL VK
Sbjct: 61 IEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKE 120
Query: 243 MVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHM 302
M+++ + D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+ HM
Sbjct: 121 MIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHM 180
Query: 303 RICDGVGSYLQLCGLLAKL 321
+I +GV S LQ+ GLLA+L
Sbjct: 181 KIAEGVNSLLQMAGLLARL 199
>gi|337285093|ref|YP_004624567.1| Replication factor C, small subunit (rfcS) [Pyrococcus yayanosii
CH1]
gi|334901027|gb|AEH25295.1| Replication factor C, small subunit (rfcS) [Pyrococcus yayanosii
CH1]
Length = 326
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 146/327 (44%), Positives = 209/327 (63%), Gaps = 6/327 (1%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
MA + PWVEKYRP ++ DIVG + RL + G+MP+L+ AGPPGTGKT
Sbjct: 1 MAEEVREVKVLEKPWVEKYRPQRLDDIVGQEHIIKRLKHYVKTGSMPHLLFAGPPGTGKT 60
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLD 118
TS LALA EL G N+R +ELNASD+RGI+V+R K+K FA+ K P G K++ LD
Sbjct: 61 TSALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTK---PIGGASFKIIFLD 117
Query: 119 EADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSR 178
EAD++T AQQALRRTME++SN+ RF L+ N SS+IIEPIQSRCAI RF LSDE++ R
Sbjct: 118 EADALTQDAQQALRRTMEMFSNNVRFILSANYSSRIIEPIQSRCAIFRFRPLSDEDVAKR 177
Query: 179 LMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPL 238
L + ++E + EGL+AI++ A+GD+R+A+N LQA + + + ENVF V + P
Sbjct: 178 LKYIAEQEGLELTEEGLQAILYVAEGDLRRAINVLQAAAALDKKITDENVFTVASRARPE 237
Query: 239 HVKNMVRNVLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
++ M+ LEG F A L++ L G S D++ + R + N ++E K++ +
Sbjct: 238 DIREMMLLALEGNFLKAREKLREILLKQGLSGEDVLIQMHREVFNLPISEPKKVQLADKI 297
Query: 298 GFAHMRICDGVGSYLQLCGLLAKLSIV 324
G + R+ +G +QL LLA+ +++
Sbjct: 298 GEYNFRLVEGANEMIQLEALLAQFTLI 324
>gi|374633940|ref|ZP_09706305.1| DNA polymerase III, gamma/tau subunit [Metallosphaera
yellowstonensis MK1]
gi|373523728|gb|EHP68648.1| DNA polymerase III, gamma/tau subunit [Metallosphaera
yellowstonensis MK1]
Length = 326
Score = 283 bits (725), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 149/317 (47%), Positives = 206/317 (64%), Gaps = 5/317 (1%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
+++ W EKYRP + DIV D V RL ++ NMP+L+ AGPPGTGKTTS LAL ++L
Sbjct: 3 FEVLWAEKYRPKSLDDIVNQKDIVERLKKFVKEKNMPHLLFAGPPGTGKTTSALALVYDL 62
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
G NYR+ +ELNASD+RGIDV+RNK+K FA + VT K V+LDEAD+MTA AQQA
Sbjct: 63 YGENYRQYFLELNASDERGIDVIRNKVKDFA-RTVTPQDVPFKTVLLDEADNMTADAQQA 121
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRRTME+Y+ +TRF LACN SKII+PIQSR A+ RF L E+++SRL + + EKV Y
Sbjct: 122 LRRTMELYTETTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVISRLEFIAKNEKVEY 181
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
P+ L+ I GDMR+A+N LQA+ S + V E V+KV P ++ MV++ L+G
Sbjct: 182 DPKALDTIYEITSGDMRKAINILQAS-SAYGKVTTEAVYKVLGMAQPKEIREMVKSALQG 240
Query: 251 KFDDACSGLKQLY-DLGYSPTDIITTLFRII--KNYEMAEHLKLEFMKEAGFAHMRICDG 307
+F +A S L L + G S DI+ + R I +++ E L++ G RI +G
Sbjct: 241 RFTEARSKLLSLMINYGLSGEDIVKQVHRDIFSNEFQIPEELRVIMADYVGEVEYRIIEG 300
Query: 308 VGSYLQLCGLLAKLSIV 324
+QL +LA++S++
Sbjct: 301 ADDEIQLSAMLARISLL 317
>gi|332796204|ref|YP_004457704.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
gi|332693939|gb|AEE93406.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
Length = 326
Score = 283 bits (724), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 154/315 (48%), Positives = 202/315 (64%), Gaps = 5/315 (1%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
+I W EKYRP + DIV D V RL ++ NMP+L+ AGPPGTGKTT+ LAL H+L
Sbjct: 4 EILWAEKYRPRSLDDIVNQKDIVERLKRFVKEKNMPHLLFAGPPGTGKTTAALALVHDLY 63
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G +Y + +ELNASD+RGIDV+RNK+K FA+ V+ KV++LDEAD+MTA AQQAL
Sbjct: 64 GDSYEQFFLELNASDERGIDVIRNKVKEFARTMVS-SSVPFKVILLDEADNMTADAQQAL 122
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTME+Y+ STRF LACN SKII+PIQSR A+ RF L E+++SRL + +EEKV Y
Sbjct: 123 RRTMELYTESTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVVSRLEFIAKEEKVEYD 182
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+ LE I GDMR+A+N LQA S + V E VFKV P V++M++ L GK
Sbjct: 183 EKALETIYDVTMGDMRKAINTLQAA-SAYGKVTIETVFKVLGLAQPKEVRDMLKLALSGK 241
Query: 252 FDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMA--EHLKLEFMKEAGFAHMRICDGV 308
F +A L+ L G S DI+ L R + + E+ E L++ M G RI +G
Sbjct: 242 FMEAREKLRSLLVTYGLSGEDIVKQLHRELTSNELQIPEELRVLLMDYIGEVEFRIIEGA 301
Query: 309 GSYLQLCGLLAKLSI 323
+QL LLAK++I
Sbjct: 302 DDEIQLSALLAKIAI 316
>gi|240104119|ref|YP_002960428.1| Replication factor C, small subunit (rfcS) [Thermococcus
gammatolerans EJ3]
gi|239911673|gb|ACS34564.1| Replication factor C, small subunit (rfcS) [Thermococcus
gammatolerans EJ3]
Length = 333
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 148/327 (45%), Positives = 208/327 (63%), Gaps = 6/327 (1%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
MA + PWVEKYRP ++ DIVG V RL A+ G+MP+L+ AGPPGTGKT
Sbjct: 4 MAEEIREVKVLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYAKTGSMPHLLFAGPPGTGKT 63
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLD 118
++ LALA EL G N+R +ELNASD+RGI+V+R K+K FA+ K P G K++ LD
Sbjct: 64 SAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTK---PIGGASFKIIFLD 120
Query: 119 EADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSR 178
EAD++T AQQALRRTME++SN+ RF L+CN SSKIIEPIQSRCAI RF L+DE+I R
Sbjct: 121 EADALTQDAQQALRRTMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLNDEDIAKR 180
Query: 179 LMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPL 238
+ + ++E + EGL+AI++ A+GD+R+A+N LQA + + + ENVF V + P
Sbjct: 181 IRYIAEQEGLELTEEGLQAILYVAEGDLRRAINVLQAAAALDKKITDENVFLVASRARPE 240
Query: 239 HVKNMVRNVLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
V+ M+ LEG F A L+ L G S D++ + + + N + E K+ +
Sbjct: 241 DVREMMTLALEGNFLKARDKLRDILLKQGLSGEDVLIQMHKEVFNLPIPEDKKVALADKI 300
Query: 298 GFAHMRICDGVGSYLQLCGLLAKLSIV 324
G + R+ +G +QL LLA+ +I+
Sbjct: 301 GEYNFRLVEGANEMIQLEALLAQFTIM 327
>gi|227827646|ref|YP_002829426.1| replication factor C small subunit [Sulfolobus islandicus M.14.25]
gi|229584850|ref|YP_002843352.1| replication factor C small subunit [Sulfolobus islandicus M.16.27]
gi|238619814|ref|YP_002914640.1| replication factor C small subunit [Sulfolobus islandicus M.16.4]
gi|385773316|ref|YP_005645882.1| replication factor C [Sulfolobus islandicus HVE10/4]
gi|385775948|ref|YP_005648516.1| replication factor C [Sulfolobus islandicus REY15A]
gi|227459442|gb|ACP38128.1| Replication factor C [Sulfolobus islandicus M.14.25]
gi|228019900|gb|ACP55307.1| Replication factor C [Sulfolobus islandicus M.16.27]
gi|238380884|gb|ACR41972.1| Replication factor C [Sulfolobus islandicus M.16.4]
gi|323474696|gb|ADX85302.1| Replication factor C [Sulfolobus islandicus REY15A]
gi|323477430|gb|ADX82668.1| Replication factor C [Sulfolobus islandicus HVE10/4]
Length = 330
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 153/322 (47%), Positives = 205/322 (63%), Gaps = 9/322 (2%)
Query: 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
S+ +I W EKYRP + DIV + + RL ++ NMP+L+ AGPPGTGKTT+ LAL
Sbjct: 2 SAKVEEILWAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALAL 61
Query: 67 AHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMT 124
H+L G NY E +ELNASD+RGIDV+RNK+K FA+ T+ PG KVV+LDEAD+MT
Sbjct: 62 VHDLYGDNYVEYFLELNASDERGIDVIRNKVKEFAR---TVIPGNVPFKVVLLDEADNMT 118
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
A AQQALRRTME+Y+ +TRF LACN SKIIEPIQSR A+ RF L E++++RL+ + +
Sbjct: 119 ADAQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAK 178
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EK Y + LE I GDMR+++N LQA S + ++ E VFKV P V+ M+
Sbjct: 179 NEKAEYDQKALETIYDITMGDMRKSINILQAA-SAYGKISVEAVFKVLGLAQPKEVREMI 237
Query: 245 RNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEM--AEHLKLEFMKEAGFAH 301
L+GKF A L+ L G S DII + R I + E+ +E L++ + G
Sbjct: 238 SLALQGKFTQAREKLRTLLVTYGLSGEDIIKQIHREITSSELQISEELRVLLLDYIGETE 297
Query: 302 MRICDGVGSYLQLCGLLAKLSI 323
RI +G +QL LLAK++I
Sbjct: 298 FRIIEGADDEIQLSALLAKMAI 319
>gi|15897670|ref|NP_342275.1| replication factor C small subunit [Sulfolobus solfataricus P2]
gi|284174995|ref|ZP_06388964.1| replication factor C small subunit [Sulfolobus solfataricus 98/2]
gi|384434284|ref|YP_005643642.1| replication factor C [Sulfolobus solfataricus 98/2]
gi|42559539|sp|Q9UXF5.1|RFCS_SULSO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=SsoRFC small subunit
gi|6015708|emb|CAB57535.1| activator 1, replication factor C, small subunit [Sulfolobus
solfataricus P2]
gi|13813941|gb|AAK41065.1| Activator 1, replication factor C, small subunit (rfc) [Sulfolobus
solfataricus P2]
gi|261602438|gb|ACX92041.1| Replication factor C [Sulfolobus solfataricus 98/2]
Length = 330
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 152/322 (47%), Positives = 205/322 (63%), Gaps = 9/322 (2%)
Query: 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
S+ +I W EKYRP + DIV + + RL ++ NMP+L+ AGPPGTGKTT+ LAL
Sbjct: 2 STKVEEILWAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALAL 61
Query: 67 AHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMT 124
H+L G NY E +ELNASD+RGIDV+RNK+K FA+ T+ PG KVV+LDEAD+MT
Sbjct: 62 VHDLYGDNYTEYFLELNASDERGIDVIRNKVKEFAR---TVIPGDIPFKVVLLDEADNMT 118
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
A AQQALRRTME+Y+ +TRF LACN SKIIEPIQSR A+ RF L E++++RL+ + +
Sbjct: 119 ADAQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIYIAK 178
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EK Y + LE I GDMR+++N LQA S + ++ E VFKV P V+ M+
Sbjct: 179 NEKAEYDQKALETIYDITMGDMRKSINILQAA-SAYGKISVEAVFKVLGLAQPKEVREMI 237
Query: 245 RNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYE--MAEHLKLEFMKEAGFAH 301
L+GKF A L+ L G S DI+ + R I + E ++E L++ + G
Sbjct: 238 NLALQGKFTQARDKLRTLLITYGLSGEDIVKQIHREITSSEIQISEELRVLLLDYIGETE 297
Query: 302 MRICDGVGSYLQLCGLLAKLSI 323
RI +G +QL LLAK++I
Sbjct: 298 FRIIEGADDEIQLSALLAKMAI 319
>gi|227830342|ref|YP_002832122.1| replication factor C small subunit [Sulfolobus islandicus L.S.2.15]
gi|229579159|ref|YP_002837557.1| replication factor C small subunit [Sulfolobus islandicus
Y.G.57.14]
gi|284997767|ref|YP_003419534.1| replication factor C [Sulfolobus islandicus L.D.8.5]
gi|227456790|gb|ACP35477.1| Replication factor C [Sulfolobus islandicus L.S.2.15]
gi|228009873|gb|ACP45635.1| Replication factor C [Sulfolobus islandicus Y.G.57.14]
gi|284445662|gb|ADB87164.1| Replication factor C [Sulfolobus islandicus L.D.8.5]
Length = 330
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 152/322 (47%), Positives = 204/322 (63%), Gaps = 9/322 (2%)
Query: 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
S+ +I W EKYRP + DIV + + RL ++ NMP+L+ AGPPGTGKTT+ LAL
Sbjct: 2 SAKVEEILWAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALAL 61
Query: 67 AHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMT 124
H+L G NY E +ELNASD+RGIDV+RNK+K FA+ T+ P KVV+LDEAD+MT
Sbjct: 62 VHDLYGDNYVEYFLELNASDERGIDVIRNKVKEFAR---TVIPSNVPFKVVLLDEADNMT 118
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
A AQQALRRTME+Y+ +TRF LACN SKIIEPIQSR A+ RF L E++++RL+ + +
Sbjct: 119 ADAQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAK 178
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EK Y + LE I GDMR+++N LQA S + ++ E VFKV P V+ M+
Sbjct: 179 NEKAEYDQKALETIYDITMGDMRKSINILQAA-SAYGKISVEAVFKVLGLAQPKEVREMI 237
Query: 245 RNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEM--AEHLKLEFMKEAGFAH 301
L+GKF A L+ L G S DII + R I + E+ +E L++ + G
Sbjct: 238 SLALQGKFTQAREKLRTLLVTYGLSGEDIIKQIHREITSSELQISEELRVLLLDYIGETE 297
Query: 302 MRICDGVGSYLQLCGLLAKLSI 323
RI +G +QL LLAK++I
Sbjct: 298 FRIIEGADDEIQLSALLAKMAI 319
>gi|15988297|pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988298|pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988299|pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988300|pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988301|pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988302|pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 144/327 (44%), Positives = 205/327 (62%), Gaps = 6/327 (1%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
M+ + PWVEKYRP ++ DIVG V RL + G+MP+L+ AGPPG GKT
Sbjct: 1 MSEEIREVKVLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKT 60
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLD 118
T+ LALA EL G N+R +ELNASD+RGI+V+R K+K FA+ K P G K++ LD
Sbjct: 61 TAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTK---PIGGASFKIIFLD 117
Query: 119 EADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSR 178
EAD++T AQQALRRTME++S++ RF L+CN SSKIIEPIQSRCAI RF L DE+I R
Sbjct: 118 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKR 177
Query: 179 LMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPL 238
L + + E + EGL+AI++ A+GDMR+A+N LQA + + + ENVF V + P
Sbjct: 178 LRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVASRARPE 237
Query: 239 HVKNMVRNVLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
++ M+ L+G F A L++ L G S D++ + + + N + E K+ +
Sbjct: 238 DIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADKI 297
Query: 298 GFAHMRICDGVGSYLQLCGLLAKLSIV 324
G + R+ +G +QL LLA+ +++
Sbjct: 298 GEYNFRLVEGANEIIQLEALLAQFTLI 324
>gi|256811337|ref|YP_003128706.1| replication factor C small subunit [Methanocaldococcus fervens
AG86]
gi|256794537|gb|ACV25206.1| Replication factor C [Methanocaldococcus fervens AG86]
Length = 316
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 146/316 (46%), Positives = 199/316 (62%), Gaps = 6/316 (1%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
D PWVEKYRP + +IVG + V RL +MP+L+ +GPPG GKTT+ L LA +L
Sbjct: 2 DKPWVEKYRPKTLDEIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKTTAALCLARDLF 61
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQ 129
G N+RE +ELNASD+RGIDV+R K+K FA+ K P G K++ LDE+D++T AQ
Sbjct: 62 GENWRENFLELNASDERGIDVIRTKVKDFARTK---PIGDVPFKIIFLDESDALTPDAQN 118
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRRTME YS+ RF L+CN SKII PIQSRCAI RFS L E+I +L + ++E +
Sbjct: 119 ALRRTMEKYSDVCRFILSCNYPSKIIPPIQSRCAIFRFSPLKKEDIAKKLKEIAEKEGLK 178
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
GLEAII+ ++GDMR+A+N LQ + ++ E V+KV + P VK M+ LE
Sbjct: 179 LTESGLEAIIYVSEGDMRKAINVLQTAAALSEVIDDEIVYKVSSRARPEEVKKMMELALE 238
Query: 250 GKFDDACSGL-KQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGV 308
GKF +A L K + + G S DI+ +FR I N ++ E K+E G RI +G
Sbjct: 239 GKFVEARDLLYKLMVEWGMSGEDILNQMFREINNLDIDERKKVELADAIGETDFRIVEGA 298
Query: 309 GSYLQLCGLLAKLSIV 324
+QL LLAK++++
Sbjct: 299 NERIQLSALLAKMALM 314
>gi|15920690|ref|NP_376359.1| replication factor C small subunit [Sulfolobus tokodaii str. 7]
gi|42559516|sp|Q975D3.1|RFCS_SULTO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|342306208|dbj|BAK54297.1| replication factor C small subunit [Sulfolobus tokodaii str. 7]
Length = 327
Score = 274 bits (700), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 153/320 (47%), Positives = 203/320 (63%), Gaps = 9/320 (2%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
+I W EKYRP + DIV D V RL +D NMP+L+ +GPPGTGKTT+ LAL H+L
Sbjct: 6 EILWAEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLY 65
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQ 129
G NYR+ +ELNASD+RGIDV+RNK+K FA+ T+ G KVV+LDEAD+MTA AQQ
Sbjct: 66 GDNYRQYFLELNASDERGIDVIRNKVKEFAR---TVAGGNVPFKVVLLDEADNMTADAQQ 122
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRRTME+Y+ +TRF LACN SKIIEPIQSR A+ RF L E++++RL + + EKV
Sbjct: 123 ALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLAYIAKNEKVE 182
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
Y + LE I GDMR+A+N LQA+ S + V E V+KV P ++ M+ L+
Sbjct: 183 YDQKALETIYDITQGDMRKAINILQAS-SVYGKVTVEAVYKVLGLAQPKEIREMIMLALQ 241
Query: 250 GKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYE--MAEHLKLEFMKEAGFAHMRICD 306
G F A L++L + G S DII + R + E + + LK+ + G RI +
Sbjct: 242 GNFLKAREKLRELLVNYGLSGEDIIKQIHREVTGNEINIPDDLKVLLVDYIGEVEYRIME 301
Query: 307 GVGSYLQLCGLLAKLSIVRE 326
G +QL LLAKL++ E
Sbjct: 302 GADDEIQLNALLAKLAVYGE 321
>gi|229582086|ref|YP_002840485.1| replication factor C small subunit [Sulfolobus islandicus
Y.N.15.51]
gi|228012802|gb|ACP48563.1| Replication factor C [Sulfolobus islandicus Y.N.15.51]
Length = 330
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 151/322 (46%), Positives = 203/322 (63%), Gaps = 9/322 (2%)
Query: 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
S+ +I W EKYRP + DIV + + RL ++ NMP+L+ AGP GTGKTT+ LAL
Sbjct: 2 SAKVEEILWAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPSGTGKTTAALAL 61
Query: 67 AHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMT 124
H+L G NY E +ELNASD+RGIDV+RNK+K FA+ T+ P KVV+LDEAD+MT
Sbjct: 62 VHDLYGDNYVEYFLELNASDERGIDVIRNKVKEFAR---TVIPSNVPFKVVLLDEADNMT 118
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
A AQQALRRTME+Y+ +TRF LACN SKIIEPIQSR A+ RF L E++++RL+ + +
Sbjct: 119 ADAQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAK 178
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EK Y + LE I GDMR+++N LQA S + ++ E VFKV P V+ M+
Sbjct: 179 NEKAEYDQKALETIYDITMGDMRKSINILQAA-SAYGKISVEAVFKVLGLAQPKEVREMI 237
Query: 245 RNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEM--AEHLKLEFMKEAGFAH 301
L+GKF A L+ L G S DII + R I + E+ +E L++ + G
Sbjct: 238 SLALQGKFTQAREKLRTLLVTYGLSGEDIIKQIHREITSSELQISEELRVLLLDYIGETE 297
Query: 302 MRICDGVGSYLQLCGLLAKLSI 323
RI +G +QL LLAK++I
Sbjct: 298 FRIIEGADDEIQLSALLAKMAI 319
>gi|212224565|ref|YP_002307801.1| DNA replication ATPase [Thermococcus onnurineus NA1]
gi|212009522|gb|ACJ16904.1| ATPase involved in DNA replication [Thermococcus onnurineus NA1]
Length = 326
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 140/314 (44%), Positives = 201/314 (64%), Gaps = 6/314 (1%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP ++ DIVG V RL + G+MP+L+ AGPPG GKTT+ LALA EL G
Sbjct: 14 PWVEKYRPQRLEDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGE 73
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGAQQAL 131
++R +ELNASD+RGI+V+R K+K FA+ K P G K++ LDEAD++T AQQAL
Sbjct: 74 HWRHNFLELNASDERGINVIREKVKEFARTK---PIGGASFKIIFLDEADALTQDAQQAL 130
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTME++S + RF L+CN SSKIIEPIQSRCAI RF L+D +I R+ + + E +
Sbjct: 131 RRTMEMFSTNVRFILSCNYSSKIIEPIQSRCAIFRFRPLNDNDIAKRIKYIAENEGLELT 190
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+GL+A+++ A+GD+R+A+N LQA + R + ENVF V + P V+ M+ LEG
Sbjct: 191 EDGLQALLYVAEGDLRRAINVLQAAAALDRKITDENVFLVASRARPEDVREMMNLALEGN 250
Query: 252 FDDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
F A L++ L G S D++ + + + N + E K+ + G + R+ +G
Sbjct: 251 FLKAREKLREILLKQGLSGEDVLIQMHKEVFNLTIPEDRKVALADKIGEYNFRLVEGANE 310
Query: 311 YLQLCGLLAKLSIV 324
+QL LLA+ +++
Sbjct: 311 MIQLEALLAQFTLM 324
>gi|330834115|ref|YP_004408843.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
gi|329566254|gb|AEB94359.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
Length = 325
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 150/318 (47%), Positives = 202/318 (63%), Gaps = 9/318 (2%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
+I W EKYRP + DIV D V RL ++ NMP+L+ AGPPGTGKTTS LAL H+L
Sbjct: 3 EILWAEKYRPRTLDDIVNQKDIVDRLKRFVKERNMPHLLFAGPPGTGKTTSALALVHDLY 62
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQ 129
G NY + +ELNASD+ GI+V+R K+K FA+ T+ PG K V+LDEAD+MT+ AQQ
Sbjct: 63 GENYDQFFLELNASDENGINVIRTKVKDFAR---TVTPGNVPFKTVLLDEADNMTSDAQQ 119
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRRTME+Y+ STRF LACN SKII+PIQSR A+ RF L E+++ RL +++EEKV
Sbjct: 120 ALRRTMELYTESTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVILRLENILKEEKVQ 179
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
Y + LE + GDMR+A+N LQA + + V ++V KV P ++ MV+ L+
Sbjct: 180 YDVKSLEVVYDVTGGDMRKAINVLQAA-AAYGKVTTDSVLKVLGLAQPKEIREMVKLALQ 238
Query: 250 GKFDDACSGLKQL-YDLGYSPTDIITTLFRII--KNYEMAEHLKLEFMKEAGFAHMRICD 306
GKF D+ S L L D G S DI+ + R I Y++ E L++ G RI +
Sbjct: 239 GKFLDSRSKLMSLIIDYGLSGEDIVKQVHRDIFSNEYQIPEELRVLMSDYLGEVEFRIIE 298
Query: 307 GVGSYLQLCGLLAKLSIV 324
G +QL +LAKL+I+
Sbjct: 299 GADDEIQLSAMLAKLAIL 316
>gi|70606693|ref|YP_255563.1| replication factor C small subunit [Sulfolobus acidocaldarius DSM
639]
gi|449066916|ref|YP_007433998.1| replication factor C small subunit [Sulfolobus acidocaldarius N8]
gi|449069188|ref|YP_007436269.1| replication factor C small subunit [Sulfolobus acidocaldarius
Ron12/I]
gi|73914011|sp|Q4JAB0.1|RFCS_SULAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|68567341|gb|AAY80270.1| replication factor C [Sulfolobus acidocaldarius DSM 639]
gi|449035424|gb|AGE70850.1| replication factor C small subunit [Sulfolobus acidocaldarius N8]
gi|449037696|gb|AGE73121.1| replication factor C small subunit [Sulfolobus acidocaldarius
Ron12/I]
Length = 325
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 145/315 (46%), Positives = 202/315 (64%), Gaps = 5/315 (1%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
+I W EKYRP + +IV + V RL ++ NMP+L+ AGPPGTGKTT+ LAL +L
Sbjct: 4 EILWAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLY 63
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G NYR+ +ELNASD+RGIDV+RNK+K FA + V KV++LDEAD+MTA AQQAL
Sbjct: 64 GNNYRQYFLELNASDERGIDVIRNKVKEFA-RTVASNNVPFKVILLDEADNMTADAQQAL 122
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTME+Y+ +TRF LACN SKIIEPIQSR A+ RF L E++++RL+ + + EKV +
Sbjct: 123 RRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNEKVEFD 182
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
P+G+E I GDMR+A+N +QA S + + E V+KV P ++ M+ L GK
Sbjct: 183 PKGIETIFDITQGDMRKAINVIQAA-SAYGKITVETVYKVLGLAQPKEIREMLHLALSGK 241
Query: 252 FDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMA--EHLKLEFMKEAGFAHMRICDGV 308
F A L++L + G S DII + + + E++ + LK+ + AG RI +G
Sbjct: 242 FLQARDKLRELLINYGLSGEDIIKQVHKELTGNEISIPDDLKVILVDYAGEVEFRIMEGA 301
Query: 309 GSYLQLCGLLAKLSI 323
+QL LAKL++
Sbjct: 302 DDEIQLSAFLAKLAL 316
>gi|297527205|ref|YP_003669229.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
gi|297256121|gb|ADI32330.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
Length = 329
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/326 (45%), Positives = 210/326 (64%), Gaps = 9/326 (2%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
SSS ++ W EKYRP + +IV + V+RL ++ NMP+L+ AGPPGTGKTT+
Sbjct: 2 SSSREVIAELLWAEKYRPKTLDEIVNQEEIVSRLKRFVQERNMPHLLFAGPPGTGKTTAA 61
Query: 64 LALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVT--LPPGKHKVVVLDEAD 121
LAH+L G NYR+ ++ELNASD+RGIDV+R+K+K FA+ +VT +P K+V+LDEAD
Sbjct: 62 HCLAHDLFGENYRQYMLELNASDERGIDVIRSKVKEFARTRVTANIP---FKIVLLDEAD 118
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
+MTA AQQALRR ME+Y+ +TRF L N SKIIEPIQSRCA+ RF+ L E+++SRL
Sbjct: 119 NMTADAQQALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKW 178
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ +EKV E LEAI ++GDMR+A+N LQA + R V ++V+KV HP ++
Sbjct: 179 IANQEKVEVDEEALEAIHDLSEGDMRRAINILQAAAALGR-VTVDSVYKVVGLAHPREIR 237
Query: 242 NMVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRII--KNYEMAEHLKLEFMKEAG 298
M++ L G F DA L++L + G S D+I + R I + ++ + K+ AG
Sbjct: 238 QMIQLALAGNFTDAREKLRKLMINYGLSGVDVIKQVHREIFSTDIKIPDEFKIIIADLAG 297
Query: 299 FAHMRICDGVGSYLQLCGLLAKLSIV 324
R+ +G +QL LA+L+ +
Sbjct: 298 EIQFRLVEGADDEIQLNAFLARLAFL 323
>gi|126466118|ref|YP_001041227.1| replication factor C small subunit [Staphylothermus marinus F1]
gi|158513390|sp|A3DNV9.1|RFCS_STAMF RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|126014941|gb|ABN70319.1| replication factor C small subunit [Staphylothermus marinus F1]
Length = 329
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 145/326 (44%), Positives = 210/326 (64%), Gaps = 9/326 (2%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
SSS ++ W EKYRP + +IV + V+RL ++ NMP+L+ AGPPGTGKTT+
Sbjct: 2 SSSREVIAELLWAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAA 61
Query: 64 LALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKV--TLPPGKHKVVVLDEAD 121
LAH+L G NYR+ ++ELNASD+RGIDV+R+K+K FA+ +V +P K+V+LDEAD
Sbjct: 62 HCLAHDLFGENYRQYMLELNASDERGIDVIRSKVKEFARTRVAANIP---FKIVLLDEAD 118
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
+MTA AQQALRR ME+Y+ +TRF L N SKIIEPIQSRCA+ RF+ L E+++SRL
Sbjct: 119 NMTADAQQALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKW 178
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ ++EKV E LEAI ++GDMR+A+N LQA + V ++V+KV HP ++
Sbjct: 179 IAEQEKVEIDEEALEAIHDLSEGDMRRAINILQAA-AALGKVTVDSVYKVVGLAHPREIR 237
Query: 242 NMVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRII--KNYEMAEHLKLEFMKEAG 298
M++ L G F+DA L++L + G S D+I + R I + ++ + K+ AG
Sbjct: 238 QMIQLALAGNFNDAREKLRELMINYGLSGVDVIKQVHREIFSTDIKIPDEFKIIIADLAG 297
Query: 299 FAHMRICDGVGSYLQLCGLLAKLSIV 324
R+ +G +QL LA+L+ +
Sbjct: 298 EIQFRLVEGADDEIQLNAFLARLAFL 323
>gi|432115451|gb|ELK36864.1| Replication factor C subunit 2 [Myotis davidii]
Length = 222
Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 129/223 (57%), Positives = 170/223 (76%), Gaps = 11/223 (4%)
Query: 99 MFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPI 158
MFAQ+KVTLP G+HK+++LDEADSMT GAQQALR+TMEIYS +TRFALA N S KIIEPI
Sbjct: 1 MFAQQKVTLPKGQHKIIILDEADSMTDGAQQALRKTMEIYSKTTRFALAYNASDKIIEPI 60
Query: 159 QSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS 218
QSRC ++R+++L++ ++L RLM V+++E V Y GLEAIIFTA GDM+Q LNNLQ+T+S
Sbjct: 61 QSRCTVLRYTKLTNGQVLIRLMNVIEKENVQYT--GLEAIIFTAQGDMQQVLNNLQSTFS 118
Query: 219 GFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR 278
GF F+N ENVFK VK M+++ + D A + L L+ LGYSP DII +F+
Sbjct: 119 GFGFINSENVFK---------VKEMIQHCVNANTDKAYTILAHLWHLGYSPEDIIGNIFQ 169
Query: 279 IIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKL 321
+ K ++MAE+LKLEF+KE + HM+I +GV S LQ+ GLL +L
Sbjct: 170 VCKIFQMAEYLKLEFIKEIRYTHMKIAEGVNSLLQMEGLLTRL 212
>gi|315230688|ref|YP_004071124.1| replication factor C small subunit [Thermococcus barophilus MP]
gi|315183716|gb|ADT83901.1| replication factor C small subunit [Thermococcus barophilus MP]
Length = 326
Score = 267 bits (683), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 139/327 (42%), Positives = 202/327 (61%), Gaps = 6/327 (1%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
M+ + PWVEKYRP ++ DIVG V RL + G+MP+L+ AGPPG GKT
Sbjct: 1 MSEEVKEVKILEKPWVEKYRPQRLDDIVGQDHIVKRLKHYVKTGSMPHLLFAGPPGVGKT 60
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLD 118
T+ L L EL G ++R +ELNASD+RGI+V+R K+K FA+ K P G K++ LD
Sbjct: 61 TAALCLTRELFGEHWRHNFLELNASDERGINVIREKVKEFARTK---PIGGASFKIIFLD 117
Query: 119 EADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSR 178
EAD++T AQQALRR ME++SN+ RF L+CN SSKIIEPIQSRCAI RF L DE+I R
Sbjct: 118 EADALTQDAQQALRRMMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLKDEDIAKR 177
Query: 179 LMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPL 238
+ + + E + EGL+A+++ A+GD+R+A+N LQA + + ENVF V + P
Sbjct: 178 IRFIAENEGLELTEEGLQALLYIAEGDLRRAINVLQAAAALDTKITDENVFLVASRARPE 237
Query: 239 HVKNMVRNVLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
++ M+ LEG F A L++ L G S D++ + + + N ++E K+ +
Sbjct: 238 DIREMMLMALEGNFLKAREKLREILLKQGLSGEDVLIQMHKEVFNLPISEPKKVALADKI 297
Query: 298 GFAHMRICDGVGSYLQLCGLLAKLSIV 324
G + R+ +G +QL LLA+ +++
Sbjct: 298 GEYNFRLVEGANEMIQLEALLAQFTLL 324
>gi|389860407|ref|YP_006362646.1| replication factor C small subunit [Thermogladius cellulolyticus
1633]
gi|388525310|gb|AFK50508.1| replication factor C small subunit [Thermogladius cellulolyticus
1633]
Length = 334
Score = 264 bits (675), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 143/315 (45%), Positives = 202/315 (64%), Gaps = 9/315 (2%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W EKYRP + ++V + VARL + NMP+L+ AGPPGTGKTT LAH+L G N
Sbjct: 16 WAEKYRPRTLDEVVNQKEVVARLKKFVEEKNMPHLLFAGPPGTGKTTLAHCLAHDLYGDN 75
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--LPPGKHKVVVLDEADSMTAGAQQALR 132
YR+ ++ELNASD+RGIDV+R+K+K FA+ +V +P K+++LDEAD+MTA AQQALR
Sbjct: 76 YRQYMLELNASDERGIDVIRSKVKEFARTRVAGEVP---FKIILLDEADNMTADAQQALR 132
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R ME+Y+ +TRF L N SKIIEPIQSRCA+ RF+ LS E+++ RL + ++E V Y
Sbjct: 133 RLMELYTATTRFILIANYPSKIIEPIQSRCAVFRFTPLSREDVVERLKYIAEKENVKYNT 192
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
E LE I ++GDMR+A+N LQA S V E V+KV HP V+ M++ L G F
Sbjct: 193 EALETIHELSEGDMRKAINILQAA-SALGEVTVEAVYKVVGLAHPKEVRQMLQLALSGNF 251
Query: 253 DDACSGLKQL-YDLGYSPTDIITTLFRII--KNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
+A S L++L + G S DII + R I + ++++ ++ AG R+ +G
Sbjct: 252 TEARSKLRELMLNYGLSGLDIIRQIHREIFSSDIKLSDEARIMIADYAGEIQFRLVEGAD 311
Query: 310 SYLQLCGLLAKLSIV 324
+QL LA+L+ +
Sbjct: 312 DEIQLNAFLARLAFM 326
>gi|365758549|gb|EHN00386.1| Rfc4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 187
Score = 263 bits (672), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 119/170 (70%), Positives = 148/170 (87%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + DIVGN + + RL IA+DGNMP++I++G PG GKTTS+ LAHELLG
Sbjct: 9 LPWVEKYRPKVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG 68
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+Y + V+ELNASDDRGIDVVRN+IK FAQKK+ LP G+HK+++LDEADSMTAGAQQALR
Sbjct: 69 NSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPQGRHKIIILDEADSMTAGAQQALR 128
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
RTME+YSNSTRFA ACN S+KIIEP+QSRCAI+R+S+LSDE++L RL+ +
Sbjct: 129 RTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLEI 178
>gi|354609736|ref|ZP_09027692.1| Replication factor C small subunit [Halobacterium sp. DL1]
gi|353194556|gb|EHB60058.1| Replication factor C small subunit [Halobacterium sp. DL1]
Length = 323
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 197/310 (63%), Gaps = 3/310 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WVEKYRP ++ D+VG+ D RL ++P+L+ AGP GTGKT S +++A E+ G +
Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASAVSIAKEIYGDD 71
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++E +ELNASD RGIDVVR++IK FA + + ++V+ LDEAD++T AQ ALRRT
Sbjct: 72 WQENFLELNASDQRGIDVVRDRIKNFA--RASFGGYDYRVIFLDEADALTDDAQSALRRT 129
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +SN+TRF L+CN SSKII+PIQSRCA+ RFS++ D+ + + L + E + Y G
Sbjct: 130 MEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFSQIDDDAVAAHLRDIAGREDLEYTEAG 189
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+++ ADGDMR+A+N LQA + V++E V+ + P ++ MV L+G F
Sbjct: 190 IDALVYAADGDMRRAINALQAASATGDAVDEEVVYAITATARPEEIEGMVTEALDGDFTA 249
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A S L L + G + DII + R + ++++ E + + G A RI +G +Q
Sbjct: 250 ARSTLDDLLTNRGLAGGDIIDQIHRSVWSFDVEEEAAVRLLDRLGEADFRIAEGANERVQ 309
Query: 314 LCGLLAKLSI 323
L LLA +++
Sbjct: 310 LEALLASVAL 319
>gi|347524285|ref|YP_004781855.1| Replication factor C [Pyrolobus fumarii 1A]
gi|343461167|gb|AEM39603.1| Replication factor C [Pyrolobus fumarii 1A]
Length = 327
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 140/322 (43%), Positives = 204/322 (63%), Gaps = 7/322 (2%)
Query: 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
+S ++ W EKYRP + +IV + V RL + NMP+L+ GPPGTGKTT+ AL
Sbjct: 2 ASELAELLWAEKYRPKTLDEIVNQEEIVRRLKKFVEEKNMPHLLFVGPPGTGKTTAAHAL 61
Query: 67 AHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG-KHKVVVLDEADSMTA 125
AH+L G NYR+ ++ELNASD+RGI+ +R K+K FA+ + PPG K+V+LDEAD+MTA
Sbjct: 62 AHDLFGENYRQYMLELNASDERGIETIRTKVKEFARSRT--PPGIPFKIVLLDEADNMTA 119
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQQALRR ME+Y+ STRF L N SKIIEPIQSRCAI RF+ L E++++RL + ++
Sbjct: 120 DAQQALRRLMEMYTASTRFILIANYPSKIIEPIQSRCAIFRFTPLKKEDVVARLKWICEQ 179
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E Y E LE I ++GDMR+A+N LQA + V E V+KV HP ++ +++
Sbjct: 180 EGCQYDEEALETIYEISEGDMRRAINILQAA-AALGKVTVEAVYKVVGLAHPKEIREIIK 238
Query: 246 NVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMA--EHLKLEFMKEAGFAHM 302
L+G+F DA L++L + G S TD+I + + + E+ + +++ AG
Sbjct: 239 LALDGRFTDARKKLRELMINYGLSGTDVIKQIHKEVFGPELKLPDEVRVLIADYAGEIQF 298
Query: 303 RICDGVGSYLQLCGLLAKLSIV 324
R+ +G +QL LA L+++
Sbjct: 299 RLVEGADDEIQLNAFLAWLAML 320
>gi|150400153|ref|YP_001323920.1| replication factor C small subunit [Methanococcus vannielii SB]
gi|166225157|sp|A6US36.1|RFCS_METVS RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|150012856|gb|ABR55308.1| Replication factor C [Methanococcus vannielii SB]
Length = 315
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 134/312 (42%), Positives = 197/312 (63%), Gaps = 2/312 (0%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + ++VG+ + + RL +MP+L+ +G PG GKTT+ L LA +L G
Sbjct: 4 PWVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYGN 63
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
++E +ELN+SD+RGIDV+R K+K FA+ K + KV+ LDE+D++T+ AQ ALRR
Sbjct: 64 TWKENFLELNSSDERGIDVIRTKVKDFARTK-PIGDAPFKVIFLDESDALTSDAQNALRR 122
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
TME YS+ RF L+CN SKII PIQSRCAI RFS L E+++ L + ++E +
Sbjct: 123 TMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVKNLKEISEKESINVEKS 182
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
G++AII+ ++GDMR+A+N LQ + + +N+ ++KV + P +K M L GKF
Sbjct: 183 GMDAIIYVSEGDMRKAINVLQTGAAVSKNINETVIYKVASKARPDEIKKMTELALNGKFV 242
Query: 254 DACSGL-KQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
+A L K + D G S DII +FR + N E++E K+ ++ G RI +G +
Sbjct: 243 EAREQLYKLMIDWGMSGEDIIIQIFREVPNLEISEKEKVHLVEAIGECDFRIVEGANERI 302
Query: 313 QLCGLLAKLSIV 324
QL LLAK+ I+
Sbjct: 303 QLSALLAKMGIL 314
>gi|399575998|ref|ZP_10769755.1| replication factor c small subunit [Halogranum salarium B-1]
gi|399238709|gb|EJN59636.1| replication factor c small subunit [Halogranum salarium B-1]
Length = 323
Score = 260 bits (665), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 135/324 (41%), Positives = 202/324 (62%), Gaps = 4/324 (1%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
M+ + SS +I W+EKYRP + D+ G D V RL ++P+L+ AGP G GKT
Sbjct: 1 MSEAEGSSPGREI-WIEKYRPQTLDDVYGQEDIVDRLESYIAQHDLPHLLFAGPAGIGKT 59
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
T A+A E+ G ++R +ELNASD+RGIDVVR++IK FA + + ++++ LDEA
Sbjct: 60 TCATAIAREVYGDDWRGNFLELNASDERGIDVVRDRIKNFA--RASFGGHDYRIIFLDEA 117
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DS+T+ AQ ALRRTME +S++TRF L+CN SSKII+PIQSRCA+ RF+ LSD+ + ++
Sbjct: 118 DSLTSDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFAPLSDDAVAGQIR 177
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+ E + EGL+A+++ ADGDMR+A+N+LQA + V++E V+ + P +
Sbjct: 178 KIADREGIEMTDEGLDALVYAADGDMRRAINSLQAAATTGGVVDEEAVYLITSTARPEEI 237
Query: 241 KNMVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGF 299
++MV +EG F A S L L D G + DII L R ++ + + + M+ G
Sbjct: 238 ESMVTAAIEGDFAQARSKLDTLLTDTGMAGGDIIDQLHRGAWDFGLDQRETVRLMERIGE 297
Query: 300 AHMRICDGVGSYLQLCGLLAKLSI 323
A RI +G +QL +LA L++
Sbjct: 298 ADYRITEGANEQVQLEAMLASLAL 321
>gi|383620026|ref|ZP_09946432.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
gi|448696276|ref|ZP_21697837.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
gi|445783964|gb|EMA34788.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
Length = 330
Score = 260 bits (665), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 197/310 (63%), Gaps = 3/310 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ +I G+ + V RL ++P+L+ AGP GTGKTT+ A+A E+ +
Sbjct: 19 WIEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREIYDDD 78
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+RE +ELNASD RGIDVVR++IK FA + + H+++ LDEAD++T+ AQ ALRRT
Sbjct: 79 WRENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYDHRIIFLDEADALTSDAQSALRRT 136
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +S++TRF L+CN SS+II+PIQSRCA+ RF+ L+D+ +++ + EE + +G
Sbjct: 137 MEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDDATEAQVREIAAEEGIEVTDDG 196
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A++F ADGDMR+A+N LQA V++E VF + P V+ MV + ++G F
Sbjct: 197 VDALVFAADGDMRKAINGLQAAAVMGETVDEETVFAITSTARPEEVEEMVEHAIDGDFTA 256
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L+ L D G + D+I L R +++ E + ++ G RI G LQ
Sbjct: 257 ARAALEDLLTDRGLAGGDVIDQLHRSAWQFDIPERATVRLLERLGEVDYRITTGANERLQ 316
Query: 314 LCGLLAKLSI 323
L G+LA L++
Sbjct: 317 LEGMLASLAL 326
>gi|429216858|ref|YP_007174848.1| DNA polymerase III, subunit gamma/tau [Caldisphaera lagunensis DSM
15908]
gi|429133387|gb|AFZ70399.1| DNA polymerase III, gamma/tau subunit [Caldisphaera lagunensis DSM
15908]
Length = 333
Score = 260 bits (664), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 142/321 (44%), Positives = 202/321 (62%), Gaps = 7/321 (2%)
Query: 8 SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
SS ++ W EKYRP + DI+ D RL ++ NMP+L+ AGPPGTGKTT+ ALA
Sbjct: 10 SSVTELLWTEKYRPRTLKDIINQQDITTRLMKFVQEKNMPHLLFAGPPGTGKTTAAHALA 69
Query: 68 HELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGA 127
H+L G +Y++ ++ELNASD+RGID +R K+K FA+ K T P K+V+LDEAD+MT+ A
Sbjct: 70 HDLYGESYQQFMLELNASDERGIDTIREKVKEFARSK-TPPEIPFKIVLLDEADNMTSDA 128
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
QQALRR ME+YS STRF LA N SKII+PIQSRCA RF+ L E+++ RL + +E
Sbjct: 129 QQALRRLMELYSASTRFILAANYPSKIIDPIQSRCAFFRFTSLKKEDVIDRLKYIADKEG 188
Query: 188 VPYVPEGLEAIIFTADGDMRQALNNLQAT-YSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
V Y + L+ I ++GDMR+A+N LQA+ Y G V E VFKV P + +M+
Sbjct: 189 VDYEEDALDIIFEISEGDMRKAINILQASAYLG--KVTSELVFKVVGMARPKDITDMIET 246
Query: 247 VLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRII--KNYEMAEHLKLEFMKEAGFAHMR 303
L+G F +A L++ + + G S D++ + R I + ++ + L++ G H R
Sbjct: 247 ALKGNFIEAREILRKVMIEYGLSGEDVVKQIHREIMGPDIKINDELRVLIADYLGEIHFR 306
Query: 304 ICDGVGSYLQLCGLLAKLSIV 324
I +G +QL LA LS++
Sbjct: 307 ISEGSDEDIQLSAFLAWLSMM 327
>gi|440291261|gb|ELP84530.1| replication factor C subunit, putative [Entamoeba invadens IP1]
Length = 328
Score = 260 bits (664), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 136/321 (42%), Positives = 197/321 (61%), Gaps = 3/321 (0%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
+S + IPWVEKYRP + D+VGN D + L P+L+L G PG GKTTSI
Sbjct: 10 TSHDMTTQAIPWVEKYRPKVLEDVVGNKDVIETLKSFRSSKQFPHLLLCGQPGIGKTTSI 69
Query: 64 LALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM 123
LA ELL Y+EAV+ELNASD+RGID +R IK F +KKV LP KVV+LDEADSM
Sbjct: 70 HCLARELLKDKYKEAVLELNASDERGIDTIRTTIKAFCEKKVMLPDNIPKVVILDEADSM 129
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T A QALRRTMEI+S +TRF LACN K+IEPIQSRC+ + F LS +E+++R+ +
Sbjct: 130 TTAAFQALRRTMEIHSKTTRFVLACNTPEKVIEPIQSRCSRLNFRPLSTDEVINRITKIA 189
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
+ E + + ++AI ++GD+R+A+N LQ + ENV++ D P +
Sbjct: 190 RLESMNIADDAIKAIEIISEGDLRKAVNALQTCAVLKGTITAENVYQRNDLPSADVILKA 249
Query: 244 VRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
+ N L+ FD+A + ++ LG+ D+I L ++I + +E ++++ + A +R
Sbjct: 250 LSNCLKKNFDEAVDEVSKISVLGFDGNDVIDMLVKMISKVDTSEEIRVKLYEAAAPFLIR 309
Query: 304 ICDGVGSYLQLCGLLAKLSIV 324
V SY+Q+ G+LA+ +V
Sbjct: 310 ---RVNSYVQVYGMLAQFCLV 327
>gi|150403344|ref|YP_001330638.1| replication factor C small subunit [Methanococcus maripaludis C7]
gi|166225156|sp|A6VJ61.1|RFCS_METM7 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|150034374|gb|ABR66487.1| Replication factor C [Methanococcus maripaludis C7]
Length = 315
Score = 260 bits (664), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 137/314 (43%), Positives = 198/314 (63%), Gaps = 6/314 (1%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + ++VG+ + + RL +MP+L+ +G PG GKTT+ LALA +L G
Sbjct: 4 PWVEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGE 63
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQAL 131
+RE +ELN+SD+RGIDV+R K+K FA+ K P G KV+ LDE+D++T+ AQ AL
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTK---PIGDAPFKVIFLDESDALTSDAQNAL 120
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTME YS+ RF L+CN SKII PIQSRCAI RFS L E+++ L + ++E +
Sbjct: 121 RRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKEISEKENLTLE 180
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
G++AII+ ++GDMR+A+N LQ + V +E V+KV + P +K M + L GK
Sbjct: 181 KGGIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTQLALNGK 240
Query: 252 FDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
F ++ L L D G S DI+ +FR + N +++E K+ ++ G RI +G
Sbjct: 241 FVESREQLYNLMIDWGMSGEDILIQIFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNE 300
Query: 311 YLQLCGLLAKLSIV 324
+QL LLAK+ I+
Sbjct: 301 RIQLSALLAKMGIL 314
>gi|448364052|ref|ZP_21552646.1| replication factor C small subunit [Natrialba asiatica DSM 12278]
gi|445644940|gb|ELY97947.1| replication factor C small subunit [Natrialba asiatica DSM 12278]
Length = 331
Score = 259 bits (663), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 129/313 (41%), Positives = 199/313 (63%), Gaps = 3/313 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ +I G+ + V RL ++P+L+ AGP GTGKTT+ A+A E+ G +
Sbjct: 21 WIEKYRPERLDEIKGHENIVPRLERYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYGDD 80
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+RE +ELNASD RGIDVVR++IK FA + + H+++ LDEAD++T+ AQ ALRRT
Sbjct: 81 WRENFLELNASDQRGIDVVRDRIKDFA--RASFGGYDHRIIFLDEADALTSDAQSALRRT 138
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +SN+TRF L+CN SS+II+PIQSRCA+ RF+ L+++ I +++ + + E + +G
Sbjct: 139 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQVREIAETEGIEVTDDG 198
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+++ ADGDMR+A+N LQA V++E VF + P V+ MV + + G F
Sbjct: 199 VDALVYAADGDMRKAINALQAAAVMGETVDEETVFAITATARPEEVEEMVDHAIAGDFTA 258
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L+ L D G + D+I L R +++ E + ++ G RI +G LQ
Sbjct: 259 ARAALEDLLTDRGLAGGDVIDQLHRSAWTFDIPEQATVRLLERLGEVDFRITEGANERLQ 318
Query: 314 LCGLLAKLSIVRE 326
L +LA L++ E
Sbjct: 319 LEAMLASLALEDE 331
>gi|15791090|ref|NP_280914.1| replication factor C small subunit [Halobacterium sp. NRC-1]
gi|169236842|ref|YP_001690042.1| replication factor C small subunit [Halobacterium salinarum R1]
gi|42559530|sp|Q9HN27.1|RFCS_HALSA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|226739141|sp|B0R7H7.1|RFCS_HALS3 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|10581691|gb|AAG20394.1| replication factor C small subunit [Halobacterium sp. NRC-1]
gi|167727908|emb|CAP14696.1| replication factor C small subunit [Halobacterium salinarum R1]
Length = 322
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 198/310 (63%), Gaps = 3/310 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WVEKYRP ++ D+VG+ D RL ++P+L+ AGP GTGKT S +++A EL G +
Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDD 71
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+++ +ELNASD+RGIDVVR++IK FA + + ++V+ LDEAD++T AQ ALRRT
Sbjct: 72 WQDNFLELNASDERGIDVVRDRIKDFA--RSSFGGHNYRVIFLDEADALTDDAQSALRRT 129
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +SN+TRF L+CN SSKII+PIQSRCA+ RF++L D+ + + L + + E + + +G
Sbjct: 130 MEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGLEHTDDG 189
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+++ ADGDMR+A+N LQA + VN+E V+ + P ++ MV L G F
Sbjct: 190 IDALVYAADGDMRRAINALQAASATGDSVNEETVYAITATARPEEIETMVTEALGGDFAA 249
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L L + G + DII + R + +++ E + + G A RI +G +Q
Sbjct: 250 ARATLDDLLTNRGLAGGDIIDQVHRSVWEFDVEEAAAVRLLDRLGEADYRIAEGANERVQ 309
Query: 314 LCGLLAKLSI 323
L LLA +++
Sbjct: 310 LEALLASVAL 319
>gi|433589372|ref|YP_007278868.1| DNA polymerase III, gamma/tau subunit [Natrinema pellirubrum DSM
15624]
gi|448335506|ref|ZP_21524650.1| replication factor C small subunit [Natrinema pellirubrum DSM
15624]
gi|433304152|gb|AGB29964.1| DNA polymerase III, gamma/tau subunit [Natrinema pellirubrum DSM
15624]
gi|445616896|gb|ELY70508.1| replication factor C small subunit [Natrinema pellirubrum DSM
15624]
Length = 330
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 130/313 (41%), Positives = 197/313 (62%), Gaps = 3/313 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + DI G+ D V RL ++P+L+ AGP GTGKTT+ A+A E+ +
Sbjct: 19 WIEKYRPELLADIKGHTDIVPRLENYVEQDDLPHLLFAGPAGTGKTTAAQAIAREVYDDD 78
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+RE +ELNASD RGIDVVR++IK FA + + H+++ LDEAD++T+ AQ ALRRT
Sbjct: 79 WRENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYSHRIIFLDEADALTSDAQSALRRT 136
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +SN+TRF L+CN SS+II+PIQSRCA+ RF+ L++ I +++ + E++ +G
Sbjct: 137 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTENAIEAQVREIAANEEIDVTDDG 196
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A++F ADGDMR+A+N LQA V++E VF + P V+ MV + ++G F
Sbjct: 197 VDALVFAADGDMRKAINGLQAAAVMGETVDEETVFAITATARPEEVEAMVEHAIDGDFTA 256
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L+ L + G + D+I L R +++ E + ++ G RI +G LQ
Sbjct: 257 ARAALEDLLTERGLAGGDVIDQLHRSAWEFDIPERATVRLLERLGEVDYRITEGANERLQ 316
Query: 314 LCGLLAKLSIVRE 326
L +LA L++ E
Sbjct: 317 LEAMLASLALENE 329
>gi|435850632|ref|YP_007312218.1| DNA polymerase III, gamma/tau subunit [Methanomethylovorans
hollandica DSM 15978]
gi|433661262|gb|AGB48688.1| DNA polymerase III, gamma/tau subunit [Methanomethylovorans
hollandica DSM 15978]
Length = 333
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 132/312 (42%), Positives = 193/312 (61%), Gaps = 6/312 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ DIVG +A+ARL + N+P+L+ +GPPG GKT + +++A EL +
Sbjct: 21 WIEKYRPMRLDDIVGQTEAIARLKSYVKSRNLPHLLFSGPPGVGKTATAVSIAKELFADS 80
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGAQQALR 132
+RE ELNASD+RGIDVVR KIK FA+ T P G K++ LDEAD++T+ AQ ALR
Sbjct: 81 WRENFTELNASDERGIDVVRTKIKSFAK---TSPIGGADFKIIFLDEADALTSDAQAALR 137
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME Y+N+ RF L+CN SSKIIEPIQSRCA+ RF LSD+ + R+ V E +
Sbjct: 138 RTMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRPLSDDAVTERVRFVASNEGIEVAT 197
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+G+EAI + A GDMR+A+N LQA V+++ ++K+ P + +++ L G F
Sbjct: 198 DGMEAIKYVAQGDMRKAINALQAASLVDNVVHKDTIYKITATARPEQITDLINTALSGNF 257
Query: 253 DDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A L + L D G S D++ ++R + N + + +E + G RI +G
Sbjct: 258 MAARKYLDELLLDQGLSGEDVVGQIYRAMFNISIPQEKMVELIDVIGEVDFRIAEGANER 317
Query: 312 LQLCGLLAKLSI 323
+QL L+A ++
Sbjct: 318 IQLEALIAHFTL 329
>gi|118431491|ref|NP_147997.2| replication factor C small subunit [Aeropyrum pernix K1]
gi|150421641|sp|Q9YBS7.3|RFCS_AERPE RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|116062816|dbj|BAA80521.2| replication factor C small subunit [Aeropyrum pernix K1]
Length = 325
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 144/321 (44%), Positives = 202/321 (62%), Gaps = 7/321 (2%)
Query: 8 SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
SS ++ WVEKYRP + DIV V RL + NMP+L+ AGPPGTGKTT+ ALA
Sbjct: 2 SSVLEMLWVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALA 61
Query: 68 HELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGA 127
H+L G NYR+ ++ELNASD+RGI+V+R K+K FA+ + T P K+V+LDEAD+MT+ A
Sbjct: 62 HDLFGENYRQYMLELNASDERGINVIREKVKEFARSR-TPPEIPFKIVLLDEADNMTSDA 120
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
QQALRR ME+YS+ TRF L N SKII+PIQSRCA RF LS ++++ RL + + E
Sbjct: 121 QQALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENEG 180
Query: 188 VPYVPEGLEAIIFTADGDMRQALNNLQ-ATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
V Y E L+AI ++GDMR+A+N LQ A+Y G V + V++V P V+ M+
Sbjct: 181 VDYEEEALDAIYEISEGDMRKAINVLQAASYLG--KVTVDAVYRVVGMAKPREVREMLAT 238
Query: 247 VLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYE--MAEHLKLEFMKEAGFAHMR 303
L+G F A S L++ + + G S D+ + R + + E M E L++ G H R
Sbjct: 239 ALKGDFTAARSLLRKIMIEYGMSGEDVARQIHRELFSTELKMPEELRVLAADYLGEVHYR 298
Query: 304 ICDGVGSYLQLCGLLAKLSIV 324
+ +G +QL LA L+++
Sbjct: 299 LVEGSDDDIQLSAFLAWLTMM 319
>gi|159904872|ref|YP_001548534.1| replication factor C small subunit [Methanococcus maripaludis C6]
gi|226739142|sp|A9A6K6.1|RFCS_METM6 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|159886365|gb|ABX01302.1| Replication factor C [Methanococcus maripaludis C6]
Length = 315
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 138/314 (43%), Positives = 198/314 (63%), Gaps = 6/314 (1%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + ++VG+ + + RL +MP+L+ +G PG GKTT+ LALA +L G
Sbjct: 4 PWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGD 63
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQAL 131
+RE +ELN+SD+RGIDV+R K+K FA+ K P G KV+ LDE+D++T+ AQ AL
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTK---PIGDAPFKVIFLDESDALTSDAQNAL 120
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTME YS+ RF L+CN SKII PIQSRCAI RFS L E+++ L + ++E +
Sbjct: 121 RRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLE 180
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
G++AII+ ++GDMR+A+N LQ + V +E V+KV + P +K M + L GK
Sbjct: 181 KGGIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTQLALNGK 240
Query: 252 FDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
F +A L L D G S DI+ +FR + N +++E K+ ++ G RI +G
Sbjct: 241 FVEAREQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNE 300
Query: 311 YLQLCGLLAKLSIV 324
+QL LLAK+ I+
Sbjct: 301 RIQLSALLAKMGIL 314
>gi|134046237|ref|YP_001097722.1| replication factor C small subunit [Methanococcus maripaludis C5]
gi|166225155|sp|A4FZ74.1|RFCS_METM5 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|132663862|gb|ABO35508.1| replication factor C small subunit [Methanococcus maripaludis C5]
Length = 315
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 136/312 (43%), Positives = 196/312 (62%), Gaps = 2/312 (0%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + ++VG+ + + RL +MP+L+ +G PG GKTT+ LALA +L G
Sbjct: 4 PWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGE 63
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
+RE +ELN+SD+RGIDV+R K+K FA+ K + KV+ LDE+D++T+ AQ ALRR
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTK-PIGDAPFKVIFLDESDALTSDAQNALRR 122
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
TME YS+ RF L+CN SKII PIQSRCAI RFS L E+++ L + ++E +
Sbjct: 123 TMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLEKG 182
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
G++AII+ ++GDMR+A+N LQ + V +E V+KV + P +K M L GKF
Sbjct: 183 GIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTHLALNGKFV 242
Query: 254 DACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
+A L L D G S DI+ +FR + N +++E K+ ++ G RI +G +
Sbjct: 243 EAKEQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERI 302
Query: 313 QLCGLLAKLSIV 324
QL LLAK+ I+
Sbjct: 303 QLSALLAKMGIL 314
>gi|448381294|ref|ZP_21561497.1| replication factor C small subunit [Haloterrigena thermotolerans
DSM 11522]
gi|445663102|gb|ELZ15856.1| replication factor C small subunit [Haloterrigena thermotolerans
DSM 11522]
Length = 330
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 130/313 (41%), Positives = 197/313 (62%), Gaps = 3/313 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + DI G+ D V RL ++P+L+ AGP GTGKTT+ A+A E+ +
Sbjct: 19 WIEKYRPELLADIKGHTDIVPRLENYVEQDDLPHLLFAGPAGTGKTTAAQAIAREVYDDD 78
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+RE +ELNASD RGIDVVR++IK FA + + H+++ LDEAD++T+ AQ ALRRT
Sbjct: 79 WRENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYSHRIIFLDEADALTSDAQSALRRT 136
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +SN+TRF L+CN SS+II+PIQSRCA+ RF+ L+++ I +++ + E + +G
Sbjct: 137 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQVREIAANEGIDVTDDG 196
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A++F ADGDMR+A+N LQA V++E VF + P V+ MV + ++G F
Sbjct: 197 VDALVFAADGDMRKAINGLQAAAVMGETVDEETVFAITATARPEEVEAMVEHAIDGDFTA 256
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L+ L + G + D+I L R +++ E + ++ G RI +G LQ
Sbjct: 257 ARAALEDLLTERGLAGGDVIDQLHRSAWEFDVPERATVRLLERLGEVDYRITEGANERLQ 316
Query: 314 LCGLLAKLSIVRE 326
L +LA L++ E
Sbjct: 317 LEAMLASLALENE 329
>gi|45357990|ref|NP_987547.1| replication factor C small subunit [Methanococcus maripaludis S2]
gi|50400879|sp|Q6M044.1|RFCS_METMP RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|44920747|emb|CAF29983.1| Replication factor C, small subunit [Methanococcus maripaludis S2]
Length = 315
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 135/312 (43%), Positives = 197/312 (63%), Gaps = 2/312 (0%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + ++VG+ + + RL +MP+L+ +G PG GKTT+ LALA +L G
Sbjct: 4 PWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGD 63
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
+RE +ELN+SD+RGIDV+R K+K FA+ K + KV+ LDE+D++T+ AQ ALRR
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTK-PIGDAPFKVIFLDESDALTSDAQNALRR 122
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
TME YS+ RF L+CN SKII PIQSRCAI RFS L E+++ L + ++E +
Sbjct: 123 TMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKENLNLEKG 182
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
G++AII+ ++GDMR+A+N LQ + + +E V+KV + P +K M + L GKF
Sbjct: 183 GIDAIIYVSEGDMRKAINVLQTAAAVSDEITEEIVYKVASKARPDEIKKMTQLALNGKFV 242
Query: 254 DACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
+A L L D G S DI+ +FR + N +++E K+ ++ G RI +G +
Sbjct: 243 EAREQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERI 302
Query: 313 QLCGLLAKLSIV 324
QL LLAK+ I+
Sbjct: 303 QLSALLAKMGIL 314
>gi|340623615|ref|YP_004742068.1| replication factor C small subunit [Methanococcus maripaludis X1]
gi|339903883|gb|AEK19325.1| replication factor C small subunit [Methanococcus maripaludis X1]
Length = 315
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 135/312 (43%), Positives = 197/312 (63%), Gaps = 2/312 (0%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + ++VG+ + + RL +MP+L+ +G PG GKTT+ LALA +L G
Sbjct: 4 PWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGE 63
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
+RE +ELN+SD+RGIDV+R K+K FA+ K + KV+ LDE+D++T+ AQ ALRR
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTK-PIGDAPFKVIFLDESDALTSDAQNALRR 122
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
TME YS+ RF L+CN SKII PIQSRCAI RFS L E+++ L + ++E +
Sbjct: 123 TMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKENLNLEKG 182
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
G++AII+ ++GDMR+A+N LQ + + +E V+KV + P +K M + L GKF
Sbjct: 183 GIDAIIYVSEGDMRKAINVLQTAAAVSDEITEEIVYKVASKARPDEIKKMTQLALNGKFV 242
Query: 254 DACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
+A L L D G S DI+ +FR + N +++E K+ ++ G RI +G +
Sbjct: 243 EAREQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERI 302
Query: 313 QLCGLLAKLSIV 324
QL LLAK+ I+
Sbjct: 303 QLSALLAKMGIL 314
>gi|435845437|ref|YP_007307687.1| DNA polymerase III, gamma/tau subunit [Natronococcus occultus SP4]
gi|433671705|gb|AGB35897.1| DNA polymerase III, gamma/tau subunit [Natronococcus occultus SP4]
Length = 330
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 128/313 (40%), Positives = 199/313 (63%), Gaps = 3/313 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ +I G+ D V RL ++P+L+ AGP GTGKTT+ A+A E+ +
Sbjct: 19 WIEKYRPERLDEIKGHEDIVPRLQRYVEQNDLPHLLFAGPAGTGKTTAAQAIAREVYDDD 78
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+RE +ELNASD RGIDVVR++IK FA + + H+++ LDEAD++T+ AQ ALRRT
Sbjct: 79 WRENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYDHRIIFLDEADALTSDAQSALRRT 136
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +S++TRF L+CN SS+II+PIQSRCA+ RF+ L+++ + +++ + EE + +G
Sbjct: 137 MEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDALEAQIREIATEEGIEVTDDG 196
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+I+ ADGDMR+A+N LQA V++E VF + P V+ MV ++G F
Sbjct: 197 VDALIYAADGDMRKAINGLQAAAVMGEVVDEETVFAITSTARPEEVEAMVDQAIDGDFTA 256
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L+ L + G + D+I L R ++++E + ++ G RI +G LQ
Sbjct: 257 ARAALEDLLTERGLAGGDVIDQLHRSAWQFDISETATVRLLERLGEVDYRITEGANERLQ 316
Query: 314 LCGLLAKLSIVRE 326
L +LA L++ E
Sbjct: 317 LEAMLASLALENE 329
>gi|444720577|gb|ELW61359.1| Replication factor C subunit 2 [Tupaia chinensis]
Length = 197
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 115/187 (61%), Positives = 151/187 (80%)
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
MEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D ++L+RLM V+++E V Y +G
Sbjct: 1 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMNVIEKENVQYTDDG 60
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
LEAIIFTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL VK M+++ + D+
Sbjct: 61 LEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVSANIDE 120
Query: 255 ACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQL 314
A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+ HM++ +GV S LQ+
Sbjct: 121 AYKILAHLWHLGYSPEDIIGNIFRMCKTFQMAEYLKLEFIKEIGYTHMKVAEGVNSLLQM 180
Query: 315 CGLLAKL 321
GLLA+L
Sbjct: 181 AGLLARL 187
>gi|336252796|ref|YP_004595903.1| Replication factor C small subunit [Halopiger xanaduensis SH-6]
gi|335336785|gb|AEH36024.1| Replication factor C small subunit [Halopiger xanaduensis SH-6]
Length = 336
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 197/310 (63%), Gaps = 3/310 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ +I G+ D + RL ++P+L+ AGP GTGKTT+ A+A E+ +
Sbjct: 25 WIEKYRPERLDEIKGHEDIIPRLKNYVEQDDLPHLMFAGPAGTGKTTAAQAIAREIYDDD 84
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+RE +ELNASD RGIDVVR++IK FA + + H+++ LDEAD++T+ AQ ALRRT
Sbjct: 85 WRENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYDHRIIFLDEADALTSDAQSALRRT 142
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +SN+TRF L+CN SS+II+PIQSRCA+ RF+ L+D I +++ + ++ + +G
Sbjct: 143 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDNAIEAQVREIAADQDIEVTDDG 202
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+++ ADGDMR+A+N LQA V++E VF + P V+ MV + ++G F
Sbjct: 203 VDALVYAADGDMRKAINALQAAAVMGETVDEETVFAITATARPEEVEEMVGHAIDGDFTA 262
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L+ L D G + D+I L R +++ E + ++ G RI +G LQ
Sbjct: 263 ARAALEDLLTDRGLAGGDVIDQLHRSAWEFDIPEQATVRLLERLGEVDYRITEGANERLQ 322
Query: 314 LCGLLAKLSI 323
L +LA L++
Sbjct: 323 LEAMLASLAL 332
>gi|302348723|ref|YP_003816361.1| Replication factor C small subunit [Acidilobus saccharovorans
345-15]
gi|302329135|gb|ADL19330.1| Replication factor C small subunit [Acidilobus saccharovorans
345-15]
Length = 329
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 139/321 (43%), Positives = 203/321 (63%), Gaps = 5/321 (1%)
Query: 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
S++ ++ W EKYRP + +IV + V RL + NMP+L+ AGPPGTGKTT+ AL
Sbjct: 2 STAIEELLWTEKYRPRSLKEIVNQKEIVERLSKFVAEKNMPHLLFAGPPGTGKTTAAHAL 61
Query: 67 AHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG 126
AH+L G NY + ++ELNASD+RGID +R K+K FA+ K T P K+V+LDEAD+MTA
Sbjct: 62 AHDLYGDNYTQYMLELNASDERGIDTIREKVKEFARSK-TPPDIPFKIVLLDEADNMTAD 120
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQQALRR ME+YS +TRF LA N SKII+PIQSRCA RF+ L ++++ RL + ++E
Sbjct: 121 AQQALRRLMELYSANTRFILAANFPSKIIDPIQSRCAFFRFTPLGKDDVVGRLRYIAEKE 180
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
V Y + LEAI ++GDMR+A+N LQ T + V+ ++V+KV P ++ MV
Sbjct: 181 NVKYDEDALEAIYDISEGDMRKAINILQ-TAASLGKVDVDSVYKVVGMARPKDIREMVEE 239
Query: 247 VLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRII--KNYEMAEHLKLEFMKEAGFAHMR 303
L+G F A L++ + + G S D++ + R + + ++ E L++ G H R
Sbjct: 240 ALKGDFTGARELLRKVMIEYGLSGEDVVRQIHRELFSNDLKIPEELRVMIADYLGEIHYR 299
Query: 304 ICDGVGSYLQLCGLLAKLSIV 324
I +G +QL LA L+++
Sbjct: 300 IVEGSDDDIQLSAFLAWLAMM 320
>gi|298675837|ref|YP_003727587.1| replication factor C [Methanohalobium evestigatum Z-7303]
gi|298288825|gb|ADI74791.1| Replication factor C [Methanohalobium evestigatum Z-7303]
Length = 318
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 131/312 (41%), Positives = 198/312 (63%), Gaps = 6/312 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP K+ DIVG +A+ RL N+P+L+ +GPPG GKT + +A+A EL G
Sbjct: 6 WIEKYRPFKLDDIVGQGEAIKRLKSYISTNNLPHLLFSGPPGVGKTAAAVAIAKELFGDA 65
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGAQQALR 132
+ + ELNASD+RGIDVVR KIK F++ T P G K++ LDEAD++T AQ ALR
Sbjct: 66 WHQNFTELNASDERGIDVVRTKIKDFSK---TSPIGGADFKIIFLDEADALTPDAQSALR 122
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME Y+N+ RF L+CN SSKIIEPIQSRCA+ RF LS E + R+ + ++E +
Sbjct: 123 RTMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRSLSYEAVEKRVRYIAEQEGLQISE 182
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+G+EAI + + GDMR+A+N LQA+ ++++ ++K+ HP ++ +V+ L+G F
Sbjct: 183 DGVEAIKYVSQGDMRKAINALQASALIDDVIDKDTIYKITATAHPEEIEELVQKALDGNF 242
Query: 253 DDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A +++L + G S D++ ++R I N ++ E L +E + + G R+ +G
Sbjct: 243 KAARETMEKLMSEQGLSGEDVVGQIYRAIFNLDIPEKLMVELVDKIGEIDFRLTEGANER 302
Query: 312 LQLCGLLAKLSI 323
+QL LLA ++
Sbjct: 303 IQLEALLAHFTL 314
>gi|327401750|ref|YP_004342589.1| replication factor C small subunit [Archaeoglobus veneficus SNP6]
gi|327317258|gb|AEA47874.1| Replication factor C small subunit [Archaeoglobus veneficus SNP6]
Length = 322
Score = 257 bits (656), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 136/313 (43%), Positives = 198/313 (63%), Gaps = 6/313 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WVEKYRP + ++VG + + RL N+P+L+ AGPPGTGKT S +ALA +L G N
Sbjct: 8 WVEKYRPRTLKEVVGQEEVIQRLMGYVERKNIPHLLFAGPPGTGKTASAIALARDLFGEN 67
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQALR 132
+R+ +E+NASD+RGIDVVR+KIK FA+ T P G K++ LDEAD++T AQ ALR
Sbjct: 68 WRDNFIEMNASDERGIDVVRHKIKEFAR---TAPIGDAPFKIIFLDEADALTPDAQAALR 124
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME+YS RF L+CN S+IIEPIQSRCA+ +F + E + RL+ + + E V
Sbjct: 125 RTMEMYSKICRFILSCNYVSRIIEPIQSRCAVFKFRPVPPEAMRKRLLEICENEGVKITE 184
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GLEA+I+ ++GD R+A+N LQ + + V+ E ++++ P + N++ LEGKF
Sbjct: 185 DGLEALIYVSNGDFRKAINALQGAAALGKVVDAEAIYQITATARPEELANLLETALEGKF 244
Query: 253 DDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
+A S L +L + G S D+++ LFR I + M E +K+ + + G R+ +G
Sbjct: 245 MEARSILDKLMIEYGMSGEDVVSQLFREILSSGMDEKMKVLLIDKLGEIDFRLTEGAHER 304
Query: 312 LQLCGLLAKLSIV 324
+QL LA LS V
Sbjct: 305 IQLDAYLAYLSTV 317
>gi|257387186|ref|YP_003176959.1| replication factor C small subunit [Halomicrobium mukohataei DSM
12286]
gi|257169493|gb|ACV47252.1| Replication factor C [Halomicrobium mukohataei DSM 12286]
Length = 322
Score = 257 bits (656), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 194/310 (62%), Gaps = 3/310 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + D+VG+ V RL ++ +++ AGP GTGKTTS A+A EL G +
Sbjct: 13 WIEKYRPQTLSDVVGHETIVERLQSYVDRNDLSHMLFAGPAGTGKTTSATAIARELYGDD 72
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++E +ELNASD+RGIDVVR++IK FA + + ++++ LDEAD++T+ AQ ALRRT
Sbjct: 73 WQEHFLELNASDERGIDVVRDRIKSFA--RTSFGGVDYRIIFLDEADALTSDAQSALRRT 130
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +SN+ RF ++CN SS+II+PIQSRCA+ RFS L DE + + + + EE + +G
Sbjct: 131 MEQFSNNVRFIMSCNYSSQIIDPIQSRCAVFRFSPLGDEAVEAEIRHIADEEGIELTDDG 190
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+++ A GDMR+A+N LQA V++E VF + P ++ MV++ ++G F
Sbjct: 191 VDALVYAAGGDMRKAINGLQAASVSGDVVDEEAVFAITSTARPEVIQGMVQDAIDGDFTA 250
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A S L L D G + DII L R I +++ + + + G RI +G +Q
Sbjct: 251 ARSQLDDLITDEGIAGGDIIDQLHRSIWEFDVPDEQAVRILDRVGETDYRITEGANERIQ 310
Query: 314 LCGLLAKLSI 323
L +LA LS+
Sbjct: 311 LEAMLASLSL 320
>gi|284163322|ref|YP_003401601.1| replication factor C [Haloterrigena turkmenica DSM 5511]
gi|284012977|gb|ADB58928.1| Replication factor C [Haloterrigena turkmenica DSM 5511]
Length = 330
Score = 257 bits (656), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 197/310 (63%), Gaps = 3/310 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ +I G+ + V RL +PNL+ AGP GTGKTT+ + +A E+ G +
Sbjct: 19 WIEKYRPERLDEIKGHENIVPRLKQYVERDELPNLMFAGPAGTGKTTAAVGIAREIYGDD 78
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+RE +ELNASD RGIDVVR++IK FA + + H+++ LDEAD++T+ AQ ALRRT
Sbjct: 79 WRENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYSHRIIFLDEADALTSDAQSALRRT 136
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +SN+TRF L+CN SS+II+PIQSRCA+ RF+ L+++ I +++ + E + +G
Sbjct: 137 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQVREIAANEGIEVTDDG 196
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+++ ADGDMR+A+N LQA V++E VF + P V+ MV + ++G F
Sbjct: 197 VDALVYAADGDMRKAINGLQAAAVMGETVDEETVFAITATARPEEVEKMVEHAIDGDFTA 256
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L+ L + G + D+I L R +++ E + ++ G RI +G LQ
Sbjct: 257 ARAALEDLLTERGLAGGDVIDQLHRSAWEFDIPEMATVRLLERLGEVDYRITEGANERLQ 316
Query: 314 LCGLLAKLSI 323
L +LA L++
Sbjct: 317 LEAMLASLAL 326
>gi|119719185|ref|YP_919680.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
gi|150415673|sp|A1RWU7.1|RFCS_THEPD RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|119524305|gb|ABL77677.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
Length = 325
Score = 256 bits (655), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 142/320 (44%), Positives = 201/320 (62%), Gaps = 9/320 (2%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WVEKYRP + +IV + V RL ++ NMP+L+ AGPPGTGKTT+ LALAH+L G +
Sbjct: 6 WVEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDLYGES 65
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQALR 132
+R+ +ELNASD+RGIDV+R++IK +A+ TLP G K+V+LDEAD+MT AQQALR
Sbjct: 66 WRDNTLELNASDERGIDVIRSRIKDYAR---TLPIGDVPFKLVILDEADNMTGDAQQALR 122
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME++S +TRF L N +SKIIEPIQSRCA+ RF L + RL + Q+E +
Sbjct: 123 RTMELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDAFQRLRWIAQQEGITVDD 182
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
LEAI + GD+R+A+N LQA + R V +E V+ + P V+ M+ + L+G
Sbjct: 183 GALEAIWEESQGDLRKAINTLQAASAISRNVTEEVVYAALGRVKPKEVREMIESALKGNL 242
Query: 253 DDACSGLK-QLYDLGYSPTDIITTLFRII---KNYEMAEHLKLEFMKEAGFAHMRICDGV 308
+A L+ LY+ G S DII + R + K+ + + E + G + RI +G
Sbjct: 243 LEARDKLRLLLYNYGLSGVDIIRFIHREVLSQKSVRLDDATLAELLVLVGETNYRIVEGS 302
Query: 309 GSYLQLCGLLAKLSIVRETA 328
+QL LL+KL++V + A
Sbjct: 303 DDEIQLMALLSKLALVSKKA 322
>gi|448357101|ref|ZP_21545808.1| replication factor C small subunit [Natrialba chahannaoensis JCM
10990]
gi|445650274|gb|ELZ03200.1| replication factor C small subunit [Natrialba chahannaoensis JCM
10990]
Length = 339
Score = 256 bits (655), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 197/310 (63%), Gaps = 3/310 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ +I G+ + V RL ++P+L+ AGP GTGKTT+ A+A E+ +
Sbjct: 29 WIEKYRPERLDEIKGHENIVPRLQRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYDDD 88
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+RE +ELNASD RGIDVVR++IK FA + + H+++ LDEAD++T+ AQ ALRRT
Sbjct: 89 WRENFLELNASDQRGIDVVRDRIKDFA--RASFGGYDHRIIFLDEADALTSDAQSALRRT 146
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +SN+TRF L+CN SS+II+PIQSRCA+ RF++L++ I +++ + ++ + +G
Sbjct: 147 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTQLTETAIEAQVREIAADQDIEVTDDG 206
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+++ ADGDMR+A+N LQA V++E VF + P V+ MV + G F
Sbjct: 207 VDALVYAADGDMRKAINALQAAAVMGETVDEETVFAITATARPEEVEQMVDQAIAGDFTA 266
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L+ L D G + D+I L R +++ E + +++ G RI +G LQ
Sbjct: 267 ARASLEDLLTDRGLAGGDVIDQLHRSAWEFDIPEQETVRLLEQLGEVDFRITEGANERLQ 326
Query: 314 LCGLLAKLSI 323
L +LA L++
Sbjct: 327 LEAMLASLAL 336
>gi|448450551|ref|ZP_21592370.1| replication factor C small subunit [Halorubrum litoreum JCM 13561]
gi|448522065|ref|ZP_21618330.1| replication factor C small subunit [Halorubrum distributum JCM
10118]
gi|445702339|gb|ELZ54293.1| replication factor C small subunit [Halorubrum distributum JCM
10118]
gi|445811665|gb|EMA61668.1| replication factor C small subunit [Halorubrum litoreum JCM 13561]
Length = 327
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 136/312 (43%), Positives = 198/312 (63%), Gaps = 7/312 (2%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARL-GIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
W+EKYRP + DI G + V RL IA+D ++P+L+ +GP G GKTT+ A+A E+ G
Sbjct: 18 WIEKYRPQTLDDIHGQEEIVERLQSYIAQD-DVPHLLFSGPAGVGKTTAATAIAREIYGE 76
Query: 74 -NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
N+R +ELNASD RGIDVVR++IK FA+ G ++V LDE+DS+T AQ ALR
Sbjct: 77 DNWRGNFLELNASDQRGIDVVRDRIKGFARSSF---GGDFRIVFLDESDSLTDDAQSALR 133
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME +S++TRF L+CN SSKII+PIQSRCA+ RFS LSDE + + + E++
Sbjct: 134 RTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAEEIEVTD 193
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
G++A+++ ADGDMR+A+N+LQA + V++E V+ + P +++MV + L G F
Sbjct: 194 AGVDALVYAADGDMRRAINSLQAAATTGDVVDEEAVYAITATARPEEIESMVTDALNGDF 253
Query: 253 DDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A S L L + G + D+I L R + +E++E + M+ G A RI +G
Sbjct: 254 ARARSTLDTLLTETGMAGGDVIDQLHRSVWEFELSEREAVRLMERIGEADYRIAEGANEQ 313
Query: 312 LQLCGLLAKLSI 323
+QL LLA L++
Sbjct: 314 VQLESLLAALTL 325
>gi|429191613|ref|YP_007177291.1| DNA polymerase III, subunit gamma/tau [Natronobacterium gregoryi
SP2]
gi|448325250|ref|ZP_21514645.1| replication factor C small subunit [Natronobacterium gregoryi SP2]
gi|429135831|gb|AFZ72842.1| DNA polymerase III, gamma/tau subunit [Natronobacterium gregoryi
SP2]
gi|445616034|gb|ELY69670.1| replication factor C small subunit [Natronobacterium gregoryi SP2]
Length = 330
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 194/310 (62%), Gaps = 3/310 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ +I G+ + V RL ++P+L+ AGP G GKT S A+A E+ G +
Sbjct: 19 WIEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGVGKTASAQAIAREVYGDD 78
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++E +ELNASD RGIDVVR++IK FA + + H+++ LDEAD++T+ AQ ALRRT
Sbjct: 79 WKENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYDHRIIFLDEADALTSDAQSALRRT 136
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +SN+TRF L+CN SS+II+PIQSRCA+ RF+ L D+ + +++ + E + G
Sbjct: 137 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELGDDAVETQIREIAATETIELTDNG 196
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+++ ADGDMR+A+N LQA V++E VF + P V+ MV + ++G F
Sbjct: 197 VDALVYAADGDMRKAINGLQAAAVMGEVVDEETVFAITSTARPEEVEEMVEHAIDGDFTA 256
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L+ L D G + D+I L R +++ E + ++ G RI +G LQ
Sbjct: 257 ARAALEDLLMDRGLAGGDVIDQLHRSAWEFDIPERATVRLLERLGEVDYRITEGANERLQ 316
Query: 314 LCGLLAKLSI 323
L +LA L++
Sbjct: 317 LEAMLASLAL 326
>gi|257052996|ref|YP_003130829.1| replication factor C small subunit [Halorhabdus utahensis DSM
12940]
gi|256691759|gb|ACV12096.1| Replication factor C [Halorhabdus utahensis DSM 12940]
Length = 326
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 128/314 (40%), Positives = 195/314 (62%), Gaps = 3/314 (0%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
M+ + S+ + W+EKYRP + DI G+ V RLG ++ +++ AGP G GKT
Sbjct: 1 MSEAESARAGRQEVWIEKYRPQTLEDIAGHEAIVERLGSYVSRNDLSHMLFAGPAGVGKT 60
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
T+ A+A EL G ++ E +ELNASD+RGIDVVR+++K FA + + ++++ LDEA
Sbjct: 61 TAATAIARELYGEDWEENFLELNASDERGIDVVRDRVKSFA--RTSFGGYDYRIIFLDEA 118
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D++TA AQ ALRRTME +SN+ RF L+CN SS+II+PIQSRCA+ RFS L+DE + +++
Sbjct: 119 DALTADAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADEAVEAQIR 178
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+ QEE + +G+EA+++ A GDMR+A+N LQA VN+E VF++ P +
Sbjct: 179 QIAQEEVIDVTEDGIEALVYVAGGDMRKAINGLQAASMSGDTVNEEAVFEITSTARPEDI 238
Query: 241 KNMVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGF 299
+ MV L+G F A S L L + G + DII L R + +++++ + + G
Sbjct: 239 REMVDLALDGDFTAARSRLDTLLTEEGIAGGDIIDQLHRTVWEFDLSDAAAVRVLDRVGE 298
Query: 300 AHMRICDGVGSYLQ 313
A RI +G +Q
Sbjct: 299 ADYRITEGASERIQ 312
>gi|448376175|ref|ZP_21559459.1| replication factor C small subunit [Halovivax asiaticus JCM 14624]
gi|445658193|gb|ELZ11016.1| replication factor C small subunit [Halovivax asiaticus JCM 14624]
Length = 329
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 195/310 (62%), Gaps = 3/310 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + D+ G+ + V RL ++P+L+ AGP G GKT S A+A EL G +
Sbjct: 18 WIEKYRPESLDDVKGHENIVPRLRKYVEQDDLPHLMFAGPAGVGKTASAGAIARELYGED 77
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+RE +ELNASD+RGIDVVR++IK FA + + +++++ LDEAD++T+ AQ ALRRT
Sbjct: 78 WREHFLELNASDERGIDVVRDRIKNFA--RSSFGGVEYRIIFLDEADALTSDAQSALRRT 135
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +S++TRF L+CN SS+II+PIQSRCA+ RF+ LSDE I ++ + + E + +G
Sbjct: 136 MEQFSHNTRFILSCNYSSQIIDPIQSRCAVFRFTELSDEAIEAQTREIAETEGISLTDDG 195
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+++ A GDMR+A+N LQA V++E VF + P V+ MV + G F
Sbjct: 196 VDALVYAAAGDMRKAINGLQAAAVMGEEVDEEAVFAITSTARPEEVERMVDQAIGGDFTA 255
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L+ L D G + D+I L R +++ EH + ++ G RI +G LQ
Sbjct: 256 ARATLEDLLTDRGLAGGDVIDQLHRSAWEFDLGEHETVRLLERLGEVDYRITEGANERLQ 315
Query: 314 LCGLLAKLSI 323
L +LA L++
Sbjct: 316 LEAMLAHLAL 325
>gi|448712798|ref|ZP_21701827.1| replication factor C small subunit [Halobiforma nitratireducens JCM
10879]
gi|445790224|gb|EMA40893.1| replication factor C small subunit [Halobiforma nitratireducens JCM
10879]
Length = 335
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 197/310 (63%), Gaps = 3/310 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ DI G+ + V RL ++P+L+ AGP GTGKTT+ A+A E+ +
Sbjct: 19 WIEKYRPERLDDIKGHENIVPRLTRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYEDD 78
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++E +ELNASD RGIDVVR++IK FA + + H+++ LDEAD++T+ AQ ALRRT
Sbjct: 79 WQENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYDHRIIFLDEADALTSDAQSALRRT 136
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +S++TRF L+CN SS+II+PIQSRCA+ RF+ L+D+ I +++ + EE + +G
Sbjct: 137 MEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDDAIEAQVREIATEEGIELTDDG 196
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+++ ADGDMR+ +N LQA V+++ VF + P V+ MV + ++G F
Sbjct: 197 VDALVYAADGDMRKGINGLQAAAVMGETVDEDTVFAITSTARPEEVEEMVDHAIDGDFTA 256
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L+ L D G + D+I L R +++ E + ++ G RI +G LQ
Sbjct: 257 ARAALEDLLMDRGLAGGDVIDQLHRSAWEFDIPEQATVRLLERLGEVDYRITEGANERLQ 316
Query: 314 LCGLLAKLSI 323
L +LA L++
Sbjct: 317 LEAMLASLAL 326
>gi|448408398|ref|ZP_21574193.1| replication factor C small subunit [Halosimplex carlsbadense 2-9-1]
gi|445674253|gb|ELZ26797.1| replication factor C small subunit [Halosimplex carlsbadense 2-9-1]
Length = 327
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 129/322 (40%), Positives = 197/322 (61%), Gaps = 3/322 (0%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
+ S S + + W+EKYRP + +IVG D V RL ++ + + +GP G GKTTS
Sbjct: 6 TDSGSRAGREEVWIEKYRPQTLDEIVGQEDIVERLQSYVDRNDLSHFMFSGPAGIGKTTS 65
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
A+A EL G ++R+ +ELNASD+RGIDVVR++IK FA + + +++++ LDEAD+
Sbjct: 66 ATAIARELYGDDWRDNFLELNASDERGIDVVRDRIKNFA--RTSFGGYEYRIIFLDEADA 123
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
+T+ AQ ALRRTME +SN+ RF L+CN SS+II+PIQSRCA+ RF+ LSDE + + +
Sbjct: 124 LTSDAQGALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFAPLSDEAVAEEMRHI 183
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
EE + + +GL+A+++ ADGDMR+A+N LQA V++E V+ + P +K
Sbjct: 184 AGEEGIEFTDDGLDALVYAADGDMRKAINALQAASVTGDVVDEEAVYALTSTAKPEEIKE 243
Query: 243 MVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAH 301
MV L G F A S L +L + G + D+I L R + +++ + + + G
Sbjct: 244 MVDQALAGDFTAARSTLDRLLTEEGIAGGDVIDQLHRSVWEFDLDDEAAVRLLDRIGETE 303
Query: 302 MRICDGVGSYLQLCGLLAKLSI 323
RI G +QL LLA +++
Sbjct: 304 YRITTGANERIQLEALLASVAL 325
>gi|448417391|ref|ZP_21579327.1| replication factor C small subunit [Halosarcina pallida JCM 14848]
gi|445677879|gb|ELZ30375.1| replication factor C small subunit [Halosarcina pallida JCM 14848]
Length = 329
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 126/301 (41%), Positives = 192/301 (63%), Gaps = 3/301 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + D+ G D V RL ++P+L+ AGP G GKTTS A+A + G +
Sbjct: 16 WIEKYRPQTLEDVYGQEDIVDRLRSYIEQDDLPHLLFAGPAGVGKTTSATAIARAVYGDD 75
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+R +ELNASD+RGIDVVR++IK FA + + ++++ LDEADS+T+ AQ ALRRT
Sbjct: 76 WRGNFLELNASDERGIDVVRDRIKNFA--RASFGGYDYRIIFLDEADSLTSDAQSALRRT 133
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +S++TRF L+CN SSKII+PIQSRCA+ RFS L D+ + ++ + + E + +G
Sbjct: 134 MEQFSDNTRFVLSCNYSSKIIDPIQSRCAVFRFSPLGDDAVRKQVEAIAETEGIELTEDG 193
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
L+A+++ A GDMR+A+N+LQA + V++E V+ + P ++ MV++ ++G+F
Sbjct: 194 LDALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYLITSTARPEDIEEMVQSAIDGEFLA 253
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A S L+ L D G + DII L R + +++ E + M+ G A RI +G +Q
Sbjct: 254 ARSKLETLLVDTGMAGGDIIDQLHRSVWEFDLDERATVRLMERIGEADYRITEGANEQVQ 313
Query: 314 L 314
L
Sbjct: 314 L 314
>gi|448315838|ref|ZP_21505477.1| replication factor C small subunit [Natronococcus jeotgali DSM
18795]
gi|445610597|gb|ELY64367.1| replication factor C small subunit [Natronococcus jeotgali DSM
18795]
Length = 330
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 127/313 (40%), Positives = 198/313 (63%), Gaps = 3/313 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ +I G+ + V RL ++P+L+ AGP GTGKTT+ A+A E+ +
Sbjct: 19 WIEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYDDD 78
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+RE +ELNASD RGIDVVR++IK FA + + H+++ LDEAD++T+ AQ ALRRT
Sbjct: 79 WRENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYDHRIIFLDEADALTSDAQSALRRT 136
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +S++TRF L+CN SS+II+PIQSRCA+ RF+ L+++ + +++ + EE + +G
Sbjct: 137 MEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAVEAQIREIATEEGIEVTDDG 196
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+I+ ADGDMR+A+N LQA V++E VF + P V+ MV ++G F
Sbjct: 197 VDALIYAADGDMRKAINGLQAAAVMGEVVDEETVFAITSTARPEEVEAMVDRAIDGDFTA 256
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L+ L + G + D+I L R +++ E + ++ G RI +G LQ
Sbjct: 257 ARAALEDLLTERGLAGGDVIDQLHRSAWQFDIPEKATVRLLERLGEVDYRITEGANERLQ 316
Query: 314 LCGLLAKLSIVRE 326
L +LA L++ E
Sbjct: 317 LEAMLASLALENE 329
>gi|336476385|ref|YP_004615526.1| replication factor C [Methanosalsum zhilinae DSM 4017]
gi|335929766|gb|AEH60307.1| Replication factor C [Methanosalsum zhilinae DSM 4017]
Length = 317
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 133/312 (42%), Positives = 190/312 (60%), Gaps = 6/312 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP K+ D+VG +A+ RL + N+P+L+ +GPPG GKT + +A+AHEL G +
Sbjct: 6 WIEKYRPMKLDDVVGQKEAIERLKSYVKTRNLPHLLFSGPPGVGKTATAVAIAHELFGDS 65
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGAQQALR 132
+ E ELNASD+RGIDVVR KIK FA+ T P G K++ LDEAD++T+ AQ ALR
Sbjct: 66 WNENFTELNASDERGIDVVRTKIKNFAK---TSPIGGADFKIIFLDEADALTSDAQSALR 122
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME Y+ + RF L+CN SSKIIEPIQSRCA+ RF L+DE + R+ V E +
Sbjct: 123 RTMERYTGNCRFILSCNYSSKIIEPIQSRCAVYRFRPLADEPVKERIRYVADAEGIKLAD 182
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+ ++AI + A GDMR+ALN LQA + +E ++K+ HP +K ++ L+G F
Sbjct: 183 DAIDAIGYVAQGDMRKALNALQAAAMFDETIQKEMIYKITATAHPDEIKTLINIALDGNF 242
Query: 253 DDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A L L + G S D++ ++R + ++ + +E + G RI +G
Sbjct: 243 SAAREKLDTLMLEQGLSGEDVVGQIYRAMFGLDIPDKKLVELIDVIGEIDFRITEGANEK 302
Query: 312 LQLCGLLAKLSI 323
+QL LLA I
Sbjct: 303 IQLQALLAHFVI 314
>gi|313124845|ref|YP_004035109.1| replication factor c small subunit [Halogeometricum borinquense DSM
11551]
gi|448287254|ref|ZP_21478467.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
gi|312291210|gb|ADQ65670.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
gi|445572462|gb|ELY27000.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
Length = 328
Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 125/300 (41%), Positives = 193/300 (64%), Gaps = 3/300 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + D+ G D V RL ++P+L+ AGP G GKTTS A+A + G +
Sbjct: 17 WIEKYRPQTLDDVYGQEDIVERLRSYIEQDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+R +ELNASD+RGIDVVR++IK FA + + ++++ LDEADS+T+ AQ ALRRT
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFA--RSSFGGFDYRIIFLDEADSLTSDAQSALRRT 134
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +S++TRF L+CN SSKII+PIQSRCA+ RFS L D+ + ++ + + E++ +G
Sbjct: 135 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVREQVKDIAETEEIELTEDG 194
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
L+A+++ A GDMR+A+N+LQA + V++E V+ + P ++ MV++ ++G+F
Sbjct: 195 LDALVYAAGGDMRRAINSLQAAATTGEIVDEEAVYLITSTARPEDIEEMVQSAIDGEFLT 254
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A S L+ L D G + DII L R + ++++ E + M+ G A RI +G +Q
Sbjct: 255 ARSKLETLLVDTGMAGGDIIDQLHRSVWDFDLDERTTVRLMERIGEADYRITEGANEQVQ 314
>gi|448337480|ref|ZP_21526557.1| replication factor C small subunit [Natrinema pallidum DSM 3751]
gi|445625386|gb|ELY78746.1| replication factor C small subunit [Natrinema pallidum DSM 3751]
Length = 330
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 196/310 (63%), Gaps = 3/310 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ DI G+ D V RL ++P+L+ AGP GTGKTT+ ++A E+ +
Sbjct: 19 WIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSIAREVYDDD 78
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++E +ELNASD RGIDVVR++IK FA + + H+++ LDEAD++T+ AQ ALRRT
Sbjct: 79 WQENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYSHRIIFLDEADALTSDAQSALRRT 136
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +SN+TRF L+CN SS+II+PIQSRCA+ RF+ LS + I +++ + E + +G
Sbjct: 137 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELSADAIEAQVREIAATEDIAVTDDG 196
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+++ ADGDMR+A+N LQA V++E VF + P V+ MV + ++G F
Sbjct: 197 VDALVYAADGDMRKAINALQAAAVMGETVDEETVFAITATARPEEVEAMVDHAIDGDFTA 256
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L+ L + G + D+I L R +++ E + ++ G RI +G LQ
Sbjct: 257 ARAALEDLLTERGLAGGDVIDQLHRSAWEFDVPERATVRLLERLGEVDYRITEGANERLQ 316
Query: 314 LCGLLAKLSI 323
L +LA L++
Sbjct: 317 LEAMLASLAL 326
>gi|433637069|ref|YP_007282829.1| DNA polymerase III, gamma/tau subunit [Halovivax ruber XH-70]
gi|433288873|gb|AGB14696.1| DNA polymerase III, gamma/tau subunit [Halovivax ruber XH-70]
Length = 329
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 129/311 (41%), Positives = 194/311 (62%), Gaps = 3/311 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + D+ G+ + V RL ++P+L+ AGP G GKT S A+A EL G +
Sbjct: 18 WIEKYRPESLDDVKGHENIVPRLRKYVEQDDLPHLMFAGPAGVGKTASAGAIARELYGED 77
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+RE +ELNASD+RGIDVVR++IK FA + + K++++ LDEAD++T+ AQ ALRRT
Sbjct: 78 WREHFLELNASDERGIDVVRDRIKNFA--RSSFGGVKYRIIFLDEADALTSDAQSALRRT 135
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +S++TRF L+CN SS+II+PIQSRCA+ RF+ LSDE I ++ + + E + +G
Sbjct: 136 MEQFSHNTRFILSCNYSSQIIDPIQSRCAVFRFTELSDEAIEAQTREIAETEGISLTDDG 195
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+++ A GDMR+A+N LQA V++ VF + P V+ MV + G F
Sbjct: 196 VDALVYAAAGDMRKAINGLQAAAVMGEEVDEAAVFAITSTARPEEVEKMVDQAIGGDFTA 255
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L+ L D G + D+I L R +++ EH + ++ G RI +G LQ
Sbjct: 256 ARATLEDLLTDRGLAGGDVIDQLHRSAWEFDLGEHETVRLLERLGEVDYRITEGANERLQ 315
Query: 314 LCGLLAKLSIV 324
L +LA L++
Sbjct: 316 LEAMLAHLALA 326
>gi|289581577|ref|YP_003480043.1| replication factor C [Natrialba magadii ATCC 43099]
gi|448283016|ref|ZP_21474295.1| replication factor C small subunit [Natrialba magadii ATCC 43099]
gi|289531130|gb|ADD05481.1| Replication factor C [Natrialba magadii ATCC 43099]
gi|445574724|gb|ELY29212.1| replication factor C small subunit [Natrialba magadii ATCC 43099]
Length = 341
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 195/310 (62%), Gaps = 3/310 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + +I G+ + V RL ++P+L+ AGP GTGKTT+ A+A E+ +
Sbjct: 31 WIEKYRPEYLDEIKGHENIVPRLQRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYDDD 90
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+RE +ELNASD RGIDVVR++IK FA + + H+++ LDEAD++T+ AQ ALRRT
Sbjct: 91 WRENFLELNASDQRGIDVVRDRIKDFA--RASFGGYDHRIIFLDEADALTSDAQSALRRT 148
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +SN+TRF L+CN SS+II+PIQSRCA+ RF++L++ I +++ + ++ + +G
Sbjct: 149 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTQLTETAIEAQVREIAADQDIEVTDDG 208
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+++ ADGDMR+A+N LQA V++E VF + P V+ MV + G F
Sbjct: 209 VDALVYAADGDMRKAINALQAAAVMGETVDEETVFAITATARPEEVEEMVEQAIAGDFTA 268
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L+ L D G + D+I L R +++ E + ++ G RI +G LQ
Sbjct: 269 ARASLEDLLTDRGLAGGDVIDQLHRSAWEFDIPEQETVRLLERLGEVDFRITEGANERLQ 328
Query: 314 LCGLLAKLSI 323
L +LA L++
Sbjct: 329 LEAMLASLAL 338
>gi|448304145|ref|ZP_21494089.1| replication factor C small subunit [Natronorubrum sulfidifaciens
JCM 14089]
gi|445591898|gb|ELY46094.1| replication factor C small subunit [Natronorubrum sulfidifaciens
JCM 14089]
Length = 329
Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 127/313 (40%), Positives = 199/313 (63%), Gaps = 3/313 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ +I G+ + V RL ++P+L+ AGP GTGKTT+ ++A E+ +
Sbjct: 19 WIEKYRPERLDEIKGHENIVPRLQRYIEQDDLPHLMFAGPAGTGKTTAAQSIAREVYDDD 78
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+RE +ELNASD RGIDVVR++IK FA + + H+++ LDEAD++T+ AQ ALRRT
Sbjct: 79 WRENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYDHRIIFLDEADALTSDAQSALRRT 136
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +SN+TRF L+CN SS+II+PIQSRCA+ RF+ LS++ I +++ + + E + +G
Sbjct: 137 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELSEDAIEAQIREIAEIEGITVTDDG 196
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+++ ADGDMR+A+N LQA V++E VF + P V+ MV + ++G F
Sbjct: 197 IDALVYAADGDMRKAINALQAAAVMGETVDEETVFAITSTARPEEVEAMVDHAIDGDFTA 256
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L+ L + G + D+I L R +++ E + ++ G RI +G LQ
Sbjct: 257 ARAALEDLLMERGLAGGDVIDQLHRSAWEFDIPEQATVRLLERLGEVDYRITEGANERLQ 316
Query: 314 LCGLLAKLSIVRE 326
L +LA L++ E
Sbjct: 317 LEAMLASLALENE 329
>gi|448388975|ref|ZP_21565470.1| replication factor C small subunit [Haloterrigena salina JCM 13891]
gi|445669262|gb|ELZ21874.1| replication factor C small subunit [Haloterrigena salina JCM 13891]
Length = 330
Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 198/310 (63%), Gaps = 3/310 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ +I G+ + V RL ++P+L+ AGP GTGKTT+ A+A E+ +
Sbjct: 19 WIEKYRPERLDEIKGHENIVPRLQRYVERDDLPHLMFAGPAGTGKTTAAQAIAREVYDDD 78
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+RE +ELNASD RGIDVVR++IK FA + + H+++ LDEAD++T+ AQ ALRRT
Sbjct: 79 WRENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYDHRIIFLDEADALTSDAQSALRRT 136
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +SN+TRF L+CN SS+II+PIQSRCA+ RF+ L+++ I +++ + + E + +G
Sbjct: 137 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQVREIAENEGIEVTDDG 196
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+++ ADGDMR+A+N LQA V++E VF + P V+ MV + ++G F
Sbjct: 197 VDALVYAADGDMRKAINGLQAAAVMGETVDEETVFAITATARPEEVEEMVEHAIDGDFTA 256
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L+ L + G + D+I L R +++ E + ++ G RI +G LQ
Sbjct: 257 ARAALEDLLTERGLAGGDVIDQLHRSAWEFDIPELATVRLLERLGEVDYRITEGANERLQ 316
Query: 314 LCGLLAKLSI 323
L +LA L++
Sbjct: 317 LEAMLASLAL 326
>gi|339239913|ref|XP_003375882.1| replication factor C subunit 2 [Trichinella spiralis]
gi|316975429|gb|EFV58873.1| replication factor C subunit 2 [Trichinella spiralis]
Length = 251
Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 121/214 (56%), Positives = 159/214 (74%), Gaps = 6/214 (2%)
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
+LG + AV+ELNAS+DRGIDV+RNK+KMFAQ++VTLP GK K+V+LDEADSMT GAQQ
Sbjct: 1 MLGSAFGNAVLELNASNDRGIDVIRNKVKMFAQQRVTLPAGKQKIVILDEADSMTDGAQQ 60
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRRTMEIYS +TRF ACN S KIIEPIQSRCAI+RF+ L + +IL+R++ V + E V
Sbjct: 61 ALRRTMEIYSKTTRFVFACNESDKIIEPIQSRCAIIRFTYLLNAQILARILTVCRMENVN 120
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
Y +GLE ++FTA GDMR + +G FVN ENVFK+CD+PHPL VK+M+ +
Sbjct: 121 YTKDGLEDLVFTARGDMR------ISCVAGSGFVNSENVFKICDEPHPLVVKDMLDHCSR 174
Query: 250 GKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY 283
+A + L+ LGYS DI+ T++R+ K++
Sbjct: 175 ADQHEAHEVINHLWTLGYSAEDIVGTIYRVCKSH 208
>gi|448638308|ref|ZP_21676281.1| replication factor C small subunit [Haloarcula sinaiiensis ATCC
33800]
gi|448655209|ref|ZP_21682061.1| replication factor C small subunit [Haloarcula californiae ATCC
33799]
gi|445763557|gb|EMA14744.1| replication factor C small subunit [Haloarcula sinaiiensis ATCC
33800]
gi|445765658|gb|EMA16796.1| replication factor C small subunit [Haloarcula californiae ATCC
33799]
Length = 325
Score = 253 bits (647), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 125/321 (38%), Positives = 200/321 (62%), Gaps = 3/321 (0%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
+ S S + + W+EKYRP + D++G+ + V RL ++ +++ +GP GTGKTT
Sbjct: 4 AESESRAGREEVWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTC 63
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
A+A EL G ++RE +ELNASD+RGIDVVR++IK FA + + +++++ LDEAD+
Sbjct: 64 ATAIARELYGDDWREHFLELNASDERGIDVVRDRIKNFA--RTSFGGVEYRIIFLDEADA 121
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
+T+ AQ ALRRTME +SN+ RF L+CN SS+II+PIQSRCA+ RFS L+D+ + + +
Sbjct: 122 LTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTI 181
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
EE + +GL+A+++ ADGDMR+A+N LQA V++ V+ + P ++
Sbjct: 182 AAEEDIELTEDGLDALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRT 241
Query: 243 MVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAH 301
MV++ L+G F + + L +L + G + DII L R I +++ + + ++ G
Sbjct: 242 MVQSALDGDFTASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDEAAVRVLERIGETD 301
Query: 302 MRICDGVGSYLQLCGLLAKLS 322
RI G +QL +LA L+
Sbjct: 302 YRITRGANERVQLEAMLASLA 322
>gi|322368069|ref|ZP_08042638.1| replication factor C small subunit [Haladaptatus paucihalophilus
DX253]
gi|320552085|gb|EFW93730.1| replication factor C small subunit [Haladaptatus paucihalophilus
DX253]
Length = 325
Score = 253 bits (647), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 131/312 (41%), Positives = 195/312 (62%), Gaps = 7/312 (2%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WVEKYRP + D+ G+ D ARL ++PNL+ +G G GKTT +A+A EL G +
Sbjct: 16 WVEKYRPQTLDDVAGHDDITARLKSYIERNDLPNLLFSGQAGIGKTTCAVAIAKELYGDS 75
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGAQQALR 132
++ +ELNASD+RGIDVVR++IK FA+ PG +++ LDEADS+T+ AQ ALR
Sbjct: 76 WQSHFLELNASDERGIDVVRDQIKNFARHD----PGAVDFQIIFLDEADSLTSDAQAALR 131
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME +S+ TRF ++CN SSKII+PIQSRCA+ RF + D+ + + V EE +
Sbjct: 132 RTMEQFSDKTRFIMSCNYSSKIIDPIQSRCAVFRFGPIPDDAVAGYVQYVADEEGIETTD 191
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+G+EA+++ ADGDMR+A+N LQA V++E+VF + P +K MVR+ ++G F
Sbjct: 192 DGIEALVYAADGDMRKAINALQAAAVMGEQVDEESVFVITSTARPEDIKEMVRHAIDGDF 251
Query: 253 DDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
+ S L +L + G + DII L R I +++ + + ++ G A RI +G
Sbjct: 252 TRSRSILDELLTERGMAGGDIIDQLHRSIWEFDLDDDDAVRVLERVGEADFRITEGANER 311
Query: 312 LQLCGLLAKLSI 323
+QL +LA L++
Sbjct: 312 VQLEAMLASLAL 323
>gi|448622422|ref|ZP_21669116.1| replication factor C small subunit [Haloferax denitrificans ATCC
35960]
gi|445754504|gb|EMA05909.1| replication factor C small subunit [Haloferax denitrificans ATCC
35960]
Length = 327
Score = 253 bits (647), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 133/316 (42%), Positives = 196/316 (62%), Gaps = 10/316 (3%)
Query: 5 SSSSSAYDIP-----WVEKYRPTKVCDIVGNLDAVARL-GIIARDGNMPNLILAGPPGTG 58
S ++ + D P W+EKYRP D+ G D V RL I RD ++P+L+ AGP G G
Sbjct: 2 SEAAESGDAPAGREIWIEKYRPQTFDDVYGQDDIVERLRSYIERD-DLPHLLFAGPAGVG 60
Query: 59 KTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLD 118
KTTS A+A + G ++R +ELNASD+RGIDVVR++IK FA + + ++V+ LD
Sbjct: 61 KTTSATAIARAIYGDDWRGNFLELNASDERGIDVVRDRIKNFA--RSSFGGHDYRVIFLD 118
Query: 119 EADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSR 178
EADS+T AQ ALRRTME +S++TRF L+CN SSKII+PIQSRCA+ RFS L D+ + +
Sbjct: 119 EADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQ 178
Query: 179 LMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPL 238
+ + E + +GL+A+++ A GDMR+A+N+LQA + V++E V+ + P
Sbjct: 179 VRDIAAAEDIEVTEDGLDALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPE 238
Query: 239 HVKNMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
++ MVRN ++G+F A L+ L D G + DII L R + +++ E + M+
Sbjct: 239 DIEEMVRNAIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDEREAVRLMERI 298
Query: 298 GFAHMRICDGVGSYLQ 313
G A RI +G +Q
Sbjct: 299 GEADYRISEGANEQVQ 314
>gi|397772266|ref|YP_006539812.1| Replication factor C [Natrinema sp. J7-2]
gi|397681359|gb|AFO55736.1| Replication factor C [Natrinema sp. J7-2]
Length = 360
Score = 253 bits (646), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 196/310 (63%), Gaps = 3/310 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ DI G+ D V RL ++P+L+ AGP GTGKTT+ ++A E+ +
Sbjct: 49 WIEKYRPERLNDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSIAREVYDDD 108
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++E +ELNASD RGIDVVR++IK FA + + H+++ LDEAD++T+ AQ ALRRT
Sbjct: 109 WQENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYSHRIIFLDEADALTSDAQSALRRT 166
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +SN+TRF L+CN SS+II+PIQSRCA+ RF+ L+ + I +++ + E + +G
Sbjct: 167 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTADAIEAQVREIAATEDIAVTDDG 226
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+++ ADGDMR+A+N LQA V++E VF + P V+ MV + ++G F
Sbjct: 227 VDALVYAADGDMRKAINALQAAAVMGETVDEETVFAITATARPEEVEAMVEHAIDGDFTA 286
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L+ L + G + D+I L R +++ E + ++ G RI +G LQ
Sbjct: 287 ARAALEDLLTERGLAGGDVIDQLHRSAWEFDVPERATVRLLERLGEVDYRITEGANERLQ 346
Query: 314 LCGLLAKLSI 323
L +LA L++
Sbjct: 347 LEAMLASLAL 356
>gi|57012999|sp|Q5UZE5.2|RFCS_HALMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
Length = 325
Score = 253 bits (646), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 125/321 (38%), Positives = 200/321 (62%), Gaps = 3/321 (0%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
+ S S + + W+EKYRP + D++G+ + V RL ++ +++ +GP GTGKTT
Sbjct: 4 AESESRAGREEVWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTC 63
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
A+A EL G ++RE +ELNASD+RGIDVVR++IK FA + + +++++ LDEAD+
Sbjct: 64 ATAIARELYGDDWREHFLELNASDERGIDVVRDRIKNFA--RTSFGGVEYRIIFLDEADA 121
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
+T+ AQ ALRRTME +SN+ RF L+CN SS+II+PIQSRCA+ RFS L+D+ + + +
Sbjct: 122 LTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTI 181
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
EE + +GL+A+++ ADGDMR+A+N LQA V++ V+ + P ++
Sbjct: 182 AAEEDIELTEDGLDALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRT 241
Query: 243 MVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAH 301
MV++ L+G F + + L +L + G + DII L R I +++ + + ++ G
Sbjct: 242 MVQSALDGDFTASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDDAAVRVLERIGETD 301
Query: 302 MRICDGVGSYLQLCGLLAKLS 322
RI G +QL +LA L+
Sbjct: 302 YRITRGANERVQLEAMLASLA 322
>gi|448346878|ref|ZP_21535757.1| replication factor C small subunit [Natrinema altunense JCM 12890]
gi|445631215|gb|ELY84447.1| replication factor C small subunit [Natrinema altunense JCM 12890]
Length = 330
Score = 253 bits (646), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 196/310 (63%), Gaps = 3/310 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ DI G+ D V RL ++P+L+ AGP GTGKTT+ ++A E+ +
Sbjct: 19 WIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSIAREVYDDD 78
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++E +ELNASD RGIDVVR++IK FA + + H+++ LDEAD++T+ AQ ALRRT
Sbjct: 79 WQENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYSHRIIFLDEADALTSDAQSALRRT 136
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +SN+TRF L+CN SS+II+PIQSRCA+ RF+ L+ + I +++ + E + +G
Sbjct: 137 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTVDAIEAQVREIAATEDIAVTDDG 196
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+++ ADGDMR+A+N LQA V++E VF + P V+ MV + ++G F
Sbjct: 197 VDALVYAADGDMRKAINALQAAAVMGETVDEETVFAITATARPEEVEAMVEHAIDGDFTA 256
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L+ L + G + D+I L R +++ E + ++ G RI +G LQ
Sbjct: 257 ARAALEDLLTERGLAGGDVIDQLHRSAWEFDVPERATVRLLERLGEVDYRITEGANERLQ 316
Query: 314 LCGLLAKLSI 323
L +LA L++
Sbjct: 317 LEAMLASLAL 326
>gi|448445134|ref|ZP_21590189.1| replication factor C small subunit [Halorubrum saccharovorum DSM
1137]
gi|445685440|gb|ELZ37794.1| replication factor C small subunit [Halorubrum saccharovorum DSM
1137]
Length = 328
Score = 253 bits (646), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 129/301 (42%), Positives = 189/301 (62%), Gaps = 5/301 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP- 73
W+EKYRP + DI G + V RL ++P+L+ +GP G GKTT+ A+A ++ G
Sbjct: 18 WIEKYRPQSLDDIHGQEEIVERLQSYIEQDDIPHLLFSGPAGVGKTTAATAIARQVYGED 77
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
N+R +ELNASD RGIDVVR++IK FA+ G ++V LDEADS+T AQ ALRR
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFARSSF---GGDFRIVFLDEADSLTDDAQSALRR 134
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
TME +S++TRF L+CN SSKII+PIQSRCA+ RFS LSDE + ++ + E + E
Sbjct: 135 TMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVAAQTREIAAAEGIEVTDE 194
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
G++A+++ ADGDMR+A+N+LQA + V++E V+ + P +++MV N LEG F
Sbjct: 195 GVDALVYAADGDMRRAINSLQAAATTGDVVDEEAVYAITATARPEEIESMVTNALEGDFS 254
Query: 254 DACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
A + L L + G + D+I L R + ++++E + M+ G A RI +G +
Sbjct: 255 RARATLDTLLTETGMAGGDVIDQLHRSVWEFDLSEREAVALMERIGEADYRIAEGANEQV 314
Query: 313 Q 313
Q
Sbjct: 315 Q 315
>gi|448606584|ref|ZP_21659010.1| replication factor C small subunit [Haloferax sulfurifontis ATCC
BAA-897]
gi|445738792|gb|ELZ90304.1| replication factor C small subunit [Haloferax sulfurifontis ATCC
BAA-897]
Length = 327
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 133/316 (42%), Positives = 196/316 (62%), Gaps = 10/316 (3%)
Query: 5 SSSSSAYDIP-----WVEKYRPTKVCDIVGNLDAVARL-GIIARDGNMPNLILAGPPGTG 58
S ++ + D P W+EKYRP D+ G D V RL I RD ++P+L+ AGP G G
Sbjct: 2 SEAAESGDAPAGREIWIEKYRPQTFDDVYGQDDIVERLRSYIERD-DLPHLLFAGPAGVG 60
Query: 59 KTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLD 118
KTTS A+A + G ++R +ELNASD+RGIDVVR++IK FA + + ++V+ LD
Sbjct: 61 KTTSATAIARAIYGDDWRGNFLELNASDERGIDVVRDRIKNFA--RSSFGGHDYRVIFLD 118
Query: 119 EADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSR 178
EADS+T AQ ALRRTME +S++TRF L+CN SSKII+PIQSRCA+ RFS L D+ + +
Sbjct: 119 EADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQ 178
Query: 179 LMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPL 238
+ + E + +GL+A+++ A GDMR+A+N+LQA + V++E V+ + P
Sbjct: 179 VRDIAAAEGIEVTEDGLDALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPE 238
Query: 239 HVKNMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
++ MVRN ++G+F A L+ L D G + DII L R + +++ E + M+
Sbjct: 239 DIERMVRNAIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDEREAVRLMERI 298
Query: 298 GFAHMRICDGVGSYLQ 313
G A RI +G +Q
Sbjct: 299 GEADYRISEGANEQVQ 314
>gi|11499642|ref|NP_070884.1| replication factor C small subunit [Archaeoglobus fulgidus DSM
4304]
gi|42559325|sp|O28219.1|RFCS_ARCFU RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=afRFC small subunit; Short=afRFCsm
gi|110590966|pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
gi|110590967|pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
gi|110590968|pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
gi|110590969|pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
gi|110590970|pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
gi|110590971|pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
gi|110590972|pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
gi|110590973|pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
gi|110590974|pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
gi|2648471|gb|AAB89191.1| activator 1, replication factor C, 35 KD subunit [Archaeoglobus
fulgidus DSM 4304]
Length = 319
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 131/313 (41%), Positives = 197/313 (62%), Gaps = 6/313 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WVEKYRP + ++VG + + RL N+P+L+ +GPPGTGKT + +ALA +L G N
Sbjct: 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN 66
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGAQQALR 132
+R+ +E+NASD+RGIDVVR+KIK FA+ T P G K++ LDEAD++TA AQ ALR
Sbjct: 67 WRDNFIEMNASDERGIDVVRHKIKEFAR---TAPIGGAPFKIIFLDEADALTADAQAALR 123
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME+YS S RF L+CN S+IIEPIQSRCA+ RF + E + RL+ + ++E V
Sbjct: 124 RTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITE 183
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GLEA+I+ + GD R+A+N LQ + V+ + ++++ P + +++ L+G F
Sbjct: 184 DGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTELIQTALKGNF 243
Query: 253 DDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
+A L +L + G S DI+ LFR I + + + LK++ + + G R+ +G
Sbjct: 244 MEARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDKLGEVDFRLTEGANER 303
Query: 312 LQLCGLLAKLSIV 324
+QL LA LS +
Sbjct: 304 IQLDAYLAYLSTL 316
>gi|303390791|ref|XP_003073626.1| replication factor C [Encephalitozoon intestinalis ATCC 50506]
gi|303302773|gb|ADM12266.1| replication factor C [Encephalitozoon intestinalis ATCC 50506]
Length = 309
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 132/303 (43%), Positives = 191/303 (63%), Gaps = 9/303 (2%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY 75
V KYRP +V D++GN V + +I +MP+L+ AGPPGTGKTT LA +LL P+
Sbjct: 5 VNKYRPNEVQDVIGNQMTVELVSLIIDSKDMPHLLFAGPPGTGKTTCAKILARKLL-PS- 62
Query: 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTM 135
+E ++ELNASD+RGI+ VR IK FAQ+++ KV++LDEADSMT AQQA+RR M
Sbjct: 63 KEGLLELNASDERGIETVRTTIKSFAQRRIK--DCSFKVIILDEADSMTTAAQQAMRRVM 120
Query: 136 EIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGL 195
E++S+ RF L CN +KI EPIQSRCAI+RF R+ + IL RL + ++E + E L
Sbjct: 121 EVHSSECRFILICNTLTKIFEPIQSRCAILRFDRIENSMILERLREISKDEGIKISKEAL 180
Query: 196 EAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDA 255
+ I+ +DGDMRQ+LN LQA S ++Q + K+ P P ++ ++ +L + ++A
Sbjct: 181 DLIVELSDGDMRQSLNILQACISSSETIDQGYIIKIIGLPSPKRIERVLERLLRNEAEEA 240
Query: 256 CSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLC 315
+++D + P D+I + FR KN E E LK+ G A++RI +GV S LQ
Sbjct: 241 LKMFDEIWDEKFDPLDLINSFFRAAKNMENYELLKV-----IGLANLRISEGVNSRLQFY 295
Query: 316 GLL 318
G+
Sbjct: 296 GMF 298
>gi|448354529|ref|ZP_21543285.1| replication factor C small subunit [Natrialba hulunbeirensis JCM
10989]
gi|445637417|gb|ELY90567.1| replication factor C small subunit [Natrialba hulunbeirensis JCM
10989]
Length = 339
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 195/310 (62%), Gaps = 3/310 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + +I G+ + V RL ++P+L+ AGP GTGKTT+ A+A E+ +
Sbjct: 29 WIEKYRPEYLDEIKGHENIVPRLQRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYDDD 88
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+RE +ELNASD RGIDVVR++IK FA + + H+++ LDEAD++T+ AQ ALRRT
Sbjct: 89 WRENFLELNASDQRGIDVVRDRIKDFA--RASFGGYDHRIIFLDEADALTSDAQSALRRT 146
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +SN+TRF L+CN SS+II+PIQSRCA+ RF++L++ I +++ + ++ + +G
Sbjct: 147 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTQLTETAIEAQVREIAADQDIEVTDDG 206
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+++ ADGDMR+A+N LQA V++E VF + P V+ MV + G F
Sbjct: 207 VDALVYAADGDMRKAINALQAAAVMGETVDEETVFAITATARPEEVEEMVDQAIAGDFTA 266
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L+ L D G + D+I L R +++ E + ++ G RI +G LQ
Sbjct: 267 ARASLEDLLTDRGLAGGDVIDQLHRSAWEFDIPEKETVRLLERLGEVDFRITEGANERLQ 326
Query: 314 LCGLLAKLSI 323
L +LA L++
Sbjct: 327 LEAMLASLAL 336
>gi|448680330|ref|ZP_21690647.1| replication factor C small subunit [Haloarcula argentinensis DSM
12282]
gi|445768774|gb|EMA19851.1| replication factor C small subunit [Haloarcula argentinensis DSM
12282]
Length = 325
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 125/321 (38%), Positives = 200/321 (62%), Gaps = 3/321 (0%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
+ S S + + W+EKYRP + D++G+ + V RL ++ +++ +GP GTGKTT
Sbjct: 4 AESESRAGREEVWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTC 63
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
A+A EL G ++RE +ELNASD+RGIDVVR++IK FA + + +++++ LDEAD+
Sbjct: 64 ATAIARELYGDDWREHFLELNASDERGIDVVRDRIKNFA--RTSFGGVEYRIIFLDEADA 121
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
+T+ AQ ALRRTME +SN+ RF L+CN SS+II+PIQSRCA+ RFS L+D+ + + +
Sbjct: 122 LTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNI 181
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
EE + +GL+A+++ ADGDMR+A+N LQA V++ V+ + P ++
Sbjct: 182 AAEEDIELTEDGLDALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRT 241
Query: 243 MVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAH 301
MV++ L+G F + + L +L + G + DII L R I +++ + + ++ G
Sbjct: 242 MVQSALDGDFTASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIGDDAAVRVLERIGETD 301
Query: 302 MRICDGVGSYLQLCGLLAKLS 322
RI G +QL +LA L+
Sbjct: 302 YRITRGANERVQLEAMLASLA 322
>gi|294496335|ref|YP_003542828.1| replication factor C small subunit [Methanohalophilus mahii DSM
5219]
gi|292667334|gb|ADE37183.1| replication factor C small subunit [Methanohalophilus mahii DSM
5219]
Length = 318
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 134/315 (42%), Positives = 197/315 (62%), Gaps = 12/315 (3%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ D+VG DA+ RL + N+P+L+ +GPPG GKT + +++A EL G +
Sbjct: 6 WIEKYRPYRLEDVVGQSDAIERLRSYIKTNNLPHLLFSGPPGVGKTATAVSIARELFGDD 65
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGAQQALR 132
+RE ELNASD+RGIDVVR KIK FA+ T P G K++ LDEAD++T AQ ALR
Sbjct: 66 WRENFTELNASDERGIDVVRTKIKNFAK---TSPIGGADFKIIFLDEADALTPDAQSALR 122
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME Y+N+ RF L+CN SSKIIEPIQSRCA+ RF LSD+ I R + ++E +
Sbjct: 123 RTMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRPLSDDAIGKRCRHIAEKEGLDIAD 182
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+G+EAI + A+GDMR+A+N +QA ++ ++++++ HP +K ++ + L G F
Sbjct: 183 DGIEAIKYVAEGDMRKAINAVQAASMFDTSIHADSIYRITATAHPEEIKALLESALGGNF 242
Query: 253 DDACSGLKQLYDL----GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGV 308
S K+L DL G S D++ ++R + + ++ + + G RI +G
Sbjct: 243 ---ISSRKKLDDLMVSRGLSGEDVVGQVYRSLFDLDIPARKLVSIVDVLGEIDFRITEGA 299
Query: 309 GSYLQLCGLLAKLSI 323
+QL LLA LSI
Sbjct: 300 DERIQLDALLAHLSI 314
>gi|448664377|ref|ZP_21684180.1| replication factor C small subunit [Haloarcula amylolytica JCM
13557]
gi|445775022|gb|EMA26036.1| replication factor C small subunit [Haloarcula amylolytica JCM
13557]
Length = 325
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 125/321 (38%), Positives = 200/321 (62%), Gaps = 3/321 (0%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
+ S S + + W+EKYRP + D++G+ + V RL ++ +++ +GP GTGKTT
Sbjct: 4 AESESRAGREEVWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTC 63
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
A+A EL G ++RE +ELNASD+RGIDVVR++IK FA + + +++++ LDEAD+
Sbjct: 64 ATAIARELYGEDWREHFLELNASDERGIDVVRDRIKNFA--RTSFGGVEYRIIFLDEADA 121
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
+T+ AQ ALRRTME +SN+ RF L+CN SS+II+PIQSRCA+ RFS L+D+ + + +
Sbjct: 122 LTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNI 181
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
EE + +GL+A+++ ADGDMR+A+N LQA V++ V+ + P ++
Sbjct: 182 AAEEGIELTEDGLDALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRT 241
Query: 243 MVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAH 301
MV++ L+G F + + L +L + G + DII L R I +++ + + ++ G
Sbjct: 242 MVQSALDGDFTASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIEDEAAVRVLERIGETD 301
Query: 302 MRICDGVGSYLQLCGLLAKLS 322
RI G +QL +LA L+
Sbjct: 302 YRITRGANERVQLEAMLASLA 322
>gi|448730730|ref|ZP_21713035.1| replication factor C small subunit [Halococcus saccharolyticus DSM
5350]
gi|445793171|gb|EMA43761.1| replication factor C small subunit [Halococcus saccharolyticus DSM
5350]
Length = 325
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 125/314 (39%), Positives = 195/314 (62%), Gaps = 3/314 (0%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
M+ S++ ++ D W+EKYRP + D+VG+ + V RL ++P+L+ +GP G GKT
Sbjct: 1 MSESATGAAGRDEIWIEKYRPETLADVVGHENIVGRLESYVAQNDLPHLLFSGPAGVGKT 60
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TS +A+A E+ G ++RE +ELNASD+RGIDVVR++IK FA + + ++++ LDEA
Sbjct: 61 TSSMAIAREVYGDDWRENFLELNASDERGIDVVRDRIKDFA--RTSFGGYDYRIIFLDEA 118
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D++T+ AQ ALRRTME ++N+TRF L+CN SS+II+PIQSRCA+ RF L++E + +
Sbjct: 119 DALTSDAQSALRRTMEQFANNTRFILSCNYSSQIIDPIQSRCAVFRFGPLAEEAVGEYIR 178
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
V + E + +G++A+++ ADGDMR+ALN LQA + V+ E V+ + P +
Sbjct: 179 RVAENEGIEVTDDGVDALVYAADGDMRKALNGLQAAATMEGAVDDEAVYGITATARPEEI 238
Query: 241 KNMVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGF 299
+ MV L+G F A + L L D G D+I L R ++++ + + ++ G
Sbjct: 239 EAMVERALDGDFTAARAKLDDLLTDAGLGGGDVIDQLHRSAWDFDLDDAATVRLLERVGE 298
Query: 300 AHMRICDGVGSYLQ 313
RI G LQ
Sbjct: 299 TDYRITQGANERLQ 312
>gi|156938086|ref|YP_001435882.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
gi|156567070|gb|ABU82475.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
Length = 329
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 135/320 (42%), Positives = 197/320 (61%), Gaps = 5/320 (1%)
Query: 8 SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
S+ ++ W EKYRP + +IV D V RL + N+P+++ AGPPGTGKTT+ LALA
Sbjct: 2 SAPEELLWAEKYRPKSLDEIVDQEDIVRRLKKFVEEKNVPHMLFAGPPGTGKTTAALALA 61
Query: 68 HELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGA 127
H+L G YR+ ++ELNASD+RGIDV+R K+K FA+ + T P K+V+LDEAD+MTA A
Sbjct: 62 HDLYGEKYRQYILELNASDERGIDVIRTKVKEFARSR-TPPTVPFKLVILDEADNMTADA 120
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
QQALRR ME+YS +TRF L N SKIIEP+QSRC RF L ++++ RL + Q+E
Sbjct: 121 QQALRRLMEMYSTTTRFILLANFPSKIIEPVQSRCVYFRFRPLPKDKVIERLKYICQKEG 180
Query: 188 VPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNV 247
V + LE I ++GDMR+A+N LQA + V ++ V+K HP +K ++
Sbjct: 181 VQCEEDALEEIYNISEGDMRKAINILQAA-AALGKVTKDAVYKAIGYVHPSKIKEILEYA 239
Query: 248 LEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRII--KNYEMAEHLKLEFMKEAGFAHMRI 304
L G F + L+ + + G S D++ R + ++E+ E LK+ AG R+
Sbjct: 240 LNGDFTKSAKLLRDVMIEYGLSGLDVLKMFQRELMGGSFELPEELKVLLADYAGEVQFRL 299
Query: 305 CDGVGSYLQLCGLLAKLSIV 324
+G +QL LA+L+++
Sbjct: 300 AEGADDEVQLQAFLARLALL 319
>gi|448683820|ref|ZP_21692440.1| replication factor C small subunit [Haloarcula japonica DSM 6131]
gi|445783393|gb|EMA34222.1| replication factor C small subunit [Haloarcula japonica DSM 6131]
Length = 325
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 125/321 (38%), Positives = 200/321 (62%), Gaps = 3/321 (0%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
+ S S + + W+EKYRP + D++G+ + V RL ++ +++ +GP GTGKTT
Sbjct: 4 AESESRAGREEVWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTC 63
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
A+A EL G ++RE +ELNASD+RGIDVVR++IK FA + + +++++ LDEAD+
Sbjct: 64 ATAIARELYGDDWREHFLELNASDERGIDVVRDRIKNFA--RTSFGGVEYRIIFLDEADA 121
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
+T+ AQ ALRRTME +SN+ RF L+CN SS+II+PIQSRCA+ RFS L+D+ + + +
Sbjct: 122 LTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVADEIRNI 181
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
EE + +GL+A+++ ADGDMR+A+N LQA V++ V+ + P ++
Sbjct: 182 AAEEDIELTEDGLDALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRT 241
Query: 243 MVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAH 301
MV++ L+G F + + L +L + G + DII L R I +++ + + ++ G
Sbjct: 242 MVQSALDGDFTASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDEAAVRVLERIGETD 301
Query: 302 MRICDGVGSYLQLCGLLAKLS 322
RI G +QL +LA L+
Sbjct: 302 YRITRGANERVQLEAMLASLA 322
>gi|299472821|emb|CBN80389.1| EsV-1-87 [Ectocarpus siliculosus]
Length = 340
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 132/318 (41%), Positives = 194/318 (61%), Gaps = 11/318 (3%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDG-NMPNLILAGPPGTGKTTSILALAHELLG 72
PWVEKYRP ++VGN +++ L +A G ++PNL++ GP G GKT + L ++
Sbjct: 21 PWVEKYRPLCFSEVVGNEKSISLLSNLATKGLSIPNLLICGPSGCGKTACVDILCKAMIP 80
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTL--PPGKHKVVVLDEADSMTAGAQQA 130
N ++ L++ D+RGID VR +K FA+ +V P K+VVLDEADSMT GA QA
Sbjct: 81 ENRGARILRLSSFDERGIDNVRTTVKNFARGRVGTEATPAIAKIVVLDEADSMTPGAFQA 140
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR M++YS++TRF + CN S+KIIEPIQSRCAI+RFS++ D ++ R+ V V Y
Sbjct: 141 LRRIMDVYSSTTRFIIVCNNSTKIIEPIQSRCAILRFSKVEDAQLCLRVRQVCDMAGVEY 200
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHP---LHVKNMVRNV 247
G+ A+ ADGD+R A+N+L + SGFR + ENV++ C P P + + +++RN
Sbjct: 201 DLGGIGALACVADGDLRSAINSLSSIVSGFRRLTSENVYRTCRSPQPAKIVEIVDLLRN- 259
Query: 248 LEGKFDDACSGLKQLYDL---GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRI 304
G + +AC L+ L GYSP DI+ + FR + ++ E ++E K G R+
Sbjct: 260 -RGGYVEACKKLRGLCGKGGEGYSPMDILASFFRALSVLDVRESQRIEIAKVIGLVQNRV 318
Query: 305 CDGVGSYLQLCGLLAKLS 322
G SYLQL +L ++
Sbjct: 319 ASGASSYLQLAAMLWSIA 336
>gi|448560589|ref|ZP_21634037.1| replication factor C small subunit [Haloferax prahovense DSM 18310]
gi|445722239|gb|ELZ73902.1| replication factor C small subunit [Haloferax prahovense DSM 18310]
Length = 327
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 132/316 (41%), Positives = 195/316 (61%), Gaps = 10/316 (3%)
Query: 5 SSSSSAYDIP-----WVEKYRPTKVCDIVGNLDAVARL-GIIARDGNMPNLILAGPPGTG 58
S ++ + D P W+EKYRP D+ G D V RL I RD ++P+L+ AGP G G
Sbjct: 2 SEAAESGDAPAGREIWIEKYRPQTFDDVYGQDDIVERLRSYIERD-DLPHLLFAGPAGVG 60
Query: 59 KTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLD 118
KTTS A+A + G ++R +ELNASD+RGIDVVR++IK FA + + ++V+ LD
Sbjct: 61 KTTSATAIARAIYGDDWRGNFLELNASDERGIDVVRDRIKNFA--RSSFGGHDYRVIFLD 118
Query: 119 EADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSR 178
EADS+T AQ ALRRTME +S++TRF L+CN SSKII+PIQSRCA+ RFS L D+ + +
Sbjct: 119 EADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQ 178
Query: 179 LMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPL 238
+ + E + +GL+A+++ A GDMR+A+N+LQA + V++E V+ + P
Sbjct: 179 VRDIAAAEDIEVTEDGLDALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPE 238
Query: 239 HVKNMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
++ MVR ++G+F A L+ L D G + DII L R + +++ E + M+
Sbjct: 239 DIEEMVRAAIDGEFTTARKQLETLIVDTGMAGGDIIDQLHRSVWEFDLGEREAVRLMERI 298
Query: 298 GFAHMRICDGVGSYLQ 313
G A RI +G +Q
Sbjct: 299 GEADYRISEGANEQVQ 314
>gi|76801102|ref|YP_326110.1| replication factor C small subunit [Natronomonas pharaonis DSM
2160]
gi|83288436|sp|Q3ITJ2.1|RFCS_NATPD RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|76556967|emb|CAI48541.1| replication factor C small subunit [Natronomonas pharaonis DSM
2160]
Length = 325
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 124/294 (42%), Positives = 186/294 (63%), Gaps = 3/294 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + DIVG+ RL ++P+L+ AGP G GKTT+ A+A E+ G +
Sbjct: 14 WIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGDD 73
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+RE +ELNASD RGIDVVR++IK FA + + H+++ LDEAD++T+ AQ ALRRT
Sbjct: 74 WRENFLELNASDQRGIDVVRDRIKSFA--RASFGGYDHRIIFLDEADALTSDAQSALRRT 131
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +S++TRF L+CN SS+II+PIQSRCA+ RFS L D + ++ ++ E + +G
Sbjct: 132 MEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAAVDEQIRIIADTEGIELTDDG 191
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+++ ADGDMR+A+N LQA V++E V+ + P ++ MV ++G F
Sbjct: 192 VDALVYAADGDMRKAINGLQAAAVMGGTVDEEAVYTITSTARPEEIREMVTEAMDGDFTA 251
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDG 307
A S L+ L D+G + DII L R + +++ E ++ M+ G A RI G
Sbjct: 252 ARSQLETLLTDVGIAGGDIIDQLHRSVWEFDLEEREAVQLMERIGEADYRITAG 305
>gi|55379214|ref|YP_137064.1| replication factor C small subunit [Haloarcula marismortui ATCC
43049]
gi|55231939|gb|AAV47358.1| replication factor C small subunit [Haloarcula marismortui ATCC
43049]
Length = 345
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 123/309 (39%), Positives = 195/309 (63%), Gaps = 3/309 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + D++G+ + V RL ++ +++ +GP GTGKTT A+A EL G +
Sbjct: 36 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 95
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+RE +ELNASD+RGIDVVR++IK FA + + +++++ LDEAD++T+ AQ ALRRT
Sbjct: 96 WREHFLELNASDERGIDVVRDRIKNFA--RTSFGGVEYRIIFLDEADALTSDAQSALRRT 153
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +SN+ RF L+CN SS+II+PIQSRCA+ RFS L+D+ + + + EE + +G
Sbjct: 154 MEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELTEDG 213
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
L+A+++ ADGDMR+A+N LQA V++ V+ + P ++ MV++ L+G F
Sbjct: 214 LDALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDFTA 273
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
+ + L +L + G + DII L R I +++ + + ++ G RI G +Q
Sbjct: 274 SRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDDAAVRVLERIGETDYRITRGANERVQ 333
Query: 314 LCGLLAKLS 322
L +LA L+
Sbjct: 334 LEAMLASLA 342
>gi|170290625|ref|YP_001737441.1| DNA replication ATPase HolB small subunit [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170174705|gb|ACB07758.1| ATPase involved in DNA replication HolB, small subunit [Candidatus
Korarchaeum cryptofilum OPF8]
Length = 331
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 144/326 (44%), Positives = 204/326 (62%), Gaps = 23/326 (7%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH------ 68
WVEKYRP + D+VG D + L +MP+L+ AGP GTGKTT+ LALA+
Sbjct: 6 WVEKYRPKTLDDVVGQDDIIRALKGFVEKRSMPHLLFAGPAGTGKTTTALALANDLYKSE 65
Query: 69 ELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAG 126
EL+ NY +ELNASD+RGID +R KIK FA+ T P G+ K++ LDEAD++TA
Sbjct: 66 ELVAANY----LELNASDERGIDTIRTKIKDFAK---TAPFGEVPFKIIHLDEADNLTAD 118
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQQALRR ME+YS +TRF ACN SSKIIEPIQSRCA+ RF + +E I +RL+++ + E
Sbjct: 119 AQQALRRIMEMYSATTRFIFACNYSSKIIEPIQSRCAVFRFGPIPEEAIKNRLIMIAERE 178
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
+ Y +G+ AII+ A+GD+R+A+N LQ + V+ + V++V HP V+ M+ +
Sbjct: 179 GLKYTEDGISAIIYVAEGDLRKAINLLQTASAMASTVDSKVVYRVAGLAHPEEVRAMINS 238
Query: 247 VLEGKFDDACSGLKQLY-DLGYSPTDIITTLFR-IIKNYEMAEHLK---LEFMKEAGFAH 301
L+GKF A L+ L + G S D+I L R I+ + +++ K + F+ E F
Sbjct: 239 ALKGKFLSAREALRNLMINYGMSAQDVIRQLNREIMASKSLSDKEKAMLMIFLSEVDF-- 296
Query: 302 MRICDGVGSYLQLCGLLAKLSIVRET 327
R+ +G +QL +LAKL V E+
Sbjct: 297 -RVTEGAHGDVQLAAMLAKLVEVGES 321
>gi|448342324|ref|ZP_21531276.1| replication factor C small subunit [Natrinema gari JCM 14663]
gi|445626315|gb|ELY79664.1| replication factor C small subunit [Natrinema gari JCM 14663]
Length = 330
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 195/310 (62%), Gaps = 3/310 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ DI G+ D V RL ++P+L+ AGP GTGKTT+ ++A E+ +
Sbjct: 19 WIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSIAREVYDDD 78
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++E +ELNASD RGIDVVR++IK FA + + H+++ LDEAD++T+ AQ ALRRT
Sbjct: 79 WQENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYSHRIIFLDEADALTSDAQSALRRT 136
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +SN+TRF L+CN SS+II+PIQSRCA+ RF+ L+ + I +++ + E + +G
Sbjct: 137 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTADAIEAQVREIAATEDIAVTDDG 196
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+++ ADGDMR+A+N LQA V++ VF + P V+ MV + ++G F
Sbjct: 197 VDALVYAADGDMRKAINALQAAAVMGETVDEGTVFAITATARPEEVEAMVEHAIDGDFTA 256
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L+ L + G + D+I L R +++ E + ++ G RI +G LQ
Sbjct: 257 ARAALEDLLTERGLAGGDVIDQLHRSAWEFDVPERATVRLLERLGEVDYRITEGANERLQ 316
Query: 314 LCGLLAKLSI 323
L +LA L++
Sbjct: 317 LEAMLASLAL 326
>gi|448589356|ref|ZP_21649515.1| replication factor C small subunit [Haloferax elongans ATCC
BAA-1513]
gi|445735784|gb|ELZ87332.1| replication factor C small subunit [Haloferax elongans ATCC
BAA-1513]
Length = 329
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 128/301 (42%), Positives = 191/301 (63%), Gaps = 5/301 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARL-GIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
W+EKYRP + D+ G + V RL I RD ++P+L+ AGP G GKTTS A+A + G
Sbjct: 19 WIEKYRPQTLDDVYGQEEIVERLRSYIERD-DLPHLLFAGPAGVGKTTSATAIARAIYGD 77
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
++R +ELNASD RGIDVVR++IK FA + + ++++ LDEADS+T AQ ALRR
Sbjct: 78 DWRGNFLELNASDQRGIDVVRDRIKNFA--RSSFGGHDYRIIFLDEADSLTNDAQSALRR 135
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
TME +S++TRF L+CN SSKII+PIQSRCA+ RFS L D+ I + + + E + +
Sbjct: 136 TMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQTRDIAKAEGIELTED 195
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
GL+A+++ A GDMR+A+N+LQA + V++E V+ + P ++ MVR+ ++G+F
Sbjct: 196 GLDALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPEDIETMVRDAIDGEFT 255
Query: 254 DACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
A L+ L D G + DII L R + ++++ E + M+ G A RI +G +
Sbjct: 256 AARKQLETLIVDTGMAGGDIIDQLHRSVWDFDLDERAAVRLMERIGEADYRISEGANEQV 315
Query: 313 Q 313
Q
Sbjct: 316 Q 316
>gi|13242558|ref|NP_077572.1| EsV-1-87 [Ectocarpus siliculosus virus 1]
gi|10697317|gb|AAG21804.1|AF210454_2 EsV-1-87 [Ectocarpus siliculosus virus 1]
Length = 324
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 134/318 (42%), Positives = 200/318 (62%), Gaps = 11/318 (3%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLG-IIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
PWVEKYRP ++VGN +++ L + A+ ++P+L++ GP G GKT + L + ++
Sbjct: 5 PWVEKYRPLCFSEVVGNKKSISLLSNLAAKRVSIPHLLICGPSGCGKTVCVDILCNTMIP 64
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKV-TLP-PGKHKVVVLDEADSMTAGAQQA 130
N ++ L++ D+RGID VR +K FA+ +V T P P K+VVLDEADSMT GA QA
Sbjct: 65 ENRGARMLRLSSFDERGIDNVRTTVKNFARGRVGTEPTPTIAKIVVLDEADSMTPGAFQA 124
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR M++YS++TRF + CN S+KIIEPIQSRCAI+RFS++ D ++ R+ V V Y
Sbjct: 125 LRRIMDVYSSTTRFIIVCNNSTKIIEPIQSRCAILRFSKVDDAQLRLRIRQVCDMAGVEY 184
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV---RNV 247
P G+ A+ ADGD+R A+N+L + SGFR + ENV++ C P P + ++V RN
Sbjct: 185 DPGGIGALACVADGDVRSAINSLASIVSGFRRLTSENVYRTCRSPQPAKIVDIVDLLRN- 243
Query: 248 LEGKFDDACSGLKQLY---DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRI 304
+G + +AC L+ L GYSPTDI+++ F+ + ++ E ++E K G R+
Sbjct: 244 -KGGYVEACRKLRGLCGEGGEGYSPTDILSSFFKALSVIDVRESQRIEIAKVIGLVQNRV 302
Query: 305 CDGVGSYLQLCGLLAKLS 322
G SYLQL +L ++
Sbjct: 303 LSGASSYLQLAAMLWSIA 320
>gi|292654383|ref|YP_003534280.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|448293928|ref|ZP_21484030.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|448597682|ref|ZP_21654607.1| replication factor C small subunit [Haloferax alexandrinus JCM
10717]
gi|291370302|gb|ADE02529.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|445569321|gb|ELY23895.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|445739143|gb|ELZ90652.1| replication factor C small subunit [Haloferax alexandrinus JCM
10717]
Length = 327
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 130/301 (43%), Positives = 189/301 (62%), Gaps = 5/301 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARL-GIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
W+EKYRP D+ G D V RL I RD ++P+L+ AGP G GKTTS A+A + G
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERD-DLPHLLFAGPAGVGKTTSATAIARAIYGD 75
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
++R +ELNASD+RGIDVVR++IK FA + + ++V+ LDEADS+T AQ ALRR
Sbjct: 76 DWRGNFLELNASDERGIDVVRDRIKNFA--RSSFGGHDYRVIFLDEADSLTNDAQSALRR 133
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
TME +S++TRF L+CN SSKII+PIQSRCA+ RFS L D+ I ++ + E + +
Sbjct: 134 TMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIAAAEDIEVTED 193
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
GL+A+++ A GDMR+A+N+LQA + V++E V+ + P ++ MVR ++G+F
Sbjct: 194 GLDALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPEDIEEMVRAAIDGEFT 253
Query: 254 DACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
A L+ L D G + DII L R + +++ E + M+ G A RI +G +
Sbjct: 254 AARKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDERDAVRLMERIGEADYRISEGANEQV 313
Query: 313 Q 313
Q
Sbjct: 314 Q 314
>gi|448573535|ref|ZP_21641018.1| replication factor C small subunit [Haloferax lucentense DSM 14919]
gi|445718441|gb|ELZ70131.1| replication factor C small subunit [Haloferax lucentense DSM 14919]
Length = 327
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 133/316 (42%), Positives = 195/316 (61%), Gaps = 10/316 (3%)
Query: 5 SSSSSAYDIP-----WVEKYRPTKVCDIVGNLDAVARL-GIIARDGNMPNLILAGPPGTG 58
S ++ + D P W+EKYRP D+ G D V RL I RD ++P+L+ AGP G G
Sbjct: 2 SEAAESGDAPAGREIWIEKYRPQTFDDVYGQDDIVERLRSYIERD-DLPHLLFAGPAGVG 60
Query: 59 KTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLD 118
KTTS A+A + G ++R +ELNASD+RGIDVVR++IK FA + + ++V+ LD
Sbjct: 61 KTTSATAIARAIYGDDWRGNFLELNASDERGIDVVRDRIKNFA--RSSFGGHDYRVIFLD 118
Query: 119 EADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSR 178
EADS+T AQ ALRRTME +S++TRF L+CN SSKII+PIQSRCA+ RFS L D+ I +
Sbjct: 119 EADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQ 178
Query: 179 LMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPL 238
+ + E + +GL+A+++ A GDMR+A+N+LQA + V++E V+ + P
Sbjct: 179 VRDIATAEDIEVTEDGLDALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPE 238
Query: 239 HVKNMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
++ MVR ++G+F A L+ L D G + DII L R + +++ E + M+
Sbjct: 239 DIEEMVRAAIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDERDAVRLMERI 298
Query: 298 GFAHMRICDGVGSYLQ 313
G A RI +G +Q
Sbjct: 299 GEADYRISEGANEQVQ 314
>gi|385304309|gb|EIF48332.1| dna replication factor c subunit [Dekkera bruxellensis AWRI1499]
Length = 212
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 121/182 (66%), Positives = 146/182 (80%), Gaps = 3/182 (1%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D+VGN D + L IA+ GNMP++IL+G PG GKTTSI+ LA EL
Sbjct: 11 ELPWVEKYRPRYLKDVVGNKDTIESLERIAQQGNMPHMILSGLPGIGKTTSIMCLARELF 70
Query: 72 GPN---YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQ 128
+ + A++ELNASDDRGIDVVRN+IK FAQKKV+LPP + K+VVLDEADSMT AQ
Sbjct: 71 HDDQKLMKNAILELNASDDRGIDVVRNQIKQFAQKKVSLPPNREKIVVLDEADSMTPXAQ 130
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKV 188
QALRRTMEIYSN+TRFA ACN SSKIIEPIQSRCAI+RFSRL DEE+L L +V +EK+
Sbjct: 131 QALRRTMEIYSNTTRFAFACNQSSKIIEPIQSRCAILRFSRLKDEEVLLALQRIVDKEKI 190
Query: 189 PY 190
+
Sbjct: 191 EF 192
>gi|85014379|ref|XP_955685.1| replication factor C [Encephalitozoon cuniculi GB-M1]
gi|74630071|sp|Q8SQM0.1|RFC4_ENCCU RecName: Full=Replication factor C subunit 4; Short=Replication
factor C4
gi|19171379|emb|CAD27104.1| REPLICATION FACTOR C (ACTIVATOR 1) 37kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
Length = 309
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 130/303 (42%), Positives = 192/303 (63%), Gaps = 9/303 (2%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY 75
V KY+P+++ DIVGN + + ++ +MP+L+ GPPGTGKTT LA LLG
Sbjct: 5 VNKYQPSEIQDIVGNEATMELVSLMIESRDMPHLLFTGPPGTGKTTCAKILARRLLG--N 62
Query: 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTM 135
+E ++ELNASD+RGID VR IK FAQ++V + K+++LDEADSMT AQQA+RR M
Sbjct: 63 KEGLLELNASDERGIDTVRTTIKSFAQRRV--KDCEFKIIILDEADSMTTTAQQAMRRVM 120
Query: 136 EIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGL 195
EI+S+ RF L CNV +KI EPIQSRCAI+RF R+ IL RL + + E + E L
Sbjct: 121 EIHSSECRFILICNVFTKIFEPIQSRCAILRFDRIEQSVILKRLKEISEGEGIRITAEAL 180
Query: 196 EAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDA 255
+ ++ +DGDMRQ+LN LQA + V+Q+ + K+ P P ++ +++ +L+ + ++A
Sbjct: 181 DLVVELSDGDMRQSLNILQACINSPGTVDQDYIIKIIGLPSPKRIEKVLQRLLKREVEEA 240
Query: 256 CSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLC 315
++++ + P D+I + FR KN E E LK+ G A++RI +GV S LQ
Sbjct: 241 LEMFDEIWEEKFDPLDLINSFFRAAKNMESYELLKV-----IGLANLRISEGVNSRLQFY 295
Query: 316 GLL 318
G+
Sbjct: 296 GMF 298
>gi|305663891|ref|YP_003860179.1| replication factor C small subunit [Ignisphaera aggregans DSM
17230]
gi|304378460|gb|ADM28299.1| replication factor C small subunit [Ignisphaera aggregans DSM
17230]
Length = 323
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 142/318 (44%), Positives = 198/318 (62%), Gaps = 9/318 (2%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++ W EKYRP + +IV + V RL + NMP+L+ AGPPGTGKTT+ LALAH+L
Sbjct: 2 ELLWAEKYRPKTLREIVNQEEIVNRLMKFVEEKNMPHLLFAGPPGTGKTTAALALAHDLY 61
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQ 129
G +R ++ELNASD+RGI V+R+K+K FA+ K+ PG K+V+LDEAD+MTA AQQ
Sbjct: 62 GDEWRRYLLELNASDERGIAVIRSKVKEFARSKL---PGDIPFKIVILDEADNMTADAQQ 118
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRR ME+Y +TRF L N SKII+PIQSRCA RF+ L E++ SRL + ++EKV
Sbjct: 119 ALRRIMEMYVETTRFILIANYPSKIIDPIQSRCASFRFTPLKREDVTSRLRWICEQEKVK 178
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
+GL+ I + GDMR+A+N LQ+ S V NV+KV HP V+ ++ L
Sbjct: 179 CDEDGLDVIYELSGGDMRKAINILQSA-SALGEVTVSNVYKVVGLAHPKEVREIITLALS 237
Query: 250 GKFDDACSGLKQLYDL-GYSPTDIITTLFRII--KNYEMAEHLKLEFMKEAGFAHMRICD 306
GKF +A L L + G S DII + R I + ++ E +++ G RI +
Sbjct: 238 GKFIEARDKLHNLMIVYGLSGVDIIKQMHREIFSADLKIPEDIRVILADYIGEIQFRIVE 297
Query: 307 GVGSYLQLCGLLAKLSIV 324
G +QL LLAK++++
Sbjct: 298 GADDEIQLSALLAKMALL 315
>gi|448531306|ref|ZP_21620993.1| replication factor C small subunit [Halorubrum hochstenium ATCC
700873]
gi|445707263|gb|ELZ59121.1| replication factor C small subunit [Halorubrum hochstenium ATCC
700873]
Length = 327
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 133/302 (44%), Positives = 191/302 (63%), Gaps = 7/302 (2%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARL-GIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
W+EKYRP + DI G + V RL IA+D ++P+L+ +GP G GKTT+ A+A E+ G
Sbjct: 18 WIEKYRPQTLDDIHGQSEIVERLQSYIAQD-DVPHLLFSGPAGIGKTTAATAIAREIYGE 76
Query: 74 -NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
N+R +ELNASD RGIDVVR++IK FA+ G ++V LDEADS+T AQ ALR
Sbjct: 77 DNWRGNFLELNASDQRGIDVVRDRIKGFARSSF---GGDFRIVFLDEADSLTDDAQSALR 133
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME +S++TRF L+CN SSKII+PIQSRCA+ RFS LSDE + + + E +
Sbjct: 134 RTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAEDIEVTD 193
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
EG++A+++ ADGDMR+A+N+LQA + V++E V+ + P +++MV + L G F
Sbjct: 194 EGIDALVYAADGDMRRAINSLQAAATTGDVVDEEAVYAITATARPEEIESMVTDALNGDF 253
Query: 253 DDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A S L L + G + D+I L R + +E++E + M+ G A RI +G
Sbjct: 254 ARARSTLDTLLTETGMAGGDVIDQLHRSVWEFELSEREAVRLMERIGEADYRIAEGANEQ 313
Query: 312 LQ 313
+Q
Sbjct: 314 VQ 315
>gi|345006147|ref|YP_004809000.1| replication factor C small subunit [halophilic archaeon DL31]
gi|344321773|gb|AEN06627.1| Replication factor C small subunit [halophilic archaeon DL31]
Length = 327
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 130/313 (41%), Positives = 194/313 (61%), Gaps = 4/313 (1%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A + S + +I W+EKYRP + DI G + + RL G +P+L+ +GP G GKT+
Sbjct: 4 ADAESGGTGREI-WIEKYRPQTLEDIHGQEETIERLQSYIAGGELPHLLFSGPAGIGKTS 62
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
S A+A E+ G ++R +ELNASD+RGIDVVR++IK FA + ++++ LDEAD
Sbjct: 63 SATAIAREIYGDDWRGNFLELNASDERGIDVVRDRIKSFA--RSAFGGHDYRIIFLDEAD 120
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
S+T+ AQ ALRRTME +S++TRF L+CN SSKII+PIQSRCA+ RFS LSDE I ++L
Sbjct: 121 SLTSDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAIANQLGE 180
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ + E + EG +A+++ A+GDMR+ +N+LQA + V+ E V+ V P ++
Sbjct: 181 IAEIEAIEVTDEGFDALVYAANGDMRRGINSLQAAATTGDVVDAEAVYAVTATARPEDIE 240
Query: 242 NMVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
MV ++G F A + L L D+G + DII L R +E+++ + M+ G A
Sbjct: 241 EMVAAAVDGDFPKARATLDTLLTDVGMAGGDIIDQLHRSAWEFELSDRAVVRLMERLGEA 300
Query: 301 HMRICDGVGSYLQ 313
RI +G +Q
Sbjct: 301 DYRIAEGANEQVQ 313
>gi|448582711|ref|ZP_21646215.1| replication factor C small subunit [Haloferax gibbonsii ATCC 33959]
gi|445732359|gb|ELZ83942.1| replication factor C small subunit [Haloferax gibbonsii ATCC 33959]
Length = 327
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 132/316 (41%), Positives = 195/316 (61%), Gaps = 10/316 (3%)
Query: 5 SSSSSAYDIP-----WVEKYRPTKVCDIVGNLDAVARL-GIIARDGNMPNLILAGPPGTG 58
S ++ + D P W+EKYRP D+ G D V RL I RD ++P+L+ AGP G G
Sbjct: 2 SEAAESGDAPAGREIWIEKYRPQTFDDVYGQDDIVERLRSYIERD-DLPHLLFAGPAGVG 60
Query: 59 KTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLD 118
KTTS A+A + G ++R +ELNASD+RGIDVVR++IK FA + + ++V+ LD
Sbjct: 61 KTTSATAIARAIYGDDWRGNFLELNASDERGIDVVRDRIKNFA--RSSFGGHDYRVIFLD 118
Query: 119 EADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSR 178
EADS+T AQ ALRRTME +S++TRF L+CN SSKII+PIQSRCA+ RFS L D+ + +
Sbjct: 119 EADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQ 178
Query: 179 LMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPL 238
+ + E + +GL+A+++ A GDMR+A+N+LQA + V++E V+ + P
Sbjct: 179 VRDIAAAEDIEVTEDGLDALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPE 238
Query: 239 HVKNMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
++ MVR ++G+F A L+ L D G + DII L R + +++ E + M+
Sbjct: 239 DIEEMVRAAIDGEFTTARKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDEREAVRLMERI 298
Query: 298 GFAHMRICDGVGSYLQ 313
G A RI +G +Q
Sbjct: 299 GEADYRISEGANEQVQ 314
>gi|396082076|gb|AFN83688.1| replication factor C [Encephalitozoon romaleae SJ-2008]
Length = 309
Score = 250 bits (639), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 131/303 (43%), Positives = 188/303 (62%), Gaps = 9/303 (2%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY 75
V KYRP V DIVGN + + +I +MP+L+L+GPPGTGKTT LA +LL PN
Sbjct: 5 VNKYRPNGVQDIVGNHTTIELIALIIESRDMPHLLLSGPPGTGKTTCAKILARKLL-PN- 62
Query: 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTM 135
+E ++ELNASD+RGID VR IK FAQ+++ K+++LDEADSMTA AQQA+RR M
Sbjct: 63 KEGLLELNASDERGIDTVRTTIKSFAQRRI--KDCGFKIIILDEADSMTATAQQAMRRVM 120
Query: 136 EIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGL 195
EI+S+ RF L CN +KI EPIQSRCAI+ F R+ IL RL + +E + E L
Sbjct: 121 EIHSSECRFILICNTLTKIFEPIQSRCAILMFERIDHSTILGRLREISNDEGIKINREAL 180
Query: 196 EAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDA 255
+ I+ +DGDMRQ+LN LQA + ++Q + K+ P P ++ ++ ++E ++A
Sbjct: 181 DLIVELSDGDMRQSLNILQACINSSETIDQNRIVKIIGLPSPKRIEKVLEKLMENNVEEA 240
Query: 256 CSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLC 315
+++D + P D+I + F+ KN E + +K G A++RI +GV S LQ
Sbjct: 241 LEMFDKIWDEKFDPLDLIGSFFKAAKNME-----NYDLLKVIGLANLRISEGVNSRLQFY 295
Query: 316 GLL 318
G+
Sbjct: 296 GMF 298
>gi|389845694|ref|YP_006347933.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|448616684|ref|ZP_21665394.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|388243000|gb|AFK17946.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|445751339|gb|EMA02776.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
Length = 330
Score = 250 bits (639), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 134/316 (42%), Positives = 194/316 (61%), Gaps = 9/316 (2%)
Query: 5 SSSSSAYDIP-----WVEKYRPTKVCDIVGNLDAVARL-GIIARDGNMPNLILAGPPGTG 58
S ++ + D P W+EKYRP + DI G + V RL I RD ++P+L+ AGP G G
Sbjct: 4 SEAAESGDAPAGREIWIEKYRPQTLDDIYGQEEIVERLRSYIERD-DLPHLLFAGPAGVG 62
Query: 59 KTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLD 118
KTTS A+A L G ++R +ELNASD+RGIDVVR++IK FA+ P + ++ LD
Sbjct: 63 KTTSATAIARTLYGDDWRGNFLELNASDERGIDVVRDRIKNFARSSFN-PERGYTIIFLD 121
Query: 119 EADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSR 178
EADS+T AQ ALRRTME +S+ TRF L+CN SSKII+PIQSRCA+ RFS L D+ I +
Sbjct: 122 EADSLTNDAQSALRRTMEEFSDKTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQ 181
Query: 179 LMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPL 238
+ + E + GL+A+++ A GDMR+A+N+LQA + V++E V+ + P
Sbjct: 182 TRDIAEAEGIELTEGGLDALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYLITSTARPE 241
Query: 239 HVKNMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
++ MVR ++G+F A L+ L D G + DII L R + ++++ E + M+
Sbjct: 242 DIEKMVRAAIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWDFDLDERDAVHLMERI 301
Query: 298 GFAHMRICDGVGSYLQ 313
G A RI +G +Q
Sbjct: 302 GEADYRISEGANEQVQ 317
>gi|448434836|ref|ZP_21586534.1| replication factor C small subunit [Halorubrum tebenquichense DSM
14210]
gi|445684459|gb|ELZ36835.1| replication factor C small subunit [Halorubrum tebenquichense DSM
14210]
Length = 327
Score = 250 bits (639), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 133/302 (44%), Positives = 191/302 (63%), Gaps = 7/302 (2%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARL-GIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
W+EKYRP + DI G + V RL IA+D ++P+L+ +GP G GKTT+ A+A E+ G
Sbjct: 18 WIEKYRPQTLDDIHGQEEIVERLQSYIAQD-DVPHLLFSGPAGIGKTTAATAIAREIYGE 76
Query: 74 -NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
N+R +ELNASD RGIDVVR++IK FA+ G ++V LDEADS+T AQ ALR
Sbjct: 77 DNWRGNFLELNASDQRGIDVVRDRIKGFARSSF---GGDFRIVFLDEADSLTDDAQSALR 133
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME +S++TRF L+CN SSKII+PIQSRCA+ RFS LSDE + + + E +
Sbjct: 134 RTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAEDIEVTD 193
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
EG++A+++ ADGDMR+A+N+LQA + V++E V+ + P +++MV + L G F
Sbjct: 194 EGIDALVYAADGDMRRAINSLQAAATTGDVVDEEAVYAITATARPEEIESMVTDALNGDF 253
Query: 253 DDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A S L L + G + D+I L R + +E++E + M+ G A RI +G
Sbjct: 254 ARARSTLDTLLTETGMAGGDVIDQLHRSVWEFELSEREAVRLMERIGEADYRIAEGANEQ 313
Query: 312 LQ 313
+Q
Sbjct: 314 VQ 315
>gi|448579007|ref|ZP_21644323.1| replication factor C small subunit [Haloferax larsenii JCM 13917]
gi|445724360|gb|ELZ75993.1| replication factor C small subunit [Haloferax larsenii JCM 13917]
Length = 329
Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 131/316 (41%), Positives = 196/316 (62%), Gaps = 10/316 (3%)
Query: 5 SSSSSAYDIP-----WVEKYRPTKVCDIVGNLDAVARL-GIIARDGNMPNLILAGPPGTG 58
S ++ + D P W+EKYRP + D+ G + V RL I RD ++P+L+ AGP G G
Sbjct: 4 SEAAESGDAPAGREIWIEKYRPQTLDDVYGQEEIVERLRSYIERD-DLPHLLFAGPAGVG 62
Query: 59 KTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLD 118
KTTS A+A + G ++R +ELNASD RGIDVVR++IK FA + + ++++ LD
Sbjct: 63 KTTSATAIARAIYGDDWRGNFLELNASDQRGIDVVRDRIKNFA--RSSFGGHDYRIIFLD 120
Query: 119 EADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSR 178
EADS+T AQ ALRRTME +S++TRF L+CN SSKII+PIQSRCA+ RFS L D+ I +
Sbjct: 121 EADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQ 180
Query: 179 LMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPL 238
+ E + +GL+A+++ A GDMR+A+N+LQA + V++E V+ + P
Sbjct: 181 TRDIAAAEGIELTEDGLDALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPE 240
Query: 239 HVKNMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
++ MVR+ ++G+F A L+ L D G + DII L R + ++++ E + M+
Sbjct: 241 DIEQMVRDAIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWDFDLDERAAVRLMERI 300
Query: 298 GFAHMRICDGVGSYLQ 313
G A RI +G +Q
Sbjct: 301 GEADYRISEGANEQVQ 316
>gi|167396191|ref|XP_001741947.1| replication factor C subunit [Entamoeba dispar SAW760]
gi|165893256|gb|EDR21578.1| replication factor C subunit, putative [Entamoeba dispar SAW760]
Length = 315
Score = 250 bits (638), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 133/310 (42%), Positives = 194/310 (62%), Gaps = 5/310 (1%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
IPWVEKYRP + +I+GN+D + L P+L+L G PG GKTTSI LAHELL
Sbjct: 7 IPWVEKYRPKLLDEIIGNVDIIKTLKSFRDSKQFPHLLLCGQPGIGKTTSIHCLAHELLK 66
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
Y+EAV+ELNASD+RGI+ +R+ IK F +KK+ LP K+V+LDEADSMT A QALR
Sbjct: 67 DRYKEAVLELNASDERGIETIRSTIKSFCEKKLVLPDNLPKIVILDEADSMTTAAFQALR 126
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTMEI+S +TRF LACN KIIEPIQSRCA + F L +EE+++R+ + + E V
Sbjct: 127 RTMEIHSKTTRFVLACNTPEKIIEPIQSRCARLTFRPLGEEELMNRIKEIARCENVDIED 186
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+ ++A+ ++GDMR+A+N LQ + +E V++ D P ++ ++ L+ F
Sbjct: 187 DAVKALEIVSEGDMRKAINALQTCAIIQGRITKEQVYQRNDLPSADNIIQAIQLCLKKDF 246
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAG-FAHMRICDGVGSY 311
D A +K++ LG+ DI+ + R+ + +E +++ + A F R V S
Sbjct: 247 DGALIEIKKVQQLGFDGNDIMDMIVRMFSKIDASEEIRVRLYEIAAPFLIHR----VNSN 302
Query: 312 LQLCGLLAKL 321
+Q+ GL+AK+
Sbjct: 303 VQVYGLMAKI 312
>gi|20089555|ref|NP_615630.1| replication factor C small subunit [Methanosarcina acetivorans C2A]
gi|42559497|sp|Q8TSX5.1|RFCS_METAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|19914469|gb|AAM04110.1| replication factor C, small subunit [Methanosarcina acetivorans
C2A]
Length = 338
Score = 250 bits (638), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 134/328 (40%), Positives = 199/328 (60%), Gaps = 21/328 (6%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ + G + + RL N+P+L+ +GPPG GKT S +++A E+ G +
Sbjct: 15 WIEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74
Query: 75 -YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQAL 131
+RE ELNASD+RGID+VRNKIK FA+ T P G K++ LDEAD++TA AQ AL
Sbjct: 75 LWRENFTELNASDERGIDIVRNKIKNFAK---TAPIGGAPFKIIFLDEADALTADAQSAL 131
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTME +S++ RF L+CN SSKIIEPIQSRCA+ RF RLSDE I RL + ++ +
Sbjct: 132 RRTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLEYIAGDQGLSIT 191
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGF----RFVNQENVFKVCDQPHPLHVKNMVRNV 247
G EA+I+ A GDMR+A+N+LQA + F + +++E +++ +P +KN++
Sbjct: 192 EGGYEALIYVAQGDMRKAVNSLQA--AAFIDTDKSISRETIYRTTATANPEEIKNLIETA 249
Query: 248 LEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYE--------MAEHLKLEFMKEAG 298
L G F A L + LY+ G S DI+ ++R++ + + E + + G
Sbjct: 250 LRGNFRIARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMVLDLGLTERDIVALVDVIG 309
Query: 299 FAHMRICDGVGSYLQLCGLLAKLSIVRE 326
R+ +G +QL LLA ++ RE
Sbjct: 310 ETDFRLTEGASEKIQLEALLAHFALSRE 337
>gi|448633051|ref|ZP_21674049.1| replication factor C small subunit [Haloarcula vallismortis ATCC
29715]
gi|445752408|gb|EMA03832.1| replication factor C small subunit [Haloarcula vallismortis ATCC
29715]
Length = 325
Score = 250 bits (638), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 123/321 (38%), Positives = 200/321 (62%), Gaps = 3/321 (0%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
+ S S + + W+EKYRP + D++G+ + V RL ++ +++ +GP GTGKTT
Sbjct: 4 AESESRAGREEVWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTC 63
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
A+A EL G ++RE +ELNASD+RGIDVVR++IK FA + + +++++ LDEAD+
Sbjct: 64 ATAIARELYGDDWREHFLELNASDERGIDVVRDRIKNFA--RTSFGGVEYRIIFLDEADA 121
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
+T+ AQ ALRRTME +SN+ RF L+CN SS+II+PIQSRCA+ RFS L+D+ + + +
Sbjct: 122 LTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNI 181
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
+E + +GL+A+++ ADGDMR+A+N LQA V++ V+ + P ++
Sbjct: 182 AAQEDIELTEDGLDALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRT 241
Query: 243 MVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAH 301
MV++ L+G F + + L +L + G + D+I L R I +++ + + ++ G
Sbjct: 242 MVQSALDGDFTASRATLDRLLTEEGIAGGDVIDQLHRSIWEFDIDDEAAVRVLERIGETD 301
Query: 302 MRICDGVGSYLQLCGLLAKLS 322
RI G +QL +LA L+
Sbjct: 302 YRITRGANERVQLEAMLASLA 322
>gi|448543893|ref|ZP_21625354.1| replication factor C small subunit [Haloferax sp. ATCC BAA-646]
gi|448551053|ref|ZP_21629195.1| replication factor C small subunit [Haloferax sp. ATCC BAA-645]
gi|448558572|ref|ZP_21633129.1| replication factor C small subunit [Haloferax sp. ATCC BAA-644]
gi|445706035|gb|ELZ57922.1| replication factor C small subunit [Haloferax sp. ATCC BAA-646]
gi|445710609|gb|ELZ62407.1| replication factor C small subunit [Haloferax sp. ATCC BAA-645]
gi|445712324|gb|ELZ64106.1| replication factor C small subunit [Haloferax sp. ATCC BAA-644]
Length = 327
Score = 250 bits (638), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 132/316 (41%), Positives = 195/316 (61%), Gaps = 10/316 (3%)
Query: 5 SSSSSAYDIP-----WVEKYRPTKVCDIVGNLDAVARL-GIIARDGNMPNLILAGPPGTG 58
S ++ + D P W+EKYRP D+ G D V RL I RD ++P+L+ AGP G G
Sbjct: 2 SEAAESGDAPTGREIWIEKYRPQTFDDVYGQDDIVERLRSYIERD-DLPHLLFAGPAGVG 60
Query: 59 KTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLD 118
KTTS A+A + G ++R +ELNASD+RGIDVVR++IK FA + + ++V+ LD
Sbjct: 61 KTTSATAIARAIYGDDWRGNFLELNASDERGIDVVRDRIKNFA--RSSFGGHDYRVIFLD 118
Query: 119 EADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSR 178
EADS+T AQ ALRRTME +S++TRF L+CN SSKII+PIQSRCA+ RFS L D+ + +
Sbjct: 119 EADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQ 178
Query: 179 LMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPL 238
+ + E + +GL+A+++ A GDMR+A+N+LQA + V++E V+ + P
Sbjct: 179 VRDIAAAEDIEVTEDGLDALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPE 238
Query: 239 HVKNMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
++ MVR ++G+F A L+ L D G + DII L R + +++ E + M+
Sbjct: 239 DIEEMVRAAIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDERDAVRLMERI 298
Query: 298 GFAHMRICDGVGSYLQ 313
G A RI +G +Q
Sbjct: 299 GEADYRISEGANEQVQ 314
>gi|327311922|ref|YP_004338819.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
gi|326948401|gb|AEA13507.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
Length = 322
Score = 249 bits (637), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 139/313 (44%), Positives = 188/313 (60%), Gaps = 6/313 (1%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++ W EKYRP ++V + ARL + GNMP+L+ GPPGTGKTT L LA EL
Sbjct: 3 ELFWFEKYRPRSFEEVVDLEEVKARLKEFVKAGNMPHLLFYGPPGTGKTTMALVLARELY 62
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQ 129
G +RE +ELNASD+RGI+V+R ++K FA+ T P GK K+V+LDEAD+MT+ AQQ
Sbjct: 63 GDAWRENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQ 119
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRR ME+Y+N+TRF L N S IIEPIQSRCAI RFS L E +LSRL + ++E V
Sbjct: 120 ALRRIMEMYANTTRFILLANYVSGIIEPIQSRCAIFRFSPLPKEAVLSRLRFIAEQEGVK 179
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
E L+AI GDMR+A+ LQ S + V++E V K P ++ ++ +
Sbjct: 180 ISQEALDAIFDFTQGDMRRAITALQIASSMTKAVDEEAVAKALGYVSPSMLRQIIAEAIG 239
Query: 250 GKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGV 308
G F A S + L D G +++ + R + ++ EHLK + E AH I G
Sbjct: 240 GSFSKAMSQIYGLVADGGVGELELVRQIHREVLRLDVPEHLKPDLAFEVSKAHYAILRGA 299
Query: 309 GSYLQLCGLLAKL 321
LQ+ GLLAK+
Sbjct: 300 NGLLQIYGLLAKI 312
>gi|433431944|ref|ZP_20407710.1| replication factor C small subunit [Haloferax sp. BAB2207]
gi|432193760|gb|ELK50452.1| replication factor C small subunit [Haloferax sp. BAB2207]
Length = 327
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 129/301 (42%), Positives = 189/301 (62%), Gaps = 5/301 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARL-GIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
W+EKYRP D+ G D V RL I RD ++P+L+ AGP G GKTTS A+A + G
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERD-DLPHLLFAGPAGVGKTTSATAIARAIYGD 75
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
++R +ELNASD+RGIDVVR++IK FA + + ++V+ LDEADS+T AQ ALRR
Sbjct: 76 DWRGNFLELNASDERGIDVVRDRIKNFA--RSSFGGHDYRVIFLDEADSLTNDAQSALRR 133
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
TME +S++TRF L+CN SSKII+PIQSRCA+ RFS L D+ I ++ + E + +
Sbjct: 134 TMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIAAAEDIEVTED 193
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
GL+A+++ A GDMR+A+N+LQA + V+++ V+ + P ++ MVR ++G+F
Sbjct: 194 GLDALVYAAGGDMRRAINSLQAAATTGEVVDEDAVYMITSTARPEDIEEMVRAAIDGEFT 253
Query: 254 DACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
A L+ L D G + DII L R + +++ E + M+ G A RI +G +
Sbjct: 254 AARKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDERDAVRLMERIGEADYRISEGANEQV 313
Query: 313 Q 313
Q
Sbjct: 314 Q 314
>gi|452205944|ref|YP_007486066.1| replication factor C small subunit [Natronomonas moolapensis
8.8.11]
gi|452082044|emb|CCQ35295.1| replication factor C small subunit [Natronomonas moolapensis
8.8.11]
Length = 324
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 125/300 (41%), Positives = 187/300 (62%), Gaps = 3/300 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + +IVG+ RL ++P+L+ AGP GTGKTTS +A+A E+ G +
Sbjct: 14 WIEKYRPQALDEIVGHEGITERLKQYINQQDLPHLLFAGPAGTGKTTSSIAVAKEIYGDD 73
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+RE +ELNASD RGIDVVR++IK FA + + H+V+ LDEAD++T+ AQ ALRRT
Sbjct: 74 WRENFLELNASDQRGIDVVRDRIKSFA--RASFGGYDHRVIFLDEADALTSEAQSALRRT 131
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +S++TRF L+CN SS+II+PIQSRCA+ RFS L + I ++ + + E + +G
Sbjct: 132 MEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGEAAIEEQIEAIAEAEGIEITDDG 191
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+++ A GDMR+A+N LQA V++E V+ + P ++ MV L+G F
Sbjct: 192 MDALVYAAAGDMRKAINGLQAAAVVGGVVDEEAVYTITSTARPEEIETMVSAALDGDFTA 251
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L L D+G + DII + R + +++ E + M+ G A RI G +Q
Sbjct: 252 ARAQLDTLLTDVGIAGGDIIDQMHRSVWEFDLGEREAVRLMERVGEADYRITAGANEQIQ 311
>gi|67470376|ref|XP_651156.1| Activator 1 40 kDa subunit [Entamoeba histolytica HM-1:IMSS]
gi|56467854|gb|EAL45769.1| Activator 1 40 kDa subunit, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449710456|gb|EMD49526.1| activator 1 40 kDa subunit, putative [Entamoeba histolytica KU27]
Length = 315
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 133/310 (42%), Positives = 193/310 (62%), Gaps = 5/310 (1%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
IPWVEKYRP + +I+GN+D + L P+L+L G PG GKTTSI LAHELL
Sbjct: 7 IPWVEKYRPKLLDEIIGNVDIIKTLKSFRDSKQFPHLLLCGQPGIGKTTSIHCLAHELLK 66
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
Y++AV+ELNASD+RGI+ +R+ IK F +KK+ LP K+V+LDEADSMT A QALR
Sbjct: 67 DRYKDAVLELNASDERGIETIRSTIKSFCEKKLVLPDNLPKIVILDEADSMTTAAFQALR 126
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTMEI+S +TRF LACN KIIEPIQSRCA + F L +EE+++R+ + E V
Sbjct: 127 RTMEIHSKTTRFVLACNTPEKIIEPIQSRCARLTFRPLGEEELMNRIKEIAHCEGVDIED 186
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+ ++A+ ++GDMR+A+N LQ + +E V++ D P ++ ++ L+ F
Sbjct: 187 DAVKALEIVSEGDMRKAINALQTCAIIQGKITKEQVYQRNDLPSADNIIQAIQLCLKKDF 246
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAG-FAHMRICDGVGSY 311
D A +K++ LG+ DII + R+ + +E +++ + A F R V S
Sbjct: 247 DGALIEIKKVQQLGFDGNDIIDMIVRMFSKIDASEEIRVRLYEIAAPFLIHR----VNSN 302
Query: 312 LQLCGLLAKL 321
+Q+ GL+AK+
Sbjct: 303 VQVYGLMAKI 312
>gi|344213231|ref|YP_004797551.1| replication factor C small subunit [Haloarcula hispanica ATCC
33960]
gi|343784586|gb|AEM58563.1| replication factor C small subunit [Haloarcula hispanica ATCC
33960]
Length = 407
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 123/309 (39%), Positives = 195/309 (63%), Gaps = 3/309 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + D++G+ + V RL ++ +++ +GP GTGKTT A+A EL G +
Sbjct: 98 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGED 157
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+RE +ELNASD+RGIDVVR++IK FA + + +++++ LDEAD++T+ AQ ALRRT
Sbjct: 158 WREHFLELNASDERGIDVVRDRIKNFA--RTSFGGVEYRIIFLDEADALTSDAQSALRRT 215
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +SN+ RF L+CN SS+II+PIQSRCA+ RFS L+D+ + + + EE + +G
Sbjct: 216 MEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAEEDIELTEDG 275
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
L+A+++ ADGDMR+A+N LQA V++ V+ + P ++ MV++ L+G F
Sbjct: 276 LDALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDFTA 335
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
+ + L +L + G + DII L R I +++ + + ++ G RI G +Q
Sbjct: 336 SRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDEAAVRVLERIGETDYRITRGANERVQ 395
Query: 314 LCGLLAKLS 322
L +LA L+
Sbjct: 396 LEAMLASLA 404
>gi|448611174|ref|ZP_21661808.1| replication factor C small subunit [Haloferax mucosum ATCC
BAA-1512]
gi|445743606|gb|ELZ95087.1| replication factor C small subunit [Haloferax mucosum ATCC
BAA-1512]
Length = 379
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 131/316 (41%), Positives = 196/316 (62%), Gaps = 10/316 (3%)
Query: 5 SSSSSAYDIP-----WVEKYRPTKVCDIVGNLDAVARL-GIIARDGNMPNLILAGPPGTG 58
S ++ + D+P W+EKYRP + DI G + V RL I RD ++P+L+ AGP G G
Sbjct: 54 SEAAESGDVPAGREIWIEKYRPQTLDDIYGQEEIVERLCSYIERD-DLPHLLFAGPAGVG 112
Query: 59 KTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLD 118
KTTS A+A + G ++R +ELNASD RGIDVVR++IK FA + + ++++ LD
Sbjct: 113 KTTSATAIARAIYGDDWRGNFLELNASDQRGIDVVRDRIKNFA--RSSFGGHDYRIIFLD 170
Query: 119 EADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSR 178
EADS+T AQ ALRRTME +S++TRF L+CN SSKII+PIQSRCA+ RFS L D+ I +
Sbjct: 171 EADSLTNDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQ 230
Query: 179 LMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPL 238
+ + E++ +GL+A+++ A GDMR+A+N+LQA + V++E V+ + P
Sbjct: 231 TRDIAETEEIELTEDGLDALVYAAGGDMRRAINSLQAAATTGEVVDEEAVYMITSTARPE 290
Query: 239 HVKNMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
++ MVR ++G+F A L+ L D G + DII L R + +++ E + M+
Sbjct: 291 DIEKMVRAAIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDERAAVRLMERI 350
Query: 298 GFAHMRICDGVGSYLQ 313
G RI +G +Q
Sbjct: 351 GETDYRISEGANEQVQ 366
>gi|386002033|ref|YP_005920332.1| replication factor C small subunit [Methanosaeta harundinacea 6Ac]
gi|357210089|gb|AET64709.1| Replication factor C small subunit [Methanosaeta harundinacea 6Ac]
Length = 368
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 130/314 (41%), Positives = 191/314 (60%), Gaps = 6/314 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + D+VG + V RL R N+P+L+ +GPPG GKT + +++ EL G
Sbjct: 51 WIEKYRPMSLDDVVGQEEIVKRLKSYVRSRNVPHLLFSGPPGVGKTAAAISMVRELFGEE 110
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+R +ELNASD+RGIDVVR+K+K FA + L + KV+ LDEAD++T AQ ALRRT
Sbjct: 111 WRGNFIELNASDERGIDVVRHKVKDFA-RIAPLGNAEFKVIFLDEADALTNDAQSALRRT 169
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME YS+ RF L+CN SSKIIEPIQSRCA+ RF LS+E + R+ + + E V PEG
Sbjct: 170 MERYSSICRFVLSCNYSSKIIEPIQSRCAVYRFRSLSEEAVSERMKTIAEAEGVKVTPEG 229
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
+ AI++ A GDMR+A+N LQA V +E ++++ P ++++++ L G F
Sbjct: 230 MRAIVYVARGDMRKAINALQAASLMEESVTEETIYQITATARPEQIRDLMKTALAGNFTQ 289
Query: 255 ACSGLKQLYDL-GYSPTDIITTLFR----IIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
A S L L + G S D+I + R ++ ++E++ + M G R+ +G
Sbjct: 290 ARSLLDDLLLVQGLSGEDVIIQIHRQTLSLLDSHELSGPTLVRLMDRIGEIDFRMTEGAN 349
Query: 310 SYLQLCGLLAKLSI 323
+QL LLA ++
Sbjct: 350 ERIQLEALLAYFAL 363
>gi|21227923|ref|NP_633845.1| replication factor C small subunit [Methanosarcina mazei Go1]
gi|42559488|sp|Q8PVY4.1|RFCS_METMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|20906344|gb|AAM31517.1| replication factor C subunit [Methanosarcina mazei Go1]
Length = 338
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 133/328 (40%), Positives = 201/328 (61%), Gaps = 21/328 (6%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ + G + + RL N+P+L+ +GPPG GKT S +++A E+ G +
Sbjct: 15 WIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74
Query: 75 -YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQAL 131
+RE ELNASD+RGID+VRNKIK FA+ T P G K++ LDEAD++T+ AQ AL
Sbjct: 75 LWRENFTELNASDERGIDIVRNKIKNFAK---TAPMGGAPFKIIFLDEADALTSDAQSAL 131
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTME +S++ RF L+CN SSKIIEPIQSRCA+ RF RLSD+ I RL + +E+ +
Sbjct: 132 RRTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKEQDLSIT 191
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGF----RFVNQENVFKVCDQPHPLHVKNMVRNV 247
G EA+I+ A GDMR+A+N+LQA + F + +++E +++ +P +KN++
Sbjct: 192 DGGYEALIYVAQGDMRKAVNSLQA--AAFIDVEKPISRETIYRTTATANPEEIKNLIETA 249
Query: 248 LEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYE--------MAEHLKLEFMKEAG 298
L G F A L + LY+ G S DI+ ++R++ + ++E + + G
Sbjct: 250 LRGNFRVARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMILDLGLSERDIVGLVDIIG 309
Query: 299 FAHMRICDGVGSYLQLCGLLAKLSIVRE 326
R+ +G +QL LLA ++ RE
Sbjct: 310 ETDFRLTEGASEKIQLEALLAHFALSRE 337
>gi|385806402|ref|YP_005842800.1| replication factor C small subunit [Fervidicoccus fontis Kam940]
gi|383796265|gb|AFH43348.1| replication factor C small subunit [Fervidicoccus fontis Kam940]
Length = 326
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 138/328 (42%), Positives = 202/328 (61%), Gaps = 10/328 (3%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
S +S Y + W EKYRP + +IV + + RL ++ N P+++ AGPPGTGKTT+
Sbjct: 2 SDENSENY-LLWAEKYRPRSLDEIVDQEETIIRLKKFVKEKNAPHMLFAGPPGTGKTTAA 60
Query: 64 LALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVT--LPPGKHKVVVLDEAD 121
LA AH+L G NY++ V+ELNASD+RGIDV+R KIK FA+ V +P K+++LDE+D
Sbjct: 61 LAFAHDLYGKNYQQFVLELNASDERGIDVIRGKIKEFARTSVVGGVP---FKLIILDESD 117
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
++T+ AQQALRR ME ++ ++RF L N SKIIEPIQSR A+ RFS L E+++ RL
Sbjct: 118 NLTSDAQQALRRMMENFTLTSRFILIANYPSKIIEPIQSRTALFRFSPLKKEDVIKRLKW 177
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+++ E V Y LEA+ ++GDMR+A+N LQ+ S V + V+KV HP ++
Sbjct: 178 ILENESVSYEESALEAVFEISEGDMRKAINVLQSA-SAIGKVTVDTVYKVVGLAHPKEIR 236
Query: 242 NMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYE--MAEHLKLEFMKEAG 298
M+ L G F+ A L++L D G S D+I + + I + E ++E +KL G
Sbjct: 237 EMLNLALSGDFNGARERLRKLMMDYGLSGVDVIKQIHKEIFSNEIDLSEEMKLMIADYTG 296
Query: 299 FAHMRICDGVGSYLQLCGLLAKLSIVRE 326
RI +G +QL LA L ++R+
Sbjct: 297 EILFRITEGSDDEIQLNSFLAWLVLLRK 324
>gi|297620154|ref|YP_003708259.1| Replication factor C [Methanococcus voltae A3]
gi|297379131|gb|ADI37286.1| Replication factor C [Methanococcus voltae A3]
Length = 314
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 129/309 (41%), Positives = 192/309 (62%), Gaps = 2/309 (0%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRPT + +IVG + + RL +MP+L+ +G PG GKTT+ L LA +L G
Sbjct: 4 PWVEKYRPTTLSEIVGQKEIIERLKNYVEKQSMPHLLFSGSPGIGKTTAALCLAKDLYGD 63
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
++RE +ELN+SD+RGIDV+R K+K FA+ K + KV+ LDE+D++T+ AQ ALRR
Sbjct: 64 DWRENFLELNSSDERGIDVIRTKVKDFARTK-PIGDAPFKVIFLDESDALTSDAQNALRR 122
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
TME YS+ RF L+CN SKII PIQSRCAI RFS L E++L + + + E +
Sbjct: 123 TMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDVLDYMNYISENENITIEKS 182
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
G +AII+ ++GDMR+++N LQ + ++++ V+KV + P +K M+ + +F
Sbjct: 183 GSDAIIYVSEGDMRKSVNVLQTAAAVSNVIDEDIVYKVSSRARPDEIKKMIDLAINARFM 242
Query: 254 DACSGL-KQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
+A L K + D G DI+T +FR + ++ E+ K+ ++ RI +G +
Sbjct: 243 EAREQLYKLMIDWGMGGQDILTQVFREVPYLDIEENEKVSLIEAIAECDFRIVEGGNDRI 302
Query: 313 QLCGLLAKL 321
QL LLAKL
Sbjct: 303 QLSALLAKL 311
>gi|307596342|ref|YP_003902659.1| replication factor C [Vulcanisaeta distributa DSM 14429]
gi|307551543|gb|ADN51608.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
Length = 342
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 136/321 (42%), Positives = 195/321 (60%), Gaps = 8/321 (2%)
Query: 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH 68
S ++ WVEKYRP+++ DI+ + R+ + GNMP+++ GPPGTGKTT LA+A
Sbjct: 2 SIAELIWVEKYRPSRIDDIIDQEEVKERIKQFLKTGNMPHMLFYGPPGTGKTTMALAIAR 61
Query: 69 ELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAG 126
EL G +RE V+ELNASD+RGI +R ++K FA+ T P GK +K+V+LDEAD+MT+
Sbjct: 62 ELYGDAWRENVLELNASDERGITTIRERVKEFAR---TAPMGKAPYKLVILDEADNMTSD 118
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQQALRR ME+Y+N TRF L N S+II+PIQSRCA+ RFS L + +L RL + +E
Sbjct: 119 AQQALRRMMEMYANVTRFILIANYVSRIIDPIQSRCAMFRFSPLPKDAVLGRLREIASKE 178
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
V E LEAI + GDMR+A+N LQA + + + E ++K P + ++V
Sbjct: 179 GVKVTNEALEAIWDVSQGDMRKAINTLQAAAATAKEITPEVIYKTVGYIEPKDIVDLVNT 238
Query: 247 VLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKN--YEMAEHLKLEFMKEAGFAHMR 303
V G F A L+ L Y+ G S T+I+ + R I + + K+E + A R
Sbjct: 239 VFSGDFVKARDKLRTLMYEHGVSGTEILRAIQRQIMGGAINVPDEAKVEIAEAAADIDYR 298
Query: 304 ICDGVGSYLQLCGLLAKLSIV 324
+ +G +QL LAKL ++
Sbjct: 299 LTEGSDEEIQLSAFLAKLMLI 319
>gi|257076223|ref|ZP_05570584.1| replication factor C small subunit [Ferroplasma acidarmanus fer1]
Length = 318
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 132/311 (42%), Positives = 195/311 (62%), Gaps = 3/311 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W EKYRP+K+ D++G + RL +D N+P+LI AGP GTGKT++ +ALA L G +
Sbjct: 5 WTEKYRPSKLSDVIGEKGNINRLNAYVKDKNIPHLIFAGPQGTGKTSTAIALAISLFGDS 64
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++E MELNAS+DRGID++R+ IK FA+ + + G K++ LDEAD +T AQ ALRRT
Sbjct: 65 WKENFMELNASNDRGIDIIRDNIKNFAKIRPSNDLG-FKIIFLDEADHLTGDAQAALRRT 123
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME++ N+TRF +CN SSKII PIQSRC ++RF + E + +RL + ++E +
Sbjct: 124 MEMFYNTTRFIFSCNYSSKIIPPIQSRCVVLRFKPIDRESMKNRLKDIAKKENFEIDDDS 183
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
L+AI +DGDMR+A+N LQA + V+ ++++ + + KN++ +EG F+D
Sbjct: 184 LDAIYEISDGDMRKAVNVLQAVKLSGK-VSATAIYEISGEINRDEYKNLINMAIEGNFND 242
Query: 255 ACSGL-KQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L K L D G S DII + I+ ++A KLE + A RI +G +Q
Sbjct: 243 ARNYLDKMLIDYGLSGIDIIKGMHSSIRGEQIAYKQKLEIIMALAEAEFRIVEGGTDNIQ 302
Query: 314 LCGLLAKLSIV 324
+ LLAKLS +
Sbjct: 303 MDALLAKLSYI 313
>gi|448467531|ref|ZP_21599543.1| replication factor C small subunit [Halorubrum kocurii JCM 14978]
gi|445812407|gb|EMA62401.1| replication factor C small subunit [Halorubrum kocurii JCM 14978]
Length = 327
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 188/301 (62%), Gaps = 5/301 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP- 73
W+EKYRP + DI G + V RL ++P+L+ +GP G GKTT+ A+A ++ G
Sbjct: 18 WIEKYRPQSLDDIHGQEEIVERLQSYIEQDDIPHLLFSGPAGVGKTTASTAIARQVYGDD 77
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
N+R +ELNASD RGIDVVR++IK FA+ G ++V LDEADS+T AQ ALRR
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFARSSF---GGDFRIVFLDEADSLTDDAQSALRR 134
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
TME +S++TRF L+CN SSKII+PIQSRCA+ RFS LSD + ++ + E +
Sbjct: 135 TMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDAAVAAQTREIAAAEGIEVTDA 194
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
G++A+++ ADGDMR+A+N+LQA + V++E V+ + P +++MV N L+G F
Sbjct: 195 GVDALVYAADGDMRRAINSLQAAATTGDVVDEEAVYAITATARPEEIESMVTNALDGDFT 254
Query: 254 DACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
A + L QL + G + D+I L R + ++++E + M+ G A RI +G +
Sbjct: 255 RARATLDQLLTETGMAGGDVIDQLHRSVWEFDLSEREAVALMERIGEADYRIAEGANEQV 314
Query: 313 Q 313
Q
Sbjct: 315 Q 315
>gi|222478820|ref|YP_002565057.1| replication factor C small subunit [Halorubrum lacusprofundi ATCC
49239]
gi|222451722|gb|ACM55987.1| Replication factor C [Halorubrum lacusprofundi ATCC 49239]
Length = 327
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 128/301 (42%), Positives = 186/301 (61%), Gaps = 5/301 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP- 73
W+EKYRP + DI G V RL ++P+L+ GP GTGKTT+ A+A ++ G
Sbjct: 18 WIEKYRPQSLDDIHGQEAIVERLQSYIEQDDIPHLLFGGPAGTGKTTAATAIARQVYGDD 77
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
N+R +ELNASD RGIDVVR++IK FA+ G ++V LDEADS+T AQ ALRR
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFARSSF---GGDFRIVFLDEADSLTDEAQAALRR 134
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
TME +S++TRF L+CN SSKII+PIQSRCA+ RFS LSD + ++ + E + E
Sbjct: 135 TMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDAAVAAQTREIAAAEGIEVTDE 194
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
G++A+++ ADGDMR+A+N+LQA + V++E V+ + P +++MV N L G F
Sbjct: 195 GVDALVYAADGDMRRAINSLQAAATTGEIVDEEAVYAITATARPEEIESMVTNALHGDFT 254
Query: 254 DACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
A + L L + G + D+I L R + ++++E + M+ G A RI +G +
Sbjct: 255 RARATLDTLLTETGMAGGDVIDQLHRSVWEFDLSEREAVALMERIGEADYRIAEGANEQV 314
Query: 313 Q 313
Q
Sbjct: 315 Q 315
>gi|448732321|ref|ZP_21714602.1| replication factor C small subunit [Halococcus salifodinae DSM
8989]
gi|445804894|gb|EMA55124.1| replication factor C small subunit [Halococcus salifodinae DSM
8989]
Length = 325
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 122/308 (39%), Positives = 193/308 (62%), Gaps = 3/308 (0%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
M+ S++ ++ D W+EKYRP + ++VG+ + V RL ++P+L+ +GP G GKT
Sbjct: 1 MSESATGAAGRDEIWIEKYRPETLANVVGHENIVGRLESYVAQNDLPHLLFSGPAGVGKT 60
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TS +A+A E+ G ++RE +ELNASD+RGIDVVR++IK FA + + ++++ LDEA
Sbjct: 61 TSAMAIAREVYGDDWRENFLELNASDERGIDVVRDRIKDFA--RTSFGGYDYRIIFLDEA 118
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D++T+ AQ ALRRTME ++N+TRF L+CN SS+II+PIQSRCA+ RF L++E + +
Sbjct: 119 DALTSDAQSALRRTMEQFANNTRFILSCNYSSQIIDPIQSRCAVFRFGPLAEEAVGEYVR 178
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
V + E + +G++A+++ ADGDMR+ALN LQA + V+ E V+ + P +
Sbjct: 179 QVAEREGIEVTDDGVDALVYAADGDMRKALNGLQAAATTEGAVDDEAVYGITATARPEEI 238
Query: 241 KNMVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGF 299
+ MV L+G F A + L L D G D+I L R ++++ + + ++ G
Sbjct: 239 EAMVERALDGDFTAARAKLDDLLTDAGLGGGDVIDQLHRSAWSFDLDDAATVRLLERVGE 298
Query: 300 AHMRICDG 307
RI G
Sbjct: 299 TDYRITQG 306
>gi|218884000|ref|YP_002428382.1| replication factor C small subunit [Desulfurococcus kamchatkensis
1221n]
gi|218765616|gb|ACL11015.1| replication factor C small subunit [Desulfurococcus kamchatkensis
1221n]
Length = 326
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 136/322 (42%), Positives = 200/322 (62%), Gaps = 9/322 (2%)
Query: 8 SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
S ++ W EKYRP + ++V + V RL + N+P+++ AGPPGTGKTT LA
Sbjct: 2 SEEVELLWAEKYRPRTLDEVVNQKEVVVRLKKFVEEKNIPHMLFAGPPGTGKTTIAHCLA 61
Query: 68 HELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVT--LPPGKHKVVVLDEADSMTA 125
H+L G +YR+ ++ELNASD+R I+V+R K+K FA+ +V +P K+V+LDEAD+MTA
Sbjct: 62 HDLYGDDYRKYMLELNASDERKIEVIRGKVKEFARTRVVGDVP---FKIVLLDEADNMTA 118
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQQALRR ME+YS +TRF L N SKIIEPIQSR AI RFS LS E+++ RL +
Sbjct: 119 DAQQALRRLMELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLSREDVVGRLKYICNA 178
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
EK+ + LE I ++GDMR+A+N LQ T + V +E V+KV HP V+ M+
Sbjct: 179 EKIECAEKALETIYELSEGDMRRAINILQ-TAAALGEVVEEAVYKVLGMAHPREVREMIN 237
Query: 246 NVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRII--KNYEMAEHLKLEFMKEAGFAHM 302
L G F +A + L+ L + G S DI+ + R I ++ ++ + +++ AG
Sbjct: 238 TALAGNFTEARNKLRTLMIEYGLSGLDIVKQIHREIFSQDVKIPDEIRVLIADLAGEIQF 297
Query: 303 RICDGVGSYLQLCGLLAKLSIV 324
R+ +G +QL LA+L+++
Sbjct: 298 RLVEGADDEIQLNAFLARLALI 319
>gi|407040723|gb|EKE40291.1| replication factor C subunit 4, putative [Entamoeba nuttalli P19]
Length = 315
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 131/310 (42%), Positives = 193/310 (62%), Gaps = 5/310 (1%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
IPWVEKYRP + +I+GN+D + L P+L+L G PG GKTTSI LAHELL
Sbjct: 7 IPWVEKYRPKLLDEIIGNVDIIKTLKSFRDSKQFPHLLLCGQPGIGKTTSIHCLAHELLK 66
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
Y++AV+ELNASD+RGI+ +R+ IK F +KK+ LP K+V+LDEADSMT A QALR
Sbjct: 67 DRYKDAVLELNASDERGIETIRSTIKSFCEKKLVLPDNLPKIVILDEADSMTTAAFQALR 126
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTMEI+S +TRF LACN KIIEPIQSRCA + F L +EE+++R+ + E V
Sbjct: 127 RTMEIHSKTTRFVLACNTPEKIIEPIQSRCARLTFRPLGEEELMNRIKEIAHCEGVDIED 186
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+ ++A+ ++GDMR+A+N LQ + +E V++ D P ++ ++ L+ F
Sbjct: 187 DAVKALEIVSEGDMRKAINALQTCAIIQGKITKEQVYQRNDLPSADNIIQAIQLCLKKDF 246
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAG-FAHMRICDGVGSY 311
D A +K++ LG+ D++ + R+ + +E +++ + A F R V S
Sbjct: 247 DSALIEIKKVQQLGFDGNDVMDMIVRMFSKIDASEEIRVRLYEIAAPFLIHR----VNSN 302
Query: 312 LQLCGLLAKL 321
+Q+ GL+AK+
Sbjct: 303 VQVYGLMAKI 312
>gi|390938548|ref|YP_006402286.1| replication factor C [Desulfurococcus fermentans DSM 16532]
gi|390191655|gb|AFL66711.1| Replication factor C [Desulfurococcus fermentans DSM 16532]
Length = 326
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 136/322 (42%), Positives = 200/322 (62%), Gaps = 9/322 (2%)
Query: 8 SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
S ++ W EKYRP + ++V + V RL + N+P+++ AGPPGTGKTT LA
Sbjct: 2 SEEVELLWAEKYRPRTLDEVVNQKEVVVRLKKFVEEKNIPHMLFAGPPGTGKTTIAHCLA 61
Query: 68 HELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVT--LPPGKHKVVVLDEADSMTA 125
H+L G +YR+ ++ELNASD+R I+V+R K+K FA+ +V +P K+V+LDEAD+MTA
Sbjct: 62 HDLYGDDYRKYMLELNASDERKIEVIRGKVKEFARARVVGDVP---FKIVLLDEADNMTA 118
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQQALRR ME+YS +TRF L N SKIIEPIQSR AI RFS LS E+++ RL +
Sbjct: 119 DAQQALRRLMELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLSREDVVGRLKYICNA 178
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
EK+ + LE I ++GDMR+A+N LQ T + V +E V+KV HP V+ M+
Sbjct: 179 EKIECAEKALETIYELSEGDMRRAINILQ-TAAALGEVVEEAVYKVLGMAHPREVREMIN 237
Query: 246 NVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRII--KNYEMAEHLKLEFMKEAGFAHM 302
L G F +A + L+ L + G S DI+ + R I ++ ++ + +++ AG
Sbjct: 238 TALAGNFTEARNKLRTLMIEYGLSGLDIVKQIHREIFSQDVKIPDEIRVLIADLAGEIQF 297
Query: 303 RICDGVGSYLQLCGLLAKLSIV 324
R+ +G +QL LA+L+++
Sbjct: 298 RLVEGADDEIQLNAFLARLALI 319
>gi|304314452|ref|YP_003849599.1| replication factor C, small subunit [Methanothermobacter
marburgensis str. Marburg]
gi|302587911|gb|ADL58286.1| replication factor C, small subunit [Methanothermobacter
marburgensis str. Marburg]
Length = 317
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 128/313 (40%), Positives = 194/313 (61%), Gaps = 7/313 (2%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP K+ DIVG + RL + +MPNL+ GP G GKTT+ LALA E+LG
Sbjct: 4 PWVEKYRPQKLDDIVGQEHIIPRLKRYVEERSMPNLMFTGPAGVGKTTTALALAREILGE 63
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
+R+ +ELNASD RGID VR IK F + K P +++ LDE D+MT AQ ALRR
Sbjct: 64 YWRQNFLELNASDARGIDTVRTSIKNFCRLKPVGAP--FRIIFLDEVDNMTKDAQHALRR 121
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
ME+Y+ ++ F L+CN SSKII+PIQSRCAI RF L I+SRL + ++E + Y P+
Sbjct: 122 EMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGRHIISRLEYIAEQEGLEYEPQ 181
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
L+ +++ A+GD+R+A+N LQ+ S + + ++++V + P V+ M+ +L+GKF
Sbjct: 182 ALDTVVYFAEGDLRKAINILQSAASLGEKITESSIYEVVSRARPKDVRKMIMTILDGKFM 241
Query: 254 DACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLK----LEFMKEAGFAHMRICDGV 308
+A L+++ L G S D++T +++ + M ++ ++ ++ G RI +G
Sbjct: 242 EARDMLREIMVLQGISGEDMVTQIYQELSRLAMEGSIEGERYIKLIEAVGEYDFRIREGA 301
Query: 309 GSYLQLCGLLAKL 321
+QL LLA+
Sbjct: 302 NPRIQLEALLARF 314
>gi|325968175|ref|YP_004244367.1| replication factor C small subunit [Vulcanisaeta moutnovskia
768-28]
gi|323707378|gb|ADY00865.1| replication factor C small subunit [Vulcanisaeta moutnovskia
768-28]
Length = 338
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 136/321 (42%), Positives = 196/321 (61%), Gaps = 8/321 (2%)
Query: 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH 68
S ++ WVEKYRP+++ DI+ + R+ + + GNMP+++ GPPGTGKTT LA+A
Sbjct: 2 SIAELIWVEKYRPSRIDDIIDQEEVKERVKQLLKTGNMPHMLFYGPPGTGKTTMALAIAR 61
Query: 69 ELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAG 126
EL G +RE V+ELNASD+RGI +R ++K FA+ T P GK +K+++LDEAD+MT+
Sbjct: 62 ELYGDAWRENVLELNASDERGITTIRERVKEFAR---TAPMGKAPYKLIILDEADNMTSD 118
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQQALRR ME+Y+N TRF L N S+II+PIQSRCA+ RFS L + +L RL + E
Sbjct: 119 AQQALRRMMEMYANVTRFILIANYVSRIIDPIQSRCAMFRFSPLPKDAVLGRLRDIASRE 178
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
V E LEAI + GDMR+A+N LQA + R + E V+K P + ++V
Sbjct: 179 GVKVTDEALEAIWDISQGDMRKAINTLQAATATAREITPEVVYKTVGYIEPKDIVDLVNI 238
Query: 247 VLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKN--YEMAEHLKLEFMKEAGFAHMR 303
L G F A L+ L Y+ G S T+I+ + R I + + + K+E + A R
Sbjct: 239 ALNGDFIRARDKLRTLMYEHGVSGTEILRVIQRQIMSGAINVPDEAKVEIAETAADIDYR 298
Query: 304 ICDGVGSYLQLCGLLAKLSIV 324
+ +G +QL LA+L ++
Sbjct: 299 LTEGSDEEIQLSAFLARLMLI 319
>gi|449330253|gb|AGE96513.1| replication factor c 37kDa subunit [Encephalitozoon cuniculi]
Length = 309
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 127/303 (41%), Positives = 192/303 (63%), Gaps = 9/303 (2%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY 75
V KY+P+++ D+VGN + + ++ +MP+L+ GPPGTGKTT LA LLG
Sbjct: 5 VNKYQPSEIQDMVGNEATMELVSLMIESRDMPHLLFTGPPGTGKTTCAKILARRLLGN-- 62
Query: 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTM 135
+E ++ELNASD+RGID VR IK FAQ++V + K+++LDEADSMT AQQA+RR M
Sbjct: 63 KEGLLELNASDERGIDTVRTTIKSFAQRRV--KDCEFKIIILDEADSMTTTAQQAMRRVM 120
Query: 136 EIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGL 195
EI+S+ RF L CN+ +KI EPIQSRCAI+RF R+ IL RL + + E + E L
Sbjct: 121 EIHSSECRFILICNMFTKIFEPIQSRCAILRFDRIEQSVILKRLKEISEGEGIRITAEAL 180
Query: 196 EAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDA 255
+ ++ +DGDMRQ+LN LQA + V+Q+ + K+ P P ++ +++ +L+ + ++A
Sbjct: 181 DLVVELSDGDMRQSLNILQACINSPGTVDQDYIIKIIGLPSPKRIEKVLQRLLKREVEEA 240
Query: 256 CSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLC 315
++++ + P D+I + +R KN E E LK+ G A++RI +GV S LQ
Sbjct: 241 LEMFDEIWEEKFDPLDLINSFYRAAKNMESYELLKV-----IGLANLRISEGVNSRLQFY 295
Query: 316 GLL 318
G+
Sbjct: 296 GMF 298
>gi|432328759|ref|YP_007246903.1| DNA polymerase III, gamma/tau subunit [Aciduliprofundum sp.
MAR08-339]
gi|432135468|gb|AGB04737.1| DNA polymerase III, gamma/tau subunit [Aciduliprofundum sp.
MAR08-339]
Length = 320
Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 132/310 (42%), Positives = 190/310 (61%), Gaps = 2/310 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WVEKYRP + ++VG + V RL + +MP+L+ AGP GTGKTT +ALA EL G N
Sbjct: 5 WVEKYRPKNLDEVVGQKEIVERLKSYVKAKSMPHLLFAGPAGTGKTTCAIALARELFGDN 64
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+R + ELNASD+RGI +VR KIK +A+ G K++ LDEAD++T AQ ALRRT
Sbjct: 65 WRSSFHELNASDERGIGIVRTKIKEYARTAAPNDVG-FKIIFLDEADALTPDAQAALRRT 123
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME+YS + RF L+CN SSKIIEPIQSRCA+ RF+ L E+I RL + + E +
Sbjct: 124 MEMYSRTCRFILSCNYSSKIIEPIQSRCAVFRFTPLKAEDIKKRLRYIAENEGKEITDDA 183
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
L+AI++ + GDMR+A+N LQ + + +++ V+K V+ +V+ L G F
Sbjct: 184 LDAIVYISSGDMRKAINILQMSAAISDTIDEGTVYKATGIAKREDVEEVVKKALGGDFIS 243
Query: 255 ACSGL-KQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L K L +LG S D+I + R+I + + + LK+E + G R+ +G +Q
Sbjct: 244 ARNKLNKLLVELGLSGEDVIKQIHRVIYDLPIDDRLKVELLDRTGEIEFRMVEGANERIQ 303
Query: 314 LCGLLAKLSI 323
L LLA ++
Sbjct: 304 LDALLAYFTL 313
>gi|323352310|gb|EGA84845.1| Rfc4p [Saccharomyces cerevisiae VL3]
Length = 205
Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 118/201 (58%), Positives = 153/201 (76%), Gaps = 5/201 (2%)
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MTAGAQQALRRTME+YSNSTRFA ACN S+KIIEP+QSRCAI+R+S+LSDE++L RL+ +
Sbjct: 1 MTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQI 60
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
++ E V Y +GLEAIIFTA+GDMRQA+NNLQ+T +G VN +NVFK+ D PHPL VK
Sbjct: 61 IKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKK 120
Query: 243 MVRNVLEGKFDDACSGLK-QLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFA 300
M +L +D+ L+ L+ GYS DI+TT FR+ KN ++ E ++LE +KE G
Sbjct: 121 M---LLASNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLT 177
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HMRI +GVG+YLQL +L K+
Sbjct: 178 HMRILEGVGTYLQLASMLXKI 198
>gi|300709601|ref|YP_003735415.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|448297629|ref|ZP_21487674.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|299123284|gb|ADJ13623.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|445578957|gb|ELY33355.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
Length = 329
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 128/313 (40%), Positives = 190/313 (60%), Gaps = 3/313 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WVEKYRP + +++G + RL ++PNL+ +G G GKTT A+A E+ G +
Sbjct: 18 WVEKYRPGTLGEVIGQEEITDRLERYVERDDLPNLLFSGSAGIGKTTCATAIAREVYGED 77
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+R+ +ELNASDDRGIDVVR +IK FA + + ++++ LDEADS+T+ AQ ALRRT
Sbjct: 78 WRDNFLELNASDDRGIDVVRGRIKEFA--RASFGGYSYRIIFLDEADSLTSDAQSALRRT 135
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +S++TRF L+CN SSKII+PIQSRCA+ RFS +SD + R+ + E + G
Sbjct: 136 MEQFSSNTRFILSCNYSSKIIDPIQSRCAVFRFSPISDAAVGERIREIAHIEGIEITDGG 195
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
+EA+++ ADGDMR+A+N+LQA V++E V+ + P ++ MV + LEG F
Sbjct: 196 VEALVYAADGDMRRAVNSLQAAAVMGETVDEEVVYTITATARPEEIEAMVTSALEGDFTT 255
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L L + G S DII L R + + +++ + + G RI +G +Q
Sbjct: 256 ARATLDDLLSNKGLSGGDIIDQLHRSVWDLGLSDREAVRTLDRIGETDYRITEGANERIQ 315
Query: 314 LCGLLAKLSIVRE 326
L LA L++ E
Sbjct: 316 LEAFLASLTLADE 328
>gi|254168320|ref|ZP_04875166.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|254169364|ref|ZP_04876193.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|289595866|ref|YP_003482562.1| Replication factor C [Aciduliprofundum boonei T469]
gi|197621683|gb|EDY34269.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|197622829|gb|EDY35398.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|289533653|gb|ADD08000.1| Replication factor C [Aciduliprofundum boonei T469]
Length = 317
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 132/310 (42%), Positives = 190/310 (61%), Gaps = 2/310 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WVEKYRP + ++VG + V RL + MP+L+ AGP GTGKTT +ALA EL G N
Sbjct: 5 WVEKYRPKSLDEVVGQDEIVDRLKSYVKAKTMPHLLFAGPAGTGKTTCAIALARELFGEN 64
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+R + ELNASD+RGI +VR KIK +A+ G K++ LDEAD++T AQ ALRRT
Sbjct: 65 WRASFHELNASDERGIGIVRTKIKEYARTAAPNDVG-FKIIFLDEADALTPDAQAALRRT 123
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME+YS + RF L+CN SSKIIEPIQSRCA+ RF+ L E+I RL + E +
Sbjct: 124 MEMYSRTCRFILSCNYSSKIIEPIQSRCAVFRFTPLKSEDIKKRLKYIADSEGKKITEDA 183
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
L AI++ + GDMR+A+N LQ + + +++ V+K V+++++ L G F +
Sbjct: 184 LNAIVYISGGDMRKAINILQMSAAISDTIDEGVVYKATGLAKREDVEDVLKKALAGDFIE 243
Query: 255 ACSGL-KQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L K L +LG S D+I + R+I + + + LK+E + + G RI +G +Q
Sbjct: 244 ARNKLNKLLVELGLSGEDVIKQIHRVIYDLPIDDRLKVELLDKTGEIEFRIVEGANERIQ 303
Query: 314 LCGLLAKLSI 323
L LLA ++
Sbjct: 304 LDALLAYFTL 313
>gi|448498600|ref|ZP_21610886.1| replication factor C small subunit [Halorubrum coriense DSM 10284]
gi|445698349|gb|ELZ50394.1| replication factor C small subunit [Halorubrum coriense DSM 10284]
Length = 327
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 129/302 (42%), Positives = 191/302 (63%), Gaps = 7/302 (2%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARL-GIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
W+EKYRP + D+ G + V RL IA+D ++P+L+ +GP G GKTT+ A+A E+ G
Sbjct: 18 WIEKYRPQTLDDVHGQEEIVERLQSYIAQD-DVPHLLFSGPAGIGKTTAATAIAREIYGE 76
Query: 74 -NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
N+R +ELNASD RGIDVVR++IK FA+ G ++V LDEADS+T AQ ALR
Sbjct: 77 DNWRGNFLELNASDQRGIDVVRDRIKGFARSSF---GGDFRIVFLDEADSLTDDAQSALR 133
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME +S++TRF L+CN SSKII+PIQSRCA+ RFS LSDE + + + E++
Sbjct: 134 RTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVSGMVREIAAAEEIEVTD 193
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
G++A+++ ADGDMR+A+N+LQA + V+++ V+ + P +++MV + L G F
Sbjct: 194 AGVDALVYAADGDMRRAINSLQAAATTGDVVDEKAVYAITATARPEEIESMVTDALSGDF 253
Query: 253 DDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A S L L + G + D+I L R + ++++E + M+ G A RI +G
Sbjct: 254 ARARSTLDTLLTETGMAGGDVIDQLHRSVWEFDLSEREAVRLMERIGEADYRIAEGANEQ 313
Query: 312 LQ 313
+Q
Sbjct: 314 VQ 315
>gi|402467377|gb|EJW02684.1| DNA polymerase III, subunit gamma and tau [Edhazardia aedis USNM
41457]
Length = 321
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 135/313 (43%), Positives = 182/313 (58%), Gaps = 16/313 (5%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN- 74
VEKYRP K+ D+ GN DAV L I + NMP+L+ GPPGTGKTT +A ELL N
Sbjct: 5 VEKYRPKKLEDVFGNTDAVETLRCILKAKNMPHLLFTGPPGTGKTTCAKIIAKELLCANI 64
Query: 75 --------YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG 126
Y + +ELNASDDRGIDV+R++IKMFA KKV K+++LDEADSMT
Sbjct: 65 TSEEMKNHYNQCCLELNASDDRGIDVIRDRIKMFATKKVDSQDAIKKIIILDEADSMTTA 124
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQQALRR ME TRF L CN SKI EPIQSRCA+++F +L + I + L + EE
Sbjct: 125 AQQALRRVMET-CVETRFILICNTFSKIFEPIQSRCAVLKFDKLDNCAIKTYLARIGNEE 183
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQAT-YSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
+ + LE II +DGDMRQ +N LQ+ Y ++++ + K+ QP P + +V
Sbjct: 184 NIQLSDDALEMIITLSDGDMRQGINILQSCIYFSDDIIDEKVILKITGQPSPKIIAEIVE 243
Query: 246 NVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
++ + + A S L++ + D+I FR K + E +K G H+RI
Sbjct: 244 SLAKNNVEKAISLFDGLWEQKFDAIDLIQGFFRYGKKID-----SYEILKAVGPVHLRIA 298
Query: 306 DGVGSYLQLCGLL 318
DG+ + LQ GL
Sbjct: 299 DGINTKLQFYGLF 311
>gi|409728331|ref|ZP_11271198.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
gi|448722058|ref|ZP_21704598.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
gi|445790282|gb|EMA40949.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
Length = 323
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 117/300 (39%), Positives = 185/300 (61%), Gaps = 3/300 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ + G+ D V RL ++P+L+ GP G GKTTS +A+A E+ G +
Sbjct: 13 WIEKYRPQRLSAVAGHADIVGRLESYVAQDDLPHLLFTGPAGVGKTTSAMAIAREVYGDD 72
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+RE +ELNASD+RGIDVVR++IK FA + + ++++ LDEAD++T+ AQ ALRRT
Sbjct: 73 WRENFLELNASDERGIDVVRDRIKNFA--RASFGGYDYRIIFLDEADALTSDAQSALRRT 130
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME ++N+TRF L+CN S++II+PIQSRCA+ RF L + + + + +EE + +G
Sbjct: 131 MEQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLDGDSVAEYVRRIAEEEGIEITEDG 190
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+++ ADGDMR+A+N LQA + V++E V+ + P ++ MV L+G F
Sbjct: 191 IDALVYAADGDMRKAINGLQAAATTGETVDEEAVYAITAAVRPEQIETMVTTALDGDFTA 250
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L L + G D+I L R ++++ + + ++ G RI G LQ
Sbjct: 251 ARAKLDDLLTEAGLGGGDVIDQLHRSAWSFDLDDRATVRLLERVGETDYRISQGANERLQ 310
>gi|300707639|ref|XP_002996019.1| hypothetical protein NCER_100948 [Nosema ceranae BRL01]
gi|239605277|gb|EEQ82348.1| hypothetical protein NCER_100948 [Nosema ceranae BRL01]
Length = 305
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 132/306 (43%), Positives = 183/306 (59%), Gaps = 9/306 (2%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY 75
V KYRP + ++GN+D + L I +D +MP+L+ GPPGTGKT+S A +LLG
Sbjct: 5 VNKYRPKDLESVIGNVDTLETLKCILKDHSMPHLLFTGPPGTGKTSSAKIFAFQLLGS-- 62
Query: 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTM 135
+E ++ELNASDDRGID VR IK FA KK+ P K+++LDE DSMT AQQA+RR M
Sbjct: 63 KEGILELNASDDRGIDTVRTLIKDFAMKKILNVP--FKIIILDECDSMTTAAQQAMRRIM 120
Query: 136 EIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGL 195
EIYS+ +F L CN SKI EPIQSRCA++RF ++ + I S L +VQ E + E L
Sbjct: 121 EIYSSECKFILICNDFSKIFEPIQSRCAVLRFDKIESKVIESCLQKIVQAEHMNITDEAL 180
Query: 196 EAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDA 255
II+ DGD+RQ+LN LQA +++ + K+ P P +K ++ + K D A
Sbjct: 181 SFIIYICDGDIRQSLNILQACLHIPNLIDENYIVKLIGIPSPKLIKEVLDLLTIKKVDKA 240
Query: 256 CSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLC 315
+L++ Y P D+IT+ FR+ KN E E +K+ G H++I G S L
Sbjct: 241 IERFNKLWEDKYDPEDLITSFFRMAKNDENYEAVKI-----IGLTHIKIVKGNHSKLLFY 295
Query: 316 GLLAKL 321
G+ L
Sbjct: 296 GMFYDL 301
>gi|448471999|ref|ZP_21601026.1| replication factor C small subunit [Halorubrum aidingense JCM
13560]
gi|445820426|gb|EMA70249.1| replication factor C small subunit [Halorubrum aidingense JCM
13560]
Length = 327
Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 126/301 (41%), Positives = 185/301 (61%), Gaps = 5/301 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP- 73
W+EKYRP + DI G V RL ++P+L+ +GP G GKTT+ A+A E+ G
Sbjct: 18 WIEKYRPQSLGDIHGQEAIVERLQSYIDQDDIPHLLFSGPAGVGKTTAATAIAREVYGED 77
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
N+R +ELNASD RGIDVVR++IK FA+ G ++V LDEADS+T AQ ALRR
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFARSSF---GGDFRIVFLDEADSLTDDAQSALRR 134
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
TME +S++TRF L+CN SSKII+PIQSRCA+ RFS LSD + + + E +
Sbjct: 135 TMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDAAVAGQTREIAAAEGIEVTDA 194
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
G++A+++ ADGDMR+A+N+LQA + V++E V+ + P +++MV + L G F
Sbjct: 195 GVDALVYAADGDMRRAINSLQAAATTGDVVDEEAVYAITATARPEEIESMVTDALAGDFA 254
Query: 254 DACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
A + L L + G + D+I L R + ++++E ++ M+ G A RI +G +
Sbjct: 255 KARATLDSLLTETGMAGGDVIDQLHRSVWEFDLSEREAVKLMERIGEADYRIAEGANEQV 314
Query: 313 Q 313
Q
Sbjct: 315 Q 315
>gi|73669094|ref|YP_305109.1| replication factor C small subunit [Methanosarcina barkeri str.
Fusaro]
gi|110287811|sp|Q46C63.1|RFCS_METBF RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|72396256|gb|AAZ70529.1| replication factor C small subunit [Methanosarcina barkeri str.
Fusaro]
Length = 334
Score = 243 bits (620), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 129/325 (39%), Positives = 199/325 (61%), Gaps = 21/325 (6%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ + G + + RL N+P+L+ +GPPG GKT S +++A E+ G +
Sbjct: 11 WIEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 70
Query: 75 -YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGAQQAL 131
+RE ELNASD+RGIDVVR KIK FA+ T P G + K++ LDEAD++T+ AQ AL
Sbjct: 71 LWRENFTELNASDERGIDVVRTKIKNFAK---TAPMGGAEFKIIFLDEADALTSDAQSAL 127
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTME +SN+ RF L+CN SS+IIEPIQSRCA+ RF RLSDE I RL + +++ +
Sbjct: 128 RRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRKRLEYIAKDQVLSIT 187
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGF----RFVNQENVFKVCDQPHPLHVKNMVRNV 247
+G EA+++ + GDMR+A+N+LQA + F + +++ +++ +P ++N++
Sbjct: 188 EDGYEALVYVSQGDMRKAVNSLQA--AAFVEPNKSISRGTIYRTTATANPEDIRNLIETA 245
Query: 248 LEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYE--------MAEHLKLEFMKEAG 298
L G F A L + LY+ G S DI+ ++R I + ++E +E + G
Sbjct: 246 LRGNFRVARKELNRLLYEEGLSGEDIVGQIYRAISEMDNRMILDLGLSEKRIVELVDIIG 305
Query: 299 FAHMRICDGVGSYLQLCGLLAKLSI 323
R+ +G +QL LLA ++
Sbjct: 306 EIDFRLTEGATEKIQLEALLAHFAL 330
>gi|448737973|ref|ZP_21720004.1| replication factor C small subunit [Halococcus thailandensis JCM
13552]
gi|445802557|gb|EMA52861.1| replication factor C small subunit [Halococcus thailandensis JCM
13552]
Length = 326
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 190/309 (61%), Gaps = 4/309 (1%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
M+ +S S +I W+EKYRP+ + ++ G D RL ++P+L+ +GP G GKT
Sbjct: 1 MSETSGSGGRGEI-WIEKYRPSALAEVAGQDDITERLRSYVAQDDLPHLLFSGPAGVGKT 59
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TS +A+A E+ G ++RE +ELNASD+RGIDVVR++IK FA + + ++V+ LDEA
Sbjct: 60 TSAMAIAREIYGDDWRENFLELNASDERGIDVVRDRIKNFA--RTSFGGYDYRVIFLDEA 117
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D++T+ AQ ALRRTME ++N+TRF L+CN S++II+PIQSRCA+ RF L + + +
Sbjct: 118 DALTSDAQSALRRTMEQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLPETAVAEYVE 177
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+ EE + +G++A+++ ADGDMR+A+N LQA + V++E V+ + P +
Sbjct: 178 RIAGEEGIEITDDGVDALVYAADGDMRKAINGLQAAATTGETVDEEAVYAITAAARPEQI 237
Query: 241 KNMVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGF 299
+ MV++ + G F A + L L D G D+I L R ++E+ + + ++ G
Sbjct: 238 ETMVQHAIGGDFTAARAKLDDLLTDWGLGGGDVIDQLHRSAWSFELDDQATVRLLERVGE 297
Query: 300 AHMRICDGV 308
RI G
Sbjct: 298 TDYRITQGA 306
>gi|448312591|ref|ZP_21502333.1| replication factor C small subunit [Natronolimnobius
innermongolicus JCM 12255]
gi|445601042|gb|ELY55036.1| replication factor C small subunit [Natronolimnobius
innermongolicus JCM 12255]
Length = 330
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 188/300 (62%), Gaps = 3/300 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ +I G+ + + RL ++P+++ AGP G GKT S A+A E+ G +
Sbjct: 19 WIEKYRPERLDEIKGHENIIPRLKNYVEQDDLPHIMFAGPAGVGKTASSQAIAREIYGDD 78
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+RE +ELNASD RGIDVVR++IK FA + + ++++ LDEAD++T+ AQ ALRRT
Sbjct: 79 WRENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYNYRIIFLDEADALTSDAQSALRRT 136
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +SN+TRF L+CN SS+II+PIQSRCA+ RF+ L+D+ I +++ + E + +G
Sbjct: 137 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDDAIEAQVREIADTEGIAVTDDG 196
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+++ ADGDMR+A+N LQA V++E VF + P V+ MV + + G F
Sbjct: 197 VDALVYAADGDMRKAINGLQAAAVMGETVDEETVFAITSTARPEEVEAMVDHAIAGDFTA 256
Query: 255 ACSGLKQ-LYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L+ L + G + D+I L R +++ E + ++ G RI +G LQ
Sbjct: 257 ARAALEDLLMERGLAGGDVIDQLHRSAWEFDIPEQATVRLLERLGEVDYRITEGANERLQ 316
>gi|15678269|ref|NP_275384.1| replication factor C small subunit [Methanothermobacter
thermautotrophicus str. Delta H]
gi|42559322|sp|O26343.1|RFCS_METTH RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=MthRFC small subunit
gi|2621290|gb|AAB84747.1| replication factor C, small subunit [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 321
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 128/313 (40%), Positives = 189/313 (60%), Gaps = 7/313 (2%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP K+ DIVG + RL + +MPNL+ GP G GKTT+ LALA E+LG
Sbjct: 7 PWVEKYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNLMFTGPAGVGKTTAALALAREILGE 66
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
+R+ +ELNASD RGID VR IK F + K P +++ LDE D+MT AQ ALRR
Sbjct: 67 YWRQNFLELNASDARGIDTVRTSIKNFCRLKPVGAP--FRIIFLDEVDNMTKDAQHALRR 124
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
ME+Y+ ++ F L+CN SSKII+PIQSRCAI RF L +I+ RL + ++E + Y
Sbjct: 125 EMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQIIKRLEYIAEKENLEYEAH 184
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
LE I++ A+GD+R+A+N LQ+ S + + +++ V + P V+ M++ +L+GKF
Sbjct: 185 ALETIVYFAEGDLRKAINLLQSAASLGEKITESSIYDVVSRARPKDVRKMIKTILDGKFM 244
Query: 254 DACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLK----LEFMKEAGFAHMRICDGV 308
+A L+++ L G S D++T +++ + M + + + G RI +G
Sbjct: 245 EARDMLREIMVLQGISGEDMVTQIYQELSRLAMEGEVDGDRYVGLIDAIGEYDFRIREGA 304
Query: 309 GSYLQLCGLLAKL 321
+QL LLA+
Sbjct: 305 NPRIQLEALLARF 317
>gi|325958394|ref|YP_004289860.1| replication factor C small subunit [Methanobacterium sp. AL-21]
gi|325329826|gb|ADZ08888.1| Replication factor C small subunit [Methanobacterium sp. AL-21]
Length = 347
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 131/327 (40%), Positives = 194/327 (59%), Gaps = 7/327 (2%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A+ + + + PWVEKYRP + ++VG + RL ++GNMPNL+ GP G GKTT
Sbjct: 18 ATQYENGDSMNAPWVEKYRPQTLDEVVGQEHTILRLKRYVKEGNMPNLMFTGPAGVGKTT 77
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
+ +ALA E+LG +R+ +ELNASD RGID VRN IK F + K P +++ LDE D
Sbjct: 78 TSIALAKEMLGEYWRQNFLELNASDARGIDTVRNDIKSFCRLKAVGSP--FRIIFLDEVD 135
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
+MT AQ ALRR ME+Y+ ++ F L+CN SSKII+PIQSRCAI RF + +I+ RL
Sbjct: 136 NMTKDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFVPVKGHQIIKRLEY 195
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ Q E + +E+I++ A+GDMR+A+N LQA+ S V +E+V +V + P VK
Sbjct: 196 IAQAEGLKIDIAAIESIVYFAEGDMRRAVNILQASSSAGEEVTEESVDEVVSKAKPKDVK 255
Query: 242 NMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNY----EMAEHLKLEFMKE 296
+V L+G F A L+ + + G S D++T +++ + + E + + ++
Sbjct: 256 KIVNKALDGDFIGARELLRDVMVVQGTSGEDMVTQIYQEVSKMALDGSLNEDIYINLVES 315
Query: 297 AGFAHMRICDGVGSYLQLCGLLAKLSI 323
G RI +G +QL LL K I
Sbjct: 316 IGETDYRIREGSNPRIQLEALLTKFLI 342
>gi|167045379|gb|ABZ10035.1| putative ATPase family associated with various cellular activities
(AAA) [uncultured marine microorganism HF4000_APKG10F13]
Length = 323
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 186/311 (59%), Gaps = 2/311 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WVEKYRP + ++VG RL R+ +MP+L+ AGPPGTGKTT LALA E+ G +
Sbjct: 5 WVEKYRPATLAEVVGQSVVTTRLASYVREKSMPHLLFAGPPGTGKTTCSLALAREMFGEH 64
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++ + ELNASD+RGIDVVR KIK FA + + G K++ LDEAD++T+ AQ ALRRT
Sbjct: 65 WQHNLHELNASDERGIDVVRGKIKEFA-RTAPIGGGGFKIIFLDEADALTSAAQAALRRT 123
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME YS + RF L+CN SSKIIEPIQSRCA+ RF L E++ L + EK+ +
Sbjct: 124 MEKYSRTCRFVLSCNYSSKIIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDA 183
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
EA+ + A GD+R+A+N+LQ + + + E V++ P V+ ++ L+G F
Sbjct: 184 YEALAYLAQGDLRRAINSLQMAAAADKDITSEVVYQAVSAARPGEVREVLELALQGNFAG 243
Query: 255 ACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A L L G + DI+ + R ++ E+ + K++ +++ R+ +G + +Q
Sbjct: 244 ARERLDALIITYGLAGEDILRQMHRTVRELEIPDEAKVQLIEKLAEVDFRLSEGATARIQ 303
Query: 314 LCGLLAKLSIV 324
+ +A +V
Sbjct: 304 IEAAIAHFIVV 314
>gi|58262374|ref|XP_568597.1| DNA replication factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|57230771|gb|AAW47080.1| DNA replication factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 373
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 130/334 (38%), Positives = 197/334 (58%), Gaps = 6/334 (1%)
Query: 1 MASSSSSSSAYD----IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPG 56
+AS ++ A D +PWVEKYRP + D+V + D + + G +P+L+L GPPG
Sbjct: 38 IASPAADGKAVDDKEGLPWVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPG 97
Query: 57 TGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVV 116
TGKT+++LALA L GP YR+ ++ELNASDDRGIDVVR +IK FA KV G K+V+
Sbjct: 98 TGKTSTVLALARRLYGPAYRKHILELNASDDRGIDVVREQIKNFAMTKVLFSKG-FKLVI 156
Query: 117 LDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEIL 176
LDEAD MT AQ ALRR +E ++ + RF + CN +KI IQSRC RFS L ++EI
Sbjct: 157 LDEADMMTQAAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQ 216
Query: 177 SRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPH 236
++ VVQ+E V +G +AI+ + GDMR+ALN LQA ++ + V++ V+ PH
Sbjct: 217 VKVDEVVQKEGVNLTDDGRDAILKLSRGDMRRALNVLQACHAAYDIVDETAVYNCTGNPH 276
Query: 237 PLHVKNMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMK 295
P ++ +V++++ +F A S + L + G + D+I + + E+ + ++ +
Sbjct: 277 PRDIERVVQSMMADEFGTAYSLITSLKIEKGLALQDLIAGAYEFLDTVELPKQSRIYLLD 336
Query: 296 EAGFAHMRICDGVGSYLQLCGLLAKLSIVRETAK 329
G R+ G +QL LL + E ++
Sbjct: 337 HLGSTEHRLSLGGSEKMQLTALLGAFKVAVELSQ 370
>gi|147918695|ref|YP_687582.1| replication factor C small subunit [Methanocella arvoryzae MRE50]
gi|121687726|sp|Q0W037.1|RFCS_UNCMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|110622978|emb|CAJ38256.1| replication factor C (clamp loader), small subunit [Methanocella
arvoryzae MRE50]
Length = 322
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 124/315 (39%), Positives = 192/315 (60%), Gaps = 2/315 (0%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
A D W EKYRP ++ D++G+ RL + GN+P+L+ +GPPG GKT +ALA E
Sbjct: 2 AEDEIWTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARE 61
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
L G + +ELNASD+RGIDVVRN IK FA + L K K++ LDEAD++T+ AQ
Sbjct: 62 LYGETWHSNFIELNASDERGIDVVRNNIKNFA-RTAPLGEAKFKIIFLDEADALTSDAQS 120
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRRTME Y+ + RF ++CN SSKIIEPIQSRCA+ RF L+ +I + + + + E +
Sbjct: 121 ALRRTMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITTGITRIAKNEGLK 180
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
+G++A+I+ A GDMR+A+N LQ+ + + + + +++ P +++M++ L
Sbjct: 181 IEKDGMDALIYVARGDMRRAINALQSAATIAKDITADVIYQTTSTAKPKEIEDMLKLALN 240
Query: 250 GKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGV 308
G+F D+ + L +L G S TDII ++R + + E + + + G A R+ +G
Sbjct: 241 GQFMDSRNKLDELLITYGLSGTDIIDQIYRSMFELGLDEDVLVALVDRIGEADFRLTEGA 300
Query: 309 GSYLQLCGLLAKLSI 323
+Q+ LLA +
Sbjct: 301 SERIQIEALLAHFKM 315
>gi|448726685|ref|ZP_21709077.1| replication factor C small subunit [Halococcus morrhuae DSM 1307]
gi|445793731|gb|EMA44302.1| replication factor C small subunit [Halococcus morrhuae DSM 1307]
Length = 326
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 190/309 (61%), Gaps = 4/309 (1%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
M+ +S S +I W+EKYRP+ + ++ G D RL ++P+L+ +GP G GKT
Sbjct: 1 MSETSGSGGRGEI-WIEKYRPSALAEVAGQDDITERLRSYVAQDDLPHLLFSGPAGVGKT 59
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TS +A+A E+ G ++R+ +ELNASD+RGIDVVR++IK FA + + ++V+ LDEA
Sbjct: 60 TSAMAIAREIYGDDWRDNFLELNASDERGIDVVRDRIKNFA--RTSFGGYDYRVIFLDEA 117
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D++T+ AQ ALRRTME ++N+TRF L+CN S++II+PIQSRCA+ RF L + + +
Sbjct: 118 DALTSDAQSALRRTMEQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLPETAVAEYVE 177
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+ EE + +G++A+++ ADGDMR+A+N LQA + V++E V+ + P +
Sbjct: 178 QIAGEEGIEITDDGVDALVYAADGDMRKAINGLQAAATTGETVDEEAVYAITAAARPEEI 237
Query: 241 KNMVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGF 299
+ MV++ + G F A + L L D G D+I L R ++E+ + + ++ G
Sbjct: 238 ETMVQHAIGGDFTAARAKLDDLLTDWGLGGGDVIDQLHRSAWSFELDDQATVRLLERVGE 297
Query: 300 AHMRICDGV 308
RI G
Sbjct: 298 TDYRITQGA 306
>gi|353238813|emb|CCA70747.1| probable RFC3-DNA replication factor C, 40 kDa subunit
[Piriformospora indica DSM 11827]
Length = 346
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 123/318 (38%), Positives = 187/318 (58%), Gaps = 2/318 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
D+PWVEKYRP + D+V + D + + +P+L+ GPPGTGKT++I+A+A L
Sbjct: 27 DLPWVEKYRPITLDDVVSHKDITTTIEQFIQKNRLPHLLFYGPPGTGKTSTIIAVARRLY 86
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G NY++ ++ELNASDDRGIDVVR++IK FA+ + G K+++LDEAD MT AQ AL
Sbjct: 87 GANYKKQILELNASDDRGIDVVRDQIKGFAETRGVFAKG-FKLIILDEADMMTQAAQAAL 145
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR +E Y+ + RF + CN +KI IQSRC RFS L E+ RL V++ E V
Sbjct: 146 RRVIEQYTRNVRFCIICNYVNKITPAIQSRCTRFRFSPLPVSEVEKRLQTVIENEGVKVS 205
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
PEG EA++ + GDMR+ALN LQA ++ + ++E ++ PHP ++N+V +++ +
Sbjct: 206 PEGKEALLKLSRGDMRRALNVLQACHAAYDITDEEAIYTCTGNPHPKDIENVVNSMMSQE 265
Query: 252 FDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
F + L + G + D+I+ F ++ E+ H ++ + + R+ G
Sbjct: 266 FGTCYHMINSLKTERGLALQDLISGAFDYVQELELPPHSRVYLLDQLATIEHRLSTGGSE 325
Query: 311 YLQLCGLLAKLSIVRETA 328
LQL L+A E A
Sbjct: 326 KLQLTALIAAFKNTVELA 343
>gi|352682669|ref|YP_004893193.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
gi|350275468|emb|CCC82115.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
Length = 321
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 131/316 (41%), Positives = 188/316 (59%), Gaps = 12/316 (3%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
D+ W EKYRP +IV + ARL + GNMP+L+ GPPGTGKTT+ L LA EL
Sbjct: 3 DLFWFEKYRPKSFAEIVDLEEIKARLAEFIKAGNMPHLLFYGPPGTGKTTTALVLARELY 62
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGAQQ 129
G +RE +ELNASD+RGI+V+R ++K FA+ T P G K+VVLDEAD+MT+ AQQ
Sbjct: 63 GERWRENTLELNASDERGINVIRERVKEFAR---TAPAGGAPFKLVVLDEADNMTSDAQQ 119
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRR ME+Y+ +TRF L N S IIEPIQSRCA+ RFS L + +++RL + ++E +
Sbjct: 120 ALRRIMEMYAATTRFVLLANYVSGIIEPIQSRCAVFRFSPLPKDAVVARLRYIAEQEGLK 179
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
+ LEAI GDMR+A+ LQ S R +++E + + P ++ ++ +
Sbjct: 180 VTQDALEAIFDFTQGDMRRAITALQIASSTTREIDEEAIARALGYVSPSILRRLIAEAIS 239
Query: 250 GKFDDACSGLKQLY----DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
G F A S Q+Y D G ++I + R + ++ EHLK + E AH +
Sbjct: 240 GDFSKAIS---QIYGIVADGGVGELELIRQIHREVLRLDVPEHLKPDLAYEVERAHYAVL 296
Query: 306 DGVGSYLQLCGLLAKL 321
G +Q+ G+LA++
Sbjct: 297 RGANGLVQIYGILARV 312
>gi|432330756|ref|YP_007248899.1| DNA polymerase III, gamma/tau subunit [Methanoregula formicicum
SMSP]
gi|432137465|gb|AGB02392.1| DNA polymerase III, gamma/tau subunit [Methanoregula formicicum
SMSP]
Length = 322
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 185/310 (59%), Gaps = 6/310 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP K+ DIVG + V RL R GN+P+L+ G G GKTT+ + LA E +
Sbjct: 8 WIEKYRPQKLADIVGQDEIVERLSSYVRSGNLPHLLFTGSAGVGKTTAAVTLAREFFRDS 67
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQALR 132
++ ELNASD+RGIDVVRN+IK FA+ T P G+ K++ LDEAD++T AQ ALR
Sbjct: 68 WQMNFRELNASDERGIDVVRNQIKQFAR---TTPLGEATFKILFLDEADALTTDAQAALR 124
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME Y+ + RF L+CN SSKII+PIQSRCAI RF L E + + + E +
Sbjct: 125 RTMESYAQTCRFILSCNYSSKIIDPIQSRCAIYRFKPLGPEAVREEVRRIASREGLTITD 184
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
++AI++ A GDMR+A+N LQ ++++ V+ + P + ++ L G F
Sbjct: 185 GAMDAIVYIAQGDMRKAINALQGAAIINPAIDEKRVYSITSTARPEEIDELLSLSLTGDF 244
Query: 253 DDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
D A S L Q L++ G +P ++I ++R + EM LK+ + G + R+ +G S
Sbjct: 245 DGAESLLAQLLHERGIAPNELINQMYRALLKREMPRELKVRLIDHLGESDFRLSEGANSD 304
Query: 312 LQLCGLLAKL 321
+Q+ L+A+
Sbjct: 305 IQMEALVARF 314
>gi|296241869|ref|YP_003649356.1| replication factor C small subunit [Thermosphaera aggregans DSM
11486]
gi|296094453|gb|ADG90404.1| replication factor C small subunit [Thermosphaera aggregans DSM
11486]
Length = 325
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 131/310 (42%), Positives = 191/310 (61%), Gaps = 9/310 (2%)
Query: 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH 68
S ++ W EKYRP + ++V + VARL D NMP+++ AGPPGTGKTT LAH
Sbjct: 2 SEIELLWTEKYRPRTLDEVVNQSEIVARLKKFVSDKNMPHMLFAGPPGTGKTTMAHCLAH 61
Query: 69 ELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKV--TLPPGKHKVVVLDEADSMTAG 126
+L G NYR+ ++ELNASD+RGI+V+R+K+K FA+ +V +P K+++LDEAD+MTA
Sbjct: 62 DLYGDNYRQYILELNASDERGIEVIRSKVKEFARTRVVGNVP---FKIILLDEADNMTAD 118
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQQALRR ME+Y+ STRF L N SKIIEPIQSR A+ RF+ L E+++ RL + E
Sbjct: 119 AQQALRRLMELYTASTRFILIANYPSKIIEPIQSRTAVFRFTPLKREDVVERLKYICSNE 178
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
KV + L I ++GDMR+A+N LQA+ + ENV+KV HP V+ M++
Sbjct: 179 KVKCHEDALNTIFELSEGDMRRAINILQAS-AALGEATVENVYKVVGLAHPREVREMIQL 237
Query: 247 VLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRII--KNYEMAEHLKLEFMKEAGFAHMR 303
L G F +A + L+ L G S D++ + + I + ++ + +K+ G R
Sbjct: 238 ALSGNFAEARNKLRTLMITYGLSGVDVVKQIHKEIFSSDIKIPDEIKIVIADLVGEIQFR 297
Query: 304 ICDGVGSYLQ 313
+ +G +Q
Sbjct: 298 LVEGADDEIQ 307
>gi|355571949|ref|ZP_09043157.1| Replication factor C small subunit [Methanolinea tarda NOBI-1]
gi|354825045|gb|EHF09280.1| Replication factor C small subunit [Methanolinea tarda NOBI-1]
Length = 321
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 125/313 (39%), Positives = 189/313 (60%), Gaps = 6/313 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ DIVG V RL R GN+P+L+ G G GKTT+ +ALA E +
Sbjct: 8 WIEKYRPVRLADIVGQDQIVERLSSYVRTGNLPHLLFTGSAGVGKTTAAVALAREFFKDS 67
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQALR 132
+ ELNASD+RGIDVVRN+IK FA+ T P G K++ LDEAD++T AQ ALR
Sbjct: 68 WHMNFRELNASDERGIDVVRNQIKQFAR---TSPLGGAGFKILFLDEADALTPDAQAALR 124
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME Y+++ RF L+CN SS+II+PIQSRCAI RF LS E I ++ + + EK+
Sbjct: 125 RTMESYASTCRFILSCNYSSRIIDPIQSRCAIYRFRSLSPEAITKEILRIAENEKLTITG 184
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
E ++AII A GDMR+A+N LQ + + V+ + P +++++ L G F
Sbjct: 185 EAIDAIIEIAQGDMRKAINALQGAAILSPEITGDMVYAITATARPDEIEDLLSTSLSGDF 244
Query: 253 DDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
+ A + L +L D G +P ++I +R + +M E +++ + + G R+ +G S
Sbjct: 245 EGATAILHRLLNDRGIAPNELINQCYRALTRRDMEEDMRVALIDQLGTTDFRLSEGASSD 304
Query: 312 LQLCGLLAKLSIV 324
+Q+ ++A+ ++
Sbjct: 305 IQMEAMIARFVLL 317
>gi|320100775|ref|YP_004176367.1| replication factor C small subunit [Desulfurococcus mucosus DSM
2162]
gi|319753127|gb|ADV64885.1| replication factor C small subunit [Desulfurococcus mucosus DSM
2162]
Length = 347
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 136/324 (41%), Positives = 198/324 (61%), Gaps = 9/324 (2%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
S S ++ W EKYRP + ++V + V RL + ++P+++ AGPPGTGKTT
Sbjct: 21 SGLSEAELLWAEKYRPRTLDEVVNQKEIVVRLKKFVEEKSIPHMLFAGPPGTGKTTMAHC 80
Query: 66 LAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVT--LPPGKHKVVVLDEADSM 123
LAH+L G +Y++ ++ELNASD+R I+V+R K+K FA+ +V +P K+V+LDEAD+M
Sbjct: 81 LAHDLYGDDYKKYMLELNASDERKIEVIRGKVKEFARSRVVGEVP---FKIVLLDEADNM 137
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
TA AQQALRR ME+YS +TRF L N SKIIEPIQSR AI RFS L E+++ RL +
Sbjct: 138 TADAQQALRRLMELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLRKEDVVERLRYIC 197
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
EKV LE I ++GDMR+A+N LQ T + V +E V+KV HP V+ M
Sbjct: 198 NAEKVKCDERALETIYELSEGDMRRAINILQTT-AALGEVVEEAVYKVIGLAHPREVREM 256
Query: 244 VRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYE--MAEHLKLEFMKEAGFA 300
+ L G F +A + L+ L + G S DII + + I + E + + +++ AG
Sbjct: 257 LNEALSGNFTEARNKLRTLMIEYGLSGVDIIRQIHKEIFSQEVKIPDEMRVLIADLAGEI 316
Query: 301 HMRICDGVGSYLQLCGLLAKLSIV 324
R+ +G +QL LA+L+++
Sbjct: 317 QFRLVEGADDEIQLNAFLARLALI 340
>gi|134118754|ref|XP_771880.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254484|gb|EAL17233.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 373
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 129/334 (38%), Positives = 197/334 (58%), Gaps = 6/334 (1%)
Query: 1 MASSSSSSSAYD----IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPG 56
+AS ++ A D +PWVEKYRP + D+V + D + + G +P+L+L GPPG
Sbjct: 38 IASPAADGKAVDDKEGLPWVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPG 97
Query: 57 TGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVV 116
TGKT+++LALA L GP YR+ ++ELNASDDRGIDVVR +IK FA KV G K+V+
Sbjct: 98 TGKTSTVLALARRLYGPAYRKHILELNASDDRGIDVVREQIKNFAMTKVLFSKG-FKLVI 156
Query: 117 LDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEIL 176
LDEAD MT AQ ALRR +E ++ + RF + CN +KI IQSRC RFS L ++EI
Sbjct: 157 LDEADMMTQAAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQ 216
Query: 177 SRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPH 236
++ VVQ+E V +G +A++ + GDMR+ALN LQA ++ + V++ V+ PH
Sbjct: 217 VKVDEVVQKEGVNLTDDGRDALLKLSRGDMRRALNVLQACHAAYDIVDETAVYNCTGNPH 276
Query: 237 PLHVKNMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMK 295
P ++ +V++++ +F A S + L + G + D+I + + E+ + ++ +
Sbjct: 277 PRDIERVVQSMMADEFGTAYSLITSLKIEKGLALQDLIAGAYEFLDTVELPKQSRIYLLD 336
Query: 296 EAGFAHMRICDGVGSYLQLCGLLAKLSIVRETAK 329
G R+ G +QL LL + E ++
Sbjct: 337 HLGSTEHRLSLGGSEKMQLTALLGAFKVAVELSQ 370
>gi|383319632|ref|YP_005380473.1| replication factor C small subunit [Methanocella conradii HZ254]
gi|379321002|gb|AFC99954.1| replication factor C small subunit [Methanocella conradii HZ254]
Length = 322
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 127/319 (39%), Positives = 192/319 (60%), Gaps = 2/319 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
D W EKYRP + D++G V RL + GN+P+L+ +GPPG GKT +ALA ++
Sbjct: 4 DDVWTEKYRPKTLDDVIGQEQIVRRLKSYVKSGNLPHLLFSGPPGVGKTACAVALAKDMF 63
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G ++ +ELNASD+RGI+VVRN IK FA+ L + KV+ LDEAD++TA AQ AL
Sbjct: 64 GDAWQNNFIELNASDERGIEVVRNNIKNFARTS-PLGEARFKVIFLDEADALTADAQSAL 122
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTME Y+ + RF ++CN SSKIIEPIQSRCAI RF L +++ + + + + E +
Sbjct: 123 RRTMERYTATCRFIISCNYSSKIIEPIQSRCAIYRFGLLGPKDVETMVRRIEKGEHIKVS 182
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
P+GLEA+I+ A GDMR+A+N LQ+ + + V + VF+ P +++M++ L G+
Sbjct: 183 PDGLEALIYVARGDMRRAINALQSASTVTKHVTADVVFETMSIARPKEIEDMLKLALNGQ 242
Query: 252 FDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
F DA + L L G S D++ ++ + + E + ++ + G A R+ +G
Sbjct: 243 FMDARNKLDDLLIKYGLSGNDVVDQIYSAMFALGLDEGVLVDLVDRIGEADFRLTEGANE 302
Query: 311 YLQLCGLLAKLSIVRETAK 329
+Q+ LLA + E K
Sbjct: 303 RIQVEALLAHFKMHGEAMK 321
>gi|405123808|gb|AFR98571.1| DNA replication factor [Cryptococcus neoformans var. grubii H99]
Length = 373
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 129/334 (38%), Positives = 198/334 (59%), Gaps = 6/334 (1%)
Query: 1 MASSSSSSSAYD----IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPG 56
+AS +++ A D +PWVEKYRP + D+V + D + + G +P+L+L GPPG
Sbjct: 38 IASPAAAGKAVDDKEGLPWVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPG 97
Query: 57 TGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVV 116
TGKT+++LALA L GP YR+ ++ELNASDDRGIDVVR +IK FA KV G K+V+
Sbjct: 98 TGKTSTVLALARRLYGPAYRKHILELNASDDRGIDVVREQIKNFAMTKVLFSKG-FKLVI 156
Query: 117 LDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEIL 176
LDEAD MT AQ ALRR +E ++ + RF + CN +KI IQSRC RFS L ++EI
Sbjct: 157 LDEADMMTQAAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQ 216
Query: 177 SRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPH 236
++ VVQ+E V +G +A++ + GDMR+ALN LQA ++ + V++ V+ PH
Sbjct: 217 VKVDEVVQKEGVNLTDDGRDALLKLSRGDMRRALNVLQACHAAYDIVDETAVYNCTGNPH 276
Query: 237 PLHVKNMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMK 295
P ++ +V++++ +F A S + L + G + D+I + + E+ + ++ +
Sbjct: 277 PRDIERVVQSMMVDEFGTAYSLITTLKIEKGLALQDLIAGAYEFLDTVELPKQSRIYLLD 336
Query: 296 EAGFAHMRICDGVGSYLQLCGLLAKLSIVRETAK 329
G R+ G +QL LL + E ++
Sbjct: 337 HLGSTEHRLSLGGSEKMQLTALLGAFKVAVELSQ 370
>gi|397780149|ref|YP_006544622.1| Replication factor C small subunit [Methanoculleus bourgensis MS2]
gi|396938651|emb|CCJ35906.1| Replication factor C small subunit Short=RFC small subunit
[Methanoculleus bourgensis MS2]
Length = 324
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 125/313 (39%), Positives = 187/313 (59%), Gaps = 2/313 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ ++VG D V RL R GN+P+L+ G G GKTT+ +ALA EL G +
Sbjct: 10 WIEKYRPRRLDEMVGQQDIVVRLQSYVRTGNLPHLLFTGSAGIGKTTAAVALARELFGDS 69
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++ E+NASD+RGIDVVRN+IK FA + L KV+ LDEAD++T AQ ALRRT
Sbjct: 70 WQMNFREMNASDERGIDVVRNQIKEFA-RTSPLAGATFKVLFLDEADALTTDAQAALRRT 128
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME Y+ + RF L+CN SSKII+PIQSRCAI RF L E ++ + + E +
Sbjct: 129 METYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEEITRIAAIEGLTVTEGA 188
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
L+AI++ A GDMR+A+N LQ +++E ++++ P + ++ +EG+FD+
Sbjct: 189 LDAIVYVASGDMRKAINALQGAAILRPEIDEEMIYEITATARPDEIDELLDLSMEGRFDE 248
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A L +L G +P ++I +R + ++ LK+ + G R+ +G S +Q
Sbjct: 249 AEQALSELIRGRGIAPNELINQCYRSLVRRDLPRPLKVRLIDALGETDFRLSEGASSDIQ 308
Query: 314 LCGLLAKLSIVRE 326
+ LLAK + E
Sbjct: 309 MEALLAKFVLAAE 321
>gi|307353132|ref|YP_003894183.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
gi|307156365|gb|ADN35745.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
Length = 324
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 188/310 (60%), Gaps = 7/310 (2%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W EKYRP + D+VG + VARL + G++P+L+ GP G GKTTS +ALA E G N
Sbjct: 8 WTEKYRPKTLDDVVGQKEIVARLKSYVKTGSLPHLLFTGPAGIGKTTSAVALAREFFGEN 67
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGAQQALR 132
++ ELNASD+RGIDVVRN+IK FA+ T P G + K++ LDEAD++T AQ ALR
Sbjct: 68 WQVNFRELNASDERGIDVVRNQIKQFAR---TAPMGGAEFKILFLDEADALTNDAQAALR 124
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME Y+ + RF L+CN SSKII+PIQSRCA+ RF L E + L + + E +
Sbjct: 125 RTMENYAYTCRFILSCNYSSKIIDPIQSRCALYRFRPLDREAVTEELNRIAKTEGLSITE 184
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+ + AII+ A GDMR+A+N LQ + +E ++++ P ++ ++ +++G F
Sbjct: 185 DAMSAIIYVAQGDMRKAINALQGGAIISPEIKEEMIYEITSTARPDEIRELLSIIMDGNF 244
Query: 253 DDACSGLKQLYD-LGYSPTDIITTLFR-IIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
+ A L L G +P +++ +R +I N E+ +K+E + G A RI +G
Sbjct: 245 NAAEHKLNGLITGRGIAPLELLNQFYRTLIDNQEIDRKMKVEMISHLGDADFRISEGANP 304
Query: 311 YLQLCGLLAK 320
+Q+ LLAK
Sbjct: 305 NIQMEALLAK 314
>gi|288931716|ref|YP_003435776.1| Replication factor C [Ferroglobus placidus DSM 10642]
gi|288893964|gb|ADC65501.1| Replication factor C [Ferroglobus placidus DSM 10642]
Length = 321
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/315 (40%), Positives = 192/315 (60%), Gaps = 6/315 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WVEKYRP + ++VG + + RL + N+P+L+ AGPPGTGKT + +ALA +L G
Sbjct: 6 WVEKYRPKTLDEVVGQDEIIQRLKSYVKQKNIPHLLFAGPPGTGKTATAIALARDLFGEV 65
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGAQQALR 132
+RE +E+NASD+RGIDVVR+KIK FA+ T P G K++ LDEAD++TA AQ ALR
Sbjct: 66 WRENFIEMNASDERGIDVVRHKIKEFAR---TAPIGGAPFKIIFLDEADALTADAQAALR 122
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME+YS RF L+CN S+IIEPIQSRCA+ +F + E + RL + + E +
Sbjct: 123 RTMEMYSKVCRFILSCNYVSRIIEPIQSRCAVFKFKPVPKEAMKKRLKEIAENEGLEIDD 182
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
E LE +I+ + GD R+A+N LQ + + + E ++++ P ++ ++ L+G +
Sbjct: 183 EALEVLIYISGGDFRKAINALQGAAALDKRITPEILYQITATARPEELRKIIDTALKGNY 242
Query: 253 DDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A L+ L + G S D+++ LFR I + E LK+ + + G R+ +G
Sbjct: 243 LQAKDMLENLMAEYGMSGEDVVSQLFREIMYSNLDEKLKVVLIDKLGEIDFRLTEGASEL 302
Query: 312 LQLCGLLAKLSIVRE 326
+QL LA LS +++
Sbjct: 303 IQLNAYLAFLSTIQK 317
>gi|154151216|ref|YP_001404834.1| replication factor C small subunit [Methanoregula boonei 6A8]
gi|166225154|sp|A7I8Y0.1|RFCS_METB6 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|153999768|gb|ABS56191.1| Replication factor C [Methanoregula boonei 6A8]
Length = 322
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 182/310 (58%), Gaps = 6/310 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP K+ DIVG D V RL + GN+P+L+ G G GKTT+ + LA E G +
Sbjct: 8 WIEKYRPAKLADIVGQDDIVERLSSYVKSGNLPHLLFTGSAGVGKTTAAVTLAREFFGDS 67
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQALR 132
++ ELNASD+RGIDVVRN+IK FA+ T P G K++ LDEAD++T AQ ALR
Sbjct: 68 WQMNFRELNASDERGIDVVRNQIKEFAR---TRPAGDAAFKILFLDEADALTTDAQAALR 124
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME Y+ + RF L+CN SSKII+PIQSRCAI RF L + + + + E + P
Sbjct: 125 RTMESYAKTCRFILSCNYSSKIIDPIQSRCAIYRFRPLGPQAVKEEITRIAAREHLDVTP 184
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
E ++A+++ A GDMR+A+N LQ + V+ + P + ++ L G F
Sbjct: 185 EAMDAMVYIAQGDMRKAINALQGAAILSATIEAPMVYAITSNARPEEIGELLTLSLSGDF 244
Query: 253 DDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
D A + L +L + G +P ++I +R + +M LK+E + G R+ +G S
Sbjct: 245 DGAEALLTRLLRERGIAPNELINQCYRALTKRDMDRVLKVELIDALGETDFRLSEGASSD 304
Query: 312 LQLCGLLAKL 321
+Q+ L+A+
Sbjct: 305 IQMEALIARF 314
>gi|401828593|ref|XP_003888010.1| replication factor C small subunit [Encephalitozoon hellem ATCC
50504]
gi|392999018|gb|AFM99029.1| replication factor C small subunit [Encephalitozoon hellem ATCC
50504]
Length = 309
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/303 (42%), Positives = 189/303 (62%), Gaps = 9/303 (2%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY 75
V KYRP ++ DIVGN V + +I +MP+L+L+GPPGTGKTT L +LL P+
Sbjct: 5 VNKYRPNEIQDIVGNHTTVELVSLIIESRDMPHLLLSGPPGTGKTTCARILTRKLL-PS- 62
Query: 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTM 135
RE ++ELNASD+RGID VR IK FAQ+KV + K+++LDEADSMT+ AQQA+RR M
Sbjct: 63 REGLLELNASDERGIDTVRTTIKNFAQRKV--KGCEFKIIILDEADSMTSAAQQAMRRVM 120
Query: 136 EIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGL 195
E++S+ RF L CN +KI EPIQSRCAI+RF R+ IL +L + E + E L
Sbjct: 121 EVHSSECRFILICNTLTKIFEPIQSRCAILRFERIEHSTILGKLKEICGNEGIKISCEAL 180
Query: 196 EAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDA 255
+ ++ +DGDMRQ+LN LQA + ++++ + K+ P P ++ ++ +++ + ++A
Sbjct: 181 DLVVELSDGDMRQSLNILQACINSSETIDRDRIIKIIGLPSPKRIEKVLERLVKNEVEEA 240
Query: 256 CSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLC 315
++D + P D+I + FR KN E E +K G ++RI +GV S LQ
Sbjct: 241 LEMFDTIWDEKFDPLDLINSFFRAAKNME-----NYELLKVIGLTNLRISEGVNSRLQFY 295
Query: 316 GLL 318
G+
Sbjct: 296 GMF 298
>gi|359415519|ref|ZP_09207966.1| replication factor C small subunit [Candidatus Haloredivivus sp.
G17]
gi|358034122|gb|EHK02580.1| replication factor C small subunit [Candidatus Haloredivivus sp.
G17]
Length = 315
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 192/309 (62%), Gaps = 3/309 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W EK+RP + ++VG + RL + ++P+++ +GPPGTGKTT +ALA +L G
Sbjct: 5 WTEKHRPNTLSEVVGQNEITERLEAFVEEESIPHMLFSGPPGTGKTTCAVALAKDLYGDE 64
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+++ ME NAS++RGIDVVR KIK FA+ K ++K++ LDEADS+T+ AQQALRRT
Sbjct: 65 WKQNFMETNASEERGIDVVREKIKDFARTKAI--NAEYKIIFLDEADSLTSDAQQALRRT 122
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +S++ RF ++CN SSKII+PIQSRCA+ RF+RL + ++ S + + + E +
Sbjct: 123 MEQFSDNCRFIMSCNYSSKIIDPIQSRCAVFRFNRLEEGDVKSYIQRLGESENFSISEDA 182
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
+EA++ +DGD+R+ N LQ + +E+V+ V P + ++ + +F D
Sbjct: 183 VEAVMRVSDGDLRRVTNVLQTAAISTDEIEEEDVYSVSASLKPKEITEILEKTISNQFID 242
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A L L + G D+++++ R + N ++++ KLE ++ G RI +G + +Q
Sbjct: 243 ARDQLSDLMIERGLDGQDVVSSIHREVYNLDISDQQKLELIEALGEFEFRITEGASADVQ 302
Query: 314 LCGLLAKLS 322
+ LLAK++
Sbjct: 303 IEALLAKIA 311
>gi|410720678|ref|ZP_11360031.1| DNA polymerase III, gamma/tau subunit [Methanobacterium sp.
Maddingley MBC34]
gi|410600389|gb|EKQ54917.1| DNA polymerase III, gamma/tau subunit [Methanobacterium sp.
Maddingley MBC34]
Length = 321
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/313 (40%), Positives = 189/313 (60%), Gaps = 7/313 (2%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + ++VG + RL + NMPNL+ GP G GKTT+ +ALA +LG
Sbjct: 4 PWVEKYRPQTLDEVVGQDHIIQRLKQYINEANMPNLMFTGPAGVGKTTTAIALAKAMLGE 63
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
+++ +ELNASD RGI+ VR IK F + K P +++ LDE D+MT AQ ALRR
Sbjct: 64 YWKQNFLELNASDARGIETVRKDIKSFCRLKAMGAP--FRIIFLDEVDNMTKDAQHALRR 121
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
ME+Y+ ++ F L+CN SSKII+PIQSRCAI RF+ + +++ RL V+ + E V Y P
Sbjct: 122 EMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFAPIKGHQVIKRLEVIAKAENVNYAPG 181
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
LE+I++ A+GDMR+A+N LQ+T S VN+E V +V + P V+ +V L+G F
Sbjct: 182 TLESIVYFAEGDMRRAVNILQSTASMGEEVNEETVHEVVSKAKPKDVRRIVNLALDGDFM 241
Query: 254 DACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLE----FMKEAGFAHMRICDGV 308
A L+++ + G S D++T +++ + M + + E ++ G RI +G
Sbjct: 242 GARDLLREVMVVQGTSGEDMVTQVYQEVSKMAMDDLISSEDYIKLVEHIGEYDFRIREGA 301
Query: 309 GSYLQLCGLLAKL 321
+QL LL K
Sbjct: 302 NPRIQLEALLTKF 314
>gi|255513870|gb|EET90135.1| Replication factor C [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 316
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 123/314 (39%), Positives = 190/314 (60%), Gaps = 2/314 (0%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PW EKYRP + +++G V RL + GN PN+I AG G GKTTS +A+A +L
Sbjct: 1 MPWTEKYRPKSLDEVIGQKQIVERLKAFVKQGNFPNMIFAGSAGVGKTTSAIAMAKDLYD 60
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+ A ELNASD RGIDV+R ++K FA K +++ K++ LDEAD++TA AQ ALR
Sbjct: 61 DDLNTAFKELNASDARGIDVIRGEVKNFA-KTISIARVPVKIIFLDEADALTADAQHALR 119
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME +S TRF L+ N +SKIIEPIQSRC + RF L+++++ + +V+ E +
Sbjct: 120 RTMEKFSAETRFILSANYASKIIEPIQSRCVVFRFKPLTEDDMKEYVNRIVKGEGITLEK 179
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+EA+I+ DGD+R+ N LQ+ + + +++ V + P + +M+R ++G F
Sbjct: 180 NAMEALIYVGDGDLRKLTNVLQSAAMKSEKITEGDIYDVASRARPKEIMSMLRYAVDGDF 239
Query: 253 DDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
D A + L L G S DI+T +R +N E LKL+ + G A+ RI +G
Sbjct: 240 DKARNELDTLTLKHGMSGEDILTQCYREAQNLHFDEKLKLKIIIYIGEANFRIVEGANER 299
Query: 312 LQLCGLLAKLSIVR 325
+QL +LA++++++
Sbjct: 300 IQLESMLAQIAMLK 313
>gi|291333464|gb|ADD93165.1| putative ATPase family associated with various cellular activities
AAA [uncultured archaeon MedDCM-OCT-S05-C724]
Length = 321
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 188/313 (60%), Gaps = 6/313 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + ++VG RL ++ +MP+L+ AGP G GKTTS LALA E+ G
Sbjct: 5 WIEKYRPNNLSEVVGQEAVTTRLKNYVKESSMPHLLFAGPAGIGKTTSALALAREMFGEL 64
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH--KVVVLDEADSMTAGAQQALR 132
++ + ELNASD+RGIDVVR KIK FA+ T P G+ K++ LDEAD++T AQ ALR
Sbjct: 65 WQHNLHELNASDERGIDVVRGKIKEFAR---TAPLGEKGFKIIFLDEADALTGAAQAALR 121
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME YS + RF ++CN SSKII+PIQSRCA+ RF + E++ L V +E V
Sbjct: 122 RTMEKYSRTCRFVMSCNYSSKIIDPIQSRCAVFRFRPIKAEDLEKYLKFVASKENVKVTK 181
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
E E++ + A GD+R+A+N LQ + V + V++ P VK+ + + L G F
Sbjct: 182 EAFESLTYLAQGDLRRAINGLQMAAAAKTEVTPDVVYQAVAAARPEEVKDALESALAGNF 241
Query: 253 DDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A L L G + D++ + R +++ E+ +++K+ +++ A R+ +G S
Sbjct: 242 STAREKLDTLQITYGLAGEDVLRQMHRTVRDLEIPDNIKVLMIEKMAEADFRLSEGANSR 301
Query: 312 LQLCGLLAKLSIV 324
+Q+ ++A +I+
Sbjct: 302 IQIEAVVASFAIL 314
>gi|325969252|ref|YP_004245444.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
gi|323708455|gb|ADY01942.1| AAA ATPase central domain protein [Vulcanisaeta moutnovskia 768-28]
Length = 327
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 134/315 (42%), Positives = 188/315 (59%), Gaps = 10/315 (3%)
Query: 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH 68
S+ + WVEKYRP+++ DI+ AR+ + +GN+P+L+ GPPGTGKTT LA+A
Sbjct: 2 SSEETLWVEKYRPSRIDDIIDQDHVKARVKEMLANGNIPHLLFFGPPGTGKTTMALAIAR 61
Query: 69 ELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAG 126
EL G +RE V+ELNASD+RGI ++R K+K FA+ T+P K ++++LDEAD+MT
Sbjct: 62 ELYGDAWRENVLELNASDERGIAMIREKVKEFAK---TIPTVKAPFRLIILDEADNMTPD 118
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQQALRR ME+Y++S RF L N SS IIEPIQSRC++ RFS L + +L RL + E
Sbjct: 119 AQQALRRIMEMYTSSVRFILLANYSSGIIEPIQSRCSLFRFSPLPKDAVLGRLRDIASRE 178
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
V E LEAI + GDMR+A+N LQA S V++E V+K + P V+ ++
Sbjct: 179 GVKVTDEALEAIWDISQGDMRKAINTLQAAASLGGVVDEEAVYKALGKVSPTRVRAIITE 238
Query: 247 VLEGKFDDAC-SGLKQLYDLGYSPTDIITTLFRII----KNYEMAEHLKLEFMKEAGFAH 301
+ G F A + + D G P DII R + ++ E LK + + G H
Sbjct: 239 AVIGDFSKAVKEAMSLIRDEGADPLDIIKIAHREVASATSQLKVPEELKPKAIYIVGEHH 298
Query: 302 MRICDGVGSYLQLCG 316
R+ G LQ+ G
Sbjct: 299 YRLLRGSSGELQVYG 313
>gi|48477659|ref|YP_023365.1| replication factor C small subunit [Picrophilus torridus DSM 9790]
gi|50400868|sp|Q6L1I0.1|RFCS_PICTO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|48430307|gb|AAT43172.1| replication factor C, small subunit [Picrophilus torridus DSM 9790]
Length = 318
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 127/311 (40%), Positives = 189/311 (60%), Gaps = 3/311 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W EKYRP ++ D++G + + L ++G++P+LI AGP GTGKT++ +AL EL G +
Sbjct: 5 WTEKYRPKRLDDVIGEDENINTLKSFVKNGDLPHLIFAGPAGTGKTSTAIALTIELFGDD 64
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++E +ELNASD+RGID++RN IK FA+ + + G K++ LDEAD +T AQ ALRRT
Sbjct: 65 WKENFLELNASDERGIDIIRNNIKDFAKIRPSNKLG-FKIIFLDEADQLTNEAQAALRRT 123
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME++ ++TRF +CN SSKII PIQSRC ++RF L E + +L + + EK +
Sbjct: 124 MEMFYSTTRFIFSCNYSSKIIPPIQSRCVVLRFRPLDKEAMERKLREIAKNEKFDIDDDS 183
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
L+AI +DGDMR+A+N +QA S + ++++ + + KN++ L G F D
Sbjct: 184 LDAIYEISDGDMRKAINVMQAIQSTGE-IKPSKIYEISGEINKNEYKNLISLSLNGAFSD 242
Query: 255 ACSGL-KQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A S L K L D G S DII + I+N +A KLE + RI G +Q
Sbjct: 243 AKSLLDKMLVDYGLSGIDIIRGMHSAIRNERIANRQKLEILIALAEFEFRISQGGSDNVQ 302
Query: 314 LCGLLAKLSIV 324
+ LLA++S +
Sbjct: 303 MDALLARISYI 313
>gi|159041324|ref|YP_001540576.1| ATPase central domain-containing protein [Caldivirga maquilingensis
IC-167]
gi|157920159|gb|ABW01586.1| AAA ATPase central domain protein [Caldivirga maquilingensis
IC-167]
Length = 318
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 133/320 (41%), Positives = 194/320 (60%), Gaps = 10/320 (3%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY 75
+E++RP ++ D+V L R G++P+L+ GPPG GKTT+ LALA EL G ++
Sbjct: 1 MERFRPVRLVDLVDQEGVKVGLMEFVRRGDLPHLLFYGPPGVGKTTAALALARELYGDSW 60
Query: 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQALRR 133
R +V+ELNASD+RGIDV+R K+K FA+ T+P G K+V+LDEAD+MT+ AQQALRR
Sbjct: 61 RSSVLELNASDERGIDVIREKVKEFAR---TIPTGPVPFKLVILDEADNMTSDAQQALRR 117
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
ME+Y+++TRF L N S IIEPIQSRCAI RF+ L E ++ RL + +E V +
Sbjct: 118 IMEMYASTTRFILLANYISGIIEPIQSRCAIFRFNPLPKEAVIERLRQIAKETGVEVTED 177
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
GLEAI + GDMR+A+N LQ T + + V++ V+++ +P V++++ L G F
Sbjct: 178 GLEAIWEVSQGDMRKAINTLQTTTTTNKKVDENAVYQLFGGINPQEVRDLIYEALNGDFG 237
Query: 254 DACSGLKQLY-DLGYSPTDIITTLFR----IIKNYEMAEHLKLEFMKEAGFAHMRICDGV 308
A GLK + D G P II L R + E+LK + H I G
Sbjct: 238 KAIMGLKSMIRDRGVDPIYIIRLLHREVTSTVSKINAPEYLKPRIIYSIAMRHHAILRGS 297
Query: 309 GSYLQLCGLLAKLSIVRETA 328
Q+ GLLA++ ++ +++
Sbjct: 298 DDLTQVIGLLAEIRLMLKSS 317
>gi|361129755|gb|EHL01637.1| putative Replication factor C subunit 4 [Glarea lozoyensis 74030]
Length = 194
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 109/153 (71%), Positives = 134/153 (87%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
Y++PWVEKYRP + DIVGN + + RL IIA+DGNMP++I++G PG GKTTS+L LA ++
Sbjct: 31 YELPWVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVIISGMPGIGKTTSVLCLARQM 90
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
LG +Y+EAV+ELNASD+RGIDVVRN+IK FAQKKVTLP G+ K+V+LDEADSMT+GAQQA
Sbjct: 91 LGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVTLPQGRQKLVILDEADSMTSGAQQA 150
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCA 163
LRRTMEIYS +TRFA ACN S+KIIEP+QSR A
Sbjct: 151 LRRTMEIYSATTRFAFACNQSNKIIEPLQSRYA 183
>gi|330507468|ref|YP_004383896.1| replication factor C small subunit [Methanosaeta concilii GP6]
gi|328928276|gb|AEB68078.1| replication factor C small subunit [Methanosaeta concilii GP6]
Length = 323
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 189/312 (60%), Gaps = 3/312 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ DIVG + V RL + N+P+L+ +GPPG GKT + +++ E+ G
Sbjct: 8 WIEKYRPERLDDIVGQDEIVRRLKSYVKTRNLPHLLFSGPPGVGKTAASISIVKEIFGET 67
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+R +ELNASD+RGID++R+K+K FA + L KV+ LDEAD++T AQ ALRRT
Sbjct: 68 WRNNFIELNASDERGIDIIRHKVKDFA-RMAPLGEADFKVIFLDEADALTNDAQSALRRT 126
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME YS +TRF L+CN SSKIIEPIQSRCA+ RF LS E + R+ + EE + G
Sbjct: 127 MERYSATTRFILSCNYSSKIIEPIQSRCAVYRFKPLSPEAVTKRIKFIASEEGLRVSDGG 186
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
L AI + A GDMR+A+N LQA V++E ++++ P +K+ ++ + G F
Sbjct: 187 LSAIEYVAGGDMRKAINALQAAALLGDEVDEETIYQITSTAKPEEIKSFIKTAISGDFVG 246
Query: 255 ACSGLKQ-LYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
A + L L G S D++ + R + + ++A+ +++ + G R+ +G +
Sbjct: 247 ARAILDDLLLSKGLSGQDVVIQIHRAMLDLDDIADRDRVKLIDRIGEIDFRMTEGANERI 306
Query: 313 QLCGLLAKLSIV 324
QL LLA +++
Sbjct: 307 QLEALLAYFALM 318
>gi|126179196|ref|YP_001047161.1| replication factor C small subunit [Methanoculleus marisnigri JR1]
gi|150415672|sp|A3CUX9.1|RFCS_METMJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|125861990|gb|ABN57179.1| replication factor C small subunit [Methanoculleus marisnigri JR1]
Length = 322
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 186/313 (59%), Gaps = 2/313 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ ++VG D V RL + GN+P+L+ G G GKTT+ +ALA E G +
Sbjct: 8 WIEKYRPRRLDEMVGQKDIVVRLQSYVKTGNLPHLLFTGSAGIGKTTAAVALAREFFGDS 67
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++ E+NASD+RGIDVVRN+IK FA+ L K++ LDEAD++T AQ ALRRT
Sbjct: 68 WQTNFREMNASDERGIDVVRNQIKEFARTS-PLAGATFKILFLDEADALTTDAQAALRRT 126
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME Y+ + RF L+CN SSKII+PIQSRCAI RF L E ++ + E +
Sbjct: 127 METYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEETRRIAAAEGLTVTEGA 186
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
L+AI++ A GDMR+A+N LQ +++E +F++ P + ++ + G+FD+
Sbjct: 187 LDAIVYVASGDMRKAINALQGAAILRTDIDEETIFEITATARPEEIDELLDLSIGGRFDE 246
Query: 255 ACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A L +L + G +P ++I +R + ++ LK++ + G R+ +G S +Q
Sbjct: 247 AEQALLELTHVRGIAPNELINQCYRALVQRDIDRTLKVKLIDALGETDFRLSEGASSDIQ 306
Query: 314 LCGLLAKLSIVRE 326
+ LLA+ + E
Sbjct: 307 MEALLARFVLAAE 319
>gi|159041490|ref|YP_001540742.1| replication factor C [Caldivirga maquilingensis IC-167]
gi|157920325|gb|ABW01752.1| Replication factor C [Caldivirga maquilingensis IC-167]
Length = 348
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 131/323 (40%), Positives = 198/323 (61%), Gaps = 9/323 (2%)
Query: 8 SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
S ++ WVE++RP ++ D+V L R G++P+L+ GPPG GKTT+ LALA
Sbjct: 2 SELKELLWVERFRPVRLVDLVDQEGVKVGLMEFVRRGDLPHLLFYGPPGVGKTTAALALA 61
Query: 68 HELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTA 125
EL G ++R +V+ELNASD+RGIDV+R K+K FA+ T+P G K+V+LDEAD+MT+
Sbjct: 62 RELYGDSWRSSVLELNASDERGIDVIREKVKEFAR---TIPTGPVPFKLVILDEADNMTS 118
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQQALRR ME+Y+++TRF L N S IIEPIQSRCAI RF+ L E ++ RL + +E
Sbjct: 119 DAQQALRRIMEMYASTTRFILLANYISGIIEPIQSRCAIFRFNPLPKEAVIERLRQIAKE 178
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
V +GLEAI + GDMR+A+N LQ T + + V++E V++V + V +
Sbjct: 179 TGVEVTEDGLEAIWEVSQGDMRKAINTLQTTTTTNKKVDREAVYRVVGRVEFKVVDEFIE 238
Query: 246 NVLEGKFDDACSGLKQ-LYDLGYSPTDIITTL---FRIIKNYEMAEHLKLEFMKEAGFAH 301
+ L G+F+D+ L+ +Y G S +++ + I +++ K+E +
Sbjct: 239 SALSGRFEDSRKLLRNIMYTYGVSGVELLKYIEDELLINDKFKLPVDAKVEVSELVADID 298
Query: 302 MRICDGVGSYLQLCGLLAKLSIV 324
R+ G +QL L+AKL+++
Sbjct: 299 NRLVTGSDEEIQLTALIAKLALI 321
>gi|395645923|ref|ZP_10433783.1| Replication factor C small subunit [Methanofollis liminatans DSM
4140]
gi|395442663|gb|EJG07420.1| Replication factor C small subunit [Methanofollis liminatans DSM
4140]
Length = 322
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/308 (40%), Positives = 184/308 (59%), Gaps = 6/308 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + D+VG + V RL R G++P+L+ GP G GKTT+ +ALA E G
Sbjct: 8 WIEKYRPQTLEDMVGQEEIVERLRSYVRSGSLPHLLFTGPAGVGKTTAAVALAREFFGET 67
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGAQQALR 132
++ ELNASD+RGIDVVRN+IK FA+ T P G KV+ LDEAD++T AQ ALR
Sbjct: 68 WQMNFRELNASDERGIDVVRNQIKQFAR---TSPLGGATFKVLFLDEADALTPDAQAALR 124
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME Y+ + RF L+CN SSKII+PIQSRCAI RF L + + ++ V E++
Sbjct: 125 RTMENYAQTCRFILSCNYSSKIIDPIQSRCAIYRFKGLDEAAVAEQVRRVAAAEEISLTD 184
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+ + AI + A+GDMR+ALN LQ ++ +++ P + +++ +G F
Sbjct: 185 DAVHAIAYIAEGDMRKALNALQGAAILSDRIDARMIYETTSTAKPEEIADLLGLCTKGDF 244
Query: 253 DDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A L+ L + G +P ++I FR + +Y+M LK+ ++ G A RI +G +
Sbjct: 245 TGAQGALRHLLRNRGIAPGELINQCFRALTSYQMDTALKVAYIDHIGEADFRISEGADAE 304
Query: 312 LQLCGLLA 319
+Q+ L+A
Sbjct: 305 IQMDALIA 312
>gi|126459198|ref|YP_001055476.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
gi|126248919|gb|ABO08010.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
Length = 324
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 136/316 (43%), Positives = 186/316 (58%), Gaps = 12/316 (3%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++ W EKYRP ++V + ARL + GN+P+L+ GPPGTGKTT L LA EL
Sbjct: 3 ELFWFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELY 62
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQ 129
G +RE +ELNASD+RGI V+R ++K FA+ T P GK K+V+LDEAD+MT+ AQQ
Sbjct: 63 GEYWRENTLELNASDERGIGVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQ 119
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRR MEIY+ +TRF L N S IIEPIQSR ++RF+ L E ++SRL + + E V
Sbjct: 120 ALRRIMEIYAQNTRFILLANYVSNIIEPIQSRVVMIRFNPLPKEAVISRLRFIAENEGVK 179
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
+ LEAI GDMR+A+N LQ S R V +E V K P ++ +++ +
Sbjct: 180 VSDDALEAIYEFTQGDMRKAINALQVAASVSREVTEEEVAKALGMVSPRLLREVLQEATK 239
Query: 250 GKFDDACSGLKQLY----DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
G F+ A L Q+Y D G +II L R + ++ E++K E + G AH I
Sbjct: 240 GSFNKA---LTQIYGFVVDGGVGELEIIRQLHREVLRLDVPEYVKPELVYIVGRAHYAIL 296
Query: 306 DGVGSYLQLCGLLAKL 321
G Q+ G LAK+
Sbjct: 297 RGARGLAQIYGALAKI 312
>gi|219852692|ref|YP_002467124.1| replication factor C small subunit [Methanosphaerula palustris
E1-9c]
gi|219546951|gb|ACL17401.1| Replication factor C [Methanosphaerula palustris E1-9c]
Length = 326
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 183/307 (59%), Gaps = 2/307 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+E+YRPT++ DIVG + RL + ++P+L+ G G GKTT+ +ALA E G
Sbjct: 9 WIERYRPTRLADIVGQDEITERLISYVKGRSLPHLLFTGSAGIGKTTAAVALAREFFGEA 68
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+ E+NASD+RGIDVVRN+IK FA+ L + K++ LDEAD++T AQ ALRRT
Sbjct: 69 WHINFREMNASDERGIDVVRNQIKQFARTS-PLEGAEFKILFLDEADALTTDAQAALRRT 127
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME YS RF L+CN SSKII+PIQSRCAI RF L+ E I + + +E + P+
Sbjct: 128 METYSRGCRFILSCNYSSKIIDPIQSRCAIYRFRPLTPEAISEEIGKIAGKEGITVTPDA 187
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
+EAI++ A GDMR+A+N LQ + ++QE V+ + P ++ ++ +L G F+
Sbjct: 188 IEAIVYIAQGDMRKAINALQGASIVSKSIDQEMVYAITSSARPDEIEELLGLILVGDFEG 247
Query: 255 ACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L L + G +P +++ ++R + M LK+ + G R+ +G LQ
Sbjct: 248 AEAVLLALMHTRGIAPAELLGQVYRALSGRSMERELKVALIGHLGETDFRLSEGASPDLQ 307
Query: 314 LCGLLAK 320
+ LLA+
Sbjct: 308 MEALLAR 314
>gi|317575745|ref|NP_001187540.1| replication factor C subunit 4 [Ictalurus punctatus]
gi|308323307|gb|ADO28790.1| replication factor c subunit 4 [Ictalurus punctatus]
Length = 358
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 192/327 (58%), Gaps = 13/327 (3%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
+SS + +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 22 SSSGENKRQKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 81
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKV--------TLPPGKH 112
+ILA A EL GP YR+ V+ELNASD+RGI V+R K+K FAQ V + PP
Sbjct: 82 TILAAARELYGPELYRQRVLELNASDERGIQVIREKVKNFAQLTVAGTRTDGKSCPP--F 139
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+++LDEADSMT AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF L++
Sbjct: 140 KIIILDEADSMTGAAQAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLTN 199
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFK 230
E RL+ + +E + Y EG++A++ ++GD+R+A+ LQ+T +S + + + V +
Sbjct: 200 EVQQERLLEICAKENLKYSKEGIDALVKVSEGDLRKAITLLQSTARFSAEKEITESLVIE 259
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLK 290
+ P ++N+++ +G F+ +K L D GY+ T I++ +I ++ + K
Sbjct: 260 IAGVVPPKVIENLLQTCYKGNFEKLEVAVKNLVDEGYAATQILSQFHDVIIEEKLGDKQK 319
Query: 291 LEFMKEAGFAHMRICDGVGSYLQLCGL 317
++ + DG YLQL L
Sbjct: 320 SVITEKMAVVDKCLVDGADEYLQLLNL 346
>gi|307595017|ref|YP_003901334.1| replication factor C [Vulcanisaeta distributa DSM 14429]
gi|307550218|gb|ADN50283.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
Length = 327
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 133/315 (42%), Positives = 188/315 (59%), Gaps = 10/315 (3%)
Query: 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH 68
S+ ++ WVEKYRP+++ DI+ AR+ + +GN+P+L+ GPPGTGKTT LA+A
Sbjct: 2 SSEEVLWVEKYRPSRIDDIIDQDHVKARVKEMLANGNIPHLLFFGPPGTGKTTMALAIAR 61
Query: 69 ELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAG 126
EL G +RE V+ELNASD+RGI ++R K+K FA+ T+P K ++++LDEAD+MT
Sbjct: 62 ELYGDAWRENVLELNASDERGIAMIREKVKEFAK---TMPTVKAPFRLIILDEADNMTPD 118
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQQALRR ME+Y+ S RF L N S IIEPIQSRC++ RFS L + +L RL + +E
Sbjct: 119 AQQALRRIMEMYTTSVRFILLANYPSGIIEPIQSRCSLFRFSPLPKDAVLGRLREIASKE 178
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
V + LEAI + GDMR+A+N LQA S V++E V+K + P V+ +V
Sbjct: 179 GVKVTDDALEAIWDVSQGDMRKAINTLQAAASLGGVVDEEVVYKALGKVSPTKVRTIVTE 238
Query: 247 VLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRII----KNYEMAEHLKLEFMKEAGFAH 301
+ G F A + L D G P DII + R + ++ E LK + + H
Sbjct: 239 AVVGDFGKAVREVMSLIRDEGADPLDIIKIIHREVVSAASQLKVPEELKPKAVYIVSEHH 298
Query: 302 MRICDGVGSYLQLCG 316
R+ G LQ+ G
Sbjct: 299 YRLLRGSSGELQVYG 313
>gi|225718872|gb|ACO15282.1| Replication factor C subunit 5 [Caligus clemensi]
Length = 345
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 124/323 (38%), Positives = 190/323 (58%), Gaps = 5/323 (1%)
Query: 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH 68
+A ++PWVEKYRP + D+V + D V + ++ MP+++ GPPGTGKT++ILA +
Sbjct: 11 AALNLPWVEKYRPKDLSDLVSHEDIVGTIRRFVKESRMPHMLFYGPPGTGKTSAILAASR 70
Query: 69 ELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQ-KKVTLPPG--KHKVVVLDEADSMTA 125
E+ G +V+ELNASDDRGIDV R +I FA K++ + G K+++LDEAD+MT
Sbjct: 71 EVFGETSNSSVLELNASDDRGIDVARGRILNFASTKRIAIQAGTASFKLIILDEADAMTN 130
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRR +E ++++ RF L CN SKII +QSRC RF+ L+ E+IL RL VV+E
Sbjct: 131 DAQNALRRIIEKFTDNVRFCLICNYLSKIIPALQSRCTRFRFAPLASEQILPRLQAVVKE 190
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E + P+G +A++ A GDMR+ LN LQ+ F +N+ N++ P P + +
Sbjct: 191 ESLEMSPDGAKALLTLAKGDMRRILNILQSCSMAFPVINESNIYACTGHPPPSDISLALE 250
Query: 246 NVLEGKFDDACSGLK-QLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
++L A + QL G S DI+T L ++ E++ +K++ + + A R
Sbjct: 251 SLLNDDLQKAYQTIHVQLQTTKGLSLIDILTELHLLVHRLEISNRVKVKLLIKLADAEHR 310
Query: 304 ICDGVGSYLQLCGLLAKLSIVRE 326
+ G +QL ++A RE
Sbjct: 311 LLSGTSEKIQLGAVVAAFRTARE 333
>gi|282164500|ref|YP_003356885.1| replication factor C small subunit [Methanocella paludicola SANAE]
gi|282156814|dbj|BAI61902.1| replication factor C small subunit [Methanocella paludicola SANAE]
Length = 332
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 127/323 (39%), Positives = 192/323 (59%), Gaps = 6/323 (1%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
A D W EKYRP + +++G V RL + GN+P+L+ +GPPG GKT +ALA +
Sbjct: 12 ASDDVWTEKYRPKTLDEVIGQEQIVRRLKSYVKTGNLPHLLFSGPPGVGKTACAVALAKD 71
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGA 127
+ G ++ ELNASD+RGIDVVRN IK FA+ T P G + K++ LDEAD++T+ A
Sbjct: 72 MFGDTWQNNFTELNASDERGIDVVRNNIKNFAR---TAPLGDARFKIIFLDEADALTSDA 128
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
Q ALRRTME Y+ + RF ++CN SSKIIEPIQSRCA+ RF L ++I + + + E
Sbjct: 129 QSALRRTMERYTATCRFIISCNYSSKIIEPIQSRCAVYRFGPLGPKDIETMARRIEKGEG 188
Query: 188 VPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNV 247
+ +GL+AII+ A GDMR+A+N LQ+ + + + E V++ P ++ M++
Sbjct: 189 IKITKDGLDAIIYVARGDMRRAVNALQSASTVSKDITAEAVYETTSTARPKEIEEMLKLA 248
Query: 248 LEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICD 306
L G+F D+ + L L G S +DII ++ + + + E + + + G A R+ +
Sbjct: 249 LNGQFMDSRNKLDDLLIKYGLSGSDIIDQIYASMFSLGLDEDVLVALVDRIGEADFRLTE 308
Query: 307 GVGSYLQLCGLLAKLSIVRETAK 329
G +Q+ LLA + E K
Sbjct: 309 GGNERIQVEALLAHFKMHGEAMK 331
>gi|410670416|ref|YP_006922787.1| replication factor C [Methanolobus psychrophilus R15]
gi|409169544|gb|AFV23419.1| replication factor C [Methanolobus psychrophilus R15]
Length = 301
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 126/300 (42%), Positives = 182/300 (60%), Gaps = 6/300 (2%)
Query: 27 IVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASD 86
+VG + V RL + N+P+L+ +GPPG GKT + +++A EL G ++RE ELNASD
Sbjct: 1 MVGQTETVERLKSYIKTRNLPHLLFSGPPGVGKTATSVSIARELFGDSWRENFTELNASD 60
Query: 87 DRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRF 144
+RGIDVVR KIK FA+ T P G K++ LDEAD++T+ AQ ALRRTME Y+N+ RF
Sbjct: 61 ERGIDVVRTKIKNFAK---TTPIGGADFKIIFLDEADALTSDAQSALRRTMERYTNNCRF 117
Query: 145 ALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG 204
L+CN SSKIIEPIQSRCA+ RF LSDE + R+ V Q E + +G++AI + A G
Sbjct: 118 ILSCNYSSKIIEPIQSRCAVYRFRPLSDEAVAGRVRFVAQNEGLDIAEDGVDAIKYVAQG 177
Query: 205 DMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQ-LY 263
DMR+A+N+LQA ++++ ++K+ P V+ ++ L G F A L L
Sbjct: 178 DMRKAINSLQAAALIADTIHRDAIYKITATARPEQVRELIETALSGNFTAARKHLDVFLL 237
Query: 264 DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSI 323
+ G S D+I ++R I + E +E + G R+ +G +QL LLA ++
Sbjct: 238 EQGLSGEDVIGQVYRAIFEINIPEKKMVELIDVIGEIDFRLTEGANERIQLESLLAHFAL 297
>gi|148643236|ref|YP_001273749.1| replication factor C small subunit [Methanobrevibacter smithii ATCC
35061]
gi|158513780|sp|A5UMF3.1|RFCS_METS3 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|148552253|gb|ABQ87381.1| replication factor C, small subunit, RfcS [Methanobrevibacter
smithii ATCC 35061]
Length = 315
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 127/313 (40%), Positives = 185/313 (59%), Gaps = 7/313 (2%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + DI+G V RL + +MPNL+ GP G GKTT+ +AL +LG
Sbjct: 4 PWVEKYRPQNLDDIIGQKQIVNRLQKYVGEESMPNLMFTGPAGVGKTTTAIALVKAILGE 63
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
+R+ +ELNASD RGID VRN IK F + K P +++ LDE D+MT AQ ALRR
Sbjct: 64 YWRQNFLELNASDARGIDTVRNDIKNFCRLKPVGAP--FRIIFLDEVDNMTKDAQHALRR 121
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
ME+Y+ + F L+CN SSKII+PIQSRCAI RF + EEI +RL + E+ Y
Sbjct: 122 EMEMYTKTASFILSCNYSSKIIDPIQSRCAIFRFGPIKGEEIANRLKYICTSERFEYTDG 181
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
G+EAI + A+GDMR+A+N LQA S + V+++ V++V + P V N++ L G F
Sbjct: 182 GIEAIEYFAEGDMRKAVNVLQAAASEGKQVDEDAVYEVVSKAKPQDVHNLITKALSGDFM 241
Query: 254 DACSGLKQLYDL-GYSPTDIITTLFRIIKNY----EMAEHLKLEFMKEAGFAHMRICDGV 308
A + L++ L G S D+++ +++ + +M + ++ ++ RI +G
Sbjct: 242 GARNLLRETMVLQGTSGEDMVSQIYQDVSKRVFEGKMEADIYIDLIEAIADCDFRIREGA 301
Query: 309 GSYLQLCGLLAKL 321
+QL LL +
Sbjct: 302 NPRIQLEALLTQF 314
>gi|388858041|emb|CCF48278.1| probable RFC3-DNA replication factor C, 40 kDa subunit [Ustilago
hordei]
Length = 343
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 126/334 (37%), Positives = 199/334 (59%), Gaps = 9/334 (2%)
Query: 4 SSSSSSAYDI---PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+S+S+SA D+ PWVEKYRP + D+V + D + + +P+L+ GPPGTGKT
Sbjct: 12 TSASASATDLDLLPWVEKYRPATLEDLVSHKDITSTIQNFIDRNRLPHLLFYGPPGTGKT 71
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQ-KKVTLPPGKHKVVVLDE 119
++ILA+A ++ GP +R +V+ELNASDDRGI+VVR +IK FA K V G K++VLDE
Sbjct: 72 STILAMARKIFGPQFRNSVLELNASDDRGIEVVREQIKGFASTKSVFSSKGGFKLIVLDE 131
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
AD+MT AQ ALRR +E Y+ + RF + CN +KII IQSRC RF+ L +++ RL
Sbjct: 132 ADAMTQAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLQLDQVEDRL 191
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH 239
V++ E +G EA++ + GDMR+ALN LQA ++ +++ V+ PHP
Sbjct: 192 NHVIENEGCKITQDGKEALLKLSRGDMRRALNVLQACHAASDHIDETAVYNCTGNPHPSD 251
Query: 240 VKNMVRNVLEGKFDDA---CSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKE 296
++ M++++++ +F A SGLK G + D+I+ ++ ++ ++ K+ +
Sbjct: 252 IEAMLKSMMQEEFTTAYTTISGLKTAK--GIALADMISGVYDLLATIKLPAKSKIYLLDH 309
Query: 297 AGFAHMRICDGVGSYLQLCGLLAKLSIVRETAKA 330
R+ G +QL LL + + E ++A
Sbjct: 310 LAHTEHRLSTGGSEKIQLTALLGAVKVAVELSQA 343
>gi|88602285|ref|YP_502463.1| replication factor C small subunit [Methanospirillum hungatei JF-1]
gi|110287812|sp|Q2FQT9.1|RFCS_METHJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|88187747|gb|ABD40744.1| replication factor C small subunit [Methanospirillum hungatei JF-1]
Length = 323
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 186/310 (60%), Gaps = 6/310 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + DI+G + + RL MP+L+ G GTGKTT+ +ALA E G +
Sbjct: 8 WIEKYRPRVLEDIIGQQEIIERLRSYVAKREMPHLLFTGNAGTGKTTAAVALAREFFGED 67
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGAQQALR 132
++ ELNASD+RGIDVVRN+IK FA+ T P G K++ LDEAD++T AQ ALR
Sbjct: 68 WQMNFRELNASDERGIDVVRNQIKQFAR---TSPFGGSTFKILFLDEADALTTDAQSALR 124
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME Y+ + RF L+CN S+KII+PIQSRCAI RF L + + + + ++ +
Sbjct: 125 RTMETYAQTCRFILSCNYSAKIIDPIQSRCAIYRFRPLGRQAVSEMVKRISADQNLTVTE 184
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
E ++AI + A GDMR+A+N LQ R ++ + +F + P + +++ L G F
Sbjct: 185 EVIDAIFYVAQGDMRKAINALQGAAILGRDISPDMIFAITATARPEEIDDLIDLSLAGNF 244
Query: 253 DDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A S L+ L+D G +P ++I+ L+R + ++ E +K+ + G R+ +G GS
Sbjct: 245 LGAGSSLQALLHDRGIAPQELISQLYRAVVKRDLPEAVKVRLIDSLGETDFRLSEGAGSD 304
Query: 312 LQLCGLLAKL 321
+Q+ L+AK
Sbjct: 305 IQMQSLIAKF 314
>gi|308322095|gb|ADO28185.1| replication factor c subunit 4 [Ictalurus furcatus]
Length = 358
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 191/327 (58%), Gaps = 13/327 (3%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
+SS + +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 22 SSSGENKRQKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 81
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKV--------TLPPGKH 112
+ILA A EL GP YR+ V+ELNASD+RGI V+R K+K FAQ V + PP
Sbjct: 82 TILAAARELYGPELYRQRVLELNASDERGIQVIREKVKNFAQLTVAGTRTDGKSCPP--F 139
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+++LDEADSMT AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF L++
Sbjct: 140 KIIILDEADSMTGAAQAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLTN 199
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFK 230
E RL+ + +E + Y EG++A++ ++GD+R+A+ LQ+T + + + + V +
Sbjct: 200 EVQQERLLEICAKENLKYSKEGIDALVKVSEGDLRKAITLLQSTARFGAEKEITESLVIE 259
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLK 290
+ P ++N+++ +G F+ +K L D GY+ T I++ +I ++ + K
Sbjct: 260 IAGVVPPKVIENLLQTCYKGNFEKLEVAVKNLVDEGYAATQILSQFHDVIIEEKLGDKQK 319
Query: 291 LEFMKEAGFAHMRICDGVGSYLQLCGL 317
++ + DG YLQL L
Sbjct: 320 SVITEKMAVVDKCLVDGADEYLQLLNL 346
>gi|124485340|ref|YP_001029956.1| replication factor C small subunit [Methanocorpusculum labreanum Z]
gi|158512813|sp|A2SQT3.1|RFCS_METLZ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|124362881|gb|ABN06689.1| replication factor C small subunit [Methanocorpusculum labreanum Z]
Length = 321
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/309 (40%), Positives = 180/309 (58%), Gaps = 3/309 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + ++VG D V RL +P+L+ G G GKTT +ALA E+ G
Sbjct: 8 WIEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAREMFGDT 67
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+ ELNASD+RGIDVVRN+IK FA + L K++ LDEAD++T AQ ALRRT
Sbjct: 68 WNMNFRELNASDERGIDVVRNQIKQFA-RTAPLGDATFKILFLDEADALTQDAQAALRRT 126
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME Y+ + RF L+CN SSKII+PIQSRCAI RF L+DE I + + ++E +
Sbjct: 127 MENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEAISEEIARIAKKEGITIDEGA 186
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
AI + + GDMR+A+N LQ V EN++ + P + +++ LEG F+
Sbjct: 187 YVAITYVSLGDMRKAINALQGAAIVSDHVTAENIYAITSNAKPQEITDLLARCLEGDFET 246
Query: 255 ACSGLKQL-YDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHMRICDGVGSYL 312
A L L YD G +P +++ L+R I E + LK++ + G A R+ +G + +
Sbjct: 247 AERMLHALMYDKGIAPNELLNQLYREISRSETLDRRLKVDLIDHLGEADFRMSEGADADI 306
Query: 313 QLCGLLAKL 321
Q+ LLA++
Sbjct: 307 QMDALLARI 315
>gi|302687482|ref|XP_003033421.1| hypothetical protein SCHCODRAFT_54371 [Schizophyllum commune H4-8]
gi|300107115|gb|EFI98518.1| hypothetical protein SCHCODRAFT_54371 [Schizophyllum commune H4-8]
Length = 343
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 118/308 (38%), Positives = 176/308 (57%), Gaps = 2/308 (0%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + D+V + D + +P+L+ GPPGTGKT++ILA+A + G
Sbjct: 26 LPWVEKYRPVTLDDVVSHKDITTTIDKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYG 85
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
P YR+ ++ELNASDDRGIDVVR +IK FA+ + G K+V+LDEAD MT AQ ALR
Sbjct: 86 PEYRKQILELNASDDRGIDVVREQIKQFAETRTLFSKG-FKLVILDEADMMTQAAQAALR 144
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R +E Y+ + RF + CN KI IQSRC RFS L +E+ R+ +V++ E V P
Sbjct: 145 RVIEQYTRNVRFCIICNYVGKIAPAIQSRCTRFRFSPLPIKEVERRVDLVIEAEGVTITP 204
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+G A++ A GDMR+ LN LQA Y+ + + + V+ PHP ++ +V ++L +F
Sbjct: 205 DGKAALLRLARGDMRRVLNVLQACYAAYEKITENEVYACTGAPHPADIETIVNSMLGDEF 264
Query: 253 DDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A + ++ + G + D+ F I E+ H ++ + R+ G
Sbjct: 265 TTAYEMISKMKTERGLALQDLTAGAFDYIDTIELKPHARIYLLDHLATTEHRLSTGGSEK 324
Query: 312 LQLCGLLA 319
+Q+ LL
Sbjct: 325 IQMTALLG 332
>gi|424814736|ref|ZP_18239914.1| replication factor C small subunit [Candidatus Nanosalina sp.
J07AB43]
gi|339758352|gb|EGQ43609.1| replication factor C small subunit [Candidatus Nanosalina sp.
J07AB43]
Length = 317
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 188/309 (60%), Gaps = 3/309 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W EKYRP + ++VG + + RL + ++P+++ AGP GTGKTTS +ALA +L G
Sbjct: 5 WTEKYRPDTLSEVVGQEEIIDRLSAFVEEESIPHMLYAGPAGTGKTTSAVALAKDLYGDQ 64
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+ + ME NASD+RGIDVVR KIK FA+ K ++K++ LDEAD++T AQQALRRT
Sbjct: 65 WNQNFMETNASDERGIDVVREKIKDFARTKPI--EAEYKIIFLDEADALTPDAQQALRRT 122
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME ++ + RF L+CN SSKII+PIQSRCA+ R++RL +E++ + + + + E +
Sbjct: 123 MEQFTENCRFILSCNYSSKIIDPIQSRCAVFRYNRLEEEDVKNYIQRIGESEGFKVSEDA 182
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
LEA++ +DGD+R+ N LQ + +E+V+ V P + ++ L+ +F D
Sbjct: 183 LEAVMRVSDGDLRRVTNVLQTASIQNSEIEEEDVYGVAASLRPEEITKILELALKERFMD 242
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A L L + G D+I ++ R + + +++E KL + G RI +G +Q
Sbjct: 243 ARDQLSDLMIERGLDGQDVIDSIHREVYDLDISEQAKLTIIDNLGEFEFRISEGGSPDIQ 302
Query: 314 LCGLLAKLS 322
+ LLAK++
Sbjct: 303 IEALLAKIA 311
>gi|71021079|ref|XP_760770.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
gi|46100247|gb|EAK85480.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
Length = 341
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 121/320 (37%), Positives = 189/320 (59%), Gaps = 2/320 (0%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + D+V + D + + +P+L+ GPPGTGKT++ILA+A ++ G
Sbjct: 22 LPWVEKYRPATLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARKIFG 81
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQ-KKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
P +R +V+ELNASDDRGIDVVR +IK FA K V G K++VLDEAD+MT AQ AL
Sbjct: 82 PQFRNSVLELNASDDRGIDVVREQIKSFASTKSVFSSKGGFKLIVLDEADAMTQAAQGAL 141
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR +E Y+ + RF + CN +KII IQSRC RF+ L +++ RL V++ E
Sbjct: 142 RRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLELDQVEDRLNHVIESEGCNIT 201
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+G EA++ + GDMR+ALN LQA ++ +++ V+ PHP ++ ++++++E +
Sbjct: 202 QDGKEALLKLSRGDMRRALNVLQACHAASDHIDETAVYNCTGNPHPHDIEAILKSMMEDE 261
Query: 252 FDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
F A + QL G + DIIT + ++ ++ ++ + R+ G
Sbjct: 262 FTTAFWTVSQLKTAKGIALADIITGFYDLLTTIKLPAKSRIYLLDHLADTEHRLSTGGSE 321
Query: 311 YLQLCGLLAKLSIVRETAKA 330
+QL LL + + E ++A
Sbjct: 322 KIQLTALLGAVKVAVELSQA 341
>gi|321265444|ref|XP_003197438.1| DNA replication factor [Cryptococcus gattii WM276]
gi|317463918|gb|ADV25651.1| DNA replication factor, putative [Cryptococcus gattii WM276]
Length = 373
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/334 (37%), Positives = 194/334 (58%), Gaps = 6/334 (1%)
Query: 1 MASSSSSSSAYD----IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPG 56
+A +++ A D +PWVEKYRP + D+V + D + G +P+L+ GPPG
Sbjct: 38 IAPTAADQKAVDDKEGLPWVEKYRPVSLDDVVSHKDITGTIEKFIEAGRLPHLLFYGPPG 97
Query: 57 TGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVV 116
TGKT+++LALA L G Y++ ++ELNASDDRGIDVVR +IK FA KV G K+V+
Sbjct: 98 TGKTSTVLALARRLYGSAYKKHILELNASDDRGIDVVREQIKNFAMTKVLFSKG-FKLVI 156
Query: 117 LDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEIL 176
LDEAD MT AQ ALRR +E ++ + RF + CN +KI IQSRC RFS L ++EI
Sbjct: 157 LDEADMMTQAAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQ 216
Query: 177 SRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPH 236
++ VVQ+E V +G +A++ + GDMR+ALN LQA ++ + V++ V+ PH
Sbjct: 217 VKVDEVVQKEGVNLTEDGRDALLKLSRGDMRRALNVLQACHAAYDTVDETAVYNCTGNPH 276
Query: 237 PLHVKNMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMK 295
P ++ +V++++ +F A S + L + G + D+I + + E+ + ++ +
Sbjct: 277 PRDIERVVQSMMADEFGTAYSLITSLKIEKGLALQDLIAGAYEFLDTVELPKQSRIYLLD 336
Query: 296 EAGFAHMRICDGVGSYLQLCGLLAKLSIVRETAK 329
G R+ G +QL LL + E ++
Sbjct: 337 HLGSTEHRLSLGGSEKMQLTALLGAFKVAVELSQ 370
>gi|222445467|ref|ZP_03607982.1| hypothetical protein METSMIALI_01106 [Methanobrevibacter smithii
DSM 2375]
gi|261349971|ref|ZP_05975388.1| replication factor C small subunit [Methanobrevibacter smithii DSM
2374]
gi|222435032|gb|EEE42197.1| replication factor C small subunit [Methanobrevibacter smithii DSM
2375]
gi|288860754|gb|EFC93052.1| replication factor C small subunit [Methanobrevibacter smithii DSM
2374]
Length = 315
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/313 (40%), Positives = 184/313 (58%), Gaps = 7/313 (2%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + DI+G V RL + +MPNL+ GP G GKTT+ +AL +LG
Sbjct: 4 PWVEKYRPQNLDDIIGQKQIVNRLQKYVGEESMPNLMFTGPAGVGKTTTAIALVKAILGE 63
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
+R+ +ELNASD RGID VRN IK F + K P +++ LDE D+MT AQ ALRR
Sbjct: 64 YWRQNFLELNASDARGIDTVRNDIKNFCRLKPVGAP--FRIIFLDEVDNMTKDAQHALRR 121
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
ME+Y+ + F L+CN SSKII+PIQSRCAI RF + EEI +RL + E Y
Sbjct: 122 EMEMYTKTASFILSCNYSSKIIDPIQSRCAIFRFGPIKGEEIANRLKYICTSEGFEYTDG 181
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
G+EAI + A+GDMR+A+N LQA S + V+++ V++V + P V N++ L G F
Sbjct: 182 GIEAIEYFAEGDMRKAVNVLQAAASEGKQVDEDAVYEVVSKAKPQDVHNLITKALSGDFM 241
Query: 254 DACSGLKQLYDL-GYSPTDIITTLFRIIKNY----EMAEHLKLEFMKEAGFAHMRICDGV 308
A + L++ L G S D+++ +++ + +M + ++ ++ RI +G
Sbjct: 242 GARNLLRETMVLQGTSGEDMVSQIYQDVSKRVFEGKMEADIYIDLIEAIADCDFRIREGA 301
Query: 309 GSYLQLCGLLAKL 321
+QL LL +
Sbjct: 302 NPRIQLEALLTQF 314
>gi|301114403|ref|XP_002998971.1| replication factor C subunit 5 [Phytophthora infestans T30-4]
gi|262111065|gb|EEY69117.1| replication factor C subunit 5 [Phytophthora infestans T30-4]
Length = 353
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/325 (38%), Positives = 188/325 (57%), Gaps = 6/325 (1%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
SS + S PWVEKYRP+ + D++ + + ++ L + +P+L+ GPPGTGKT+ I
Sbjct: 19 SSRNRSTESWPWVEKYRPSSLDDLIAHQEIISTLNRLIDAQKLPHLLFYGPPGTGKTSMI 78
Query: 64 LALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM 123
+A A L G NY V+ELNASDDRGIDVVRN+IK FA K G K+++LDEADSM
Sbjct: 79 IAAARRLYGKNYGSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSQGV-KLIILDEADSM 137
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T AQ +LRR +E Y+ + RF L CN SKII +QSRC RF+ L++ ++ R+ +
Sbjct: 138 TNDAQFSLRRVIEKYTKNARFCLICNYVSKIIPALQSRCTRFRFAPLNESQVSGRVKHIA 197
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
Q EK+ +G +AI+ GDMR+ LN LQAT V++ NV+ P P ++++
Sbjct: 198 QLEKLNMTEDGFKAILRLGQGDMRRILNILQATSMAHDIVDEANVYLCTGNPLPKDIESV 257
Query: 244 VRNVLEGKFDDA---CSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
+ + F A C+ +++L GY+ +DI+ ++R E+ ++ E
Sbjct: 258 TQWLFNESFTAAVRKCAEMQKLK--GYATSDILQDVYRYTTELELPPRCRMYLYDELAKL 315
Query: 301 HMRICDGVGSYLQLCGLLAKLSIVR 325
R+ +G LQL L+A +I R
Sbjct: 316 EHRLSNGTTEELQLASLVAIFAIAR 340
>gi|242211529|ref|XP_002471602.1| predicted protein [Postia placenta Mad-698-R]
gi|220729278|gb|EED83155.1| predicted protein [Postia placenta Mad-698-R]
Length = 350
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/320 (37%), Positives = 185/320 (57%), Gaps = 5/320 (1%)
Query: 4 SSSSSSAYD---IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+S AYD +PWVEKYRP + D+V + D + + +P+L+ GPPGTGKT
Sbjct: 19 ASEHEEAYDNDNLPWVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKT 78
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
++ILA+A + G +YR+ ++ELNASDDRGIDVVR +IK FA+ + G +K+++LDEA
Sbjct: 79 STILAVARRIYGKDYRKQILELNASDDRGIDVVREQIKNFAETRTLFLKG-YKLIILDEA 137
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D MT AQ ALRR +E Y+ + RF + CN +KII IQSRC RFS L E+ RL
Sbjct: 138 DMMTTAAQAALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPITEVERRLS 197
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
V++ E V +G +A++ + GDMR+ALN LQA ++ + + ++ ++ PHP +
Sbjct: 198 GVIEAEGVKLTEDGKKALLKLSKGDMRRALNVLQACHAAYDLIGEDEIYNCTGNPHPTDI 257
Query: 241 KNMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGF 299
+++V ++L F + + L + G + D+I + I+ + H ++ +
Sbjct: 258 ESVVNSMLSDDFTTSYKMISALKVERGLALPDLINGAYEYIETIDFKPHARIYLLDFLAT 317
Query: 300 AHMRICDGVGSYLQLCGLLA 319
R+ G +QL LL
Sbjct: 318 TEHRLSSGANEKIQLTALLG 337
>gi|312136661|ref|YP_004003998.1| replication factor c small subunit [Methanothermus fervidus DSM
2088]
gi|311224380|gb|ADP77236.1| replication factor C small subunit [Methanothermus fervidus DSM
2088]
Length = 318
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/312 (40%), Positives = 187/312 (59%), Gaps = 7/312 (2%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W EKYRP + D+V V+RL +PNL+ AGP G GKTT LALA E+LG
Sbjct: 5 WTEKYRPKVLDDVVNQKHVVSRLKKYVEKKTLPNLLFAGPAGVGKTTVALALAREILGEY 64
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+++ +ELNASD RGID VR +IK F + + P ++V LDE D+MT AQQALRR
Sbjct: 65 WQQNFLELNASDARGIDTVRTEIKNFCRLRPINAP--FRIVFLDEVDNMTRDAQQALRRE 122
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME+Y+ + F L+CN SSKIIEP+QSRC + RF L ++I+ RL + ++E V Y +
Sbjct: 123 MEMYAETATFILSCNYSSKIIEPVQSRCVVFRFLPLKSKDIIKRLKYICEKENVDYEEKA 182
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
L+AI++ A+GD+R+A+N LQA + + + +++++ V + P V+ M+ L G+F
Sbjct: 183 LDAIVYFAEGDLRKAINILQAAAALDKTITEDDIYDVVSKARPEDVRKMIVKALNGEFLK 242
Query: 255 ACSGLKQ-LYDLGYSPTDIITTLF----RIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
A L++ + G S D+I ++ R+ + E+ E ++F+ G RI +G
Sbjct: 243 AREMLREIMISYGVSGEDLIDQIYREFSRLAIDGEVDEETYVKFVDVIGEYDFRIREGAN 302
Query: 310 SYLQLCGLLAKL 321
+QL LLA L
Sbjct: 303 PRIQLESLLASL 314
>gi|409081372|gb|EKM81731.1| hypothetical protein AGABI1DRAFT_35783 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 344
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/323 (36%), Positives = 185/323 (57%), Gaps = 2/323 (0%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
+ ++ A +PWVEKYRP + D+V + D + + +P+L+ GPPGTGKT++IL
Sbjct: 18 TGTADAESLPWVEKYRPVTLDDVVSHKDITSTIERFIERNRLPHLLFYGPPGTGKTSTIL 77
Query: 65 ALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
A+A + G +Y++ ++ELNASDDRGIDVVR +IK FA+ + G K+++LDEAD MT
Sbjct: 78 AVARRIYGTSYKKQILELNASDDRGIDVVREQIKQFAETRTLFSKG-FKLIILDEADMMT 136
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALRR +E ++ + RF + CN +KI IQSRC RFS L E+ R+ +VV+
Sbjct: 137 QAAQAALRRVIEQFTKNVRFCIICNYVNKITPAIQSRCTRFRFSPLPMTEVEKRVDMVVE 196
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
E VP EG A++ + GDMR+ALN LQA ++ + + + ++ PHP ++ +V
Sbjct: 197 AENVPLTTEGKNALLKLSKGDMRRALNVLQACHAAYDIIGESEIYTCTGNPHPSDIEIIV 256
Query: 245 RNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
++L +F + + ++ + G + D++T F I E+ H ++ + R
Sbjct: 257 NSMLSDEFTASYQMISKMKTERGLALQDLLTGAFDYIDTIELKPHARIYLLDHLASTEHR 316
Query: 304 ICDGVGSYLQLCGLLAKLSIVRE 326
+ G +QL LL E
Sbjct: 317 LSTGGSEKIQLTALLGAFKTAVE 339
>gi|356509379|ref|XP_003523427.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Glycine
max]
Length = 342
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 136/327 (41%), Positives = 187/327 (57%), Gaps = 16/327 (4%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP +V D+ + V L G+ P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 74 N-YREAVMELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGKHKVVVLDEADSMTA 125
Y+ V+ELNASDDRGI+VVR KIK FA Q+K P K++VLDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRKSGYPCPPFKIIVLDEADSMTE 129
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS+E + SR++ + QE
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQE 189
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMV 244
E + E L + + GD+R+A+ LQ+ F ++ EN+ V V+ ++
Sbjct: 190 EGLCLDAEALSTLSSISHGDLRRAITYLQSAARLFGSSISSENLISVSGVVPAKVVEELL 249
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFMKEAGFAHMR 303
+ G FD A + GY + ++T LF I+++ ++++ K K+ G A
Sbjct: 250 KACKSGNFDLANKEVNNFIAEGYPASQMLTQLFESIVEDNDLSDEQKARISKKLGEADKC 309
Query: 304 ICDGVGSYLQLCGLLAKLSIVRETAKA 330
+ DG YLQL L +V T KA
Sbjct: 310 LVDGADEYLQL------LDVVSNTMKA 330
>gi|52317098|ref|NP_999902.2| replication factor C subunit 4 [Danio rerio]
gi|49619077|gb|AAT68123.1| replication factor C subunit RFC4 [Danio rerio]
Length = 358
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 124/314 (39%), Positives = 192/314 (61%), Gaps = 9/314 (2%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT++ILA A EL G
Sbjct: 33 VPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYG 92
Query: 73 PN-YREAVMELNASDDRGIDVVRNKIKMFAQKKV--TLPPGK----HKVVVLDEADSMTA 125
P+ YR+ V+ELNASD+RGI VVR K+K FAQ V T P GK K+++LDEADSMT+
Sbjct: 93 PDLYRQRVLELNASDERGIQVVREKVKRFAQLTVAGTRPDGKTCPPFKIIILDEADSMTS 152
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF L+++ R++ + ++
Sbjct: 153 AAQAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLANDVQQERILEICRK 212
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQ--ATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
E + Y EG++A++ ++GD+R+A+ LQ A + R + ++ + ++ P ++++
Sbjct: 213 ENLKYTTEGVDALVRVSEGDLRKAITFLQSGARLNSEREITEQTIIEIAGVVPPKVIQSL 272
Query: 244 VRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
+ +G F+ +K + D GY+ T+++ L +I ++++ K ++
Sbjct: 273 LHICYKGTFEKLEVAVKDMIDQGYAATNLLNQLHDVIIEEQLSDKQKSVITEKMAEVDKC 332
Query: 304 ICDGVGSYLQLCGL 317
+ DG YLQL L
Sbjct: 333 LADGADEYLQLLSL 346
>gi|408383246|ref|ZP_11180783.1| replication factor C small subunit [Methanobacterium formicicum DSM
3637]
gi|407814028|gb|EKF84666.1| replication factor C small subunit [Methanobacterium formicicum DSM
3637]
Length = 321
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 124/313 (39%), Positives = 187/313 (59%), Gaps = 7/313 (2%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + ++VG + RL + NMPNL+ GP G GKTT+ +ALA +LG
Sbjct: 4 PWVEKYRPQTLDEVVGQDHIIHRLKQYINEANMPNLMFTGPAGVGKTTTAIALAKAMLGE 63
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
+++ +ELNASD RGI+ VR IK F + K P +++ LDE D+MT AQ ALRR
Sbjct: 64 YWKQNFLELNASDARGIETVRKDIKSFCRLKAVGSP--FRIIFLDEVDNMTKDAQHALRR 121
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
ME+Y+ ++ F L+CN SSKII+PIQSRCAI RF+ + +++ RL ++ + E V Y P
Sbjct: 122 EMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFAPIKGHQVIERLEIIAKAENVNYAPG 181
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
LE+I++ A+GDMR+A+N LQ+T S + ++ V V + P V+ +V L+G F
Sbjct: 182 TLESIVYFAEGDMRRAVNILQSTASMGEEITEDIVHDVVSKAKPKDVRRIVNLALDGDFM 241
Query: 254 DACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLE----FMKEAGFAHMRICDGV 308
A L+++ + G S D++T +++ + M + + E ++ G RI +G
Sbjct: 242 GARDLLREVMVVQGTSGEDMVTQVYQEVSRMAMDDLISSEDYIKLVEHIGEYDFRIREGA 301
Query: 309 GSYLQLCGLLAKL 321
+QL LL K
Sbjct: 302 NPRIQLEALLTKF 314
>gi|393222049|gb|EJD07533.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 348
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 116/319 (36%), Positives = 184/319 (57%), Gaps = 2/319 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D+V + D + + +P+L+ GPPGTGKT++ILA+A +
Sbjct: 28 NLPWVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIY 87
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
GP+YR+ ++ELNASDDRGIDVVR ++K FA+ + G K+++LDEAD MT AQ AL
Sbjct: 88 GPDYRKQILELNASDDRGIDVVREQVKQFAETRTLFSKG-FKLIILDEADMMTQAAQAAL 146
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR +E Y+ + RF + CN +KI +QSRC RFS L +E+ RL V++ E V
Sbjct: 147 RRVIEQYTKNVRFCIICNYVNKITPAVQSRCTRFRFSPLPIKEVERRLEGVIEAESVKLT 206
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
P+G +A++ + GDMR+ALN LQA ++ + + + ++ P P ++ +V ++L +
Sbjct: 207 PDGKDALLKLSKGDMRRALNVLQACHAAYDVIGETEIYNCTGSPQPKDIETVVTSMLGDE 266
Query: 252 FDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
F + + L + G + D+IT + I+ E ++ + + R+ G
Sbjct: 267 FTTSYEMISALKIERGLALQDLITGAYDYIETIEFGSQARVYLLDQLASTEYRLSTGGSE 326
Query: 311 YLQLCGLLAKLSIVRETAK 329
+QL LL E +K
Sbjct: 327 KIQLTALLGAFKNAVELSK 345
>gi|58262376|ref|XP_568598.1| DNA replication factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|57230772|gb|AAW47081.1| DNA replication factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 327
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/321 (38%), Positives = 189/321 (58%), Gaps = 5/321 (1%)
Query: 13 IPW---VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
+ W VEKYRP + D+V + D + + G +P+L+L GPPGTGKT+++LALA
Sbjct: 5 VGWDDRVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARR 64
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
L GP YR+ ++ELNASDDRGIDVVR +IK FA KV G K+V+LDEAD MT AQ
Sbjct: 65 LYGPAYRKHILELNASDDRGIDVVREQIKNFAMTKVLFSKG-FKLVILDEADMMTQAAQS 123
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRR +E ++ + RF + CN +KI IQSRC RFS L ++EI ++ VVQ+E V
Sbjct: 124 ALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVN 183
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
+G +AI+ + GDMR+ALN LQA ++ + V++ V+ PHP ++ +V++++
Sbjct: 184 LTDDGRDAILKLSRGDMRRALNVLQACHAAYDIVDETAVYNCTGNPHPRDIERVVQSMMA 243
Query: 250 GKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGV 308
+F A S + L + G + D+I + + E+ + ++ + G R+ G
Sbjct: 244 DEFGTAYSLITSLKIEKGLALQDLIAGAYEFLDTVELPKQSRIYLLDHLGSTEHRLSLGG 303
Query: 309 GSYLQLCGLLAKLSIVRETAK 329
+QL LL + E ++
Sbjct: 304 SEKMQLTALLGAFKVAVELSQ 324
>gi|356515923|ref|XP_003526646.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Glycine
max]
Length = 342
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 186/327 (56%), Gaps = 16/327 (4%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP +V D+ + V L G+ P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 74 N-YREAVMELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGKHKVVVLDEADSMTA 125
Y+ V+ELNASDDRGI+VVR KIK FA Q K P K++VLDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQCKNGYPCPPFKIIVLDEADSMTE 129
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS+E + SR++ + QE
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQE 189
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMV 244
E + E L + F + GD+R+A+ LQ+ F ++ EN+ V V+ ++
Sbjct: 190 EGLCLDAEALSTLSFISHGDLRRAITYLQSAARLFGSSISSENLISVSGVVPAKVVEALL 249
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFMKEAGFAHMR 303
+ G FD A + GY + ++T LF I++ ++++ K K+ G A
Sbjct: 250 KACKSGNFDLANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARISKKLGEADKC 309
Query: 304 ICDGVGSYLQLCGLLAKLSIVRETAKA 330
+ DG YLQL L +V T KA
Sbjct: 310 LVDGADEYLQL------LDVVSNTIKA 330
>gi|426196606|gb|EKV46534.1| hypothetical protein AGABI2DRAFT_71819 [Agaricus bisporus var.
bisporus H97]
Length = 344
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 117/323 (36%), Positives = 185/323 (57%), Gaps = 2/323 (0%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
+ ++ A +PWVEKYRP + D+V + D + + +P+L+ GPPGTGKT++IL
Sbjct: 18 TGNADAESLPWVEKYRPVTLDDVVSHKDITSTIERFIERNRLPHLLFYGPPGTGKTSTIL 77
Query: 65 ALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
A+A + G +Y++ ++ELNASDDRGIDVVR +IK FA+ + G K+++LDEAD MT
Sbjct: 78 AVARRIYGNSYKKQILELNASDDRGIDVVREQIKQFAETRTLFSKG-FKLIILDEADMMT 136
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALRR +E ++ + RF + CN +KI IQSRC RFS L E+ R+ +VV+
Sbjct: 137 QAAQAALRRVIEQFTKNVRFCIICNYVNKITPAIQSRCTRFRFSPLPMTEVEKRVDMVVE 196
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
E VP EG A++ + GDMR+ALN LQA ++ + + + ++ PHP ++ +V
Sbjct: 197 AENVPLTTEGKNALLKLSKGDMRRALNVLQACHAAYDIIGESEIYTCTGNPHPSDIEIIV 256
Query: 245 RNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
++L +F + + ++ + G + D++T F I E+ H ++ + R
Sbjct: 257 NSMLSDEFTASYQMISKMKTERGLALQDLLTGAFDYIDTIELKPHARIYLLDHLASTEHR 316
Query: 304 ICDGVGSYLQLCGLLAKLSIVRE 326
+ G +QL LL E
Sbjct: 317 LSTGGSEKIQLTALLGAFKTAVE 339
>gi|449673561|ref|XP_002160048.2| PREDICTED: replication factor C subunit 2-like [Hydra
magnipapillata]
Length = 178
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 102/146 (69%), Positives = 127/146 (86%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
+Y++PWVEKYRP K+ DI G + + RL + + GN+PN+I+AGPPG GKTTSIL LA +
Sbjct: 31 SYELPWVEKYRPLKLTDITGKEETIKRLQVFSEQGNVPNIIIAGPPGIGKTTSILCLARQ 90
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
LL +Y++AVMELNAS++RGIDVVRNKIKMFAQ+KVTLPPG+HK+++LDEADSMT+GAQQ
Sbjct: 91 LLSTSYKDAVMELNASNERGIDVVRNKIKMFAQQKVTLPPGRHKIIILDEADSMTSGAQQ 150
Query: 130 ALRRTMEIYSNSTRFALACNVSSKII 155
ALRRTME+YS +TRFALACN S KII
Sbjct: 151 ALRRTMELYSKTTRFALACNQSDKII 176
>gi|134118756|ref|XP_771881.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254485|gb|EAL17234.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 327
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 124/321 (38%), Positives = 189/321 (58%), Gaps = 5/321 (1%)
Query: 13 IPW---VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
+ W VEKYRP + D+V + D + + G +P+L+L GPPGTGKT+++LALA
Sbjct: 5 VGWDDRVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARR 64
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
L GP YR+ ++ELNASDDRGIDVVR +IK FA KV G K+V+LDEAD MT AQ
Sbjct: 65 LYGPAYRKHILELNASDDRGIDVVREQIKNFAMTKVLFSKG-FKLVILDEADMMTQAAQS 123
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRR +E ++ + RF + CN +KI IQSRC RFS L ++EI ++ VVQ+E V
Sbjct: 124 ALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVN 183
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
+G +A++ + GDMR+ALN LQA ++ + V++ V+ PHP ++ +V++++
Sbjct: 184 LTDDGRDALLKLSRGDMRRALNVLQACHAAYDIVDETAVYNCTGNPHPRDIERVVQSMMA 243
Query: 250 GKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGV 308
+F A S + L + G + D+I + + E+ + ++ + G R+ G
Sbjct: 244 DEFGTAYSLITSLKIEKGLALQDLIAGAYEFLDTVELPKQSRIYLLDHLGSTEHRLSLGG 303
Query: 309 GSYLQLCGLLAKLSIVRETAK 329
+QL LL + E ++
Sbjct: 304 SEKMQLTALLGAFKVAVELSQ 324
>gi|291238303|ref|XP_002739068.1| PREDICTED: replication factor C 5-like [Saccoglossus kowalevskii]
Length = 331
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 118/317 (37%), Positives = 189/317 (59%), Gaps = 3/317 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP K+ +++ + D ++ + ++ +P+L+ GPPGTGKT++ILA+A +L
Sbjct: 9 NLPWVEKYRPNKLEELISHADILSTIDRFIKEDRLPHLLFYGPPGTGKTSTILAVAKQLY 68
Query: 72 GPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
P + V+ELNASDDRGI +VR + FA + G K+V+LDEAD+MT AQ A
Sbjct: 69 SPKEFNSMVLELNASDDRGIGIVRGPVLSFASTRTIFKSG-FKIVILDEADAMTNDAQNA 127
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ +TRF L CN SKII IQSRC RF L +++++ RL V+Q+E+V
Sbjct: 128 LRRVIEKFTENTRFCLICNYLSKIIPAIQSRCTRFRFGPLDNQQMVPRLEHVIQQERVDV 187
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G+ A++ A+GDMR++LN LQ+T + VN+ NV+ P + N+V +L
Sbjct: 188 TEDGMNALVTLANGDMRKSLNILQSTSMAYDVVNEVNVYTCVGHPLKEDISNIVNWMLNE 247
Query: 251 KFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
F A + + L L G + DI+T + + I E+ ++++ + + + G
Sbjct: 248 DFTTAYNNILDLKTLKGLALQDILTEVHKFIHKVELPTKVRIKLLDKMAEIEYNLTAGTN 307
Query: 310 SYLQLCGLLAKLSIVRE 326
+QL L+A + R+
Sbjct: 308 EKIQLGSLIAAFQVTRD 324
>gi|405974676|gb|EKC39302.1| Replication factor C subunit 5 [Crassostrea gigas]
Length = 336
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 113/317 (35%), Positives = 193/317 (60%), Gaps = 3/317 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP ++ +++ + D ++ + ++ +P+L+ GPPGTGKT++ILA+A ++
Sbjct: 15 NLPWVEKYRPKQLDELISHKDIISTIDKFVKEDRLPHLLFYGPPGTGKTSTILAVAKQIY 74
Query: 72 GPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
P + V+ELNASDDRGI +VR +I FA + G +K+V+LDEAD+MT AQ A
Sbjct: 75 SPKEFNSMVLELNASDDRGIGIVRGQILSFASTRTIFKSG-YKIVILDEADAMTRDAQNA 133
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ +TRF + CN SKII +QSRC RF L ++++ RL V+Q+E+
Sbjct: 134 LRRVIEKFTENTRFCIICNYLSKIIPALQSRCTRFRFGPLGTDQMVPRLQHVIQQEQCNV 193
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G++A++ A+GDMR+ALN LQ+T+ VN++NV+ P ++N++ VL
Sbjct: 194 TEDGMKALVTLANGDMRKALNILQSTHMAHDVVNEDNVYTCVGHPLRRDIENIINWVLNE 253
Query: 251 KFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
F A + + ++ + G + DI+T + + ++ ++K+ + + R+ G
Sbjct: 254 NFTSAYNNILEMKTEKGLALQDILTEVHTYVHRLDLPINVKIHLLDKMAEVEHRLASGTN 313
Query: 310 SYLQLCGLLAKLSIVRE 326
+QL L+A + R+
Sbjct: 314 EKIQLSSLIAAFQVARD 330
>gi|403415842|emb|CCM02542.1| predicted protein [Fibroporia radiculosa]
Length = 358
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 180/309 (58%), Gaps = 2/309 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + DIV + D + + +P+L+ GPPGTGKT++ILA+A +
Sbjct: 38 NLPWVEKYRPVSMDDIVSHKDITSTIEKFIEKNQLPHLLFYGPPGTGKTSTILAVARRIY 97
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G +YR+ ++ELNASDDRGIDVVR +IK FA+ + G +K+++LDEAD MT AQ AL
Sbjct: 98 GNDYRKQILELNASDDRGIDVVREQIKNFAETRTLFLKG-YKLIILDEADMMTTAAQAAL 156
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR +E Y+ + RF + CN +KII IQSRC RFS L E+ RL V++ E V
Sbjct: 157 RRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPIPEVERRLNSVIEAEGVKLT 216
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+G +A++ + GDMR+ALN LQA ++ F + + ++ PHP ++ +V ++L
Sbjct: 217 EDGKKALLKLSKGDMRRALNVLQACHAAFDLIGEAQIYDCTGSPHPSDIETVVNSMLSDD 276
Query: 252 FDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
F + + L + G + D+I + I+ + H+++ + R+ G
Sbjct: 277 FTTSYKMISALKVERGLALPDLINGAYEYIETIDFKPHVRVYVLDFLATTEHRLSTGASE 336
Query: 311 YLQLCGLLA 319
+QL LL
Sbjct: 337 KIQLTALLG 345
>gi|315425403|dbj|BAJ47068.1| replication factor C small subunit [Candidatus Caldiarchaeum
subterraneum]
gi|315427367|dbj|BAJ48977.1| replication factor C small subunit [Candidatus Caldiarchaeum
subterraneum]
gi|343484218|dbj|BAJ49872.1| replication factor C small subunit [Candidatus Caldiarchaeum
subterraneum]
Length = 327
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 127/328 (38%), Positives = 199/328 (60%), Gaps = 8/328 (2%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
S+S ++PWVEKYRP ++ D+V V L I N+P+++ AGPPGTGKT + A
Sbjct: 2 SASDVKNLPWVEKYRPRRLDDVVNQEQVVEALKNIVVSKNVPHMLFAGPPGTGKTATAHA 61
Query: 66 LAHELLGPNYRE--AVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEAD 121
A +L GP Y E +E+NASD+RGI+ +R ++K +A+ ++P G ++++LDE+D
Sbjct: 62 FAQDLFGPRYIEDGHFIEINASDERGIETIRERVKTYAR---SVPFGGIGFRLLLLDESD 118
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
+T AQ A RRTME +S + RF LA N S++IIEPIQSRCA++RF LS + + + L
Sbjct: 119 QLTDAAQHAFRRTMEQFSTTCRFILAANYSNRIIEPIQSRCAVLRFKPLSKDMVETMLKK 178
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ E + ++AI + GDMR+A+N LQ+ S + ++ + ++ V +
Sbjct: 179 IAASENIKLDDSAIDAIYEFSLGDMRKAINILQSAASISKTIDSKTIYDVMGVVSRGEIT 238
Query: 242 NMVRNVLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
M++ VL+GKF +A + L++ LY GY PTDI++++ R I ++E KL M G
Sbjct: 239 RMLQLVLDGKFIEARNLLRELLYVQGYQPTDIVSSIAREIPLLPVSEQDKLRLMDLIGET 298
Query: 301 HMRICDGVGSYLQLCGLLAKLSIVRETA 328
RI +G +QL LAKL++V+ +
Sbjct: 299 DYRISEGGTPEVQLQAFLAKLALVKRSG 326
>gi|333987924|ref|YP_004520531.1| replication factor C small subunit [Methanobacterium sp. SWAN-1]
gi|333826068|gb|AEG18730.1| Replication factor C small subunit [Methanobacterium sp. SWAN-1]
Length = 322
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/314 (39%), Positives = 187/314 (59%), Gaps = 8/314 (2%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLG-IIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
PWVEKYRP + D+VG + RL I + +MPNL+ GP G GKTT+ +ALA +LG
Sbjct: 4 PWVEKYRPQTLDDVVGQDHIINRLKKYIKEETSMPNLMFTGPAGVGKTTTAIALAKAVLG 63
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+R+ +ELNASD RGID VR+ IK F + K P +++ LDE D+MT AQ ALR
Sbjct: 64 EYWRQNFLELNASDARGIDTVRHNIKNFCRLKAVGAP--FRIIFLDEVDNMTKDAQHALR 121
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R ME+Y+ ++ F L+CN SSKII+PIQSRCAI RF+ + ++ RL + E + P
Sbjct: 122 REMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFAPVKGRHVMGRLEAIAAAENLKISP 181
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+E+I++ A+GDMR+A+N LQA+ S V +++V +V + P V+ +V L+G F
Sbjct: 182 GAIESIVYFAEGDMRKAVNILQASSSMDEEVTEDSVHEVVSKAKPKDVRKIVNKALDGDF 241
Query: 253 DDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYEMA----EHLKLEFMKEAGFAHMRICDG 307
A L++ + G S D++T +++ + M E + ++ ++ G RI +G
Sbjct: 242 LGARDLLRESMVVQGTSGEDMVTQIYQEVSRMAMEELIPEDVYIDLIESIGEYDYRIREG 301
Query: 308 VGSYLQLCGLLAKL 321
+QL LL K
Sbjct: 302 ANPRIQLEALLTKF 315
>gi|299116532|emb|CBN74720.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 382
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 126/314 (40%), Positives = 183/314 (58%), Gaps = 2/314 (0%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP+ + ++V + D V L + +P+L+ GPPGTGKT++ILA A +L G
Sbjct: 63 LPWVEKYRPSSLEELVAHEDIVGILQKLIASNKLPHLLFYGPPGTGKTSTILACAKKLYG 122
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+++ V+ELNASDDRGIDVVR +IK FA K G K+V+LDEAD+MT AQ ALR
Sbjct: 123 ADFKMMVLELNASDDRGIDVVRGQIKEFAGTKRLFSSGV-KLVILDEADAMTNDAQFALR 181
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R +E Y+ TRF + CN +KII +QSRC RF+ L E+I RL VV +EKV P
Sbjct: 182 RVIEKYTKHTRFCMICNYVNKIIPALQSRCTKFRFAPLKPEQIQGRLQHVVDQEKVTITP 241
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+G+EA++ GDMR+ LN LQ+T+ ++ V++ + + P ++ + +L F
Sbjct: 242 DGVEAVMRLGQGDMRRVLNLLQSTHMAYQKVDERHAYLCAAAPLKEDMEYIRNALLTASF 301
Query: 253 DDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
DA G+ +L GYS DI+ L + E+ + + + E R+ G
Sbjct: 302 KDAFDGILKLTTAKGYSLGDIVQELALKVMEIELPAAVMVHLLDEMSNTEERLAHGGSER 361
Query: 312 LQLCGLLAKLSIVR 325
LQL L+ + R
Sbjct: 362 LQLGSLVGAFATAR 375
>gi|268325481|emb|CBH39069.1| replication factor C, small subunit [uncultured archaeon]
gi|268325789|emb|CBH39377.1| replication factor C, small subunit [uncultured archaeon]
Length = 322
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 179/312 (57%), Gaps = 5/312 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W EKYRP K+ ++ G + L + N+P+LI +GP G GKT + +A+A E
Sbjct: 7 WTEKYRPRKLEEVSGQEAIIRNLQSYVKKRNLPHLIFSGPAGVGKTAAAVAMAREFYDDT 66
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQALR 132
+ E ELNASD+RGI+VVRN IK FA+ T+P G K++ LDEAD++T AQ ALR
Sbjct: 67 WAENFTELNASDERGIEVVRNTIKNFAR---TMPIGDAAFKIIFLDEADALTDAAQSALR 123
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME YS + RF L+CN SSKIIEPIQSRC++ RF LS + I SR + E +
Sbjct: 124 RTMERYSGTCRFILSCNYSSKIIEPIQSRCSVYRFKSLSYDAIASRAKYIADTEGLTLSE 183
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+ L AI + + GDMR+A+N LQ+ + E ++++ P ++ ++ + G+F
Sbjct: 184 DALRAINYVSMGDMRRAINALQSASVLSNEIKPEMIYEITATARPDEIEALIETAMAGEF 243
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
DA L L D G S +I+ + R+ +++ K+E M G RI +G +
Sbjct: 244 LDALDKLGVLIDKGISGDEILAQMHRLAIKMDISARQKVELMDRIGETDYRITEGANERI 303
Query: 313 QLCGLLAKLSIV 324
QL L+A L +V
Sbjct: 304 QLDALIASLCLV 315
>gi|320163538|gb|EFW40437.1| replication factor C 5 [Capsaspora owczarzaki ATCC 30864]
Length = 348
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/322 (37%), Positives = 191/322 (59%), Gaps = 1/322 (0%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
++S+ ++PWVEKYRP+ + +++ + D ++ + + +P+L+ GPPGTGKT++ILA
Sbjct: 22 AASTNKNLPWVEKYRPSSLDELISHKDIISTIDRFITEDRVPHLLFYGPPGTGKTSTILA 81
Query: 66 LAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
A ++ G + V+ELNASDDRGI VVR +IK FA + G K+V+LDEAD+MT+
Sbjct: 82 CAKKMYGNRMQSMVLELNASDDRGIGVVREQIKEFASTRTITSSGGTKLVILDEADAMTS 141
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRR +E Y+ +TRF L CN SKI IQSRC RF+ LS E++L RL V++
Sbjct: 142 DAQAALRRVIEKYTRNTRFCLICNYVSKITPAIQSRCTRFRFAPLSSEQMLDRLNFVIES 201
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E+V +G A++ A GDMR+ LN LQ+T F V++ +V+ P P ++ +V+
Sbjct: 202 ERVNVTDDGKAALMRLAQGDMRKVLNILQSTAMAFDTVDETSVYTCTGFPLPADIETIVQ 261
Query: 246 NVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRI 304
+L F A + + +L G + DI+ + + E ++++ +K+ R+
Sbjct: 262 WLLNEPFTSAMANIGELKLQKGLALQDILREVHEFMARIEFPANVRIYLLKQLADIEYRL 321
Query: 305 CDGVGSYLQLCGLLAKLSIVRE 326
G +QL L+A + R+
Sbjct: 322 SAGTNERIQLGSLVAVFNTGRD 343
>gi|379003246|ref|YP_005258918.1| DNA polymerase III subunit gamma and tau [Pyrobaculum oguniense
TE7]
gi|375158699|gb|AFA38311.1| DNA polymerase III, gamma/tau subunits [Pyrobaculum oguniense TE7]
Length = 322
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 132/316 (41%), Positives = 179/316 (56%), Gaps = 12/316 (3%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++ W EKYRP ++V + ARL R GNMP+L+ GPPGTGKTT L LA EL
Sbjct: 3 ELFWFEKYRPRSFDEVVDLEEVKARLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELY 62
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQ 129
G +RE +ELNASD+RGI+V+R ++K FA+ T P GK K+V+LDEAD+MT+ AQQ
Sbjct: 63 GEYWRENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQ 119
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRR ME+Y+ +TRF L N S IIEPIQSR ++RFS L E + +RL + E V
Sbjct: 120 ALRRIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADNEGVK 179
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
+ LEAI GDMR+A+N LQ + + + +E V K P ++ + +
Sbjct: 180 ITDDALEAIYEFTQGDMRRAINALQIAATTGKEITEETVAKALGMVSPRLLRETLNDAFR 239
Query: 250 GKFDDACSGLKQLY----DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
G F A + Q+Y D G +I+ L R ++ E+LK E AH I
Sbjct: 240 GNFGKAAT---QIYGFVVDGGIGELEIVKQLHREALKLDVPEYLKPEIAYIIAEAHYAIL 296
Query: 306 DGVGSYLQLCGLLAKL 321
G Q+ G LAK+
Sbjct: 297 RGAHGLTQIYGALAKI 312
>gi|440492171|gb|ELQ74763.1| Replication factor C, subunit RFC2, partial [Trachipleistophora
hominis]
Length = 309
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 192/310 (61%), Gaps = 14/310 (4%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY 75
EKYRP K+ D+VGN + + + I +MP+L+ +GPPGTGK T +A +++ N
Sbjct: 13 TEKYRPRKIGDVVGNHETIESIQSILNANSMPHLLFSGPPGTGKITVAKIIAEKIV--ND 70
Query: 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTM 135
++ ++ELNASD+RGID VR IK F+ + L G KV++LDE DSMT AQQA+RRTM
Sbjct: 71 KKYILELNASDERGIDTVRTTIKNFSMR---LSTG-LKVIILDECDSMTVAAQQAMRRTM 126
Query: 136 EIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGL 195
E + RF L CN KI EPIQSRCAI F+++ +E++ +RL ++ +E + E L
Sbjct: 127 ETSTADCRFILVCNNIQKISEPIQSRCAIFTFNKIKNEDMKTRLNEIISDENLNMSDEAL 186
Query: 196 EAIIFTADGDMRQALNNLQAT-YSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
I+F +D DMRQA+N LQ+T YS + VN+ + K+ QP P +++++ +L+ K ++
Sbjct: 187 NTILFLSDSDMRQAINILQSTLYS--KEVNENVILKITGQPSPKLIESIIILLLKNKVEE 244
Query: 255 ACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQL 314
A S ++ GY P D++ + FR+ KN + E +K +R+ +GVGS LQ
Sbjct: 245 ALSKFDCIWSDGYDPQDLLVSFFRVAKNMD-----NYEILKCISKYQLRLFEGVGSKLQF 299
Query: 315 CGLLAKLSIV 324
LL +S++
Sbjct: 300 YSLLRDISLI 309
>gi|443900350|dbj|GAC77676.1| replication factor C, subunit RFC5 [Pseudozyma antarctica T-34]
Length = 342
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/334 (36%), Positives = 198/334 (59%), Gaps = 5/334 (1%)
Query: 2 ASSSSSSSAYD---IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTG 58
A+ ++SS+A D +PWVEKYRP + D+V + D + + +P+L+ GPPGTG
Sbjct: 9 ATDATSSAAPDQDLLPWVEKYRPVTLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTG 68
Query: 59 KTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTL-PPGKHKVVVL 117
KT++ILA+A ++ G +R +V+ELNASD+RGIDVVR +IK FA K K++VL
Sbjct: 69 KTSTILAMARKIYGAQFRNSVLELNASDERGIDVVREQIKSFASTKSVFGAKAGFKLIVL 128
Query: 118 DEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILS 177
DEAD+MT AQ ALRR +E Y+ + RF + CN +KII IQSRC RF+ L +++ S
Sbjct: 129 DEADAMTQAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLEPDQVES 188
Query: 178 RLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHP 237
RL V++ E P G EA++ + GDMR+ALN LQA ++ +++ V+ PHP
Sbjct: 189 RLQHVIESEHCNITPGGKEALLKLSRGDMRRALNVLQACHAASDHIDETAVYNCTGNPHP 248
Query: 238 LHVKNMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKE 296
++ +++++++ +F A + + L G + D+I+ ++ ++ + ++ ++ +
Sbjct: 249 EDIEAVLKSMMQDEFTTAFNTIVALKTAKGIALADMISGVYDLLASIKLPPKSRIYLLDH 308
Query: 297 AGFAHMRICDGVGSYLQLCGLLAKLSIVRETAKA 330
R+ G LQL LL + I E ++A
Sbjct: 309 LADTEHRLSTGGSEKLQLTALLGAVKIAVELSQA 342
>gi|343425514|emb|CBQ69049.1| probable RFC3-DNA replication factor C, 40 kDa subunit [Sporisorium
reilianum SRZ2]
Length = 342
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 121/331 (36%), Positives = 194/331 (58%), Gaps = 2/331 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
AS+S+ +PWVEKYRP + D+V + D + + +P+L+ GPPGTGKT+
Sbjct: 12 ASASTDQQLDLLPWVEKYRPATLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTS 71
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQ-KKVTLPPGKHKVVVLDEA 120
+ILA+A ++ GP +R +V+ELNASDDRGI+VVR +IK FA K V G K++VLDEA
Sbjct: 72 TILAMARKIFGPQFRNSVLELNASDDRGIEVVREQIKSFASTKSVFSSKGGFKLIVLDEA 131
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D+MT AQ ALRR +E Y+ + RF + CN +KII IQSRC RF+ L +++ RL
Sbjct: 132 DAMTQAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLELDQVEDRLN 191
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
V+ E +G EA++ + GDMR+ALN LQA ++ +++ V+ PHP V
Sbjct: 192 HVIDTEGCKITQDGKEALLKLSRGDMRRALNVLQACHAASDNIDETAVYNCTGNPHPQDV 251
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGF 299
+ ++++++E +F A + +L G + D+I+ ++ ++ ++ ++ +
Sbjct: 252 EAVLKSMMEDEFTTAFRTVSELKTAKGIALADMISGVYDLLATIKLPAKSRIYLLDHLAD 311
Query: 300 AHMRICDGVGSYLQLCGLLAKLSIVRETAKA 330
R+ G +QL LL + + E ++A
Sbjct: 312 TEHRLSTGGSEKIQLTALLGAVKVAVELSQA 342
>gi|145592047|ref|YP_001154049.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
gi|158514167|sp|A4WLY0.1|RFCS2_PYRAR RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|145283815|gb|ABP51397.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
Length = 322
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 132/316 (41%), Positives = 179/316 (56%), Gaps = 12/316 (3%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++ W EKYRP ++V + ARL R GNMP+L+ GPPGTGKTT L LA EL
Sbjct: 3 ELFWFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELY 62
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQ 129
G +RE +ELNASD+RGI+V+R ++K FA+ T P GK K+V+LDEAD+MT+ AQQ
Sbjct: 63 GEYWRENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQ 119
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRR ME+Y+ +TRF L N S IIEPIQSR ++RFS L E + +RL + E V
Sbjct: 120 ALRRIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADNEGVK 179
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
+ LEAI GDMR+A+N LQ + + + +E V K P ++ + +
Sbjct: 180 ISDDALEAIYEFTQGDMRRAINALQIAATTGKEITEETVAKALGMVSPRLLRETLNDAFR 239
Query: 250 GKFDDACSGLKQLY----DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
G F A + Q+Y D G +I+ L R ++ E+LK E AH I
Sbjct: 240 GNFGKAAT---QIYGFVVDGGIGELEIVKQLHREALKLDVPEYLKPEIAYIIAEAHYAIL 296
Query: 306 DGVGSYLQLCGLLAKL 321
G Q+ G LAK+
Sbjct: 297 RGAHGLTQIYGALAKI 312
>gi|18312778|ref|NP_559445.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
gi|42559510|sp|Q8ZWS2.1|RFCS2_PYRAE RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|18160261|gb|AAL63627.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
Length = 319
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 136/326 (41%), Positives = 186/326 (57%), Gaps = 15/326 (4%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++ W EKYRP ++V + ARL + GNMP+L+ GPPGTGKTT L LA EL
Sbjct: 3 ELFWFEKYRPRSFDEVVDLEEVKARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELY 62
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQ 129
G +RE +ELNASD+RGI+V+R ++K FA+ T P GK K+V+LDEAD+MT+ AQQ
Sbjct: 63 GEYWRENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQ 119
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRR MEIY+ +TRF L N S IIEPIQSR ++RFS L E + +RL + + E V
Sbjct: 120 ALRRIMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFARLRYIAENEGVK 179
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
+ LEAI GDMR+A+N LQ + + V +E V K P ++ + ++
Sbjct: 180 VSDDALEAIYEFTQGDMRRAINALQIAATVSKAVTEEVVAKALGMVSPRLLRETLYEAVK 239
Query: 250 GKFDDACSGLKQLY----DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
G F A + Q+Y D G +II + R + ++ E++K E AH I
Sbjct: 240 GSFGKAAT---QIYGFVADGGVGELEIIKQIHREMLRLDVQEYVKPEIAYIIAEAHYAIL 296
Query: 306 DGVGSYLQLCGLLAKLSIVRETAKAV 331
G Q+ G LAK VR K+V
Sbjct: 297 RGAHGLTQIYGALAK---VRRLLKSV 319
>gi|16082630|ref|NP_394950.1| replication factor C small subunit [Thermoplasma acidophilum DSM
1728]
gi|73920752|sp|Q9HI47.2|RFCS_THEAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
Length = 318
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 190/311 (61%), Gaps = 7/311 (2%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W EKYRP + +I G + + +L +P+L+ AG GTGKT++ +ALA EL G +
Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFGDS 64
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++E ++E+NAS++ GIDV+RNKIK A+ K + P G K++ LDEAD +TA AQ ALRRT
Sbjct: 65 WKENMVEMNASNENGIDVIRNKIKDIARIKPSNPLG-FKILFLDEADQLTAEAQAALRRT 123
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
MEIYS +TRF +CN SSKII PIQSR ++RF + DE I +L + + E E
Sbjct: 124 MEIYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYISRKLQEIAKNEGFQIDEES 183
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
+ A++ + GDMR+A+N LQA Y+ ++ + ++++ P ++ M+ + G FD+
Sbjct: 184 MHALVEVSAGDMRKAINVLQAVYTSGE-ISPKKIYEIIGYASPEKIQKMISRAINGLFDE 242
Query: 255 A---CSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A G+ +YD G S DI+ +L +++ ++ K+E +K A RI +G
Sbjct: 243 AREIVDGM-LIYD-GLSGIDIVRSLHSYVRSSMISPKQKIEIIKALADAEFRIVEGSNDR 300
Query: 312 LQLCGLLAKLS 322
+QL L+AKL+
Sbjct: 301 IQLDALIAKLA 311
>gi|321458433|gb|EFX69502.1| hypothetical protein DAPPUDRAFT_202808 [Daphnia pulex]
Length = 330
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 121/320 (37%), Positives = 187/320 (58%), Gaps = 3/320 (0%)
Query: 8 SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
+S+ ++PWVEKYRP ++ D++ + D ++ + + +P+L+ GPPGTGKT++ILA A
Sbjct: 2 TSSGNLPWVEKYRPKQLDDLISHQDIISTIRKFINENRLPHLLFYGPPGTGKTSTILACA 61
Query: 68 HELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG 126
EL P + V+ELNASDDRGI+VVRN+I FA + G K+++LDEAD+MT
Sbjct: 62 KELYTPQQFNSMVLELNASDDRGINVVRNQIMSFASTRSIFKSG-FKLIILDEADAMTND 120
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQ ALRR +E ++ + RF L CN SKII IQSRC RF L ++IL R+ V++EE
Sbjct: 121 AQNALRRVIEKFTENVRFCLICNYMSKIIPAIQSRCTRFRFGPLKSDQILPRMNYVIEEE 180
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
K+ +G +A++ A GDMR+ +N LQ+T F VN+++V+ P + N+V
Sbjct: 181 KIKVTEDGRQALLSLAHGDMRRVINILQSTSMAFDEVNEDHVYTCVGHPLKSDIANVVSW 240
Query: 247 VLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
+L A S ++ L G + DI+T + E ++++ +++ R+
Sbjct: 241 MLNEDLTSAYSKIRDLQTFKGLALQDILTETHLYVHKIEFPPNVRVFLLEKMADVEYRLS 300
Query: 306 DGVGSYLQLCGLLAKLSIVR 325
G LQL LLA ++
Sbjct: 301 AGCSEKLQLGSLLAAFDSIK 320
>gi|288560386|ref|YP_003423872.1| replication factor C small subunit RfcS [Methanobrevibacter
ruminantium M1]
gi|288543096|gb|ADC46980.1| replication factor C small subunit RfcS [Methanobrevibacter
ruminantium M1]
Length = 314
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 126/313 (40%), Positives = 183/313 (58%), Gaps = 8/313 (2%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + DIVG V L G+MPNL+ GP G GKTTS LAL +LG
Sbjct: 4 PWVEKYRPQTLDDIVGQKHIVESLKKYVDQGSMPNLMFTGPAGVGKTTSALALVKAILGD 63
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
+R+ +ELNASD RGI+ VR IK F + K P +++ LDE D+MT AQ ALRR
Sbjct: 64 YWRQNFLELNASDARGIETVRTNIKNFCRLKPVGAP--FRIIFLDEVDNMTKDAQHALRR 121
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
ME+Y+ + F L+CN SSKII+PIQSRCAI RF+ + EEI RL + + E Y +
Sbjct: 122 EMEMYTKTCSFILSCNYSSKIIDPIQSRCAIFRFAPIKAEEIADRLKYIAEAEGCEYEEK 181
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
+E I+ +GDMR+++N LQ+ S + +++V++V + P +K MV L GKF
Sbjct: 182 AIETIVLFGEGDMRKSVNMLQSAASTGN-ITEDHVYEVVTKARPQEIKEMVDAALRGKFM 240
Query: 254 DACSGLKQLYDL-GYSPTDIITTLFRIIK----NYEMAEHLKLEFMKEAGFAHMRICDGV 308
++ + L+ + L G S D++ +++ + + +M+ + +E + RI +G
Sbjct: 241 ESRNILRDVMILQGTSGEDMVNQIYQDVAGRVMDGKMSGEVYMELIGAIADTDFRIREGA 300
Query: 309 GSYLQLCGLLAKL 321
+QL LLAK
Sbjct: 301 NPRIQLEALLAKF 313
>gi|260791339|ref|XP_002590697.1| hypothetical protein BRAFLDRAFT_125553 [Branchiostoma floridae]
gi|229275893|gb|EEN46708.1| hypothetical protein BRAFLDRAFT_125553 [Branchiostoma floridae]
Length = 329
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 126/326 (38%), Positives = 187/326 (57%), Gaps = 3/326 (0%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
S ++PWVEKYRP ++ +++ + D ++ + + +P+L+ GPPGTGKT++IL
Sbjct: 2 SGGGEHRNLPWVEKYRPKEMTELISHQDIISTIQRFLDEDRLPHLLFYGPPGTGKTSTIL 61
Query: 65 ALAHELLGP-NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM 123
A A L + V+ELNASDDRGI +VR + FA + G K+V+LDEAD+M
Sbjct: 62 ACARRLYADREFNSMVLELNASDDRGIGIVRGPVLQFASTRTIFKRG-FKLVILDEADAM 120
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T AQ ALRR ME ++ +TRF L CN SKII IQSRC RF L +++L RL V+
Sbjct: 121 TGDAQNALRRVMEKFTENTRFCLICNYLSKIIPAIQSRCTRFRFGPLGVDQMLPRLEHVI 180
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
QEEKV +G +AI+ A+GDMR+ LN LQ+T V+++NV+ V QP + N+
Sbjct: 181 QEEKVDVTDDGKKAILQLANGDMRRVLNILQSTSMAHDVVDEDNVYLVTGQPLRSDIANI 240
Query: 244 VRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHM 302
V +L F A + + QL L G + DI+T + + + +K+ +++
Sbjct: 241 VNWMLNENFTTAYNNIFQLKVLKGLALQDILTEVHLFVHRIDFPMAVKMVLLQKMADVEY 300
Query: 303 RICDGVGSYLQLCGLLAKLSIVRETA 328
R+ G LQL ++A +VR A
Sbjct: 301 RLSAGTNEKLQLSSVIAAFQVVRNVA 326
>gi|169849253|ref|XP_001831330.1| DNA replication factor [Coprinopsis cinerea okayama7#130]
gi|116507598|gb|EAU90493.1| DNA replication factor [Coprinopsis cinerea okayama7#130]
Length = 347
Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 113/309 (36%), Positives = 183/309 (59%), Gaps = 2/309 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D+V + D + +P+L+ GPPGTGKT++ILA+A +
Sbjct: 27 NLPWVEKYRPVSLEDVVSHQDITTTIDRFIEKNRLPHLLFYGPPGTGKTSTILAVARRIY 86
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G +Y++ ++ELNASDDRGIDVVR ++K FA+ + G +K+++LDEAD MT AQ AL
Sbjct: 87 GSDYKKQILELNASDDRGIDVVREQVKQFAETRTLFSKG-YKLIILDEADMMTQQAQAAL 145
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR +E Y+ + RF + CN +KI IQSRC RFS L E+ ++ VV+ E V
Sbjct: 146 RRVIEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPIAEVEKQVNRVVEAENVQLT 205
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
PEG +A++ + GDMR+ALN LQA ++ + +++ V+ PHP ++ +V ++L +
Sbjct: 206 PEGKQALLKLSKGDMRRALNVLQACHAAYDVISESEVYNCTGHPHPQDIEAIVNSMLSDE 265
Query: 252 FDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
F + + +L + G + D+I + ++ E+ + ++ + R+ G
Sbjct: 266 FTTSYQMISKLKTERGLALQDLIAGAYEYLETIEIKPNARVYVLDLLATTEHRLSTGGNE 325
Query: 311 YLQLCGLLA 319
+QL LL+
Sbjct: 326 KMQLTALLS 334
>gi|10640840|emb|CAC12618.1| probable replication factor C, 40 KD subunit [Thermoplasma
acidophilum]
Length = 330
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 190/311 (61%), Gaps = 7/311 (2%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W EKYRP + +I G + + +L +P+L+ AG GTGKT++ +ALA EL G +
Sbjct: 17 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFGDS 76
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++E ++E+NAS++ GIDV+RNKIK A+ K + P G K++ LDEAD +TA AQ ALRRT
Sbjct: 77 WKENMVEMNASNENGIDVIRNKIKDIARIKPSNPLG-FKILFLDEADQLTAEAQAALRRT 135
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
MEIYS +TRF +CN SSKII PIQSR ++RF + DE I +L + + E E
Sbjct: 136 MEIYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYISRKLQEIAKNEGFQIDEES 195
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
+ A++ + GDMR+A+N LQA Y+ ++ + ++++ P ++ M+ + G FD+
Sbjct: 196 MHALVEVSAGDMRKAINVLQAVYTSGE-ISPKKIYEIIGYASPEKIQKMISRAINGLFDE 254
Query: 255 A---CSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A G+ +YD G S DI+ +L +++ ++ K+E +K A RI +G
Sbjct: 255 AREIVDGM-LIYD-GLSGIDIVRSLHSYVRSSMISPKQKIEIIKALADAEFRIVEGSNDR 312
Query: 312 LQLCGLLAKLS 322
+QL L+AKL+
Sbjct: 313 IQLDALIAKLA 323
>gi|424812315|ref|ZP_18237555.1| replication factor C small subunit [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756537|gb|EGQ40120.1| replication factor C small subunit [Candidatus Nanosalinarum sp.
J07AB56]
Length = 317
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 118/314 (37%), Positives = 189/314 (60%), Gaps = 4/314 (1%)
Query: 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH 68
S DI W EKYRP + ++VG D V RL +G +P+L+ +GP GTGKTTS +++A
Sbjct: 2 SEIDI-WTEKYRPDTLDEVVGQQDIVERLQAFVEEGQIPHLMFSGPAGTGKTTSAVSVAK 60
Query: 69 ELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQ 128
+L G +R+ E NASD+RGIDVVR++IK FA+ K ++K++ LDEAD++T AQ
Sbjct: 61 DLYGSEWRQNFKETNASDERGIDVVRDQIKSFARTKPV--NAEYKMIFLDEADALTTDAQ 118
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKV 188
QALRRTME +S++ RF L+CN SSKII+PIQSRCA+ RF+RL +E++ + V + E
Sbjct: 119 QALRRTMEQFSDNARFVLSCNYSSKIIDPIQSRCALFRFNRLEEEQVRRYITRVAEGEGF 178
Query: 189 PYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVL 248
E ++ ++ + GD+R+ N LQ + +++++ P ++ +++ L
Sbjct: 179 RISEEAIQGVMRVSGGDLRRTTNVLQTVALRKDEIEEDDIYTAAASLRPQEIREILKLAL 238
Query: 249 EGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDG 307
F DA L +L D G D+I + R + + ++ + K+E ++ G RI +G
Sbjct: 239 NQDFIDAREKLSELMIDRGLDGKDVIDAVHRELFDLDIPDEAKMEMVEFLGEYQFRIAEG 298
Query: 308 VGSYLQLCGLLAKL 321
+ +Q+ +LA +
Sbjct: 299 GSNDIQIEAMLASI 312
>gi|402223757|gb|EJU03821.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 356
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 116/313 (37%), Positives = 183/313 (58%), Gaps = 2/313 (0%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
A ++PWVEKYRP + D+V + D + + +P+L+ GPPGTGKT++ILA+A +
Sbjct: 36 ADNLPWVEKYRPATLDDVVSHKDITSTIEKFIEQNRLPHLLFYGPPGTGKTSTILAVARK 95
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
+ G YR+ ++ELNASDDRGIDVVR +IK FA+ + G K++VLDEAD MT AQ
Sbjct: 96 IYGNEYRKQILELNASDDRGIDVVREQIKNFAEMRTLYSKG-FKLIVLDEADMMTQAAQS 154
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRR +E Y+ + RF + CN +KII IQSRC RFS L EI R+ VV+ E V
Sbjct: 155 ALRRVIEQYTRNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPQTEIEKRIKQVVEAEHVN 214
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
+G +A++ + GDMR+ALN LQA ++ + ++ ++ PHP ++ +V +++
Sbjct: 215 LTEDGKQALLKLSKGDMRRALNILQACHAAYDRTDETAIYNCTGNPHPSDIEAIVTSMMN 274
Query: 250 GKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGV 308
+F + + ++ D G + D+I + +++ E+ ++ + R+ G
Sbjct: 275 DEFSTSYQKVSRMKTDKGLALQDLIAGTYEYLESLELPPQTRVYLLDHLATTEHRLSTGG 334
Query: 309 GSYLQLCGLLAKL 321
+QL LL +
Sbjct: 335 SEKVQLTALLGAI 347
>gi|432116793|gb|ELK37418.1| Replication factor C subunit 5 [Myotis davidii]
Length = 341
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 122/323 (37%), Positives = 186/323 (57%), Gaps = 3/323 (0%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
S+S ++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA
Sbjct: 14 STSKIRNLPWVEKYRPQTLSDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILA 73
Query: 66 LAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
A +L + V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT
Sbjct: 74 CAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMT 132
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL V++
Sbjct: 133 QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIE 192
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EEKV +G++A+I + GDMR+ALN LQ+T F V +E V+ P + N++
Sbjct: 193 EEKVDVSEDGMKALITLSSGDMRRALNILQSTSMAFSKVTEETVYTCTGHPLKSDIANIL 252
Query: 245 RNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
+L F A + +L L G + DI+T + + + +++ + + R
Sbjct: 253 DWMLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYR 312
Query: 304 ICDGVGSYLQLCGLLAKLSIVRE 326
+ G +QL L+A + R+
Sbjct: 313 LSAGTSEKIQLSSLIAAFQVTRD 335
>gi|336368487|gb|EGN96830.1| hypothetical protein SERLA73DRAFT_111563 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381281|gb|EGO22433.1| hypothetical protein SERLADRAFT_357265 [Serpula lacrymans var.
lacrymans S7.9]
Length = 354
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 177/308 (57%), Gaps = 2/308 (0%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + D+V + D + +P+L+ GPPGTGKT++ILA+A + G
Sbjct: 37 LPWVEKYRPVTLDDVVSHKDITTTIEKFIDKNRLPHLLFYGPPGTGKTSTILAVARRIYG 96
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
P YR+ ++ELNASDDRGIDVVR +IK FA+ + G K+++LDEAD MT AQ ALR
Sbjct: 97 PEYRKQILELNASDDRGIDVVREQIKQFAETRTLFARG-FKLIILDEADMMTQQAQAALR 155
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R +E Y+ + RF + CN +KI IQSRC RFS L E+ R+ V++ E V
Sbjct: 156 RVIEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPIVEVEKRIGTVIEAEHVKLTE 215
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+G +A++ + GDMR+ALN LQA ++ + V + ++ PHP ++N+V ++L +F
Sbjct: 216 DGKKALLKLSKGDMRRALNVLQACHAAYDSVGETEIYNCTGNPHPSDIENIVNSMLSDEF 275
Query: 253 DDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
+ + + + G + D+I+ + I+ E ++ + R+ G
Sbjct: 276 TTSYQMISTMKTERGLALQDLISGAYEYIETIEFKPQARIYLLDYLATTEHRLSAGASEK 335
Query: 312 LQLCGLLA 319
+QL +L
Sbjct: 336 IQLSAMLG 343
>gi|51467970|ref|NP_001003862.1| replication factor C subunit 5 [Danio rerio]
gi|49618977|gb|AAT68073.1| replication factor C subunit RFC5 [Danio rerio]
Length = 334
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 123/329 (37%), Positives = 191/329 (58%), Gaps = 4/329 (1%)
Query: 1 MASSSSSS-SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
MAS+S + A ++PWVEKYRP + D++ + D ++ + + +P+L+ GPPGTGK
Sbjct: 1 MASTSKTQPQARNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGK 60
Query: 60 TTSILALAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLD 118
T++ILA A +L + V+ELNASDDRGIDVVR I FA + G K+V+LD
Sbjct: 61 TSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKG-FKLVILD 119
Query: 119 EADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSR 178
EAD+MT AQ ALRR +E ++ +TRF L CN SKII +QSRC RF LS +++ R
Sbjct: 120 EADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPR 179
Query: 179 LMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPL 238
L V+Q+E + P+G++AI+ + GDMR++LN LQ+T+ + V +E V+ P
Sbjct: 180 LEHVIQQESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAYGKVTEETVYTCTGHPLRS 239
Query: 239 HVKNMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
+ N++ L F A + + +L L G + DI+T + +I + +++ + +
Sbjct: 240 DIANILDWALNKDFTTAYNQILELKTLKGLALHDILTEVHLLIHRVDFPPSIRMGLLIKL 299
Query: 298 GFAHMRICDGVGSYLQLCGLLAKLSIVRE 326
R+ G +QL ++A VR+
Sbjct: 300 ADIEYRLASGTSEKIQLSSMVAAFQAVRD 328
>gi|409041157|gb|EKM50643.1| hypothetical protein PHACADRAFT_152803 [Phanerochaete carnosa
HHB-10118-sp]
Length = 358
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/309 (36%), Positives = 178/309 (57%), Gaps = 2/309 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D+V + D + + +P+L+ GPPGTGKT++ILA+A +
Sbjct: 39 NLPWVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIY 98
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G +YR+ ++ELNASDDRGIDVVR +IK FA+ + G +K+++LDEAD MT AQ AL
Sbjct: 99 GKDYRKQILELNASDDRGIDVVREQIKNFAETRTLFSKG-YKLIILDEADMMTTAAQAAL 157
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR +E Y+ + RF + CN +KII +QSRC RFS L E+ R+ V++ E V
Sbjct: 158 RRVIEQYTKNVRFCIICNYVNKIIPAVQSRCTRFRFSPLPVPEVERRINGVIETEGVKIT 217
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+G +A++ + GDMR+ALN LQA ++ + + V+ P P + N+V ++ +
Sbjct: 218 GDGRKALLKLSKGDMRRALNVLQACHAAYDETGEREVYHCTGTPDPADIANIVNSMFSDE 277
Query: 252 FDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
F + + L D G + D++ + + E+ H ++ + A R+ G
Sbjct: 278 FTTSYKMISSLKTDRGLALQDLLNGAYEYVDELELKPHARIYLLDYFATAEYRLSAGASE 337
Query: 311 YLQLCGLLA 319
+QL LL
Sbjct: 338 KIQLTALLG 346
>gi|374628354|ref|ZP_09700739.1| replication factor C small subunit [Methanoplanus limicola DSM
2279]
gi|373906467|gb|EHQ34571.1| replication factor C small subunit [Methanoplanus limicola DSM
2279]
Length = 325
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 186/310 (60%), Gaps = 7/310 (2%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ D+VG + V+RL + ++P+L+ G G GKTTS +ALA E G +
Sbjct: 8 WIEKYRPKRLDDVVGQKEIVSRLKSYVKTKSLPHLLFTGTAGIGKTTSAVALAKEFYGEH 67
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGAQQALR 132
+ E+NASD+RGIDVVRN+IK FA+ T P G + K++ LDEAD++T AQ ALR
Sbjct: 68 WNVNFREMNASDERGIDVVRNQIKQFAR---TAPIGGAEFKILFLDEADALTNDAQAALR 124
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME Y+ + RF L+CN SSKII+PIQSRCAI RF L E I LM + + E +
Sbjct: 125 RTMENYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAITEELMHIAENEGLTLSE 184
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+ + AII+ + GDMR+A+N LQ + +E +F++ P + ++ ++E F
Sbjct: 185 DAISAIIYVSAGDMRKAINALQGAAIIDPEIKEEMIFEITSTAKPDEILELLEIIIEADF 244
Query: 253 DDACSGLKQL-YDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
D A L +L G +P ++I L+R I+ + + LKLE + G RI +G
Sbjct: 245 DGAGHKLDELTVKRGIAPNELINQLYRTIVSHKTIGRELKLEMISHLGETDFRISEGSDP 304
Query: 311 YLQLCGLLAK 320
+Q+ L+A+
Sbjct: 305 GIQMEALIAR 314
>gi|449548327|gb|EMD39294.1| hypothetical protein CERSUDRAFT_152406 [Ceriporiopsis subvermispora
B]
Length = 357
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 117/321 (36%), Positives = 184/321 (57%), Gaps = 3/321 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D+V + D + + +P+L+ GPPGTGKT++ILA+A +
Sbjct: 38 NLPWVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIY 97
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G YR+ ++ELNASDDRGIDVVR +IK FA+ + G K+++LDEAD MT AQ AL
Sbjct: 98 GSEYRKQILELNASDDRGIDVVREQIKNFAETRTLFSKG-FKLIILDEADMMTTAAQAAL 156
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR +E Y+ + RF + CN +KI+ IQSRC RFS L E+ RL V++ E V
Sbjct: 157 RRVIEQYTKNVRFCIICNYVNKIVPAIQSRCTRFRFSPLPISEVEKRLQKVIESEGVKLT 216
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+G +A++ + GDMR+ALN LQA ++ + + + ++ PHP ++ +V ++L
Sbjct: 217 DDGKKALLKLSKGDMRRALNVLQACHAAYDLIGEAEIYNCTGNPHPSDIETVVNSMLSDD 276
Query: 252 FDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
F + + L + G + D+I ++ I+ + + ++ + R+ G
Sbjct: 277 FTTSHKMISALKVERGLALPDLINGVYEYIETVDFKPNARIYLLDILATIEHRLSTGANE 336
Query: 311 YLQLCGLLAKL-SIVRETAKA 330
+QL LL + V TAK+
Sbjct: 337 KIQLTALLGAFKNAVELTAKS 357
>gi|63102390|gb|AAH95222.1| Rfc5 protein [Danio rerio]
gi|182889646|gb|AAI65456.1| Replication factor C (activator 1) 5 [Danio rerio]
Length = 334
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/329 (37%), Positives = 192/329 (58%), Gaps = 4/329 (1%)
Query: 1 MASSSSSS-SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
MAS+S + + ++PWVEKYRP + D++ + D ++ + + +P+L+ GPPGTGK
Sbjct: 1 MASTSKTQPQSRNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGK 60
Query: 60 TTSILALAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLD 118
T++ILA A +L + V+ELNASDDRGIDVVR I FA + G K+V+LD
Sbjct: 61 TSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKG-FKLVILD 119
Query: 119 EADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSR 178
EAD+MT AQ ALRR +E ++ +TRF L CN SKII +QSRC RF LS +++ R
Sbjct: 120 EADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPR 179
Query: 179 LMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPL 238
L V+Q+E + P+G++AI+ + GDMR++LN LQ+T+ + V +E V+ P
Sbjct: 180 LEHVIQQESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAYGKVTEETVYTCTGHPLRS 239
Query: 239 HVKNMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
+ N++ L F A + + +L L G + DI+T + +I+ + +++ + +
Sbjct: 240 DIANILDWALNKDFTTAYNQILELKTLKGLALHDILTEVHLLIRRVDFPPSIRMGLLIKL 299
Query: 298 GFAHMRICDGVGSYLQLCGLLAKLSIVRE 326
R+ G +QL ++A VR+
Sbjct: 300 ADIEYRLASGTSEKIQLSSMVAAFQAVRD 328
>gi|84489225|ref|YP_447457.1| replication factor C small subunit [Methanosphaera stadtmanae DSM
3091]
gi|110287813|sp|Q2NH89.1|RFCS_METST RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|84372544|gb|ABC56814.1| RfcS [Methanosphaera stadtmanae DSM 3091]
Length = 321
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 131/323 (40%), Positives = 187/323 (57%), Gaps = 13/323 (4%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + D+VG V RL + ++PN++ G G GKTT LALA LLG
Sbjct: 4 PWVEKYRPQTLDDVVGQEQIVGRLKRYVEEKSLPNIMFTGFAGVGKTTCALALAKSLLGE 63
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
+++ +ELNASD RGID VRN+IK F + K P +++ LDE D+MT AQQALRR
Sbjct: 64 YWQQNFLELNASDARGIDTVRNEIKSFCKLKAVGAP--FRIIFLDEVDNMTKDAQQALRR 121
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
ME+Y+ ++ F L+CN SSKII+PIQSRCAI RFS + I+ RL + EE +
Sbjct: 122 EMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFSPIKAANIIKRLKYIASEEGIEAEQS 181
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
LE I++ GDMR+++N LQA+ + V +E V+ V + P V+ ++ L F
Sbjct: 182 ALENIVYFTQGDMRKSINILQASTTTENTVTEEAVYDVISRAKPKDVRKIINKALNHDFM 241
Query: 254 DACSGLKQLYDL-GYSPTDIITTLFRIIKNYEM------AEHLKL-EFMKEAGFAHMRIC 305
+A L+ + + G S D+IT ++ + E +KL E+M E + RI
Sbjct: 242 EARDLLRDIMIIEGVSGDDLITQFYQEVAQMTQEELIPEVEFIKLMEYMSECDY---RIR 298
Query: 306 DGVGSYLQLCGLLAKLSIVRETA 328
+G LQL LL+K +V++ A
Sbjct: 299 EGSNPRLQLEALLSKFLLVKQDA 321
>gi|327311517|ref|YP_004338414.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
gi|326947996|gb|AEA13102.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
Length = 328
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 128/320 (40%), Positives = 186/320 (58%), Gaps = 6/320 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W EKYRP ++V + ARL + GNMP+L+ GPPGTGKTT L LA EL G
Sbjct: 8 WFEKYRPRSFEEVVDLEEVKARLKEFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGDA 67
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQALR 132
+RE +ELNASD+RGI+V+R ++K FA+ T P GK K+V+LDEAD+MT+ AQQALR
Sbjct: 68 WRENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQALR 124
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R ME+Y+N+TRF L N S+II+PI SRCA+ RF + E + RL + ++E +
Sbjct: 125 RIMEMYANTTRFILLANYVSRIIDPIISRCAVFRFPPMPKELMAKRLAYIAKQEGITVTE 184
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+G++AI + GDMR+A+N LQ + R V++E+V V P + ++ L G
Sbjct: 185 DGIDAIYEISQGDMRRAINLLQMAAAASRSVDKESVAAVASAARPSEILDVFNTALSGDV 244
Query: 253 DDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
+ A L+ L Y G + D + L R + ++ + K+ + R+ +G
Sbjct: 245 EKAREKLRDLMYMKGIAGVDFLRALQRELPRIQLDDETKVAVAELLSDVDYRLAEGSDEE 304
Query: 312 LQLCGLLAKLSIVRETAKAV 331
LQL +L KL+ + KA
Sbjct: 305 LQLTYMLVKLAAIGSKGKAT 324
>gi|443714846|gb|ELU07083.1| hypothetical protein CAPTEDRAFT_164264 [Capitella teleta]
Length = 333
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 113/323 (34%), Positives = 192/323 (59%), Gaps = 3/323 (0%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
S + ++PWVEKYRP K+ D++ + D ++ +G ++ +P+L+ GPPGTGKTT+ILA
Sbjct: 5 SELESRNLPWVEKYRPQKLDDLISHKDIISTIGRFVKEERLPHLLFYGPPGTGKTTTILA 64
Query: 66 LAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
+A ++ P + V+ELNASDDRGI +VR++I FA + G K+V+LDEAD+MT
Sbjct: 65 VAKQIYAPKEFNSMVLELNASDDRGIGIVRDRILSFASTRTLFKSG-FKLVILDEADAMT 123
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALRR +E ++ +TRF + CN SKII +QSRC RF L E++ RL V++
Sbjct: 124 NDAQNALRRVIEKFTENTRFCIICNYLSKIIPALQSRCTRFRFGPLLPEQMKPRLQYVIE 183
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
+EK+ +G++A++ A+GDMR++LN LQ+ F V + V+ P ++++V
Sbjct: 184 QEKLTVSEDGMDALVTLANGDMRRSLNILQSCSMAFDEVTEHTVYTCVGHPLRSDIEHIV 243
Query: 245 RNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
+ +L F +A + ++ G + D++T + + + ++++ +++ R
Sbjct: 244 KWMLNESFTEAYKNILEMQTAKGLALNDVLTEVHHYVHRIDFPMNVRIHLLEKMADVEHR 303
Query: 304 ICDGVGSYLQLCGLLAKLSIVRE 326
+ G +QL L+A + R+
Sbjct: 304 LASGTSESIQLSSLVAAFQVARD 326
>gi|193676219|ref|XP_001942989.1| PREDICTED: replication factor C subunit 5-like [Acyrthosiphon
pisum]
Length = 329
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 190/323 (58%), Gaps = 9/323 (2%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D++ + D + +G ++ +P+L+ GPPGTGKT++ILA A +L
Sbjct: 7 NLPWVEKYRPNTLDDLISHEDIIQTIGKFIKEDQLPHLLFYGPPGTGKTSTILACAKQLY 66
Query: 72 GP-NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
P +R V+ELNASDDRGI+VVR ++ FA + G K+++LDEAD+MT AQ A
Sbjct: 67 TPAQFRSMVLELNASDDRGINVVRGQVLNFASTRTIFKSG-FKLIILDEADAMTNDAQNA 125
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++++ RF L CN SKII +QSRC RF L ++I+ RL VV++EKV
Sbjct: 126 LRRIIEKFTDNVRFCLICNYLSKIIPALQSRCTRFRFGPLDSKQIMPRLEYVVEQEKVKV 185
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G +A+I A GDMR+ LN LQ+ + F VN+++V+ P + N+++ +L
Sbjct: 186 TEDGKKALIDLAQGDMRKVLNILQSAATAFPEVNEDSVYTCVGHPLKSDIMNILKWLLN- 244
Query: 251 KFDDACSGLKQLYDL----GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICD 306
DD + K++ +L G + DI+T L + ++ +E + E +R+
Sbjct: 245 --DDFSTTFKKIQELKIQKGLALQDILTELHTFLYRLDLPPDSLIEILTEMADIEIRLNG 302
Query: 307 GVGSYLQLCGLLAKLSIVRETAK 329
G + L L++ ++R K
Sbjct: 303 GTSEKIHLGSLISAFHMIRSKLK 325
>gi|47214930|emb|CAG01152.1| unnamed protein product [Tetraodon nigroviridis]
Length = 357
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 129/326 (39%), Positives = 190/326 (58%), Gaps = 11/326 (3%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A SSS A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 22 AGSSSEKKAKAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 81
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKV--TLPPGK----HKV 114
+ILA A EL GP YR+ V+ELNASD+RGI V+R K+K FAQ V T P GK K+
Sbjct: 82 TILAAARELYGPVLYRQRVLELNASDERGIQVIREKVKTFAQLTVAGTRPDGKPCPPFKI 141
Query: 115 VVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEE 174
++LDEADSMT AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF L ++
Sbjct: 142 IILDEADSMTPPAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLDNQV 201
Query: 175 ILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQ--ATYSGFRFVNQENVFKVC 232
RL+ + ++E + Y E + A++ ++GD+R+A+ LQ A S + +++ + ++
Sbjct: 202 QEERLLAICEKENLKYSGESVSALVRVSEGDLRKAITFLQSAARLSVDKEISERTITEIA 261
Query: 233 D-QPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKL 291
PH + + +++ G F+ ++ L D GY+ T I++ L I ++ + K
Sbjct: 262 GVVPHKM-IDSLLHICFRGTFEKLEVEVRNLVDEGYAATQILSQLHESIIEKDLGDKQKS 320
Query: 292 EFMKEAGFAHMRICDGVGSYLQLCGL 317
++ + DG YLQ+ L
Sbjct: 321 AITEKMAVVSKCLSDGADEYLQMLSL 346
>gi|348513512|ref|XP_003444286.1| PREDICTED: replication factor C subunit 4-like [Oreochromis
niloticus]
Length = 357
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 127/324 (39%), Positives = 189/324 (58%), Gaps = 9/324 (2%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
S+ A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT++IL
Sbjct: 25 SAEKKAKAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTIL 84
Query: 65 ALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKV--TLPPGKH----KVVVL 117
A A EL GP YR+ V+ELNASD+RGI VVR+K+K FAQ V T P GK K+++L
Sbjct: 85 AAARELYGPELYRQRVLELNASDERGIQVVRDKVKNFAQLTVAGTRPDGKSCPPFKIIIL 144
Query: 118 DEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILS 177
DEADSMTA AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF L+++
Sbjct: 145 DEADSMTAPAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLANQIQEE 204
Query: 178 RLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQ--ATYSGFRFVNQENVFKVCDQP 235
RL+ + ++E + Y E + A++ ++GD+R+A+ LQ A + + + V ++
Sbjct: 205 RLLEICEKENLKYTKESIAALVRVSEGDLRKAITFLQSAARLNVDKEITDCAVIEIAGVV 264
Query: 236 HPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMK 295
+ N+++ G F+ ++ + D GY+ T I+T L + ++++ K +
Sbjct: 265 PDKMIDNLLQICFRGTFEKLEVAVRNMVDEGYAATQILTQLHECVIEQDLSDKQKSTITE 324
Query: 296 EAGFAHMRICDGVGSYLQLCGLLA 319
+ + DG YLQL L +
Sbjct: 325 KMAVVCKCLSDGADEYLQLLSLCS 348
>gi|346472797|gb|AEO36243.1| hypothetical protein [Amblyomma maculatum]
Length = 327
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 188/327 (57%), Gaps = 3/327 (0%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
S + ++PWVEKYRP K+ D++ + D ++ +G ++ +P+L+ GPPGTGKT++IL
Sbjct: 2 SGKEATSNLPWVEKYRPQKLDDLIAHEDIISTIGRFIKEDRLPHLLFYGPPGTGKTSTIL 61
Query: 65 ALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM 123
A A ++ P + V+ELNASDDRGI +VR +I FA K G K++VLDEAD+M
Sbjct: 62 ACAQQIYSPKEFTSKVLELNASDDRGIGIVRGEILSFASTKTIFNTG-FKLIVLDEADAM 120
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T AQ ALRR +E ++ + RF L CN SKII +QSRC RF LS ++ R+ V+
Sbjct: 121 TNDAQNALRRVIEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLSTAQMSPRIDHVI 180
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
+E++ +G +A++ A GDMR+ALN LQ+T F VN+ NV+ QP + ++
Sbjct: 181 TQERLTVTADGKKALMDLAQGDMRKALNILQSTSMAFSEVNETNVYLCVGQPLKEDISDI 240
Query: 244 VRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHM 302
V +L F S + +L G + D++T + + E+ + +K+ + +
Sbjct: 241 VSTLLNEDFTYCYSHISKLKVGKGLALQDVLTQVHLYVHRIELPDQVKMRLIDKMAEIEY 300
Query: 303 RICDGVGSYLQLCGLLAKLSIVRETAK 329
R+ G +QL L++ + R+ K
Sbjct: 301 RLAAGTSEKIQLSSLISAFQVARQMVK 327
>gi|149720613|ref|XP_001490846.1| PREDICTED: replication factor C subunit 5 [Equus caballus]
Length = 340
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 121/325 (37%), Positives = 188/325 (57%), Gaps = 3/325 (0%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
S++++ ++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++I
Sbjct: 11 SAATAKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTI 70
Query: 64 LALAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
LA A +L + V+ELNASDDRGID+VR I FA + G K+V+LDEAD+
Sbjct: 71 LACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADA 129
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT AQ ALRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL V
Sbjct: 130 MTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHV 189
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
V+EEKV +G++A++ + GDMR+ALN LQ+T F V +E V+ P + N
Sbjct: 190 VEEEKVAISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIAN 249
Query: 243 MVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAH 301
++ +L F A + +L L G + DI+T + + + +++ + +
Sbjct: 250 ILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPTSVRIHLLTKMADIE 309
Query: 302 MRICDGVGSYLQLCGLLAKLSIVRE 326
R+ G +QL L+A + R+
Sbjct: 310 YRLSVGTNEKIQLSSLIAAFQVTRD 334
>gi|13542322|ref|NP_112010.1| replication factor C small subunit [Thermoplasma volcanium GSS1]
gi|73920753|sp|Q977Z9.2|RFCS_THEVO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
Length = 318
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 187/309 (60%), Gaps = 3/309 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W EKYRP + +I G + + +L +P+L+ AG GTGKT++ +ALA EL G +
Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFGES 64
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++E +E+NAS++ GIDV+RNKIK A+ + + P G K++ LDEAD +TA AQ ALRRT
Sbjct: 65 WKENFIEMNASNENGIDVIRNKIKDIARIRPSNPLG-FKILFLDEADQLTAEAQAALRRT 123
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME+YS +TRF ACN SSKII PIQSR ++RF + DE I +L + + E E
Sbjct: 124 MEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAKNEGFTIDDES 183
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
+EA++ + GDMR+A+N LQA Y+ ++ + ++++ P V ++ + G FD+
Sbjct: 184 MEAMVEVSGGDMRKAINVLQAVYTSGE-ISPKKIYEIIGYASPESVNKLISRAINGLFDE 242
Query: 255 ACSGL-KQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + K + + G S DI+ ++ I++ + K+E +K A RI +G +Q
Sbjct: 243 ARQIVDKMMIEDGLSGIDIVKSVHSIVRASVVPPKQKIEIIKALADAEFRIVEGSNDRIQ 302
Query: 314 LCGLLAKLS 322
L L+A+++
Sbjct: 303 LDALIARIA 311
>gi|392565350|gb|EIW58527.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 353
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 120/334 (35%), Positives = 191/334 (57%), Gaps = 6/334 (1%)
Query: 3 SSSSSSSAYDI---PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
++ SAYD+ PWVEKYRP + D+V + D + + +P+L+ GPPGTGK
Sbjct: 21 ATQHEDSAYDVENLPWVEKYRPVTLDDVVSHHDITSTIVKFIEKNRLPHLLFYGPPGTGK 80
Query: 60 TTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDE 119
T++ILA+A + G +YR+ ++ELNASDDRGIDVVR +IK FA+ + G K+++LDE
Sbjct: 81 TSTILAVARRIYGNDYRKQILELNASDDRGIDVVREQIKNFAETRTLFAKG-FKLIILDE 139
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
AD MT AQ ALRR +E Y+ + RF + CN +KII IQSRC RFS L E+ RL
Sbjct: 140 ADMMTTAAQSALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPITEVEKRL 199
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH 239
V++ E V +G +A++ + GDMR+ALN LQA ++ + + ++ PHP
Sbjct: 200 NSVIEAEGVKLTEDGKKALLKLSKGDMRRALNVLQACHAAYDRSGEAEIYNCTGNPHPSD 259
Query: 240 VKNMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAG 298
++ +V ++L+ F + + + L + G + D+I + ++ + + ++ +
Sbjct: 260 IETIVNSMLQDDFTTSYNLISALKTERGLALPDLINGAYEYLQTIQFKPNARIYLLDFLA 319
Query: 299 FAHMRICDGVGSYLQLCGLLAKL-SIVRETAKAV 331
R+ G +QL LL + V +AK++
Sbjct: 320 TTEHRLSTGGNEKIQLTALLGAFKNAVELSAKSI 353
>gi|223477952|ref|YP_002582171.1| replication factor C small subunit [Thermococcus sp. AM4]
gi|214033178|gb|EEB74006.1| Replication factor C small subunit [Thermococcus sp. AM4]
Length = 870
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 120/282 (42%), Positives = 177/282 (62%), Gaps = 9/282 (3%)
Query: 44 GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQK 103
GN+P ++ TT+ LALA EL G N+R +ELNASD+RGI+V+R K+K FA+
Sbjct: 591 GNLPTVL-------HNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFART 643
Query: 104 KVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCA 163
K + K++ LDEAD++T AQQALRRTME++SN+ RF L+CN SSKIIEPIQSRCA
Sbjct: 644 K-PVAGASFKIIFLDEADALTQDAQQALRRTMEMFSNNVRFILSCNYSSKIIEPIQSRCA 702
Query: 164 IVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFV 223
I RF L+DE+I R+ + ++E + EGL+AI++ A+GD+R+A+N LQA + + +
Sbjct: 703 IFRFRPLNDEDIAKRIKYIAEQEGLELTEEGLQAILYVAEGDLRRAINVLQAAAALDKKI 762
Query: 224 NQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRIIKN 282
ENVF V + P V+ M+ LEG F A L++ L G S D++ + + + N
Sbjct: 763 TDENVFLVASRARPEDVREMMTLALEGNFLKAREKLREVLLKQGLSGEDVLIQMHKEVFN 822
Query: 283 YEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324
+ E K+ + G + R+ +G +QL LLA+ +I+
Sbjct: 823 LPIPEDKKVALADKIGEYNFRLVEGANEMIQLEALLAQFTIM 864
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
PWVEKYRP ++ DIVG V RL A+ G+MP+L+ AGPPG GK
Sbjct: 14 PWVEKYRPQRLDDIVGQEHIVKRLKHYAKTGSMPHLLFAGPPGVGK 59
>gi|74211816|dbj|BAE29258.1| unnamed protein product [Mus musculus]
Length = 339
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 121/323 (37%), Positives = 186/323 (57%), Gaps = 3/323 (0%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
+++ A ++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA
Sbjct: 12 AAARARNLPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILA 71
Query: 66 LAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
A +L + V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT
Sbjct: 72 CAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMT 130
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VVQ
Sbjct: 131 QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQ 190
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EE V +G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++
Sbjct: 191 EENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANIL 250
Query: 245 RNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
+L F A + +L L G + DI+T + + + +++ + + R
Sbjct: 251 DWMLNQDFTTAYKSIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIEYR 310
Query: 304 ICDGVGSYLQLCGLLAKLSIVRE 326
+ G +QL L+A + R+
Sbjct: 311 LSVGTSEKIQLSSLIAAFQVTRD 333
>gi|110625924|ref|NP_082404.1| replication factor C subunit 5 [Mus musculus]
gi|30913281|sp|Q9D0F6.1|RFC5_MOUSE RecName: Full=Replication factor C subunit 5; AltName:
Full=Activator 1 36 kDa subunit; Short=A1 36 kDa
subunit; AltName: Full=Activator 1 subunit 5; AltName:
Full=Replication factor C 36 kDa subunit; Short=RF-C 36
kDa subunit; Short=RFC36
gi|12847646|dbj|BAB27652.1| unnamed protein product [Mus musculus]
gi|57242935|gb|AAH89001.1| Replication factor C (activator 1) 5 [Mus musculus]
gi|74206797|dbj|BAE41638.1| unnamed protein product [Mus musculus]
gi|148687857|gb|EDL19804.1| mCG8761 [Mus musculus]
Length = 339
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 121/323 (37%), Positives = 186/323 (57%), Gaps = 3/323 (0%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
+++ A ++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA
Sbjct: 12 AAARARNLPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILA 71
Query: 66 LAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
A +L + V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT
Sbjct: 72 CAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMT 130
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VVQ
Sbjct: 131 QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQ 190
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EE V +G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++
Sbjct: 191 EENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANIL 250
Query: 245 RNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
+L F A + +L L G + DI+T + + + +++ + + R
Sbjct: 251 DWMLNQDFTTAYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIEYR 310
Query: 304 ICDGVGSYLQLCGLLAKLSIVRE 326
+ G +QL L+A + R+
Sbjct: 311 LSVGTSEKIQLSSLIAAFQVTRD 333
>gi|393240465|gb|EJD47991.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 348
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 116/318 (36%), Positives = 184/318 (57%), Gaps = 5/318 (1%)
Query: 10 AYD---IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
AYD +PWVEKYRP + D+V + + +P+L+ GPPGTGKT++ILA+
Sbjct: 24 AYDPENLPWVEKYRPVALSDVVSHDGITTTIENFIEKNRLPHLLFYGPPGTGKTSTILAV 83
Query: 67 AHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG 126
A + G +Y+ ++ELNASDDRGIDVVR +IK FA+ + TL K+++LDEAD MT
Sbjct: 84 ARRIYGNDYKRQILELNASDDRGIDVVREQIKQFAETR-TLFRRSFKLIILDEADMMTQA 142
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQ ALRR +E Y+ + RF + CN +KI IQSRC RFS L +++ R+ V++ E
Sbjct: 143 AQSALRRIIEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPIQDVERRVRHVIEAE 202
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
V P+GL+A++ + GDMR+ALN LQA ++ + + ++ PHP ++ +V++
Sbjct: 203 DVKIEPDGLDALLKLSKGDMRRALNILQACHAAYDRTTETEIYNCTGSPHPADIQAIVQS 262
Query: 247 VLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
++ +F A + ++ + G + D+IT + +++ E+ ++ + R+
Sbjct: 263 MMTEEFTTAYHNISRIRVERGLALQDLITGAYDYVESIELPPQARVYLLDHLADTEHRLS 322
Query: 306 DGVGSYLQLCGLLAKLSI 323
G LQ LL I
Sbjct: 323 TGGSEKLQFTALLGAFKI 340
>gi|14325757|dbj|BAB60660.1| replication factor C subunit [Thermoplasma volcanium GSS1]
Length = 330
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 187/309 (60%), Gaps = 3/309 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W EKYRP + +I G + + +L +P+L+ AG GTGKT++ +ALA EL G +
Sbjct: 17 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFGES 76
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++E +E+NAS++ GIDV+RNKIK A+ + + P G K++ LDEAD +TA AQ ALRRT
Sbjct: 77 WKENFIEMNASNENGIDVIRNKIKDIARIRPSNPLG-FKILFLDEADQLTAEAQAALRRT 135
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME+YS +TRF ACN SSKII PIQSR ++RF + DE I +L + + E E
Sbjct: 136 MEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAKNEGFTIDDES 195
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
+EA++ + GDMR+A+N LQA Y+ ++ + ++++ P V ++ + G FD+
Sbjct: 196 MEAMVEVSGGDMRKAINVLQAVYTSGE-ISPKKIYEIIGYASPESVNKLISRAINGLFDE 254
Query: 255 ACSGL-KQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + K + + G S DI+ ++ I++ + K+E +K A RI +G +Q
Sbjct: 255 ARQIVDKMMIEDGLSGIDIVKSVHSIVRASVVPPKQKIEIIKALADAEFRIVEGSNDRIQ 314
Query: 314 LCGLLAKLS 322
L L+A+++
Sbjct: 315 LDALIARIA 323
>gi|356515927|ref|XP_003526648.1| PREDICTED: replication factor C subunit 4-like isoform 3 [Glycine
max]
Length = 335
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 135/326 (41%), Positives = 183/326 (56%), Gaps = 21/326 (6%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP +V D+ + V L G+ P+++ GPPGTGKTT+ LA+AH+L G
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFG- 68
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGKHKVVVLDEADSMTAG 126
V+ELNASDDRGI+VVR KIK FA Q K P K++VLDEADSMT
Sbjct: 69 -----VLELNASDDRGINVVRTKIKDFAAVAVGTNQCKNGYPCPPFKIIVLDEADSMTED 123
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS+E + SR++ + QEE
Sbjct: 124 AQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQEE 183
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMVR 245
+ E L + F + GD+R+A+ LQ+ F ++ EN+ V V+ +++
Sbjct: 184 GLCLDAEALSTLSFISHGDLRRAITYLQSAARLFGSSISSENLISVSGVVPAKVVEALLK 243
Query: 246 NVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFMKEAGFAHMRI 304
G FD A + GY + ++T LF I++ ++++ K K+ G A +
Sbjct: 244 ACKSGNFDLANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARISKKLGEADKCL 303
Query: 305 CDGVGSYLQLCGLLAKLSIVRETAKA 330
DG YLQL L +V T KA
Sbjct: 304 VDGADEYLQL------LDVVSNTIKA 323
>gi|363745367|ref|XP_003643277.1| PREDICTED: replication factor C subunit 2-like, partial [Gallus
gallus]
gi|363745602|ref|XP_003643342.1| PREDICTED: replication factor C subunit 2-like, partial [Gallus
gallus]
Length = 175
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 98/165 (59%), Positives = 132/165 (80%)
Query: 157 PIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT 216
PIQSRCA++R+++L+D +IL+RL+ +V++E VPY +GLEAIIFTA GDMRQALNNLQ+T
Sbjct: 1 PIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYTDDGLEAIIFTAQGDMRQALNNLQST 60
Query: 217 YSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTL 276
YSGF F+N ENVFKVCD+PHPL VK M+++ + D+A L L+ LGYSP D+I +
Sbjct: 61 YSGFGFINSENVFKVCDEPHPLLVKEMIQHCINANIDEAYKILAHLWRLGYSPEDVIGNI 120
Query: 277 FRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKL 321
FR+ K ++M E+LKLEF+KE G+ HM+I +GV S LQ+ GLLA+L
Sbjct: 121 FRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARL 165
>gi|164656737|ref|XP_001729496.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966]
gi|159103387|gb|EDP42282.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966]
Length = 349
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 123/329 (37%), Positives = 188/329 (57%), Gaps = 4/329 (1%)
Query: 4 SSSSSSAYDI-PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
+S +SS++D+ PWVEKYRP+ + I+ + A L +P+L+ GPPGTGKT++
Sbjct: 13 ASDASSSHDLLPWVEKYRPSSLDQIMSHQHITATLEKFITANQLPHLLFYGPPGTGKTST 72
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEA 120
I+ALA L G ++R V+ELNASDDRGIDVVR +IK FA + K K+V+LDEA
Sbjct: 73 IMALAARLYGASFRNNVLELNASDDRGIDVVRGQIKAFASTRNVFSTQKDTFKLVILDEA 132
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D+MT AQ ALRR ME Y+ + RF + CN +KII IQSRC RFS L ++ ++
Sbjct: 133 DAMTQAAQAALRRVMEQYTRNVRFCIICNYVNKIIPAIQSRCTRFRFSPLDRVQVERQID 192
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
V+ E + AI+ GDMR+ALN LQA ++ +++++V+ PHP +
Sbjct: 193 SVIAAEHCQIDAKAKHAILQLCQGDMRRALNILQACHAANDMIDEDSVYLCTGHPHPQDI 252
Query: 241 KNMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGF 299
+ + +LE +F A ++ L + G + TD++T + ++ + E+ H ++ +
Sbjct: 253 ETAFQAMLEQEFTTAFQTIQTLRVEKGLALTDLLTGMHALVLSLELPPHARVFLLDHMAQ 312
Query: 300 AHMRICDGVGSYLQLCGLLAKLSIVRETA 328
R+ +QL LLA + E A
Sbjct: 313 IEYRLSTNASERVQLSALLASVKAAVELA 341
>gi|356509381|ref|XP_003523428.1| PREDICTED: replication factor C subunit 4-like isoform 2 [Glycine
max]
Length = 330
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 134/327 (40%), Positives = 184/327 (56%), Gaps = 28/327 (8%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP +V D+ +D P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 10 PWVEKYRPKQVKDVAH------------QDEVCPHMLFYGPPGTGKTTTALAIAHQLFGP 57
Query: 74 N-YREAVMELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGKHKVVVLDEADSMTA 125
Y+ V+ELNASDDRGI+VVR KIK FA Q+K P K++VLDEADSMT
Sbjct: 58 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRKSGYPCPPFKIIVLDEADSMTE 117
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS+E + SR++ + QE
Sbjct: 118 DAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQE 177
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMV 244
E + E L + + GD+R+A+ LQ+ F ++ EN+ V V+ ++
Sbjct: 178 EGLCLDAEALSTLSSISHGDLRRAITYLQSAARLFGSSISSENLISVSGVVPAKVVEELL 237
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFMKEAGFAHMR 303
+ G FD A + GY + ++T LF I+++ ++++ K K+ G A
Sbjct: 238 KACKSGNFDLANKEVNNFIAEGYPASQMLTQLFESIVEDNDLSDEQKARISKKLGEADKC 297
Query: 304 ICDGVGSYLQLCGLLAKLSIVRETAKA 330
+ DG YLQL L +V T KA
Sbjct: 298 LVDGADEYLQL------LDVVSNTMKA 318
>gi|354466990|ref|XP_003495954.1| PREDICTED: replication factor C subunit 5 [Cricetulus griseus]
Length = 338
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 122/323 (37%), Positives = 186/323 (57%), Gaps = 3/323 (0%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
+++ A ++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA
Sbjct: 11 AAARARNLPWVEKYRPQTLADLISHQDILSSIQKFISEDRLPHLLLYGPPGTGKTSTILA 70
Query: 66 LAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
A +L + V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT
Sbjct: 71 CAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMT 129
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VVQ
Sbjct: 130 QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQ 189
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EE V +G++A+I + GDMR+ALN LQ+T F V +E V+ P + N++
Sbjct: 190 EENVDISEDGMKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANIL 249
Query: 245 RNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
+L F A + +L L G + DI+T + + + +++ + + R
Sbjct: 250 DWMLNQDFTTAYRHIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIEYR 309
Query: 304 ICDGVGSYLQLCGLLAKLSIVRE 326
+ G +QL L+A + R+
Sbjct: 310 LSVGTSEKIQLSSLIAAFQVTRD 332
>gi|410930528|ref|XP_003978650.1| PREDICTED: replication factor C subunit 4-like [Takifugu rubripes]
Length = 357
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 126/326 (38%), Positives = 187/326 (57%), Gaps = 9/326 (2%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+A SS+ + +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT
Sbjct: 21 LAGSSTEKTVKAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKT 80
Query: 61 TSILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKV--TLPPGK----HK 113
++ILA A EL GP YR+ V+ELNASD+RGI V+R K+K FAQ V T P GK K
Sbjct: 81 STILAAARELYGPVLYRQRVLELNASDERGIQVIREKVKTFAQLTVAGTRPDGKLCPPFK 140
Query: 114 VVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDE 173
+++LDEADSMT AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF L +
Sbjct: 141 IIILDEADSMTPPAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLDNH 200
Query: 174 EILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQ--ATYSGFRFVNQENVFKV 231
+RL+ + ++E + Y EG+ A++ ++GD+R+A+ LQ A S + + + + ++
Sbjct: 201 IQETRLLDICEKENLKYSKEGISALVRVSEGDLRKAITFLQSAARLSIAKEITEHTITEI 260
Query: 232 CDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKL 291
+ N++ G F+ ++ L D GY+ T I++ L I + + K
Sbjct: 261 AGVVPNKMIDNLLHICFRGTFEKLEVAVRNLVDEGYAATQILSQLHESIIEKDFGDKQKS 320
Query: 292 EFMKEAGFAHMRICDGVGSYLQLCGL 317
++ + DG +LQ+ L
Sbjct: 321 AIAEKMAVVSKCMLDGADEFLQMLSL 346
>gi|213514520|ref|NP_001135046.1| replication factor C subunit 5 [Salmo salar]
gi|209738250|gb|ACI69994.1| Replication factor C subunit 5 [Salmo salar]
Length = 335
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 119/317 (37%), Positives = 185/317 (58%), Gaps = 3/317 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D++ + D ++ + + +P+L+ GPPGTGKT+++LA A +L
Sbjct: 13 NLPWVEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGKTSTVLASAKQLY 72
Query: 72 GPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGIDVVR I FA + G K+V+LDEAD+MT AQ A
Sbjct: 73 KEKEFNAMVLELNASDDRGIDVVRGPILSFASTRTIFKKG-FKLVILDEADAMTRDAQNA 131
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E Y+ +TRF L CN SKII +QSRC RF LS ++++ RL V+Q+E +
Sbjct: 132 LRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQDQMIPRLEFVIQQESIDV 191
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
P+G++AI+ + GDMR++LN LQ+T + V ++NV+ P + N++ L
Sbjct: 192 TPDGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDNVYTCTGHPLRSDIANILDWSLNK 251
Query: 251 KFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
F A + + QL L G + DI+T + +I + +++ + + R+ G
Sbjct: 252 DFTSAYNQILQLKTLKGLALHDILTEVHLLIHRVDFPPAIRMGLLIKLADIEYRLASGTS 311
Query: 310 SYLQLCGLLAKLSIVRE 326
+QL ++A VR+
Sbjct: 312 EKIQLSSMVAAFQAVRD 328
>gi|388505532|gb|AFK40832.1| unknown [Lotus japonicus]
Length = 342
Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 185/327 (56%), Gaps = 16/327 (4%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP +V D+ + V L G+ P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 10 PWVEKYRPKQVKDVAYQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 74 N-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK-------HKVVVLDEADSMTA 125
Y+ V+ELNASDDRGI+VVR KIK FA V P K +K++VLDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNPKKGGYPCPPYKIIVLDEADSMTE 129
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS+E + SR++ + E
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILYICNE 189
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMV 244
E + EGL + + GD+R+A+ LQ++ F ++ +++ V V+ ++
Sbjct: 190 EGLHLDAEGLSTLSSISQGDLRRAITYLQSSARLFGSHISSKDLISVSGVVPENVVEAIL 249
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLF-RIIKNYEMAEHLKLEFMKEAGFAHMR 303
+ G FD A + GY + ++T LF I++ ++ K K+ G A
Sbjct: 250 KACKSGNFDLANKEVNNFIAEGYPASQLLTQLFDAIVEEKGTSDKQKARICKKLGEADKC 309
Query: 304 ICDGVGSYLQLCGLLAKLSIVRETAKA 330
+ DG YLQL L ++ T KA
Sbjct: 310 LVDGADEYLQL------LDVISNTTKA 330
>gi|341582780|ref|YP_004763272.1| replication factor C small subunit [Thermococcus sp. 4557]
gi|340810438|gb|AEK73595.1| replication factor C small subunit [Thermococcus sp. 4557]
Length = 866
Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 120/282 (42%), Positives = 176/282 (62%), Gaps = 9/282 (3%)
Query: 44 GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQK 103
GN+P ++ TT+ LALA EL G N+R +ELNASD+RGI+V+R K+K FA+
Sbjct: 591 GNLPTVL-------HNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFART 643
Query: 104 KVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCA 163
K + K++ LDEAD++T AQQALRRTME++SN+ RF L+CN SSKIIEPIQSRCA
Sbjct: 644 K-PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSNNVRFILSCNYSSKIIEPIQSRCA 702
Query: 164 IVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFV 223
I RF L+DE+I R+ + ++E + EGL+AI++ A+GD+R+A+N LQA + + +
Sbjct: 703 IFRFRPLNDEDIAKRIKYIAEQEGLELTEEGLQAILYVAEGDLRRAINVLQAAAALDKKI 762
Query: 224 NQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRIIKN 282
ENVF V + P V+ M+ LEG F A L+ L G S D++ + + + N
Sbjct: 763 TDENVFLVASRARPEDVREMMTLALEGNFLKARDKLRDILLKQGLSGEDVLIQMHKEVFN 822
Query: 283 YEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324
+ E K+ + G + R+ +G +QL LLA+ +I+
Sbjct: 823 LPIPEDRKVALADKIGEYNFRLVEGANEMIQLEALLAQFTIM 864
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
PWVEKYRP ++ DIVG V RL A+ G+MP+L+ AGPPG GK
Sbjct: 14 PWVEKYRPARLDDIVGQAHIVKRLKHYAKTGSMPHLLFAGPPGVGK 59
>gi|392574508|gb|EIW67644.1| hypothetical protein TREMEDRAFT_69661 [Tremella mesenterica DSM
1558]
Length = 350
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 123/326 (37%), Positives = 191/326 (58%), Gaps = 2/326 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A S+ +SA VEKYRP + ++V + D + G +P+L+L GPPGTGKT+
Sbjct: 19 AMSTLMASAKADNRVEKYRPNTLDEVVSHQDITNTIEKFIEAGRLPHLLLYGPPGTGKTS 78
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
++LALA L GP Y++ ++ELNASDDRGIDVVR++IK FA KV G K+V+LDEAD
Sbjct: 79 TVLALARRLYGPPYQKHILELNASDDRGIDVVRDQIKSFAMTKVLFSKG-FKLVILDEAD 137
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
MT AQ ALRR +E ++ + RF + CN +KI IQSRC RFS L ++E+ ++
Sbjct: 138 MMTQAAQSALRRVIETHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEVQRKVDD 197
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
VV++E V +G A++ + GDMR+ALN LQA ++ + +++ V+ PHP ++
Sbjct: 198 VVEKEGVNLTDDGRAALLKLSKGDMRRALNVLQACHAAYDKIDEMAVYTCTGNPHPRDIE 257
Query: 242 NMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
+V++++ +F + S + L + G + D+I+ + ++ EM ++ + G
Sbjct: 258 RVVQSMMADEFGTSYSLITSLKLEKGLALQDLISGAYDFLQTIEMPPSARVYLLDHLGSC 317
Query: 301 HMRICDGVGSYLQLCGLLAKLSIVRE 326
R+ G +QL LL I E
Sbjct: 318 EHRLSLGGSEKMQLTALLGAFKIAVE 343
>gi|356515925|ref|XP_003526647.1| PREDICTED: replication factor C subunit 4-like isoform 2 [Glycine
max]
Length = 330
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 135/327 (41%), Positives = 183/327 (55%), Gaps = 28/327 (8%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP +V D+ +D P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 10 PWVEKYRPKQVKDVAH------------QDEVCPHMLFYGPPGTGKTTTALAIAHQLFGP 57
Query: 74 N-YREAVMELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGKHKVVVLDEADSMTA 125
Y+ V+ELNASDDRGI+VVR KIK FA Q K P K++VLDEADSMT
Sbjct: 58 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQCKNGYPCPPFKIIVLDEADSMTE 117
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS+E + SR++ + QE
Sbjct: 118 DAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQE 177
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMV 244
E + E L + F + GD+R+A+ LQ+ F ++ EN+ V V+ ++
Sbjct: 178 EGLCLDAEALSTLSFISHGDLRRAITYLQSAARLFGSSISSENLISVSGVVPAKVVEALL 237
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFMKEAGFAHMR 303
+ G FD A + GY + ++T LF I++ ++++ K K+ G A
Sbjct: 238 KACKSGNFDLANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARISKKLGEADKC 297
Query: 304 ICDGVGSYLQLCGLLAKLSIVRETAKA 330
+ DG YLQL L +V T KA
Sbjct: 298 LVDGADEYLQL------LDVVSNTIKA 318
>gi|384248832|gb|EIE22315.1| DNA replication factor C complex subunit 5 [Coccomyxa
subellipsoidea C-169]
Length = 334
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 183/316 (57%), Gaps = 2/316 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
D PWVEKYRP + D+ + + + + + ++ P+++ GPPGTGKT++ILA+A ++
Sbjct: 13 DAPWVEKYRPKTLDDVAAHKEIIDTIKRLVKEDRFPHVLFYGPPGTGKTSTILAVARQMY 72
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G + R V+ELNASDDRGI +VR +I FA K T+ K K+V+LDE D+MT AQ AL
Sbjct: 73 GASLRSMVLELNASDDRGIGIVREQIVDFASTK-TMFSNKFKLVILDECDAMTKDAQAAL 131
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR +E Y+ +TRF L CN +KII +QSRC RF L+D + SRL V+ E+V
Sbjct: 132 RRVIEKYTRNTRFCLICNYVNKIIPALQSRCTRFRFPPLADSYVRSRLQFVIDSERVNMG 191
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
GL+A++ GDMR+ LN LQAT+ V++E V++ P P ++ +V+ +
Sbjct: 192 DGGLDAVVTLGAGDMRRTLNILQATHMSADVVSEEAVYQCTGNPLPKDIEAIVQALFNED 251
Query: 252 FDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
F D + ++ + + G + TDI+ L + M ++++ + R+ G
Sbjct: 252 FVDVFAKVQDMQINKGLALTDIVQQLHPWVFRVNMPASVRIKLVDALADTEHRLAFGTSE 311
Query: 311 YLQLCGLLAKLSIVRE 326
LQL L+ S+ RE
Sbjct: 312 RLQLGALVGAFSVARE 327
>gi|157821267|ref|NP_001100616.1| replication factor C subunit 5 [Rattus norvegicus]
gi|149063502|gb|EDM13825.1| replication factor C (activator 1) 5 (predicted) [Rattus
norvegicus]
gi|197245812|gb|AAI68902.1| Replication factor C (activator 1) 5 [Rattus norvegicus]
Length = 338
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 121/322 (37%), Positives = 185/322 (57%), Gaps = 3/322 (0%)
Query: 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
++ A ++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA
Sbjct: 12 AARARNLPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILAC 71
Query: 67 AHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
A +L + V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT
Sbjct: 72 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKRG-FKLVILDEADAMTQ 130
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VVQE
Sbjct: 131 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQE 190
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E V +G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++
Sbjct: 191 ENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILD 250
Query: 246 NVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRI 304
+L F A + +L L G + DI+T + + + +++ + + R+
Sbjct: 251 WMLNQDFTTAYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRMHLLTKMADIEYRL 310
Query: 305 CDGVGSYLQLCGLLAKLSIVRE 326
G +QL L+A + R+
Sbjct: 311 SVGTSEKIQLSSLIAAFQVTRD 332
>gi|213512735|ref|NP_001134241.1| replication factor C subunit 4 [Salmo salar]
gi|209731766|gb|ACI66752.1| Replication factor C subunit 4 [Salmo salar]
Length = 355
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 183/325 (56%), Gaps = 13/325 (4%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
+S +PWVEKYRP + ++ + VA L ++PNL+ GPPGTGKT++I
Sbjct: 23 TSGEKKQKSVPWVEKYRPKCMEEVAFQEEVVAVLKKTIEGADLPNLLFYGPPGTGKTSTI 82
Query: 64 LALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKHKV 114
LA A EL GP YR+ V+ELNASD+RGI VVR K+K FAQ V PP K+
Sbjct: 83 LAAARELYGPELYRQRVLELNASDERGIQVVREKVKRFAQLTVAGHRTDGKPCPP--FKI 140
Query: 115 VVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEE 174
++LDEADSMT AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF L+++
Sbjct: 141 IILDEADSMTNAAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLANQV 200
Query: 175 ILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQ--ATYSGFRFVNQENVFKVC 232
RL+ + +E + Y EG+ A++ ++GD+R+A+ LQ A + + + V ++
Sbjct: 201 QEERLLDICDKENLKYSKEGIAALVKVSEGDLRKAITFLQSAARLNTDNEITESAVIEIA 260
Query: 233 DQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLE 292
P + N+++ +G F+ ++ + D GY+ T II L I E+ + K
Sbjct: 261 GVVPPKMIDNLLKICYKGTFEKLEIAVRNMVDEGYAATQIINQLHEAIIEEELNDKQKSA 320
Query: 293 FMKEAGFAHMRICDGVGSYLQLCGL 317
++ + DG YLQ+ L
Sbjct: 321 ITEKMAVVDKCLVDGADEYLQMLSL 345
>gi|395326617|gb|EJF59024.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 354
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/309 (36%), Positives = 175/309 (56%), Gaps = 2/309 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D+V + D + + +P+L+ GPPGTGKT++ILA+A +
Sbjct: 34 NLPWVEKYRPVTLDDVVSHHDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIY 93
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G YR+ ++ELNASDDRGI+VVR +IK FA+ + G +K+++LDEAD MT AQ AL
Sbjct: 94 GTEYRKQILELNASDDRGIEVVREQIKNFAETRTLFSKG-YKLIILDEADMMTTAAQSAL 152
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR +E Y+ + RF + CN +KII IQSRC RFS L E+ R+ V+ E V
Sbjct: 153 RRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPIPEVEKRVNNVIDAEGVKIT 212
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
EG +A++ + GDMR+ALN LQA ++ + + ++ P P ++ +V ++L+
Sbjct: 213 AEGKQALLKLSKGDMRRALNVLQACHAAYELTGEAEIYNCTGNPQPADIETIVNSMLQDD 272
Query: 252 FDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
F + + + L D G + D+I + I+ H ++ + R+ G
Sbjct: 273 FTTSYNLISALKIDRGLALPDLINGAYEYIETINFKPHARIYLLDFLATTEHRLSTGGSE 332
Query: 311 YLQLCGLLA 319
LQ LL
Sbjct: 333 KLQFTALLG 341
>gi|326429717|gb|EGD75287.1| replication factor C subunit 5 [Salpingoeca sp. ATCC 50818]
Length = 330
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/322 (37%), Positives = 180/322 (55%), Gaps = 2/322 (0%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
+SS+ ++PWVEKYRP + +V + + + + + +P+L+ GPPGTGKT++I
Sbjct: 2 TSSAPTTNLPWVEKYRPDSLDQLVSHKEIIDTIQRFVDEKRLPHLLFYGPPGTGKTSTIK 61
Query: 65 ALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
A A +L G Y+ V+ELNASDDRGI VVR +IK FA K G K+++LDEAD+MT
Sbjct: 62 ACAKQLYGKAYKSMVLELNASDDRGIGVVREQIKTFASTKTVFSAG-FKLIILDEADAMT 120
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALRR +E Y+ TRF L CN SKI +QSRC RF+ L+ E ++ ++ V+
Sbjct: 121 NDAQAALRRVIEKYTKHTRFCLICNYVSKISPALQSRCTRFRFAPLATEHMIQQVQRVID 180
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
E + P G+EA++ A GDMR+ALN LQ+T+ F VN E V+ P P ++ +V
Sbjct: 181 AEHIETTPAGIEALVKLASGDMRKALNILQSTFMAFNKVNDEGVYLCTGTPLPADIEAIV 240
Query: 245 RNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
+L F A + ++ + G + DI+ + I ++ +L + R
Sbjct: 241 EVMLNESFKTAFRKIMEIKTEQGLALQDILHDVHEFIHRLDIPTASRLLLLDRLAQIEER 300
Query: 304 ICDGVGSYLQLCGLLAKLSIVR 325
+ G QL L+ +VR
Sbjct: 301 LAYGANERAQLADLVGVFQVVR 322
>gi|224072550|ref|XP_002188696.1| PREDICTED: replication factor C subunit 5 [Taeniopygia guttata]
Length = 329
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 187/325 (57%), Gaps = 11/325 (3%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + ++V + D ++ + + +P+L+L GPPGTGKT++ILA A +L
Sbjct: 8 NLPWVEKYRPQALSELVFHRDILSTVQRFISEDRLPHLLLYGPPGTGKTSTILACARQL- 66
Query: 72 GPNYRE-----AVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG 126
YRE V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT
Sbjct: 67 ---YREREFSSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQD 122
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQ ALRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL V+QEE
Sbjct: 123 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVIQEE 182
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
V +G++A++ + GDMR+ALN LQ+T F V +ENV+ P + N++
Sbjct: 183 GVDVTEDGMKALVTLSSGDMRRALNILQSTSMAFGKVTEENVYTCTGHPLKSDIANILDW 242
Query: 247 VLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
+L F A + +L L G + DI+T + + + ++++ + + R+
Sbjct: 243 MLNQDFSTAYRKIMELKTLKGLALQDILTEIHLFVHRVDFPPSIRIQLLIKLADIEYRLA 302
Query: 306 DGVGSYLQLCGLLAKLSIVRETAKA 330
G +QL L+A + R+ A
Sbjct: 303 AGTSEKIQLSSLIAAFQVTRDLVVA 327
>gi|41614964|ref|NP_963462.1| replication factor C small subunit [Nanoarchaeum equitans Kin4-M]
gi|42559422|sp|P60374.1|RFCS_NANEQ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|40068688|gb|AAR39023.1| NEQ170 [Nanoarchaeum equitans Kin4-M]
Length = 322
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 128/319 (40%), Positives = 189/319 (59%), Gaps = 18/319 (5%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W EKYRP ++ DI+ + L NMP+L+ AGPPGTGKTT+ LALAHEL G
Sbjct: 4 WTEKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELYGDA 63
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQALR 132
+RE +ELNASD+RGIDV+R+K+K FA+ K P G K+V LDEAD++T AQQALR
Sbjct: 64 WRENFLELNASDERGIDVIRHKVKEFARAK---PIGDVPFKIVFLDEADALTRDAQQALR 120
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDE---EILSRLM----VVVQE 185
R ME YS STRF L+CN SKIIEPIQSR + +F L E E+++R++ ++++
Sbjct: 121 RIMEKYSQSTRFILSCNYFSKIIEPIQSRVTVFKFKPLEKEAFRELINRIVKGEGLILEN 180
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E E + A+ A+GD+R+A+N LQA + + + ++++ P + ++
Sbjct: 181 E-----DEIINALYDIAEGDLRKAINILQAAAMMSKTITVDRLYEIASIAKPKEIDEVLN 235
Query: 246 NVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRI 304
++G F +A S L L G S D+I + + + + +++ KL + + G RI
Sbjct: 236 KAMQGNFLEARSMLIDLMLKYGMSGEDVIKAIQKRVWSLPISDREKLMILDKIGDIEFRI 295
Query: 305 CDGVGSYLQLCGLLAKLSI 323
+G +QL LLA L +
Sbjct: 296 VEGADDLVQLDALLAWLGL 314
>gi|225716862|gb|ACO14277.1| Replication factor C subunit 5 [Esox lucius]
Length = 335
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/329 (37%), Positives = 188/329 (57%), Gaps = 4/329 (1%)
Query: 1 MASSSSSS-SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
MAS+S + ++PWVEKYRP + D++ + D ++ + + +P+L+ GPPGTGK
Sbjct: 1 MASTSKIPLQSRNLPWVEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGK 60
Query: 60 TTSILALAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLD 118
++ILA A +L + V+ELNASDDRGIDVVR I FA + G K+V+LD
Sbjct: 61 ISTILACAKQLYKDKEFNAMVLELNASDDRGIDVVRGPILSFASTRTIFKKG-FKLVILD 119
Query: 119 EADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSR 178
EAD+MT AQ ALRR +E Y+ +TRF L CN SKII +QSRC RF LS ++++ R
Sbjct: 120 EADAMTRDAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRSRFGPLSQDQMIPR 179
Query: 179 LMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPL 238
L V+Q+E + P+G++AI+ + GDMR++LN LQ+T + V ++NV+ P
Sbjct: 180 LEHVIQQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDNVYTCTGHPLRS 239
Query: 239 HVKNMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
+ N++ L F A QL L G + DI+T + +I + +++ + +
Sbjct: 240 DIANILEWALNKDFSTAYKQTLQLKTLKGLALHDILTEIHLVIHRVDFPPAIRMGLLIKL 299
Query: 298 GFAHMRICDGVGSYLQLCGLLAKLSIVRE 326
R+ G +QL ++A VR+
Sbjct: 300 AEIEYRLASGTSEKIQLSSMVAAFQAVRD 328
>gi|410923359|ref|XP_003975149.1| PREDICTED: replication factor C subunit 5-like [Takifugu rubripes]
Length = 335
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/329 (36%), Positives = 189/329 (57%), Gaps = 4/329 (1%)
Query: 1 MASSSSSS-SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
M+S+S + ++PWVEKYRP K+ D++ + D ++ + + +P+L+ GPPGTGK
Sbjct: 1 MSSNSKTPLQKRNLPWVEKYRPQKLDDLISHRDILSTIQKFINEDKLPHLLFYGPPGTGK 60
Query: 60 TTSILALAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLD 118
T++ILA A +L + V+ELNASDDRGIDVVR I FA + G K+V+LD
Sbjct: 61 TSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKG-FKLVILD 119
Query: 119 EADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSR 178
EAD+MT AQ ALRR +E ++ +TRF L CN SKII +QSRC RF LS ++++ R
Sbjct: 120 EADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPR 179
Query: 179 LMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPL 238
L V+Q+E + P+G++AI+ + GDMR++LN LQ+T + V +E + P
Sbjct: 180 LEHVIQQESIDITPDGMKAIVTLSSGDMRRSLNILQSTSMAYEKVTEETAYNCTGHPLRS 239
Query: 239 HVKNMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
+ N++ L F A + +L L G + DI+T + +I + +++ + +
Sbjct: 240 DIANILDWALNKDFTTAYKQILELKTLKGLALQDILTEVHLLIHRVDFPPDIRIGLLIKL 299
Query: 298 GFAHMRICDGVGSYLQLCGLLAKLSIVRE 326
R+ G +QL ++A VR+
Sbjct: 300 ADVEHRLASGTDEKIQLSSMVAAFQAVRD 328
>gi|374325546|ref|YP_005083743.1| replication factor C small subunit [Pyrobaculum sp. 1860]
gi|356640812|gb|AET31491.1| replication factor C small subunit [Pyrobaculum sp. 1860]
Length = 319
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 130/316 (41%), Positives = 180/316 (56%), Gaps = 12/316 (3%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++ W EKYRP ++V + ARL + G+MP+L+ GPPGTGKTT L LA EL
Sbjct: 3 ELFWFEKYRPRSFDEVVDLEEVKARLRGFVKSGDMPHLLFYGPPGTGKTTMALVLARELY 62
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQ 129
G +RE +ELNASD+RGI+V+R ++K FA+ T P GK K+V+LDEAD+MT+ AQQ
Sbjct: 63 GEYWRENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQ 119
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRR MEIY+ +TRF L N S IIEPIQSR + RFS L E + +RL + + E V
Sbjct: 120 ALRRIMEIYAQNTRFILLANYISGIIEPIQSRTVMFRFSPLPKEAVFTRLRYIAENEGVK 179
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
+ LE I GDMR+A+N LQ S + V +E V + P ++ + ++
Sbjct: 180 ISDDALETIYEFTQGDMRRAINALQIAASVDKEVTEEVVARALGMVSPRLLREALHEAVK 239
Query: 250 GKFDDACSGLKQLY----DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
G F A + Q+Y D G +II + R + ++ E++K E AH I
Sbjct: 240 GSFGKAAT---QIYGFVVDGGVGELEIIKQIHREVLRLDVPEYVKPELAYIIAEAHYAIL 296
Query: 306 DGVGSYLQLCGLLAKL 321
G Q+ G LAK+
Sbjct: 297 RGAHGLTQIYGALAKV 312
>gi|389851690|ref|YP_006353924.1| replication factor C small subunit [Pyrococcus sp. ST04]
gi|388248996|gb|AFK21849.1| replication factor C small subunit [Pyrococcus sp. ST04]
Length = 867
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/284 (42%), Positives = 177/284 (62%), Gaps = 13/284 (4%)
Query: 44 GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQK 103
GN+P ++ TT+ LALA EL G N+R +ELNASD+RGI+V+R K+K FA+
Sbjct: 591 GNLPTVL-------HNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFART 643
Query: 104 KVTLPPG--KHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSR 161
K P G K++ LDEAD++T AQQALRRTME++S + RF L+CN SSKIIEPIQSR
Sbjct: 644 K---PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSINVRFILSCNYSSKIIEPIQSR 700
Query: 162 CAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFR 221
CAI RF L DE+I RL + + E + EGL+AI++ A+GDMR+A+N LQA + +
Sbjct: 701 CAIFRFRPLRDEDIAKRLKFIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDK 760
Query: 222 FVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRII 280
+ ENVF V + P V+ M+ LEG F A L++ L G S D++ + + +
Sbjct: 761 KITDENVFMVASRARPEDVRQMMLLALEGNFLKAREKLREILLKQGLSGEDVLVQMHKEV 820
Query: 281 KNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324
N ++E K++ + G + R+ +G +QL LLA+ +++
Sbjct: 821 FNLPISEPKKVQLADKIGEYNFRLVEGANEMIQLEALLAQFTLI 864
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
M + PWVEKYRP ++ DIVG V RL + G+MP+L+ AGPPG GK
Sbjct: 1 MGEEVREVKVLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGK 59
>gi|119873156|ref|YP_931163.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
gi|150415671|sp|A1RV38.1|RFCS2_PYRIL RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|119674564|gb|ABL88820.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
Length = 320
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 182/316 (57%), Gaps = 12/316 (3%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++ W EKYRP ++V + +RL + GNMP+L+ GPPGTGKTT L LA EL
Sbjct: 3 ELFWFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELY 62
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQ 129
G +RE +ELNASD+RGI+V+R ++K FA+ T P GK K+V+LDEAD+MT+ AQQ
Sbjct: 63 GEYWRENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQ 119
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRR MEIY+ +TRF L N S IIEPIQSR ++RF+ L E ++SRL + + E V
Sbjct: 120 ALRRIMEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVISRLRYIAENEGVK 179
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
+ LE I GDMR+A+N LQ + + + ++ V + P ++ ++ L+
Sbjct: 180 ISDDALETIYEFTQGDMRKAINALQIAAATEKEITEDVVARALGMVSPRLLRETLQEALK 239
Query: 250 GKFDDACSGLKQLY----DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
G F A + Q+Y D G +II + R + ++ E++K E AH
Sbjct: 240 GNFSKAMT---QIYGFVVDGGVGELEIIRQIHREVLRLDVPEYVKPELAYIIAEAHYATL 296
Query: 306 DGVGSYLQLCGLLAKL 321
G Q+ G LAK+
Sbjct: 297 RGARGLTQIFGALAKI 312
>gi|213405245|ref|XP_002173394.1| replication factor C subunit 3 [Schizosaccharomyces japonicus
yFS275]
gi|212001441|gb|EEB07101.1| replication factor C subunit 3 [Schizosaccharomyces japonicus
yFS275]
Length = 338
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 177/310 (57%), Gaps = 2/310 (0%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + D+V + D +A L +P+++ GPPGTGKT++ILA A+ + G
Sbjct: 20 LPWVEKYRPKNLDDVVAHKDIIATLEKFISTNRVPHMLFYGPPGTGKTSTILACANRIYG 79
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
PN+R VMELNASDDRGIDVVR +IK FA K K+++LDE D+MT AQ ALR
Sbjct: 80 PNFRNQVMELNASDDRGIDVVREQIKSFASTKQIFSSA-FKLIILDETDAMTLAAQNALR 138
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R +E Y+ + RF + CN +KI IQSRC RF L EI ++ V ++E P
Sbjct: 139 RVIEKYTRNVRFCIICNYINKIAPAIQSRCTRFRFQPLPITEIEKKVDEVAEKENCTISP 198
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
EG A++ + GDMR+ALN LQA ++ + V++ V+ PHP + +++++ +
Sbjct: 199 EGKTALLRLSKGDMRKALNILQACHAVYDVVDEAAVYNCVGHPHPADIDYFLKSIMNEEV 258
Query: 253 DDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A + + +L D G + DII + I ++ + ++ + R+ G
Sbjct: 259 VTASNAITKLKQDKGLALQDIIACISEAIDELQIPANARIFILDNLAKIEYRMSFGCSEK 318
Query: 312 LQLCGLLAKL 321
+QL L+A +
Sbjct: 319 IQLSALIATI 328
>gi|426247312|ref|XP_004017430.1| PREDICTED: replication factor C subunit 5 isoform 1 [Ovis aries]
Length = 336
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/316 (38%), Positives = 182/316 (57%), Gaps = 4/316 (1%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA A +L
Sbjct: 18 NLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLY 77
Query: 72 -GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT AQ A
Sbjct: 78 KDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNA 136
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+EEKV
Sbjct: 137 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDI 196
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G++A+I + GDMR+ALN LQ+T F V +E V+ P + N++ +L
Sbjct: 197 SEDGMKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQ 256
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
F A LK L G + DI+T + + + +++ + + R+ G
Sbjct: 257 DFTTAYRKLKTLK--GLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSE 314
Query: 311 YLQLCGLLAKLSIVRE 326
+QL L+A + R+
Sbjct: 315 KIQLSSLIAAFQVTRD 330
>gi|57642153|ref|YP_184631.1| replication factor C small subunit [Thermococcus kodakarensis KOD1]
gi|62287362|sp|Q5JHP2.1|RFCS_PYRKO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
Contains: RecName: Full=Pko RFC intein
gi|57160477|dbj|BAD86407.1| replication factor C, small subunit [Thermococcus kodakarensis
KOD1]
Length = 866
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 123/284 (43%), Positives = 174/284 (61%), Gaps = 13/284 (4%)
Query: 44 GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQK 103
GNMP ++ TT+ LALA EL G N+R +ELNASD+RGI+V+R K+K FA+
Sbjct: 591 GNMPTVV-------HNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFART 643
Query: 104 KVTLPPG--KHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSR 161
K P G K++ LDEAD++T AQQALRRTME++SN+ RF L+CN SSKIIEPIQSR
Sbjct: 644 K---PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSNNVRFILSCNYSSKIIEPIQSR 700
Query: 162 CAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFR 221
CAI RF L DE+I R+ + + E + EGL+AI++ A+GD+R+A+N LQA +
Sbjct: 701 CAIFRFRPLRDEDIAKRIRYIAENEGLELTEEGLQAILYVAEGDLRRAINVLQAAAALDT 760
Query: 222 FVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRII 280
+ ENVF V + P V+ M+ LEG F A L+ L G S D++ + + +
Sbjct: 761 KITDENVFLVASRARPEDVREMMTLALEGNFLKAREKLRDILLRQGLSGEDVLIQMHKEV 820
Query: 281 KNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324
N + E K+ + G + R+ +G +QL LLA+ +I+
Sbjct: 821 FNLPIPEDKKVALADKIGEYNFRLVEGANEMIQLEALLAQFTIM 864
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 32/46 (69%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
PWVEKYRP ++ DIVG V RL + G+MP+L+ AGPPG GK
Sbjct: 14 PWVEKYRPQRLEDIVGQDHIVKRLKHYVKTGSMPHLLFAGPPGVGK 59
>gi|397524983|ref|XP_003832459.1| PREDICTED: replication factor C subunit 5 [Pan paniscus]
Length = 340
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 186/323 (57%), Gaps = 3/323 (0%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
+++ ++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA
Sbjct: 13 AATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILA 72
Query: 66 LAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
A +L + V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT
Sbjct: 73 CAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMT 131
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+
Sbjct: 132 QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVE 191
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EEKV +G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++
Sbjct: 192 EEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANIL 251
Query: 245 RNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
+L F A + +L L G + DI+T + + + +++ + + R
Sbjct: 252 DWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYR 311
Query: 304 ICDGVGSYLQLCGLLAKLSIVRE 326
+ G +QL L+A + R+
Sbjct: 312 LSVGTNEKIQLSSLIAAFQVTRD 334
>gi|387849459|ref|NP_001248591.1| replication factor C subunit 5 [Macaca mulatta]
gi|402887809|ref|XP_003907273.1| PREDICTED: replication factor C subunit 5 [Papio anubis]
gi|355564724|gb|EHH21224.1| hypothetical protein EGK_04238 [Macaca mulatta]
gi|355759033|gb|EHH61566.1| hypothetical protein EGM_19495 [Macaca fascicularis]
gi|380786591|gb|AFE65171.1| replication factor C subunit 5 isoform 1 [Macaca mulatta]
gi|383414287|gb|AFH30357.1| replication factor C subunit 5 isoform 1 [Macaca mulatta]
Length = 340
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 183/317 (57%), Gaps = 3/317 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA A +L
Sbjct: 19 NLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLY 78
Query: 72 -GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT AQ A
Sbjct: 79 KDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNA 137
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+EEKV
Sbjct: 138 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDI 197
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++ +L
Sbjct: 198 SEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQ 257
Query: 251 KFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
F A + +L L G + DI+T + + + +++ + + R+ G
Sbjct: 258 DFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTN 317
Query: 310 SYLQLCGLLAKLSIVRE 326
+QL L+A + R+
Sbjct: 318 EKIQLSSLIAAFQVTRD 334
>gi|332250708|ref|XP_003274494.1| PREDICTED: replication factor C subunit 5 isoform 1 [Nomascus
leucogenys]
gi|426374300|ref|XP_004054014.1| PREDICTED: replication factor C subunit 5 [Gorilla gorilla gorilla]
Length = 340
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 186/323 (57%), Gaps = 3/323 (0%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
+++ ++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA
Sbjct: 13 AATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILA 72
Query: 66 LAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
A +L + V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT
Sbjct: 73 CAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMT 131
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+
Sbjct: 132 QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVE 191
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EEKV +G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++
Sbjct: 192 EEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANIL 251
Query: 245 RNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
+L F A + +L L G + DI+T + + + +++ + + R
Sbjct: 252 DWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYR 311
Query: 304 ICDGVGSYLQLCGLLAKLSIVRE 326
+ G +QL L+A + R+
Sbjct: 312 LSVGTNEKIQLSSLIAAFQVTRD 334
>gi|357463531|ref|XP_003602047.1| Replication factor C subunit [Medicago truncatula]
gi|357520353|ref|XP_003630465.1| Replication factor C subunit [Medicago truncatula]
gi|217073528|gb|ACJ85124.1| unknown [Medicago truncatula]
gi|355491095|gb|AES72298.1| Replication factor C subunit [Medicago truncatula]
gi|355524487|gb|AET04941.1| Replication factor C subunit [Medicago truncatula]
gi|388492316|gb|AFK34224.1| unknown [Medicago truncatula]
Length = 339
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 131/328 (39%), Positives = 188/328 (57%), Gaps = 16/328 (4%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP +V D+ + V L G+ P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 74 N-YREAVMELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGKHKVVVLDEADSMTA 125
Y+ V+ELNASDDRGI+VVR KIK FA + K P +K++VLDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNKPKNGYPCPPYKIIVLDEADSMTE 129
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF L++E + SR++ + +E
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMSSRIVYICKE 189
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMV 244
E + EGL + + GD+R+A+ LQ+ F ++ +++ V V+ ++
Sbjct: 190 EGIYLDAEGLSTLSNISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIVPAEVVEALL 249
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFMKEAGFAHMR 303
+ G FD A + GY + ++T LF I++ ++++ K K+ G A
Sbjct: 250 KACRSGNFDLANKEVNNFIAEGYPVSQMLTQLFEAIVEENDISDEQKARISKKLGEADKC 309
Query: 304 ICDGVGSYLQLCGLLAKLSIVRETAKAV 331
+ DG YLQL L +V T +A+
Sbjct: 310 LVDGADEYLQL------LDVVSNTIQAL 331
>gi|47221499|emb|CAG08161.1| unnamed protein product [Tetraodon nigroviridis]
Length = 335
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 189/327 (57%), Gaps = 3/327 (0%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A++ + ++PWVEKYRP K+ D++ + D ++ + + +P+L+ GPPGTGKT+
Sbjct: 3 ATTKAPLQTRNLPWVEKYRPQKLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGKTS 62
Query: 62 SILALAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
+ILA A +L + V+ELNASDDRGIDVVR I FA + G K+V+LDEA
Sbjct: 63 TILACARQLYRDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKG-FKLVILDEA 121
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D+MT AQ ALRR +E ++ +TRF L CN SKII +QSRC RF LS ++++ RL
Sbjct: 122 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMVPRLE 181
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
V+Q+E + P+G++AI+ + GDMR++LN LQ+T + V ++ V+ P +
Sbjct: 182 HVIQQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDTVYTCTGHPLRSDI 241
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGF 299
N++ L F A + +L L G + DI+T + +I + ++++ + +
Sbjct: 242 ANILDWALNKDFTTAYRQILELKTLKGLALHDILTEVHLLIHRVDFPPNIRIGLLIKLAD 301
Query: 300 AHMRICDGVGSYLQLCGLLAKLSIVRE 326
R+ G +QL ++A VR+
Sbjct: 302 VEHRLASGTDEKIQLSSMVAAFQAVRD 328
>gi|410976710|ref|XP_003994756.1| PREDICTED: replication factor C subunit 5 [Felis catus]
Length = 340
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 183/317 (57%), Gaps = 3/317 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA A +L
Sbjct: 19 NLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLY 78
Query: 72 -GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT AQ A
Sbjct: 79 KDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNA 137
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+EEKV
Sbjct: 138 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDI 197
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++ +L
Sbjct: 198 SEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQ 257
Query: 251 KFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
F A + +L L G + DI+T + + + +++ + + R+ G
Sbjct: 258 DFTTAYRNITELKTLKGLALQDILTEIHLFVHRVDFPSSVRVHLLTKMADIEYRLSVGTN 317
Query: 310 SYLQLCGLLAKLSIVRE 326
+QL L+A + R+
Sbjct: 318 EKIQLSSLIAAFQVTRD 334
>gi|194042984|ref|XP_001926304.1| PREDICTED: replication factor C subunit 5 [Sus scrofa]
Length = 340
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 121/317 (38%), Positives = 183/317 (57%), Gaps = 3/317 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA A +L
Sbjct: 19 NLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLY 78
Query: 72 -GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT AQ A
Sbjct: 79 KDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNA 137
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+EEKV
Sbjct: 138 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDI 197
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G++A+I + GDMR+ALN LQ+T F V +E V+ P + N++ +L
Sbjct: 198 SEDGMKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQ 257
Query: 251 KFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
F A + +L L G + DI+T + + + +++ + + R+ G
Sbjct: 258 DFTTAYRNIMELKTLKGLALNDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTN 317
Query: 310 SYLQLCGLLAKLSIVRE 326
+QL L+A + R+
Sbjct: 318 EKIQLSSLIAAFQVTRD 334
>gi|296213044|ref|XP_002753107.1| PREDICTED: replication factor C subunit 5 [Callithrix jacchus]
gi|403281561|ref|XP_003932252.1| PREDICTED: replication factor C subunit 5 [Saimiri boliviensis
boliviensis]
Length = 340
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 183/317 (57%), Gaps = 3/317 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA A +L
Sbjct: 19 NLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLY 78
Query: 72 -GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT AQ A
Sbjct: 79 KDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNA 137
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+EEKV
Sbjct: 138 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDI 197
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++ +L
Sbjct: 198 SEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQ 257
Query: 251 KFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
F A + +L L G + DI+T + + + +++ + + R+ G
Sbjct: 258 DFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTN 317
Query: 310 SYLQLCGLLAKLSIVRE 326
+QL L+A + R+
Sbjct: 318 EKIQLSSLIAAFQVTRD 334
>gi|410210156|gb|JAA02297.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410251550|gb|JAA13742.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410296138|gb|JAA26669.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410333015|gb|JAA35454.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
Length = 340
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 186/323 (57%), Gaps = 3/323 (0%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
+++ ++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA
Sbjct: 13 AATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILA 72
Query: 66 LAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
A +L + V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT
Sbjct: 73 CAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMT 131
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+
Sbjct: 132 QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVE 191
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EEKV +G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++
Sbjct: 192 EEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANIL 251
Query: 245 RNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
+L F A + +L L G + DI+T + + + +++ + + R
Sbjct: 252 DWMLNRDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYR 311
Query: 304 ICDGVGSYLQLCGLLAKLSIVRE 326
+ G +QL L+A + R+
Sbjct: 312 LSVGTNEKIQLSSLIAAFQVTRD 334
>gi|340369406|ref|XP_003383239.1| PREDICTED: replication factor C subunit 4-like [Amphimedon
queenslandica]
Length = 363
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 126/312 (40%), Positives = 182/312 (58%), Gaps = 10/312 (3%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP V D+V + V+ L + PNL+ GPPGTGKT++ILA+AHEL G
Sbjct: 37 VPWVEKYRPKVVDDVVHQDEVVSVLKKTLTGSDFPNLLFYGPPGTGKTSAILAIAHELFG 96
Query: 73 PN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTL--PPGK----HKVVVLDEADSMTA 125
+ Y+ ++ELNASDDRGI V+R+K+K FA+ + P GK K+V+LDEADSMT
Sbjct: 97 RDLYKSRILELNASDDRGIQVIRDKVKSFARHSASASRPDGKPCPSFKIVILDEADSMTQ 156
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME S STRF L CN S+IIEP+ SRC+ RF LS + +RL + +E
Sbjct: 157 AAQAALRRTMEKESTSTRFCLICNYISRIIEPLTSRCSKFRFKPLSSAILRTRLEYICRE 216
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATY--SGFRFVNQENVFKVCDQPHPLHVKNM 243
E V + ++ II T+DGDMR+A+ LQ+ Y G V ++++ ++ ++ +
Sbjct: 217 ENVKCNEKAIDRIIETSDGDMRKAITFLQSGYRLKGDEEVTEKDIMEIAGVVPQSLIEGL 276
Query: 244 VRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFMKEAGFAHM 302
++ +D + +K G+ I+ L II + E+ + K ++
Sbjct: 277 LKTCSSNSYDQLETAVKNFVAEGFPAVQIMNQLNDVIITHCELNDLQKSAICEQMAVVDR 336
Query: 303 RICDGVGSYLQL 314
R+ DG YLQL
Sbjct: 337 RLSDGADEYLQL 348
>gi|62087564|dbj|BAD92229.1| replication factor C 5 isoform 1 variant [Homo sapiens]
Length = 351
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 120/322 (37%), Positives = 185/322 (57%), Gaps = 4/322 (1%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
+++ ++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA
Sbjct: 27 AATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILA 86
Query: 66 LAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
A +L + V+ELNASDDRGID++R I FA + G K+V+LDEAD+MT
Sbjct: 87 CAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILDEADAMT 145
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+
Sbjct: 146 QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVE 205
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EEKV +G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++
Sbjct: 206 EEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANIL 265
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRI 304
+L F A LK L G + DI+T + + + +++ + + R+
Sbjct: 266 DWMLNQDFTTAYRKLKTLK--GLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRL 323
Query: 305 CDGVGSYLQLCGLLAKLSIVRE 326
G +QL L+A + R+
Sbjct: 324 SVGTNEKIQLSSLIAAFQVTRD 345
>gi|390600120|gb|EIN09515.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 354
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 178/312 (57%), Gaps = 7/312 (2%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D+V + D + + +P+L+ GPPGTGKT++ILA+A +
Sbjct: 35 NLPWVEKYRPVTLDDVVSHKDITCTIENFIQKNRLPHLLFYGPPGTGKTSTILAVARRIY 94
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G ++R+ ++ELNASDDRGIDVVR +IK FA+ + G +K+++LDEAD MT AQ AL
Sbjct: 95 GDDFRKQILELNASDDRGIDVVREQIKQFAETRTLFSKG-YKLIILDEADMMTQAAQAAL 153
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR +E Y+ + RF + CN +KI IQSRC RFS L E+ R+ VV E V
Sbjct: 154 RRVIEQYTKNVRFCIICNYVNKITPAIQSRCTRFRFSPLPIPEVERRVQTVVDAEGVQLR 213
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+G +A++ + GDMR+ALN LQA ++ + + + ++ PHP ++ +V ++L +
Sbjct: 214 EDGKKALLKLSKGDMRRALNVLQACHAAYDEIGETEIYNCTGNPHPSDIETIVNSMLADE 273
Query: 252 F----DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDG 307
F + LK + G + D++ F I+ E+ H + + R+ G
Sbjct: 274 FTTSYQSVINALKT--ERGLALQDLLAGAFDYIETIELKPHARAYLLDHLATTEYRLSTG 331
Query: 308 VGSYLQLCGLLA 319
+QL LL
Sbjct: 332 GSEKIQLTALLG 343
>gi|449464168|ref|XP_004149801.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
gi|449499057|ref|XP_004160708.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
Length = 363
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 120/328 (36%), Positives = 190/328 (57%), Gaps = 3/328 (0%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+AS +++ IPWVEK+RP + D+ + D V + + + +P+L+L GPPGTGKT
Sbjct: 28 VASPAAAPEGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKT 87
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH--KVVVLD 118
++ILA+A +L G NY ++ELNASDDRGIDVVR +I+ FA + K K+V+LD
Sbjct: 88 STILAVARKLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLD 147
Query: 119 EADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSR 178
EAD+MT AQ ALRR +E Y+ +TRFAL CN +KII +QSRC RF+ L + + R
Sbjct: 148 EADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTER 207
Query: 179 LMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPL 238
L V++ E++ GL A++ GDMR+ALN LQ+T+ + + +E V+ P P
Sbjct: 208 LRYVIEAERLDVTEGGLAALVRLCTGDMRKALNILQSTHMASQHITEEAVYLCTGNPMPK 267
Query: 239 HVKNMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
++ + +L F D+ + ++ G + DI+ + + EM +++++ + +
Sbjct: 268 DIEQISFWLLNEPFSDSFKRISEIKTRKGLALVDIVREVTLFVFKIEMPSNIRVQLINDL 327
Query: 298 GFAHMRICDGVGSYLQLCGLLAKLSIVR 325
R+ G LQL L++ + R
Sbjct: 328 ADIEYRMTFGCNDKLQLGSLISSFTGAR 355
>gi|348584884|ref|XP_003478202.1| PREDICTED: replication factor C subunit 5-like isoform 2 [Cavia
porcellus]
Length = 337
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 182/316 (57%), Gaps = 4/316 (1%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA A +L
Sbjct: 19 NLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLY 78
Query: 72 -GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT AQ A
Sbjct: 79 KDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNA 137
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+EEKV
Sbjct: 138 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVKEEKVDI 197
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++ +L
Sbjct: 198 SEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQ 257
Query: 251 KFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
F A LK L G + DI+T + + + +++ + + R+ G
Sbjct: 258 DFTTAYRKLKTLK--GLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSE 315
Query: 311 YLQLCGLLAKLSIVRE 326
+QL L+A + R+
Sbjct: 316 KIQLSSLIAAFQVTRD 331
>gi|332164786|ref|NP_001193730.1| replication factor C subunit 5 isoform 4 [Homo sapiens]
gi|208967278|dbj|BAG73653.1| replication factor C [synthetic construct]
Length = 337
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 120/322 (37%), Positives = 185/322 (57%), Gaps = 4/322 (1%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
+++ ++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA
Sbjct: 13 AATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILA 72
Query: 66 LAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
A +L + V+ELNASDDRGID++R I FA + G K+V+LDEAD+MT
Sbjct: 73 CAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILDEADAMT 131
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+
Sbjct: 132 QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVE 191
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EEKV +G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++
Sbjct: 192 EEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANIL 251
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRI 304
+L F A LK L G + DI+T + + + +++ + + R+
Sbjct: 252 DWMLNQDFTTAYRKLKTLK--GLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRL 309
Query: 305 CDGVGSYLQLCGLLAKLSIVRE 326
G +QL L+A + R+
Sbjct: 310 SVGTNEKIQLSSLIAAFQVTRD 331
>gi|114647195|ref|XP_001156572.1| PREDICTED: replication factor C subunit 5 isoform 5 [Pan
troglodytes]
Length = 340
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 186/323 (57%), Gaps = 3/323 (0%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
+++ ++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA
Sbjct: 13 AATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILA 72
Query: 66 LAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
A +L + V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT
Sbjct: 73 CAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMT 131
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+
Sbjct: 132 QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVE 191
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EEKV +G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++
Sbjct: 192 EEKVGISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANIL 251
Query: 245 RNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
+L F A + +L L G + DI+T + + + +++ + + R
Sbjct: 252 DWMLNRDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYR 311
Query: 304 ICDGVGSYLQLCGLLAKLSIVRE 326
+ G +QL L+A + R+
Sbjct: 312 LSVGTNEKIQLSSLIAAFQVTRD 334
>gi|6677723|ref|NP_031396.1| replication factor C subunit 5 isoform 1 [Homo sapiens]
gi|728777|sp|P40937.1|RFC5_HUMAN RecName: Full=Replication factor C subunit 5; AltName:
Full=Activator 1 36 kDa subunit; Short=A1 36 kDa
subunit; AltName: Full=Activator 1 subunit 5; AltName:
Full=Replication factor C 36 kDa subunit; Short=RF-C 36
kDa subunit; Short=RFC36
gi|1498257|gb|AAB09784.1| replication factor C, 36-kDa subunit [Homo sapiens]
gi|12804841|gb|AAH01866.1| Replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|15530326|gb|AAH13961.1| Replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|29124997|gb|AAO63493.1| replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|312151544|gb|ADQ32284.1| replication factor C (activator 1) 5, 36.5kDa [synthetic construct]
Length = 340
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 119/323 (36%), Positives = 186/323 (57%), Gaps = 3/323 (0%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
+++ ++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA
Sbjct: 13 AATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILA 72
Query: 66 LAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
A +L + V+ELNASDDRGID++R I FA + G K+V+LDEAD+MT
Sbjct: 73 CAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILDEADAMT 131
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+
Sbjct: 132 QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVE 191
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EEKV +G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++
Sbjct: 192 EEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANIL 251
Query: 245 RNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
+L F A + +L L G + DI+T + + + +++ + + R
Sbjct: 252 DWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYR 311
Query: 304 ICDGVGSYLQLCGLLAKLSIVRE 326
+ G +QL L+A + R+
Sbjct: 312 LSVGTNEKIQLSSLIAAFQVTRD 334
>gi|395514036|ref|XP_003761227.1| PREDICTED: replication factor C subunit 5 [Sarcophilus harrisii]
Length = 343
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 120/321 (37%), Positives = 185/321 (57%), Gaps = 3/321 (0%)
Query: 8 SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
+ + ++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA A
Sbjct: 18 TKSRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACA 77
Query: 68 HELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG 126
+L + V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT
Sbjct: 78 KQLYKDKEFNSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQD 136
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQ ALRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL V++EE
Sbjct: 137 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIEEE 196
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
KV +G++A+I + GDMR+ALN LQ+T F V +E V+ P + N++
Sbjct: 197 KVDISEDGMKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDW 256
Query: 247 VLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
+L F A + +L L G + DI+T + + + +++ + + R+
Sbjct: 257 MLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPPAVRIHLLIKMADIEHRLA 316
Query: 306 DGVGSYLQLCGLLAKLSIVRE 326
G +QL L+A + R+
Sbjct: 317 VGTSEKIQLSSLIAAFQVTRD 337
>gi|432872493|ref|XP_004072116.1| PREDICTED: replication factor C subunit 5-like [Oryzias latipes]
Length = 340
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 127/335 (37%), Positives = 192/335 (57%), Gaps = 11/335 (3%)
Query: 1 MASSSSSS-SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
MAS+S + + ++PWVEKYRP K+ D++ + D ++ + R+ +P+L+L GPPGTGK
Sbjct: 1 MASTSRTPLQSRNLPWVEKYRPQKLDDLISHRDILSTIQRFVREDRLPHLLLYGPPGTGK 60
Query: 60 TTSILALAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLD 118
T++ILA A +L + V+ELNASDDRGIDVVR I FA + G K+V+LD
Sbjct: 61 TSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKG-FKLVILD 119
Query: 119 EADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSR 178
EAD+MT AQ ALRR +E ++ +TRF L CN SKII +QSRC RF LS ++++ R
Sbjct: 120 EADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSADQMIPR 179
Query: 179 LMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPL 238
L V+QEE + +G++AI+ + GDMR++LN LQ+T + V +++V+ QP
Sbjct: 180 LRHVIQEESIDITEDGMKAIVTLSSGDMRRSLNVLQSTSMAYGKVTEDSVYTCTGQPLRS 239
Query: 239 HVKNMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
+ N++ L F A + QL L G + DI+T L ++ + + +
Sbjct: 240 DIANILDWCLNKDFTSAYKQILQLKTLKGLALHDILTELHLLVHRVDFPPATRXXXXYKC 299
Query: 298 G------FAHMRICDGVGSYLQLCGLLAKLSIVRE 326
F H R+ G +QL ++ VR+
Sbjct: 300 ADASFFTFRH-RLASGTDEKIQLSSMVGAFQEVRD 333
>gi|158254806|dbj|BAF83374.1| unnamed protein product [Homo sapiens]
Length = 340
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 119/323 (36%), Positives = 186/323 (57%), Gaps = 3/323 (0%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
+++ ++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA
Sbjct: 13 AATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILA 72
Query: 66 LAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
A +L + V+ELNASDDRGID++R I FA + G K+V+LDEAD+MT
Sbjct: 73 CAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILDEADAMT 131
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+
Sbjct: 132 QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVE 191
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EEKV +G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++
Sbjct: 192 EEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANIL 251
Query: 245 RNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
+L F A + +L L G + DI+T + + + +++ + + R
Sbjct: 252 DWMLNQDFATAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYR 311
Query: 304 ICDGVGSYLQLCGLLAKLSIVRE 326
+ G +QL L+A + R+
Sbjct: 312 LSVGTNEKIQLSSLIAAFQVTRD 334
>gi|348584882|ref|XP_003478201.1| PREDICTED: replication factor C subunit 5-like isoform 1 [Cavia
porcellus]
Length = 340
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 183/317 (57%), Gaps = 3/317 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA A +L
Sbjct: 19 NLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLY 78
Query: 72 -GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT AQ A
Sbjct: 79 KDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNA 137
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+EEKV
Sbjct: 138 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVKEEKVDI 197
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++ +L
Sbjct: 198 SEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQ 257
Query: 251 KFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
F A + +L L G + DI+T + + + +++ + + R+ G
Sbjct: 258 DFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTS 317
Query: 310 SYLQLCGLLAKLSIVRE 326
+QL L+A + R+
Sbjct: 318 EKIQLSSLIAAFQVTRD 334
>gi|430814133|emb|CCJ28598.1| unnamed protein product [Pneumocystis jirovecii]
Length = 350
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 116/319 (36%), Positives = 186/319 (58%), Gaps = 11/319 (3%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
S + +PWVEKYRP + +IV + D + + + +P+L+ GPPGTGKT++I
Sbjct: 30 SDTKHDGSTLPWVEKYRPEDLKEIVSHQDIILTIEEFIKKNRIPHLLFYGPPGTGKTSTI 89
Query: 64 LALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM 123
LA A ++ GP +R ++ELNASD+RGIDVVR +IK FA K G K+V+LDEAD+M
Sbjct: 90 LACAKKIYGPKFRNQLLELNASDERGIDVVREQIKNFASTKQIFNSG-FKLVILDEADAM 148
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T AQ ALRR +E Y+ + RF + CN +KI IQSRC RF LS +EI +L V+
Sbjct: 149 TLAAQNALRRVIEKYTKNVRFCIICNYVNKISLAIQSRCTRFRFQPLSSKEICLKLDYVI 208
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
+ E + +G ++ ADGDMR+ LN LQA ++ + F++++ V+ PHP ++ +
Sbjct: 209 KNENINISEKGKAELVKLADGDMRKGLNILQACHAAYDFIDEDAVYNCVGNPHPEIIELI 268
Query: 244 VRNVLEGKFDDACSG-LKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHM 302
V+++ +F + +K + G + DIIT ++ ++ E+ +L+ +
Sbjct: 269 VKSLFNDEFLICLNTIIKVKTERGLALLDIITGVYEVLDELELPINLQYRY--------- 319
Query: 303 RICDGVGSYLQLCGLLAKL 321
R+ +G +QL ++ +
Sbjct: 320 RLSNGASEKIQLSAMIGTI 338
>gi|348582722|ref|XP_003477125.1| PREDICTED: replication factor C subunit 4-like [Cavia porcellus]
Length = 363
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 191/332 (57%), Gaps = 14/332 (4%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS + A IPWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 26 GSSGENKKAKPIPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 85
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP+ +R V+ELNASD+RGI VVR K+K FAQ V+ PP
Sbjct: 86 TILAAARELFGPDLFRSRVLELNASDERGIQVVREKVKNFAQLAVSGSRSDGKPCPP--F 143
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD
Sbjct: 144 KIVILDEADSMTSAAQAALRRTMEKESKATRFCLICNYVSRIIEPLTSRCSKFRFKPLSD 203
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFK 230
+ RL+ + ++E V EG+E ++ ++GD+R+A+ LQ+ +G + V ++ +
Sbjct: 204 KIQQQRLLDIAEKENVKISNEGIEYLVKVSEGDLRKAITFLQSATRLTGGKEVMEKVITD 263
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLF-RIIKNYEMAEHL 289
+ + + G FD + +K L + G++ T +++ L +++N +++
Sbjct: 264 IAGVIPAETIGGIFAACKSGSFDKLEAAVKDLINEGHAATQLVSQLHDAVVENDNLSDKQ 323
Query: 290 KLEFMKEAGFAHMRICDGVGSYLQLCGLLAKL 321
K ++ + DG YLQL L A L
Sbjct: 324 KSIITEKLAEVDKCLTDGADEYLQLISLCATL 355
>gi|18976465|ref|NP_577822.1| replication factor C small subunit [Pyrococcus furiosus DSM 3638]
gi|397652193|ref|YP_006492774.1| replication factor C small subunit [Pyrococcus furiosus COM1]
gi|42559506|sp|Q8U4J3.1|RFCS_PYRFU RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=PfuRFC small subunit; Contains: RecName:
Full=Pfu RFC intein
gi|18892004|gb|AAL80217.1| replication factor C, small subunit [Pyrococcus furiosus DSM 3638]
gi|393189784|gb|AFN04482.1| replication factor C small subunit [Pyrococcus furiosus COM1]
Length = 852
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 121/284 (42%), Positives = 176/284 (61%), Gaps = 13/284 (4%)
Query: 44 GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQK 103
GNMP ++ TT+ LALA EL G N+R +ELNASD+RGI+V+R K+K FA+
Sbjct: 576 GNMPTVV-------HNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFART 628
Query: 104 KVTLPPG--KHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSR 161
K P G K++ LDEAD++T AQQALRRTME++S++ RF L+CN SSKIIEPIQSR
Sbjct: 629 K---PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 685
Query: 162 CAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFR 221
CAI RF L DE+I RL + + E + EGL+AI++ A+GDMR+A+N LQA + +
Sbjct: 686 CAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDK 745
Query: 222 FVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRII 280
+ ENVF V + P ++ M+ L+G F A L++ L G S D++ + + +
Sbjct: 746 KITDENVFMVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEV 805
Query: 281 KNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324
N + E K+ + G + R+ +G +QL LLA+ +++
Sbjct: 806 FNLPIEEPKKVLLADKIGEYNFRLVEGANEIIQLEALLAQFTLI 849
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 32/46 (69%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
PWVEKYRP ++ DIVG V RL + G+MP+L+ AGPPG GK
Sbjct: 14 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGK 59
>gi|281209849|gb|EFA84017.1| replication factor C subunit [Polysphondylium pallidum PN500]
Length = 357
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 129/329 (39%), Positives = 190/329 (57%), Gaps = 15/329 (4%)
Query: 1 MASSSSSSSAYDI--PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTG 58
M+ S++ ++ Y PWV KYRP V ++ + V L GN+P+L+ GPPGTG
Sbjct: 1 MSKSTNQNTPYRPVEPWVNKYRPKTVDEVSHQDEVVKALKRSLETGNLPHLLFYGPPGTG 60
Query: 59 KTTSILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKV----TLPPGK-- 111
KT++ILA+A +L GP Y++ V+ELNASD+RGI+VVR KIK FA V TL GK
Sbjct: 61 KTSTILAVAMDLFGPELYKDRVLELNASDERGIEVVRTKIKNFASFSVSQNNTLTNGKPA 120
Query: 112 --HKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSR 169
K++VLDEADSMT AQ ALRR +E S +TRF L CN ++IIEP+ SRCA RF
Sbjct: 121 AAFKLIVLDEADSMTHDAQAALRRIIEYTSKTTRFCLLCNYITRIIEPLSSRCAKFRFKS 180
Query: 170 LSDEEILSRLMVVVQEEKVPYVP-EGLEAIIFTADGDMRQALNNLQATYS--GFRFVNQE 226
L+D ++ RL + E +P V E +AI +DGD+R+A+ LQ++Y G R + +
Sbjct: 181 LNDTAMIERLRYIASSESMPPVKDEVYQAIHAVSDGDLRKAITYLQSSYRFYGSRELTPD 240
Query: 227 NVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-M 285
N++ + P ++ ++ +D S L+QL GY + I+ +F + N++
Sbjct: 241 NIYNISGTVPPKLIETLINTCKSNSYDKLQSNLQQLVTKGYPASQILVQIFDQVTNHKSF 300
Query: 286 AEHLKLEFMKEAGFAHMRICDGVGSYLQL 314
++ K + G + DG +LQL
Sbjct: 301 SDKQKALIAMKIGDVDRNLVDGSEEFLQL 329
>gi|301768619|ref|XP_002919725.1| PREDICTED: replication factor C subunit 5-like [Ailuropoda
melanoleuca]
Length = 340
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 182/317 (57%), Gaps = 3/317 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA A +L
Sbjct: 19 NLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLY 78
Query: 72 -GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT AQ A
Sbjct: 79 KDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNA 137
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL V++EEKV
Sbjct: 138 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIKEEKVDL 197
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G++A++ A GDMR+ALN LQ+T F V +E V+ P + N++ +L
Sbjct: 198 SEDGMKALVTLASGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQ 257
Query: 251 KFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
F A + +L L G + DI+T + + +++ + + R+ G
Sbjct: 258 DFTTAYRNITELKTLKGLALHDILTETHLFVHRVDFPSSVRVHLLTKMADIEYRLSVGTN 317
Query: 310 SYLQLCGLLAKLSIVRE 326
+QL L+A + R+
Sbjct: 318 EKIQLSSLIAAFQVTRD 334
>gi|348533450|ref|XP_003454218.1| PREDICTED: replication factor C subunit 5-like [Oreochromis
niloticus]
Length = 335
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 120/329 (36%), Positives = 189/329 (57%), Gaps = 4/329 (1%)
Query: 1 MASSSSSS-SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
MAS+S + ++PWVEKYRP + D++ + D ++ + + +P+L+ GPPGTGK
Sbjct: 1 MASTSKAPLQTRNLPWVEKYRPQTLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGK 60
Query: 60 TTSILALAHELLG-PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLD 118
T++ILA A +L + V+ELNASDDRGIDVVR I FA + G K+V+LD
Sbjct: 61 TSTILACARQLYKEKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKG-FKLVILD 119
Query: 119 EADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSR 178
EAD+MT AQ ALRR +E ++ +TRF L CN SKII +QSRC RF LS ++++ R
Sbjct: 120 EADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPR 179
Query: 179 LMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPL 238
L V+Q+E + P+G++ I+ + GDMR++LN LQ+T + V ++ V+ P
Sbjct: 180 LEHVIQQENIDITPDGMKGIVTLSTGDMRRSLNILQSTSMAYGKVTEDTVYTCTGHPLRS 239
Query: 239 HVKNMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
+ N++ L F A + + +L L G + DI+T + ++ + +++ + +
Sbjct: 240 DIANILDWCLNKDFTSAYNQILELKTLKGLALHDILTEVHLLVHRVDFPPAIRISLLIKL 299
Query: 298 GFAHMRICDGVGSYLQLCGLLAKLSIVRE 326
R+ G +QL ++A VRE
Sbjct: 300 ADVEHRLASGTSEKIQLSSMVAAFQAVRE 328
>gi|351694763|gb|EHA97681.1| Replication factor C subunit 5 [Heterocephalus glaber]
Length = 340
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 119/323 (36%), Positives = 186/323 (57%), Gaps = 3/323 (0%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
+++ ++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA
Sbjct: 13 ATAKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILA 72
Query: 66 LAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
A +L + V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT
Sbjct: 73 CAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMT 131
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL V++
Sbjct: 132 QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIK 191
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EEKV +G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++
Sbjct: 192 EEKVDVSEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANIL 251
Query: 245 RNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
+L F A + +L L G + DI+T + + + +++ + + R
Sbjct: 252 DWMLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYR 311
Query: 304 ICDGVGSYLQLCGLLAKLSIVRE 326
+ G +QL L+A + R+
Sbjct: 312 LSVGTSEKIQLSSLIAAFQVTRD 334
>gi|261402851|ref|YP_003247075.1| replication factor C [Methanocaldococcus vulcanius M7]
gi|261369844|gb|ACX72593.1| Replication factor C [Methanocaldococcus vulcanius M7]
Length = 544
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 123/284 (43%), Positives = 174/284 (61%), Gaps = 13/284 (4%)
Query: 44 GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQK 103
GN+P ++ TT+ L LA +L G N+R+ +ELNASD+RGIDV+R K+K FA+
Sbjct: 269 GNLPTIL-------HNTTAALCLARDLFGENWRDNFLELNASDERGIDVIRTKVKDFART 321
Query: 104 KVTLPPGK--HKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSR 161
K P G K++ LDE+D++TA AQ ALRRTME YS+ RF L+CN SKII PIQSR
Sbjct: 322 K---PIGDVPFKIIFLDESDALTADAQNALRRTMEKYSDVARFILSCNYPSKIIPPIQSR 378
Query: 162 CAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFR 221
CAI RFS L E+I +L + ++E + GL+AII+ ++GDMR+A+N LQ +
Sbjct: 379 CAIFRFSPLKKEDIAKKLKEIAEKEGLNLTESGLDAIIYVSEGDMRKAINVLQTAAALSD 438
Query: 222 FVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGL-KQLYDLGYSPTDIITTLFRII 280
++ E V+KV + P VK M+ L GKF +A L K + + G S DI+ +FR I
Sbjct: 439 VIDDEIVYKVSSRARPEEVKKMMELALNGKFIEARDLLYKLMVEWGMSGEDILNQMFREI 498
Query: 281 KNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324
N ++ E K+E G RI +G +QL LLAK++++
Sbjct: 499 NNLDIDERKKVELADAIGETDFRIVEGANERIQLSALLAKMALM 542
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
PWVEKYRP + DIVG + V RL +MP+L+ +GPPG GK
Sbjct: 4 PWVEKYRPKTLDDIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGK 49
>gi|392590080|gb|EIW79410.1| DNA replication factor [Coniophora puteana RWD-64-598 SS2]
Length = 345
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 113/308 (36%), Positives = 177/308 (57%), Gaps = 2/308 (0%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + D+ + D + +P+L+ GPPGTGKT++ILA+A + G
Sbjct: 29 LPWVEKYRPVTLDDVKSHKDITTTIERFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYG 88
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
YR+ ++ELNASDDRGIDVVR +IK FA+ + TL +K+++LDEAD MT AQ ALR
Sbjct: 89 SEYRKQILELNASDDRGIDVVREQIKQFAETR-TLFAKSYKLIILDEADMMTQQAQAALR 147
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R +E Y+ + RF + CN +KI IQSRC RFS L E+ ++ VV+ E
Sbjct: 148 RVIEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPMAEVEKQIDHVVEAEDCKVTK 207
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+G EA++ + GDMR+ALN LQA ++ + + + V+ PHP ++++V ++L +F
Sbjct: 208 DGKEALLKLSKGDMRRALNVLQACHAAYDSIGETEVYNCTGNPHPRDIESIVNSMLSDEF 267
Query: 253 DDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
+ + Q+ + G + D+++ F + E+ ++ + R+ G
Sbjct: 268 TTSYQMINQMKTERGLALQDLLSGAFEYVDTLELKPQARVYLLDYLATIEYRLSTGASEK 327
Query: 312 LQLCGLLA 319
+QL LL
Sbjct: 328 IQLSALLG 335
>gi|344295239|ref|XP_003419321.1| PREDICTED: replication factor C subunit 5 [Loxodonta africana]
Length = 343
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 120/326 (36%), Positives = 187/326 (57%), Gaps = 6/326 (1%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
S++ + ++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA
Sbjct: 13 SAAKSRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILA 72
Query: 66 LAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
A +L + V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT
Sbjct: 73 CAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMT 131
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+
Sbjct: 132 QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVE 191
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EEKV +G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++
Sbjct: 192 EEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANIL 251
Query: 245 RNVLEGKFDDACSGLKQLYDL----GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
+L F A + + +L G + DI+T + + + +++ + +
Sbjct: 252 EWMLNQDFTTAYRNILYIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLIKMADI 311
Query: 301 HMRICDGVGSYLQLCGLLAKLSIVRE 326
R+ G +QL L+A + R+
Sbjct: 312 EYRLSLGTNEKIQLSSLIAAFQVTRD 337
>gi|328859221|gb|EGG08331.1| hypothetical protein MELLADRAFT_47841 [Melampsora larici-populina
98AG31]
Length = 346
Score = 220 bits (560), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 114/329 (34%), Positives = 191/329 (58%), Gaps = 4/329 (1%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+ S + S ++PWVEKYRP+ + ++V + D + + +P+L+ GPPGTGKT
Sbjct: 13 IQSETEKSQKDNLPWVEKYRPSTLEEVVSHKDIIYTIQKFITSNRLPHLLFYGPPGTGKT 72
Query: 61 TSILALAHELLGP--NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLD 118
++ILA+A +L +++ V+ELNASDDRGI+VVR +IK FA ++ G K+++LD
Sbjct: 73 STILAIARQLYQTPMSFKNNVLELNASDDRGIEVVREQIKNFASARMVFSSG-FKLIILD 131
Query: 119 EADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSR 178
EAD MT AQ ALRR +E Y+ + RF + CN ++I IQSRC RF L E+ R
Sbjct: 132 EADQMTTTAQSALRRVIEQYTKNVRFCIICNYVNRISPAIQSRCTKFRFGPLDLPEVDRR 191
Query: 179 LMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPL 238
+ V+ E + +G +A++ GDMR+ LN +QA +SG+ V++++V++ PHP
Sbjct: 192 VGQVIDSENLVVTEDGRKALLNLCKGDMRRVLNVMQACHSGYGKVDEDSVYECTGSPHPK 251
Query: 239 HVKNMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
++++V++++ +F + ++ + + G + DII ++ +K E+ ++ + +
Sbjct: 252 QIEDIVKSMMNEEFQTSFKRIQDIKVNFGLALQDIILGIYEFLKTVELGNLAQIYLLDQL 311
Query: 298 GFAHMRICDGVGSYLQLCGLLAKLSIVRE 326
R+ G LQL GLL I E
Sbjct: 312 SQIEYRLSTGGSEKLQLSGLLGCFKIAVE 340
>gi|14590058|ref|NP_142122.1| replication factor C small subunit [Pyrococcus horikoshii OT3]
gi|42559333|sp|O57852.1|RFCS_PYRHO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
Contains: RecName: Full=Pho RFC intein
gi|3256498|dbj|BAA29181.1| 855aa long hypothetical replication factor C subunit [Pyrococcus
horikoshii OT3]
Length = 855
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 121/284 (42%), Positives = 176/284 (61%), Gaps = 13/284 (4%)
Query: 44 GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQK 103
GNMP ++ TT+ LAL+ EL G N+R +ELNASD+RGI+V+R K+K FA+
Sbjct: 578 GNMPTVV-------HNTTAALALSRELFGENWRHNFLELNASDERGINVIREKVKEFART 630
Query: 104 KVTLPPG--KHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSR 161
K P G K++ LDEAD++T AQQALRRTME++S++ RF L+CN SSKIIEPIQSR
Sbjct: 631 K---PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 687
Query: 162 CAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFR 221
CAI RF L DE+I RL + + E + EGL+AI++ A+GDMR+A+N LQA + +
Sbjct: 688 CAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDK 747
Query: 222 FVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRII 280
+ ENVF V + P ++ M+ L+G F A L++ L G S D++ + + +
Sbjct: 748 KITDENVFMVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLIQMHKEV 807
Query: 281 KNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324
N + E K+ + G + R+ +G +QL LLA+ ++V
Sbjct: 808 FNLPIDEPTKVYLADKIGEYNFRLVEGANEMIQLEALLAQFTLV 851
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
PWVEKYRP ++ +IVG V RL + G+MP+L+ AGPPG GK
Sbjct: 16 PWVEKYRPQRLDEIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGK 61
>gi|300122519|emb|CBK23089.2| unnamed protein product [Blastocystis hominis]
Length = 341
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 123/314 (39%), Positives = 187/314 (59%), Gaps = 2/314 (0%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRPT + +IV D VA + +P+L+ GPPGTGKTT+I+A+A L G
Sbjct: 21 LPWVEKYRPTSLDNIVSQDDIVATIKRFIEGNRLPHLLFYGPPGTGKTTTIMAVAKMLYG 80
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
++ V+ELNASDDRGI+VVR +IK+FA K G K+V+LDEAD+MT AQ ALR
Sbjct: 81 SSHSSMVLELNASDDRGINVVREQIKVFAGTKKLFHTGV-KLVILDEADNMTNAAQFALR 139
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R +E YS +TRF L CN S+II +QSRC RF L+ + I SRL+ ++++E V +
Sbjct: 140 RIIEKYSQNTRFCLICNYVSEIIPAVQSRCTRFRFQPLNPQLIRSRLLYILRQENVEFDD 199
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+G+ A++ + GDMR+ +N LQAT F V E+V++ P P ++ ++ +++ +
Sbjct: 200 DGVAALLALSRGDMRRVINVLQATAMAFGKVTAEHVYRCAGMPSPADMELVLSSLMAKSY 259
Query: 253 DDACSGLKQLYDLG-YSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
DA L++L ++ +DI+T L ++ + +E +R+ G
Sbjct: 260 GDALKTLEELQRKKMFAMSDILTELVGKLQEVSFPPAVDAFLYRELADLEVRLNAGTQEE 319
Query: 312 LQLCGLLAKLSIVR 325
+QL L+ + VR
Sbjct: 320 IQLRSLVGIFTKVR 333
>gi|162312520|ref|XP_001713099.1| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces
pombe 972h-]
gi|13431787|sp|O14003.2|RFC3_SCHPO RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3
gi|4468733|emb|CAB38106.1| replication factor C subunit [Schizosaccharomyces pombe]
gi|5688939|dbj|BAA82745.1| Rfc3 [Schizosaccharomyces pombe]
gi|5688941|dbj|BAA82746.1| Rfc3 [Schizosaccharomyces pombe]
gi|159884003|emb|CAB39134.2| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces
pombe]
Length = 342
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/312 (36%), Positives = 178/312 (57%), Gaps = 6/312 (1%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + D+V + D ++ L +P+++ GPPGTGKT++ILA A ++ G
Sbjct: 23 LPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYG 82
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
PNYR +MELNASDDRGID VR +IK FA + K+++LDEAD+MT AQ ALR
Sbjct: 83 PNYRNQLMELNASDDRGIDAVREQIKNFASTRQIF-ASTFKMIILDEADAMTLAAQNALR 141
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R +E Y+ + RF + CN +KI IQSRC RF L +EI + V+Q E P
Sbjct: 142 RVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNIDP 201
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+ A++ + GDMR+ALN LQA ++ + ++ ++ PHP + +++++ +F
Sbjct: 202 DAKMAVLRLSKGDMRKALNILQACHAAYDHIDVSAIYNCVGHPHPSDIDYFLKSIMNDEF 261
Query: 253 ---DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
+ S +KQ G + DI+T +F + E+ + K+ + + R+ G
Sbjct: 262 VIAFNTISSIKQ--QKGLALQDILTCIFEALDELEIKPNAKIFILDQLATIEHRMSFGCS 319
Query: 310 SYLQLCGLLAKL 321
+QL ++A +
Sbjct: 320 EKIQLSAMIASI 331
>gi|380015701|ref|XP_003691836.1| PREDICTED: replication factor C subunit 5-like [Apis florea]
Length = 330
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/326 (36%), Positives = 191/326 (58%), Gaps = 4/326 (1%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
+S + + ++PWVEKYRP K+ D++ + + + + + +P+L+ GPPGTGKT++I
Sbjct: 3 TSKPTQSTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDENLLPHLLFYGPPGTGKTSTI 62
Query: 64 LALAHELLGP-NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
LA A +L P + V+E+NASDDRGI++VR +I FA G K+++LDEAD+
Sbjct: 63 LACARKLYTPAQFNSMVLEMNASDDRGINIVRGQILSFASTGTMYRSG-FKLIILDEADA 121
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT AQ ALRR +E Y+++ RF + CN SKII +QSRC RF LS ++IL RL +
Sbjct: 122 MTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSIDQILPRLDTI 181
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
++EE + +G +A+I + GDMR+ LN LQ+T+ F V +ENV+ P P+ +KN
Sbjct: 182 IKEENLNVTEDGKQALITLSGGDMRKVLNVLQSTWLAFGAVTEENVYSCVGHPLPIDIKN 241
Query: 243 MVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTL-FRIIKNYEMAEHLKLEFMKEAGFA 300
+V + ++ ++ + G + DI+T L IIK +E + + ++ + +
Sbjct: 242 IVNWLFNESYELCYCKIQDIKLKKGLALQDILTELHLFIIKVFEFPDSILIDLIIKLAEI 301
Query: 301 HMRICDGVGSYLQLCGLLAKLSIVRE 326
R+ G +QL L++ R+
Sbjct: 302 EKRVSIGCSEAVQLNALVSAFQNARD 327
>gi|395744928|ref|XP_002823879.2| PREDICTED: replication factor C subunit 5 isoform 3 [Pongo abelii]
Length = 340
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 186/323 (57%), Gaps = 3/323 (0%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
+++ ++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA
Sbjct: 13 AATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFIIEDRLPHLLLYGPPGTGKTSTILA 72
Query: 66 LAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
A +L + V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT
Sbjct: 73 CAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMT 131
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+
Sbjct: 132 QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVE 191
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EEKV +G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++
Sbjct: 192 EEKVDVSEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANIL 251
Query: 245 RNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
+L F A + +L L G + DI+T + + + +++ + + R
Sbjct: 252 DWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLIKMADIEYR 311
Query: 304 ICDGVGSYLQLCGLLAKLSIVRE 326
+ G +QL L+A + R+
Sbjct: 312 LSVGTNEKIQLSSLIAAFQVTRD 334
>gi|289192114|ref|YP_003458055.1| transcriptional regulator, XRE family [Methanocaldococcus sp.
FS406-22]
gi|288938564|gb|ADC69319.1| transcriptional regulator, XRE family [Methanocaldococcus sp.
FS406-22]
Length = 864
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 121/284 (42%), Positives = 176/284 (61%), Gaps = 13/284 (4%)
Query: 44 GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQK 103
GN+P ++ TT+ L LA +L G N+R+ +ELNASD+RGIDV+R K+K FA+
Sbjct: 589 GNLPTVL-------HNTTAALCLARDLFGENWRDNFLELNASDERGIDVIRTKVKDFART 641
Query: 104 KVTLPPGK--HKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSR 161
K P G K++ LDE+D++TA AQ ALRRTME YS+ RF L+CN S+II PIQSR
Sbjct: 642 K---PIGDVPFKIIFLDESDALTADAQNALRRTMEKYSDVCRFILSCNYPSRIIPPIQSR 698
Query: 162 CAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFR 221
CA+ RFS L E+I +L + ++E + GLEAII+ ++GDMR+A+N LQ +
Sbjct: 699 CAVFRFSPLKKEDIAKKLKEIAEKEGLNLTESGLEAIIYVSEGDMRKAINVLQTAAALSD 758
Query: 222 FVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGL-KQLYDLGYSPTDIITTLFRII 280
++ E V+KV + P VK M++ L+GKF +A L K + + G S DI+ +FR I
Sbjct: 759 VIDDEIVYKVSSRARPEEVKKMMQLALDGKFIEARDLLYKLMVEWGMSGEDILNQMFREI 818
Query: 281 KNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324
+ ++ E K+E G RI +G +QL LLAK++++
Sbjct: 819 NSLDIDERKKVELADAIGETDFRIVEGANERIQLSALLAKMALM 862
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
D PWVEKYRP + DIVG + V RL +MP+L+ +GPPG GK
Sbjct: 2 DKPWVEKYRPKTLDDIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGK 49
>gi|340377781|ref|XP_003387407.1| PREDICTED: replication factor C subunit 5-like [Amphimedon
queenslandica]
Length = 332
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 117/319 (36%), Positives = 183/319 (57%), Gaps = 3/319 (0%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
A ++PWVEKYRP + D++ + + + + ++ +P+L+ GPPGTGKT++ILA A
Sbjct: 2 AVNLPWVEKYRPKNLDDLISHKEIINTIQHFLKEDRLPHLLFYGPPGTGKTSTILACAKT 61
Query: 70 LLGP-NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQ 128
+ P + V+ELNASDDRGIDVVR I+ FA + G K+++LDEAD+MT AQ
Sbjct: 62 IFSPAEIKSMVLELNASDDRGIDVVRGPIQSFASTRSIFRSG-FKLIILDEADAMTKDAQ 120
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKV 188
ALRR +E Y+++ RF L CN SKII +QSRC RF LS E++ RL +++EE +
Sbjct: 121 NALRRVIETYTDNVRFCLICNYLSKIIPALQSRCTRFRFGPLSMEQMSVRLQHIIREENI 180
Query: 189 PYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVL 248
G+++++ A GDMR++LN LQ+T + V+Q V+ QP P +K +V +L
Sbjct: 181 NITDSGMDSVVKLAQGDMRRSLNILQSTSMAYDTVDQRTVYLCTGQPLPEDIKQIVEWML 240
Query: 249 EGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDG 307
F A + +L + G + DIIT + ++ + ++L + + + G
Sbjct: 241 GEDFMTAYQKIIELKIEKGLALHDIITEIHHLVHRIDFPAKVRLALLDKMSNIEYNVSTG 300
Query: 308 VGSYLQLCGLLAKLSIVRE 326
+QL L+ VR+
Sbjct: 301 TSERIQLGALIGAFQNVRD 319
>gi|156384148|ref|XP_001633193.1| predicted protein [Nematostella vectensis]
gi|156220260|gb|EDO41130.1| predicted protein [Nematostella vectensis]
Length = 329
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/321 (36%), Positives = 184/321 (57%), Gaps = 3/321 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D++ + D + + + +P+L+ GPPGTGKT++ILA+A +L
Sbjct: 10 NLPWVEKYRPKCLDDLISHTDIINTIQRFINEERLPHLLFYGPPGTGKTSTILAVAKQLY 69
Query: 72 -GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGI +VR I FA + G K+V+LDEAD+MT AQ A
Sbjct: 70 PDKQFGSMVLELNASDDRGIGIVRGDILSFASTRTIFKSG-FKLVILDEADAMTQDAQNA 128
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR ME ++ +TRF L CN +KII +QSRC RF LS +++L RL V++ E+V
Sbjct: 129 LRRVMEKFTENTRFCLICNYLTKIIPALQSRCTRFRFGPLSVDQMLPRLEHVIESERVNV 188
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G ++++ A GDMR+ LN LQ+T + VN+++V+ QP P + N+V +L
Sbjct: 189 TDDGRKSLLRLAQGDMRKVLNILQSTSMAYSVVNEDHVYLCTGQPQPTDIGNIVDWMLNK 248
Query: 251 KFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
F A + + +L L G + DI+ + + +++ + + R+ G
Sbjct: 249 DFTTAYTNILKLKTLKGLALQDILEETHSYVHRVDFPAKIRIHLLDKMAEVEYRLASGTS 308
Query: 310 SYLQLCGLLAKLSIVRETAKA 330
+QL ++A + R+ +A
Sbjct: 309 EKIQLGSMIAAFQVARDMIEA 329
>gi|345790910|ref|XP_534696.3| PREDICTED: replication factor C subunit 5 [Canis lupus familiaris]
Length = 339
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 182/317 (57%), Gaps = 3/317 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA A +L
Sbjct: 18 NLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLY 77
Query: 72 -GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT AQ A
Sbjct: 78 KDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNA 136
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV EEKV
Sbjct: 137 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEEKVDL 196
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++ +L
Sbjct: 197 SEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQ 256
Query: 251 KFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
F A + +L L G + DI+T + + + +++ + + R+ G
Sbjct: 257 DFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRVHLLTKMADIEYRLSVGTN 316
Query: 310 SYLQLCGLLAKLSIVRE 326
+QL L+A + R+
Sbjct: 317 EKIQLSSLIAAFQVTRD 333
>gi|157123250|ref|XP_001660080.1| replication factor c / DNA polymerase iii gamma-tau subunit [Aedes
aegypti]
gi|108874432|gb|EAT38657.1| AAEL009465-PA [Aedes aegypti]
Length = 330
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 115/318 (36%), Positives = 193/318 (60%), Gaps = 4/318 (1%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D++ + + ++ + ++ +P+L+ GPPGTGKT++ILA A +L
Sbjct: 8 NLPWVEKYRPATLSDLISHEEIISTINKFIQEEQLPHLLFYGPPGTGKTSTILACARQLY 67
Query: 72 GP-NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
P ++ + V+ELNASDDRGI++VRN+I FA + T+ G +K+++LDEAD+MT AQ A
Sbjct: 68 KPQSFNQMVLELNASDDRGINIVRNQILNFASTR-TIFSGGYKLIILDEADAMTNDAQNA 126
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E Y+++ RF + CN SKII +QSRC RF+ LS ++IL RL V+ E +
Sbjct: 127 LRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLSPDQILPRLEHVIDAEGIKV 186
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G +A++ A GDMR+ LN LQ+T+ ++ V ++NV+ P + + N+V +L
Sbjct: 187 SDDGKKALMTLAGGDMRKVLNVLQSTWMAYKDVTEDNVYTCVGHPLKIDITNIVNWLLNV 246
Query: 251 K-FDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGV 308
+ F + +++L + G + DI+T + + E+ + + + + R+ G
Sbjct: 247 ESFKETFEKIQELKTNKGLALEDILTEIHLYVHRMELPPRVMSQLLIKMAAVEERLAAGC 306
Query: 309 GSYLQLCGLLAKLSIVRE 326
Q+ L+A I R+
Sbjct: 307 VEKPQMASLIAAFQIARD 324
>gi|429965079|gb|ELA47076.1| hypothetical protein VCUG_01437 [Vavraia culicis 'floridensis']
Length = 303
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 187/310 (60%), Gaps = 14/310 (4%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY 75
EKYRP ++ ++VGN + + + I +MP+L+ GP GTGKTT + +++
Sbjct: 7 TEKYRPKEIDNVVGNQETIKSIQSILNANSMPHLLFNGPSGTGKTTVAKIIGEKIVSD-- 64
Query: 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTM 135
++ V+ELNASD+RGID VR IK F+ + L G KV++LDE DSMT AQQA+RRTM
Sbjct: 65 KKHVLELNASDERGIDTVRTTIKNFSMR---LSTG-LKVIILDECDSMTVAAQQAMRRTM 120
Query: 136 EIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGL 195
E+ + RF L CN KI EPIQSRCAI F+++ +E++ +RL +V E + E L
Sbjct: 121 EMCTGDCRFILVCNNIQKISEPIQSRCAIFTFNKIKNEDMKTRLNEIVANENLNLSEEAL 180
Query: 196 EAIIFTADGDMRQALNNLQ-ATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
I+F +D DMRQA+N LQ A YS + V++ + K+ QP P ++N++ +L+ K +
Sbjct: 181 NTILFLSDSDMRQAINILQSALYS--KQVDENAILKITGQPSPKLIENIIILLLKNKMAE 238
Query: 255 ACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQL 314
A S +++ GY P D++ + FR+ KN + E +K +R+ +GVGS LQ
Sbjct: 239 ALSKFDCIWEDGYDPQDLLVSFFRVAKNMD-----NYEILKCISKYQLRLFEGVGSKLQF 293
Query: 315 CGLLAKLSIV 324
LL +S V
Sbjct: 294 YSLLRDISFV 303
>gi|158292645|ref|XP_314028.3| AGAP005144-PA [Anopheles gambiae str. PEST]
gi|157017089|gb|EAA09454.3| AGAP005144-PA [Anopheles gambiae str. PEST]
Length = 327
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 189/317 (59%), Gaps = 4/317 (1%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP K+ D++ + + + + ++ +P+L+ GPPGTGKT++ILA A +L
Sbjct: 8 NLPWVEKYRPAKLNDLISHEEIIGTINKFIKEEQLPHLLFYGPPGTGKTSTILACARQLY 67
Query: 72 GP-NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
P ++ V+ELNASDDRGI++VR +I FA + T+ G +K+++LDEAD+MT AQ A
Sbjct: 68 KPQSFGSMVLELNASDDRGINIVRGQILDFASTR-TIFKGGYKLIILDEADAMTNDAQNA 126
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E Y+ + RF + CN SKII IQSRC RF+ LS ++IL RL VV+ E +
Sbjct: 127 LRRIIEKYTENVRFCIICNYLSKIIPAIQSRCTRFRFAPLSPDQILPRLEHVVEAEGIDV 186
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G +A++ A GDMR+ LN LQ+T+ ++ V + NV+ P + N++ +L
Sbjct: 187 TDDGKKALMTLAGGDMRKVLNVLQSTWMAYKKVTEVNVYNCVGHPLKEDINNIIFWLLNE 246
Query: 251 KFDDAC-SGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGV 308
+ AC ++QL G + DI+T + ++ E+ + + + R+ DG
Sbjct: 247 ESFKACYEKIQQLKTQKGLALEDILTEIHLVVNRLEIPPRVSSQLLINLASIEERLADGC 306
Query: 309 GSYLQLCGLLAKLSIVR 325
Q+ L+A S VR
Sbjct: 307 VEKPQITALIAAFSKVR 323
>gi|302813098|ref|XP_002988235.1| hypothetical protein SELMODRAFT_235493 [Selaginella moellendorffii]
gi|302819400|ref|XP_002991370.1| hypothetical protein SELMODRAFT_236274 [Selaginella moellendorffii]
gi|300140763|gb|EFJ07482.1| hypothetical protein SELMODRAFT_236274 [Selaginella moellendorffii]
gi|300143967|gb|EFJ10654.1| hypothetical protein SELMODRAFT_235493 [Selaginella moellendorffii]
Length = 332
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 182/316 (57%), Gaps = 5/316 (1%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + D+ + D + + + + +P+L+L GPPGTGKT++ILA+A +L GP
Sbjct: 10 PWVEKYRPASLADVAAHKDIIDTIDRLTAENKLPHLLLYGPPGTGKTSTILAVARKLYGP 69
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH---KVVVLDEADSMTAGAQQA 130
++ ++ELNASDDRGIDVVR +I+ FA + ++ G+ K+++LDEAD+MT AQ +
Sbjct: 70 QFQNMILELNASDDRGIDVVRQQIQDFASTQ-SISFGEKANVKLIILDEADAMTKDAQFS 128
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E Y+ +TRF L CN SKII +QSRC RF L + + RL V+ +E++
Sbjct: 129 LRRIIEKYTKNTRFCLICNYVSKIIPALQSRCTRFRFPPLQAQHVRERLEFVIDQERLDV 188
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+GL AI+ ++GDMR+ALN LQ+T V + V+ P P ++ + +L
Sbjct: 189 TEDGLSAIVRLSNGDMRKALNILQSTQMAEPHVTEAAVYSCTGNPTPKEIEQIASWLLNE 248
Query: 251 KFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
F A S + QL G + D++ L I M ++++ + R+ G
Sbjct: 249 SFQSAYSNIVQLKTSKGLALVDVVRELQPFIFTISMPGNIRVPLINCLADIEYRLASGPN 308
Query: 310 SYLQLCGLLAKLSIVR 325
LQL L++ + R
Sbjct: 309 EKLQLGALVSAFTHTR 324
>gi|224009073|ref|XP_002293495.1| replication factor C 36 kDa subunit [Thalassiosira pseudonana
CCMP1335]
gi|220970895|gb|EED89231.1| replication factor C 36 kDa subunit [Thalassiosira pseudonana
CCMP1335]
Length = 321
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/267 (44%), Positives = 166/267 (62%), Gaps = 4/267 (1%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP K+ D+V + D VA L + N+P+L+L GPPGTGKT++I+A A + G
Sbjct: 1 MPWVEKYRPAKLEDLVAHEDIVAILTRLIDSDNLPHLLLYGPPGTGKTSTIVAAAKRMYG 60
Query: 73 PN--YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
Y +ELNASD RGIDVVRN+IK FA + G K+++LDEAD+MT+ AQ A
Sbjct: 61 STAAYSSMALELNASDSRGIDVVRNEIKEFAGTRQLFHSGI-KLIILDEADAMTSDAQFA 119
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ + RF L CN SKII +QSRC RF+ L E+I SRL+ V EK Y
Sbjct: 120 LRRVIEKHTKNARFCLICNYVSKIIPALQSRCTRFRFAPLKQEQIRSRLVEVADAEKCNY 179
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G++AI+ + GDMR+ LN LQ+T G V+++NV+ P P V + ++
Sbjct: 180 TEDGIQAILDLSGGDMRRVLNLLQSTAMGSEIVDEKNVYMTSGAPLPRDVHVAMEWLMNL 239
Query: 251 KFDDACSGLKQLYDL-GYSPTDIITTL 276
+F D L + GY+ TDI+T L
Sbjct: 240 EFKDVYEKLTNMCSTKGYALTDILTEL 266
>gi|148233376|ref|NP_001080677.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus laevis]
gi|27882432|gb|AAH44712.1| Rfc5-prov protein [Xenopus laevis]
Length = 335
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 117/321 (36%), Positives = 184/321 (57%), Gaps = 3/321 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D++ + D ++ + + +P+L+ GPPGTGKT++ILA A +L
Sbjct: 14 NLPWVEKYRPQTLDDLISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACAKQLY 73
Query: 72 GP-NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT AQ A
Sbjct: 74 KDREFNSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNA 132
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ +TRF L CN SKII +QSRC RF LS + ++ RL VV+EE+V
Sbjct: 133 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSSDMMIPRLEHVVKEERVDI 192
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
P+G++A++ ++GDMR++LN LQ+T + V ++ V+ P + N++ +L
Sbjct: 193 SPDGMKALVTLSNGDMRRSLNILQSTNMAYGKVTEDTVYTCTGHPLRSDIANILDWMLNK 252
Query: 251 KFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
F A + +L L G + DI+T + + +++ + + R+ G
Sbjct: 253 DFTSAYKNIMELKTLKGLALHDILTEVHLYVHRVNFPASVRMHLLVKMADIEYRLASGTS 312
Query: 310 SYLQLCGLLAKLSIVRETAKA 330
+QL L+A + R+ A
Sbjct: 313 EKIQLSSLIAAFQVARDMVVA 333
>gi|156849229|ref|XP_001647495.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM
70294]
gi|156118181|gb|EDO19637.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM
70294]
Length = 350
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 132/340 (38%), Positives = 186/340 (54%), Gaps = 26/340 (7%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
SS S PWVEKYRP K+ D+ AV L N+P+++ GPPGTGKT++I
Sbjct: 13 SSEVDSEQTQPWVEKYRPKKLDDVAAQEHAVTVLKRTLGSANLPHMLFYGPPGTGKTSTI 72
Query: 64 LALAHELLGPNY-REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK---------HK 113
LAL EL GPN + V+ELNASD+RGI +VR K+K FA+ V+ P + +K
Sbjct: 73 LALTKELFGPNLIKSRVLELNASDERGISIVREKVKNFARLTVSKPSKEDLEKYPCPPYK 132
Query: 114 VVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDE 173
+++LDEADSMTA AQ ALRRTME YSN TRF L CN ++II+P+ SRC+ RF L +
Sbjct: 133 IIILDEADSMTADAQSALRRTMETYSNITRFCLICNYVTRIIDPLASRCSKFRFKALDET 192
Query: 174 EILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFV-NQENVFKVC 232
L RL V QEE V Y LE I+ + GD+R+A+ LQ+ + N E +
Sbjct: 193 NALDRLKFVAQEENVNYKENVLEKILEISSGDLRRAITLLQSASKTSTYTENSEITVNLV 252
Query: 233 DQ-----PHPLHVKNMVRNVLEGKFDDACSG-LKQLYDLGYSPTDIITTLFRIIKNYEMA 286
++ P P N + V+ K DA + L + G+S T ++ L +Y +
Sbjct: 253 EELAGVVPSP--ALNEIIEVVSSKNIDAVTKYLDKFIRNGWSGTSVVNQLH---NHYITS 307
Query: 287 EHLKLEFMKEAGF----AHMRICDGVGSYLQLCGLLAKLS 322
E +F + + ++ +G ++QL LL K+S
Sbjct: 308 EDYSADFKNKVSWILFETDSKLNNGTNEHIQLLNLLVKIS 347
>gi|432853216|ref|XP_004067597.1| PREDICTED: replication factor C subunit 4-like [Oryzias latipes]
Length = 355
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 187/325 (57%), Gaps = 9/325 (2%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
A S+ +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 20 AGPSADKKPKTVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 79
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKV--TLPPGK----HKV 114
+ILA A EL GP YR+ V+ELNASD+RGI VVR K+K FAQ V T P GK K+
Sbjct: 80 TILAAARELYGPELYRQRVLELNASDERGIQVVREKVKTFAQLTVAGTRPDGKLCPPFKI 139
Query: 115 VVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEE 174
++LDEADSMTA AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF L++
Sbjct: 140 IILDEADSMTAPAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLANRI 199
Query: 175 ILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQ--ATYSGFRFVNQENVFKVC 232
RL+ + ++E + Y E +EA++ ++GD+R+A+ LQ A + + + + ++
Sbjct: 200 QEERLLEICEKENLKYTRESIEALVQVSEGDLRKAITFLQCAARLNMDKEITDRAIVEIA 259
Query: 233 DQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLE 292
++ +++ +G F+ ++ L + GY+ T I++ L I ++ + K
Sbjct: 260 GVVPSKMIEGLLQTCFKGTFERLEVTVRNLVNDGYAATQILSQLHESIIESDLKDKDKSI 319
Query: 293 FMKEAGFAHMRICDGVGSYLQLCGL 317
++ + DG YLQ+ L
Sbjct: 320 ITEKMAVVSKCLSDGADEYLQMLSL 344
>gi|171185161|ref|YP_001794080.1| replication factor C small subunit [Pyrobaculum neutrophilum
V24Sta]
gi|170934373|gb|ACB39634.1| Replication factor C [Pyrobaculum neutrophilum V24Sta]
Length = 319
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 123/314 (39%), Positives = 177/314 (56%), Gaps = 9/314 (2%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++ W EKYRP ++V + +RL R GNMP+L+ GPPGTGKTT L LA EL
Sbjct: 3 ELFWFEKYRPRSFDEVVDLEEVKSRLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELY 62
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G +RE +ELNASD+RGI+V+R ++K FA+ P K+V+LDEAD+MT+ AQQAL
Sbjct: 63 GEYWRENTLELNASDERGINVIRERVKEFARTAPIKAP--FKLVILDEADNMTSDAQQAL 120
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR MEIY+ +TRF L N S IIEPIQSR +VRF+ L + +++RL + + E +
Sbjct: 121 RRIMEIYAQNTRFILLANYVSGIIEPIQSRVVMVRFNPLPKDAVIARLRYIAENEGIKAS 180
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+ LE I GDMR+A+N LQ + R + +E V K P ++ + + G
Sbjct: 181 DDALETIFEFTQGDMRKAINALQIAAATSREITEETVAKALGLVSPKLLRETLHEAVRGS 240
Query: 252 FDDACSGLKQLY----DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDG 307
F A + Q+Y D G +I+ + R + ++ E++K + AH G
Sbjct: 241 FSKAMT---QIYGFVVDGGVGELEILKQIHREVLRLDVPEYVKPDLAYIVAEAHYATLRG 297
Query: 308 VGSYLQLCGLLAKL 321
Q+ G LAK+
Sbjct: 298 ARGLAQIYGALAKV 311
>gi|356509405|ref|XP_003523440.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
Length = 363
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 122/329 (37%), Positives = 193/329 (58%), Gaps = 5/329 (1%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+ +S+ +++ IPWVEKYRP + D+ + D V + + + +P+L+L GPPGTGKT
Sbjct: 28 VVASNPAAAGKAIPWVEKYRPLSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKT 87
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH---KVVVL 117
++ILA+A +L G Y+ ++ELNASDDRGIDVVR +I+ FA + +L G K+V+L
Sbjct: 88 STILAVARKLYGSQYQNMILELNASDDRGIDVVRQQIQDFASTQ-SLSFGVKSSVKLVLL 146
Query: 118 DEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILS 177
DEAD+MT AQ ALRR +E Y+ STRFAL CN +KII +QSRC RF+ L +
Sbjct: 147 DEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTE 206
Query: 178 RLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHP 237
RL V++ E + GL A++ ++GDMR+ALN LQ+T+ + + +E V+ P P
Sbjct: 207 RLKHVIKAEGLDVEDSGLAALVRLSNGDMRKALNILQSTHMASQQITEETVYLCTGNPLP 266
Query: 238 LHVKNMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKE 296
++ + +L +F D+ + ++ G + DI+ + + +M ++++ M +
Sbjct: 267 KDIEQISYWLLNEQFADSFKRIDEMKTRKGLALVDIVREVTLFVFKIKMPSAVRVQLMND 326
Query: 297 AGFAHMRICDGVGSYLQLCGLLAKLSIVR 325
R+ G LQL ++A S R
Sbjct: 327 LADIEYRLSFGCNDKLQLGSVIASFSRAR 355
>gi|253742391|gb|EES99226.1| Replication factor C, subunit 4 [Giardia intestinalis ATCC 50581]
Length = 322
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/312 (38%), Positives = 182/312 (58%), Gaps = 3/312 (0%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+P++E+YRP + ++GN + + RL A GN+PN++L G PG GKTT L LA+++LG
Sbjct: 4 LPFIERYRPRTLDGLIGNPEILRRLRYFAAQGNLPNILLTGGPGLGKTTIALCLANQMLG 63
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
N EA +ELNASD+R + +R K+K FAQK+VTLP G K+V LDE D+MT AQQ LR
Sbjct: 64 SNRSEAFLELNASDERNVSDIRAKVKTFAQKQVTLPAGIQKLVFLDECDAMTEAAQQVLR 123
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R M+ + STRF LACN SK+IEP+QSRC ++R + E++ L + ++E V
Sbjct: 124 RIMDDETGSTRFCLACNNISKVIEPVQSRCCVLRIMPATQAELIKYLQDICEKEGVKSDT 183
Query: 193 EGLEAIIFTADGDMRQALNNLQATY-SGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
E L+ +I + D+R LN+LQ + + V V K + +++ + GK
Sbjct: 184 EALKELITISGNDIRSCLNSLQLVMDANNKVVTVAGVQKALSTIDVKIINQVMKLLTSGK 243
Query: 252 FDDACSGLKQLYDLGYSPTDIITTLFRIIKN--YEMAEHLKLEFMKEAGFAHMRICDGVG 309
FD+ + + + GY+ DI +FR N E+ + ++ ++ H + V
Sbjct: 244 FDEGWALIDNQLNGGYNYDDIYNAMFRYALNSDTEINDVVRASMLRILASLHAKSKTTVS 303
Query: 310 SYLQLCGLLAKL 321
S LQLC LLA+L
Sbjct: 304 SPLQLCRLLAEL 315
>gi|352683023|ref|YP_004893547.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
gi|350275822|emb|CCC82469.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
Length = 328
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 179/311 (57%), Gaps = 6/311 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W EKYRP +IV + ARL + GNMP+L+ GPPGTGKTT+ L LA EL G
Sbjct: 8 WFEKYRPKSFAEIVDLEEIKARLAEFIKAGNMPHLLFYGPPGTGKTTTALVLARELYGER 67
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGAQQALR 132
+RE +ELNASD+RGI+V+R ++K FA+ T P G K+VVLDEAD+MT+ AQQALR
Sbjct: 68 WRENTLELNASDERGINVIRERVKEFAR---TAPAGGAPFKLVVLDEADNMTSDAQQALR 124
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R ME+Y+ +TRF L N S+II+PI SRCA+ RF + + RL + +E++
Sbjct: 125 RIMEMYAATTRFVLLANYVSRIIDPILSRCAVFRFPPMPKPLMAQRLQYIASQERIKLTE 184
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+G++AI + GDMR+A+N LQ + V++E+V V P + + G
Sbjct: 185 DGIDAIYEISQGDMRRAINLLQMAAASAGVVDKESVAAVASAAKPSEILEIFNLAFSGDV 244
Query: 253 DDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
+ A L+ L Y G + DI+ L R + ++ E K + +R+ +G
Sbjct: 245 EKARERLRDLMYMRGIAGIDILKALQRELPRLQIDEETKAAVAELLADVDLRLVEGSDEE 304
Query: 312 LQLCGLLAKLS 322
LQL +L KL+
Sbjct: 305 LQLTYMLVKLA 315
>gi|344282143|ref|XP_003412834.1| PREDICTED: replication factor C subunit 4 [Loxodonta africana]
Length = 373
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 126/330 (38%), Positives = 186/330 (56%), Gaps = 14/330 (4%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS + A +PWVEKYRP +V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 27 GSSGENKKAKPVPWVEKYRPKRVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 86
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP +R V+ELNASD+RGI VVR K+K FAQ V+ PP
Sbjct: 87 TILAAARELFGPELFRSRVLELNASDERGIQVVREKVKSFAQLTVSGSRSDGKPCPP--F 144
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD
Sbjct: 145 KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD 204
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFK 230
+ RL+ + ++E V EG+ +I ++GD+R+A+ LQ+ + + V ++ +
Sbjct: 205 KTQQQRLLDIAEKENVKITNEGIAYLINVSEGDLRKAITFLQSATRLTAGKEVTEKVIMD 264
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHL 289
+ + + G FD + +K L D G+ T ++ +++N+ +++
Sbjct: 265 IAGVIPAETIDGIFAVCQSGSFDKLEAVVKDLIDEGHPATQLVNQFHDVVVENHHLSDKQ 324
Query: 290 KLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
K ++ + DG +LQL L A
Sbjct: 325 KSVITEKLAEVDQCLADGADEHLQLISLCA 354
>gi|146181988|ref|XP_001023745.2| ATPase, AAA family protein [Tetrahymena thermophila]
gi|146143985|gb|EAS03500.2| ATPase, AAA family protein [Tetrahymena thermophila SB210]
Length = 373
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 188/316 (59%), Gaps = 9/316 (2%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP K+ ++ + + L + GN+P+LIL GPPGTGKT+SILA A +L G
Sbjct: 42 LPWVEKYRPNKIEEVSYQEEVIKSLQGVLLSGNLPHLILHGPPGTGKTSSILAFAKQLYG 101
Query: 73 PN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK------HKVVVLDEADSMTA 125
P Y+E ++ELNASDDRGI +VR+KIK FAQ+ V+ P K K+++LDEADSMT
Sbjct: 102 PTFYKERILELNASDDRGIQIVRDKIKKFAQQVVSKNPDKSFKCPNFKIIILDEADSMTT 161
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRR +E S++TRF + CN +KIIEP+ SRC RF + E +++L + +
Sbjct: 162 EAQSALRRIIEDTSSTTRFCIICNYITKIIEPLGSRCVKFRFKPIPLEAQITKLEEICKT 221
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMV 244
E + Y E LE +I ++GD+R+++N LQ+ + + + + E + ++ + L + +
Sbjct: 222 EDIEYEKEALEKLIKISNGDLRKSVNLLQSASTLYEKDIKVEVIEEISGVNYLLCINKLY 281
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFMKEAGFAHMR 303
+ ++ FD G+KQ GYSP ++ II + + E K +++ A
Sbjct: 282 KLLIGKDFDKLKEGVKQFLYQGYSPDQLLYQFSEYIISSKDFNEVKKARILEKIALADKG 341
Query: 304 ICDGVGSYLQLCGLLA 319
+ + S LQ+ + +
Sbjct: 342 LNERADSELQILNMFS 357
>gi|147902441|ref|NP_001085526.1| MGC80325 protein [Xenopus laevis]
gi|49117945|gb|AAH72889.1| MGC80325 protein [Xenopus laevis]
Length = 335
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 116/326 (35%), Positives = 186/326 (57%), Gaps = 3/326 (0%)
Query: 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
S + ++PWVEKYRP + +++ + D ++ + + +P+L+ GPPGTGKT++ILA
Sbjct: 9 SGQSRNLPWVEKYRPQTLDELISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILAC 68
Query: 67 AHELLGP-NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
A +L + V+ELNASDDRGID+VR + FA + G K+V+LDEAD+MT
Sbjct: 69 AKQLYKDREFNSMVLELNASDDRGIDIVRGPVLSFASTRTIFKKG-FKLVILDEADAMTQ 127
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRR +E ++ +TRF L CN SKII +QSRC RF LS E ++ RL VV+E
Sbjct: 128 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSSEMMIPRLEHVVKE 187
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E V P+G++A++ ++GDMR++LN LQ+T + V ++ V+ P + N++
Sbjct: 188 EHVDISPDGMKALVTLSNGDMRRSLNILQSTNMAYSKVTEDTVYTCTGHPLRSDIANILD 247
Query: 246 NVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRI 304
+L F A + +L L G + DI+T + + + +++ + + R+
Sbjct: 248 WMLNKDFTSAYKNIMELKTLKGLALHDILTEIHLYVHRVDFPALVRIHLLVKMADIEYRL 307
Query: 305 CDGVGSYLQLCGLLAKLSIVRETAKA 330
G +QL ++A + R+ A
Sbjct: 308 ASGTSEKIQLSSMIAAFQVARDMVAA 333
>gi|58331833|ref|NP_001011112.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana)
tropicalis]
gi|54038730|gb|AAH84510.1| replication factor C (activator 1) 5 [Xenopus (Silurana)
tropicalis]
gi|89268121|emb|CAJ83540.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana)
tropicalis]
Length = 335
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 184/321 (57%), Gaps = 3/321 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D++ + D ++ + + +P+L+ GPPGTGKT++ILA A +L
Sbjct: 14 NLPWVEKYRPQTLDDLISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACAKQLY 73
Query: 72 GP-NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT AQ A
Sbjct: 74 KDREFNSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNA 132
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ +TRF L CN SKII +QSRC RF LS E ++ RL VV+EE V
Sbjct: 133 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPEMMVPRLEHVVKEECVDI 192
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
P+G++A++ ++GDMR++LN LQ+T + V ++ V+ P + N++ +L
Sbjct: 193 SPDGMKALVTLSNGDMRRSLNILQSTNMAYGKVTEDTVYTCTGHPLRSDIANILDWMLNK 252
Query: 251 KFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
F A + +L L G + DI+T + + + +++ + + R+ G
Sbjct: 253 DFTSAYKNIMELKTLKGLALHDILTEVHLYVHRVDFPASVRMHLLIKMADVEYRLASGTS 312
Query: 310 SYLQLCGLLAKLSIVRETAKA 330
+QL L+A + R+ A
Sbjct: 313 EKIQLSSLIAAFQVARDMVAA 333
>gi|47115239|emb|CAG28579.1| RFC5 [Homo sapiens]
Length = 340
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 118/323 (36%), Positives = 185/323 (57%), Gaps = 3/323 (0%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
+++ ++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA
Sbjct: 13 AATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILA 72
Query: 66 LAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
A +L + V+ELNASDDRGID++R I FA + G K+V+LDEAD+MT
Sbjct: 73 CAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILDEADAMT 131
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+
Sbjct: 132 QDAQNALRGVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVE 191
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EEKV +G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++
Sbjct: 192 EEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANIL 251
Query: 245 RNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
+L F A + +L L G + DI+T + + + +++ + + R
Sbjct: 252 DWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYR 311
Query: 304 ICDGVGSYLQLCGLLAKLSIVRE 326
+ G +QL L+A + R+
Sbjct: 312 LSVGTNEKIQLSSLIAAFQVTRD 334
>gi|9453897|dbj|BAB03292.1| replication factor C small subunit precursor [Pyrococcus furiosus
DSM 3638]
Length = 268
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 170/268 (63%), Gaps = 6/268 (2%)
Query: 60 TTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVL 117
TT+ LALA EL G N+R +ELNASD+RGI+V+R K+K FA+ K P G K++ L
Sbjct: 1 TTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTK---PIGGASFKIIFL 57
Query: 118 DEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILS 177
DEAD++T AQQALRRTME++S++ RF L+CN SSKIIEPIQSRCAI RF L DE+I
Sbjct: 58 DEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAK 117
Query: 178 RLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHP 237
RL + + E + EGL+AI++ A+GDMR+A+N LQA + + + ENVF V + P
Sbjct: 118 RLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVASRARP 177
Query: 238 LHVKNMVRNVLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKE 296
++ M+ L+G F A L++ L G S D++ + + + N + E K+ +
Sbjct: 178 EDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADK 237
Query: 297 AGFAHMRICDGVGSYLQLCGLLAKLSIV 324
G + R+ +G +QL LLA+ +++
Sbjct: 238 IGEYNFRLVEGANEIIQLEALLAQFTLI 265
>gi|320581211|gb|EFW95432.1| DNA replication factor C [Ogataea parapolymorpha DL-1]
Length = 325
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 113/315 (35%), Positives = 184/315 (58%), Gaps = 5/315 (1%)
Query: 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH 68
S+ ++PWVEKYRP K+ D+ G D V + A++G +P+L+ GPPGTGKT++I+ALA
Sbjct: 2 SSDNLPWVEKYRPAKLDDVYGQKDVVQTVRKFAKEGRIPHLLFYGPPGTGKTSTIIALAR 61
Query: 69 ELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQ 128
EL G NYR V+ELNASDDRGIDVVR++IK FA + G K+++LDEAD+M+ AQ
Sbjct: 62 ELYGKNYRNMVLELNASDDRGIDVVRDQIKNFASTRQIFNSG-FKLIILDEADAMSNAAQ 120
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKV 188
ALRR +E Y+ +TRF + N S K+ + SRC RFS L+D + R+ V++ E +
Sbjct: 121 NALRRVIEKYTKNTRFCILANYSHKLNPALLSRCTRFRFSPLADSALQDRVDYVIKAEGL 180
Query: 189 PYVPEGLEAIIFTADGDMRQALNNLQATYSGFRF---VNQENVFKVCDQPHPLHVKNMVR 245
+ ++++ ++GDMR+ALN LQA + + Q+ V++ P P V ++
Sbjct: 181 KIASDARQSLLELSEGDMRRALNVLQACATAVESGEEITQDMVYECVGAPRPQSVMTVLD 240
Query: 246 NVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRI 304
++ + DA + + ++ G + D+++ ++ YE+ ++ ++ G I
Sbjct: 241 AIMSNDWTDAYATMTKIRKTEGLALVDLMSGFVSVLDKYELKPRTRMAVLQGLGDIEYSI 300
Query: 305 CDGVGSYLQLCGLLA 319
G +Q ++
Sbjct: 301 SKGGSDKIQCTAVIG 315
>gi|195384914|ref|XP_002051157.1| GJ14606 [Drosophila virilis]
gi|194147614|gb|EDW63312.1| GJ14606 [Drosophila virilis]
Length = 332
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 122/326 (37%), Positives = 188/326 (57%), Gaps = 4/326 (1%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
S S+ + +PWVEKYRP + D++ + + ++ + +P+L+ GPPGTGKT++I
Sbjct: 2 SESNGAVARMPWVEKYRPNCLDDLISHEEIISTINRFINQKQLPHLLFYGPPGTGKTSTI 61
Query: 64 LALAHELLGP-NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
LA A +L P +++ V+ELNASDDRGI +VR +I FA + T+ G K+++LDEAD+
Sbjct: 62 LACARQLYSPAHFKSMVLELNASDDRGIGIVRGQILNFASTR-TIFCGTFKLIILDEADA 120
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT AQ ALRR +E Y+ + RF + CN SKII +QSRC RF+ LS E++L RL V
Sbjct: 121 MTNDAQNALRRIIEKYTENVRFCVICNYLSKIIPALQSRCTRFRFAPLSPEQMLPRLNKV 180
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
+QEE V +G A++ A GDMR+ LN LQ+T F VN++NV+ P +++
Sbjct: 181 IQEENVNVTDDGKNALLTLAKGDMRKVLNVLQSTSMAFDIVNEDNVYMCVGYPLRSEIEH 240
Query: 243 MVRNVLE-GKFDDACSGLKQLYD-LGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
M++ +L FD A +++ G + DI+T L I E+ + + + +
Sbjct: 241 MLQTLLSAATFDSAFDTIEEAKSKRGLALEDIVTELHLFIMRLELPMSVMNKLIVKMAQV 300
Query: 301 HMRICDGVGSYLQLCGLLAKLSIVRE 326
R+ G Q L++ I R+
Sbjct: 301 EERLTKGCTETAQTAALVSAFFISRD 326
>gi|383849950|ref|XP_003700596.1| PREDICTED: replication factor C subunit 5-like [Megachile
rotundata]
Length = 329
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 117/316 (37%), Positives = 182/316 (57%), Gaps = 3/316 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP K+ D++ + D + + + +P+L+ GPPGTGKT++ILA A +L
Sbjct: 10 NLPWVEKYRPKKLDDLISHEDIIKTINKFINEDQLPHLLFYGPPGTGKTSTILACARKLY 69
Query: 72 -GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+E+NASDDRGI +VR +I FA TL K+++LDEAD+MT AQ A
Sbjct: 70 TAGQFNSMVLEMNASDDRGIGIVRGQILNFASTG-TLYKSGFKLIILDEADAMTNDAQNA 128
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E Y+++ RF + CN SKII +QSRC RF LS ++IL RL +++EE +
Sbjct: 129 LRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSSDQILPRLETIIKEENLNV 188
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G EA+I + GDMR+ LN LQ+T+ F V +E V+ P P+ +KN+V +L
Sbjct: 189 SEDGKEALIALSGGDMRKVLNVLQSTWLAFGTVTEETVYTCVGHPLPIDIKNIVNWLLNE 248
Query: 251 KFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
++ ++ + G + DI+T L + E + + +E + + R+ G
Sbjct: 249 SYELCYCKIQDIKLKKGLALQDILTQLHLFVNKIEFPDSILIELIIKLAEIEKRVAIGCS 308
Query: 310 SYLQLCGLLAKLSIVR 325
+QL L++ R
Sbjct: 309 EPVQLNALVSAFQNAR 324
>gi|345484012|ref|XP_001599543.2| PREDICTED: replication factor C subunit 5-like [Nasonia
vitripennis]
Length = 285
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 113/282 (40%), Positives = 176/282 (62%), Gaps = 3/282 (1%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
S + + ++PWVEKYRP+K+ D++ + + + + + +P+L+L GPPGTGKT++
Sbjct: 2 SPDVAKTTPNLPWVEKYRPSKLDDLISHEEIIQTINKFIDENQLPHLLLYGPPGTGKTST 61
Query: 63 ILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
ILA A +L P + V+ELNASDDRGI +VR +I FA G +K+++LDEAD
Sbjct: 62 ILACAKKLYTPQQFNSMVLELNASDDRGIGIVRGQILSFASTGTMYRSG-YKLIILDEAD 120
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
+MT AQ ALRR +E Y+++ RF + CN SKII +QSRC RF L+ E+IL RL
Sbjct: 121 AMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLAPEQILPRLEH 180
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
V+ EE V +G +A++ + GDMR+ +N LQ+T+ F VN+ENV+ P P+ +K
Sbjct: 181 VITEENVTVTEDGKKALMTLSGGDMRKVINVLQSTWLAFGCVNEENVYTCVGHPLPVDIK 240
Query: 242 NMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKN 282
N++ +L ++ A + ++ L G + DI+T + ++ N
Sbjct: 241 NIINWLLNESYEAAYNKVQDLKTKKGLALQDILTEIQVLVNN 282
>gi|440912210|gb|ELR61801.1| Replication factor C subunit 5 [Bos grunniens mutus]
Length = 340
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 121/318 (38%), Positives = 184/318 (57%), Gaps = 4/318 (1%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA A +L
Sbjct: 18 NLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLY 77
Query: 72 -GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT AQ A
Sbjct: 78 KDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNA 136
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+EEKV
Sbjct: 137 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDI 196
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G++A+I + GDMR+ALN LQ+T F V +E V+ P + N++ +L
Sbjct: 197 SEDGMKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQ 256
Query: 251 KFDDAC-SGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGV 308
F A + + +L L G + DI+T + + + +++ + + R+ G
Sbjct: 257 DFTTAYRNNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLAVGT 316
Query: 309 GSYLQLCGLLAKLSIVRE 326
+QL L+A + R+
Sbjct: 317 SEKIQLSSLIAAFQVTRD 334
>gi|296224812|ref|XP_002758207.1| PREDICTED: replication factor C subunit 4 [Callithrix jacchus]
Length = 363
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 126/329 (38%), Positives = 186/329 (56%), Gaps = 13/329 (3%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS + A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 27 GSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 86
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP +R V+ELNASD+RGI VVR K+K FAQ V+ PP
Sbjct: 87 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--F 144
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD
Sbjct: 145 KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD 204
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFK 230
+ RL+ + + E V EG+ ++ ++GD+R+A+ LQ+ +G + + ++ +
Sbjct: 205 KIQQQRLLDIAERENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITD 264
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLK 290
+ + ++ G FD + +K L D G++ T +++ L ++ + + K
Sbjct: 265 IAGVIPAEKIDGVLAACQSGSFDKLEAVVKDLIDEGHAATQLVSQLHDVVVENNLPDKQK 324
Query: 291 LEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
++ A + DG +LQL L A
Sbjct: 325 SIITEKLAEADKCLADGADEHLQLISLCA 353
>gi|444723208|gb|ELW63869.1| Replication factor C subunit 5 [Tupaia chinensis]
Length = 341
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 183/323 (56%), Gaps = 3/323 (0%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
+++ ++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA
Sbjct: 14 AATKTRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILA 73
Query: 66 LAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
A +L + V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT
Sbjct: 74 CAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMT 132
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV
Sbjct: 133 QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVG 192
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EE V +G++A+I + GDMR+ALN LQ+T F V +E V P + N++
Sbjct: 193 EENVDITEDGMKALITLSSGDMRRALNILQSTNMAFGKVTEETVHTCTGHPLRSDIANIL 252
Query: 245 RNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
+L F A + +L L G + DI+T + + + +++ + + R
Sbjct: 253 DWMLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRVHLLTKMADIEYR 312
Query: 304 ICDGVGSYLQLCGLLAKLSIVRE 326
+ G +QL L+A + R+
Sbjct: 313 LSVGTNEKIQLSSLIAAFQVTRD 335
>gi|30913228|sp|O74111.1|RFC3_ARXAD RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3; AltName: Full=Activator 1 subunit 3
gi|3367626|emb|CAA07618.1| replication factor C subunit [Blastobotrys adeninivorans]
Length = 338
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 113/307 (36%), Positives = 179/307 (58%), Gaps = 9/307 (2%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRPT + ++ G+ + + +G +P+L+ GPPGTGKTT+I+A+A ++ G
Sbjct: 17 LPWVEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQIYG 76
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
NYR ++ELNASD+RGIDVVR++IK FA + G K+V+LDEAD+MT AQ ALR
Sbjct: 77 KNYRNMILELNASDERGIDVVRDQIKTFASTRQIFSSG-FKLVILDEADAMTNAAQNALR 135
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R +E YS TRF + N + K+ + SRC RFS L ++ I RL V+++E V P
Sbjct: 136 RIIEKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKEDAIKHRLAHVIEQESVDLSP 195
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGF---RFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
E ++++ + GDMR+ALN LQA Y+ +++E V+ P P ++ +++ VL+
Sbjct: 196 EAFQSLLHLSSGDMRRALNVLQACYASVDAGEQISEELVYDCVGSPRPADIRTVLQAVLD 255
Query: 250 GKFDDAC---SGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICD 306
G ++ A S +KQ G + D++T + ++ ++ + R+
Sbjct: 256 GSWESALHTFSYIKQ--SKGLALADMLTAFAVEFQKLDLQNKTRIALLDGLSEIEWRLSS 313
Query: 307 GVGSYLQ 313
G +Q
Sbjct: 314 GGNESIQ 320
>gi|114050971|ref|NP_001040148.1| replication factor C (activator 1) 5 [Bombyx mori]
gi|87248211|gb|ABD36158.1| replication factor C (activator 1) 5 [Bombyx mori]
Length = 334
Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 115/326 (35%), Positives = 186/326 (57%), Gaps = 8/326 (2%)
Query: 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH 68
+ ++PWVEKYRP ++ D+V + D + + ++ +P+L+ GPPGTGKT++ILA A
Sbjct: 6 TGQNLPWVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAK 65
Query: 69 ELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGA 127
++ P + V+ELNASDDRGI +VR +I FA + G K+++LDEAD+MT A
Sbjct: 66 QMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGP-KLIILDEADAMTNDA 124
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
Q ALRR +E Y+ + RF + CN KII +QSRC RF+ L ++I+ RL +V E
Sbjct: 125 QNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEG 184
Query: 188 VPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNV 247
V G++A++ + GDMR+ LN LQ+T+ +R V ++NV+ P + +++ +
Sbjct: 185 VKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWL 244
Query: 248 LEGKFDDACSGLKQLYDL----GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
L AC K + DL G + +DI+ + II+ ++ + + + + A R
Sbjct: 245 LNENDFSAC--FKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEAR 302
Query: 304 ICDGVGSYLQLCGLLAKLSIVRETAK 329
+ G ++L L+A I R+ K
Sbjct: 303 LASGSSERVELAALIASFQIARDQVK 328
>gi|48097300|ref|XP_393747.1| PREDICTED: replication factor C subunit 5-like [Apis mellifera]
Length = 328
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/325 (35%), Positives = 187/325 (57%), Gaps = 3/325 (0%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
+S + + ++PWVEKYRP K+ D++ + + + + + +P+L+ GPPGTGKT++I
Sbjct: 2 NSKPTQSTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDENLLPHLLFYGPPGTGKTSTI 61
Query: 64 LALAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
LA A +L + V+E+NASDDRGI++VR +I FA G K+++LDEAD+
Sbjct: 62 LACARKLYTSAQFNSMVLEMNASDDRGINIVRGQILSFASTGTMYKSG-FKLIILDEADA 120
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT AQ ALRR +E Y+++ RF + CN SKII +QSRC RF LS ++IL RL +
Sbjct: 121 MTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSIDQILPRLDTI 180
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
++EE + +G +A+I + GDMR+ LN LQ+T+ F V +ENV+ P P+ +KN
Sbjct: 181 IKEENLNVTEDGKQALITLSGGDMRKVLNVLQSTWLAFGAVTEENVYSCVGHPLPIDIKN 240
Query: 243 MVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAH 301
+V + ++ ++ + G + DI+T L I E + + ++ + +
Sbjct: 241 IVNWLFNESYELCYCKIQDIKLKKGLALQDILTELHLFINKIEFPDSILIDLIIKLAEIE 300
Query: 302 MRICDGVGSYLQLCGLLAKLSIVRE 326
R+ G +QL L++ R+
Sbjct: 301 KRVSIGCSEAVQLNALVSAFQNARD 325
>gi|116753581|ref|YP_842699.1| replication factor C small subunit [Methanosaeta thermophila PT]
gi|116665032|gb|ABK14059.1| replication factor C small subunit [Methanosaeta thermophila PT]
Length = 305
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 114/297 (38%), Positives = 179/297 (60%), Gaps = 2/297 (0%)
Query: 28 VGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD 87
+G + V RL N+P+L+ +GPPG GKT + +++ E+ G +R+ +ELNASD+
Sbjct: 1 MGQPEIVRRLKSYVATRNLPHLLFSGPPGVGKTAAAISIVREIFGEGWRDNFIELNASDE 60
Query: 88 RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALA 147
RGIDVVR K+K FA + L + KV+ LDEAD++T+ AQ ALRRTME YS + RF L+
Sbjct: 61 RGIDVVRTKVKDFA-RMAPLGGAEFKVIFLDEADALTSDAQSALRRTMERYSATCRFILS 119
Query: 148 CNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMR 207
CN SSKIIEPIQSRCA+ RF L+ + I R+ + ++E V +G+EAI + A GDMR
Sbjct: 120 CNYSSKIIEPIQSRCAVYRFRALTPDAIEKRIRYIAEQEGVEVTEDGIEAINYVARGDMR 179
Query: 208 QALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDL-G 266
+A+N LQA V+ ++++ P ++N+++ + G F A + L L + G
Sbjct: 180 KAINALQAAALISDKVDMNTIYQITSMARPEQIRNLIKMAISGDFAGARNELDDLLLVQG 239
Query: 267 YSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSI 323
S D++ + R + + ++ + K+ + G RI +G +QL L+A +++
Sbjct: 240 LSGQDVVVQIHREMLDLDVPDADKVRMINRIGEIDFRITEGANERIQLEALIAYMAL 296
>gi|403160320|ref|XP_003320851.2| replication factor C subunit 3/5 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169507|gb|EFP76432.2| replication factor C subunit 3/5 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 352
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/329 (34%), Positives = 187/329 (56%), Gaps = 10/329 (3%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
+S +S +PWVEKYRP+ + D+V + D + + +P+L+ GPPGTGKT++I
Sbjct: 20 ASKPASKEHLPWVEKYRPSTLDDVVSHQDIIQTIQKFISANQLPHLLFYGPPGTGKTSTI 79
Query: 64 LALAHELLGP--NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
LA+A +L +++ ++ELNASDDRGIDVVR +IK FA ++ G K+++LDEAD
Sbjct: 80 LAVARQLFQTPMSFKNNILELNASDDRGIDVVREQIKNFASARMVFSSG-FKLIILDEAD 138
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
MT AQ ALRR +E Y+ + RF + CN ++I IQSRC RF L EI R+
Sbjct: 139 QMTQAAQSALRRVIEQYTKNVRFCIICNYVNRINPAIQSRCTRFRFGPLDHPEIERRIAH 198
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
V E V +G +A++ GDMR+ LN +QA +SG+ V+++ V++ PHP ++
Sbjct: 199 VADAESVKISDDGRKALLNLCKGDMRRVLNVMQACHSGYGKVDEDAVYECTGSPHPKQIE 258
Query: 242 NMVRNVLEGKFDDACSGLKQLYDL----GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
+V +++ +F + K++ D+ G + DII+ ++ ++ ++ ++ + +
Sbjct: 259 KIVESMMNDEFQ---TSFKRIQDIKINYGLALQDIISGIYDYLRTIVFEKNAQIYILDQL 315
Query: 298 GFAHMRICDGVGSYLQLCGLLAKLSIVRE 326
R+ G +QL LL I E
Sbjct: 316 SQIEHRLSTGATEKIQLSSLLGSFRIAVE 344
>gi|366988323|ref|XP_003673928.1| hypothetical protein NCAS_0A09890 [Naumovozyma castellii CBS 4309]
gi|342299791|emb|CCC67547.1| hypothetical protein NCAS_0A09890 [Naumovozyma castellii CBS 4309]
Length = 336
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 180/309 (58%), Gaps = 8/309 (2%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D+ G + V + +G +P+L+ GPPGTGKT++I+ALA E+
Sbjct: 12 NLPWVEKYRPETLDDVYGQTEVVTTVRKFLAEGKLPHLLFYGPPGTGKTSTIVALAREIY 71
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G NY V+ELNASDDRGIDVVRN+IK FA + G K+++LDEAD+MT AQ AL
Sbjct: 72 GRNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG-FKLIILDEADAMTNAAQNAL 130
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR +E Y+ +TRF + N S K+ + SRC RF L E I R+ V+ E +
Sbjct: 131 RRIIEKYTKNTRFCILANYSHKLTPALLSRCTRFRFQPLPREAIEMRIANVLVHENLKLS 190
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGF-----RFVNQENVFKVCDQPHPLHVKNMVRN 246
E EA+I + GDMR+ LN LQA+ + ++ E +++ C P P +K ++++
Sbjct: 191 DEAKEALITLSQGDMRRVLNVLQASKATLDDPVKDEIDAEVIYECCGAPRPNDLKTVLKS 250
Query: 247 VLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHL-KLEFMKEAGFAHMRI 304
+LE + A L ++ L G + D+I + +I+++YE+ L ++ + + G I
Sbjct: 251 ILEDDWSTAYYTLTKIRSLKGLALIDLIEGIVKILEDYELKNELTRITLLTKLGDIEYAI 310
Query: 305 CDGVGSYLQ 313
G +Q
Sbjct: 311 SKGGNEKIQ 319
>gi|427798817|gb|JAA64860.1| Putative replication factor c activator 1 5, partial [Rhipicephalus
pulchellus]
Length = 314
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/314 (36%), Positives = 185/314 (58%), Gaps = 3/314 (0%)
Query: 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
S++ ++PWVEKYRP K+ D++ + D ++ +G ++ +P+L+ GPPGTGKT++ILA
Sbjct: 2 SAATTNLPWVEKYRPQKLDDLIAHEDIISTIGRFIKEDKLPHLLFYGPPGTGKTSTILAC 61
Query: 67 AHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
A ++ P + V+ELNASDDRGI +VR +I FA K G K++VLDEAD+MT
Sbjct: 62 AQQIYSPKEFTSKVLELNASDDRGIGIVRGEILSFASTKTIFNTG-FKLIVLDEADAMTN 120
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRR +E ++ + RF L CN SKII +QSRC RF L+ ++ R+ V+ +
Sbjct: 121 DAQNALRRVIEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLTAAQMSPRIDHVITQ 180
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E++ +G +A++ A GDMR+ALN LQ+T F VN+ NV+ P + ++V
Sbjct: 181 ERLTVTADGKKALMDLAQGDMRKALNILQSTSMAFDEVNETNVYLCVGHPLKEDISDIVS 240
Query: 246 NVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRI 304
+L F+ + + + +L G + D++T + + E+ + +K+ + + R+
Sbjct: 241 TLLNEDFEYSYNHINKLKVGKGLALQDVLTQVHLYVHRIELPDKVKMYLIDKMAEIEYRL 300
Query: 305 CDGVGSYLQLCGLL 318
G +QL L+
Sbjct: 301 AAGTSEKIQLSSLI 314
>gi|395834095|ref|XP_003790050.1| PREDICTED: replication factor C subunit 5 [Otolemur garnettii]
Length = 456
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/317 (37%), Positives = 181/317 (57%), Gaps = 3/317 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D++ + D ++ + + +P+L+ GPPGTGKT++ILA A L
Sbjct: 135 NLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACAKRLY 194
Query: 72 -GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT AQ A
Sbjct: 195 KDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNA 253
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+EEKV
Sbjct: 254 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDI 313
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++ +L
Sbjct: 314 SEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNH 373
Query: 251 KFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
F A + +L L G + DI+T + + + +++ + + R+ G
Sbjct: 374 DFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIYLLTKMADIEYRLSVGTN 433
Query: 310 SYLQLCGLLAKLSIVRE 326
+QL L+A + R+
Sbjct: 434 EKIQLSSLIAAFQVTRD 450
>gi|291400267|ref|XP_002716498.1| PREDICTED: replication factor C 4 [Oryctolagus cuniculus]
Length = 364
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 127/330 (38%), Positives = 188/330 (56%), Gaps = 14/330 (4%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS+ + A +PWVEKYRP V ++ + V+ L ++PNL+ GPPGTGKT+
Sbjct: 27 GSSAETKKAKPVPWVEKYRPKCVDEVAFQEEVVSVLKKSLEGADLPNLLFYGPPGTGKTS 86
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP +R V+ELNASD+RGI VVR K+K FAQ V+ PP
Sbjct: 87 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--F 144
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD
Sbjct: 145 KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD 204
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFK 230
+ RL+ + ++E V EG+ ++ ++GD+R+A+ LQ+ +G + V + +
Sbjct: 205 KIQQQRLLDIAEKENVIISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTENVITD 264
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHL 289
+ P + + G FD +K L D G++ T ++ L +++N ++++
Sbjct: 265 IAGVIPPETINGIFAACQGGSFDKLEGVVKDLIDEGHAATQVVNQLHDVVVENDDLSDKQ 324
Query: 290 KLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
K ++ + DG +LQL L A
Sbjct: 325 KSIITEKLAEVDKCLADGADEHLQLLSLCA 354
>gi|71745690|ref|XP_827475.1| replication factor C subunit 3 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70831640|gb|EAN77145.1| replication factor C, subunit 3, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261331678|emb|CBH14672.1| replication factor C, subunit 3, putative [Trypanosoma brucei
gambiense DAL972]
Length = 357
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 183/327 (55%), Gaps = 16/327 (4%)
Query: 13 IPWVEKYRPTKVCDIVGN---LDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
+PWVEKYRPT + D+V + LD RL G+MP+L+ GPPGTGKTT+I A AH
Sbjct: 18 LPWVEKYRPTTLDDVVAHEEILDTTRRL---MNSGSMPHLLFYGPPGTGKTTTIKACAHH 74
Query: 70 LLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTL---PPGKH-----KVVVLDEA 120
L G R V+E+NASDDRGIDVVR +++ FA PG K+V+LDEA
Sbjct: 75 LFGKERLRANVLEMNASDDRGIDVVRQQVREFASTSSIFFQNNPGNQTVTNFKLVILDEA 134
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D M++ AQ ALRR +E ++ + RF + CN +KII +QSRC RFS + +L RL
Sbjct: 135 DQMSSDAQAALRRIIEKFTKNVRFCILCNHINKIIPALQSRCTRFRFSPVKKSAMLPRLK 194
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
++ +EE VP+ EGL + +DGDMR+ LN +QA+ + +E+V++ P P V
Sbjct: 195 LIAREEGVPFTDEGLISAFRLSDGDMRRCLNTMQASSMSAGEITEESVYRTTGNPTPTDV 254
Query: 241 KNMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGF 299
+ MV ++L + + ++QL D G S D++ + I+ ++ + K + +
Sbjct: 255 RVMVGDMLSHNYATSWEKVQQLVVDKGVSTADLVREVHLIVMAMDLPQDCKCFLLIKLAD 314
Query: 300 AHMRICDGVGSYLQLCGLLAKLSIVRE 326
G + + G+L +V+E
Sbjct: 315 VEYYAAGGTREMINIGGVLGAFQLVKE 341
>gi|431914245|gb|ELK15503.1| Replication factor C subunit 5 [Pteropus alecto]
Length = 345
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 120/321 (37%), Positives = 183/321 (57%), Gaps = 7/321 (2%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA A +L
Sbjct: 20 NLPWVEKYRPQALNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLY 79
Query: 72 -GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT AQ A
Sbjct: 80 KDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNA 138
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+EEKV
Sbjct: 139 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDI 198
Query: 191 VPEGLEAII----FTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
+G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++
Sbjct: 199 SEDGMKALVTLSKTLSSGDMRRALNILQSTSMAFGKVTEETVYTCTGHPLKSDIANILDW 258
Query: 247 VLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
+L F A + +L L G + DI+T + + + +++ + + R+
Sbjct: 259 MLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLS 318
Query: 306 DGVGSYLQLCGLLAKLSIVRE 326
G +QL L+A + R+
Sbjct: 319 VGTSEKIQLSSLIAAFQVTRD 339
>gi|399219086|emb|CCF75973.1| unnamed protein product [Babesia microti strain RI]
Length = 340
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/319 (36%), Positives = 191/319 (59%), Gaps = 17/319 (5%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + ++ ++ V+ L I + NMP+LI GPPGTGKT++ LALA +L G
Sbjct: 15 LPWVEKYRPKTISEVSHQINPVSALNQIVKTLNMPHLIFYGPPGTGKTSAALALARQLFG 74
Query: 73 PN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT-----------LPPGKHKVVVLDEA 120
+ +E ++ELNASDDRGIDVVR KIK +A+ ++ +PP K +V+LDEA
Sbjct: 75 KDGLKERILELNASDDRGIDVVREKIKTYARLNISKNRINPETGKPMPPWK--IVILDEA 132
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D MT+ AQ ALRR +E YS TRF CN KII+P+ SRC++ RF ++ + +SRL+
Sbjct: 133 DMMTSDAQAALRRAIENYSTITRFIFICNYIYKIIDPLCSRCSLQRFQPIAKQAQISRLV 192
Query: 181 VVVQEEKV-PYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH 239
+ ++EK+ + E +EA++ + GD+R+++ LQ S ++ + ++ V+ + P +
Sbjct: 193 FICEQEKISSFTNEAMEALVRVSQGDLRRSITLLQTIGSLYKNITEDIVYDIAGIPPRVV 252
Query: 240 VKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKN-YEMAEHLKLEFMKEAG 298
V +++++ +G DD + +K + D G+ +DI++ + I+ N E+ + K E
Sbjct: 253 VIDLLKSC-KGTMDDVDTAVKIIIDQGWDVSDIMSQICDIVANDVELDDISKARISLELS 311
Query: 299 FAHMRICDGVGSYLQLCGL 317
+ G Y QL L
Sbjct: 312 NRDFALFQGASQYFQLLSL 330
>gi|159110203|ref|XP_001705363.1| Replication factor C, subunit 4 [Giardia lamblia ATCC 50803]
gi|157433446|gb|EDO77689.1| Replication factor C, subunit 4 [Giardia lamblia ATCC 50803]
Length = 322
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 120/312 (38%), Positives = 181/312 (58%), Gaps = 3/312 (0%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+P++E+YRP + ++GN + +ARL A GN+PN++ AG PG GKTT L LA+++LG
Sbjct: 4 LPFIERYRPRTLDGLIGNPEILARLRYFAAQGNLPNILFAGGPGLGKTTIALCLANQMLG 63
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+ A +ELNASD+R + +R K+K FAQK+VTLP G K+V LDE D+MT AQQ LR
Sbjct: 64 AHRSVAFLELNASDERNVSDIRAKVKTFAQKQVTLPAGIQKLVFLDECDAMTEAAQQVLR 123
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R M+ + STRF LACN SK+IEP+QSRC ++R + E++ L + ++E V
Sbjct: 124 RIMDDETGSTRFCLACNNISKVIEPVQSRCCVLRIMPATQAELIKYLQEICEKEGVKSDT 183
Query: 193 EGLEAIIFTADGDMRQALNNLQATY-SGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
E L+ +I + D+R LN+LQ + + + V K + +++ + GK
Sbjct: 184 EALKELISISGNDVRSCLNSLQLVADANNKVITVAGVQKALSTIDVKVIDQVMKLLTSGK 243
Query: 252 FDDACSGLKQLYDLGYSPTDIITTLFRIIKN--YEMAEHLKLEFMKEAGFAHMRICDGVG 309
FDD + + GY+ DI +FR N E+ + ++ ++ H + V
Sbjct: 244 FDDGWMLIDNQLNEGYNYDDIYNAMFRYALNSETEINDVVRASMLRILASLHAKSKTTVS 303
Query: 310 SYLQLCGLLAKL 321
S LQLC LLA+L
Sbjct: 304 SPLQLCRLLAEL 315
>gi|313225768|emb|CBY07242.1| unnamed protein product [Oikopleura dioica]
Length = 329
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 122/323 (37%), Positives = 190/323 (58%), Gaps = 3/323 (0%)
Query: 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
S +PWVEKYRP K+ D++ + + ++ + + +P+L+ GPPGTGKT++ILA+
Sbjct: 2 SGKQIGLPWVEKYRPNKLDDLISHTEIISTIKKFIENEQLPHLLFYGPPGTGKTSTILAV 61
Query: 67 AHELLGP-NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
A EL G N ++ V+ELNASD RGIDVVRN+I FA + +L KV++LDE D+MT
Sbjct: 62 AKELYGAKNLKKMVLELNASDARGIDVVRNEILNFASSR-SLHCKGFKVIILDECDAMTR 120
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRR ME ++ + RF L CN K+I IQSRC RF+ LS E+++ R+ VV+E
Sbjct: 121 DAQAALRRVMEKFTKNVRFCLICNYLGKLIPAIQSRCTRFRFAPLSVEQMMPRINHVVEE 180
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E + G++ ++ A+GDMR++LN LQA++ F V + V+KV +P ++ M+
Sbjct: 181 EGIDIDQNGMDLLLKMAEGDMRRSLNILQASHLAFNKVTDDIVYKVTGRPRRNDIRRMME 240
Query: 246 NVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRI 304
+L +++L + G + D++T L+ I ++ + K E + R+
Sbjct: 241 WLLNQDIKYCMDSIEELMLENGIALNDVLTDLYEEICEADLPDIPKAEILSALADIEYRL 300
Query: 305 CDGVGSYLQLCGLLAKLSIVRET 327
G +QL ++A S VR T
Sbjct: 301 NIGATEKIQLAVIVAAFSKVRNT 323
>gi|50294179|ref|XP_449501.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528815|emb|CAG62477.1| unnamed protein product [Candida glabrata]
Length = 331
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 112/316 (35%), Positives = 184/316 (58%), Gaps = 7/316 (2%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D+ G + V + ++G +P+L+ GPPGTGKT++I+ALA ++
Sbjct: 8 NLPWVEKYRPQTLDDVYGQREVVGTVKKFVQEGKLPHLLFYGPPGTGKTSTIVALAKDIY 67
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G NY V+ELNASDDRGIDVVRN+IK FA + G K+++LDEAD+MT AQ AL
Sbjct: 68 GKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG-FKLIILDEADAMTNAAQNAL 126
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR +E Y+ +TRF + N S KI + SRC RF L ++ + R+ V+ E +
Sbjct: 127 RRIIEKYTKNTRFCILANYSHKITPALLSRCTRFRFQPLPNDAVEKRMANVLVHEHLRIS 186
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRF----VNQENVFKVCDQPHPLHVKNMVRNV 247
P EA++ ++GDMR+ LN LQA+ + + E +++ C P P ++ +++++
Sbjct: 187 PAAKEALLELSNGDMRRVLNVLQASKATLESPEDEITDEVIYECCGAPRPQDIQTILKSI 246
Query: 248 LEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEM-AEHLKLEFMKEAGFAHMRIC 305
LE + A L ++ G + D+I ++ +I++ Y++ E ++ + + G I
Sbjct: 247 LEDDWSTAYDTLTRIRSSNGLALIDLIESIVKILEEYKLKKEETRISLLSQLGDIEYAIS 306
Query: 306 DGVGSYLQLCGLLAKL 321
G +Q ++ +
Sbjct: 307 KGGNDKIQSSAVIGAI 322
>gi|225459625|ref|XP_002285874.1| PREDICTED: replication factor C subunit 4 isoform 1 [Vitis
vinifera]
gi|302141781|emb|CBI18984.3| unnamed protein product [Vitis vinifera]
Length = 341
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 174/310 (56%), Gaps = 9/310 (2%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP +V D+ + V L N P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 74 N-YREAVMELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGKHKVVVLDEADSMTA 125
Y+ V+ELNASDDRGI+VVR KIK FA ++ P +K+++LDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIIILDEADSMTE 129
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS+E + SR++ + +E
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKE 189
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMV 244
E++ E L + + GD+R+A+ LQ F ++ +++ V V+ +
Sbjct: 190 EELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVVPQHVVQALF 249
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRI 304
G FD A + + GY + ++ LF ++ ++++ K K A +
Sbjct: 250 AACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEADISDEQKARICKRLAEADKCL 309
Query: 305 CDGVGSYLQL 314
DG YLQL
Sbjct: 310 VDGADEYLQL 319
>gi|358059664|dbj|GAA94596.1| hypothetical protein E5Q_01248 [Mixia osmundae IAM 14324]
Length = 414
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/325 (36%), Positives = 178/325 (54%), Gaps = 19/325 (5%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + D+V + D V+ + +P+L+ GPPGTGKT++ILA+A ++ G
Sbjct: 78 LPWVEKYRPATLDDVVSHKDIVSTIDKFISLNRLPHLLFYGPPGTGKTSTILAVARKIYG 137
Query: 73 -----------------PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVV 115
+ R V+ELNASDDRGIDVVR++IK FA ++ G +K++
Sbjct: 138 GTGNSIRGGVSGKGKEGSSMRNNVLELNASDDRGIDVVRDQIKNFASTRMIFSSG-YKLI 196
Query: 116 VLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEI 175
+LDEAD MT AQ ALRR +E Y+ + RF + CN ++II +QSRC RF L E+
Sbjct: 197 ILDEADMMTTTAQNALRRVIEQYTKNVRFCIICNYVNRIIPAVQSRCTRFRFGPLETTEV 256
Query: 176 LSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQP 235
R+ VV E V +G EA++ + GDMR+ALN LQA +S + V++ ++ P
Sbjct: 257 DRRIQHVVDAESVNLTQDGREALLKLSKGDMRRALNVLQACHSAYPVVDEGAIYACTGNP 316
Query: 236 HPLHVKNMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFM 294
HP + MV +++ +F A + + D G + DII L + +M H ++ +
Sbjct: 317 HPADIDEMVTSMMSDEFQTAYQRVVAIKTDKGLALQDIIAGLGEALSGLDMPPHARIYLL 376
Query: 295 KEAGFAHMRICDGVGSYLQLCGLLA 319
R+ G LQ+ LL
Sbjct: 377 DHLAQIEHRLSTGGSEKLQMTALLG 401
>gi|350591807|ref|XP_003483338.1| PREDICTED: replication factor C subunit 4-like [Sus scrofa]
Length = 364
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 128/329 (38%), Positives = 187/329 (56%), Gaps = 14/329 (4%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
SS + A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT++
Sbjct: 28 SSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 63 ILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKHK 113
ILA A EL GP +R V+ELNASD+RGI VVR K+K FAQ V+ PP K
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FK 145
Query: 114 VVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDE 173
+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD+
Sbjct: 146 IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDK 205
Query: 174 EILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFKV 231
RL+ + +E V EG+ ++ ++GD+R+A+ LQ+ +G + V ++ + +
Sbjct: 206 IQQQRLLDIADKEHVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKMITDI 265
Query: 232 CDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLK 290
+ ++ G FD + +K L D G++ T + L +++N +++ K
Sbjct: 266 AGVIPTETIDGVLAACQSGSFDKLEAVVKDLIDEGHAATQFVNQLHDVVVENDNLSDKQK 325
Query: 291 LEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
++ A + DG +LQL L A
Sbjct: 326 SVITEKLAEADKCLADGADEHLQLISLCA 354
>gi|147858312|emb|CAN83520.1| hypothetical protein VITISV_019805 [Vitis vinifera]
Length = 341
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 174/310 (56%), Gaps = 9/310 (2%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP +V D+ + V L N P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 74 N-YREAVMELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGKHKVVVLDEADSMTA 125
Y+ V+ELNASDDRGI+VVR KIK FA ++ P +K+++LDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAXVAVGSGHRQGGYPCPPYKIIILDEADSMTE 129
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS+E + SR++ + +E
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKE 189
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMV 244
E++ E L + + GD+R+A+ LQ F ++ +++ V V+ +
Sbjct: 190 EELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVVPQHVVQALF 249
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRI 304
G FD A + + GY + ++ LF ++ ++++ K K A +
Sbjct: 250 AACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEADISDEQKARICKRLAEADKCL 309
Query: 305 CDGVGSYLQL 314
DG YLQL
Sbjct: 310 VDGADEYLQL 319
>gi|110590957|pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
gi|110590958|pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
gi|110590959|pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
gi|110590960|pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 105/219 (47%), Positives = 151/219 (68%), Gaps = 5/219 (2%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WVEKYRP + ++VG + + RL N+P+L+ +GPPGTGKT + +ALA +L G N
Sbjct: 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN 66
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGAQQALR 132
+R+ +E+NASD+RGIDVVR+KIK FA+ T P G K++ LDEAD++TA AQ ALR
Sbjct: 67 WRDNFIEMNASDERGIDVVRHKIKEFAR---TAPIGGAPFKIIFLDEADALTADAQAALR 123
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME+YS S RF L+CN S+IIEPIQSRCA+ RF + E + RL+ + ++E V
Sbjct: 124 RTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITE 183
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKV 231
+GLEA+I+ + GD R+A+N LQ + V+ + ++++
Sbjct: 184 DGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQI 222
>gi|91081833|ref|XP_974716.1| PREDICTED: similar to replication factor C, 37-kDa subunit,
putative [Tribolium castaneum]
gi|270006308|gb|EFA02756.1| hypothetical protein TcasGA2_TC008489 [Tribolium castaneum]
Length = 355
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 135/333 (40%), Positives = 188/333 (56%), Gaps = 32/333 (9%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP V D+V +AV+ L ++PNL+ GPPGTGKT++ILA A +L G
Sbjct: 30 VPWVEKYRPRTVSDVVEQSEAVSVLQQCISGADLPNLLFYGPPGTGKTSTILAAARQLFG 89
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKV--TLPPGK----HKVVVLDEADSMTAG 126
YR+ ++ELNASD+RGI V+R+K+K FAQ T P GK K+V+LDEADSMT
Sbjct: 90 DYYRDRILELNASDERGIQVIRDKVKTFAQLTASGTRPDGKPCPPFKIVILDEADSMTHA 149
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQ ALRRTME S STRF L CN S+IIEP+ SRC RF L++ IL RL + +E
Sbjct: 150 AQAALRRTMEKESRSTRFCLICNYVSRIIEPLTSRCTKFRFKPLNEAMILERLSFICGKE 209
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATY----SGFRFVNQENVFKVCDQPHPLHVKN 242
V + L A++ T+ GDMR+A+ +LQ+ SG ++ ++V L V
Sbjct: 210 NVECSDKTLAALVETSGGDMRRAITSLQSCAKLKGSGVP-ISIDDV---------LEVTG 259
Query: 243 MVRNVLEGKFDDACSG---------LKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLE 292
+V KF D C LK++ Y+ + I+ L + I N+E + K
Sbjct: 260 VVPERWLKKFLDVCKTKDQNKLQAFLKEMMFEAYAASQILEQLNQYIVNFEGFTDQQKAI 319
Query: 293 FMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVR 325
++ G ++ DG ++QL L SI+R
Sbjct: 320 IGQKLGVVSFKLQDGGSEFIQLLDL--GCSIIR 350
>gi|326429974|gb|EGD75544.1| replication factor C 4 [Salpingoeca sp. ATCC 50818]
Length = 345
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 127/324 (39%), Positives = 181/324 (55%), Gaps = 9/324 (2%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
S S+ + PWVEKYRP D+ +A L +MP+L+ GPPGTGKT++IL
Sbjct: 15 SKGSTLAEKPWVEKYRPRTTADVAHQSQVIATLRATISGADMPHLLFYGPPGTGKTSTIL 74
Query: 65 ALAHELLGPNY-REAVMELNASDDRGIDVVRNKIKMFAQKKVT-----LPPGKHKVVVLD 118
AL+ EL GP +E V+ELNASD+RGI VVR KIK FA V+ P K+++LD
Sbjct: 75 ALSRELFGPQLMKERVLELNASDERGISVVREKIKTFASTSVSKGVDGYPCPPFKIIILD 134
Query: 119 EADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSR 178
EAD+MTA AQ ALRRTME YSN TRF L CN S+IIEP+ SRCA RF LS + ++ R
Sbjct: 135 EADAMTAAAQSALRRTMEKYSNVTRFCLICNYISRIIEPLASRCAKFRFKPLSRDTLVGR 194
Query: 179 LMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFKVCDQPH 236
L + +E V E L II DGDMRQA+ LQ+ G V +V ++
Sbjct: 195 LQHIRDKEDVQCSDEVLARIIDLVDGDMRQAITFLQSASRLCGSSGVEVHHVEEIAGAIP 254
Query: 237 PLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFMK 295
+ +++ +G F++ ++ + G+S I+ L + +++ ++++ K +
Sbjct: 255 NAVMTDLLDKCRQGSFENLQETVQSILLDGFSADTIVEELLQLVVEADDISDTQKADIAH 314
Query: 296 EAGFAHMRICDGVGSYLQLCGLLA 319
+ R+ DG LQ+ L A
Sbjct: 315 KLAQVDKRLVDGADEELQIMDLCA 338
>gi|388454302|ref|NP_001253606.1| replication factor C subunit 4 [Macaca mulatta]
gi|355560107|gb|EHH16835.1| hypothetical protein EGK_12194 [Macaca mulatta]
gi|380815324|gb|AFE79536.1| replication factor C subunit 4 [Macaca mulatta]
gi|383420509|gb|AFH33468.1| replication factor C subunit 4 [Macaca mulatta]
Length = 363
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 125/329 (37%), Positives = 184/329 (55%), Gaps = 13/329 (3%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS + A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 27 GSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 86
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP +R V+ELNASD+RGI VVR K+K FAQ V+ PP
Sbjct: 87 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--F 144
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD
Sbjct: 145 KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD 204
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFK 230
+ RL+ + ++E V EG+ ++ ++GD+R+A+ LQ+ +G + + + +
Sbjct: 205 KIQQQRLLDIAEKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITERVITD 264
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLK 290
+ + + G FD + +K L D G++ T ++ L ++ +++ K
Sbjct: 265 IAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQFVSQLHDVVVENNLSDKQK 324
Query: 291 LEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
++ + DG +LQL L A
Sbjct: 325 SIITEKLAEVDKCLADGADEHLQLISLCA 353
>gi|448515699|ref|XP_003867395.1| Rcf3 heteropentameric replication factor C subunit [Candida
orthopsilosis Co 90-125]
gi|380351734|emb|CCG21957.1| Rcf3 heteropentameric replication factor C subunit [Candida
orthopsilosis]
Length = 333
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 112/291 (38%), Positives = 177/291 (60%), Gaps = 7/291 (2%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + ++ G D V + G +P+L+ GPPGTGKT++I+ALA E+
Sbjct: 8 NLPWVEKYRPENLTEVYGQQDIVNTIRRFVETGKLPHLLFYGPPGTGKTSTIIALAREIY 67
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG---KHKVVVLDEADSMTAGAQ 128
GP+Y+ V+ELNASDDRGIDVVRN+IK FA + + K+++LDEAD+MT+ AQ
Sbjct: 68 GPHYKNMVLELNASDDRGIDVVRNQIKSFASTRQIFTSSSSPQFKLIILDEADAMTSVAQ 127
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKV 188
+LRR +E Y+ + RF + N S K+ + SRC RF + +E I SR+ V+ +EKV
Sbjct: 128 NSLRRIIERYTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEEAIRSRIDNVIIKEKV 187
Query: 189 PYVPEGLEAIIFTADGDMRQALNNLQATYSGF---RFVNQENVFKVCDQPHPLHVKNMVR 245
P+ L A++ + GDMR++LN LQA + ++ E ++ PHP ++ ++
Sbjct: 188 NITPDALNALLRLSQGDMRRSLNVLQACKAACGDDETIDIEMIYNCVGAPHPQDIEAVLD 247
Query: 246 NVLEGKFDDACSGL-KQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMK 295
++L+ + A L K D G + D+IT I+ +Y++ ++E++K
Sbjct: 248 SILKQDWTTAYLTLNKYKIDKGLALVDLITGFIEILNDYKVKPKTRIEYLK 298
>gi|229366198|gb|ACQ58079.1| Replication factor C subunit 5 [Anoplopoma fimbria]
Length = 335
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/317 (37%), Positives = 181/317 (57%), Gaps = 3/317 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP K+ D++ + D ++ + + +P+L+ GPPGTG+T++ILA A +L
Sbjct: 13 NLPWVEKYRPQKLDDLISHKDILSTIQKFISEDKLPHLLFYGPPGTGETSTILACAKQLY 72
Query: 72 GPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGIDVVR + FA + G K+V+LDEAD MT AQ A
Sbjct: 73 KEKEFTSMVLELNASDDRGIDVVRGPVLSFASTRTIFKRG-FKLVILDEADHMTQDAQNA 131
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E Y+ +TR L CN SKII +QSRC RF LS ++++ RL VVQ+E +
Sbjct: 132 LRRVIEKYTENTRLCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRLEYVVQQESIDI 191
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
P G++AI+ + GDMR++LN LQ+T + V ++ V+ P + N++ L
Sbjct: 192 NPGGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDTVYTCTGHPLRSDIANILDWSLNK 251
Query: 251 KFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
F A + QL L G + DI+T + +I + +++ + + R+ G
Sbjct: 252 DFTSAYKEILQLKTLKGLALNDILTEVHLLIHRVDFPPAIRIGLLIKLADIEHRLASGTN 311
Query: 310 SYLQLCGLLAKLSIVRE 326
+QL ++A VR+
Sbjct: 312 EKIQLSSMVAAFQAVRD 328
>gi|297612760|ref|NP_001066296.2| Os12g0176500 [Oryza sativa Japonica Group]
gi|10798806|dbj|BAB16441.1| replication factor C 37 kDa subunit [Oryza sativa Japonica Group]
gi|77553810|gb|ABA96606.1| Activator 1 37 kDa subunit, putative, expressed [Oryza sativa
Japonica Group]
gi|125535960|gb|EAY82448.1| hypothetical protein OsI_37665 [Oryza sativa Indica Group]
gi|125578677|gb|EAZ19823.1| hypothetical protein OsJ_35406 [Oryza sativa Japonica Group]
gi|215737297|dbj|BAG96226.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255670097|dbj|BAF29315.2| Os12g0176500 [Oryza sativa Japonica Group]
Length = 339
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 187/327 (57%), Gaps = 15/327 (4%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP +V D+ + V L + ++P+++ GPPGTGKTT+ LA+A++L GP
Sbjct: 10 PWVEKYRPRQVKDVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGP 69
Query: 74 N-YREAVMELNASDDRGIDVVRNKIKMFAQ------KKVTLPPGKHKVVVLDEADSMTAG 126
Y+ V+ELNASDDRGI+VVR KIK FA +K P +K+++LDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTED 129
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS+E + +R++ + EE
Sbjct: 130 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEE 189
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMVR 245
+ + L + ++GD+R+A+ LQ+ F ++ ++ V VK+++
Sbjct: 190 GLSLDAQALATLSTISNGDLRRAITYLQSAARLFGSSISSTDLISVSGAIPEDVVKSLLA 249
Query: 246 NVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRI 304
+ G+FD A + + GY + +I+ +I N ++ + K K+ G A +
Sbjct: 250 SCKSGEFDVANKEVNNIIADGYPVSQLISQFLDVIVNADDIPDEQKARICKKLGEADKCL 309
Query: 305 CDGVGSYLQLCGLLAKLSIVRETAKAV 331
DG YLQL L + ET +A+
Sbjct: 310 VDGADEYLQL------LDVASETIRAL 330
>gi|291002133|ref|XP_002683633.1| predicted protein [Naegleria gruberi]
gi|284097262|gb|EFC50889.1| predicted protein [Naegleria gruberi]
Length = 351
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 124/340 (36%), Positives = 198/340 (58%), Gaps = 21/340 (6%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
M ++SSSS + W+EKYRP ++ D++ + + ++ + + G +P+L+L GPPGTGKT
Sbjct: 1 MPENNSSSSDAKM-WIEKYRPHELTDLLSHTEIISTIQRLIDGGKLPHLLLYGPPGTGKT 59
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQ---------KKVTLPPGK 111
+++LA+A +L G + V+ELNASDDRGIDV+RN+IK FA +K T P
Sbjct: 60 STVLAIAKKLFGNRLTQNVLELNASDDRGIDVIRNEIKDFASTKGLKFFTAQKDTTP--D 117
Query: 112 HKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLS 171
K+++LDEAD MT AQ ALRRT+E YS + RF L CN +KII +QSRC RFS L
Sbjct: 118 IKLIILDEADQMTKDAQAALRRTIEKYSKNVRFCLICNYVNKIIPALQSRCTRFRFSPLK 177
Query: 172 DEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKV 231
E++SRL + +EE V Y GL+AI ++GDMR+ +N LQ+T+ F + ++NV
Sbjct: 178 KHEVVSRLEEICKEENVIYNQVGLDAIYRLSNGDMRKCVNILQSTFMSFGQITEDNVHMC 237
Query: 232 CDQPHPLHVKNMVRNVLEGKFDDACS-GLKQLYDL----GYSPTDIITTLFRIIKNYEMA 286
P +K +R ++ F+D+ + K++ ++ G + DI+ + + +
Sbjct: 238 TGNP----LKEDIRLIINSLFNDSLADAYKKVMNIKTERGLALQDILRDIHPYVMKLNIP 293
Query: 287 EHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRE 326
+++ +++ R+ G LQ L++ I +E
Sbjct: 294 IAVRIYLLEKMSDIEYRLSLGTSESLQTMALISAFQIAKE 333
>gi|30584245|gb|AAP36371.1| Homo sapiens replication factor C (activator 1) 4, 37kDa [synthetic
construct]
gi|54697188|gb|AAV38966.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|60653953|gb|AAX29669.1| replication factor C 4 [synthetic construct]
gi|60654181|gb|AAX29783.1| replication factor C 4 [synthetic construct]
gi|60830868|gb|AAX36948.1| replication factor C 4 [synthetic construct]
gi|61367088|gb|AAX42950.1| replication factor C 4 [synthetic construct]
Length = 364
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 125/329 (37%), Positives = 185/329 (56%), Gaps = 13/329 (3%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS + A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 27 GSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 86
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP +R V+ELNASD+RGI VVR K+K FAQ V+ PP
Sbjct: 87 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--F 144
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD
Sbjct: 145 KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD 204
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFK 230
+ RL+ + ++E V EG+ ++ ++GD+R+A+ LQ+ +G + + ++ +
Sbjct: 205 KIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITD 264
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLK 290
+ + + G FD + +K L D G++ T ++ L ++ +++ K
Sbjct: 265 IAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQK 324
Query: 291 LEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
++ + DG +LQL L A
Sbjct: 325 SIITEKLAEVDKCLADGADEHLQLISLCA 353
>gi|355784873|gb|EHH65724.1| hypothetical protein EGM_02550 [Macaca fascicularis]
Length = 363
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 125/329 (37%), Positives = 184/329 (55%), Gaps = 13/329 (3%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS + A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 27 GSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 86
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP +R V+ELNASD+RGI VVR K+K FAQ V+ PP
Sbjct: 87 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--F 144
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD
Sbjct: 145 KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD 204
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFK 230
+ RL+ + ++E V EG+ ++ ++GD+R+A+ LQ+ +G + + + +
Sbjct: 205 KIQQQRLLDIAEKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITERVITD 264
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLK 290
+ + + G FD + +K L D G++ T ++ L ++ +++ K
Sbjct: 265 IAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQFVSQLHDVVVENNLSDKQK 324
Query: 291 LEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
++ + DG +LQL L A
Sbjct: 325 SIITEKLAEVDKCLADGADEHLQLISLCA 353
>gi|297672721|ref|XP_002814437.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pongo abelii]
gi|297672723|ref|XP_002814438.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pongo abelii]
gi|397470118|ref|XP_003806680.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pan paniscus]
gi|397470120|ref|XP_003806681.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pan paniscus]
gi|426343233|ref|XP_004038219.1| PREDICTED: replication factor C subunit 4 isoform 1 [Gorilla
gorilla gorilla]
gi|426343235|ref|XP_004038220.1| PREDICTED: replication factor C subunit 4 isoform 2 [Gorilla
gorilla gorilla]
gi|410253804|gb|JAA14869.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
Length = 363
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 125/329 (37%), Positives = 185/329 (56%), Gaps = 13/329 (3%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS + A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 27 GSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 86
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP +R V+ELNASD+RGI VVR K+K FAQ V+ PP
Sbjct: 87 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--F 144
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD
Sbjct: 145 KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD 204
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFK 230
+ RL+ + ++E V EG+ ++ ++GD+R+A+ LQ+ +G + + ++ +
Sbjct: 205 KIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITD 264
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLK 290
+ + + G FD + +K L D G++ T ++ L ++ +++ K
Sbjct: 265 IAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQK 324
Query: 291 LEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
++ + DG +LQL L A
Sbjct: 325 SIITEKLAEVDKCLADGADEHLQLISLCA 353
>gi|4506491|ref|NP_002907.1| replication factor C subunit 4 [Homo sapiens]
gi|31881687|ref|NP_853551.1| replication factor C subunit 4 [Homo sapiens]
gi|1703052|sp|P35249.2|RFC4_HUMAN RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 37 kDa subunit; Short=A1 37 kDa
subunit; AltName: Full=Activator 1 subunit 4; AltName:
Full=Replication factor C 37 kDa subunit; Short=RF-C 37
kDa subunit; Short=RFC37
gi|1498256|gb|AAB09785.1| replication factor C, 37-kDa subunit [Homo sapiens]
gi|16924323|gb|AAH17452.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|18645198|gb|AAH24022.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|22532479|gb|AAM97933.1| replication factor C (activator 1) 4 (37kD) [Homo sapiens]
gi|30582813|gb|AAP35633.1| replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|49168606|emb|CAG38798.1| RFC4 [Homo sapiens]
gi|60819475|gb|AAX36501.1| replication factor C 4 [synthetic construct]
gi|61362396|gb|AAX42213.1| replication factor C [synthetic construct]
gi|61362402|gb|AAX42214.1| replication factor C [synthetic construct]
gi|61363130|gb|AAX42340.1| replication factor C 4 [synthetic construct]
gi|119598575|gb|EAW78169.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo
sapiens]
gi|119598576|gb|EAW78170.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo
sapiens]
gi|123993605|gb|ABM84404.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123993735|gb|ABM84469.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123994261|gb|ABM84732.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123999624|gb|ABM87354.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|261860114|dbj|BAI46579.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
Length = 363
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 125/329 (37%), Positives = 185/329 (56%), Gaps = 13/329 (3%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS + A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 27 GSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 86
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP +R V+ELNASD+RGI VVR K+K FAQ V+ PP
Sbjct: 87 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--F 144
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD
Sbjct: 145 KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD 204
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFK 230
+ RL+ + ++E V EG+ ++ ++GD+R+A+ LQ+ +G + + ++ +
Sbjct: 205 KIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITD 264
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLK 290
+ + + G FD + +K L D G++ T ++ L ++ +++ K
Sbjct: 265 IAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQK 324
Query: 291 LEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
++ + DG +LQL L A
Sbjct: 325 SIITEKLAEVDKCLADGADEHLQLISLCA 353
>gi|126324700|ref|XP_001375103.1| PREDICTED: replication factor C subunit 5 [Monodelphis domestica]
Length = 342
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 117/317 (36%), Positives = 181/317 (57%), Gaps = 3/317 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + +++ + D ++ + + +P+L+L GPPGTGKT++ILA A +L
Sbjct: 21 NLPWVEKYRPQTLDELISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACARQLY 80
Query: 72 -GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT AQ A
Sbjct: 81 KDKEFNSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNA 139
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL V+ EEKV
Sbjct: 140 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIAEEKVDV 199
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G++A++ + GDMR+ALN LQ+T F V +E + P + N++ +L
Sbjct: 200 SEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETAYTCTGHPLKADIANILDWMLNQ 259
Query: 251 KFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
F A + +L L G + DI+T + + + +++ + + R+ G
Sbjct: 260 DFTSAYRNITELKTLKGLALHDILTEIHLFVHRVDFPPPVRIHLLIKMADIEHRLAVGTS 319
Query: 310 SYLQLCGLLAKLSIVRE 326
+QL L+A + R+
Sbjct: 320 EKIQLSSLIAAFQVTRD 336
>gi|145477489|ref|XP_001424767.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391833|emb|CAK57369.1| unnamed protein product [Paramecium tetraurelia]
Length = 351
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 189/317 (59%), Gaps = 9/317 (2%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP K+ D+ + V L + + GN+P+L+L GPPGTGKT++I+ALA +L G
Sbjct: 27 LPWVEKYRPNKIEDLAYQEEVVQSLQGVLKTGNLPHLLLHGPPGTGKTSTIIALAKQLFG 86
Query: 73 PN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG------KHKVVVLDEADSMTA 125
P+ +R+ V+ELNASDDRGI+VVRNK+K FA++ V P +K+++LDEADSMT
Sbjct: 87 PDFWRQRVLELNASDDRGINVVRNKVKKFAEQIVAKNPNPGFLCPSYKIIILDEADSMTN 146
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRR +E Y+ +TRF + CN +KIIEP+ SRC RF + + E + RL V
Sbjct: 147 DAQSALRRIIEDYATTTRFCIICNYITKIIEPLVSRCVKYRFKSIPENEQIERLKFVADS 206
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMV 244
E V Y + L+ ++ + GD+R+++N LQ++ + + + +N++ + ++ ++++V
Sbjct: 207 ESVTYNLDALKQLVVVSGGDLRKSVNMLQSSSTLYEKSINKKAINEISGFIPDEQIEDLV 266
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHMR 303
+ ++ GY+ +I ++ + + E K + M+ A +
Sbjct: 267 SVIQTKSIRSVQEECTRVIQQGYNIEQLILQFLDVVLATDTIKEKQKAKMMEIAAYTEKC 326
Query: 304 ICDGVGSYLQLCGLLAK 320
+ +G LQ+ L+A+
Sbjct: 327 LIEGSAEDLQIFNLMAQ 343
>gi|442754535|gb|JAA69427.1| Putative replication factor c subunit rfc5 [Ixodes ricinus]
Length = 328
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 181/317 (57%), Gaps = 3/317 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP K+ D++ + D ++ + + +P+L+ GPPGTGKT++ILA A ++
Sbjct: 10 NLPWVEKYRPNKLDDLIAHEDIISTINRFINEDRLPHLLFYGPPGTGKTSTILACARQIY 69
Query: 72 GPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
GP + V+ELNASDDRGI +VR +I FA K G K+++LDEAD+MT AQ A
Sbjct: 70 GPKEFGSMVLELNASDDRGIGIVRGEILNFASTKSIFKSG-FKLIILDEADAMTNDAQNA 128
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ + RF L CN SKII +QSRC RF LS ++ R+ V+++E++
Sbjct: 129 LRRVIEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLSLSQMSPRIEYVIEQERLTV 188
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G +A++ A GDMR+ALN LQ+T F V + NV++ P + NMV +L
Sbjct: 189 TDDGKKALMDLAQGDMRKALNILQSTSMAFEEVTENNVYQCVGLPLKSDISNMVITLLNE 248
Query: 251 KFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
F + + ++ G + D++T + + E +K+ + + R+ G
Sbjct: 249 DFAFSYDQINKVKVSKGLALQDVLTQIHLYVHRIEFPNEVKMYLIDKMAEIENRLAAGTS 308
Query: 310 SYLQLCGLLAKLSIVRE 326
+QL L+A R+
Sbjct: 309 EKIQLSSLIAAFQTARQ 325
>gi|354547265|emb|CCE43999.1| hypothetical protein CPAR2_502240 [Candida parapsilosis]
Length = 337
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 115/319 (36%), Positives = 183/319 (57%), Gaps = 11/319 (3%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + ++ G D V+ + G +P+L+ GPPGTGKT++I+ALA E+
Sbjct: 8 NLPWVEKYRPENLTEVYGQQDIVSTIRRFVETGKLPHLLFYGPPGTGKTSTIVALAREIY 67
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG---KHKVVVLDEADSMTAGAQ 128
GPNY+ V+ELNASDDRGIDVVRN+IK FA + + K+++LDEAD+MT+ AQ
Sbjct: 68 GPNYKNMVLELNASDDRGIDVVRNQIKSFASTRQIFTSSSSPQFKLIILDEADAMTSVAQ 127
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKV 188
+LRR +E Y+ + RF + N S K+ + SRC RF + + I SR+ V+ +EKV
Sbjct: 128 NSLRRIIEKYTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEAAIRSRIDNVIIKEKV 187
Query: 189 PYVPEGLEAIIFTADGDMRQALNNLQATYSGF-------RFVNQENVFKVCDQPHPLHVK 241
P+ L A++ + GDMR++LN LQA + ++ E ++ PHP ++
Sbjct: 188 NITPDALNALLQLSQGDMRRSLNVLQACKAACGDDDDNSETIDVEMIYNCVGAPHPQDIE 247
Query: 242 NMVRNVLEGKFDDACSGL-KQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
++ ++L+ + A L K D G + D+IT I+ +Y++ ++E++K
Sbjct: 248 TVLDSILKQDWTTAYMTLNKYKIDKGLALIDLITGFIDILNDYKVKPKTRIEYLKGLSEV 307
Query: 301 HMRICDGVGSYLQLCGLLA 319
I G +Q ++
Sbjct: 308 EYGISKGGNDRIQSSAIIG 326
>gi|350412747|ref|XP_003489747.1| PREDICTED: replication factor C subunit 5-like [Bombus impatiens]
Length = 329
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 113/321 (35%), Positives = 184/321 (57%), Gaps = 3/321 (0%)
Query: 8 SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
+ ++PWVEKYRP K+ D++ + + + + + +P+L+ GPPGTGKT++ILA A
Sbjct: 6 TQTTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDENQLPHLLFYGPPGTGKTSTILACA 65
Query: 68 HELLGP-NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG 126
+L P + V+E+NASDDRGI +VR +I FA G K+++LDEAD+MT
Sbjct: 66 RKLYTPAQFNSMVLEMNASDDRGIGIVRGQILSFASTGTMYRSG-FKLIILDEADAMTKD 124
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQ ALRR +E Y+++ RF + CN S+II +QSRC RF LS ++IL RL +++EE
Sbjct: 125 AQNALRRIIEKYTDNVRFCIICNYLSQIIPALQSRCTKFRFGPLSTDQILPRLDTIIKEE 184
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
+ +G +A+I + GDMR+ LN LQ+T F V +ENV+ P P+ +KN++
Sbjct: 185 NLNVSEDGKQALITLSGGDMRKVLNVLQSTSLAFSAVTEENVYSCVGHPLPIDIKNIINW 244
Query: 247 VLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
+L ++ ++ + G + DI+T L + E + + ++ + + R+
Sbjct: 245 LLNESYELCYCKIQDIKLKKGLALQDILTELHLFVNKIEFPDSILIDLVIKLAEIEKRVS 304
Query: 306 DGVGSYLQLCGLLAKLSIVRE 326
G +QL L++ R+
Sbjct: 305 IGCSEAVQLNALVSAFQRARD 325
>gi|332215081|ref|XP_003256668.1| PREDICTED: replication factor C subunit 4 isoform 1 [Nomascus
leucogenys]
Length = 363
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 125/329 (37%), Positives = 185/329 (56%), Gaps = 13/329 (3%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS + A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 27 GSSGENRKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 86
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP +R V+ELNASD+RGI VVR K+K FAQ V+ PP
Sbjct: 87 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--F 144
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD
Sbjct: 145 KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD 204
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFK 230
+ RL+ + ++E V EG+ ++ ++GD+R+A+ LQ+ +G + + ++ +
Sbjct: 205 KIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITD 264
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLK 290
+ + + G FD + +K L D G++ T ++ L ++ +++ K
Sbjct: 265 IAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQK 324
Query: 291 LEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
++ + DG +LQL L A
Sbjct: 325 SIITEKLAEVDKCLADGADEHLQLISLCA 353
>gi|308160432|gb|EFO62923.1| Replication factor C, subunit 4 [Giardia lamblia P15]
Length = 322
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 126/321 (39%), Positives = 184/321 (57%), Gaps = 21/321 (6%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+P++E+YRP + ++GN + +ARL A GN+PN++L G PG GKTT L LA+++LG
Sbjct: 4 LPFIERYRPRSLDGLIGNPEILARLRYFAAQGNLPNILLTGGPGLGKTTIALCLANQMLG 63
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+ A +ELNASD+R + +R K+K FAQK+VTLP G K+V LDE D+MT AQQ LR
Sbjct: 64 AHRSVAFLELNASDERNVSDIRAKVKTFAQKQVTLPTGIQKLVFLDECDAMTEAAQQVLR 123
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R M+ + STRF LACN SK+IEP+QSRC ++R + E++ L + ++E V
Sbjct: 124 RIMDDETGSTRFCLACNNISKVIEPVQSRCCVLRIMPPTQAELVKYLQEICEKEGVKNDT 183
Query: 193 EGLEAIIFTADGDMRQALNNLQ---------ATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
E L+ +I + D+R LN+LQ T +G + KV DQ
Sbjct: 184 EALKELISISGNDVRSCLNSLQLVADANDKVITVAGVQKALSTIDVKVIDQ--------- 234
Query: 244 VRNVL-EGKFDDACSGLKQLYDLGYSPTDIITTLFR--IIKNYEMAEHLKLEFMKEAGFA 300
V N+L GKFDD + + + GY+ DI +FR + E+ + ++ ++
Sbjct: 235 VMNLLTSGKFDDGWTLIDNQLNEGYNYDDIYNAMFRYALSSETEINDVVRASMLRILASL 294
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
H + V S LQLC LLA+L
Sbjct: 295 HAKSKTTVSSPLQLCRLLAEL 315
>gi|242019775|ref|XP_002430334.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212515458|gb|EEB17596.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 340
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 117/287 (40%), Positives = 169/287 (58%), Gaps = 3/287 (1%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
MA++ ++PWVEKYRP K+ D++ V + + +P+L+ GPPGTGKT
Sbjct: 1 MAAAIEEQPKLNMPWVEKYRPQKLDDLISQDYIVNTIRKLISHKQLPHLLFYGPPGTGKT 60
Query: 61 TSILALAHELLGP-NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDE 119
T+ILA A L P + V+ELNASDDRGI VR I FA K T+ G K+++LDE
Sbjct: 61 TTILACAKVLYTPAQFASMVLELNASDDRGIGTVRGAILDFASTK-TMFQGGVKLIILDE 119
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
AD+MT AQ ALRR ME Y+ + RF + CN KII IQSRC RF+ L +EIL RL
Sbjct: 120 ADAMTHDAQNALRRIMEKYTANVRFCIICNYLGKIIPAIQSRCTKFRFAPLDSKEILPRL 179
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH 239
V+++EK+ +G +A++ GDMR+ LN LQ+T+ F VN+ENV+ P
Sbjct: 180 EYVIEQEKIKISDDGKQAVLTLGQGDMRKVLNILQSTFVSFSEVNEENVYTCVGHPLQCD 239
Query: 240 VKNMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEM 285
+ M++++L D+ ++ + L G + +DI+T L + E+
Sbjct: 240 IFEMLQSLLNDNLSDSYKKIQTIKTLKGLALSDIVTELHTWVHKLEL 286
>gi|194222681|ref|XP_001498117.2| PREDICTED: replication factor C subunit 4 [Equus caballus]
Length = 364
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 128/330 (38%), Positives = 187/330 (56%), Gaps = 14/330 (4%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS + A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 27 GSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 86
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP +R V+ELNASD+RGI VVR K+K FAQ V+ PP
Sbjct: 87 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--F 144
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD
Sbjct: 145 KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSD 204
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFK 230
+ RL+ + +E V EG+ ++ ++GD+R+A+ LQ+ +G + V ++ +
Sbjct: 205 KIQQQRLLDIAGKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKVITD 264
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHL 289
+ + ++ G FD + +K L D G++ T ++ L I++N +++
Sbjct: 265 IAGVIPAETIDGLLAACQSGSFDKLEAAVKNLIDEGHAATQLVNQLHDVIVENDNLSDKQ 324
Query: 290 KLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
K ++ + DG +LQL L A
Sbjct: 325 KSIITEKLAEVDKCLADGADEHLQLMSLCA 354
>gi|195118794|ref|XP_002003921.1| GI18168 [Drosophila mojavensis]
gi|193914496|gb|EDW13363.1| GI18168 [Drosophila mojavensis]
Length = 332
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 120/326 (36%), Positives = 189/326 (57%), Gaps = 4/326 (1%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
S ++ + +PWVEKYRP + D++ + + ++ + +P+L+ GPPGTGKT++I
Sbjct: 2 SGNNGTVARMPWVEKYRPNCLDDLISHEEIISTINRFINQKQLPHLLFYGPPGTGKTSTI 61
Query: 64 LALAHELLGP-NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
LA A +L P +++ V+ELNASDDRGI +VR +I FA + T+ G K+++LDEAD+
Sbjct: 62 LACARQLYSPAHFKSMVLELNASDDRGIGIVRGQILNFASTR-TIFCGTFKLIILDEADA 120
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT AQ ALRR +E Y+ + RF + CN SKII +QSRC RF+ LS E+++ RL V
Sbjct: 121 MTNDAQNALRRIIEKYTENVRFCIICNYLSKIIPALQSRCTRFRFAPLSPEQMMPRLNKV 180
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
V+EE V +G +A++ A GDMR+ LN LQ+T F VN++NV+ P ++N
Sbjct: 181 VEEENVNITDDGKKALLTLAKGDMRKVLNVLQSTSMAFDVVNEDNVYMCVGYPLRSEIEN 240
Query: 243 MVRNVLE-GKFDDACSGLKQLYD-LGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
+++ +L FD A +++ G + DI+T L I E+ + + + +
Sbjct: 241 VLQTLLSAATFDSAFDTIEEAKSKRGLALEDIVTELHLFIMRLELPMSVMNKLIIKLAEI 300
Query: 301 HMRICDGVGSYLQLCGLLAKLSIVRE 326
R+ G Q L++ I R+
Sbjct: 301 EERLTKGCSETAQTAALVSAFFISRD 326
>gi|6324039|ref|NP_014109.1| replication factor C subunit 3 [Saccharomyces cerevisiae S288c]
gi|585844|sp|P38629.1|RFC3_YEAST RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3; AltName: Full=Activator 1 40 kDa subunit
gi|439118|gb|AAA34969.1| replication factor C [Saccharomyces cerevisiae]
gi|841466|gb|AAC49062.1| Rfc3p [Saccharomyces cerevisiae]
gi|1050872|gb|AAC49110.1| replication factor C, 40 kDa subunit [Saccharomyces cerevisiae]
gi|1302375|emb|CAA96207.1| RFC3 [Saccharomyces cerevisiae]
gi|285814375|tpg|DAA10269.1| TPA: replication factor C subunit 3 [Saccharomyces cerevisiae
S288c]
gi|392297062|gb|EIW08163.1| Rfc3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 340
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 193/339 (56%), Gaps = 10/339 (2%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
M++S+ S ++PWVEKYRP + ++ G + + + +G +P+L+ GPPGTGKT
Sbjct: 1 MSTSTEKRSKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKT 60
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
++I+ALA E+ G NY V+ELNASDDRGIDVVRN+IK FA + G K+++LDEA
Sbjct: 61 STIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG-FKLIILDEA 119
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D+MT AQ ALRR +E Y+ +TRF + N + K+ + SRC RF L E I R+
Sbjct: 120 DAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIA 179
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQEN-----VFKVCDQP 235
V+ EK+ P +A+I ++GDMR+ LN LQ+ + +++ +++ C P
Sbjct: 180 NVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAP 239
Query: 236 HPLHVKNMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMA-EHLKLEF 293
P +K +++++LE + A L ++ G + D+I + +I+++YE+ E ++
Sbjct: 240 RPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHL 299
Query: 294 MKEAGFAHMRICDGVGSYLQLCGLLA--KLSIVRETAKA 330
+ + I G +Q ++ K S ET KA
Sbjct: 300 LTKLADIEYSISKGGNDQIQGSAVIGAIKASFENETVKA 338
>gi|340720472|ref|XP_003398661.1| PREDICTED: replication factor C subunit 5-like isoform 1 [Bombus
terrestris]
gi|340720474|ref|XP_003398662.1| PREDICTED: replication factor C subunit 5-like isoform 2 [Bombus
terrestris]
Length = 329
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 113/321 (35%), Positives = 184/321 (57%), Gaps = 3/321 (0%)
Query: 8 SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
+ ++PWVEKYRP K+ D++ + + + + + +P+L+ GPPGTGKT++ILA A
Sbjct: 6 TQTTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDENQLPHLLFYGPPGTGKTSTILACA 65
Query: 68 HELLGP-NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG 126
+L P + V+E+NASDDRGI +VR +I FA G K+++LDEAD+MT
Sbjct: 66 RKLYTPAQFNSMVLEMNASDDRGIGIVRGQILSFASTGTMYRSG-FKLIILDEADAMTKD 124
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQ ALRR +E Y+++ RF + CN S+II +QSRC RF LS ++IL RL +++EE
Sbjct: 125 AQNALRRIIEKYTDNVRFCIICNYLSQIIPALQSRCTKFRFGPLSTDQILPRLDAIIKEE 184
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
+ +G +A+I + GDMR+ LN LQ+T F V +ENV+ P P+ +KN++
Sbjct: 185 NLNVSEDGKQALITLSGGDMRKVLNVLQSTSLAFSAVTEENVYSCVGHPLPIDIKNIINW 244
Query: 247 VLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
+L ++ ++ + G + DI+T L + E + + ++ + + R+
Sbjct: 245 LLNESYELCYCKIQDIKLKKGLALQDILTELHLFVNKIEFPDSVLIDLVIKLAEIEKRVS 304
Query: 306 DGVGSYLQLCGLLAKLSIVRE 326
G +QL L++ R+
Sbjct: 305 IGCSEAVQLNALVSAFQRARD 325
>gi|395839806|ref|XP_003792767.1| PREDICTED: replication factor C subunit 4 [Otolemur garnettii]
Length = 365
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 126/330 (38%), Positives = 187/330 (56%), Gaps = 14/330 (4%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS + A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 28 GSSGENKKAKPVPWVEKYRPKSVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 87
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP +R V+ELNASD+RGI V+R K+K FAQ V+ PP
Sbjct: 88 TILAAARELFGPELFRLRVLELNASDERGIQVIREKVKNFAQLTVSGSRSDGKLCPP--F 145
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD
Sbjct: 146 KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD 205
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFK 230
+ RL+ + ++E V EG+ ++ ++GD+R+A+ LQ+ +G + + +E +
Sbjct: 206 KIQQQRLLNITEKENVKISSEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEEVITD 265
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHL 289
+ + + G FD + +K L G++ T ++ L +++N +++
Sbjct: 266 IAGVIPSETIDGVFAACQSGSFDKLETVVKDLIIEGHAATQLVNQLHDVVVENDTLSDKQ 325
Query: 290 KLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
K ++ A + DG +LQL L A
Sbjct: 326 KSIITEKLAEADKCLADGADEHLQLISLCA 355
>gi|349580660|dbj|GAA25819.1| K7_Rfc3p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 340
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 192/339 (56%), Gaps = 10/339 (2%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
M+ S+ S ++PWVEKYRP + ++ G + + + +G +P+L+ GPPGTGKT
Sbjct: 1 MSKSTEKRSKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKT 60
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
++I+ALA E+ G NY V+ELNASDDRGIDVVRN+IK FA + G K+++LDEA
Sbjct: 61 STIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG-FKLIILDEA 119
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D+MT AQ ALRR +E Y+ +TRF + N + K+ + SRC RF L E I R+
Sbjct: 120 DAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIA 179
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQEN-----VFKVCDQP 235
V+ EK+ P +A+I ++GDMR+ LN LQ+ + +++ +++ C P
Sbjct: 180 NVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAP 239
Query: 236 HPLHVKNMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMA-EHLKLEF 293
P +K +++++LE + A L ++ G + D+I + +I+++YE+ E ++
Sbjct: 240 RPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHL 299
Query: 294 MKEAGFAHMRICDGVGSYLQLCGLLA--KLSIVRETAKA 330
+ + I G +Q ++ K S ET KA
Sbjct: 300 LTKLADIEYSISKGGNDQIQGSAVIGAIKASFENETVKA 338
>gi|325186526|emb|CCA21065.1| replication factor C subunit 5 putative [Albugo laibachii Nc14]
Length = 354
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 119/323 (36%), Positives = 178/323 (55%), Gaps = 2/323 (0%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
SS + PWVEKYRP+++ DI+ + V+ + + +P+L+ GPPGTGKT+ I
Sbjct: 23 SSYARDTSSWPWVEKYRPSRMDDIIAHKGIVSTINQLVEKQKLPHLLFYGPPGTGKTSMI 82
Query: 64 LALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM 123
+A+A ++ G ++ V+ELNASDDRGIDVVRN+IK FA K G K+++LDEADSM
Sbjct: 83 IAIARKIYGKHFSSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSSGA-KLIILDEADSM 141
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T AQ +LRR +E Y+ TRF L CN SKII +QSRC RF+ L ++ R+ +
Sbjct: 142 TNDAQFSLRRVIEKYTKHTRFCLICNYVSKIIPALQSRCMRFRFAPLGVTQVGDRVKQIR 201
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
EK+ G +A++ GDMR+ LN LQA + VN+ENV+ P P + +
Sbjct: 202 DLEKIDLTDGGFDALMQLGKGDMRRILNILQAASLAYATVNEENVYLCTGNPVPEDIAAI 261
Query: 244 VRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHM 302
++ F +A S + + GY+ TDI+ ++ ++ + E
Sbjct: 262 CHSLWNDSFAEAVSKCQAIQMTKGYATTDIMKEVYHNTTEVDLPAKCQHFIYDELAKLEH 321
Query: 303 RICDGVGSYLQLCGLLAKLSIVR 325
R+ G LQL L++ + R
Sbjct: 322 RLATGASEKLQLISLVSIYFMAR 344
>gi|390346340|ref|XP_003726529.1| PREDICTED: replication factor C subunit 5-like [Strongylocentrotus
purpuratus]
Length = 342
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 177/311 (56%), Gaps = 3/311 (0%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
S ++ ++PWVEKYRP + D++ + + + + + +P+L+ GPPGTGKT++IL
Sbjct: 2 SRANEHKNLPWVEKYRPNSLDDLISHTEIINTIQKFIKQDRLPHLLFYGPPGTGKTSTIL 61
Query: 65 ALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM 123
A+A +L P + V+ELNASDDRGI +VR I FA + G K+V+LDEAD+M
Sbjct: 62 AVAKQLYAPKEFNSMVLELNASDDRGIGIVRGSILNFASTRTIFKSG-FKLVILDEADAM 120
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T AQ ALRR +E ++ +TRF CN SKII +QSRC RF L +++I+ RL VV
Sbjct: 121 TNDAQNALRRVIEKFTENTRFCFICNYLSKIIPALQSRCTRFRFGPLDNQQIVPRLEFVV 180
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
+EE V +G +A+I A GDMR+ +N LQ+T V +ENV+ P ++N+
Sbjct: 181 REENVDMTEDGKKALITLAKGDMRRVINILQSTSMAHEKVTEENVYLCTGHPLRTDIENI 240
Query: 244 VRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHM 302
V +L F A + + QL L G + DI+ + + E + +++ + +
Sbjct: 241 VNWMLNEDFTAAFNHINQLKTLKGLALLDILLEVHTYVHRIEFPQKVRIYLLDKMSDIEY 300
Query: 303 RICDGVGSYLQ 313
R+ G LQ
Sbjct: 301 RLAAGTSEKLQ 311
>gi|332818666|ref|XP_003310208.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pan
troglodytes]
gi|332818668|ref|XP_003310209.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pan
troglodytes]
gi|410223264|gb|JAA08851.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
gi|410291994|gb|JAA24597.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
gi|410332695|gb|JAA35294.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
Length = 363
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 124/329 (37%), Positives = 185/329 (56%), Gaps = 13/329 (3%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS + A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 27 GSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 86
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP +R V+ELNASD+RGI VVR K+K FAQ V+ PP
Sbjct: 87 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--F 144
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD
Sbjct: 145 KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD 204
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFK 230
+ RL+ + ++E V EG+ ++ ++GD+R+A+ LQ+ +G + + ++ +
Sbjct: 205 KIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITD 264
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLK 290
+ + + G FD + +K L D G++ T ++ + ++ +++ K
Sbjct: 265 IAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQVHDVVVENNLSDKQK 324
Query: 291 LEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
++ + DG +LQL L A
Sbjct: 325 SIITEKLAEVDKCLADGADEHLQLISLCA 353
>gi|151944257|gb|EDN62536.1| replication factor C subunit 3 [Saccharomyces cerevisiae YJM789]
gi|190409258|gb|EDV12523.1| replication factor C subunit 3 [Saccharomyces cerevisiae RM11-1a]
gi|256271294|gb|EEU06366.1| Rfc3p [Saccharomyces cerevisiae JAY291]
gi|259149079|emb|CAY82321.1| Rfc3p [Saccharomyces cerevisiae EC1118]
gi|323331837|gb|EGA73249.1| Rfc3p [Saccharomyces cerevisiae AWRI796]
gi|323335982|gb|EGA77259.1| Rfc3p [Saccharomyces cerevisiae Vin13]
gi|323346957|gb|EGA81235.1| Rfc3p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352828|gb|EGA85130.1| Rfc3p [Saccharomyces cerevisiae VL3]
gi|365763611|gb|EHN05138.1| Rfc3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 340
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 193/339 (56%), Gaps = 10/339 (2%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
M++S+ S ++PWVEKYRP + ++ G + + + +G +P+L+ GPPGTGKT
Sbjct: 1 MSTSTEKRSKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKT 60
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
++I+ALA E+ G NY V+ELNASDDRGIDVVRN+IK FA + G K+++LDEA
Sbjct: 61 STIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG-FKLIILDEA 119
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D+MT AQ ALRR +E Y+ +TRF + N + K+ + SRC RF L E I R+
Sbjct: 120 DAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIA 179
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQEN-----VFKVCDQP 235
V+ EK+ P +A+I ++GDMR+ LN LQ+ + +++ +++ C P
Sbjct: 180 NVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAP 239
Query: 236 HPLHVKNMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMA-EHLKLEF 293
P +K +++++LE + A L ++ G + D+I + +I+++YE+ E ++
Sbjct: 240 RPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHL 299
Query: 294 MKEAGFAHMRICDGVGSYLQLCGLLA--KLSIVRETAKA 330
+ + I G +Q ++ K S ET K+
Sbjct: 300 LTKLADIEYSISKGGNDQIQGSAVIGAIKASFENETVKS 338
>gi|311977779|ref|YP_003986899.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|82050826|sp|Q5UQ47.1|RFCS1_MIMIV RecName: Full=Putative replication factor C small subunit R395;
Short=RFC small subunit R395; AltName: Full=Clamp loader
small subunit R395
gi|55417014|gb|AAV50664.1| unknown [Acanthamoeba polyphaga mimivirus]
gi|308204801|gb|ADO18602.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|339061329|gb|AEJ34633.1| hypothetical protein MIMI_R395 [Acanthamoeba polyphaga mimivirus]
Length = 319
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 179/309 (57%), Gaps = 2/309 (0%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
IPW+EKYRP + D++ + + ++ I +D +LI+ G PG GKT+++ +A ELLG
Sbjct: 5 IPWIEKYRPVNIDDVIIDDNISKQINIFLQDRENVHLIITGSPGVGKTSTVRCIAKELLG 64
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+ + +E+NA++DRG+ + I F +K K K+++LDEAD MT+ Q +
Sbjct: 65 EDMSQGYLEINAAEDRGVRSISTIIPPFCKK--VFAANKSKIILLDEADIMTSKCQYDIN 122
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
++ + T+F CN SSKIIE IQS C I+RF +L+DE+I L + EK+PY
Sbjct: 123 NMIKKFGRKTKFIFTCNDSSKIIEDIQSICRILRFKKLTDEQINQYLSKICVNEKIPYDE 182
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GL I + ++GDMR+++N+LQ T F + + V K+C P P ++ ++ LE
Sbjct: 183 QGLRTICYISNGDMRKSINDLQKTAFTFEKITKNLVLKICKVPDPEDIRKIISLCLESNL 242
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
+ A + + L Y DI+T+ ++K Y+M+E+L+L + + I G+ S L
Sbjct: 243 EKADEIMNNIIKLDYCYFDIVTSFIYVLKVYDMSENLRLRLIMIVNETKINISKGLRSKL 302
Query: 313 QLCGLLAKL 321
QL G++ +L
Sbjct: 303 QLTGMICRL 311
>gi|125982841|ref|XP_001355186.1| GA20846 [Drosophila pseudoobscura pseudoobscura]
gi|54643499|gb|EAL32243.1| GA20846 [Drosophila pseudoobscura pseudoobscura]
Length = 354
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 128/322 (39%), Positives = 186/322 (57%), Gaps = 26/322 (8%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP+ V D+V + VA L ++PN++L GPPGTGKT++ILA A ++ G
Sbjct: 32 PWVEKYRPSSVDDVVEQSEVVAVLRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFGD 91
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKHKVVVLDEADSMTA 125
Y++ ++ELNASD+RGI+VVR KIK F+Q + +PP K+++LDEADSMT
Sbjct: 92 MYKDRILELNASDERGINVVRTKIKNFSQLSASHVRPDGRPVPP--FKIIILDEADSMTH 149
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME S+STRF L CN S+II PI SRC+ RF L +E+I++RL + +
Sbjct: 150 AAQSALRRTMEKESSSTRFCLICNYVSRIIVPITSRCSKFRFKPLGEEKIIARLQHICEL 209
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E V P+ + I+ + GD+R+A+ LQ S FR E+ D + ++
Sbjct: 210 ESVKIDPDAYKTIVKISGGDLRRAITTLQ---SCFRLQGSEHTINTADL---FEMSGVIP 263
Query: 246 NVLEGKFDDAC-SG----LKQLY-DLGYSPTDIITTLFR----IIKNYEMAEHLKLEFMK 295
+ L F D C SG L+Q D+GYS + + + I+ + + + K + +
Sbjct: 264 DYLLDDFMDVCRSGNYERLEQFVRDIGYSAYSVGQMMEQLVEFIVHHPNLTDPQKAKICE 323
Query: 296 EAGFAHMRICDGVGSYLQLCGL 317
+ G R+ DG YLQ+ L
Sbjct: 324 KLGECCYRLQDGGSEYLQIMDL 345
>gi|71986063|ref|NP_498750.2| Protein F44B9.8 [Caenorhabditis elegans]
gi|55584161|sp|P34429.3|RFC5_CAEEL RecName: Full=Probable replication factor C subunit 5; AltName:
Full=Activator 1 subunit 5
gi|351021183|emb|CCD63451.1| Protein F44B9.8 [Caenorhabditis elegans]
Length = 368
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 116/322 (36%), Positives = 186/322 (57%), Gaps = 16/322 (4%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
++++A ++PWVEKYRP+K+ ++V + V L + +P+L+ GPPGTGKTT++LA
Sbjct: 22 TTTTASNLPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLA 81
Query: 66 LAHELLGPNYREA-VMELNASDDRGIDVVRNKIKMFAQKKV-----------TLPPGKHK 113
A ++ P + V+ELNASD+RGIDVVRN I FAQ K T+P K
Sbjct: 82 AARQMYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVP---FK 138
Query: 114 VVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDE 173
+V+LDEAD+MT AQ ALRR +E Y+++ RF + CN + I+ IQSRC RF+ L +
Sbjct: 139 LVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQK 198
Query: 174 EILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCD 233
I+ RL +V+ E++ P+G +A++ + GDMR +N LQ+T F V++ V++
Sbjct: 199 LIVPRLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQCIG 258
Query: 234 QPHPLHVKNMVRNVLEGKFDDACSGLK-QLYDLGYSPTDIITTLFRIIKNYEMAEHLKLE 292
QP P +K +V+ +L + ++ +L++ GY+ D+IT L + ++ +
Sbjct: 259 QPTPKEMKEVVKTLLNDPSKKCMNTIQTKLFENGYALQDVITHLHDFVFTLDIPDEAMSA 318
Query: 293 FMKEAGFAHMRICDGVGSYLQL 314
+ G + G + QL
Sbjct: 319 IITGLGEVEENLSTGCSNETQL 340
>gi|389745640|gb|EIM86821.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 358
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 110/308 (35%), Positives = 174/308 (56%), Gaps = 2/308 (0%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + D+V + D + + +P+L+ GPPGTGKT++ILA+A + G
Sbjct: 37 LPWVEKYRPNSLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYG 96
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
Y++ +ELNASDDRGIDVVR +IK FA+ + G +K+++LDEAD MT AQ ALR
Sbjct: 97 AGYKKQTLELNASDDRGIDVVREQIKQFAETRTLFSKG-YKLIILDEADMMTTAAQAALR 155
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R +E Y+ + RF + CN +KI+ IQSRC RFS L +E+ R+ VV E V
Sbjct: 156 RVIEQYTKNVRFCIICNYVNKIVPAIQSRCTRFRFSPLPMKEVEKRVDHVVAAEGVKLTE 215
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+G +A++ + GDMR+ALN LQA ++ + + V+ P P ++ +V +++ +F
Sbjct: 216 DGKKALLKLSKGDMRRALNILQACHAAYDQTGETEVYNCTGSPEPADIETVVNSMITDEF 275
Query: 253 DDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
+ + L + G + D++ + I+ + ++ + R+ G
Sbjct: 276 TTSYHMISTLKTERGLALQDLLIGAYEYIEGIDFPPAARVYLLDHLATTEHRLSTGGSEK 335
Query: 312 LQLCGLLA 319
+QL LL
Sbjct: 336 IQLTALLG 343
>gi|356515902|ref|XP_003526636.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
Length = 361
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 185/317 (58%), Gaps = 5/317 (1%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
IPWVEKYRP + D+ + D V + + + +P+L+L GPPGTGKT++ILA+A +L G
Sbjct: 38 IPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYG 97
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH---KVVVLDEADSMTAGAQQ 129
Y+ ++ELNASDDRGIDVVR +I+ FA + +L G K+V+LDEAD+MT AQ
Sbjct: 98 SQYQNMILELNASDDRGIDVVRQQIQDFASTQ-SLSFGVKSSVKLVLLDEADAMTKDAQF 156
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRR +E Y+ STRFAL CN +KII +QSRC RF+ L + RL V++ E +
Sbjct: 157 ALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLD 216
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
GL A + ++GDMR+ALN LQ+T+ + + +E V+ P P ++ + +L
Sbjct: 217 VEDSGLAAFVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIELISYWLLN 276
Query: 250 GKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGV 308
+F D+ + ++ G + DI+ + + +M ++++ M + R+ G
Sbjct: 277 EQFADSFKRIDEMKTRKGLALIDIVREVTMFVFKIKMPSAVRVQLMNDLADIEYRLSFGC 336
Query: 309 GSYLQLCGLLAKLSIVR 325
LQL ++A + R
Sbjct: 337 NDKLQLGSVIASFTRAR 353
>gi|170087828|ref|XP_001875137.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650337|gb|EDR14578.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 334
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 110/312 (35%), Positives = 177/312 (56%), Gaps = 2/312 (0%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY 75
VEKYRP + D+V + D + +P+L+ GPPGTGKT++ILA+A + G Y
Sbjct: 18 VEKYRPVTLDDVVSHKDITNTIERFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGAQY 77
Query: 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTM 135
R+ ++ELNASD+RGIDVVR ++K FA+ + G K+++LDEAD MT AQ ALRR +
Sbjct: 78 RKQILELNASDERGIDVVREQVKQFAETRTLFAKG-FKLIILDEADMMTQQAQAALRRVI 136
Query: 136 EIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGL 195
E Y+ + RF + CN +KI IQSRC RFS L E+ R+ VV+ E+V +G
Sbjct: 137 EQYTKNVRFCIICNYVNKITPAIQSRCTRFRFSPLPAIEVEKRVKTVVEAEQVSLTDDGK 196
Query: 196 EAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDA 255
+A++ + GDMR+ALN LQA ++ + + + ++ PHP ++ +V ++L +F +
Sbjct: 197 KALLKLSRGDMRRALNVLQACHAAYDTIGETEIYNCTGNPHPSDIEAIVNSMLADEFTAS 256
Query: 256 CSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQL 314
++ + G + D++T + ++ ++ H ++ + R+ G +QL
Sbjct: 257 YQMTSKMKTERGLALQDLLTGAYEYLETIDIKPHARIYLLDHLATTEHRLSTGGSEKMQL 316
Query: 315 CGLLAKLSIVRE 326
LL I E
Sbjct: 317 TALLGAFKIAIE 328
>gi|242024266|ref|XP_002432549.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212518009|gb|EEB19811.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 360
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 121/322 (37%), Positives = 183/322 (56%), Gaps = 13/322 (4%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
+IPWVEKYRP V DIV ++ V+ L + ++PNL+ GPPGTGKT++ILA A +L
Sbjct: 34 NIPWVEKYRPKTVDDIVEQVEVVSVLRQTLKGADLPNLLFYGPPGTGKTSTILAAARQLF 93
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQ--KKVTLPPGK----HKVVVLDEADSMTA 125
G ++E ++ELNASDDRGI V+R+K+K FAQ T P G+ K+V+LDEADSMT+
Sbjct: 94 GDMFKERILELNASDDRGIQVIRDKVKTFAQLSASSTRPDGQPCPPFKIVLLDEADSMTS 153
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME+Y+ +TRF L CN S+II PI SRC+ RF L + +I RL + +
Sbjct: 154 AAQAALRRTMELYTKTTRFCLVCNYVSRIIPPITSRCSKFRFKPLGENKIFERLSKISKA 213
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQAT---YSGFRFVNQENVFKVCDQPHPLHVKN 242
EKV + L ++ GD+R+A+ +LQ+ + E+V +V +
Sbjct: 214 EKVNINDDTLMTLVKCTGGDLRRAITSLQSCARIKEEGELITIEDVNEVAGVIPDSVITE 273
Query: 243 MVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFMKEAGFAH 301
++ + + + ++ YS ++ L II+++++++ K +
Sbjct: 274 LINTCNKNNYTTIEDFVNEVTYQAYSVAQLMEQLTEYIIQDFKLSDKAKATIFDKLSLCS 333
Query: 302 MRICDGVGSYL---QLCGLLAK 320
R+ DG YL LC +AK
Sbjct: 334 SRLIDGASEYLLLIDLCCTIAK 355
>gi|307170254|gb|EFN62614.1| Replication factor C subunit 5 [Camponotus floridanus]
Length = 329
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 113/326 (34%), Positives = 188/326 (57%), Gaps = 3/326 (0%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
SS+++ ++PWVEKYRP + +++ + + + + +P+L+L GPPGTGKT++
Sbjct: 2 SSTTAEQRANLPWVEKYRPKSLDELISHETIIRTINKFIDENQLPHLLLYGPPGTGKTST 61
Query: 63 ILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
ILA A +L P + V+ELNASDDRGI +VR +I FA T+ K+++LDEAD
Sbjct: 62 ILACARKLYTPTQFNSMVLELNASDDRGIGIVRGQILSFASTG-TMYKSAFKLIILDEAD 120
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
+MT AQ ALRR +E Y+++ RF + CN SKII +QSRC RF L+ E+I+ RL
Sbjct: 121 AMTIDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIIPRLNY 180
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
V++ E + +G EA++ + GDMR+ L+ LQ+T+ + VNQENV+ P P +
Sbjct: 181 VIEAENLKVTEDGKEALMTLSGGDMRKVLSVLQSTWFAYGIVNQENVYNCVGHPLPSDIH 240
Query: 242 NMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
++ +L +D +++L + G + DI+T + + + + ++ + +
Sbjct: 241 TIINWLLNESYDTCYKKIQELKLNKGLALQDILTEIHLCVIKIDFPNSVFIDLLCKMAEI 300
Query: 301 HMRICDGVGSYLQLCGLLAKLSIVRE 326
R+ G +Q+ L++ VR+
Sbjct: 301 EKRLASGCRDIIQINSLISAFYKVRD 326
>gi|327276150|ref|XP_003222833.1| PREDICTED: replication factor C subunit 5-like [Anolis
carolinensis]
Length = 342
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/321 (36%), Positives = 183/321 (57%), Gaps = 3/321 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D++ + D ++ + + +P+L+ GPPGTGKT++ILA A +L
Sbjct: 21 NLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACAKQLY 80
Query: 72 -GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGI +VR I FA + G K+V+LDEAD+MT AQ A
Sbjct: 81 KDKEFNSMVLELNASDDRGIGIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQEAQNA 139
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL V++ EKV
Sbjct: 140 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLKHVIESEKVDV 199
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G++A++ ++GDMR++LN LQ+T F V +E V+ QP + N++ +L
Sbjct: 200 SDDGMKALVTLSNGDMRRSLNILQSTNMAFGKVTEETVYTCTGQPLKSDIANILDWMLNQ 259
Query: 251 KFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
F A + +L L G + DI+T + + + ++++ + + R+ G
Sbjct: 260 DFTAAYHNIMELKTLKGLALHDILTEIHLFVHRVDFPPSVRIQLLIKMADIEHRLAAGTS 319
Query: 310 SYLQLCGLLAKLSIVRETAKA 330
+QL L+ + R+ A
Sbjct: 320 EKIQLGALVGAFQVTRDLIAA 340
>gi|313212534|emb|CBY36498.1| unnamed protein product [Oikopleura dioica]
gi|313219619|emb|CBY30541.1| unnamed protein product [Oikopleura dioica]
Length = 329
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 121/323 (37%), Positives = 190/323 (58%), Gaps = 3/323 (0%)
Query: 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
S +PWVEKYRP K+ D++ + + ++ + + +P+L+ GPPGTGKT++ILA+
Sbjct: 2 SGKQIGLPWVEKYRPNKLDDLISHTEIISTIKKFIDNEQLPHLLFYGPPGTGKTSTILAV 61
Query: 67 AHELLGP-NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
A EL G N ++ V+ELNASD RGI+VVRN+I FA + +L KV++LDE D+MT
Sbjct: 62 AKELYGAKNLKKMVLELNASDARGINVVRNEILNFASSR-SLHCKGFKVIILDECDAMTR 120
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRR ME ++ + RF L CN K+I IQSRC RF+ LS E+++ R+ VV+E
Sbjct: 121 DAQAALRRVMEKFTKNVRFCLICNYLGKLIPAIQSRCTRFRFAPLSVEQMMPRINHVVEE 180
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E + G++ ++ A+GDMR++LN LQA++ F V + V+KV +P ++ M+
Sbjct: 181 EGIDIDQNGMDLLLKMAEGDMRRSLNILQASHLAFNKVTDDIVYKVTGRPRRNDIRRMME 240
Query: 246 NVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRI 304
+L +++L + G + D++T L+ I ++ + K E + R+
Sbjct: 241 WLLNQDIKYCMDSIEELMLENGIALNDVLTDLYEEICEADLPDIPKAEILSALADIEYRL 300
Query: 305 CDGVGSYLQLCGLLAKLSIVRET 327
G +QL ++A S VR T
Sbjct: 301 NIGATEKIQLAVIVAAFSKVRNT 323
>gi|341892966|gb|EGT48901.1| hypothetical protein CAEBREN_08790 [Caenorhabditis brenneri]
Length = 349
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/322 (37%), Positives = 180/322 (55%), Gaps = 15/322 (4%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
S+ + A ++PWVEKYRP+K ++V + V L + +P+L+ GPPGTGKTT++L
Sbjct: 3 STRTVASNLPWVEKYRPSKFDELVAHEQVVKTLTRFIENRTLPHLLFYGPPGTGKTTTVL 62
Query: 65 ALAHELLGP-NYREAVMELNASDDRGIDVVRNKIKMFAQKK----------VTLPPGKHK 113
A A ++ P V+ELNASD+RGIDVVRN I FAQ K LP K
Sbjct: 63 AAARKMYSPAKMASMVLELNASDERGIDVVRNTIVTFAQTKGLQSFASASSEQLP---FK 119
Query: 114 VVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDE 173
+V+LDEAD+MT AQ ALRR +E Y+++ RF + CN + II IQSRC RF+ L +
Sbjct: 120 LVILDEADAMTRDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAPLDQQ 179
Query: 174 EILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCD 233
I+ RL +V E V P+G +A++ + GDMR +N LQ+T F V++ V++
Sbjct: 180 LIVPRLQHIVDSESVKMTPDGQKALLTVSKGDMRTVINTLQSTAMSFDTVSESTVYQCIG 239
Query: 234 QPHPLHVKNMVRNVLEGKFDDACSGLK-QLYDLGYSPTDIITTLFRIIKNYEMAEHLKLE 292
QP P +K +V +L + +K +L+ GY+ D+IT L I+ ++ +
Sbjct: 240 QPTPNEMKEVVTCLLNKPSKECMETIKSRLFMNGYALQDVITHLHDIVFTMDIPDEAMTS 299
Query: 293 FMKEAGFAHMRICDGVGSYLQL 314
+ G + G + LQL
Sbjct: 300 IICGLGEVEENLASGCSNELQL 321
>gi|388583685|gb|EIM23986.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 335
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 118/324 (36%), Positives = 186/324 (57%), Gaps = 4/324 (1%)
Query: 8 SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
S D+PWVEKYRP ++ D+V + + + + + +P+L+ GPPGTGKT++ILA+A
Sbjct: 9 SHKSDLPWVEKYRPNELDDVVSHTEIIQTINQFIQKQRLPHLLFYGPPGTGKTSTILAIA 68
Query: 68 HELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGA 127
++ G N++ V+ELNASDDRGIDVVR++IK FAQ + G K+++LDEAD MT A
Sbjct: 69 KKIYGGNWKRNVLELNASDDRGIDVVRDQIKSFAQTRTLFSDG-FKLIILDEADLMTQQA 127
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
Q ALRR +E Y+ +TRF + CN +KI I SRC RFS L + RL+ V++ E
Sbjct: 128 QGALRRIIEHYTPTTRFCIICNYVNKITPAIMSRCTRFRFSPLPYAHLDKRLVEVIENEA 187
Query: 188 VPYVPEGLEAIIFTADGDMRQALNNLQATYSGF--RFVNQENVFKVCDQPHPLHVKNMVR 245
V + +A++ GDMR+ALN LQA ++ ++ ++V+ V P P ++ +V
Sbjct: 188 VQIDDDAKKALLNLTKGDMRRALNILQACHTACMPERISIKDVYNVTAAPQPEAIEYIVN 247
Query: 246 NVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRI 304
+L+ + S + Q+ G + DI+T ++ I+ E K+ ++ R+
Sbjct: 248 TLLKDEISTCYSKIHQVKRQNGLALQDILTGVYDYIQTIEFPTATKVAILELLAEVEHRL 307
Query: 305 CDGVGSYLQLCGLLAKLSIVRETA 328
G +QL L+A + + A
Sbjct: 308 SKGSSETIQLSALIASFKLSLDIA 331
>gi|323303302|gb|EGA57098.1| Rfc3p [Saccharomyces cerevisiae FostersB]
Length = 340
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 192/338 (56%), Gaps = 10/338 (2%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
M++S+ S ++PWVEKYRP + ++ G + + + +G +P+L+ GPPGTGKT
Sbjct: 1 MSTSTEKRSKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKT 60
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
++I+ALA E+ G NY V+ELNASDDRGIDVVRN+IK FA + G K+++LDEA
Sbjct: 61 STIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG-FKLIILDEA 119
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D+MT AQ ALRR +E Y+ +TRF + N + K+ + SRC RF L E I R+
Sbjct: 120 DAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIA 179
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQEN-----VFKVCDQP 235
V+ EK+ P +A+I ++GDMR+ LN LQ+ + +++ +++ C P
Sbjct: 180 NVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAP 239
Query: 236 HPLHVKNMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMA-EHLKLEF 293
P +K +++++LE + A L ++ G + D+I + +I+++YE+ E ++
Sbjct: 240 RPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHL 299
Query: 294 MKEAGFAHMRICDGVGSYLQLCGLLA--KLSIVRETAK 329
+ + I G +Q ++ K S ET K
Sbjct: 300 LTKLADIEYSISKGGNDQIQGSAVIGAIKASFENETVK 337
>gi|255558610|ref|XP_002520330.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223540549|gb|EEF42116.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 342
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 175/311 (56%), Gaps = 10/311 (3%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP +V D+ + V L N P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 74 N-YREAVMELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGKHKVVVLDEADSMTA 125
Y+ V+ELNASDDRGI+VVR KIK FA Q+ P +K+++LDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSGQRAGGYPCPPYKIIILDEADSMTE 129
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS+E + SR++ + +E
Sbjct: 130 DAQNALRRTMETYSKVTRFFFLCNYISRIIEPLASRCAKFRFKPLSEEIMSSRVLHICRE 189
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMV 244
E + E L + + + GD+R+A+ LQ + ++ +++ V V +
Sbjct: 190 EGLNLDAEALSTLSYVSQGDLRRAITYLQGAARLYGSTISSKDLISVSGVIPQEAVGALY 249
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFMKEAGFAHMR 303
G FD A + + GY + ++ L +++ ++++ K + K G A
Sbjct: 250 AACRSGDFDMANKEVNNIIAEGYPVSQMLVQLLEVVVEADDISDEQKAQICKSLGAADKC 309
Query: 304 ICDGVGSYLQL 314
+ DG YLQL
Sbjct: 310 LVDGADEYLQL 320
>gi|50513623|pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 193/339 (56%), Gaps = 10/339 (2%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
M++S+ S ++PWVEKYRP + ++ G + + + +G +P+L+ GPPGTGKT
Sbjct: 1 MSTSTEKRSKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKT 60
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
++I+ALA E+ G NY V+ELNASDDRGIDVVRN+IK FA + G K+++LDEA
Sbjct: 61 STIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG-FKLIILDEA 119
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D+MT AQ ALRR +E Y+ +TRF + N + K+ + S+C RF L E I R+
Sbjct: 120 DAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIA 179
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQEN-----VFKVCDQP 235
V+ EK+ P +A+I ++GDMR+ LN LQ+ + +++ +++ C P
Sbjct: 180 NVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAP 239
Query: 236 HPLHVKNMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMA-EHLKLEF 293
P +K +++++LE + A L ++ G + D+I + +I+++YE+ E ++
Sbjct: 240 RPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHL 299
Query: 294 MKEAGFAHMRICDGVGSYLQLCGLLA--KLSIVRETAKA 330
+ + I G +Q ++ K S ET KA
Sbjct: 300 LTKLADIEYSISKGGNDQIQGSAVIGAIKASFENETVKA 338
>gi|256053212|ref|XP_002570095.1| replication factor C / DNA polymerase III gamma-tau subunit
[Schistosoma mansoni]
gi|350645477|emb|CCD59829.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Schistosoma mansoni]
Length = 362
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 131/331 (39%), Positives = 177/331 (53%), Gaps = 28/331 (8%)
Query: 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH 68
S IPWVEKYRP V ++ + V+ L ++PNL+ GPPGTGKT+ ILALA
Sbjct: 21 SQKHIPWVEKYRPKTVGEVAYQTEVVSVLQRCIEGSDLPNLLFYGPPGTGKTSLILALAR 80
Query: 69 ELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKV------------TLPPGKHKVVV 116
+L GP Y E V+ELNASD+RGI V+R K+K FA V +PP +K+++
Sbjct: 81 QLFGPLYSERVLELNASDERGISVIREKVKAFAHIAVSSSTNSSGSSSTNIPP--YKLII 138
Query: 117 LDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEIL 176
LDEADSMTA AQ ALRRTME +TRF L CN ++IIEPI SRCA RF L +E
Sbjct: 139 LDEADSMTAPAQAALRRTMETEMRTTRFCLTCNYVTRIIEPITSRCAKFRFRPLDNEIAR 198
Query: 177 SRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENV-------F 229
SRL + E + E L+ ++ GD+RQ + LQ + V+ +V
Sbjct: 199 SRLRHIADAENLSITNETLDHLLSLCHGDLRQGITMLQCVHQLILSVDDSDVGCRSSITS 258
Query: 230 KVCDQ-----PHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNY 283
K D+ P L +K++++ G FDD +K L GYS L II +
Sbjct: 259 KELDEAAAVVPSDL-IKSLIKTSENGSFDDLQIIIKNLLLEGYSAHQTTYQLHEYIINDE 317
Query: 284 EMAEHLKLEFMKEAGFAHMRICDGVGSYLQL 314
+++ K ++ A R+ DG YLQL
Sbjct: 318 KLSCSQKASILESIAVADSRLIDGADEYLQL 348
>gi|391342410|ref|XP_003745513.1| PREDICTED: replication factor C subunit 5-like [Metaseiulus
occidentalis]
Length = 327
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 114/324 (35%), Positives = 192/324 (59%), Gaps = 12/324 (3%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
+++PWVEKYRP + D++ + D ++ + P+L+ GPPGTGKT++ILA A +L
Sbjct: 6 HNLPWVEKYRPKTLDDLIAHEDIISTIDRFVTQDRFPHLLFYGPPGTGKTSTILATARQL 65
Query: 71 LGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
P + V+ELNASDDRGI +VR +I FA + T+ K K+++LDEAD+MT AQ
Sbjct: 66 YEPKEFSSMVLELNASDDRGIGIVRGEILNFASTR-TIFNKKFKLIILDEADAMTHDAQN 124
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRR +E Y+++ RF + CN SKII P+QSRC RF LS +++ R+ +V++ E VP
Sbjct: 125 ALRRVIEKYADNARFCIICNYLSKIIPPLQSRCTRFRFGPLSVSQMVPRIEMVIKTEDVP 184
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGF---RFVNQENVFKVCDQPHPLHVKNMVRN 246
P G +AI+ A+GDMR++LN LQA+Y F +++ V++ P + +++ +
Sbjct: 185 ITPAGKQAIVDLAEGDMRKSLNILQASYMAFCERGKIDETEVYQCVGAPQKSVIADIMTH 244
Query: 247 VLEGKFDDACSGLKQLYDL----GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHM 302
++ DD + +++ D+ + DI+ + + I +++ +K+ + + G
Sbjct: 245 LMN---DDITTAYRKILDIKTMKSLALQDIVHKVHQSIMEFDLKAKVKIFILSKLGQLEK 301
Query: 303 RICDGVGSYLQLCGLLAKLSIVRE 326
R+ G +QL L++ + R+
Sbjct: 302 RLAAGSSENIQLGSLVSIMFQARQ 325
>gi|168037225|ref|XP_001771105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677638|gb|EDQ64106.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 365
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 120/326 (36%), Positives = 181/326 (55%), Gaps = 14/326 (4%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRPT + D+ + D + + + + +P+L+L GPPGTGKT++ILA+A +L G
Sbjct: 32 PWVEKYRPTSLADVAAHKDIIDTIDRLTGENRLPHLLLYGPPGTGKTSTILAVARKLYGA 91
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQ-KKVTLPPGKH-KVVVLDEADSMTAGAQQAL 131
Y+ ++ELNASDDRGI+VVR +I+ FA K ++ P + K+V+LDEAD+MT AQ AL
Sbjct: 92 QYQNMILELNASDDRGIEVVRQQIQDFASTKSISFGPKVNVKLVILDEADAMTKDAQFAL 151
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR +E Y+ STRF L CN +SKII +QSRC RF+ L + RL V+Q+E +
Sbjct: 152 RRVIEKYTKSTRFCLICNYASKIIPALQSRCTRFRFAPLDPANVTERLRYVIQQEGLDVT 211
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
GL AI+ A+GD+R+ALN LQ+ + +E V+ P P ++ + +L
Sbjct: 212 DGGLAAIVRLANGDLRKALNILQSAQMASPHLTEEAVYLCTGNPMPKDIEQIAYWLLNEP 271
Query: 252 FDDACSG-----LKQLYDL-------GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGF 299
F + +K +D+ G + D+ L + M ++++ +
Sbjct: 272 FSTSFQSILNNLIKLFHDITKMKTSKGLALVDVARELQPFVFTINMPPTVRVQLIDALAD 331
Query: 300 AHMRICDGVGSYLQLCGLLAKLSIVR 325
R+ G LQL LL + R
Sbjct: 332 VEYRLAFGTNEKLQLGALLGAFTRAR 357
>gi|18395021|ref|NP_564148.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|15810343|gb|AAL07059.1| putative replication factor [Arabidopsis thaliana]
gi|17065122|gb|AAL32715.1| Similar replication factor C, 37-kDa subunit [Arabidopsis thaliana]
gi|21536935|gb|AAM61276.1| putative replication factor [Arabidopsis thaliana]
gi|34098857|gb|AAQ56811.1| At1g21690 [Arabidopsis thaliana]
gi|332192018|gb|AEE30139.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 339
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 126/313 (40%), Positives = 175/313 (55%), Gaps = 13/313 (4%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP +V D+ + V L + + P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 74 N-YREAVMELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGKHKVVVLDEADSMTA 125
Y+ V+ELNASDDRGI+VVR KIK FA ++ P K+++LDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS+E + +R++ + E
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMV 244
E + E L + + GD+R+A+ LQ+ F + ++ V PL V N +
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVV-PLEVVNKL 248
Query: 245 RNVLE-GKFDDACSGLKQLYDLGYSPTDIITTLFRII--KNYEMAEHLKLEFMKEAGFAH 301
+ G FD A + + GY + II LF I+ + ++ + K + K
Sbjct: 249 FTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETD 308
Query: 302 MRICDGVGSYLQL 314
R+ DG YLQL
Sbjct: 309 KRLVDGADEYLQL 321
>gi|195163892|ref|XP_002022783.1| GL14564 [Drosophila persimilis]
gi|194104806|gb|EDW26849.1| GL14564 [Drosophila persimilis]
Length = 354
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 128/322 (39%), Positives = 185/322 (57%), Gaps = 26/322 (8%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP V D+V + VA L ++PN++L GPPGTGKT++ILA A ++ G
Sbjct: 32 PWVEKYRPRSVDDVVEQSEVVAVLRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFGD 91
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKHKVVVLDEADSMTA 125
Y++ ++ELNASD+RGI+VVR KIK F+Q + +PP K+++LDEADSMT
Sbjct: 92 MYKDRILELNASDERGINVVRTKIKNFSQLSASHVRPDGRPVPP--FKIIILDEADSMTH 149
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME S+STRF L CN S+II PI SRC+ RF L +E+I++RL + +
Sbjct: 150 AAQSALRRTMEKESSSTRFCLICNYVSRIIVPITSRCSKFRFKPLGEEKIIARLQHICEL 209
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E V P+ + I+ + GD+R+A+ LQ S FR E+ D + ++
Sbjct: 210 ESVKIDPDAYKTIVKISGGDLRRAITTLQ---SCFRLQGSEHTINTADL---FEMSGVIP 263
Query: 246 NVLEGKFDDAC-SG----LKQLY-DLGYSPTDIITTLFR----IIKNYEMAEHLKLEFMK 295
+ L F D C SG L+Q D+GYS + + + I+ + + + K + +
Sbjct: 264 DYLLDDFMDVCRSGNYERLEQFVRDIGYSAYSVGQMMEQLVEFIVHHPNLTDPQKAKICE 323
Query: 296 EAGFAHMRICDGVGSYLQLCGL 317
+ G R+ DG YLQ+ L
Sbjct: 324 KLGECCYRLQDGGSEYLQIMDL 345
>gi|351737548|gb|AEQ60583.1| replication factor C small subunit [Acanthamoeba castellanii
mamavirus]
gi|398257227|gb|EJN40835.1| hypothetical protein lvs_R331 [Acanthamoeba polyphaga
lentillevirus]
Length = 319
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 179/309 (57%), Gaps = 2/309 (0%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
IPW+EKYRP + D++ + + ++ I +D +LI+ G PG GKT+++ +A ELLG
Sbjct: 5 IPWIEKYRPVNIDDVIIDDNISKQINIFLQDRENVHLIITGSPGVGKTSTVRCIAKELLG 64
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+ + +E+NA++DRG+ + I F +K K K+++LDEAD MT+ Q +
Sbjct: 65 EDMSQGYLEINAAEDRGVRSISTIIPPFCKK--VFAANKSKIILLDEADIMTSKCQYDIN 122
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
++ + T+F CN SSKIIE IQS C I+RF +L+DE+I L + EK+PY
Sbjct: 123 NMIKKFGRKTKFIFTCNDSSKIIEDIQSICRILRFKKLTDEQINQYLSKICVNEKIPYDE 182
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GL I + ++GDMR+++N+LQ T F + + V K+C P P ++ ++ LE
Sbjct: 183 QGLRTICYISNGDMRKSINDLQKTAFTFGKITKNLVLKICKVPDPEDIRKIISLCLESNL 242
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
+ A + + L Y DI+T+ ++K Y+M+E+L+L + + I G+ S L
Sbjct: 243 EKADEIMNNIIKLDYCYFDIVTSFIYVLKVYDMSENLRLRLIMIVNETKINISKGLRSKL 302
Query: 313 QLCGLLAKL 321
QL G++ +L
Sbjct: 303 QLTGMICRL 311
>gi|61367093|gb|AAX42951.1| replication factor C 4 [synthetic construct]
Length = 364
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 124/329 (37%), Positives = 184/329 (55%), Gaps = 13/329 (3%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS + A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 27 GSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 86
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP +R V+ELNASD+RGI VVR K+K FAQ V+ PP
Sbjct: 87 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--F 144
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ F LSD
Sbjct: 145 KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFSFKPLSD 204
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFK 230
+ RL+ + ++E V EG+ ++ ++GD+R+A+ LQ+ +G + + ++ +
Sbjct: 205 KIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITD 264
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLK 290
+ + + G FD + +K L D G++ T ++ L ++ +++ K
Sbjct: 265 IAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQK 324
Query: 291 LEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
++ + DG +LQL L A
Sbjct: 325 SIITEKLAEVDKCLADGADEHLQLISLCA 353
>gi|332023241|gb|EGI63497.1| Replication factor C subunit 5 [Acromyrmex echinatior]
Length = 327
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/324 (35%), Positives = 189/324 (58%), Gaps = 3/324 (0%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
+SS++ ++PWVEKYRP + +++ + + + + +P+L+L GPPGTGKT++IL
Sbjct: 2 TSSNAQVNLPWVEKYRPKSLDELISHETIIKTINKYIDENQLPHLLLYGPPGTGKTSTIL 61
Query: 65 ALAHELLGP-NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM 123
A A +L P + V+ELNASDDRGI +VR +I FA T+ K+++LDEAD+M
Sbjct: 62 ACARKLYTPAQFNSMVLELNASDDRGIGIVRGQILSFASTG-TMYKSAFKLIILDEADAM 120
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T AQ ALRR +E Y+++ RF + CN SKII +QSRC RF L+ E+I+ RL V+
Sbjct: 121 TIDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIIPRLNHVI 180
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
+ E + +G +A+I + GDMR+ ++ LQ+T+ + VN+ENV+ P P + ++
Sbjct: 181 EAENLKVTEDGKQALITLSGGDMRKVISVLQSTWFAYGAVNEENVYNCVGHPLPRDITSI 240
Query: 244 VRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHM 302
V +L +D +++L + G + DI+T + + + + L + + +
Sbjct: 241 VNWLLNESYDTCYKKIQELKLNKGLALQDILTEVHSYVIKIDFPDQLFTDLLCKMAEIEK 300
Query: 303 RICDGVGSYLQLCGLLAKLSIVRE 326
R+ G +QL L++ VR+
Sbjct: 301 RLASGCRDNIQLNSLISAFYSVRD 324
>gi|410970795|ref|XP_003991862.1| PREDICTED: replication factor C subunit 4 [Felis catus]
Length = 362
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/330 (38%), Positives = 185/330 (56%), Gaps = 14/330 (4%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS + A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 25 GSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 84
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP +R V+ELNASD+RGI VVR K+K FAQ V+ PP
Sbjct: 85 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--F 142
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD
Sbjct: 143 KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD 202
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFK 230
+ RL+ + +E V EG+ ++ ++GD+R+A+ LQ+ +G + + ++ +
Sbjct: 203 KIQQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITD 262
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHL 289
+ + + G FD +K L D G++ T ++ L +++N +++
Sbjct: 263 IAGVIPAETIDGLFAACQSGSFDKLEGVVKNLIDEGHAATQLVNQLHDVVVENDNLSDKQ 322
Query: 290 KLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
K ++ + DG +LQL L A
Sbjct: 323 KSIITEKLAEVDKCLADGADEHLQLISLCA 352
>gi|448302355|ref|ZP_21492337.1| Replication factor C small subunit [Natronorubrum tibetense GA33]
gi|445581584|gb|ELY35936.1| Replication factor C small subunit [Natronorubrum tibetense GA33]
Length = 1029
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/275 (40%), Positives = 170/275 (61%), Gaps = 3/275 (1%)
Query: 54 PPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHK 113
P TT+ A+A E+ ++RE +ELNASD RGIDVVR++IK FA+ + H+
Sbjct: 757 PTVMHNTTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFARS--SFGGYNHR 814
Query: 114 VVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDE 173
++ LDEAD++T+ AQ ALRRTME +SN+TRF L+CN SS+II+PIQSRCA+ RF+ LS++
Sbjct: 815 IIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELSEK 874
Query: 174 EILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCD 233
I +++ + E + +G++A+++ ADGDMR+A+N LQA V++E VF +
Sbjct: 875 AIEAQVREIAANEGIEVTDDGVDALVYAADGDMRKAINGLQAAAVMGETVDEETVFAITS 934
Query: 234 QPHPLHVKNMVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLE 292
P V+ MV + ++G F A + L+ L D G + D+I L R +++ E +
Sbjct: 935 TARPEEVEAMVEHAIDGDFTAARAALEDLLMDRGLAGGDVIDQLHRSAWEFDIPEQATVR 994
Query: 293 FMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRET 327
++ G RI +G LQL +LA L++ E+
Sbjct: 995 LLERLGEVDYRITEGANERLQLEAMLASLALENES 1029
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
W+EKYRP ++ +I G+ + V RL +P+L+ AGP GTGK
Sbjct: 19 WIEKYRPERLDEIKGHENIVPRLQNYVEQDELPHLMFAGPAGTGK 63
>gi|297845144|ref|XP_002890453.1| EMB1968 [Arabidopsis lyrata subsp. lyrata]
gi|297336295|gb|EFH66712.1| EMB1968 [Arabidopsis lyrata subsp. lyrata]
Length = 339
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/313 (40%), Positives = 175/313 (55%), Gaps = 13/313 (4%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP +V D+ + V L + + P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 74 N-YREAVMELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGKHKVVVLDEADSMTA 125
Y+ V+ELNASDDRGI+VVR KIK FA ++ P K+++LDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS+E + +R++ + E
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMV 244
E + E L + + GD+R+A+ LQ+ F + ++ V PL V N +
Sbjct: 190 EGLSLGGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLDVSGVV-PLEVVNKL 248
Query: 245 RNVLE-GKFDDACSGLKQLYDLGYSPTDIITTLFRII--KNYEMAEHLKLEFMKEAGFAH 301
+ G FD A + + GY + II LF I+ + ++ + K + K
Sbjct: 249 FTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETD 308
Query: 302 MRICDGVGSYLQL 314
R+ DG YLQL
Sbjct: 309 KRLVDGADEYLQL 321
>gi|340501071|gb|EGR27891.1| replication factor C, activator 1, putative [Ichthyophthirius
multifiliis]
Length = 357
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 171/293 (58%), Gaps = 25/293 (8%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP K+ ++ + V L + + GN+P++I GPPGTGKT+SILA A +L G
Sbjct: 11 MPWVEKYRPNKIDEVSYQEEVVKSLEGVLQTGNLPHIIFHGPPGTGKTSSILAFAKQLYG 70
Query: 73 PN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK-------------------- 111
PN YR+ ++ELNASDDRGI VVR KIK FAQ+ V P K
Sbjct: 71 PNFYRDRILELNASDDRGIQVVREKIKKFAQQVVVKNPDKQFFFYQNQKSYQLFQIRNYK 130
Query: 112 ---HKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFS 168
+K+++LDEADSMT AQ ALRR +E S++TRF + CN +KIIEP+ SRC RF
Sbjct: 131 CPNYKIIILDEADSMTTEAQSALRRIIEDNSSTTRFCIICNYITKIIEPLASRCVKFRFK 190
Query: 169 RLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQEN 227
+ +E L +L + +E + Y + LE +I ++GD+R+++N +Q+ + F + +N +
Sbjct: 191 PIVEEAQLCKLKEICDKEYIQYEDQALEKLIHISNGDLRKSVNLIQSASTLFNKSINLQT 250
Query: 228 VFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRII 280
V ++ HV N+ +L+ ++ ++Q G+S +I II
Sbjct: 251 VLEISGSIPDEHVINLYEVLLQKNLNELRKSVQQFIYQGFSADQLINQFSDII 303
>gi|431838862|gb|ELK00791.1| Replication factor C subunit 4 [Pteropus alecto]
Length = 394
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 127/330 (38%), Positives = 186/330 (56%), Gaps = 14/330 (4%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS + A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 57 GSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 116
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP +R V+ELNASD+RGI VVR K+K FAQ V+ PP
Sbjct: 117 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--F 174
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD
Sbjct: 175 KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD 234
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFK 230
+ RL+ + +E V EG+ ++ ++GD+R+A+ LQ+ +G + + ++ +
Sbjct: 235 KIQQQRLLDIAGKEHVKISNEGVSYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITD 294
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHL 289
+ + + G FD + +K L D G++ T ++ L I++N +++
Sbjct: 295 IAGVIPAETIDGIFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVIVENDNLSDKQ 354
Query: 290 KLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
K ++ + DG +LQL L A
Sbjct: 355 KSIITEKLAEVDKCLADGADEHLQLISLCA 384
>gi|328774020|gb|EGF84057.1| hypothetical protein BATDEDRAFT_84775 [Batrachochytrium
dendrobatidis JAM81]
Length = 358
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/320 (34%), Positives = 184/320 (57%), Gaps = 2/320 (0%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP+++ +++ + D ++ + + +P+++ GPPGTGKT++ILA A +L G
Sbjct: 36 LPWVEKYRPSRLDELISHKDIISTIVRFIDENKLPHMLFYGPPGTGKTSTILACARKLYG 95
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+R ++ELNASDDRGIDVVR +IK FA + G K+++LDEAD+MT AQ ALR
Sbjct: 96 DKFRSMILELNASDDRGIDVVREQIKNFASTRKLFSSG-FKLIILDEADAMTQAAQNALR 154
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R +E Y+ + RF L CN KII +QSRC RF+ L + +I R+ ++ +E +
Sbjct: 155 RVIEQYTKNVRFCLICNYVGKIIPALQSRCTRFRFAPLEEAQISDRITHIINQEGINITQ 214
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
G +A++ + GDMR+ALN LQA ++G+ +E ++ P P + +V + +
Sbjct: 215 AGRQAVLKLSQGDMRRALNILQAVHTGYPEATEETIYACTGSPCPADIDQIVAWLFNMDY 274
Query: 253 DDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A +K L ++ G + D+++ L + E+ + ++ M++ I G
Sbjct: 275 TTALKSVKLLKHEKGLALADLLSGLVVSLAGLELPKVSRIFLMEKLADIEYNIGVGCSED 334
Query: 312 LQLCGLLAKLSIVRETAKAV 331
+QL ++ + + A+ V
Sbjct: 335 IQLGAMVGAFRLSVDMAENV 354
>gi|226479998|emb|CAX73295.1| hypothetical protein [Schistosoma japonicum]
Length = 364
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 129/337 (38%), Positives = 174/337 (51%), Gaps = 28/337 (8%)
Query: 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
+ S IPWVEKYRP + ++ + V+ L ++PNL+ GPPGTGKT+ ILAL
Sbjct: 19 TRSQKHIPWVEKYRPKTIDEVAYQTEVVSVLRRCIGGSDLPNLLFYGPPGTGKTSLILAL 78
Query: 67 AHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKV---------------TLPPGK 111
A +L GP Y E V+ELNASD+RGI V+R K+K FA V +PP
Sbjct: 79 ARQLFGPLYSERVLELNASDERGIVVIREKVKAFAHVAVSSSGSNTNSSGSSSTNIPP-- 136
Query: 112 HKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLS 171
+K+++LDEADSMTA AQ ALRRTME +TRF L CN ++IIEPI SRCA RF L
Sbjct: 137 YKLIILDEADSMTAPAQAALRRTMETEMRTTRFCLTCNYVTRIIEPITSRCAKFRFRPLD 196
Query: 172 DEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKV 231
+E +RL + E + E L+ ++ GD+RQ + LQ + V+ N +
Sbjct: 197 NEIARARLRYIADAENLSVTDETLDHLLSLCRGDLRQGITMLQCVHQLIMSVDDSNSNSL 256
Query: 232 CDQPHPLH----------VKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIK 281
L +K++V+ G FDD +K L GYS I L I
Sbjct: 257 SITSSELDEAAAVVPTDVIKSLVKTSENGNFDDLQVIIKNLLLEGYSAHQTIYQLHECII 316
Query: 282 NYEMAEHL-KLEFMKEAGFAHMRICDGVGSYLQLCGL 317
N E + K ++ A R+ DG YLQL +
Sbjct: 317 NDETLSCIQKASILESLALADSRLIDGADEYLQLLAI 353
>gi|29841325|gb|AAP06357.1| similar to GenBank Accession Number BC003335 activator 1; 37 kDa
subunit; replication factor C subunit)(RFC37)in Mus
musculus [Schistosoma japonicum]
Length = 364
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 129/337 (38%), Positives = 174/337 (51%), Gaps = 28/337 (8%)
Query: 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
+ S IPWVEKYRP + ++ + V+ L ++PNL+ GPPGTGKT+ ILAL
Sbjct: 19 TRSQKHIPWVEKYRPKTIDEVAYQTEVVSVLRRCIGGSDLPNLLFYGPPGTGKTSLILAL 78
Query: 67 AHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKV---------------TLPPGK 111
A +L GP Y E V+ELNASD+RGI V+R K+K FA V +PP
Sbjct: 79 ARQLFGPLYSERVLELNASDERGIVVIREKVKAFAHVAVSSSGSNTNSSGSSSTNIPP-- 136
Query: 112 HKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLS 171
+K+++LDEADSMTA AQ ALRRTME +TRF L CN ++IIEPI SRCA RF L
Sbjct: 137 YKLIILDEADSMTAPAQAALRRTMETEMRTTRFCLTCNYVTRIIEPITSRCAKFRFRPLD 196
Query: 172 DEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKV 231
+E +RL + E + E L+ ++ GD+RQ + LQ + V+ N +
Sbjct: 197 NEIARARLRYIADAENLSVTDETLDHLLSLCRGDLRQGITMLQCVHQLIMSVDDSNSNSL 256
Query: 232 CDQPHPLH----------VKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIK 281
L +K++V+ G FDD +K L GYS I L I
Sbjct: 257 SITSSELDEAAAVVPTDVIKSLVKTSENGNFDDLQVIIKNLLLEGYSAHQTIYQLHEYII 316
Query: 282 NYEMAEHL-KLEFMKEAGFAHMRICDGVGSYLQLCGL 317
N E + K ++ A R+ DG YLQL +
Sbjct: 317 NDETLSCIQKASILESLALADSRLIDGADEYLQLLAI 353
>gi|62858553|ref|NP_001016363.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
gi|89266993|emb|CAJ81288.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
gi|134026004|gb|AAI35433.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
Length = 360
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 187/329 (56%), Gaps = 12/329 (3%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
S+ S +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 26 GSTGESKKQKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 85
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKV--TLPPGK----HKV 114
+ILA + EL GP +R+ V+ELNASD+RGI VVR K+K FAQ V T GK K+
Sbjct: 86 TILAASRELYGPELFRQRVLELNASDERGIQVVREKVKNFAQLTVGGTRSDGKPCPPFKI 145
Query: 115 VVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEE 174
V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF L+D+
Sbjct: 146 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLADKI 205
Query: 175 ILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFKVC 232
RL+ + ++E V E + ++ ++GD+R+A+ LQ+ +G + + +E V ++
Sbjct: 206 QTQRLLSICEKENVKITNEAISCLVEVSEGDLRKAITFLQSATRLTGGKEITEEIVTEIA 265
Query: 233 DQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLE 292
+ ++ G F+ + +K L + G++ T ++ L +I +
Sbjct: 266 GVVPKETLDCVLVACQSGSFEKLETVVKNLINNGHAATQLVNQLHDVILERGDLTDKQKA 325
Query: 293 FMKEAGFAHMRIC--DGVGSYLQLCGLLA 319
F+ E A + C DG YLQ+ GL A
Sbjct: 326 FITEK-LAEVDKCLADGADEYLQMLGLFA 353
>gi|448330403|ref|ZP_21519685.1| Replication factor C small subunit [Natrinema versiforme JCM 10478]
gi|445611784|gb|ELY65530.1| Replication factor C small subunit [Natrinema versiforme JCM 10478]
Length = 1030
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 108/265 (40%), Positives = 168/265 (63%), Gaps = 3/265 (1%)
Query: 60 TTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDE 119
TT+ A+A E+ ++RE +ELNASD RGIDVVR++IK FA + + H+++ LDE
Sbjct: 764 TTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYDHRIIFLDE 821
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
AD++T+ AQ ALRRTME +SN+TRF L+CN SS+II+PIQSRCA+ RF+ L+D+ I +++
Sbjct: 822 ADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDDAIEAQV 881
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH 239
+ ++ + +G++A+I+ ADGDMR+A+N LQA V++E VF + P
Sbjct: 882 REIAADQDIAVTDDGVDALIYAADGDMRKAINALQAAAVMGETVDEETVFAITATARPEE 941
Query: 240 VKNMVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAG 298
V+ MV + +EG F A + L+ L + G + D+I L R +++ E + ++ G
Sbjct: 942 VEAMVDHAIEGDFTAARAALEDLLTERGLAGGDVIDQLHRSAWEFDIPEQATVRLLERLG 1001
Query: 299 FAHMRICDGVGSYLQLCGLLAKLSI 323
RI +G LQL +LA L++
Sbjct: 1002 EVDFRITEGANERLQLEAMLASLAL 1026
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
W+EKYRP ++ +I G+ D V RL ++P+L+ AGP GTGK
Sbjct: 19 WIEKYRPERLDEIKGHEDIVPRLQRYVEQDDLPHLMFAGPAGTGK 63
>gi|365758856|gb|EHN00681.1| Rfc3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 340
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 193/339 (56%), Gaps = 10/339 (2%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
M++ + + ++PWVEKYRP + ++ G + ++ + G +P+L+ GPPGTGKT
Sbjct: 1 MSAGADKKNKENLPWVEKYRPETLDEVYGQNEVISTVRKFVDQGKLPHLLFYGPPGTGKT 60
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
++I+ALA E+ G NY V+ELNASDDRGIDVVRN+IK FA + G K+++LDEA
Sbjct: 61 STIVALAREIYGRNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG-FKLIILDEA 119
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D+MT AQ ALRR +E Y+ +TRF + N + K+ + SRC RF L E I R+
Sbjct: 120 DAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIA 179
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS-----GFRFVNQENVFKVCDQP 235
V+ EK+ PE +A+I ++GDMR+ LN LQ+ + G ++ + +++ C P
Sbjct: 180 NVLVREKLKLSPEAEKALIELSNGDMRRVLNVLQSCKATLDNPGEDEISDDVIYECCGAP 239
Query: 236 HPLHVKNMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMA-EHLKLEF 293
P +K +++++LE + A L ++ G + D+I + +I++ Y++ E +++
Sbjct: 240 RPSDLKTVLKSMLEDDWGTAHYTLNKIRSAKGLALIDLIEGIVKILEKYDLQNEETRVQL 299
Query: 294 MKEAGFAHMRICDGVGSYLQLCGLLA--KLSIVRETAKA 330
+ I G +Q ++ K S ETA+
Sbjct: 300 LTRLADIEYSISKGGNDQIQGSAVIGAIKTSFENETART 338
>gi|157786766|ref|NP_001099339.1| replication factor C subunit 4 [Rattus norvegicus]
gi|149019930|gb|EDL78078.1| replication factor C (activator 1) 4 (predicted), isoform CRA_a
[Rattus norvegicus]
gi|195540022|gb|AAI68166.1| Rfc4 protein [Rattus norvegicus]
Length = 364
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 125/319 (39%), Positives = 185/319 (57%), Gaps = 14/319 (4%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT++ILA A EL G
Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFG 97
Query: 73 PN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKHKVVVLDEADSM 123
P +R V+ELNASD+RGI VVR K+K FAQ V+ PP K+V+LDEADSM
Sbjct: 98 PELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FKIVILDEADSM 155
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD+ RL+ +
Sbjct: 156 TSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQKRLLDIA 215
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFKVCDQPHPLHVK 241
++E V E + ++ ++GD+R+A+ LQ+ +G + ++++ + + ++
Sbjct: 216 EKENVKIGDEEIAYLVRISEGDLRKAITFLQSATRLTGGKEISEDVITDIAGVIPAATIE 275
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLF-RIIKNYEMAEHLKLEFMKEAGFA 300
+V G FD + LK L D G++ T ++ L II++ +++ K ++
Sbjct: 276 GIVTACHSGSFDKLEAVLKNLIDEGHAATQLVNQLHDSIIEDENLSDKQKSIITEKLAEV 335
Query: 301 HMRICDGVGSYLQLCGLLA 319
+ DG +LQL L A
Sbjct: 336 DKCLADGADEHLQLMSLCA 354
>gi|401839265|gb|EJT42559.1| RFC3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 340
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 193/339 (56%), Gaps = 10/339 (2%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
M++ + + ++PWVEKYRP + ++ G + ++ + G +P+L+ GPPGTGKT
Sbjct: 1 MSAGADKKNKENLPWVEKYRPETLDEVYGQNEVISTVRKFVDQGKLPHLLFYGPPGTGKT 60
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
++I+ALA E+ G NY V+ELNASDDRGIDVVRN+IK FA + G K+++LDEA
Sbjct: 61 STIVALAREIYGRNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG-FKLIILDEA 119
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D+MT AQ ALRR +E Y+ +TRF + N + K+ + SRC RF L E I R+
Sbjct: 120 DAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIA 179
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS-----GFRFVNQENVFKVCDQP 235
V+ EK+ PE +A+I ++GDMR+ LN LQ+ + G ++ + +++ C P
Sbjct: 180 NVLVREKLKLSPEAEKALIELSNGDMRRVLNVLQSCKATLDNPGEDEISDDVIYECCGAP 239
Query: 236 HPLHVKNMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMA-EHLKLEF 293
P +K +++++LE + A L ++ G + D+I + +I++ Y++ E +++
Sbjct: 240 RPSDLKTVLKSMLEDDWGTAHYTLNKIRSAKGLALIDLIEGIVKILEEYDLQNEETRVQL 299
Query: 294 MKEAGFAHMRICDGVGSYLQLCGLLA--KLSIVRETAKA 330
+ I G +Q ++ K S ETA+
Sbjct: 300 LTRLADIEYSISKGGNDQIQGSAVIGAIKTSFENETART 338
>gi|194306567|ref|NP_853556.2| replication factor C subunit 5 isoform 2 [Homo sapiens]
gi|193787684|dbj|BAG52890.1| unnamed protein product [Homo sapiens]
Length = 319
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 117/313 (37%), Positives = 179/313 (57%), Gaps = 3/313 (0%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL-GPN 74
VEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA A +L
Sbjct: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 61
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+ V+ELNASDDRGID++R I FA + G K+V+LDEAD+MT AQ ALRR
Sbjct: 62 FGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 120
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
+E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+EEKV +G
Sbjct: 121 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 180
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A++ + GDMR+ALN LQ+T F V +E V+ P + N++ +L F
Sbjct: 181 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 240
Query: 255 ACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + +L L G + DI+T + + + +++ + + R+ G +Q
Sbjct: 241 AYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQ 300
Query: 314 LCGLLAKLSIVRE 326
L L+A + R+
Sbjct: 301 LSSLIAAFQVTRD 313
>gi|224066809|ref|XP_002302226.1| predicted protein [Populus trichocarpa]
gi|222843952|gb|EEE81499.1| predicted protein [Populus trichocarpa]
Length = 363
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 180/315 (57%), Gaps = 3/315 (0%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + D+ + D + + + + +P+L+L GPPGTGKT++ILA+A +L G
Sbjct: 41 PWVEKYRPQSLADVAAHRDIIDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 100
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH--KVVVLDEADSMTAGAQQAL 131
Y ++ELNASDDRGIDVVR +I+ FA + K K+V+LDEAD+MT AQ AL
Sbjct: 101 QYHNMILELNASDDRGIDVVRKQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFAL 160
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR +E Y+ +TRFAL CN +KII +QSRC RF+ L + RL V++ E +
Sbjct: 161 RRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDPMHVGERLKHVIEAEGLDVP 220
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
GLEA+ ++GDMR+ALN LQ+T+ + + +E V+ P P V+ + +L
Sbjct: 221 ESGLEALKCLSNGDMRKALNILQSTHMASQQITEETVYLCTGNPLPQDVQQITHWLLNES 280
Query: 252 FDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
F ++ + ++ G + DI+ + + +M +++ + + R+ G
Sbjct: 281 FAESYKRISEIKTRKGLALVDIVREVTMFVFKIKMQSDIRVPLINDLADIEYRLSFGCND 340
Query: 311 YLQLCGLLAKLSIVR 325
LQL L+A + R
Sbjct: 341 KLQLGSLIASFTRAR 355
>gi|72072160|ref|XP_787339.1| PREDICTED: replication factor C subunit 4-like isoform 2
[Strongylocentrotus purpuratus]
gi|390359382|ref|XP_003729467.1| PREDICTED: replication factor C subunit 4-like isoform 1
[Strongylocentrotus purpuratus]
Length = 355
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 187/327 (57%), Gaps = 10/327 (3%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
+S+ S+ +PWVEKYRP V ++ + VA L + ++PN++ GPPGTGKT+
Sbjct: 17 SSTGGSTKQRQVPWVEKYRPRTVDEVAYQDEVVAVLKKSLQGADLPNMLFYGPPGTGKTS 76
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKV--TLPPGK----HKV 114
+ILA + EL G + YR V+ELNASD+RGI VVR+K+K FAQ P GK K+
Sbjct: 77 TILAASRELFGTDMYRSRVLELNASDERGIQVVRDKVKKFAQTAAGGIRPDGKPCPPFKI 136
Query: 115 VVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEE 174
++LDEADSMT AQ ALRRTME S +T+F L CN S+IIEP+ SRC+ RF LS
Sbjct: 137 IILDEADSMTYDAQAALRRTMEKQSKNTKFCLICNYISRIIEPLTSRCSKFRFKPLSKPI 196
Query: 175 ILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFR--FVNQENVFKVC 232
+L + + E + E LEAI+ ++GDMR+++ LQ+ + R + E+V+++
Sbjct: 197 QGKKLREICEAENINCGEEALEAILKLSEGDMRKSITFLQSVHRLQREDGIRVEDVYEIA 256
Query: 233 DQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKL 291
+ ++++ G ++ +++L GYS + ++ +F II + E+ + K
Sbjct: 257 GVIPDKMIDDLIQACYGGSYEKLDEKVQELLQGGYSASQVVNQIFDIIVDRGELTDKQKS 316
Query: 292 EFMKEAGFAHMRICDGVGSYLQLCGLL 318
+ R+CDG LQ+ L
Sbjct: 317 AIAERLAVIDKRLCDGADEGLQIMDLF 343
>gi|126338206|ref|XP_001370165.1| PREDICTED: replication factor C subunit 4 [Monodelphis domestica]
Length = 366
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 126/330 (38%), Positives = 189/330 (57%), Gaps = 14/330 (4%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS+ S A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 28 GSSAESRRAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 87
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP +R+ V+ELNASD+RGI V+R K+K FAQ V+ PP
Sbjct: 88 TILAAARELYGPELFRQRVLELNASDERGIQVIREKVKTFAQLTVSGSRSDGKPCPP--F 145
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD
Sbjct: 146 KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD 205
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFK 230
+ RL+ + ++E V EG+ ++ ++GD+R+A+ LQ+ +G + V ++ + +
Sbjct: 206 KIQHQRLLDISEKENVKINNEGIAYLVKVSEGDLRKAITFLQSATRLTGGQEVTEKVITE 265
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHL 289
+ + + G F+ + +K L D G++ T +I L +++ ++ +
Sbjct: 266 IAGVVPTGTITGIFYACQSGSFEKLEALVKDLIDEGHAATQLINQLHDVVVEKDDLTDKQ 325
Query: 290 KLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
K ++ + DG +LQL L A
Sbjct: 326 KSIITEKLAEVDKCLADGADEHLQLISLCA 355
>gi|57109940|ref|XP_535837.1| PREDICTED: replication factor C subunit 4 [Canis lupus familiaris]
Length = 363
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 125/330 (37%), Positives = 186/330 (56%), Gaps = 14/330 (4%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS + +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 26 GSSGENKKTKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 85
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP +R V+ELNASD+RGI VVR K+K FAQ V+ PP
Sbjct: 86 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--F 143
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD
Sbjct: 144 KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD 203
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFK 230
+ RL+ + +E V EG+ ++ ++GD+R+A+ LQ+ +G + + ++ +
Sbjct: 204 KIQQQRLLDIADKEHVKVSNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITD 263
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHL 289
+ + + G FD + +K L D G++ T +++ +++N +++
Sbjct: 264 IAGVIPAGTIDGIFAACQSGSFDKLEAVVKDLIDEGHAATQLVSQFHDVVVENDNLSDKQ 323
Query: 290 KLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
K ++ A + DG +LQL L A
Sbjct: 324 KSIITEKLAEADKCLADGADEHLQLISLCA 353
>gi|365982341|ref|XP_003668004.1| hypothetical protein NDAI_0A06060 [Naumovozyma dairenensis CBS 421]
gi|343766770|emb|CCD22761.1| hypothetical protein NDAI_0A06060 [Naumovozyma dairenensis CBS 421]
Length = 338
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 112/317 (35%), Positives = 182/317 (57%), Gaps = 8/317 (2%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D+ G + V + +G +P+L+ GPPGTGKT++I+ALA E+
Sbjct: 13 NLPWVEKYRPESLDDVYGQTEVVTTVRKFLEEGKLPHLLFYGPPGTGKTSTIVALAREIF 72
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G NY V+ELNASDDRGI+VVRN+IK FA + G K+++LDEAD+MT AQ AL
Sbjct: 73 GKNYSNMVLELNASDDRGIEVVRNQIKDFASTRQIFSKG-FKLIILDEADAMTNAAQNAL 131
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR +E Y+ +TRF + N S K+ + SRC RF L + I R+ V+ E +
Sbjct: 132 RRIIEKYTKNTRFCILANYSHKLTPALLSRCTRFRFQPLPRDAIEKRISNVLIHENIKIS 191
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGF-----RFVNQENVFKVCDQPHPLHVKNMVRN 246
+ +A+I + GDMR+ LN LQA+ + ++ + +++ C P P +K ++++
Sbjct: 192 DDAKDALITLSQGDMRRVLNVLQASKATLDDPANEEIHADVIYECCGAPRPADLKTILKS 251
Query: 247 VLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHL-KLEFMKEAGFAHMRI 304
+LE + A L +L G + D+I + +++++YE+ L ++ + + G I
Sbjct: 252 ILEDDWSSAYYTLTKLRSTKGLALIDLIEGIIKLLEDYELKNELTRISLLSKLGDIEYSI 311
Query: 305 CDGVGSYLQLCGLLAKL 321
G +Q ++ +
Sbjct: 312 SKGGNDKIQSSAVIGAI 328
>gi|330845966|ref|XP_003294831.1| replication factor C subunit [Dictyostelium purpureum]
gi|325074630|gb|EGC28646.1| replication factor C subunit [Dictyostelium purpureum]
Length = 344
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 119/317 (37%), Positives = 182/317 (57%), Gaps = 16/317 (5%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWV KYRP + D+ D V+ L GN+P+L+ GPPGTGKT++ILA+A ++ GP
Sbjct: 12 PWVSKYRPKTMDDVSYQDDVVSALKKSLSTGNLPHLLFYGPPGTGKTSTILAIAMDIYGP 71
Query: 74 NY-REAVMELNASDDRGIDVVRNKIKMFAQKKV--TLPPGKH-----KVVVLDEADSMTA 125
++ V+ELNASD+RGI++VR KIK FA V T+ G + K+++LDEADSMT+
Sbjct: 72 ELIKQRVLELNASDERGIEIVRTKIKNFAGFTVNKTVSNGNNAGATFKLIILDEADSMTS 131
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRT+E S +TRF L CN S+II+P+ SRCA RF L E + RL + +
Sbjct: 132 DAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDSEATIERLKYISIQ 191
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRF----VNQENVFKVCDQPHPLHVK 241
E + +AI +DGDMR+A+ LQ S FRF + ++ ++ + PL +
Sbjct: 192 EGIKCTDSVYQAIQTVSDGDMRKAITYLQ---SAFRFYGNKLTEDTIYNISGTLSPLIIT 248
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFMKEAGFA 300
+++++ F D S ++ + GY + +++ LF ++ + + + K + G
Sbjct: 249 SLIKSCKSNSFKDLQSTVQSIISQGYPVSQVVSQLFDFVLSDSKFNDKQKSLISMKIGNV 308
Query: 301 HMRICDGVGSYLQLCGL 317
+ DG +LQL L
Sbjct: 309 DRNLIDGSEEFLQLLDL 325
>gi|57529590|ref|NP_001006550.1| replication factor C subunit 4 [Gallus gallus]
gi|53136906|emb|CAG32782.1| hypothetical protein RCJMB04_37a17 [Gallus gallus]
Length = 359
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 124/330 (37%), Positives = 185/330 (56%), Gaps = 14/330 (4%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS + +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 25 GSSGEGNKLKPVPWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 84
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP +R+ V+ELNASD+RGI V+R K+K FAQ + PP
Sbjct: 85 TILAAARELFGPELFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRADGKVCPP--F 142
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD
Sbjct: 143 KIVILDEADSMTSAAQGALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSD 202
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS--GFRFVNQENVFK 230
+ RL+ V ++E V E + ++ +DGD+R+A+ LQ+ G + + ++ V +
Sbjct: 203 KIQQQRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTE 262
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRI-IKNYEMAEHL 289
+ + ++ G F+ + K L + GY+ ++ L I +++ + ++
Sbjct: 263 IAGVIPRETIDGLLSACSSGSFEKLETVAKNLINEGYAVAQLVNQLHDIVVESEDFSDKQ 322
Query: 290 KLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
K +++ + DG YLQL L A
Sbjct: 323 KSIIVEKLAEVDKCLADGADEYLQLISLCA 352
>gi|351709587|gb|EHB12506.1| Replication factor C subunit 4 [Heterocephalus glaber]
Length = 364
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 126/330 (38%), Positives = 187/330 (56%), Gaps = 14/330 (4%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS + +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 27 GSSGENKKVKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 86
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP +R V+ELNASD+RGI VVR K+K FAQ V+ PP
Sbjct: 87 TILAAARELFGPELFRSRVLELNASDERGIQVVREKVKNFAQLAVSGSRSDGKPCPP--F 144
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN ++IIEP+ SRC+ RF LSD
Sbjct: 145 KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVTRIIEPLTSRCSKFRFKPLSD 204
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFK 230
+ RL+ + ++E V EG+ ++ ++GD+R+A+ LQ+ +G + V ++ +
Sbjct: 205 KIQQQRLLDIAEKENVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVMEKVITD 264
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLF-RIIKNYEMAEHL 289
+ + + G FD + +K L + G++ T +I + I++N +++
Sbjct: 265 IAGVIPAETIDGVFAACQSGSFDKLEAVVKNLINEGHAATQLINQVHDAIVENDNLSDKQ 324
Query: 290 KLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
K ++ A + DG +LQL L A
Sbjct: 325 KSIMTEKLAEADKCLADGADEHLQLISLCA 354
>gi|156084582|ref|XP_001609774.1| replication factor C3 protein [Babesia bovis T2Bo]
gi|154797026|gb|EDO06206.1| replication factor C3 protein, putative [Babesia bovis]
Length = 348
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 115/329 (34%), Positives = 177/329 (53%), Gaps = 16/329 (4%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP DI+ + D ++ L A G +P+L+ GPPGTGKT++I+A++ L G
Sbjct: 7 VPWVEKYRPESFSDIISHDDILSTLMNFAEKGQLPHLLFHGPPGTGKTSTIMAVSRYLYG 66
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG----------KHKVVVLDEADS 122
+ VMELNASD+RGI+ VR +IK FA+ T G K+++LDEAD
Sbjct: 67 SHRHSYVMELNASDERGIETVREQIKTFAETSNTFSSGIVGSDSGPRTNLKLIILDEADQ 126
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT AQ +LRR MEIYS++ RF L CN ++II PIQSRC RF L ++ + R +
Sbjct: 127 MTNAAQNSLRRIMEIYSSNVRFCLICNFMNRIIPPIQSRCTGFRFPPLKNDVVKRRTADI 186
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-----RFVNQENVFKVCDQPHP 237
+ E + L+ + GDMR+ LN LQ T + + + V P+P
Sbjct: 187 AKAEGLTVSECALDTLAEIGQGDMRRVLNCLQVTAMSIGATRDKVITSDVVISTAGLPNP 246
Query: 238 LHVKNMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKE 296
+ +++ +++ F D + L + GYS D++T L+R I + + ++ +
Sbjct: 247 TEISKLLQRLMQESFKDCVDYVVTLNQVQGYSVEDLVTALYRSILRIDWPNVVIVQLLIR 306
Query: 297 AGFAHMRICDGVGSYLQLCGLLAKLSIVR 325
G R+ G Y+Q+ L++ + VR
Sbjct: 307 LGDIEQRLSAGASPYIQIASLVSAFAEVR 335
>gi|326926086|ref|XP_003209236.1| PREDICTED: replication factor C subunit 4-like [Meleagris
gallopavo]
Length = 362
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 122/319 (38%), Positives = 182/319 (57%), Gaps = 14/319 (4%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
IPWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT++ILA A EL G
Sbjct: 36 IPWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFG 95
Query: 73 PN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKHKVVVLDEADSM 123
P +R+ V+ELNASD+RGI V+R K+K FAQ + PP K+V+LDEADSM
Sbjct: 96 PELFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRADGEVCPP--FKIVILDEADSM 153
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD+ RL+ V
Sbjct: 154 TSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVS 213
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS--GFRFVNQENVFKVCDQPHPLHVK 241
++E V E + ++ ++GD+R+A+ LQ+ G + + ++ V ++ +
Sbjct: 214 EKENVKITSEAVSYLVKVSEGDLRKAITYLQSATRLMGGKEITEKTVTEIAGVIPRETID 273
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFMKEAGFA 300
++ G F+ + K L GY+ +I+ L ++++ + ++ K +++
Sbjct: 274 GLLSACWSGSFEKLETVAKNLISEGYAVAQLISQLHDLVVESEDFSDKQKSIIVEKLAEV 333
Query: 301 HMRICDGVGSYLQLCGLLA 319
+ DG YLQL L A
Sbjct: 334 DKCLADGADEYLQLISLCA 352
>gi|195051153|ref|XP_001993043.1| GH13305 [Drosophila grimshawi]
gi|193900102|gb|EDV98968.1| GH13305 [Drosophila grimshawi]
Length = 332
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 119/326 (36%), Positives = 187/326 (57%), Gaps = 4/326 (1%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
S S+ + +PWVEKYRP + D++ + + ++ + +P+L+ GPPGTGKT++I
Sbjct: 2 SESNGTVARLPWVEKYRPNCLDDLISHEEIISTITRFINQKQLPHLLFYGPPGTGKTSTI 61
Query: 64 LALAHELLGP-NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
LA A +L +++ V+ELNASDDRGI +VR +I FA + T+ G K+++LDEAD+
Sbjct: 62 LACARQLYSSAHFKSMVLELNASDDRGIGIVRGQILNFASTR-TIFCGTFKLIILDEADA 120
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT AQ ALRR +E Y+ + RF + CN SKII +QSRC RF+ LS E++L RL +
Sbjct: 121 MTNDAQNALRRIIEKYTENVRFCIICNYLSKIIPALQSRCTRFRFAPLSAEQMLPRLNQI 180
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
VQEE V +G A++ + GDMR+ LN LQ+T F VN++NV+ P +++
Sbjct: 181 VQEEHVNVTDDGKNALLTLSKGDMRKVLNVLQSTSMAFDIVNEDNVYMCVGYPLRSEIEH 240
Query: 243 MVRNVLE-GKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
M++ +L F+ A +++ G + DI+T L I E+ + + + +
Sbjct: 241 MLQTLLSAATFESAYDTIEEAKTKRGLALEDIVTELHLFIMRLELPMSVMNKLIVKLAQV 300
Query: 301 HMRICDGVGSYLQLCGLLAKLSIVRE 326
R+ G Q L++ I R+
Sbjct: 301 EERLSKGCTEKAQTAALVSAFFISRD 326
>gi|281344058|gb|EFB19642.1| hypothetical protein PANDA_008377 [Ailuropoda melanoleuca]
Length = 318
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 118/313 (37%), Positives = 178/313 (56%), Gaps = 3/313 (0%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL-GPN 74
VEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA A +L
Sbjct: 1 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 60
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+ V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT AQ ALRR
Sbjct: 61 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 119
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
+E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL V++EEKV +G
Sbjct: 120 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIKEEKVDLSEDG 179
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A++ A GDMR+ALN LQ+T F V +E V+ P + N++ +L F
Sbjct: 180 MKALVTLASGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 239
Query: 255 ACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + +L L G + DI+T + + +++ + + R+ G +Q
Sbjct: 240 AYRNITELKTLKGLALHDILTETHLFVHRVDFPSSVRVHLLTKMADIEYRLSVGTNEKIQ 299
Query: 314 LCGLLAKLSIVRE 326
L L+A + R+
Sbjct: 300 LSSLIAAFQVTRD 312
>gi|330801691|ref|XP_003288858.1| hypothetical protein DICPUDRAFT_153140 [Dictyostelium purpureum]
gi|325081104|gb|EGC34633.1| hypothetical protein DICPUDRAFT_153140 [Dictyostelium purpureum]
Length = 348
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 121/321 (37%), Positives = 178/321 (55%), Gaps = 15/321 (4%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + D++ + D +A + +P+L+ GPPGTGKT++I A+A +L G
Sbjct: 27 LPWVEKYRPKSINDLIAHDDIIA-----TKSNTLPHLLFYGPPGTGKTSTIQAIARKLYG 81
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQK----KVTLPPGKHKVVVLDEADSMTAGAQ 128
NY V+ELNASDDRGIDVVR +IK FA T+P +K+++LDEADSMT AQ
Sbjct: 82 ENYSRMVLELNASDDRGIDVVREQIKTFASSMFFFNSTVP---YKLIILDEADSMTNIAQ 138
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKV 188
ALRR +E Y+ +TRF + CN KII +QSRC RF L D RL +++ E V
Sbjct: 139 TALRRVIEKYTKTTRFCIVCNYVVKIIPALQSRCTRFRFKPLPDSATEERLKEILKIENV 198
Query: 189 PYVPEGLEAIIFTADGDMRQALNNLQA-TYSGFRFVNQENVFKVCDQPHPLHVKNMVRNV 247
EG++A++F DGDMR++LN LQ+ + S + +E ++K P P ++ +
Sbjct: 199 QIDEEGMKAVLFLGDGDMRKSLNILQSVSMSTNGLIGEEQIYKCTGNPSPTDFHMVLEWL 258
Query: 248 LEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRIC 305
F A + + L G S TDII+ + +M L + + +
Sbjct: 259 FNEDFQTAFNNITDLKKKKGLSLTDIISYFPHFLMEMDDMPSILLCKALSHLSDIEFNLS 318
Query: 306 DGVGSYLQLCGLLAKLSIVRE 326
+G LQL L+ I+++
Sbjct: 319 NGASEKLQLGSLVGSFQILKD 339
>gi|407847432|gb|EKG03143.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 117/334 (35%), Positives = 186/334 (55%), Gaps = 10/334 (2%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
S+ ++ + +PWVEKYRP + ++V + D ++ + GN+P+L+ GPPGTGKTT+
Sbjct: 8 STGHAAKSSTLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTT 67
Query: 63 ILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKK----VTLPPG----KHK 113
I A A+ L G + R V+E+NASDDRGIDVVR +++ FA + P K
Sbjct: 68 IKACAYYLFGKDRIRANVLEMNASDDRGIDVVRQQVREFASTSSFYFASTPAAPTIAAFK 127
Query: 114 VVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDE 173
+V+LDEAD M+ AQ ALRR +E Y+ + RF + CN +KII +QSRC RF+ +
Sbjct: 128 LVILDEADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVKKS 187
Query: 174 EILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCD 233
+LSRL V QEE V + EGL A ++GD+R+ LN LQA+ + +E+V++V
Sbjct: 188 AMLSRLKFVAQEEGVRFTDEGLVAAFRLSNGDLRRCLNTLQASAMSAGEITEESVYRVTG 247
Query: 234 QPHPLHVKNMVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLE 292
P P V+ +V +++ F + + Q+ + G S TD++ + I+ ++ + K
Sbjct: 248 NPTPADVRGIVEDMIAHDFAASWEKVHQIVSEKGVSSTDLVREVHHIVMAMDLPQESKCF 307
Query: 293 FMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRE 326
+ + G + G+L +V+E
Sbjct: 308 LLMKLADVEYYAAGGAKETTCISGILGAFQLVKE 341
>gi|402593971|gb|EJW87898.1| replication factor C 5 [Wuchereria bancrofti]
Length = 347
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 121/332 (36%), Positives = 204/332 (61%), Gaps = 18/332 (5%)
Query: 8 SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
+ + ++PWVEKYRP + ++V + + + L + + +P+L+ GPPGTGKT++ILA A
Sbjct: 10 NGSINMPWVEKYRPASLTELVSHQEIIDTLMKLINENRLPHLLFYGPPGTGKTSTILAAA 69
Query: 68 HELLGPNYREA-VMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH-----KVVVLDEAD 121
L P + V+ELNASDDRGI +VR +I FAQ TL K+ K+V+LDEAD
Sbjct: 70 RMLYTPKQLSSMVLELNASDDRGIGIVREQIINFAQTS-TLNVDKNQSSVPKLVILDEAD 128
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
+MT AQ ALRR +E ++++ RF + CN SKII IQSRC +RF+ LS+E+IL RL
Sbjct: 129 AMTKDAQSALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLSNEQILPRLHH 188
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+V+ E + +G +A++ A+GDMR+ +N LQ+T F+ V++ NV++ P P V+
Sbjct: 189 IVRVESLTVTEDGQKALLNLAEGDMRRVINILQSTAMAFKTVDERNVYRCLGYPLPTDVE 248
Query: 242 NMVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTL----FRIIKNYEMAEHL-----KL 291
+V+ +L +DA + ++++ + ++ +DI+ ++ FR++ E+ L +
Sbjct: 249 KIVKILLNDSMEDAYTRIEEIRNERAFALSDILNSMHDFIFRLVVPPELLSRLLICMADI 308
Query: 292 EFMKEAGFA-HMRICDGVGSYLQLCGLLAKLS 322
E+ G + +++ +G+++ + LAKL+
Sbjct: 309 EYHLSQGCSDRLQLGALIGAFINIRNELAKLA 340
>gi|297842523|ref|XP_002889143.1| hypothetical protein ARALYDRAFT_476911 [Arabidopsis lyrata subsp.
lyrata]
gi|297334984|gb|EFH65402.1| hypothetical protein ARALYDRAFT_476911 [Arabidopsis lyrata subsp.
lyrata]
Length = 369
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 117/322 (36%), Positives = 183/322 (56%), Gaps = 10/322 (3%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + D+ + D + + + + +P+L+L GPPGTGKT++ILA+A +L GP
Sbjct: 40 PWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGP 99
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQ-KKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
YR ++ELNASDDRGIDVVR +I+ FA + +L K+V+LDEAD+MT AQ ALR
Sbjct: 100 KYRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALR 159
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R +E Y+ STRFAL N +KII +QSRC RF+ L + RL V++ E +
Sbjct: 160 RVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDPLHVSQRLKHVIEAEGLGVSD 219
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSG--------FRFVNQENVFKVCDQPHPLHVKNMV 244
GL A++ ++GDMR+ALN LQ+T+ + + +E V+ P P ++ +
Sbjct: 220 CGLAALVRLSNGDMRKALNILQSTHMASKEITEKESKKITEEEVYLCTGNPLPKDIEQIS 279
Query: 245 RNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
+L FD+ + ++ G + DI+ + + +M H+ ++ + + R
Sbjct: 280 HWLLNKPFDECYKNISEIKTRKGLAIVDIVREVTMFVLKIKMPSHVSVQLINDLADIEYR 339
Query: 304 ICDGVGSYLQLCGLLAKLSIVR 325
+ G LQL +++ + R
Sbjct: 340 LSFGCNDKLQLGAIISTFTHAR 361
>gi|388583076|gb|EIM23379.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 331
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 119/321 (37%), Positives = 182/321 (56%), Gaps = 15/321 (4%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + D+ + L + N+P+++ GPPGTGKT++ILAL+ +L G
Sbjct: 8 PWVEKYRPRTIEDVAAQDHTIRVLKKQLGNANLPHMLFYGPPGTGKTSTILALSRQLFGQ 67
Query: 74 NY-REAVMELNASDDRGIDVVRNKIKMFAQK------KVTLPPGKHKVVVLDEADSMTAG 126
+ + V+ELNASD+RGI+VVR KIK FA++ ++P +K+++LDEADSMT
Sbjct: 68 DLVKSRVLELNASDERGINVVREKIKNFAKQAPKASTSASVPA--YKIIILDEADSMTQD 125
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQ ALRRTME YS STRF L CN ++IIEP+ SRC+ RF L + + +RL + QEE
Sbjct: 126 AQSALRRTMETYSKSTRFCLVCNYVTRIIEPVASRCSKFRFKPLDESDSKARLEYIAQEE 185
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
+P ++A+I GD+RQA+ LQ+ + N + +N++ N
Sbjct: 186 NIPLNEGVIDALIDNTHGDLRQAITYLQSAARLHQASNSAITVDTITEIAGTIPENIIDN 245
Query: 247 VLE-----GKFDDACSGLKQLYDLGYSPTDIITTLF-RIIKNYEMAEHLKLEFMKEAGFA 300
+++ F + S +KQ++ GY+ ++ L + I+N +++ K + + A
Sbjct: 246 IIQVCSNKKNFKEIQSTIKQIHLFGYASAQVLLQLHDKFIENTSISDTSKSKAILSIAEA 305
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
+ DG LQL L KL
Sbjct: 306 DKALTDGADDELQLLNLAMKL 326
>gi|426217726|ref|XP_004003103.1| PREDICTED: replication factor C subunit 4 isoform 1 [Ovis aries]
Length = 364
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 126/329 (38%), Positives = 186/329 (56%), Gaps = 14/329 (4%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
SS + A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT++
Sbjct: 28 SSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 63 ILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKHK 113
ILA A EL GP +R V+ELNASD+RGI VVR K+K FAQ V+ PP K
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FK 145
Query: 114 VVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDE 173
+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD+
Sbjct: 146 IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDK 205
Query: 174 EILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFKV 231
RL+ + +E V EG+ ++ ++GD+R+A+ LQ+ +G + V ++ + +
Sbjct: 206 IQQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKVITDI 265
Query: 232 CDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLK 290
+ + G FD + +K L + G++ T ++ L +++N +++ K
Sbjct: 266 AGVVPAKTIDGVFAACQSGSFDKLEAVVKDLINEGHAATQLVNQLHDVVVENDNLSDKQK 325
Query: 291 LEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
++ + DG +LQL L A
Sbjct: 326 SIITEKLAEVDKCLADGADEHLQLISLCA 354
>gi|324511848|gb|ADY44927.1| Replication factor C subunit 5 [Ascaris suum]
Length = 341
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 188/315 (59%), Gaps = 8/315 (2%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D+V + + +A L + + +P+L+ GPPGTGKT++IL A +
Sbjct: 11 NMPWVEKYRPATLDDLVSHEEIIATLAKLVKKRRLPHLLFYGPPGTGKTSAILVAARMMF 70
Query: 72 GPNYREA-VMELNASDDRGIDVVRNKIKMFAQKKVTL---PPGKH--KVVVLDEADSMTA 125
P + V+ELNASDDRGI +VR++I FAQ K TL GK K+++LDEAD+MT
Sbjct: 71 TPKQLASMVLELNASDDRGIGIVRDQIMNFAQTK-TLHVDENGKSHIKLIILDEADAMTK 129
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRR +E ++ + RF + CN SKII +QSRC RF+ L +E+IL RL + +
Sbjct: 130 DAQNALRRVIEKFTENVRFCIICNYLSKIIPAVQSRCTRFRFAPLKEEQILPRLRHIAKS 189
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E + +G A++ A GDMR+ LN LQ+T F +++E+V+ QP P ++++VR
Sbjct: 190 ESLKLTEDGERALMKLAGGDMRRVLNILQSTAMAFPKIDEESVYLCVGQPLPSVIEDIVR 249
Query: 246 NVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRI 304
+L F+DA + ++ + L ++ +DI+ ++ + ++ + + + R+
Sbjct: 250 ILLNDSFEDAFTKIEGIRCLHAFALSDILASMQDAVYQLDIPSDVTCLLIAQMAQIEYRL 309
Query: 305 CDGVGSYLQLCGLLA 319
G +QL L+A
Sbjct: 310 ARGCTDRMQLAALIA 324
>gi|440891701|gb|ELR45251.1| Replication factor C subunit 4 [Bos grunniens mutus]
Length = 364
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 126/329 (38%), Positives = 186/329 (56%), Gaps = 14/329 (4%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
SS + A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT++
Sbjct: 28 SSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 63 ILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKHK 113
ILA A EL GP +R V+ELNASD+RGI VVR K+K FAQ V+ PP K
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--FK 145
Query: 114 VVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDE 173
+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD+
Sbjct: 146 IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDK 205
Query: 174 EILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFKV 231
RL+ + +E V EG+ ++ ++GD+R+A+ LQ+ +G + V ++ + +
Sbjct: 206 IQQQRLLDIADKEHVKISNEGIAYLVQVSEGDLRKAITFLQSATRLTGGKEVTEKVITDI 265
Query: 232 CDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLK 290
+ + G FD + +K L + G++ T ++ L +++N +++ K
Sbjct: 266 AGVVPAKTIDGVFAACQSGSFDKLEAVVKDLINEGHAATQLVNQLHDVVVENDNLSDKQK 325
Query: 291 LEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
++ + DG +LQL L A
Sbjct: 326 SIITEKLAEVDKCLADGADEHLQLISLCA 354
>gi|71662047|ref|XP_818036.1| replication factor C, subunit 3 [Trypanosoma cruzi strain CL
Brener]
gi|70883263|gb|EAN96185.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 117/334 (35%), Positives = 186/334 (55%), Gaps = 10/334 (2%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
S+ ++ + +PWVEKYRP + ++V + D ++ + GN+P+L+ GPPGTGKTT+
Sbjct: 8 STGHAAKSSTLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTT 67
Query: 63 ILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKK----VTLPPG----KHK 113
I A A+ L G + R V+E+NASDDRGIDVVR +++ FA + P K
Sbjct: 68 IKACAYYLFGKDRIRANVLEMNASDDRGIDVVRQQVREFASTSSFYFASAPAAPTIAAFK 127
Query: 114 VVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDE 173
+V+LDEAD M+ AQ ALRR +E Y+ + RF + CN +KII +QSRC RF+ +
Sbjct: 128 LVILDEADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVKKS 187
Query: 174 EILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCD 233
+LSRL V QEE V + EGL A ++GD+R+ LN LQA+ + +E+V++V
Sbjct: 188 AMLSRLKFVAQEEGVRFTDEGLVAAFRLSNGDLRRCLNTLQASAMSAGEITEESVYRVTG 247
Query: 234 QPHPLHVKNMVRNVLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYEMAEHLKLE 292
P P V+ +V +++ F + + Q + + G S TD++ + I+ ++ + K
Sbjct: 248 NPTPADVRGIVEDMIAHDFAASWEKVHQTVSEKGVSSTDLVREVHHIVMAMDLPQESKCF 307
Query: 293 FMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRE 326
+ + G + G+L +V+E
Sbjct: 308 LLMKLADVEYYAAGGAKETTCISGILGAFQLVKE 341
>gi|50287127|ref|XP_445993.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525300|emb|CAG58917.1| unnamed protein product [Candida glabrata]
Length = 352
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 127/339 (37%), Positives = 186/339 (54%), Gaps = 18/339 (5%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
+ S++ + ++ PWVEKYRP K+ D+ V L N+P+++ GPPGTGKT++
Sbjct: 15 TESAAEAEHNKPWVEKYRPKKLDDVAAQDHVVNVLKKTLSSANLPHMLFYGPPGTGKTST 74
Query: 63 ILALAHELLGPNY-REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH--------- 112
ILAL EL GP + V+ELNASD+RGI +VR K+K FA+ V+ P KH
Sbjct: 75 ILALTKELFGPELMKTRVLELNASDERGISIVREKVKNFARLTVS-KPSKHDLENYLCPP 133
Query: 113 -KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLS 171
K+++LDEADSMTA AQ ALRRTME YS TRF L CN ++II+P+ SRC+ RF L
Sbjct: 134 YKIIILDEADSMTADAQSALRRTMETYSTVTRFCLICNYVTRIIDPLASRCSKFRFKSLD 193
Query: 172 DEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT-----YSGFRFVNQE 226
L RL V +EE V LE I+ + GD+R+A+ LQ+ YSG V++E
Sbjct: 194 SSNALQRLKYVAEEEGVKVKAGSLETILDISAGDLRRAITLLQSASKNIGYSGEDEVSKE 253
Query: 227 NVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLF-RIIKNYEM 285
V ++ +K +V V F+ +++ G+S +++ L IK+ E
Sbjct: 254 LVEELAAVVPESSIKQIVELVATRDFNKISEYIQEFTRNGWSAASVVSQLHDYYIKSSEY 313
Query: 286 AEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324
K + ++ +G ++QL +L K+S V
Sbjct: 314 DTAFKNKVSIILFDTDSKLTNGTNEHIQLLNMLIKISQV 352
>gi|19921076|ref|NP_609399.1| replication factor C subunit 3 [Drosophila melanogaster]
gi|195339815|ref|XP_002036512.1| GM18361 [Drosophila sechellia]
gi|195578201|ref|XP_002078954.1| GD23698 [Drosophila simulans]
gi|7533196|gb|AAF63387.1|AF247499_1 replication factor C subunit 3 [Drosophila melanogaster]
gi|21430740|gb|AAM51048.1| SD11293p [Drosophila melanogaster]
gi|22946159|gb|AAF52944.2| replication factor C subunit 3 [Drosophila melanogaster]
gi|194130392|gb|EDW52435.1| GM18361 [Drosophila sechellia]
gi|194190963|gb|EDX04539.1| GD23698 [Drosophila simulans]
gi|220950744|gb|ACL87915.1| RfC3-PA [synthetic construct]
gi|220959368|gb|ACL92227.1| RfC3-PA [synthetic construct]
Length = 332
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 117/326 (35%), Positives = 187/326 (57%), Gaps = 4/326 (1%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
S +S A +PWVEKYRP+ + D++ + + ++ + +P+L+ GPPGTGKT++I
Sbjct: 2 SETSGPAVRMPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTI 61
Query: 64 LALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
LA A +L P ++ V+ELNASDDRGI +VR +I FA + T+ K+++LDEAD+
Sbjct: 62 LACARQLYSPQQFKSMVLELNASDDRGIGIVRGQILNFASTR-TIFCDTFKLIILDEADA 120
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT AQ ALRR +E Y+++ RF + CN SKII +QSRC RF+ LS ++++ RL +
Sbjct: 121 MTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKI 180
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
++ E V +G A++ A GDMR+ LN LQ+T F VN++NV+ P ++
Sbjct: 181 IEAEAVQITEDGKRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNVYMCVGYPLRQDIEQ 240
Query: 243 MVRNVLEG-KFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
+++ +L G +D+ ++ Y G + DIIT L + E+ + + + +
Sbjct: 241 ILKALLSGSSLEDSFKTVESAKYARGLALEDIITELHLFVMRLELPMSVMNKLIVKLAQI 300
Query: 301 HMRICDGVGSYLQLCGLLAKLSIVRE 326
R+ G Q L+A I R+
Sbjct: 301 EERLAKGCTEVAQTAALVAAFFICRD 326
>gi|301758022|ref|XP_002914857.1| PREDICTED: replication factor C subunit 4-like [Ailuropoda
melanoleuca]
gi|281350719|gb|EFB26303.1| hypothetical protein PANDA_002794 [Ailuropoda melanoleuca]
Length = 363
Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 125/330 (37%), Positives = 184/330 (55%), Gaps = 14/330 (4%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS + +PWVEKYRP V +I + VA L ++PNL+ GPPGTGKT+
Sbjct: 26 GSSGENKKTKPVPWVEKYRPKCVDEIAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 85
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP +R V+ELNASD+RGI VVR K+K FAQ V+ PP
Sbjct: 86 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--F 143
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD
Sbjct: 144 KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD 203
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFK 230
+ RL+ + +E V EG+ ++ ++GD+R+A+ LQ+ +G + + ++ +
Sbjct: 204 KIQQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITD 263
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHL 289
+ + + G FD + +K L D G++ T ++ +++N +++
Sbjct: 264 IAGVIPAQTIDGIFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQFHDVVVENDNLSDKQ 323
Query: 290 KLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
K ++ + DG +LQL L A
Sbjct: 324 KSIITEKLAEVDKCLADGADEHLQLISLCA 353
>gi|5263320|gb|AAD41422.1|AC007727_11 Similar to gb|M87339 replication factor C, 37-kDa subunit from Homo
sapiens and is a member of PF|00004 ATPases associated
with various cellular activities [Arabidopsis thaliana]
Length = 319
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 169/312 (54%), Gaps = 31/312 (9%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP +V D+ + V L + + P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 74 N-YREAVMELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGKHKVVVLDEADSMTA 125
Y+ V+ELNASDDRGI+VVR KIK FA ++ P K+++LDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS+E + +R++ + E
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E + E L + + GD+R+A+ LQ PL V N +
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQVV--------------------PLEVVNKLF 229
Query: 246 NVLE-GKFDDACSGLKQLYDLGYSPTDIITTLFRII--KNYEMAEHLKLEFMKEAGFAHM 302
+ G FD A + + GY + II LF I+ + ++ + K + K
Sbjct: 230 TACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDK 289
Query: 303 RICDGVGSYLQL 314
R+ DG YLQL
Sbjct: 290 RLVDGADEYLQL 301
>gi|357463515|ref|XP_003602039.1| Replication factor C subunit [Medicago truncatula]
gi|355491087|gb|AES72290.1| Replication factor C subunit [Medicago truncatula]
Length = 355
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 184/315 (58%), Gaps = 11/315 (3%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WVEKYRP + D+ + D V + + + +P+L+L GPPGTGKT++ILA+A +L G
Sbjct: 34 WVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 93
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH---KVVVLDEADSMTAGAQQAL 131
Y ++ELNASDDRGIDVVR +I+ FA + +L G K+V+LDEAD+MT AQ AL
Sbjct: 94 YHNMILELNASDDRGIDVVRQQIQDFASTQ-SLSFGVKPSVKLVLLDEADAMTKDAQFAL 152
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR +E Y+ STRFAL CN +KII +QSRC RF+ L + RL V+ E++
Sbjct: 153 RRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAERLDVQ 212
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
GL A++ ++GDMR+ALN LQ+T+ + + +E V+ P P ++ + +L +
Sbjct: 213 DSGLSALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQ 272
Query: 252 FDDACSGLKQLYDL----GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDG 307
+ ++ K++YD+ G + DI+ + + M ++++ + + R+ G
Sbjct: 273 YSES---FKRIYDMKTRKGLALIDIVREVTMFVFKINMPSAVRVQLVNDLADIEYRLSFG 329
Query: 308 VGSYLQLCGLLAKLS 322
LQL ++A +
Sbjct: 330 CNDKLQLGSVVASFT 344
>gi|21703948|ref|NP_663455.1| replication factor C subunit 4 [Mus musculus]
gi|81916548|sp|Q99J62.1|RFC4_MOUSE RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 subunit 4
gi|13097123|gb|AAH03335.1| Replication factor C (activator 1) 4 [Mus musculus]
gi|74147363|dbj|BAE27563.1| unnamed protein product [Mus musculus]
gi|148665244|gb|EDK97660.1| replication factor C (activator 1) 4 [Mus musculus]
Length = 364
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 127/330 (38%), Positives = 186/330 (56%), Gaps = 14/330 (4%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS + +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 27 GSSGETKKVKPVPWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTS 86
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP +R V+ELNASD+RGI VVR K+K FAQ V+ PP
Sbjct: 87 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--F 144
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD
Sbjct: 145 KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD 204
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFK 230
+ RL+ + ++E V E + ++ ++GD+R+A+ LQ+ +G + V+++ +
Sbjct: 205 KIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITD 264
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLF-RIIKNYEMAEHL 289
+ + + G FD + +K L D G++ T ++ L II+N +++
Sbjct: 265 IAGVIPAATIDGIFTACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKH 324
Query: 290 KLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
K ++ + DG +LQL L A
Sbjct: 325 KSIITEKLAEVDKCLADGADEHLQLMSLCA 354
>gi|119872170|ref|YP_930177.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
gi|150415670|sp|A1RSA2.1|RFCS1_PYRIL RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|119673578|gb|ABL87834.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
Length = 329
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 122/319 (38%), Positives = 177/319 (55%), Gaps = 6/319 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W EKYRP ++V + +RL + GNMP+L+ GPPGTGKTT L LA EL G
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQALR 132
+RE +ELNASD+RGI+V+R ++K FA+ T P GK K+V+LDEAD+MT+ AQQALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQALR 122
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R MEIY+ +TRF L N S+II+PI SRCA+ RFS + + RL + + E V
Sbjct: 123 RIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLKYIAKSEGVEVKE 182
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+ ++ I ++GDMR+A+N LQ + + V++ V P + + L G +
Sbjct: 183 DAIDLIYELSEGDMRKAINILQVAAATNKIVDRNVVAAAAAAIRPTDIVELFNLALSGDY 242
Query: 253 DDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A +++L Y G + D I R + + + K E + R+ G
Sbjct: 243 LKAREKMRELMYVKGVAGVDFIRAFQRELIRMSLDDETKAEVAELLADVDYRLTQGADEE 302
Query: 312 LQLCGLLAKLSIVRETAKA 330
+QL LAKL + + +A
Sbjct: 303 IQLSYFLAKLGSIGKKIRA 321
>gi|448351100|ref|ZP_21539909.1| replication factor C [Natrialba taiwanensis DSM 12281]
gi|445634784|gb|ELY87958.1| replication factor C [Natrialba taiwanensis DSM 12281]
Length = 1031
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 174/284 (61%), Gaps = 10/284 (3%)
Query: 44 GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQK 103
G++P ++ TT+ A+A E+ ++RE +ELNASD RGIDVVR++IK FA
Sbjct: 757 GDIPTVM-------HNTTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFA-- 807
Query: 104 KVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCA 163
+ + H+++ LDEAD++T+ AQ ALRRTME +SN+TRF L+CN SS+II+PIQSRCA
Sbjct: 808 RASFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCA 867
Query: 164 IVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFV 223
+ RF+ L+++ I +++ + + E + +G++A+++ ADGDMR+A+N LQA V
Sbjct: 868 VFRFTELTEDAIEAQVREIAETEGIEVTDDGVDALVYAADGDMRKAINALQAAAVMGETV 927
Query: 224 NQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKN 282
++E VF + P V+ MV + + G F A + L+ L D G + D+I L R
Sbjct: 928 DEETVFAITATARPEEVEEMVDHAIAGDFTAARATLEDLLTDRGLAGGDVIDQLHRSAWT 987
Query: 283 YEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRE 326
+++ E + ++ G RI +G LQL +LA L++ E
Sbjct: 988 FDIPEQATVRLLERLGEVDFRITEGANERLQLEAMLASLALEDE 1031
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK--TTSILALAHELLG 72
W+EKYRP ++ +I G+ + V RL ++P+L+ AGP GTGK T L +E +
Sbjct: 21 WIEKYRPERLDEIKGHENIVPRLERYVEQDDLPHLMFAGPAGTGKCVTGETPVLTNEGIT 80
Query: 73 P 73
P
Sbjct: 81 P 81
>gi|255558636|ref|XP_002520343.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223540562|gb|EEF42129.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 360
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 180/315 (57%), Gaps = 3/315 (0%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + D+ + D V + + + +P+L+L GPPGTGKT++ILA+A +L G
Sbjct: 38 PWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGV 97
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH--KVVVLDEADSMTAGAQQAL 131
Y ++ELNASDDRGIDVVR +I+ FA + K K+V+LDEAD+MT AQ AL
Sbjct: 98 QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFDAKSAVKLVLLDEADAMTKDAQFAL 157
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR +E Y+ +TRFAL CN +KII +QSRC RF+ L + RL V++ E +
Sbjct: 158 RRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDPIHVTDRLKHVIEAEGLDVP 217
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
GL A++ ++GDMR+ALN LQ+T+ + + +E V P P ++ + +L
Sbjct: 218 EPGLAAVVRLSNGDMRKALNILQSTHMASQQITEEAVHLCTGNPLPKDIQQISYWLLNES 277
Query: 252 FDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
F ++ + ++ G + DI+ + + +M ++++ + + R+ G
Sbjct: 278 FAESFKRISEIKTKKGLALVDIVREVTMFVFKIKMPSDVRVQLINDMADIEYRLSFGCSD 337
Query: 311 YLQLCGLLAKLSIVR 325
LQL L+A + R
Sbjct: 338 KLQLGSLVASFTWAR 352
>gi|448366855|ref|ZP_21554886.1| replication factor C [Natrialba aegyptia DSM 13077]
gi|445653764|gb|ELZ06624.1| replication factor C [Natrialba aegyptia DSM 13077]
Length = 1030
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 174/284 (61%), Gaps = 10/284 (3%)
Query: 44 GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQK 103
G++P ++ TT+ A+A E+ ++RE +ELNASD RGIDVVR++IK FA
Sbjct: 756 GDIPTVM-------HNTTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFA-- 806
Query: 104 KVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCA 163
+ + H+++ LDEAD++T+ AQ ALRRTME +SN+TRF L+CN SS+II+PIQSRCA
Sbjct: 807 RASFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCA 866
Query: 164 IVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFV 223
+ RF+ L+++ I +++ + + E + +G++A+++ ADGDMR+A+N LQA V
Sbjct: 867 VFRFTELTEDAIEAQVREIAETEGIEVTDDGVDALVYAADGDMRKAINALQAAAVMGETV 926
Query: 224 NQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKN 282
++E VF + P V+ MV + + G F A + L+ L D G + D+I L R
Sbjct: 927 DEETVFAITATARPEEVEEMVDHAIAGDFTAARATLEDLLTDRGLAGGDVIDQLHRSAWT 986
Query: 283 YEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRE 326
+++ E + ++ G RI +G LQL +LA L++ E
Sbjct: 987 FDIPERATVRLLERLGEVDFRITEGANERLQLEAMLASLALEDE 1030
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
W+EKYRP ++ +I G+ + V RL ++P+L+ AGP GTGK
Sbjct: 21 WIEKYRPERLDEIKGHENIVPRLERYVEQDDLPHLMFAGPAGTGK 65
>gi|448320709|ref|ZP_21510195.1| replication factor C [Natronococcus amylolyticus DSM 10524]
gi|445605611|gb|ELY59533.1| replication factor C [Natronococcus amylolyticus DSM 10524]
Length = 1029
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 184/316 (58%), Gaps = 18/316 (5%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
DI VE R + G + VA G++P ++ TT+ A+A E+
Sbjct: 730 DIERVEDERRVYDLTVPGTRNYVA--------GDVPTVM-------HNTTAAQAIAREVY 774
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
++RE +ELNASD RGIDVVR++IK FA + + H+++ LDEAD++T+ AQ AL
Sbjct: 775 DDDWRENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYDHRIIFLDEADALTSDAQSAL 832
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTME +SN+TRF L+CN SS+II+PIQSRCA+ RF+ L+++ + +++ + + E +
Sbjct: 833 RRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAVEAQIRDIAENEGIEVT 892
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
+G++A+++ ADGDMR+A+N LQA V++E VF + P V+ MV ++G
Sbjct: 893 DDGVDALVYAADGDMRKAINGLQAAAVMGEVVDEETVFAITSTARPEEVEAMVDQAIDGD 952
Query: 252 FDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
F A + L+ L + G + D+I L R +++ E + ++ G RI +G
Sbjct: 953 FTAARAALEDLLTERGLAGGDVIDQLHRSAWQFDLPEKATVRLLERLGEVDYRITEGANE 1012
Query: 311 YLQLCGLLAKLSIVRE 326
LQL +LA L++ E
Sbjct: 1013 RLQLEAMLASLALENE 1028
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK--TTSILALAHELLG 72
W+EKYRP ++ +I G+ + V RL ++P+L+ AGP GTGK T L +E +
Sbjct: 19 WIEKYRPERLDEIKGHENIVPRLQRYVEQDDLPHLMFAGPAGTGKCVTGETPVLTNEGVA 78
Query: 73 P 73
P
Sbjct: 79 P 79
>gi|194859928|ref|XP_001969482.1| GG10129 [Drosophila erecta]
gi|190661349|gb|EDV58541.1| GG10129 [Drosophila erecta]
Length = 332
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/326 (35%), Positives = 187/326 (57%), Gaps = 4/326 (1%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
S +S A +PWVEKYRP+ + D++ + + ++ + +P+L+ GPPGTGKT++I
Sbjct: 2 SETSGPAVRMPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTI 61
Query: 64 LALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
LA A +L P ++ V+ELNASDDRGI +VR +I FA + T+ K+++LDEAD+
Sbjct: 62 LACARQLYSPQQFKSMVLELNASDDRGIGIVRGQILNFASTR-TIFCDTFKLIILDEADA 120
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT AQ ALRR +E Y+++ RF + CN SKII +QSRC RF+ LS ++++ RL +
Sbjct: 121 MTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKI 180
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
++ E V +G A++ A GDMR+ LN LQ+T F VN++NV+ P ++
Sbjct: 181 IEAEAVQITDDGKRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNVYMCVGYPLRQDIEQ 240
Query: 243 MVRNVLEGK-FDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
+++ +L G +D+ ++ Y G + DIIT L + E+ + + + +
Sbjct: 241 ILKALLSGNSLEDSFKTVESAKYARGLALEDIITELHLFVMRLELPMSVMNKLIVKLAQI 300
Query: 301 HMRICDGVGSYLQLCGLLAKLSIVRE 326
R+ G Q L+A I R+
Sbjct: 301 EERLAKGCTEVAQTAALVAAFFICRD 326
>gi|378727708|gb|EHY54167.1| replication factor C subunit 3/5 [Exophiala dermatitidis
NIH/UT8656]
Length = 408
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 187/344 (54%), Gaps = 38/344 (11%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D+ G+ D +A + +P+L+L GPPGTGKT++ILALA ++
Sbjct: 45 NLPWVEKYRPNTLDDVSGHKDILATINRFIEQNKLPHLLLYGPPGTGKTSTILALARQIY 104
Query: 72 GP-NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPP-------------GKHKVVVL 117
GP N R+ V+ELNASDDRGIDVVR +IK FA K G K+++L
Sbjct: 105 GPKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSASTQQGPSGAKFGLGAFKLIIL 164
Query: 118 DEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILS 177
DEAD+MT+ AQ ALRR ME Y+ +TRF + N + K+ + SRC RFS L E+I
Sbjct: 165 DEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKKEDIRR 224
Query: 178 RLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFR---------------- 221
+ V+ EEKV P+ +E+++ + GDMR+ALN LQA ++G R
Sbjct: 225 LVDHVIAEEKVNIAPDAVESLVELSKGDMRRALNVLQACHAGSRPLPIRGQPPVKDADVK 284
Query: 222 --FVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDAC----SGLKQLYDLGYSPTDIITT 275
+ + ++ PHP ++ ++ +L +C + LK G + DI+T
Sbjct: 285 YELITNDTIYNCIAAPHPEDIRLIMTTMLSTPDMTSCMNTINALKS--SRGLALADILTA 342
Query: 276 LFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
L ++N E++ ++ +++ R+ G +Q G++
Sbjct: 343 LAEELQNLEVSAATRVTWLQGLAEIEYRLAGGGSESVQTGGMVG 386
>gi|198413770|ref|XP_002129710.1| PREDICTED: similar to replication factor C (activator 1) 5 (36.5
kDa) [Ciona intestinalis]
Length = 327
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/329 (35%), Positives = 185/329 (56%), Gaps = 9/329 (2%)
Query: 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
S S ++PWVEKYRP + D++ + D ++ + +P+L+ GPPGTGKT++ILA
Sbjct: 2 SKSTPNLPWVEKYRPESLDDLISHEDILSTISGFLAQNRLPHLLFYGPPGTGKTSTILAC 61
Query: 67 AHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
A +L + V+ELNASDDRGI VVRN+I FA + G K+++LDEAD+MT
Sbjct: 62 ARKLYSTTQFNSMVLELNASDDRGIGVVRNQILSFASTRTIFNKG-FKLIILDEADAMTK 120
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRR ME + +TRF L CN +KII IQSRC RF L+ ++I SRL +++
Sbjct: 121 DAQNALRRVMEKFMENTRFCLICNYLTKIIPAIQSRCTRFRFGPLTTDKISSRLEYIIKV 180
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E++ +GL A++ A+GDMR+ALN LQ++ + V+++ V+K +P +K +++
Sbjct: 181 EQLNVTEDGLNALVTLANGDMRKALNILQSSSMAYNEVDEDGVYKCTGRPRRDDIKKIMK 240
Query: 246 NVLEGKFDDACSGLKQLYDLGYSPT----DIITTLFRIIKNYEMAEHLKLEFMKEAGFAH 301
+L +D + + + +L + + DII + + +++ + +
Sbjct: 241 WMLN---EDYTTAYRSIMELNMTTSMALQDIIEQIHLFVHEVHFPVAVRIYLLDKLADIE 297
Query: 302 MRICDGVGSYLQLCGLLAKLSIVRETAKA 330
R+ G LQL L++ R A
Sbjct: 298 HRLASGTSEKLQLGSLVSAFQHARNIVAA 326
>gi|291407082|ref|XP_002719834.1| PREDICTED: replication factor C 5 [Oryctolagus cuniculus]
Length = 342
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/313 (37%), Positives = 179/313 (57%), Gaps = 3/313 (0%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL-GPN 74
VEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA A +L
Sbjct: 25 VEKYRPQTLNDLISHRDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 84
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+ V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT AQ ALRR
Sbjct: 85 FGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 143
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
+E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+EEKV +G
Sbjct: 144 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVYVSEDG 203
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+I + GDMR+ALN LQ+T F V +E V+ P + N++ +L F
Sbjct: 204 MKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 263
Query: 255 ACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + +L + G + DI+T + + + +++ + + R+ G +Q
Sbjct: 264 AYRNIMELKTVKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLAVGTNEKIQ 323
Query: 314 LCGLLAKLSIVRE 326
L L+A + R+
Sbjct: 324 LSSLIAAFQVTRD 336
>gi|221052961|ref|XP_002257855.1| replication factor C, subunit 2 [Plasmodium knowlesi strain H]
gi|193807687|emb|CAQ38391.1| replication factor C, subunit 2, putative [Plasmodium knowlesi
strain H]
Length = 330
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 181/326 (55%), Gaps = 35/326 (10%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP K+ DIV +AV+ L + R NMP+LI GPPGTGKT++I ALAHEL
Sbjct: 3 NLPWVEKYRPKKLDDIVHQTNAVSMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELF 62
Query: 72 G-PNYREAVMELNASDDRGIDVVRNKIKMFAQKKV-----------TLPPGKHKVVVLDE 119
G N E V+ELNASDDRGI+VVR KIK + + + TLPP K +VVLDE
Sbjct: 63 GRDNISERVLELNASDDRGINVVREKIKAYTRISISKNKINSETNETLPPWK--LVVLDE 120
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
AD MT AQ ALRR +EIYSN TRF L CN KI +PI SRC+ RF + + +L
Sbjct: 121 ADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPIDVKKEKL 180
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH 239
+ + + E + + + L+ II T GD+R+A++ LQ + E+V V P
Sbjct: 181 LYICKSEGINILDDALDKIIETTQGDLRRAVSILQLCSCIDPMITLESVLDVSGLP---- 236
Query: 240 VKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDII------TTLFRIIKNY-----EMAEH 288
+ + K DAC +K L ++ + DII +F+ + NY E +
Sbjct: 237 -----ADDIISKIIDACK-MKDLKNVEKAVQDIIEDGYDVAYIFKSLNNYFVMNTEYQDS 290
Query: 289 LKLEFMKEAGFAHMRICDGVGSYLQL 314
+K + + E R+ G Y+QL
Sbjct: 291 VKSQILLELSRHDYRLHSGATKYIQL 316
>gi|343113485|gb|AEL87701.1| replication factor C 4 [Strongylocentrotus nudus]
Length = 355
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 121/328 (36%), Positives = 188/328 (57%), Gaps = 10/328 (3%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
+S+ S+ +PWVEKYRP V ++ + VA L + ++PN++ GPPGTGKT+
Sbjct: 17 SSTGGSTKQRQVPWVEKYRPRTVDEVAYQDEVVAVLKKSLQGADLPNMLFYGPPGTGKTS 76
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKV--TLPPGK----HKV 114
+ILA + EL G + YR V+ELNASD+RGI VVR+K+K FAQ P GK K+
Sbjct: 77 TILAASRELFGADMYRSRVLELNASDERGIQVVRDKVKKFAQTAAGGIRPDGKPRPPFKI 136
Query: 115 VVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEE 174
++LDEADSMT AQ ALRRTME S +T+F L CN S+IIEP+ SRC+ RF LS
Sbjct: 137 IILDEADSMTNDAQAALRRTMEKQSKNTKFCLICNYISRIIEPLTSRCSKFRFKPLSKPI 196
Query: 175 ILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFR--FVNQENVFKVC 232
+L + + E + E L+AI+ ++GDMR+++ LQ+ + R + E+V+++
Sbjct: 197 QGKKLREICEVENINCGEEALDAILKLSEGDMRKSITFLQSVHRLQREDGIRVEDVYEIA 256
Query: 233 DQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRII-KNYEMAEHLKL 291
+ +++++ G ++ +++L GYS + ++ +F II + E+ + K
Sbjct: 257 GVIPDRIIDDLIQSCYGGSYEKLDEKVQELLQDGYSASQVVNQIFDIIVERGELTDTQKS 316
Query: 292 EFMKEAGFAHMRICDGVGSYLQLCGLLA 319
+ R+CDG LQ+ L
Sbjct: 317 AIAERLAVIDKRLCDGADEGLQIMDLFT 344
>gi|429329431|gb|AFZ81190.1| replication factor C subunit 3, putative [Babesia equi]
Length = 345
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/331 (35%), Positives = 181/331 (54%), Gaps = 13/331 (3%)
Query: 8 SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
SS+ PWVEKYRP DI+ + D ++ L I A G +P+L+ GPPGTGKT++I+A++
Sbjct: 2 SSSLAAPWVEKYRPETFEDIISHEDIMSTLMIFAEKGQLPHLLFHGPPGTGKTSTIMAIS 61
Query: 68 HELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH---------KVVVLD 118
L G V+ELNASD+RGID VR +IK F++ T K+++LD
Sbjct: 62 RYLYGNQKNGFVLELNASDERGIDTVREQIKAFSETTNTFSNTSAQDSNIKTTLKLIILD 121
Query: 119 EADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSR 178
EAD MT AQ ALRR MEIYS++ RF L CN +KII PIQSRC RF L + + R
Sbjct: 122 EADQMTNAAQNALRRIMEIYSSNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKPDFVRKR 181
Query: 179 LMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT---YSGFRFVNQENVFKVCDQP 235
+ + + E + GL+ +I GDMR+ LN LQ T YS ++ + P
Sbjct: 182 IRDIAEMENLKLSDCGLDTLIQIGQGDMRRVLNCLQVTAMSYSKGNVIDANLILTTSGMP 241
Query: 236 HPLHVKNMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFM 294
++++++ +++ F ++ L +L+ L GYS DI+ L++ I + ++ +
Sbjct: 242 QNSEIEHLLQTLMQCSFKESVDELNELHHLKGYSVEDIVKGLYKAILKIDWPNVPIIQLI 301
Query: 295 KEAGFAHMRICDGVGSYLQLCGLLAKLSIVR 325
R+ G + +Q+ +++ + VR
Sbjct: 302 MRLADIEERLSAGATASIQIASIVSAFAEVR 332
>gi|327282022|ref|XP_003225743.1| PREDICTED: replication factor C subunit 4-like [Anolis
carolinensis]
Length = 364
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 131/323 (40%), Positives = 183/323 (56%), Gaps = 22/323 (6%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + ++ + VA L + ++PNL+ GPPGTGKT++ILA A EL G
Sbjct: 39 LPWVEKYRPKCMDEVAFQEEVVAVLKKCLQGADLPNLLFYGPPGTGKTSTILAAARELFG 98
Query: 73 PN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKHKVVVLDEADSM 123
+R+ V+ELNASD+RGI V+R K+K FAQ V+ PP K+V+LDEADSM
Sbjct: 99 TELFRQRVLELNASDERGIQVIREKVKRFAQLTVSGSRSDGKLCPP--FKIVILDEADSM 156
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T+ AQ ALRRTME S +TRF L CN S+IIEPI SRC+ RF LSD+ RL+ V
Sbjct: 157 TSAAQAALRRTMEKESKTTRFCLICNYISRIIEPITSRCSKFRFKPLSDKIQRQRLVEVA 216
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVF-KVCDQPHPLHVKN 242
++E V E + ++ ++GD+R+A+ LQ S R + + V K+ + + +
Sbjct: 217 EKENVAVSSEAISYLVHVSEGDLRKAITLLQ---SATRLMGGKEVTEKIVTEIAGVIPRE 273
Query: 243 MVRNVL----EGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAG 298
M+ VL G F+ + K L D GY+ T +I L +I E + + E
Sbjct: 274 MLDGVLASCQSGSFEKLEAVTKNLIDEGYAATQLINQLHDVIVEREDLSDKQKSIIAEK- 332
Query: 299 FAHMRIC--DGVGSYLQLCGLLA 319
A + C DG +LQL L A
Sbjct: 333 LAEVDKCLVDGSDEFLQLTSLCA 355
>gi|15223967|ref|NP_177871.1| replication factor C subunit 3 [Arabidopsis thaliana]
gi|12323400|gb|AAG51681.1|AC010704_25 putative replication factor C; 24844-22715 [Arabidopsis thaliana]
gi|17529332|gb|AAL38893.1| putative replication factor C [Arabidopsis thaliana]
gi|21436375|gb|AAM51357.1| putative replication factor C [Arabidopsis thaliana]
gi|332197861|gb|AEE35982.1| replication factor C subunit 3 [Arabidopsis thaliana]
Length = 369
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/322 (36%), Positives = 185/322 (57%), Gaps = 10/322 (3%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + D+ + D + + + + +P+L+L GPPGTGKT++ILA+A +L GP
Sbjct: 40 PWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGP 99
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQ-KKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
YR ++ELNASDDRGIDVVR +I+ FA + +L K+V+LDEAD+MT AQ ALR
Sbjct: 100 KYRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALR 159
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R +E Y+ STRFAL N +KII +QSRC RF+ L + RL V++ E++
Sbjct: 160 RVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSD 219
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSG--------FRFVNQENVFKVCDQPHPLHVKNMV 244
GL A++ ++GDMR+ALN LQ+T+ + + +E+V+ P P ++ +
Sbjct: 220 CGLAALVRLSNGDMRKALNILQSTHMASKEITEEESKQITEEDVYLCTGNPLPKDIEQIS 279
Query: 245 RNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
+L FD+ + ++ G + DI+ + I +M ++++ + + R
Sbjct: 280 HWLLNKPFDECYKDVSEIKTRKGLAIVDIVKEITLFIFKIKMPSAVRVQLINDLADIEYR 339
Query: 304 ICDGVGSYLQLCGLLAKLSIVR 325
+ G LQL +++ + R
Sbjct: 340 LSFGCNDKLQLGAIISTFTHAR 361
>gi|451927446|gb|AGF85324.1| replication factor C small subunit [Moumouvirus goulette]
Length = 322
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 176/309 (56%), Gaps = 2/309 (0%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
IPW+EKYRP + +I+ +++ ++ I D +LI GPPG GKT++ +A +LG
Sbjct: 5 IPWIEKYRPATIDEIIFDINIRKQINIFLEDKKNVHLIFTGPPGIGKTSTARCIAKTMLG 64
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+ + +E+NA++DRG+ + +I F +K + K +++LDEAD MT+ Q +
Sbjct: 65 EHMQAGYLEINAAEDRGVRSMSTRIPPFCKKVIDFTTSK--IILLDEADIMTSKCQYDIN 122
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
++ + N T+F CN S+KIIE +QS C I+RF +L+D +I S L + ++EK+ Y
Sbjct: 123 NMIKEFGNKTKFIFTCNDSTKIIEDLQSVCRILRFKKLTDNQISSYLSKICEKEKIEYDK 182
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
GL+ I + + GDMR+++N+LQ T + V + V K+C P P +K ++ L+G
Sbjct: 183 SGLDTIYYISYGDMRKSINDLQKTACTYNKVTKNTVLKICRVPDPEEIKKIINLCLKGNL 242
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
+A + + L + DI+++ ++ Y+M E KL+ + + G+ S L
Sbjct: 243 MEADKEMNDIIKLDFCYFDIVSSFVYVLSTYDMEECFKLQLIDIVNKTKTNVSKGLHSRL 302
Query: 313 QLCGLLAKL 321
QL G++ ++
Sbjct: 303 QLSGMICRI 311
>gi|403218101|emb|CCK72593.1| hypothetical protein KNAG_0K02300 [Kazachstania naganishii CBS
8797]
Length = 334
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 182/314 (57%), Gaps = 8/314 (2%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP+ + D+ G + V+ L ++ +P+L+ GPPGTGKT++I+ALA E+ G
Sbjct: 6 LPWVEKYRPSSLDDVYGQGEIVSVLHKFIQENRLPHLLFYGPPGTGKTSTIVALAREIYG 65
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
NY V+ELNASDDRGIDVVRN+IK FA + G K+V+LDEAD+MT AQ ALR
Sbjct: 66 KNYSHMVLELNASDDRGIDVVRNQIKEFASTRQIFSRG-FKLVILDEADAMTNAAQNALR 124
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R +E Y+ +TRF + N S K+ +QSRC RF L ++ I R+ V+ E +
Sbjct: 125 RIIEKYTKNTRFCILANYSHKLTPALQSRCTRFRFQPLPEDAIKRRIANVLVHEHLRVSE 184
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGF-----RFVNQENVFKVCDQPHPLHVKNMVRNV 247
+ ++A+I + GDMR+ LN LQA+ + V+ + +++ C P ++ +++++
Sbjct: 185 DAVQALIKLSKGDMRRVLNVLQASKATLGDDESDEVSTDTIYECCGAARPADLRKILKSI 244
Query: 248 LEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMA-EHLKLEFMKEAGFAHMRIC 305
LE ++ A L ++ + G + D+I + I+ YE+ E ++ + I
Sbjct: 245 LEEDWNTAYYTLHKIRQEQGLALIDLIEGIMEILDQYELQHEQTRINLCMKLADLEYAIS 304
Query: 306 DGVGSYLQLCGLLA 319
G S +Q L+
Sbjct: 305 KGGDSKIQSSALIG 318
>gi|321456941|gb|EFX68037.1| hypothetical protein DAPPUDRAFT_301682 [Daphnia pulex]
Length = 356
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 120/314 (38%), Positives = 182/314 (57%), Gaps = 9/314 (2%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
IPWVEKYRP + ++ + VA L + ++PNL+ GPPGTGKT++ILA A +L G
Sbjct: 34 IPWVEKYRPRTIDEVSYQEEVVAVLQKSLQGADLPNLLFYGPPGTGKTSTILAAARDLFG 93
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVT--LPPGKH----KVVVLDEADSMTAG 126
Y++ V+ELNASD+RGI VVR K+K+F+Q+ V+ P GK K+V+LDEADSMT
Sbjct: 94 DIYKDRVLELNASDERGIQVVREKVKIFSQRTVSSVRPDGKQCPPFKIVILDEADSMTGA 153
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQ ALRRTME + STRF L CN S+IIEP+ SRC+ RF L E ++ RL + E
Sbjct: 154 AQAALRRTMEKETKSTRFCLICNYVSRIIEPLTSRCSKFRFKPLPREILVKRLEHICIAE 213
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQ--ATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
+ E LE++I ++GD+R+A+ LQ A + E+++++ + ++ ++
Sbjct: 214 NMSCSEEVLESLIEASEGDLRRAITFLQSIANLNSEACPTIEDIYEITGRVPSCWIEGLL 273
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLF-RIIKNYEMAEHLKLEFMKEAGFAHMR 303
G +D S + G+S + ++ L RI+ + E++ K ++ R
Sbjct: 274 EKCTSGSYDAMQSFINNFSAEGFSVSQLLNQLHERIVFSTELSSKQKNVICEKLAICDHR 333
Query: 304 ICDGVGSYLQLCGL 317
+ +G LQL L
Sbjct: 334 LAEGADEQLQLLDL 347
>gi|242066704|ref|XP_002454641.1| hypothetical protein SORBIDRAFT_04g034710 [Sorghum bicolor]
gi|241934472|gb|EES07617.1| hypothetical protein SORBIDRAFT_04g034710 [Sorghum bicolor]
Length = 362
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 118/319 (36%), Positives = 181/319 (56%), Gaps = 11/319 (3%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + D+ + D V + + + +P+L+L GPPGTGKT++ILA+A +L G
Sbjct: 40 PWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGS 99
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH---KVVVLDEADSMTAGAQQA 130
Y ++ELNASD+RGIDVVR +I+ FA + +L G K+V+LDEAD+MT AQ A
Sbjct: 100 QYSNMILELNASDERGIDVVRQQIQDFAGAR-SLSFGARPSVKLVLLDEADAMTKDAQFA 158
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E Y+ STRFAL CN +KII +QSRC RF+ L + RL +++ E +
Sbjct: 159 LRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHIIKSEGLSV 218
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
GL A++ ++GDMR+ALN LQ+T+ + + +E V+ P P ++ + +L
Sbjct: 219 DEGGLTALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPMPNDIERIAFWLLNE 278
Query: 251 KFDDACSGLKQLYDL----GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICD 306
F + K + D+ G + DII + + EM ++++ + R+
Sbjct: 279 PF---STSFKHISDMKMRKGLALVDIIREVTMFVFKIEMPSDVRVKLINNLADIEYRLSF 335
Query: 307 GVGSYLQLCGLLAKLSIVR 325
LQL L++ + R
Sbjct: 336 ACNDKLQLGALISAFTDTR 354
>gi|389585221|dbj|GAB67952.1| replication factor C3 [Plasmodium cynomolgi strain B]
Length = 344
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/312 (37%), Positives = 172/312 (55%), Gaps = 6/312 (1%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + DI+ + ++ + G +P+L+L GPPGTGKT++ILA+ EL G
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIQKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGE 73
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKK---VTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGI VVR++IK FA+ K T K+++LDEAD MT AQ A
Sbjct: 74 SRSSFVLELNASDDRGISVVRDQIKTFAESKNHYNTCEKTSLKLIILDEADHMTYPAQNA 133
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
+RR ME Y+ + RF L CN +KI IQSRC RFS L E ++++ + + + E V
Sbjct: 134 MRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMINKALDIAKSENVDL 193
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFR--FVNQENVFKVCDQPHPLHVKNMVRNVL 248
+GLE++I GDMR+ LN LQ + ++Q + D P P VK+++ +
Sbjct: 194 TKDGLESLIRVGRGDMRRILNCLQVVSLSHKNMTIDQNVILSTLDIPLPEEVKDILEHFT 253
Query: 249 EGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDG 307
+ ++ + +L GYS DI+ L+ I Y+ + +K G R G
Sbjct: 254 KSTIKESYEFVTKLQSTKGYSIKDIMVNLYESILTYDFPDSAVCLLLKSFGEIEERCSSG 313
Query: 308 VGSYLQLCGLLA 319
+ L L++
Sbjct: 314 ANEQITLSALIS 325
>gi|268576128|ref|XP_002643044.1| Hypothetical protein CBG22959 [Caenorhabditis briggsae]
Length = 353
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/284 (40%), Positives = 171/284 (60%), Gaps = 16/284 (5%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
S++ ++PWVEKYRP+K+ ++V + V L + +P+L+ GPPGTGKTT++LA
Sbjct: 4 STTVVSNLPWVEKYRPSKLNELVAHEQVVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLA 63
Query: 66 LAHELLGPNYREA-VMELNASDDRGIDVVRNKIKMFAQKK-----------VTLPPGKHK 113
A ++ P+ + V+ELNASD+RGIDVVRN I FAQ K ++P K
Sbjct: 64 AARKMYHPSKMSSMVLELNASDERGIDVVRNTIVNFAQTKGLQAFASASDKDSVP---FK 120
Query: 114 VVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDE 173
+V+LDEAD+MT AQ ALRR +E Y+++ RF + CN + II IQSRC RF+ L
Sbjct: 121 LVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAPLDQS 180
Query: 174 EILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCD 233
I+ RL +V+ E + P+G EA++ + GDMR +N LQ+T F V++ V++
Sbjct: 181 LIVPRLDFIVKSEGLQMTPDGREALLRVSKGDMRTVINTLQSTAMSFEVVSESTVYQCIG 240
Query: 234 QPHPLHVKNMVRNVLEGKFDDACSGLKQ-LYDLGYSPTDIITTL 276
QP P +K +V +L + +K+ L++ GY+ D+IT L
Sbjct: 241 QPTPAEMKKVVTLLLNQTAKTCMNKIKKSLFENGYALQDVITHL 284
>gi|147905139|ref|NP_001082757.1| replication factor C (activator 1) 4, 37kDa [Xenopus laevis]
gi|34097966|dbj|BAC82198.1| replication factor C p37 subunit [Xenopus laevis]
gi|120537910|gb|AAI29743.1| RFC2 protein [Xenopus laevis]
Length = 363
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 124/328 (37%), Positives = 189/328 (57%), Gaps = 10/328 (3%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
S+ S IPWVEKYRP V ++ + VA L + ++PNL+ GPPGTGKT+
Sbjct: 26 GSTGESKKQKPIPWVEKYRPKCVDEVAFQDEVVAVLKKSLQGADLPNLLFYGPPGTGKTS 85
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKV--TLPPGK----HKV 114
+ILA + EL GP +R+ V+ELNASD+RGI VVR K+K FAQ V T GK K+
Sbjct: 86 TILAASRELYGPELFRQRVLELNASDERGIQVVREKVKNFAQLTVGGTRSDGKPCPPFKI 145
Query: 115 VVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEE 174
++LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF L+D+
Sbjct: 146 IILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLADKI 205
Query: 175 ILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQ--ATYSGFRFVNQENVFKVC 232
RL+ + ++E V E + ++ ++GD+R+A+ LQ A + + + +E V ++
Sbjct: 206 QTQRLLSICEKENVQITNEAISCLVEVSEGDLRKAITFLQSAARLTRGKEITEEIVTEIA 265
Query: 233 DQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRII-KNYEMAEHLKL 291
+ +++ G F+ + +K L + G++ T ++ L +I + ++ + K
Sbjct: 266 GVVPKETLDSVLVVCQSGSFEKLENFVKDLINNGHAATQLVNQLHDVILERGDLTDKQKA 325
Query: 292 EFMKEAGFAHMRICDGVGSYLQLCGLLA 319
++ + DG YLQ+ GL A
Sbjct: 326 FITEKLADVDKCLTDGADEYLQMLGLFA 353
>gi|219363377|ref|NP_001136580.1| replication factor C subunit 3 [Zea mays]
gi|194696262|gb|ACF82215.1| unknown [Zea mays]
gi|413939151|gb|AFW73702.1| replication factor C subunit 3 [Zea mays]
Length = 362
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/319 (36%), Positives = 182/319 (57%), Gaps = 11/319 (3%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + D+ + D V + + + +P+L+L GPPGTGKT++ILA+A +L G
Sbjct: 40 PWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGS 99
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH---KVVVLDEADSMTAGAQQA 130
Y ++ELNASD+RGIDVVR +I+ FA + +L G K+V+LDEAD+MT AQ A
Sbjct: 100 QYSNMILELNASDERGIDVVRQQIQDFAGAR-SLSFGARPSVKLVLLDEADAMTKDAQFA 158
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E Y+ STRFAL CN +KII +QSRC RF+ L + RL +++ E +
Sbjct: 159 LRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHIIKSEGLSV 218
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
GL A++ ++GDMR+ALN LQ+T+ + + +E V+ P P ++ + +L
Sbjct: 219 DDGGLTALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPMPKDIEQIAFWLLNE 278
Query: 251 KFDDACSGLKQLYDL----GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICD 306
F + K + D+ G + DII + + +M ++++ + + R+
Sbjct: 279 PF---STSFKYISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRVKLINDLADIEYRLSF 335
Query: 307 GVGSYLQLCGLLAKLSIVR 325
LQL L++ + R
Sbjct: 336 ACNDKLQLGALISTFTDTR 354
>gi|342183622|emb|CCC93102.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 290
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/271 (40%), Positives = 161/271 (59%), Gaps = 10/271 (3%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + ++V + + + + GNMP+L+ GPPGTGKTT+I A AH L G
Sbjct: 18 LPWVEKYRPATLSEVVAHEEILETTQRLMDSGNMPHLLFYGPPGTGKTTTIKASAHYLYG 77
Query: 73 PN-YREAVMELNASDDRGIDVVRNKIKMFAQKKV--------TLPPGKHKVVVLDEADSM 123
R V+E+NASDDRGIDVVRN+I+ FA T K+V+LDEAD M
Sbjct: 78 KERIRANVLEMNASDDRGIDVVRNQIREFASTSSVFFNSASKTSAMSSFKLVILDEADQM 137
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
++ AQ ALRR +E Y+ + RF + CN +KII +QSRC RF+ + +L RL +
Sbjct: 138 SSDAQAALRRIIEKYTRNVRFCIVCNHINKIIPALQSRCTRFRFAPVKKAAMLPRLAFIA 197
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
QEE +P+ +GL A ++GDMR+ LN LQA+ + +E+V++ P P V+ +
Sbjct: 198 QEESIPFTNDGLVAAFRLSNGDMRRCLNTLQASAMSTGEITEESVYRTTGNPTPADVRGL 257
Query: 244 VRNVLEGKFDDACSG-LKQLYDLGYSPTDII 273
V +L + + + L+ + + G S TD++
Sbjct: 258 VEEMLSSDYATSWNRVLRAVTEKGMSSTDLV 288
>gi|296817467|ref|XP_002849070.1| replication factor C subunit 3 [Arthroderma otae CBS 113480]
gi|238839523|gb|EEQ29185.1| replication factor C subunit 3 [Arthroderma otae CBS 113480]
Length = 397
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/336 (34%), Positives = 186/336 (55%), Gaps = 28/336 (8%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D+ G+ D +A + +P+L+L GPPGTGKT++ILALA +
Sbjct: 44 NLPWVEKYRPDTLDDVSGHQDIIATINRFVESNRLPHLLLYGPPGTGKTSTILALARRIY 103
Query: 72 GP-NYREAVMELNASDDRGIDVVRNKIKMFAQKK---VTLPP-----GKHKVVVLDEADS 122
G N R+ V+ELNASDDRGIDVVR +IK FA K T P G K+++LDEAD+
Sbjct: 104 GSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADA 163
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT+ AQ ALRR ME Y+ +TRF + N + K+ + SRC RFS L +++I + V
Sbjct: 164 MTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRKLVDTV 223
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-----------------RFVNQ 225
+ +E+V P+ +++++ + GDMR+ALN LQA ++ + +
Sbjct: 224 IDKEQVQIQPDAIDSLVKLSKGDMRRALNVLQACHASSMPLPSKKGEANESPEERELITE 283
Query: 226 ENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLY--DLGYSPTDIITTLFRIIKNY 283
E ++ PHP ++ ++ +L +C Q + G + DIIT L +++
Sbjct: 284 ETIYTCIAAPHPTDIRTILETLLSTSDVTSCLNTVQTLKSNKGLALADIITALSTELQSL 343
Query: 284 EMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
E+ +++ +++ R+ G +Q G++
Sbjct: 344 EVPPQVRVSWIEGLADVEWRLSGGGSEAIQTGGMIG 379
>gi|18312140|ref|NP_558807.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
gi|42559513|sp|Q8ZYK4.1|RFCS1_PYRAE RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|18159573|gb|AAL62989.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
Length = 329
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 173/313 (55%), Gaps = 6/313 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W EKYRP ++V + ARL + GNMP+L+ GPPGTGKTT L LA EL G
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQALR 132
+RE +ELNASD+RGI+V+R ++K FA+ T P GK K+V+LDEAD+MT+ AQQALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQALR 122
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R MEIY+ +TRF L N S+II+PI SRCA+ RFS + + RL + + E V
Sbjct: 123 RIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKFIAKNEGVELRE 182
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+ + I ++GDMR+A+N LQ + + V+ V P + + + G F
Sbjct: 183 DAINMIYELSEGDMRKAINLLQVAAATNKVVDANAVASAAIAVRPADIIELFNLAISGDF 242
Query: 253 DDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A L++L Y G + D I R + + + +K E + R+ G
Sbjct: 243 VKAREKLRELMYLKGIAGADFIRAFQRELIRMPIDDDIKAEIAELLADVDYRLTQGADEE 302
Query: 312 LQLCGLLAKLSIV 324
+QL LL KL +
Sbjct: 303 IQLTYLLTKLGAI 315
>gi|281209635|gb|EFA83803.1| replication factor C subunit [Polysphondylium pallidum PN500]
Length = 347
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 115/321 (35%), Positives = 179/321 (55%), Gaps = 5/321 (1%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + ++ + D + + ++P+L+ GPPGTGKT++I A+A +L G
Sbjct: 20 LPWVEKYRPKDLSGLIAHEDITDTVSKLIAKNSLPHLLFYGPPGTGKTSTIQAIARKLYG 79
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+Y V+ELNASDDRGIDVVR +IK FA +K+++LDEADSMT AQ ALR
Sbjct: 80 ESYSRMVLELNASDDRGIDVVREQIKTFASSMFMFSNYPYKLIILDEADSMTNPAQTALR 139
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R +E Y+ +TRF + CN SKI+ +QSRC RFS L I R+ +++ E +
Sbjct: 140 RVIEKYTRTTRFCMICNYVSKILPALQSRCTRFRFSPLPRSAITKRMKEIIECESLKVND 199
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRF---VNQENVFKVCDQPHPLHVKNMVRNVLE 249
+ L +II ++GDMR+ LN LQ+ ++++ +++ QP P +K ++ L
Sbjct: 200 DALNSIITLSEGDMRKCLNILQSASMSIDVGTTIDKDTIYRCTGQPLPTDIKKILMWSLN 259
Query: 250 GKFDDACSGLKQL-YDLGYSPTDIITTL-FRIIKNYEMAEHLKLEFMKEAGFAHMRICDG 307
+ +A + + +L + G S TDII + F +K + +KE + G
Sbjct: 260 QSYIEALNNILELKKEKGLSLTDIIKEIHFMTLKVPNIGGPALWNLVKELSDIEYNLSFG 319
Query: 308 VGSYLQLCGLLAKLSIVRETA 328
LQL +L ++R+ A
Sbjct: 320 ASEKLQLGSMLGSFQVIRDEA 340
>gi|226290876|gb|EEH46304.1| replication factor C subunit 3 [Paracoccidioides brasiliensis Pb18]
Length = 395
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 122/338 (36%), Positives = 188/338 (55%), Gaps = 34/338 (10%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D+ G+ D + + +P+L+L GPPGTGKT++ILALA +
Sbjct: 44 NLPWVEKYRPNSLDDVSGHHDIIGTINRFIDSNRLPHLLLYGPPGTGKTSTILALARRIY 103
Query: 72 G-PNYREAVMELNASDDRGIDVVRNKIKMFAQKK--VTLPP--------GKHKVVVLDEA 120
G N R+ V+ELNASDDRGIDVVR++IK FA K ++ P G K+++LDEA
Sbjct: 104 GVKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSMAPVAKSESSLGAFKLIILDEA 163
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D+MTA AQ ALRR ME Y+ + RF + N + K+ + SRC RFS L +++I + +
Sbjct: 164 DAMTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRALVN 223
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSG-----------------FRFV 223
V+++E+V PE +++++ + GDMR+ALN LQA ++ V
Sbjct: 224 QVIEKEQVRIQPEAIDSLVELSKGDMRRALNVLQACHASSIPLPMKNAPKDRPSAEHETV 283
Query: 224 NQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDL----GYSPTDIITTLFRI 279
+QE ++ PHP +K ++ +L D S L + L G + DI+T L
Sbjct: 284 SQETIYTCIAAPHPSDIKTIITALLTTS--DVTSCLNTIQTLKSNKGLALVDILTALSAE 341
Query: 280 IKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGL 317
++ E+ ++ +M+ R+ G G +Q GL
Sbjct: 342 LQRIEVPAAARVVWMEGLADIEWRLASGGGEMVQTGGL 379
>gi|115449001|ref|NP_001048280.1| Os02g0775200 [Oryza sativa Japonica Group]
gi|46805779|dbj|BAD17147.1| putative replication factor C 36kDa subunit [Oryza sativa Japonica
Group]
gi|46806135|dbj|BAD17365.1| putative replication factor C 36kDa subunit [Oryza sativa Japonica
Group]
gi|113537811|dbj|BAF10194.1| Os02g0775200 [Oryza sativa Japonica Group]
gi|215697717|dbj|BAG91711.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218191668|gb|EEC74095.1| hypothetical protein OsI_09136 [Oryza sativa Indica Group]
Length = 361
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 118/327 (36%), Positives = 183/327 (55%), Gaps = 9/327 (2%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
SS+ PWVEKYRP + D+ + D V + + + +P+L+L GPPGTGKT++IL
Sbjct: 30 SSTPGGRAAPWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTIL 89
Query: 65 ALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH--KVVVLDEADS 122
A+A +L G Y ++ELNASD+RGIDVVR +I+ FA + K K+V+LDEAD+
Sbjct: 90 AVARKLYGSQYGNMILELNASDERGIDVVRQQIQDFASARSLSFGAKQSVKMVLLDEADA 149
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT AQ ALRR +E ++ STRFAL CN +KII +QSRC RF+ L + RL +
Sbjct: 150 MTKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRERLKHI 209
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
+Q E + GL A++ ++GDMR+ALN LQ+T+ + + +E V+ P P ++
Sbjct: 210 IQSEGLDVDDGGLTALVRLSNGDMRKALNILQSTHMASKQITEEAVYLCTGNPMPKDIEQ 269
Query: 243 MVRNVLEGKFDDACSGLKQLYDL----GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAG 298
+ +L F + K + D+ G + DII + + +M ++++ + +
Sbjct: 270 IAYWLLNESF---STSFKCISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRIKLINDLA 326
Query: 299 FAHMRICDGVGSYLQLCGLLAKLSIVR 325
R+ LQL L++ + R
Sbjct: 327 DIEYRLSFACNDKLQLGALISTFTGAR 353
>gi|50309079|ref|XP_454545.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643680|emb|CAG99632.1| KLLA0E13201p [Kluyveromyces lactis]
Length = 329
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 110/319 (34%), Positives = 181/319 (56%), Gaps = 7/319 (2%)
Query: 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH 68
++ ++PW+EKYRP + D+ G + V + +G +P+L+ GPPGTGKT++I+ALA
Sbjct: 4 TSENLPWIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAR 63
Query: 69 ELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQ 128
E+ G NYR V+ELNASDDRGIDVVRN+IK FA + G K+++LDEAD+MT AQ
Sbjct: 64 EIYGSNYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKG-FKLIILDEADAMTNAAQ 122
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKV 188
ALRR +E Y+ +TRF + N + K+ + SRC RF LS++ I R+ V+ +E +
Sbjct: 123 NALRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKEHL 182
Query: 189 PYVPEGLEAIIFTADGDMRQALNNLQATYSGF-----RFVNQENVFKVCDQPHPLHVKNM 243
P+ A++ + GDMR+ALN LQA + V ++ +++ PHP ++ M
Sbjct: 183 KLDPQAHAALLRLSSGDMRRALNVLQAARATLDNPDTEEVTEDLIYECIGAPHPRDLETM 242
Query: 244 VRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHM 302
+ ++L+ + + ++ G + D+I + +++ YE+ ++E +
Sbjct: 243 LESILKDDWTTTTYTVNKIRITKGLALIDMIEGIAGLLEQYELKPQTRIELLSRLSDIEY 302
Query: 303 RICDGVGSYLQLCGLLAKL 321
I G +Q + +
Sbjct: 303 SISRGGTDSIQTSATIGTI 321
>gi|156100055|ref|XP_001615755.1| replication factor C3 [Plasmodium vivax Sal-1]
gi|148804629|gb|EDL46028.1| replication factor C3, putative [Plasmodium vivax]
Length = 344
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 116/312 (37%), Positives = 173/312 (55%), Gaps = 6/312 (1%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + DI+ + ++ + G +P+L+L GPPGTGKT++ILA+ EL G
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIQKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGE 73
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKK---VTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGI VVR++IK FA+ K T K+++LDEAD MT AQ A
Sbjct: 74 SRSSFVLELNASDDRGISVVRDQIKTFAESKNHYNTCEKTTLKLIILDEADHMTYPAQNA 133
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
+RR ME Y+ + RF L CN +KI IQSRC RFS L E ++++ + + + E V
Sbjct: 134 MRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMVNKALDIAKSENVDL 193
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFR--FVNQENVFKVCDQPHPLHVKNMVRNVL 248
+GLE++I GDMR+ LN LQ + ++Q + D P P VK+++ ++
Sbjct: 194 TQDGLESLIRVGRGDMRRILNCLQVVSLSHKNMTIDQNVILSTLDIPLPEEVKDILEHLT 253
Query: 249 EGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDG 307
+ ++ + +L GYS DI+ L+ I Y+ + +K G R G
Sbjct: 254 KSTIKESYEFVTKLQCSKGYSIKDIMVNLYESILTYDFPDSAVCLLLKNFGEIEERCSTG 313
Query: 308 VGSYLQLCGLLA 319
+ L L++
Sbjct: 314 ANEQITLSALIS 325
>gi|225459599|ref|XP_002285868.1| PREDICTED: replication factor C subunit 5 [Vitis vinifera]
gi|302141794|emb|CBI18997.3| unnamed protein product [Vitis vinifera]
Length = 360
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 114/312 (36%), Positives = 178/312 (57%), Gaps = 3/312 (0%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + D+ + D V + + + +P+L+L GPPGTGKT++ILA+A +L G
Sbjct: 38 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGE 97
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH--KVVVLDEADSMTAGAQQAL 131
+ ++ELNASDDRGIDVVR +I+ FA + K K+V+LDEAD+MT AQ AL
Sbjct: 98 QFHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKSSVKLVLLDEADAMTKDAQFAL 157
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR +E Y+ +TRFAL CN +KII +QSRC RF+ L + RL V+ EK+
Sbjct: 158 RRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAEKLDVS 217
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
GL A++ + GDMR+ALN LQ+T+ + + +E V+ P P ++ + +L
Sbjct: 218 ESGLAALVRLSSGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNES 277
Query: 252 FDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
F + + ++ G + D++ + + +M ++++ + + R+ G
Sbjct: 278 FAASFDRISEVKMRKGLALVDVVREVTMFVFKIKMPSDVRVQLINDLADIEYRLSFGCND 337
Query: 311 YLQLCGLLAKLS 322
LQL L+A +
Sbjct: 338 KLQLGSLIASFT 349
>gi|367007401|ref|XP_003688430.1| hypothetical protein TPHA_0O00240 [Tetrapisispora phaffii CBS 4417]
gi|357526739|emb|CCE65996.1| hypothetical protein TPHA_0O00240 [Tetrapisispora phaffii CBS 4417]
Length = 352
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 120/331 (36%), Positives = 181/331 (54%), Gaps = 24/331 (7%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + D+ AVA L N+P+++ GPPGTGKT++ILAL EL GP
Sbjct: 25 PWVEKYRPRNLDDVAAQDHAVAVLKRTLGSANLPHMLFYGPPGTGKTSTILALTKELFGP 84
Query: 74 NY-REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK---------HKVVVLDEADSM 123
+ V+ELNASD+RGI +VR K+K FA+ V+ P +K+++LDEADSM
Sbjct: 85 QLVKSRVLELNASDERGISIVREKVKNFARLTVSKPSKDDLENYPCPPYKIIILDEADSM 144
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
TA AQ ALRRTME YS TRF L CN ++II+P+ SRC+ RF L + L RL V
Sbjct: 145 TADAQSALRRTMETYSTVTRFCLICNYVTRIIDPLASRCSKFRFKALDETNALDRLKYVA 204
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPH-----PL 238
+E Y LE I+ + GD+R+A+ LQ+ F N+ ++ + P
Sbjct: 205 TQESTKYEEGTLEKILQISAGDLRRAITLLQSVSKSSTF-NKSDMITIKKVEELAGVVPE 263
Query: 239 HVKNMVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
+ N + ++E K DA + + + G+S ++ L +Y +++ +F
Sbjct: 264 SIINQILKIIESKDVDAITAFTRTFIKNGWSGAAVVDQLH---DHYITSDNYSTQFKNSV 320
Query: 298 GF----AHMRICDGVGSYLQLCGLLAKLSIV 324
+ A ++ +G ++QL +L K+S++
Sbjct: 321 SWILFNADSKLLNGTNEHIQLLNVLVKISLI 351
>gi|225459627|ref|XP_002285875.1| PREDICTED: replication factor C subunit 4 isoform 2 [Vitis
vinifera]
Length = 329
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 172/310 (55%), Gaps = 21/310 (6%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP +V D+ +D P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 10 PWVEKYRPKQVKDVAH------------QDEVCPHMLFYGPPGTGKTTTALAIAHQLFGP 57
Query: 74 N-YREAVMELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGKHKVVVLDEADSMTA 125
Y+ V+ELNASDDRGI+VVR KIK FA ++ P +K+++LDEADSMT
Sbjct: 58 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIIILDEADSMTE 117
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS+E + SR++ + +E
Sbjct: 118 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKE 177
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMV 244
E++ E L + + GD+R+A+ LQ F ++ +++ V V+ +
Sbjct: 178 EELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVVPQHVVQALF 237
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRI 304
G FD A + + GY + ++ LF ++ ++++ K K A +
Sbjct: 238 AACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEADISDEQKARICKRLAEADKCL 297
Query: 305 CDGVGSYLQL 314
DG YLQL
Sbjct: 298 VDGADEYLQL 307
>gi|156093657|ref|XP_001612867.1| replication factor C subunit 2 [Plasmodium vivax Sal-1]
gi|148801741|gb|EDL43140.1| replication factor C subunit 2, putative [Plasmodium vivax]
Length = 330
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 131/326 (40%), Positives = 180/326 (55%), Gaps = 35/326 (10%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP K+ DIV +AV+ L + R NMP+LI GPPGTGKT++I ALAHEL
Sbjct: 3 NLPWVEKYRPKKLDDIVHQTNAVSMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELF 62
Query: 72 G-PNYREAVMELNASDDRGIDVVRNKIKMFAQKKV-----------TLPPGKHKVVVLDE 119
G N E V+ELNASDDRGI+VVR KIK + + + TLPP K +VVLDE
Sbjct: 63 GRDNISERVLELNASDDRGINVVREKIKAYTRISISKNKINSETNETLPPWK--LVVLDE 120
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
AD MT AQ ALRR +EIYSN TRF L CN KI +PI SRC+ RF + +L
Sbjct: 121 ADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPINIKKDKL 180
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH 239
+ + + E + + + L+ II T GD+R+A++ LQ + E+V V P
Sbjct: 181 LYICKSEGINILDDALDKIIETTQGDLRRAVSILQLCSCIDPMITLESVLDVSGLP---- 236
Query: 240 VKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDII------TTLFRIIKNY-----EMAEH 288
+ + K DAC +K L ++ + D+I +F+ + NY E +
Sbjct: 237 -----ADDIISKIIDACK-MKDLKNVEKAVQDVIEDGYDVAYIFKSLNNYFVMNTEYQDS 290
Query: 289 LKLEFMKEAGFAHMRICDGVGSYLQL 314
+K + + E R+ G Y+QL
Sbjct: 291 VKSQILLELSRHDYRLHSGATKYIQL 316
>gi|195628076|gb|ACG35868.1| replication factor C subunit 3 [Zea mays]
Length = 362
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 117/319 (36%), Positives = 181/319 (56%), Gaps = 11/319 (3%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + D+ + D V + + + +P+L+L GPPGTGKT++ILA+A +L G
Sbjct: 40 PWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGS 99
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH---KVVVLDEADSMTAGAQQA 130
Y ++ELNASD+RGIDVVR +I+ FA + +L G K+V+LDEAD+MT AQ A
Sbjct: 100 QYSNMILELNASDERGIDVVRQQIQDFAGAR-SLSFGARPSVKLVLLDEADAMTKDAQFA 158
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E Y+ STRFAL CN +KII +QSRC RF+ L + RL +++ E +
Sbjct: 159 LRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHIIKSEGLSV 218
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
GL A++ ++GDMR+ALN LQ+T+ + + +E V+ P P ++ + +L
Sbjct: 219 DDGGLTALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPMPKDIEQIAFWLLNE 278
Query: 251 KFDDACSGLKQLYDL----GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICD 306
F + K + D+ G + DII + + +M ++++ + R+
Sbjct: 279 PF---STSFKYISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRVKLINNLADIEYRLSF 335
Query: 307 GVGSYLQLCGLLAKLSIVR 325
LQL L++ + R
Sbjct: 336 ACNDKLQLGALISTFTDTR 354
>gi|170589810|ref|XP_001899666.1| Putative activator 1 36 kDa subunit [Brugia malayi]
gi|158592792|gb|EDP31388.1| Putative activator 1 36 kDa subunit, putative [Brugia malayi]
Length = 347
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 121/332 (36%), Positives = 199/332 (59%), Gaps = 18/332 (5%)
Query: 8 SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
S ++PWVEKYRP + ++V + + L + + +P+L+ GPPGTGKT++ILA A
Sbjct: 10 SGMINMPWVEKYRPASLTELVSHQEITDTLMKLINENRLPHLLFYGPPGTGKTSTILAAA 69
Query: 68 HELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH-----KVVVLDEAD 121
L V+ELNASDDRGI +VR +I FAQ TL K+ K+++LDEAD
Sbjct: 70 RMLYTSKQLSSMVLELNASDDRGIGIVREQIINFAQTS-TLNVDKNQSSVPKLIILDEAD 128
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
+MT AQ ALRR +E ++++ RF + CN SKII IQSRC +RF+ LS+E+IL RL
Sbjct: 129 AMTKDAQSALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLSNEQILPRLHH 188
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+VQ E + +G +A++ A+GDMR+ +N LQ+T F+ V++ NV++ P P V+
Sbjct: 189 IVQVETLTVTEDGQKALLNLAEGDMRRVINILQSTAMAFKTVDEPNVYRCVGYPLPTDVE 248
Query: 242 NMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTL----FRIIKNYEMAEHL-----KL 291
+V+ +L +DA + ++++ + ++ +DI+ ++ FR++ E+ L +
Sbjct: 249 KIVKILLNDSIEDAYTKIEEIRTERAFALSDILNSMHEFIFRLVVPPELLSRLLICMADI 308
Query: 292 EFMKEAGFA-HMRICDGVGSYLQLCGLLAKLS 322
E+ G + +++ +G+++ LAKL+
Sbjct: 309 EYHLSQGCSDRLQLGALIGAFINTRNELAKLA 340
>gi|124810138|ref|XP_001348775.1| replication factor C3 [Plasmodium falciparum 3D7]
gi|11559500|gb|AAG37985.1|AF069296_1 replication factor C3 [Plasmodium falciparum]
gi|23497675|gb|AAN37214.1|AE014826_13 replication factor C3 [Plasmodium falciparum 3D7]
Length = 344
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 117/312 (37%), Positives = 171/312 (54%), Gaps = 6/312 (1%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + DI+ + ++ + + G +P+L+L GPPGTGKT++ILA+ EL G
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGD 73
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKK---VTLPPGKHKVVVLDEADSMTAGAQQA 130
V+ELNASDDRGI+V+R++IK FA+ K T K+++LDEAD MT AQ A
Sbjct: 74 KRSSFVLELNASDDRGINVIRDQIKTFAESKNHYTTCEKTTLKLIILDEADHMTYPAQNA 133
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
+RR ME Y+ + RF L CN +KI IQSRC RF+ L E + ++ + + + E V
Sbjct: 134 MRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALDIAKSENVNL 193
Query: 191 VPEGLEAIIFTADGDMRQALNNLQ-ATYSGFRFVNQENV-FKVCDQPHPLHVKNMVRNVL 248
G++++I GDMR+ LN LQ + S V ENV D P P K ++
Sbjct: 194 TEGGIDSLIRVGHGDMRRILNCLQVVSLSHKNLVIDENVILSTLDIPLPSETKKILEYFT 253
Query: 249 EGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDG 307
+G ++ + L YD GYS DI+ L+ + Y+ + +K G R G
Sbjct: 254 KGSIKESYEFVSNLQYDKGYSTKDIMMCLYESVLTYDFPDSAFCLLLKNFGEIEERCSSG 313
Query: 308 VGSYLQLCGLLA 319
+ L L++
Sbjct: 314 ASEQITLSALIS 325
>gi|301117462|ref|XP_002906459.1| replication factor C subunit 4 [Phytophthora infestans T30-4]
gi|262107808|gb|EEY65860.1| replication factor C subunit 4 [Phytophthora infestans T30-4]
Length = 339
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 189/332 (56%), Gaps = 25/332 (7%)
Query: 1 MASSSSSSS----AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPG 56
M SS+S+S A +PWVEKYRP V +I VA L +G +P+L+ GPPG
Sbjct: 1 MFSSTSTSKTNVPAPVLPWVEKYRPKNVDEISHQEHVVATLKTSIANGQLPHLLFYGPPG 60
Query: 57 TGKTTSILALAHELLGPNYRE--AVMELNASDDRGIDVVRNKIKMFAQKKVT----LPPG 110
TGKT++I+A+ +L GP++R+ +ELNASDDRGI VVR K+K FAQ ++ LPP
Sbjct: 61 TGKTSTIVAVGRQLFGPDFRKNGRFLELNASDDRGIKVVREKVKSFAQGAISSASGLPP- 119
Query: 111 KHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRL 170
K++VLDEADSMT AQ ALRR ME YS TRF L CN S+IIEP+ SRCA RF+ L
Sbjct: 120 -FKIIVLDEADSMTGDAQSALRRMMENYSKVTRFCLICNYVSRIIEPVASRCAKFRFAPL 178
Query: 171 SDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENV 228
+ SR+ + EE+V LE+++ + GD+R+A+N LQ+ G ++Q++V
Sbjct: 179 EKISMASRVRFIASEERVDVSDSVLESLLECSTGDLRKAINYLQSAKQLCGDDELSQDDV 238
Query: 229 FKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEH 288
V P ++ +V F+ + ++ + GY + T+ R + + +A
Sbjct: 239 IAVAGLAPPELLQQFWVSVTSNSFEKMKTDIESILLAGYP----VLTILRQLNDDVLALD 294
Query: 289 LKLEFMKEAGF------AHMRICDGVGSYLQL 314
KL +++A A R+ DG + QL
Sbjct: 295 -KLNDVQKAQICLRIAGADKRLVDGASEHFQL 325
>gi|336121562|ref|YP_004576337.1| Replication factor C [Methanothermococcus okinawensis IH1]
gi|334856083|gb|AEH06559.1| Replication factor C [Methanothermococcus okinawensis IH1]
Length = 883
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 114/285 (40%), Positives = 173/285 (60%), Gaps = 13/285 (4%)
Query: 44 GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQK 103
GN+P ++ TT+ L LA +L G N+R+ +ELN+SD+RGIDV+R K+K FA+
Sbjct: 607 GNLPTVL-------HNTTAALCLARDLYGENWRDNFLELNSSDERGIDVIRTKVKDFART 659
Query: 104 KVTLPPGK--HKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSR 161
K P G K++ LDE+D++T+ AQ ALRRTME YS+ RF L+CN S+II PIQSR
Sbjct: 660 K---PIGDAPFKIIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSRIIPPIQSR 716
Query: 162 CAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFR 221
CAI RFS L E+I+ ++ + + E + G++AII+ ++GD+R+A+N LQ + +
Sbjct: 717 CAIFRFSPLKREDIIKKIKEIAENEGITIDESGIDAIIYVSEGDLRKAINVLQTAATVSK 776
Query: 222 FVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRII 280
+N E ++KV + P + M+ L KF +A L L D G S DI+ +FR I
Sbjct: 777 NINDEIIYKVSSKARPDEIIKMLELALNNKFIEARELLYNLMIDWGMSGEDILLQMFREI 836
Query: 281 KNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVR 325
N ++ E K+ ++ G RI +G +QL LLAK+ +++
Sbjct: 837 PNLDIEERKKVSLVEAIGECDFRIVEGANERIQLSALLAKIGMMK 881
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
PWVEKYRP + +I G+ + + RL + +MP+++ +GPPG GK
Sbjct: 4 PWVEKYRPKTLDEITGHDEIIKRLKSYVKKKSMPHMLFSGPPGVGK 49
>gi|366988801|ref|XP_003674168.1| hypothetical protein NCAS_0A12300 [Naumovozyma castellii CBS 4309]
gi|342300031|emb|CCC67788.1| hypothetical protein NCAS_0A12300 [Naumovozyma castellii CBS 4309]
Length = 350
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 127/336 (37%), Positives = 179/336 (53%), Gaps = 16/336 (4%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
S S PWVEKYRP ++ DI AV L + N+P+++ GPPGTGKT++IL
Sbjct: 15 SEEDSHQSKPWVEKYRPKQLDDIAAQGHAVTVLKKTLQSANLPHMLFYGPPGTGKTSTIL 74
Query: 65 ALAHELLGPNY-REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK---------HKV 114
ALA EL GP + ++ELNASD+RGI +VR K+K FA+ V+ P +K+
Sbjct: 75 ALAKELFGPELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKNDLENYPCPPYKI 134
Query: 115 VVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEE 174
++LDEADSMT+ AQ ALRRTME YS TRF L CN ++II+P+ SRC+ RF L
Sbjct: 135 IILDEADSMTSDAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKPLDATN 194
Query: 175 ILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT-----YSGFRFVNQENVF 229
+ RL V EE V Y + L+ I+ + GD+R+A+ LQ+ Y+G V +NV
Sbjct: 195 AIDRLRYVATEESVSYEDDVLKTILDISAGDLRRAITLLQSAAKRIQYTGAENVTSQNVK 254
Query: 230 KVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEH 288
++ +K +V V +D + + G+S +I L I N E
Sbjct: 255 ELAGVVPDDILKMIVEKVSNKNVNDIIEYVNEFTKSGWSGAAVIDQLHDYYISNDEYDTA 314
Query: 289 LKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324
K ++ +G +LQL LL K+S V
Sbjct: 315 FKNNVSMILFDTDAKLSNGTNEHLQLLNLLVKISQV 350
>gi|219117762|ref|XP_002179670.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408723|gb|EEC48656.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 338
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 186/327 (56%), Gaps = 7/327 (2%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
S + +PWVEKYRP ++ D+V D V+ + + N+P+L+L GPPGTGKT++I+
Sbjct: 9 SGRADELQLPWVEKYRPQRLEDLVSQDDIVSSITNLIDSENLPHLLLYGPPGTGKTSTIV 68
Query: 65 ALAHELLGPN--YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
A A + G + Y +ELNASD RGIDVVRN+IK FA K G K+++LDEAD+
Sbjct: 69 AAAKRMYGSSSAYSSMTLELNASDARGIDVVRNEIKEFAGTKQLFNKG-IKLIILDEADA 127
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT+ AQ ALRR +E Y+ + RF L CN SKII +QSRC RF+ LS ++I RL V
Sbjct: 128 MTSDAQFALRRIIEKYTKNARFCLVCNYVSKIIPALQSRCTRFRFAPLSRDQIEGRLTEV 187
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
+ EK +G++AI+ + GDMR+ LN LQ+T V++ +V+ P P +
Sbjct: 188 AEAEKCKTTQDGIDAILRLSGGDMRRVLNLLQSTAMSAEVVDETSVYLTSGAPLPADMDQ 247
Query: 243 MVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAH 301
++ ++ F AC + + + GY+ D++ L I E + + L + + G ++
Sbjct: 248 ILDWLMNHNFQTACEQITAMCTMKGYALADVLAELTSKIMCLENLDSVPLGMLLD-GMSN 306
Query: 302 M--RICDGVGSYLQLCGLLAKLSIVRE 326
+ R+ G +Q+ L+ RE
Sbjct: 307 VEHRLAFGPDEKIQIASLVGVFVRTRE 333
>gi|195473665|ref|XP_002089113.1| GE18941 [Drosophila yakuba]
gi|194175214|gb|EDW88825.1| GE18941 [Drosophila yakuba]
Length = 332
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 116/326 (35%), Positives = 186/326 (57%), Gaps = 4/326 (1%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
S ++ A +PWVEKYRP+ + D++ + + ++ + +P+L+ GPPGTGKT++I
Sbjct: 2 SETNGPAVRMPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTI 61
Query: 64 LALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
LA A +L P ++ V+ELNASDDRGI +VR +I FA + T+ K+++LDEAD+
Sbjct: 62 LACARQLYSPQQFKSMVLELNASDDRGIGIVRGQILNFASTR-TIFCDTFKLIILDEADA 120
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT AQ ALRR +E Y+++ RF + CN SKII +QSRC RF+ LS +++ RL +
Sbjct: 121 MTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQNQMMPRLEKI 180
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
++ E V +G A++ A GDMR+ LN LQ+T F VN++NV+ P ++
Sbjct: 181 IEAEAVQITDDGKRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNVYMCVGYPLRQDIEQ 240
Query: 243 MVRNVLEGK-FDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
+++ +L G +D+ ++ Y G + DIIT L + E+ + + + +
Sbjct: 241 ILKALLSGNSLEDSFKTVESAKYARGLALEDIITELHLFVMRLELPMSVMNKLIVKLAQI 300
Query: 301 HMRICDGVGSYLQLCGLLAKLSIVRE 326
R+ G Q L+A I R+
Sbjct: 301 EERLAKGCTEVAQTAALVAAFFICRD 326
>gi|359492415|ref|XP_003634411.1| PREDICTED: replication factor C subunit 4 [Vitis vinifera]
Length = 334
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 171/309 (55%), Gaps = 14/309 (4%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP +V D+ + V L N P+++ GPPGTGKTT+ LA+AH+L G
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLFG- 68
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGKHKVVVLDEADSMTAG 126
V+ELNASDDRGI+VVR KIK FA ++ P +K+++LDEADSMT
Sbjct: 69 -----VLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIIILDEADSMTED 123
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS+E + SR++ + +EE
Sbjct: 124 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKEE 183
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMVR 245
++ E L + + GD+R+A+ LQ F ++ +++ V V+ +
Sbjct: 184 ELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVVPQHVVQALFA 243
Query: 246 NVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
G FD A + + GY + ++ LF ++ ++++ K K A +
Sbjct: 244 ACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEADISDEQKARICKRLAEADKCLV 303
Query: 306 DGVGSYLQL 314
DG YLQL
Sbjct: 304 DGADEYLQL 312
>gi|159477557|ref|XP_001696875.1| DNA replication factor C complex subunit 5 [Chlamydomonas
reinhardtii]
gi|158274787|gb|EDP00567.1| DNA replication factor C complex subunit 5 [Chlamydomonas
reinhardtii]
Length = 356
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 118/323 (36%), Positives = 180/323 (55%), Gaps = 8/323 (2%)
Query: 12 DIPWVEKYRPTKVCDIVGN---LDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH 68
D PWVEKYRP K+ D+ + +D + RL + + +P+L+L GPPGTGKT++ILA+A
Sbjct: 35 DAPWVEKYRPKKLDDVAAHKEIIDTIKRLTV---ENRLPHLLLYGPPGTGKTSTILAVAR 91
Query: 69 ELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQ 128
++ G + +ELN+SD+RGI VVR +I+ FA + K K+++LDE D+MT AQ
Sbjct: 92 QIYGNSLANMTLELNSSDERGIGVVRQEIQDFASTRSVFS-NKFKLIILDECDAMTQDAQ 150
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKV 188
ALRR +E Y+ + RF L CN SKII +QSRC RF+ LS + + RL V EK+
Sbjct: 151 AALRRVIEKYTRNARFCLICNYVSKIIPALQSRCTKFRFAPLSPQFVRERLQYVADIEKM 210
Query: 189 PYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVL 248
P GL+A++ GDMR++LN LQ+ + F V+Q V+ P P ++ ++ +L
Sbjct: 211 KLGPGGLDAVVQLGSGDMRRSLNILQSCHMAFDTVDQSAVYTCTGNPLPADIERVLTWLL 270
Query: 249 EGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDG 307
+ + + + +L D G + DI+ L + + K+ ++ R+
Sbjct: 271 NDRVAEVFANILKLQVDKGIALVDIVRELHPFVMALSIPVPAKVALVERLADVEHRLAFS 330
Query: 308 VGSYLQLCGLLAKLSIVRETAKA 330
LQL L+A RET A
Sbjct: 331 TSEKLQLGALVAAFVRARETIAA 353
>gi|312069831|ref|XP_003137865.1| replication factor C subunit 3 [Loa loa]
gi|307766973|gb|EFO26207.1| replication factor C subunit 3 [Loa loa]
Length = 354
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 120/328 (36%), Positives = 199/328 (60%), Gaps = 18/328 (5%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + ++V + + L + + +P+L+ GPPGTGKT++ILA A +
Sbjct: 14 NMPWVEKYRPVSLTEVVSHGEITETLMKLINENRLPHLLFYGPPGTGKTSTILAAAKMMY 73
Query: 72 GPNYREA-VMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH-----KVVVLDEADSMTA 125
P + V+ELNASDDRGI +VR +I FAQ TL K+ K++VLDEAD+MT
Sbjct: 74 APKQLSSMVLELNASDDRGIGIVREQIINFAQTS-TLSMDKNQKSMPKLIVLDEADAMTK 132
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRR +E ++++ RF + CN SKII IQSRC +RF+ L +E+IL RL +VQ
Sbjct: 133 DAQSALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLPNEQILPRLHYIVQA 192
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E + +G A++ A+GDMR+ +N LQ+T F+ V++ +V++ P P V+ +VR
Sbjct: 193 ESLTITKDGQNALLNLAEGDMRRIINILQSTAMAFKTVDEWSVYQCVGYPLPNDVEKIVR 252
Query: 246 NVLEGKFDDACSGLKQLY-DLGYSPTDIITTL----FRIIKNYEMAEHL-----KLEFMK 295
+L +DA + ++++ + ++ +DI+ ++ FR++ E+ L +E+
Sbjct: 253 ILLNDSIEDAYTKIEEIRSERAFALSDILNSMHDFIFRLVIPPELLSRLLVCMADIEYHL 312
Query: 296 EAGFA-HMRICDGVGSYLQLCGLLAKLS 322
G + +++ +G+++ + LAKL+
Sbjct: 313 SQGCSDRLQLGALIGAFINIRSELAKLA 340
>gi|145350673|ref|XP_001419724.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579956|gb|ABO98017.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 342
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 176/313 (56%), Gaps = 7/313 (2%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP V D+ V L + GNMP+ + GPPGTGKTT+ LA+A EL GP
Sbjct: 17 PWVEKYRPRVVKDVASQEQIVGVLENALKTGNMPHCLFYGPPGTGKTTTALAIAKELYGP 76
Query: 74 N-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLP-PG----KHKVVVLDEADSMTAGA 127
Y++ V ELNASD+RGI VVRNKIK FA + V P PG +K+++LDEAD+MT A
Sbjct: 77 ELYKQRVKELNASDERGISVVRNKIKTFASQAVGAPAPGYPSPPYKILILDEADAMTGDA 136
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
Q ALRR ME YS TRF L CN +KII+PI SRCA RFS L+ E + +RL + ++E
Sbjct: 137 QSALRRMMETYSKVTRFFLLCNYVTKIIDPIASRCAKFRFSPLAQETMGARLKFIGEQEG 196
Query: 188 VPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRF-VNQENVFKVCDQPHPLHVKNMVRN 246
+ + + GDMR+A+ LQ+ F ++ ++ +V +K M
Sbjct: 197 LEMSDDVFAMCSKHSGGDMRKAITLLQSAARLFAGKISGASIVEVAGHIPDEKIKKMYDL 256
Query: 247 VLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICD 306
EGKF++A + ++ + G+S I+ + + ++ +K E + G +
Sbjct: 257 CREGKFEEAQAHMEDILRDGFSGLKILDQYSDYVLEADCSDEVKAEIFIKLGEVDRFLAQ 316
Query: 307 GVGSYLQLCGLLA 319
G +QL L++
Sbjct: 317 GADEGMQLATLVS 329
>gi|221059177|ref|XP_002260234.1| replication factor C3 [Plasmodium knowlesi strain H]
gi|193810307|emb|CAQ41501.1| replication factor C3, putative [Plasmodium knowlesi strain H]
Length = 344
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 172/312 (55%), Gaps = 6/312 (1%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + DI+ + ++ + + G +P+L+L GPPGTGKT++ILA+ EL G
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIQKFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGE 73
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKK---VTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGI VVR++IK FA+ K T K+++LDEAD MT AQ A
Sbjct: 74 SRSSFVLELNASDDRGISVVRDQIKTFAESKNHYNTCEKTALKLIILDEADHMTYPAQNA 133
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
+RR ME Y+ + RF L CN +KI IQSRC RFS L E ++++ + + + E V
Sbjct: 134 MRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMVNKALDIAKSENVEL 193
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFR--FVNQENVFKVCDQPHPLHVKNMVRNVL 248
+GL+++I GDMR+ LN LQ + ++Q + D P P VK ++ +
Sbjct: 194 TKDGLDSLIHVGRGDMRRILNCLQVVSLSHKNMTIDQNVILSTLDIPLPGEVKEILNHFT 253
Query: 249 EGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDG 307
+ ++ + +L GYS DI+ L+ I Y+ + +K G R G
Sbjct: 254 KSTMKESYEFVTKLQSTKGYSIKDIMVNLYESILTYDFPDSAMCLLLKNFGEIEERCSSG 313
Query: 308 VGSYLQLCGLLA 319
+ L L++
Sbjct: 314 ANEQITLSALIS 325
>gi|344231516|gb|EGV63398.1| hypothetical protein CANTEDRAFT_98513 [Candida tenuis ATCC 10573]
Length = 331
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 175/289 (60%), Gaps = 6/289 (2%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + ++ G + V + ++G +P+L+ GPPGTGKT++I+ALA E+
Sbjct: 7 NLPWVEKYRPETLDEVYGQSEIVDTVRKFVQEGKLPHLLFYGPPGTGKTSTIIALAREIY 66
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
GP Y+ V+ELNASDDRGIDVVRN+IK FA G K+++LDEAD+MT+ AQ AL
Sbjct: 67 GPKYKNMVLELNASDDRGIDVVRNQIKDFASTMQIFSKG-FKLIILDEADAMTSVAQNAL 125
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR +E Y+ +TRF + N S K+ + SRC RF + + I RL VV +EK+
Sbjct: 126 RRIIEKYTKNTRFCILANYSHKLNPALVSRCTRFRFQPIHTDAIRERLKNVVIKEKITIK 185
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRF----VNQENVFKVCDQPHPLHVKNMVRNV 247
P+ +E+++ + GDMR+ALN LQ+ + +++E ++ P P V+ ++ ++
Sbjct: 186 PDAIESLLTLSQGDMRRALNVLQSCKASLDNPDDEIDEEMIYNCIGAPQPKDVETVLDSI 245
Query: 248 LEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMK 295
L+ + A + + + G + D++ I+ YE+ + K++ +K
Sbjct: 246 LKDDWTTAYLTMDKFKRVKGLALIDLLEGFVGILNKYELDKQTKIKILK 294
>gi|116785245|gb|ABK23650.1| unknown [Picea sitchensis]
gi|224286688|gb|ACN41047.1| unknown [Picea sitchensis]
Length = 339
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 178/325 (54%), Gaps = 17/325 (5%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
MA SSS WVEKYRP +V D+ + V L GN+P+L+ GPPGTGKT
Sbjct: 1 MAPIHSSSQQ----WVEKYRPKQVKDVAHQEEVVRALTNTLETGNLPHLLFYGPPGTGKT 56
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKV---------TLPPGK 111
T+ LA+AH+L GP Y+ V+ELNASDDRGI+VVR KIK FA V PP
Sbjct: 57 TTALAIAHQLFGPEYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGNTNSGYLCPP-- 114
Query: 112 HKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLS 171
K+++LDEADSMT AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF L
Sbjct: 115 FKIIILDEADSMTEDAQNALRRTMETYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLV 174
Query: 172 DEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKV 231
++ + R++ + +EE V + L + ++GD+R+A+ LQ+ + N
Sbjct: 175 EDIMTGRILHICKEEGVHLDSDALTMLSSISEGDLRRAITYLQSAARLYGSSISSNNLIS 234
Query: 232 CDQPHPLH-VKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLF-RIIKNYEMAEHL 289
P V+++ + G+FD A + + G+ + I + L+ +++ ++++
Sbjct: 235 VSGIVPKEVVQSLYQACKTGQFDLAQKEVSDIIAEGHPASQIFSQLYDMVVQATDISDET 294
Query: 290 KLEFMKEAGFAHMRICDGVGSYLQL 314
K + A + DG YLQL
Sbjct: 295 KARISQRLAEADKCLIDGADEYLQL 319
>gi|448115886|ref|XP_004202928.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
gi|359383796|emb|CCE79712.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
Length = 331
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 176/289 (60%), Gaps = 6/289 (2%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP+ + ++ G D V+ + +G +P+L+ GPPGTGKT++I+ALA E+
Sbjct: 9 NLPWVEKYRPSSLDEVNGQNDIVSTVRKFVHEGKLPHLLFYGPPGTGKTSTIIALAKEIY 68
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G NYR V+ELNASDDRGIDVVRN+IK FA G K+++LDEAD+MT+ AQ +L
Sbjct: 69 GSNYRNMVLELNASDDRGIDVVRNQIKEFASTMQIFSKG-FKLIILDEADAMTSTAQNSL 127
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR +E Y+ +TRF + N + K+ + SRC RFS +S E + + + V+ +EK+
Sbjct: 128 RRIIEKYTKNTRFCILANYAHKLNPALVSRCTRFRFSPISQEAVNTTIATVITKEKLKIS 187
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQE----NVFKVCDQPHPLHVKNMVRNV 247
+ +E++ A GDMR+ALN LQA + + N E ++ HP ++ ++ ++
Sbjct: 188 SDAIESLCTLARGDMRKALNVLQACKASLQDDNDEIDTNMIYNCIGAAHPKDIEAVLDSI 247
Query: 248 LEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMK 295
L+ ++ + + + + G + D+++ I+ YE+ ++E ++
Sbjct: 248 LQDEWTSSYNTISICKREKGLALIDLLSGFVSILNKYELKPATRIEILR 296
>gi|66808355|ref|XP_637900.1| replication factor C subunit [Dictyostelium discoideum AX4]
gi|74853593|sp|Q54MD4.1|RFC4_DICDI RecName: Full=Probable replication factor C subunit 4; AltName:
Full=Activator 1 subunit 4
gi|60466332|gb|EAL64392.1| replication factor C subunit [Dictyostelium discoideum AX4]
Length = 347
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 178/317 (56%), Gaps = 16/317 (5%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWV KYRP V D+ D ++ L GN+P+L+ GPPGTGKT++ILA+A ++ GP
Sbjct: 11 PWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMDIYGP 70
Query: 74 NY-REAVMELNASDDRGIDVVRNKIKMFAQKKV-------TLPPGKHKVVVLDEADSMTA 125
++ V+ELNASD+RGI+VVR KIK FA V + P K+++LDEADSMT
Sbjct: 71 ELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEADSMTT 130
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRT+E S +TRF L CN S+II+P+ SRCA RF L + RL + Q+
Sbjct: 131 DAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKFISQQ 190
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRF----VNQENVFKVCDQPHPLHVK 241
E + +AI ++GDMR+A+ LQ S FRF ++++ ++ + P +K
Sbjct: 191 EGIKCEESVYQAIQVVSNGDMRKAITYLQ---SAFRFFANKISEDVIYNIAGSLPPQLIK 247
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLF-RIIKNYEMAEHLKLEFMKEAGFA 300
+V + FD S ++ + GY + +I+ LF ++ ++ + K + G
Sbjct: 248 QLVDCCKKNSFDRLQSMVQSIIAQGYPVSQVISQLFDYVLTTKDLNQSQKSHITMKIGNV 307
Query: 301 HMRICDGVGSYLQLCGL 317
+ DG +LQL L
Sbjct: 308 DRNLIDGSEEFLQLFDL 324
>gi|295658083|ref|XP_002789604.1| replication factor C subunit 3 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283157|gb|EEH38723.1| replication factor C subunit 3 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 404
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 120/334 (35%), Positives = 186/334 (55%), Gaps = 34/334 (10%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D+ G+ D + + +P+L+L GPPGTGKT++ILALA +
Sbjct: 44 NMPWVEKYRPNSLEDVSGHHDVIGTINTFIDSNRLPHLLLYGPPGTGKTSTILALARRIY 103
Query: 72 GP-NYREAVMELNASDDRGIDVVRNKIKMFAQKK--VTLPP--------GKHKVVVLDEA 120
G N R+ V+ELNASDDRGIDVVR++IK FA K ++ P G K+++LDEA
Sbjct: 104 GAKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSVAPVAKSESSLGAFKLIILDEA 163
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D+MTA AQ ALRR ME Y+ + RF + N + K+ + SRC RFS L +++I + +
Sbjct: 164 DAMTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRALVN 223
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSG-----------------FRFV 223
V+++E+V PE +++++ + GDMR+ALN LQA ++ V
Sbjct: 224 QVIEKEQVRIQPEAIDSLVELSKGDMRRALNVLQACHASSIPLPIKNAPKDQPTAEHETV 283
Query: 224 NQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDL----GYSPTDIITTLFRI 279
+QE ++ PHP +K ++ +L D S L + L G + DI+T L
Sbjct: 284 SQETIYTCIAAPHPADIKTIITALLTTS--DVTSCLNTIQSLKSNKGLALADILTALSAE 341
Query: 280 IKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
++ E+ ++ +M+ R+ G G +Q
Sbjct: 342 LQRIEVPAAARVVWMEGLADIEWRLASGGGEMVQ 375
>gi|260800650|ref|XP_002595211.1| hypothetical protein BRAFLDRAFT_284971 [Branchiostoma floridae]
gi|229280455|gb|EEN51223.1| hypothetical protein BRAFLDRAFT_284971 [Branchiostoma floridae]
Length = 364
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 126/330 (38%), Positives = 192/330 (58%), Gaps = 18/330 (5%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
SS + PWVEKYRP V D+ + VA L + ++PNL+L GPPGTGKT++I
Sbjct: 28 SSKERRQPNAPWVEKYRPRTVDDVAFQEEVVAVLKKSLQGADLPNLLLYGPPGTGKTSTI 87
Query: 64 LALAHELLGPNY-REAVMELNASDDRGIDVVRNKIKMFAQKKV--TLPPGK----HKVVV 116
LA A EL G + ++ V+ELNASD+RGI VVR+K+K F+Q T P G+ K+V+
Sbjct: 88 LAAARELFGADLMKQRVLELNASDERGIQVVRDKVKTFSQLSASGTRPDGRPCPPFKIVI 147
Query: 117 LDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEIL 176
LDEADSMT AQ +LRRTME + +TRF L CN S+IIEP+ SRCA RF LS + +
Sbjct: 148 LDEADSMTNPAQASLRRTMEKETKTTRFCLICNYISRIIEPLASRCAKFRFKPLSSDILQ 207
Query: 177 SRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY--SGFRFVNQENVFKVCDQ 234
RL + + EKV + + A+I T++GD+R+A+ LQ+ + G + ++++ ++
Sbjct: 208 KRLRHIAEAEKVNAEDKAITALIDTSEGDLRKAITYLQSAHRLKGEDAITEKDILEITG- 266
Query: 235 PHPLHVKNMVRNVLEGKFDDACSGL-KQLYDL---GYSPTDIITTLF-RIIKNYEMAEHL 289
+ K+MV +++ + D+ L K + DL GYS +I + ++ ++ +
Sbjct: 267 ---VIPKDMVSQLIQTCYSDSYEKLEKSVKDLKAEGYSAEQVILQIHDEVLPREDLTDKQ 323
Query: 290 KLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
K ++ R+ DG +LQL L +
Sbjct: 324 KSVIAEKIAVCDQRLADGGDEFLQLMDLTS 353
>gi|224060747|ref|XP_002196271.1| PREDICTED: replication factor C subunit 4 [Taeniopygia guttata]
Length = 362
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 185/330 (56%), Gaps = 14/330 (4%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS A IPWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 25 GSSGEGKRAKPIPWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 84
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP+ +R+ V+ELNASD+RGI V+R K+K FAQ + PP
Sbjct: 85 TILAAARELFGPDLFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRSDGKMCPP--F 142
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD
Sbjct: 143 KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSD 202
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS--GFRFVNQENVFK 230
RL+ V ++E V E + ++ ++GD+R+A+ LQ+ G + + ++ + +
Sbjct: 203 SIQQQRLLDVSEKEHVKISNEAISYLVKVSEGDLRKAITFLQSATRLMGGKEITEKIITE 262
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLF-RIIKNYEMAEHL 289
+ + ++ G F+ + K L + G++ ++ L I+++ + ++
Sbjct: 263 IAGVIPKETIDELLLGCQSGSFEKLETLAKNLINEGFAVAQLVNQLHDTIVESEDYSDKQ 322
Query: 290 KLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
K +++ + DG +LQL L A
Sbjct: 323 KSAIVEKLAEVDKCLADGADEFLQLMSLCA 352
>gi|195111460|ref|XP_002000296.1| GI10150 [Drosophila mojavensis]
gi|193916890|gb|EDW15757.1| GI10150 [Drosophila mojavensis]
Length = 354
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 120/314 (38%), Positives = 181/314 (57%), Gaps = 10/314 (3%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP V D+V + VA L ++PN++L GPPGTGKT++ILA A ++ G
Sbjct: 32 PWVEKYRPRSVEDVVEQSEVVAVLRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFGD 91
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVT--LPPGK----HKVVVLDEADSMTAGA 127
YR+ ++ELNASD+RGI+VVR KIK FAQ + P G+ K++VLDEADSMT A
Sbjct: 92 MYRDRILELNASDERGINVVRTKIKNFAQLTASNVRPDGRPCPPFKIIVLDEADSMTHAA 151
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
Q ALRRTME S STRF L CN S+II PI SRC+ RF L + +I++RL + +E
Sbjct: 152 QAALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGETQIIARLKHICMQEN 211
Query: 188 VPYVPEGLEAIIFTADGDMRQALNNLQATY---SGFRFVNQENVFKVCDQPHPLHVKNMV 244
V P+ ++I+ + GDMR+A+ LQ+ Y +N +++ ++ ++++ +
Sbjct: 212 VNIDPDAYKSIVKISGGDMRRAITTLQSCYRLKGSDHTINTDDLLEMSGIIPEHYLEDYL 271
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFMKEAGFAHMR 303
GK++ ++++ YS ++ I++ + + K + G R
Sbjct: 272 EVCRSGKYERLEHFVREIGYSAYSVGQMMEQFVEFIVRCGSLTDKQKAIICDKLGECCYR 331
Query: 304 ICDGVGSYLQLCGL 317
+ DG YLQ+ L
Sbjct: 332 LQDGGSEYLQIMDL 345
>gi|115496354|ref|NP_001068826.1| replication factor C subunit 5 [Bos taurus]
gi|79160183|gb|AAI08106.1| Replication factor C (activator 1) 5, 36.5kDa [Bos taurus]
gi|296478479|tpg|DAA20594.1| TPA: replication factor C 5 [Bos taurus]
Length = 316
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 114/267 (42%), Positives = 164/267 (61%), Gaps = 3/267 (1%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA A +L
Sbjct: 18 NLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLY 77
Query: 72 -GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT AQ A
Sbjct: 78 KDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNA 136
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+EEKV
Sbjct: 137 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDI 196
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G++A+I + GDMR+ALN LQ+T F V +E V+ P + N++ +L
Sbjct: 197 SEDGMKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQ 256
Query: 251 KFDDACSGLKQLYDL-GYSPTDIITTL 276
F A + +L L G + DI+T +
Sbjct: 257 DFTTAYRNIMELKTLKGLALHDILTEI 283
>gi|357160682|ref|XP_003578842.1| PREDICTED: replication factor C subunit 4-like [Brachypodium
distachyon]
Length = 339
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 184/327 (56%), Gaps = 15/327 (4%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP +V D+ + V L + ++P+++ GPPGTGKTT+ LA+A++L GP
Sbjct: 10 PWVEKYRPRQVKDVAHQEEVVRVLTNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGP 69
Query: 74 N-YREAVMELNASDDRGIDVVRNKIKMFAQ------KKVTLPPGKHKVVVLDEADSMTAG 126
Y+ V+ELNASD+RGI+VVR KIK FA +K P +K+++LDEADSMT
Sbjct: 70 ELYKSRVLELNASDERGINVVRTKIKDFAAVAVGTARKGGYPCPPYKIIILDEADSMTED 129
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS++ + +R++ + EE
Sbjct: 130 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMTNRILHICHEE 189
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMVR 245
+ + L + GD+R+A+ LQ+ F ++ ++ V VK+++
Sbjct: 190 GLTLDAQALSTLSAICQGDLRRAITYLQSAARLFGSSISSTDLISVSGAIPEDIVKSLLG 249
Query: 246 NVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRI 304
G+FD A + + GY + +++ +I N ++ + K K+ G A +
Sbjct: 250 ACKSGEFDVANKEVSSIIADGYPVSQLLSQFLDVIVNADDIPDEQKARICKKLGEADKCL 309
Query: 305 CDGVGSYLQLCGLLAKLSIVRETAKAV 331
DG YLQL L + ET +A+
Sbjct: 310 VDGADEYLQL------LDMASETIRAL 330
>gi|426247314|ref|XP_004017431.1| PREDICTED: replication factor C subunit 5 isoform 2 [Ovis aries]
Length = 316
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 114/267 (42%), Positives = 164/267 (61%), Gaps = 3/267 (1%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA A +L
Sbjct: 18 NLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLY 77
Query: 72 -GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT AQ A
Sbjct: 78 KDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNA 136
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+EEKV
Sbjct: 137 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDI 196
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G++A+I + GDMR+ALN LQ+T F V +E V+ P + N++ +L
Sbjct: 197 SEDGMKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQ 256
Query: 251 KFDDACSGLKQLYDL-GYSPTDIITTL 276
F A + +L L G + DI+T +
Sbjct: 257 DFTTAYRNIMELKTLKGLALHDILTEI 283
>gi|449449767|ref|XP_004142636.1| PREDICTED: replication factor C subunit 4-like [Cucumis sativus]
Length = 336
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 121/317 (38%), Positives = 177/317 (55%), Gaps = 10/317 (3%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP +V D+ + V L N P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 74 N-YREAVMELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGKHKVVVLDEADSMTA 125
Y+ V+ELNASDDRGI+VVR KIK FA Q++ P K+++LDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTE 129
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME +S TRF CN S+IIEP+ SRCA RF LS+E + R++ + E
Sbjct: 130 DAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHIGNE 189
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMV 244
E + E L + + GD+R+A+ LQ+ F ++ +++ V V +
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGIIPQEVVDALF 249
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFMKEAGFAHMR 303
G FD A + + GY +++ +F +I++ ++ + K K+ A
Sbjct: 250 VACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARICKKLAEADKC 309
Query: 304 ICDGVGSYLQLCGLLAK 320
+ DG YLQL ++++
Sbjct: 310 LVDGADEYLQLLDVVSQ 326
>gi|315049065|ref|XP_003173907.1| replication factor C protein subunit 3 [Arthroderma gypseum CBS
118893]
gi|311341874|gb|EFR01077.1| replication factor C protein subunit 3 [Arthroderma gypseum CBS
118893]
Length = 397
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 116/336 (34%), Positives = 187/336 (55%), Gaps = 28/336 (8%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D+ G+ D +A + +P+L+L GPPGTGKT++ILALA +
Sbjct: 44 NLPWVEKYRPDTLDDVSGHQDIIATINRFVESNRLPHLLLYGPPGTGKTSTILALARRIY 103
Query: 72 GP-NYREAVMELNASDDRGIDVVRNKIKMFAQKK---VTLPP-----GKHKVVVLDEADS 122
G N R+ V+ELNASDDRGIDVVR +IK FA K T P G K+++LDEAD+
Sbjct: 104 GSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADA 163
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT+ AQ ALRR ME Y+ +TRF + N + K+ + SRC RFS L +++I + V
Sbjct: 164 MTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIKRLVDTV 223
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-----------------RFVNQ 225
+++E+V P+ +++++ + GDMR+ALN LQA ++ + +
Sbjct: 224 IEKEQVQIQPDAIDSLVKLSKGDMRRALNVLQACHASSMPLPSKKGDTSEQPQDRETITE 283
Query: 226 ENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLY--DLGYSPTDIITTLFRIIKNY 283
E ++ PHP +K ++ +L +C Q + G + DII+ L +++
Sbjct: 284 ETIYTCIAAPHPADIKMILETLLSTSDVTSCLNTVQTLKSNKGLALADIISALSTELQSL 343
Query: 284 EMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
E+ +++ +++ R+ G +Q G++
Sbjct: 344 EVPAQVRVSWIEGLADVEWRLSGGGSESIQTGGMIG 379
>gi|124801405|ref|XP_001349685.1| replication factor C, subunit 2 [Plasmodium falciparum 3D7]
gi|3845290|gb|AAC71957.1| replication factor C, subunit 2 [Plasmodium falciparum 3D7]
Length = 330
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 135/326 (41%), Positives = 178/326 (54%), Gaps = 35/326 (10%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
+IPWVEKYRP ++ DIV +AV L + R NMP+LI GPPGTGKT++I ALAHEL
Sbjct: 3 NIPWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELF 62
Query: 72 GP-NYREAVMELNASDDRGIDVVRNKIKMF-----------AQKKVTLPPGKHKVVVLDE 119
G N E V+ELNASDDRGI+VVR KIK + ++ K LP K +VVLDE
Sbjct: 63 GKENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWK--LVVLDE 120
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
AD MT AQ ALRR +EIYSN TRF L CN KI +PI SRC+ RF + +L
Sbjct: 121 ADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKL 180
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH 239
+ + Q E + V + LE II T +GD+R+A++ LQ + +V V P
Sbjct: 181 LYICQNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCINTKITLNSVLDVSGLPS--- 237
Query: 240 VKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDII------TTLFRIIKNY-----EMAEH 288
N+V ++ DAC +K L + + DII +F+ NY E +
Sbjct: 238 -DNIVYKII-----DACK-MKDLKLVEKTVQDIIEDGFDVAYIFKSFNNYFVTNTEYEDS 290
Query: 289 LKLEFMKEAGFAHMRICDGVGSYLQL 314
LK + + E R+ G Y+QL
Sbjct: 291 LKYQILLELSRHDYRLHCGATQYIQL 316
>gi|340056431|emb|CCC50763.1| putative replication factor C, subunit 3 [Trypanosoma vivax Y486]
Length = 374
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 114/328 (34%), Positives = 180/328 (54%), Gaps = 8/328 (2%)
Query: 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
+S +PWVEKYRP+ + ++V + + ++ + G+MP+ + GPPGTGKTT++ A
Sbjct: 32 TSRTGSLPWVEKYRPSTLDEVVAHEEILSTTRRLIDSGSMPHFLFYGPPGTGKTTTVKAC 91
Query: 67 AHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTL------PPGKHKVVVLDE 119
AH L G R V+E+NASDDRGIDVVR +++ FA P K+V+LDE
Sbjct: 92 AHYLFGKERVRANVLEMNASDDRGIDVVRQQVREFASTSSIFCTNSSNPVSSFKLVILDE 151
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
AD M+ AQ ALRR +E Y+ + RF + CN +KII +QSRC RF+ + +L RL
Sbjct: 152 ADQMSGDAQAALRRIIEKYTKNVRFCIICNRINKIIPALQSRCTRFRFAPVKKGAMLPRL 211
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH 239
VVQEE V + EGL A +GDMR+ LN +Q++ V +E+V++ P P
Sbjct: 212 KFVVQEEGVRFTEEGLAAAFRLCNGDMRRCLNIMQSSAMSAGEVTEESVYRTTGNPTPAE 271
Query: 240 VKNMVRNVLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAG 298
V+ +V ++L + + ++Q + + G S TD++ + I+ ++ K + +
Sbjct: 272 VRGIVEDMLAHDYALSWEKMQQAVIEKGVSATDLVREVHHIVMAMDLPVDCKCFLLTKLA 331
Query: 299 FAHMRICDGVGSYLQLCGLLAKLSIVRE 326
G + + G+L +V+E
Sbjct: 332 DVEYYAASGTRESINIGGVLGAFQLVKE 359
>gi|195434144|ref|XP_002065063.1| GK15259 [Drosophila willistoni]
gi|194161148|gb|EDW76049.1| GK15259 [Drosophila willistoni]
Length = 331
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 183/327 (55%), Gaps = 8/327 (2%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
S + A IPWVEKYRP + D++ + + V+ + +P+L+ GPPGTGKT++IL
Sbjct: 2 SDNGPAIRIPWVEKYRPNNLEDLISHEEIVSTINRFIGQKQLPHLLFYGPPGTGKTSTIL 61
Query: 65 ALAHELLGP-NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM 123
A A +L P ++ V+ELNASDDRGI +VR +I FA + T+ G K+++LDEAD+M
Sbjct: 62 ACARQLYTPAQFKSMVLELNASDDRGIGIVRGQILNFASTR-TIFCGTFKLIILDEADAM 120
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T AQ ALRR +E Y+ + RF + CN SKII +QSRC RF+ LS E++L RL +V
Sbjct: 121 TNDAQNALRRIIEKYTENVRFCVICNYLSKIIPALQSRCTRFRFAPLSPEQMLPRLDKIV 180
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
+ E V +G +A++ A GDMR+ LN LQ+T F VN+ NV+ P + +
Sbjct: 181 EAEAVTITDDGKKALLTLAKGDMRKVLNVLQSTVMAFNEVNENNVYMCVGYPLKQDTEQI 240
Query: 244 VRNVLEGKFDDACSGLKQLYDL----GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGF 299
+ +L G+ A K + D G + DI+T L + E+ + + + +
Sbjct: 241 LNALLSGESFKA--AFKTIEDAKSRRGLALEDILTELHLFVMRLELPMSVMNKLIIKLAQ 298
Query: 300 AHMRICDGVGSYLQLCGLLAKLSIVRE 326
R+ G Q+ L++ I R+
Sbjct: 299 IEERLSKGCTEGAQIAALVSAFFICRD 325
>gi|448401395|ref|ZP_21571631.1| Replication factor C small subunit [Haloterrigena limicola JCM 13563]
gi|445666658|gb|ELZ19317.1| Replication factor C small subunit [Haloterrigena limicola JCM 13563]
Length = 1032
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 107/265 (40%), Positives = 165/265 (62%), Gaps = 3/265 (1%)
Query: 60 TTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDE 119
TT+ A+A E+ ++RE +ELNASD RGIDVVR++IK FA+ + H+++ LDE
Sbjct: 766 TTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFARS--SFGGYDHRIIFLDE 823
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
AD++T+ AQ ALRRTME +SN+TRF L+CN SS+II+PIQSRCA+ RF+ L ++ I +++
Sbjct: 824 ADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELGEDAIEAQV 883
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH 239
+ E + +G++A+++ ADGDMR+A+N LQA V++E VF + P
Sbjct: 884 REIAATEDIAVTDDGVDALVYAADGDMRKAINALQAAAVMGETVDEETVFAITATARPEE 943
Query: 240 VKNMVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAG 298
V+ MV + G F A + L++L D G + D+I L R +++ E + ++ G
Sbjct: 944 VEAMVEYAIGGDFTAARAALEELLTDRGLAGGDVIDQLHRSAWEFDIPEQATVRLLERLG 1003
Query: 299 FAHMRICDGVGSYLQLCGLLAKLSI 323
RI +G LQL +LA L++
Sbjct: 1004 EVDYRITEGANERLQLEAMLASLAL 1028
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK--TTSILALAHELLG 72
W+EKYRP ++ +I G+ + V RL ++P+L+ AGP GTGK T L +E +
Sbjct: 21 WIEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGTGKCVTGETPVLTNEGVA 80
Query: 73 P 73
P
Sbjct: 81 P 81
>gi|308479944|ref|XP_003102180.1| hypothetical protein CRE_06764 [Caenorhabditis remanei]
gi|308262335|gb|EFP06288.1| hypothetical protein CRE_06764 [Caenorhabditis remanei]
Length = 365
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 178/321 (55%), Gaps = 12/321 (3%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
S+ + ++PWVEKYRP+K+ ++V + V L + +P+L+ GPPGTGKTT++L
Sbjct: 3 STPAVVSNLPWVEKYRPSKLDELVAHEQVVKTLTKFIENRTLPHLLFYGPPGTGKTTTVL 62
Query: 65 ALAHELLGP-NYREAVMELNASDDRGIDVVRNKIKMFAQKK-----VTLPPGKH---KVV 115
A A ++ P V+ELNASD+RGIDVVRN I FAQ K T K+V
Sbjct: 63 AAARKMYSPARMSSMVLELNASDERGIDVVRNTIVNFAQTKGLQSYATASSSDQVPFKMV 122
Query: 116 VLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEI 175
+LDEAD+MT AQ ALRR +E Y+++ RF + CN + II IQSRC RF+ L + I
Sbjct: 123 ILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAPLDQKLI 182
Query: 176 LSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQP 235
+ RL +V E + +G +A++ ++GDMR +N LQ+T F V++ V++ QP
Sbjct: 183 VPRLDFIVNSENIKMTSDGRQALLTVSNGDMRTVINTLQSTAMSFDTVSESTVYQCIGQP 242
Query: 236 HPLHVKNMVRNVLEGKFDDACSGL--KQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEF 293
P +K +V ++L C L +L+D GY+ D+IT L + ++ +
Sbjct: 243 TPKEMKQVV-SILLNDSAKTCMNLIKTKLFDNGYALQDVITHLHDWVFTLDIPDEAMSAI 301
Query: 294 MKEAGFAHMRICDGVGSYLQL 314
+ G + G + QL
Sbjct: 302 VTGLGEVEQNLASGCSNETQL 322
>gi|403224069|dbj|BAM42199.1| replication factor C subunit [Theileria orientalis strain Shintoku]
Length = 347
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 177/333 (53%), Gaps = 15/333 (4%)
Query: 8 SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
S+A PWVEKYRP DI+ + D ++ L + A G +P+L+ GPPG GKT++I+A+A
Sbjct: 2 STALGAPWVEKYRPETFQDIISHEDIMSTLMVFAEKGQLPHLLFHGPPGAGKTSTIMAIA 61
Query: 68 HELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTL---------PPGKHKVVVLD 118
L G V+ELNASD+RGID VR +IK F++ T P K+++LD
Sbjct: 62 RYLYGSQRNGFVLELNASDERGIDTVREQIKSFSETSNTFSSTSANEDPPRTTLKLIILD 121
Query: 119 EADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSR 178
EAD MT AQ ALRR MEIYSN+ RF L CN +KII PIQSRC RF L E + +
Sbjct: 122 EADQMTNAAQNALRRIMEIYSNNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKPELVRQK 181
Query: 179 LMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFR-----FVNQENVFKVCD 233
+ + EKV L+ ++ GDMR+ LN LQ T + ++ +
Sbjct: 182 IKDIAAIEKVSVSECALDTLVDIGQGDMRRVLNCLQVTAMSYAKGSDVVIDSNLILATSG 241
Query: 234 QPHPLHVKNMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLE 292
P L + ++++++++ F + L +L+ GYS D++ +++ + + ++
Sbjct: 242 LPKTLEIDHLLQSLMQNSFKECVDELNELHHTKGYSVEDLVRGVYKAVLKIDWPNVPVIQ 301
Query: 293 FMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVR 325
+ R+ G + +Q+ L++ + R
Sbjct: 302 LLIRLADIEERLSSGANTSIQIAALVSSFAEAR 334
>gi|50304409|ref|XP_452154.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641286|emb|CAH02547.1| KLLA0B13992p [Kluyveromyces lactis]
Length = 352
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 125/333 (37%), Positives = 180/333 (54%), Gaps = 31/333 (9%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP K+ D+ AV L + N+P+++ GPPGTGKT++ILAL EL GP
Sbjct: 23 PWVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTILALTKELYGP 82
Query: 74 NYREA-VMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK---------HKVVVLDEADSM 123
+ + V+ELNASD+RGI +VR K+K FA+ V+ P +K+++LDEADSM
Sbjct: 83 HLSNSRVLELNASDERGISIVREKVKNFARLTVSKPSESDLANYPCPPYKIIILDEADSM 142
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
TA AQ ALRRTME YS TRF L CN ++II+P+ SRC+ RF L LSRL +
Sbjct: 143 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSSNALSRLQFIA 202
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
EE + Y LE I+ + GD+R+A+ LQ S + V Q + H +
Sbjct: 203 NEESLKYEDGVLERILDISQGDLRKAITLLQ---SAAKIVLQNDDANTITLKHANELSGT 259
Query: 244 VR--------NVLEGK-FDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEF 293
+ NV++GK + +++ + G+S +T L IKN E EF
Sbjct: 260 IHEEILQDLINVIKGKDLNKIIDKVQEFVNQGWSAASALTQLHEYYIKN----ESYDTEF 315
Query: 294 MKEAGF----AHMRICDGVGSYLQLCGLLAKLS 322
+ + + ++ +G +LQ+ L K+S
Sbjct: 316 KNKVSWLLFDSDSKLTNGASEHLQMLNLAMKVS 348
>gi|71413122|ref|XP_808715.1| replication factor C, subunit 3 [Trypanosoma cruzi strain CL
Brener]
gi|70872975|gb|EAN86864.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 114/334 (34%), Positives = 186/334 (55%), Gaps = 10/334 (2%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
S+ ++ + +PWVEKYRP + ++V + D ++ + GN+P+L+ GPPGTGKTT+
Sbjct: 8 STGHAAKSSTLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTT 67
Query: 63 ILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKK----VTLPPG----KHK 113
I A A+ L G + R V+E+NASDDRGIDVVR +++ F+ + P K
Sbjct: 68 IKACAYYLFGKDRIRANVLEMNASDDRGIDVVRQQVREFSSTSSFYFASAPAAPTIAAFK 127
Query: 114 VVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDE 173
+V+LDEAD M+ AQ ALRR +E Y+ + RF + CN +KII +QSRC RF+ +
Sbjct: 128 LVILDEADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVKKS 187
Query: 174 EILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCD 233
+L RL V QEE V + EGL A ++GD+R+ LN +QA+ + +E+V++V
Sbjct: 188 AMLPRLKFVAQEEGVRFTDEGLVAAFRLSNGDLRRCLNTMQASAMSAGEITEESVYRVTG 247
Query: 234 QPHPLHVKNMVRNVLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYEMAEHLKLE 292
P P V+ +V +++ F + ++Q + + G S TD++ + I+ ++ + K
Sbjct: 248 NPTPADVRGIVEDMIAHDFAASWEKVQQTVSEKGVSSTDLVREVHHIVMAMDLPQESKCF 307
Query: 293 FMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRE 326
+ + G + G+L +V+E
Sbjct: 308 LLMKLADVEYYAAGGAKETTCISGILGAFQLVKE 341
>gi|171186449|ref|YP_001795368.1| replication factor C small subunit [Pyrobaculum neutrophilum
V24Sta]
gi|170935661|gb|ACB40922.1| Replication factor C [Pyrobaculum neutrophilum V24Sta]
Length = 328
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 175/316 (55%), Gaps = 3/316 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W EKYRP ++V + +RL R GNMP+L+ GPPGTGKTT L LA EL G
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+RE +ELNASD+RGI+V+R ++K FA+ P K+V+LDEAD+MT+ AQQALRR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPIKAP--FKLVILDEADNMTSDAQQALRRI 123
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
MEIY+ +TRF L N S+II+PI SRCA+ RFS + + RL + + E + +
Sbjct: 124 MEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKYIAKREGIEVGEDA 183
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
L+ I ++GDMR+A+N LQ + + V+ V P + + L G +
Sbjct: 184 LDLIYELSEGDMRKAINLLQVAAATNKVVDANAVAAAAAAVKPSDILELFNLALGGDYLK 243
Query: 255 ACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A L++L Y G + D I R + + + LK E + R+ G +Q
Sbjct: 244 AREKLRELMYIKGVAGVDFIRAFQRELIRMPLDDDLKAEIAELLADVDYRLTQGADEEIQ 303
Query: 314 LCGLLAKLSIVRETAK 329
+ LLAKL + + AK
Sbjct: 304 MAYLLAKLGSIGKRAK 319
>gi|363540406|ref|YP_004894549.1| mg498 gene product [Megavirus chiliensis]
gi|350611571|gb|AEQ33015.1| putative replication factor C small subunit [Megavirus chiliensis]
gi|371943815|gb|AEX61643.1| putative replication factor C small subunit [Megavirus courdo7]
gi|425701391|gb|AFX92553.1| putative replication factor C small subunit [Megavirus courdo11]
Length = 325
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 102/319 (31%), Positives = 186/319 (58%), Gaps = 4/319 (1%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
IPW+EKYRP+ + +I+ +++ ++ I D + +LI GPPG GKT++ +A +LG
Sbjct: 9 IPWIEKYRPSTIDEIIFDVNIRKQINIFLEDKDNVHLIFTGPPGIGKTSTARCIAKTMLG 68
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+ +E+NA++DRG+ + N+I F +K V K+++LDEAD MT+ Q +
Sbjct: 69 NHMNTGYLEINAAEDRGVRSMSNRIPPFCKKVVDF--NMSKIILLDEADIMTSKCQFDIN 126
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
++ + T+F CN S+KIIE +QS C I+RF +L++++I S L + +E V +
Sbjct: 127 NMIKEFGKRTKFIFTCNDSTKIIEDLQSVCRILRFKKLTNQQICSYLSKICDKENVEFDK 186
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
GLE I + + GDMR+++N+LQ T ++ + ++ V K+C P P +K ++ L+G
Sbjct: 187 PGLETICYISYGDMRKSINDLQKTAFTYQKITKKTVLKICRVPDPEEIKKIIELCLQGDL 246
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
+A + + + L Y DI+++ ++ +Y++ +KL+ + + + G+ S L
Sbjct: 247 INADAEMNSIIKLDYCYFDIVSSFVFVLTSYDLEHSIKLKLIDIVNKTKINVSKGLHSKL 306
Query: 313 QLCGLLAKLSIVRETAKAV 331
QL G+L + I+RE + +
Sbjct: 307 QLSGMLCR--IIREYSTYI 323
>gi|299117347|emb|CBN75303.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 354
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 129/319 (40%), Positives = 180/319 (56%), Gaps = 19/319 (5%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARL--GIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
PWVEKYRP K D V + D V G IA G +P+L+ GPPGTGKT++ LALA L
Sbjct: 29 PWVEKYRP-KTVDDVAHQDEVTNTLKGAIAT-GVLPHLLFYGPPGTGKTSTALALARTLF 86
Query: 72 GPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT-------LPPGKHKVVVLDEADSM 123
GP+ YR+ ++ELNASD+RGI VVR KIK FAQ V P KV++LDEAD+M
Sbjct: 87 GPDTYRDRILELNASDERGIKVVREKIKTFAQVAVGRATHQAGYPCPPFKVIILDEADTM 146
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T AQ ALRRTME YS TRF L CN ++IIEP+ SRCA RFS L +L RL +
Sbjct: 147 TPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYIS 206
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT---YSGFRFVNQENVFKVCDQPHPLHV 240
+EE V +GL+AI+ + GDMR+A+ +Q+ Y+G V E + + + P V
Sbjct: 207 REEDVKIAADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAE-VTPEVLVDIAGK-IPAEV 264
Query: 241 KNMVRNVLE-GKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFMKEAG 298
K + + ++ G ++ + + GY + ++ + + + + +H K + +
Sbjct: 265 KEALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIA 324
Query: 299 FAHMRICDGVGSYLQLCGL 317
A + DG LQL L
Sbjct: 325 EADRCLIDGCNEELQLLDL 343
>gi|348688417|gb|EGZ28231.1| hypothetical protein PHYSODRAFT_551952 [Phytophthora sojae]
Length = 339
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 187/327 (57%), Gaps = 21/327 (6%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
++S ++ A +PWVEKYRP V +I VA L +G +P+L+ GPPGTGKT+
Sbjct: 6 STSKTNLPAPVLPWVEKYRPKNVDEISHQEHVVATLKTSIANGQLPHLLFYGPPGTGKTS 65
Query: 62 SILALAHELLGPNYRE--AVMELNASDDRGIDVVRNKIKMFAQKKVT----LPPGKHKVV 115
+I+A+ +L GP++R+ +ELNASDDRGI VVR K+K FAQ ++ LPP K++
Sbjct: 66 TIVAVGRQLFGPDFRKNGRFLELNASDDRGIKVVREKVKSFAQGAISSASGLPP--FKII 123
Query: 116 VLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEI 175
VLDEADSMT AQ ALRR ME YS TRF L CN S+IIEP+ SRCA RF+ L +
Sbjct: 124 VLDEADSMTGDAQSALRRMMENYSKVTRFCLICNYVSRIIEPVASRCAKFRFAPLERGSM 183
Query: 176 LSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS--GFRFVNQENVFKVCD 233
SR+ + EE V LE+++ ++GD+R+A+N LQ+ G ++Q++V V
Sbjct: 184 ASRVRFIASEEHVNVPDPVLESLLECSNGDLRKAINYLQSAKQLCGDDELSQDDVIAVAG 243
Query: 234 QPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEF 293
P +K +V F+ + ++ + GY + T+ R + + +A KL
Sbjct: 244 LAPPELLKQFWVSVASNSFEKMKTDIESILLAGYP----VLTILRQLNDDVLALD-KLND 298
Query: 294 MKEAGF------AHMRICDGVGSYLQL 314
+++A A R+ DG + QL
Sbjct: 299 VQKAKISLRIAEADKRLVDGASEHFQL 325
>gi|390371040|dbj|GAB64921.1| replication factor C subunit 2 [Plasmodium cynomolgi strain B]
Length = 342
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 179/326 (54%), Gaps = 35/326 (10%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP K+ DIV +AV+ L + R NMP+LI GPPGTGKT++I ALAHEL
Sbjct: 15 NLPWVEKYRPKKLDDIVHQTNAVSMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELF 74
Query: 72 G-PNYREAVMELNASDDRGIDVVRNKIKMFAQKKV-----------TLPPGKHKVVVLDE 119
G N E V+ELNASDDRGI+VVR KIK + + + TLPP K +VVLDE
Sbjct: 75 GRDNISERVLELNASDDRGINVVREKIKAYTRISISKNKINSETNETLPPWK--LVVLDE 132
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
AD MT AQ ALRR +EIYSN TRF L CN KI +PI SRC+ RF + +L
Sbjct: 133 ADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPINIKKEKL 192
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH 239
+ + + E + + + L II T GD+R+A++ LQ + E+V V P
Sbjct: 193 LYICKSEGINILDDALGKIIETTQGDLRRAVSILQLCSCIDPMITLESVLDVSGLP---- 248
Query: 240 VKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDII------TTLFRIIKNY-----EMAEH 288
+ + K DAC +K L ++ + DII +F+ + NY E +
Sbjct: 249 -----ADDIISKIIDACK-MKDLKNVEKAVQDIIEDGYDVAYIFKSLNNYFVMNTEYQDS 302
Query: 289 LKLEFMKEAGFAHMRICDGVGSYLQL 314
+K + + E R+ G Y+QL
Sbjct: 303 VKSQILLELSRHDYRLHSGATKYIQL 328
>gi|363750506|ref|XP_003645470.1| hypothetical protein Ecym_3150 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889104|gb|AET38653.1| Hypothetical protein Ecym_3150 [Eremothecium cymbalariae
DBVPG#7215]
Length = 350
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 118/328 (35%), Positives = 175/328 (53%), Gaps = 22/328 (6%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP K+ D+ V L N+P+++ GPPGTGKT++ILAL EL GP
Sbjct: 24 PWVEKYRPKKLEDVTAQSHTVKVLKKTLESANLPHMLFYGPPGTGKTSTILALTKELFGP 83
Query: 74 NY-REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK---------HKVVVLDEADSM 123
+ V+ELNASD+RGI +VR K+K FA+ VT P + +K+++LDEADSM
Sbjct: 84 ELMKTRVLELNASDERGISIVREKVKNFARLTVTTPSKEDLERHPCPPYKIIILDEADSM 143
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
TA AQ ALRRTME YSN TRF L CN ++II+P+ SRC+ RF L + L+RL +
Sbjct: 144 TADAQSALRRTMETYSNVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNSNALTRLQYIA 203
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQ--------ENVFKVCDQP 235
EE + L+ I+ ++GD+R+ + LQ+ +++ E + V +P
Sbjct: 204 SEESLTLADGALDKILDISEGDLRKGITLLQSVAKAVAYLDNAEITTSQVEELAGVVPEP 263
Query: 236 HPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLF-RIIKNYEMAEHLKLEFM 294
L + N + + + + + G+ +I+ L +KN E+ K +
Sbjct: 264 VLLELVNKIES---KDLKEIINYVNSFIKSGWCAASVISQLHDYYVKNDELDTEFKNKLF 320
Query: 295 KEAGFAHMRICDGVGSYLQLCGLLAKLS 322
R+ +G +LQL L K+S
Sbjct: 321 LLLFETDSRLANGTNEHLQLLNLAVKIS 348
>gi|355716188|gb|AES05532.1| replication factor C 5, 36.5kDa [Mustela putorius furo]
Length = 337
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/299 (37%), Positives = 174/299 (58%), Gaps = 3/299 (1%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA A +L
Sbjct: 39 NLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLY 98
Query: 72 -GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
+ V+ELNASDDRGI++VR I FA + G K+V+LDEAD+MT AQ A
Sbjct: 99 KDKEFGSMVLELNASDDRGIEIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNA 157
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
LRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL V++EEKV
Sbjct: 158 LRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIEEEKVDL 217
Query: 191 VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++ +L
Sbjct: 218 SEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQ 277
Query: 251 KFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGV 308
F A + +L L G + DI+T + + + +++ + + R+ G
Sbjct: 278 DFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRVHLLAKMADIEYRLSVGT 336
>gi|195038153|ref|XP_001990525.1| GH18198 [Drosophila grimshawi]
gi|193894721|gb|EDV93587.1| GH18198 [Drosophila grimshawi]
Length = 356
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 119/314 (37%), Positives = 178/314 (56%), Gaps = 10/314 (3%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP V D+V + VA L ++PN++L GPPGTGKT++ILA A ++ G
Sbjct: 34 PWVEKYRPRSVDDVVEQSEVVAVLRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFGD 93
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVT--LPPGK----HKVVVLDEADSMTAGA 127
YRE ++ELNASD+RGI+VVR KIK FAQ + P G+ K++VLDEADSMT A
Sbjct: 94 MYRERILELNASDERGINVVRTKIKNFAQLTASSVRPDGRPCPPFKIIVLDEADSMTHAA 153
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
Q ALRRTME S STRF L CN S+II PI SRC+ RF L + +I++RL + E
Sbjct: 154 QAALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGETQIITRLQHICDLES 213
Query: 188 VPYVPEGLEAIIFTADGDMRQALNNLQATY---SGFRFVNQENVFKVCDQPHPLHVKNMV 244
V P+ ++I+ + GDMR+A+ LQ+ Y +N +++ ++ ++ + +
Sbjct: 214 VSIEPDAYQSIVKISGGDMRRAITTLQSCYRLKGAEHTINSDDLLEMSGIIPEHYLDDYL 273
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFMKEAGFAHMR 303
G ++ ++++ YS ++ +++ + + K + G R
Sbjct: 274 EVCRSGNYERLEHFVREIGYSAYSVGQMMEQFVEYVVRCGSLTDKQKAIICDKLGECCYR 333
Query: 304 ICDGVGSYLQLCGL 317
+ DG YLQ+ L
Sbjct: 334 LQDGGSEYLQIMDL 347
>gi|194763220|ref|XP_001963731.1| GF21175 [Drosophila ananassae]
gi|190618656|gb|EDV34180.1| GF21175 [Drosophila ananassae]
Length = 352
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 180/316 (56%), Gaps = 16/316 (5%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WVEKYRP V D+V + VA L G++PN++L GPPGTGKT++ILA ++ G
Sbjct: 31 WVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAAGRQIFGDM 90
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--LPPGK----HKVVVLDEADSMTAGAQ 128
Y+ ++ELNASD+RGI+VVR KIK F+Q + P G+ K+V+LDEADSMT AQ
Sbjct: 91 YKNRILELNASDERGINVVRTKIKTFSQLAASSVRPDGRPCPPFKIVILDEADSMTHAAQ 150
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKV 188
ALRRTME S STRF L CN S+II PI SRC+ RF L +E++++RL + ++E V
Sbjct: 151 SALRRTMEKESQSTRFCLICNYVSRIIVPITSRCSKFRFKSLGEEKVIARLQFICEQEGV 210
Query: 189 PYVPEGLEAIIFTADGDMRQALNNLQATYSGFRF------VNQENVFKVCDQPHPLHVKN 242
P+ ++I+ + GD+R+A+ LQ S FR +N ++F++ ++ +
Sbjct: 211 QIDPDAYKSIVKISGGDLRRAITTLQ---SCFRLKGPEHTINTADLFEMSGVIPDYYLDD 267
Query: 243 MVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAH 301
+ G ++ ++ + YS ++ I N+ + + K + + G
Sbjct: 268 YLEVCRSGDYERLEKFVRDIGYSAYSVGQMMEQFVEFIVNHPGLNDPQKAKICDKLGECC 327
Query: 302 MRICDGVGSYLQLCGL 317
R+ DG YLQ+ L
Sbjct: 328 FRLQDGASEYLQIMDL 343
>gi|448113261|ref|XP_004202306.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
gi|359465295|emb|CCE89000.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
Length = 331
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 175/289 (60%), Gaps = 6/289 (2%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP+ + ++ G D V+ + +G +P+L+ GPPGTGKT++I ALA E+
Sbjct: 9 NLPWVEKYRPSSLDEVNGQNDIVSTVRKFVHEGKLPHLLFYGPPGTGKTSTITALAKEIY 68
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G NYR V+ELNASDDRGIDVVRN+IK FA G K+++LDEAD+MT+ AQ +L
Sbjct: 69 GSNYRNMVLELNASDDRGIDVVRNQIKEFASTMQIFSKG-FKLIILDEADAMTSTAQNSL 127
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR +E Y+ +TRF + N + K+ + SRC RFS +S E + + + V+ +E++
Sbjct: 128 RRIIEKYTKNTRFCILANYAHKLNPALVSRCTRFRFSPISQEAVNTTIATVITKEQLKIS 187
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQE----NVFKVCDQPHPLHVKNMVRNV 247
E +E++ A GDMR+ALN LQA + + N E ++ HP ++ ++ ++
Sbjct: 188 SEAIESLCALARGDMRKALNVLQACKASLQDDNDEIDTDMIYNCIGAAHPKDIEAVLDSI 247
Query: 248 LEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMK 295
L+ ++ + + + + G + D+++ I+ YE+ ++E ++
Sbjct: 248 LQDEWTSSYNTISICKREKGLALIDLLSGFVSILNKYELKPATRIEILR 296
>gi|354492255|ref|XP_003508264.1| PREDICTED: replication factor C subunit 4 [Cricetulus griseus]
gi|344245879|gb|EGW01983.1| Replication factor C subunit 4 [Cricetulus griseus]
Length = 362
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 124/330 (37%), Positives = 184/330 (55%), Gaps = 14/330 (4%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS + +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 25 GSSGETKKVKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 84
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP +R V+ELNASD+RGI VVR K+K FAQ V+ PP
Sbjct: 85 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--F 142
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD
Sbjct: 143 KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD 202
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFK 230
+ RL+ + ++E V E + ++ ++GD+R+A+ LQ+ +G + V ++ +
Sbjct: 203 KIQRERLLDIAEKENVKISHEVIAYLVKVSEGDLRKAITFLQSATRLTGGKEVMRDVITD 262
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHL 289
+ + + G FD + +K L D G + ++ L +++N ++++
Sbjct: 263 IAGVIPATTIDGIFTACQSGSFDKLEAVVKDLIDEGQAAVQLVNQLHDVVVENEDLSDKQ 322
Query: 290 KLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
K ++ + DG +LQL L A
Sbjct: 323 KSIITEKLAEVDKCLADGADEHLQLMSLCA 352
>gi|123482551|ref|XP_001323818.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
gi|121906690|gb|EAY11595.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
Length = 325
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 126/315 (40%), Positives = 174/315 (55%), Gaps = 9/315 (2%)
Query: 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
S +A ++PWVEKYRP + DIV +AV L G++P+LI GPPGTGKT+ LAL
Sbjct: 2 SKTADNLPWVEKYRPKNLDDIVQQEEAVKALKTTLETGDLPHLIFHGPPGTGKTSLALAL 61
Query: 67 AHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMT 124
L G ++R V ELNASD+RGID VR+ IK FA + +P GK K+V+LDEADSMT
Sbjct: 62 CRSLFGDDFRLRVKELNASDERGIDAVRSSIKEFAS--LAVPNGKIPFKIVILDEADSMT 119
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
+ AQ ALRR +E YS+ TRF + CN SKII+PI SRCA RF L I+ RL + +
Sbjct: 120 SAAQNALRRIIETYSSVTRFIIICNYVSKIIDPILSRCAKFRFKPLDRPAIIERLHKIFE 179
Query: 185 EEKVPYVPEG-LEAIIFTADGDMRQALNNLQ---ATYSGFRFVNQENVFKVCDQPHPLHV 240
++ + E E ++ + GD+R+A+ Q +T S R + E + + P+P V
Sbjct: 180 DQNLSVDSEDTYETLVNISGGDLRKAITFAQSAASTCSLTRKITSEIITSISGAPNPADV 239
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFMKEAGF 299
+N + L +D + L GY I L I+K E+ E K E + +
Sbjct: 240 ENYFKTCLSADWDTIENATIDLVYAGYDIGQIFEILINLIVKTNEIPEAKKPELILKIAQ 299
Query: 300 AHMRICDGVGSYLQL 314
A I + QL
Sbjct: 300 ADGAIINRADPQFQL 314
>gi|255710491|ref|XP_002551529.1| KLTH0A01540p [Lachancea thermotolerans]
gi|238932906|emb|CAR21087.1| KLTH0A01540p [Lachancea thermotolerans CBS 6340]
Length = 328
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/291 (36%), Positives = 172/291 (59%), Gaps = 6/291 (2%)
Query: 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH 68
SA ++PW+EKYRP + D+ G + V + ++G +P+L+ GPPGTGKT+ I+AL+
Sbjct: 4 SAENLPWIEKYRPQTLDDVYGQREIVGTVRKFVKEGRLPHLLFYGPPGTGKTSMIVALSR 63
Query: 69 ELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQ 128
E+ G NYR V+ELNASDDRGIDVVRN+IK FA + G K+++LDEAD+MT AQ
Sbjct: 64 EIYGTNYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKG-FKLIILDEADAMTNAAQ 122
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKV 188
ALRR +E Y+ +TRF + N + K+ + SRC RF L + I R+ V+ E +
Sbjct: 123 NALRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPTDAIEKRVNKVLILENL 182
Query: 189 PYVPEGLEAIIFTADGDMRQALNNLQATYSGFR----FVNQENVFKVCDQPHPLHVKNMV 244
E A++ + GDMR+ALN LQA+ + V ++ +++ PHP ++ +
Sbjct: 183 KLSREAFTALLRLSKGDMRRALNVLQASKATLDDPDAEVTEDTIYECIGAPHPQDIETAL 242
Query: 245 RNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFM 294
++L+ + A + ++ L G + D++ + ++ YE+ ++E +
Sbjct: 243 ESMLKDDWSTAFFTVNKIRTLKGLALIDLVEGIVETLEGYELKPETRVELL 293
>gi|119182767|ref|XP_001242497.1| hypothetical protein CIMG_06393 [Coccidioides immitis RS]
gi|392865396|gb|EAS31179.2| activator 1 subunit 3 [Coccidioides immitis RS]
Length = 398
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/339 (34%), Positives = 188/339 (55%), Gaps = 31/339 (9%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP+ + D+ G+ D +A + +P+L+L GPPGTGKT++ILALA ++
Sbjct: 42 NLPWVEKYRPSTLDDVSGHQDIIATINRFIESNRLPHLLLYGPPGTGKTSTILALARQIY 101
Query: 72 G-PNYREAVMELNASDDRGIDVVRNKIKMFAQKK--VTLPPGKH--------KVVVLDEA 120
G N R+ V+ELNASDDRGIDVVR +IK FA K ++ PG K+++LDEA
Sbjct: 102 GVKNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQAGSKLGAFKLIILDEA 161
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D+MTA AQ ALRR ME Y+ +TRF + N + K+ + SRC RFS L +++I +
Sbjct: 162 DAMTAAAQMALRRIMEKYTANTRFCIIANYTHKLTPALLSRCTRFRFSPLKEQDIRVLVD 221
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF------------------RF 222
V+++E+V P+ +++++ + GDMR+ALN LQA ++
Sbjct: 222 QVIEKEQVRIQPDAIDSLVRLSKGDMRRALNVLQACHASSMPLPLRDVPKDQQPAREPET 281
Query: 223 VNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDL--GYSPTDIITTLFRII 280
+ + ++ P PL +K ++ +L +C Q + G + DI+T L +
Sbjct: 282 ITDDTIYTCIAAPRPLDIKTIMETLLSTSDVTSCLNTIQTLKISKGLALADILTALANEL 341
Query: 281 KNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
++ E+ ++ +++ R+ G +Q GL+
Sbjct: 342 QHIEVPAQTRVAWLEGLADIEWRLSGGGAEAIQTGGLVG 380
>gi|242042039|ref|XP_002468414.1| hypothetical protein SORBIDRAFT_01g045530 [Sorghum bicolor]
gi|241922268|gb|EER95412.1| hypothetical protein SORBIDRAFT_01g045530 [Sorghum bicolor]
Length = 339
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 180/327 (55%), Gaps = 15/327 (4%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP +V D+ + + L + ++P+++ GPPGTGKTT+ LA+A++L GP
Sbjct: 10 PWVEKYRPRQVKDVAHQEEVIRVLTNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGP 69
Query: 74 N-YREAVMELNASDDRGIDVVRNKIKMFAQ------KKVTLPPGKHKVVVLDEADSMTAG 126
Y+ V+ELNASDDRGI+VVR KIK FA +K P +K+++LDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTARKAGYPCPPYKIIILDEADSMTED 129
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS+E + SR+M + EE
Sbjct: 130 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRIMHICNEE 189
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH-VKNMVR 245
+ + L + + GD+R+A+ LQ+ F + P VK+++
Sbjct: 190 GLNLDAQALSTLSAISQGDLRRAITYLQSAARLFGSSLSSSDLISVSGVIPEDVVKSLLA 249
Query: 246 NVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRI 304
G+FD A + + GY + ++ +I + ++ + K K+ G +
Sbjct: 250 ACKSGEFDVANKEVSNIIADGYPVSQLMAQFLDVIVSADDIQDDQKARICKKLGETDKCL 309
Query: 305 CDGVGSYLQLCGLLAKLSIVRETAKAV 331
DG YLQL L + ET +A+
Sbjct: 310 VDGADEYLQL------LDVASETIRAL 330
>gi|225679164|gb|EEH17448.1| replication factor C subunit 3 [Paracoccidioides brasiliensis Pb03]
Length = 391
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 120/334 (35%), Positives = 186/334 (55%), Gaps = 34/334 (10%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D+ G+ D + + +P+L+L GPPGTGKT++ILALA +
Sbjct: 44 NLPWVEKYRPNSLDDVSGHHDIIGTINRFIDSNRLPHLLLYGPPGTGKTSTILALARRIY 103
Query: 72 G-PNYREAVMELNASDDRGIDVVRNKIKMFAQKK--VTLPP--------GKHKVVVLDEA 120
G N R+ V+ELNASDDRGIDVVR++IK FA K ++ P G K+++LDEA
Sbjct: 104 GVKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSMAPVAKSESSLGAFKLIILDEA 163
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D+MTA AQ ALRR ME Y+ + RF + N + K+ + SRC RFS L +++I + +
Sbjct: 164 DAMTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRALVN 223
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSG-----------------FRFV 223
V+++E+V PE +++++ + GDMR+ALN LQA ++ V
Sbjct: 224 QVIEKEQVRIQPEAIDSLVELSKGDMRRALNVLQACHASSIPLPMKNAPKDRPSAEHETV 283
Query: 224 NQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDL----GYSPTDIITTLFRI 279
+QE ++ PHP +K ++ +L D S L + L G + DI+T L
Sbjct: 284 SQETIYTCIAAPHPSDIKTIITALLTTS--DVTSCLNTIQTLKSNKGLALVDILTALSAE 341
Query: 280 IKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
++ E+ ++ +M+ R+ G G +Q
Sbjct: 342 LQRIEVPAAARVVWMEGLADIEWRLASGGGEMVQ 375
>gi|170030843|ref|XP_001843297.1| replication factor C subunit 4 [Culex quinquefasciatus]
gi|167868416|gb|EDS31799.1| replication factor C subunit 4 [Culex quinquefasciatus]
Length = 355
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 105/216 (48%), Positives = 140/216 (64%), Gaps = 6/216 (2%)
Query: 8 SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
S + +PWVEKYRP V D+V + VA L ++PNL+L GPPGTGKT++ILA A
Sbjct: 25 SKTHSVPWVEKYRPKNVDDVVEQGEVVAVLRESLSTADLPNLLLYGPPGTGKTSTILAAA 84
Query: 68 HELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKV--TLPPGK----HKVVVLDEAD 121
+L G ++E ++ELNASDDRGI V+RNK+K FAQ T P GK K+V+LDEAD
Sbjct: 85 RQLFGDMFKERILELNASDDRGIAVIRNKVKTFAQLAASGTRPDGKPCPPFKIVILDEAD 144
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
+MT AQ ALRRTME + +TRF L CN S+IIEPI SRC RF L E+I+ RL
Sbjct: 145 AMTHAAQAALRRTMEKETKTTRFCLVCNYVSRIIEPITSRCTKFRFKPLRQEKIIERLRF 204
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY 217
+ +E V + + I+ + GD+R+A+ LQ+ +
Sbjct: 205 ICDQETVEVEDQAYQDIVDISGGDLRRAITTLQSCH 240
>gi|71028744|ref|XP_764015.1| replication factor C subunit 3 [Theileria parva strain Muguga]
gi|68350969|gb|EAN31732.1| replication factor C subunit 3, putative [Theileria parva]
Length = 347
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 117/321 (36%), Positives = 176/321 (54%), Gaps = 15/321 (4%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + DI+ + D ++ L I A G +P+L+ GPPG+GKT++ILA++ L G
Sbjct: 8 PWVEKYRPETLQDIISHEDIMSTLMIFAEKGQLPHLLFHGPPGSGKTSTILAISRYLYGS 67
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTL--------PPGKH-KVVVLDEADSMT 124
V+ELNASD+RGID VR++IK F++ T PP + K+++LDEAD MT
Sbjct: 68 QRNGFVLELNASDERGIDTVRDQIKAFSETSNTFTSTMPVDDPPRTNLKLIILDEADQMT 127
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALRR MEIYSN+ RF L CN +KII PIQSRC RF L + + R+ + +
Sbjct: 128 NAAQNALRRIMEIYSNNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKSDVVRERIREIAK 187
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATY----SGFRFVNQEN-VFKVCDQPHPLH 239
E V L+A++ GDMR+ LN LQ T G F N + P
Sbjct: 188 LENVKITDCALDALVEIGQGDMRRVLNCLQVTSMSHAKGADFTIDANLILATSGLPQSSE 247
Query: 240 VKNMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAG 298
+ ++++++++ F + L L + GYS DI+ L++ I + ++ +
Sbjct: 248 IDHLLKSLMQNSFKECIYELSVLHHKKGYSLEDIVRLLYKSIVKIDWPNVPIVQLLIRLA 307
Query: 299 FAHMRICDGVGSYLQLCGLLA 319
R+ G S +Q+ +++
Sbjct: 308 DVEERLAAGANSNIQIASIVS 328
>gi|11559504|gb|AAG37987.1|AF071409_1 replication factor C subunit 2 [Plasmodium falciparum]
Length = 330
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 135/326 (41%), Positives = 178/326 (54%), Gaps = 35/326 (10%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
+IPWVEKYRP ++ DIV +AV L + R NMP+LI GPPGTGKT++I ALAHEL
Sbjct: 3 NIPWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELF 62
Query: 72 GP-NYREAVMELNASDDRGIDVVRNKIKMF-----------AQKKVTLPPGKHKVVVLDE 119
G N E V+ELNASDDRGI+VVR KIK + ++ K LP K +VVLDE
Sbjct: 63 GKENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWK--LVVLDE 120
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
AD MT AQ ALRR +EIYSN TRF L CN KI +PI SRC+ RF + +L
Sbjct: 121 ADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKL 180
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH 239
+ + Q E + V + LE II T +GD+R+A++ LQ + +V V P
Sbjct: 181 LYICQNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCINTKITLNSVLDVSGLPS--- 237
Query: 240 VKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDII------TTLFRIIKNY-----EMAEH 288
N+V ++ DAC +K L + + DII +F+ NY E +
Sbjct: 238 -DNIVYKII-----DACK-MKDLKLVEKTVQDIIEDGFDVAYIFKSFNNYFVTNTEYEDS 290
Query: 289 LKLEFMKEAGFAHMRICDGVGSYLQL 314
LK + + E R+ G Y+QL
Sbjct: 291 LKYQILLELFRHDYRLHCGATQYIQL 316
>gi|255082558|ref|XP_002504265.1| predicted protein [Micromonas sp. RCC299]
gi|226519533|gb|ACO65523.1| predicted protein [Micromonas sp. RCC299]
Length = 355
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/316 (35%), Positives = 172/316 (54%), Gaps = 4/316 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WVEKYRP+K+ D+ + D + +G + +P L+L GPPGTGKT++ILA+A EL GP
Sbjct: 33 WVEKYRPSKLSDVAAHKDIIDTIGRLTSQDRLPYLLLYGPPGTGKTSTILAVAKELYGPQ 92
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+ + +ELNASDDRGIDVVRN+I FA K+++LDE DSMT AQ ALRR
Sbjct: 93 FSQMTLELNASDDRGIDVVRNEISAFASTMRFGSNAGFKLIILDECDSMTKDAQFALRRI 152
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
+E Y+ TRF L N SK+I +QSRC RFS L + R+ VV++E + +
Sbjct: 153 IEKYTKHTRFCLIGNYVSKVIPALQSRCTRFRFSPLGPNAVKDRVQFVVRQENLQITDDA 212
Query: 195 LEAIIFTADGDMRQALNNLQATY---SGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
++A+ GDMR+ LN LQ+++ G ++ +V+ QP P ++ + +L
Sbjct: 213 IDAVTRLGAGDMRRTLNILQSSFLSKEGDGPIDANSVYATTGQPRPEDIEAIAGVLLNSN 272
Query: 252 FDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
F +A + + + + G + DI+ L + M + + + + R+
Sbjct: 273 FKEAVAKVAAIKQERGLALADIVRLLVEYVFRLHMPQLARANLVSDMADVEYRLAYVTHE 332
Query: 311 YLQLCGLLAKLSIVRE 326
LQL L+ + RE
Sbjct: 333 RLQLMALVGAFANARE 348
>gi|307191665|gb|EFN75139.1| Replication factor C subunit 5 [Harpegnathos saltator]
Length = 329
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 110/326 (33%), Positives = 188/326 (57%), Gaps = 4/326 (1%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
+S+ ++PWVEKYRP + +++ + + + + +P+L+L GPPGTGKT++I
Sbjct: 2 TSNDEQLVNLPWVEKYRPKNLDELISHETIIKTINKFIDENQLPHLLLYGPPGTGKTSTI 61
Query: 64 LALAHELLGPNYREA--VMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
LA A +L P + V+ELNASDDRGI +VR +I FA T+ K+++LDEAD
Sbjct: 62 LACARKLYTPAQFNSMVVLELNASDDRGIGIVRGQILSFASTG-TMYKSAFKLIILDEAD 120
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
+MT AQ ALRR +E Y+++ RF + CN SKII +QSRC RF L+ E+I+ RL
Sbjct: 121 AMTIDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIIPRLNH 180
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
V++ E + +G +A++ + GDMR+ ++ LQ+T+ + VN+ NV+ P P ++
Sbjct: 181 VIEAENLNVTEDGKQALMTLSGGDMRKVISVLQSTWFAYGIVNEGNVYNCVGHPLPSDIR 240
Query: 242 NMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
N+V +L +D ++QL + G + DI+T + + + + + ++ + +
Sbjct: 241 NIVNWLLNEPYDTCYKNIQQLKLNKGLALQDILTEIHLCVIKIDFPDSIFIDLLCKLAEI 300
Query: 301 HMRICDGVGSYLQLCGLLAKLSIVRE 326
R+ G +Q+ L++ +R+
Sbjct: 301 EKRLASGCRDAIQVNSLISAFYKIRD 326
>gi|294920987|ref|XP_002778643.1| Replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239887323|gb|EER10438.1| Replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 277
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/214 (50%), Positives = 140/214 (65%), Gaps = 8/214 (3%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP +V ++ + V L GN+P+L+ GPPG GKT++ILALA EL G
Sbjct: 23 VPWVEKYRPARVEELAHQPEVVGALKEAVGTGNLPHLLFYGPPGNGKTSAILALARELFG 82
Query: 73 PN-YREAVMELNASDDRGIDVVRNKIKMFAQKKV-TLPPGK------HKVVVLDEADSMT 124
P +R+ V+ELNASD+RGIDV+R+K+K FAQ V + PG K++VLDEADSMT
Sbjct: 83 PELWRDRVLELNASDERGIDVIRDKVKKFAQISVRAVAPGSGKSAPPFKIIVLDEADSMT 142
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALRR +E Y+ TRF + CN S+IIEP+QSRCA RF LSDE RL +
Sbjct: 143 KDAQAALRRIIENYTQVTRFCIICNYVSRIIEPLQSRCAKFRFEPLSDESQRGRLEYIAN 202
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS 218
E V +EA++ T++GD+R A+N LQ S
Sbjct: 203 CEGVKMANGAMEALLGTSNGDLRSAINTLQMVSS 236
>gi|10798790|dbj|BAB16439.1| replication factor C 36kDa subunit [Oryza sativa Japonica Group]
Length = 367
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/330 (35%), Positives = 184/330 (55%), Gaps = 9/330 (2%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
SS+ PWVEKYRP + D+ + D V + + + +P+L+L GPPGTGKT++IL
Sbjct: 30 SSTPGGRAAPWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTIL 89
Query: 65 ALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH--KVVVLDEADS 122
A+A +L G Y ++ELNASD+RGIDVVR +I+ FA + K K+V+LDEAD+
Sbjct: 90 AVARKLYGSQYGNMILELNASDERGIDVVRQQIQDFASARSLSFGAKQSVKMVLLDEADA 149
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT AQ ALRR +E ++ STRFAL CN +KII +QSRC RF+ L + RL +
Sbjct: 150 MTKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRERLKHI 209
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
+Q E + GL A++ ++GDMR+ALN LQ+T+ + + +E V+ P P ++
Sbjct: 210 IQSEGLDVDDGGLTALVRLSNGDMRKALNILQSTHMASKQITEEAVYLCTGNPMPKDIEQ 269
Query: 243 MVRNVLEGKFDDACSGL---KQLYDL----GYSPTDIITTLFRIIKNYEMAEHLKLEFMK 295
+ +L F + + + + D+ G + DII + + +M ++++ +
Sbjct: 270 IAYWLLNESFSTSFKCILNYQSISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRIKLIN 329
Query: 296 EAGFAHMRICDGVGSYLQLCGLLAKLSIVR 325
+ R+ LQL L++ + R
Sbjct: 330 DLADIEYRLSFACNDKLQLGALISTFTGAR 359
>gi|302843932|ref|XP_002953507.1| DNA replication factor C complex subunit 5 [Volvox carteri f.
nagariensis]
gi|300261266|gb|EFJ45480.1| DNA replication factor C complex subunit 5 [Volvox carteri f.
nagariensis]
Length = 356
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/319 (36%), Positives = 176/319 (55%), Gaps = 3/319 (0%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + ++ + + + + + +P+L+L GPPGTGKT++ILA+A ++ G
Sbjct: 37 PWVEKYRPKSLDEVAAHKQIIDTIKRLTNENRLPHLLLYGPPGTGKTSTILAVARQIYGS 96
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
+ +ELNASD+RGI VVR +I+ FA + T+ K K+++LDE D+MT AQ ALRR
Sbjct: 97 SMANMTLELNASDERGISVVRQEIQDFASTR-TIFSNKFKLIILDECDAMTNDAQFALRR 155
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
+E Y+ + RF L CN SK+I +QSRC RF+ L + + RL V E+V
Sbjct: 156 VIEKYTRNARFCLICNYVSKVIPALQSRCTKFRFAPLDPQFVHERLQYVASTERVNLGSG 215
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
L+A++ +GDMR++LN LQ+ + F V+Q+ V+ P P + ++ +L
Sbjct: 216 ALDAVVELGNGDMRRSLNILQSCHLAFDVVDQQAVYLCTGNPLPADISQVLTWLLNEPVA 275
Query: 254 DACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
D + QL D G + D++ L I M H K+ ++ R+ L
Sbjct: 276 DVFEKVTQLQVDRGVALVDVVRELHPWIMKTSMPVHAKIALVERMADVEHRLAYSTSEKL 335
Query: 313 QLCGLLAKLSIVRET-AKA 330
QL GL+A RE AKA
Sbjct: 336 QLGGLIAAFVKAREVIAKA 354
>gi|374327674|ref|YP_005085874.1| replication factor C small subunit [Pyrobaculum sp. 1860]
gi|356642943|gb|AET33622.1| replication factor C small subunit [Pyrobaculum sp. 1860]
Length = 329
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 174/310 (56%), Gaps = 6/310 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W EKYRP ++V + ARL + G+MP+L+ GPPGTGKTT L LA EL G
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRGFVKSGDMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQALR 132
+RE +ELNASD+RGI+V+R ++K FA+ T P GK K+V+LDEAD+MT+ AQQALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQALR 122
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R MEIY+ +TRF L N S+II+PI SRCAI RFS + + RL ++ + E V
Sbjct: 123 RIMEIYAQNTRFILLANYVSRIIDPIISRCAIFRFSPMPKNLMAERLRLIAKSEGVELRD 182
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+ ++ I ++GDMR+A+N LQ + + V+ V P + + + G
Sbjct: 183 DAIDIIYELSEGDMRKAINLLQVVAATNKVVDSNAVAAAAATIKPSDIIELFNLAIGGDV 242
Query: 253 DDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A L++L Y G + D I R + + + +K E + R+ G
Sbjct: 243 SKAREKLRELMYLKGVAGVDFIRAFQRELIRMALDDDVKAEIAELLADIDYRLTQGADEE 302
Query: 312 LQLCGLLAKL 321
+QL LL+KL
Sbjct: 303 IQLTYLLSKL 312
>gi|333911588|ref|YP_004485321.1| replication factor C [Methanotorris igneus Kol 5]
gi|333752177|gb|AEF97256.1| Replication factor C [Methanotorris igneus Kol 5]
Length = 756
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/243 (45%), Positives = 156/243 (64%), Gaps = 6/243 (2%)
Query: 82 LNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQALRRTMEIYS 139
L+ SD+RGIDV+R K+K FA+ K P G K++ LDE+D++T+ AQ ALRRTME YS
Sbjct: 511 LHNSDERGIDVIRTKVKDFARTK---PIGDAPFKIIFLDESDALTSDAQNALRRTMEKYS 567
Query: 140 NSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAII 199
+ RF L+CN SKII PIQSRCAI RFS L E+++ +L + ++E + PEG+EAII
Sbjct: 568 DVCRFILSCNYPSKIIPPIQSRCAIFRFSPLKKEDVVKKLKEIAEKEGLTLTPEGIEAII 627
Query: 200 FTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGL 259
+ ++GDMR+A+N LQ S + +N E V+KV + P +K M+ LEGKF +A L
Sbjct: 628 YVSEGDMRKAINVLQTAASVSKEINDEVVYKVSSRARPEEIKKMIELALEGKFIEARELL 687
Query: 260 -KQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLL 318
K + D G S D+I +FR I + + E K+E ++ G RI +G +QLC LL
Sbjct: 688 YKLMIDWGMSGEDVILQIFREIPSLNIDERKKVELVEALGECDYRIVEGANERIQLCALL 747
Query: 319 AKL 321
AK+
Sbjct: 748 AKM 750
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 50/72 (69%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + +IVG+ + V RL +MP+L+ +GPPG GKTT+ L LA +L G
Sbjct: 4 PWVEKYRPKTLDEIVGHEEIVKRLKKYVEKKSMPHLLFSGPPGVGKTTAALCLARDLFGE 63
Query: 74 NYREAVMELNAS 85
N+R+ +ELNAS
Sbjct: 64 NWRDNFLELNAS 75
>gi|326475565|gb|EGD99574.1| DNA replication factor C subunit Rfc3 [Trichophyton tonsurans CBS
112818]
gi|326483166|gb|EGE07176.1| DNA replication factor C subunit Rfc3 [Trichophyton equinum CBS
127.97]
Length = 397
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/336 (34%), Positives = 187/336 (55%), Gaps = 28/336 (8%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D+ G+ D +A + +P+L+L GPPGTGKT++ILALA +
Sbjct: 44 NLPWVEKYRPDTLDDVSGHQDIIATINRFVDSNRLPHLLLYGPPGTGKTSTILALARRIY 103
Query: 72 GP-NYREAVMELNASDDRGIDVVRNKIKMFAQKK---VTLPP-----GKHKVVVLDEADS 122
G N R+ V+ELNASDDRGIDVVR +IK FA K T P G K+++LDEAD+
Sbjct: 104 GSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADA 163
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT+ AQ ALRR ME Y+ +TRF + N + K+ + SRC RFS L +++I + V
Sbjct: 164 MTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRRLVDTV 223
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-----------------RFVNQ 225
+++E+V P+ +++++ + GDMR+ALN LQA ++ + +
Sbjct: 224 IEKEEVQIQPDAVDSLVTLSKGDMRRALNVLQACHASSMPLPSKKGDGNEQQQERETITE 283
Query: 226 ENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLY--DLGYSPTDIITTLFRIIKNY 283
E ++ PHP +K ++ +L +C Q + G + DII+ L +++
Sbjct: 284 ETIYTCIAAPHPADIKIILETLLSTSDVTSCLNTVQTLKANKGLALADIISALSTELQSL 343
Query: 284 EMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
E+ +++ +++ R+ G +Q G++
Sbjct: 344 EVPAQVRVSWIEGLADVEWRLSGGGSEVIQTGGMIG 379
>gi|195389432|ref|XP_002053381.1| GJ23369 [Drosophila virilis]
gi|194151467|gb|EDW66901.1| GJ23369 [Drosophila virilis]
Length = 356
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/314 (37%), Positives = 180/314 (57%), Gaps = 10/314 (3%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP V D+V + VA L ++PN++L GPPGTGKT++ILA A ++ G
Sbjct: 34 PWVEKYRPRSVDDVVEQSEVVAVLRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFGD 93
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVT--LPPGKH----KVVVLDEADSMTAGA 127
YR+ ++ELNASD+RGI+VVR KIK FAQ + P G+ K++VLDEADSMT A
Sbjct: 94 MYRDRILELNASDERGINVVRTKIKNFAQLTASNVRPDGRSCPPFKIIVLDEADSMTHAA 153
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
Q ALRRTME S STRF L CN S+II PI SRC+ RF L + +I++RL + + E
Sbjct: 154 QAALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGETQIIARLQHICELEG 213
Query: 188 VPYVPEGLEAIIFTADGDMRQALNNLQATY---SGFRFVNQENVFKVCDQPHPLHVKNMV 244
V P+ ++I+ + GDMR+A+ LQ+ Y +N +++ ++ ++++ +
Sbjct: 214 VRIDPDAYKSIVRISGGDMRRAITTLQSCYRLKGAEHTINTDDLLEMSGIIPEHYLEDYL 273
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFMKEAGFAHMR 303
G ++ ++++ YS ++ I++ + + K + G R
Sbjct: 274 EVCRSGNYERLEHFVREIGYSAYSVGQMMDQFVEFIVRCGSLTDKQKAIICDKLGECCYR 333
Query: 304 ICDGVGSYLQLCGL 317
+ DG YLQ+ L
Sbjct: 334 LQDGGSEYLQIMDL 347
>gi|50543016|ref|XP_499674.1| YALI0A02068p [Yarrowia lipolytica]
gi|49645539|emb|CAG83597.1| YALI0A02068p [Yarrowia lipolytica CLIB122]
Length = 358
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 175/316 (55%), Gaps = 17/316 (5%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + D+ G+ V L + + P+L+ GPPGTGKT++ILA+A E+ G
Sbjct: 29 LPWVEKYRPDTLDDVTGHEGVVTTLKKLLANKKFPHLLFYGPPGTGKTSTILAVAREIYG 88
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG-------KHKVVVLDEADSMTA 125
P+Y+ V+ELNASDDRGIDVVR++IK+FA + G K+V+LDEAD+MT
Sbjct: 89 PSYKSMVLELNASDDRGIDVVRDQIKVFASSRQIFQRGGEENARSNFKLVILDEADAMTN 148
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRR +E Y+ TRF + N + K+ + SRC RFS L + I R+M V+
Sbjct: 149 VAQNALRRVIEQYTTHTRFCILANYTHKLNPALLSRCTRFRFSPLPEAAIDKRIMQVIDA 208
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQE-----NVFKVCDQPHPLHV 240
EKV P+ A++ + GDMR+ALN LQA ++G ++ V+ P P +
Sbjct: 209 EKVKIAPDAKAALLELSKGDMRRALNVLQACHTGLEHPGKDTITLSQVYLCVGSPDPADI 268
Query: 241 KNMVRNVLEGKFD---DACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
++ ++L + D S LK+ + G + DI+ L + + E K+ + +
Sbjct: 269 DTILTSILNDDWTTAYDTVSTLKR--ERGLALVDILEKLSAELMALNLKEKTKIALLSKL 326
Query: 298 GFAHMRICDGVGSYLQ 313
R+ +G +Q
Sbjct: 327 ADIEYRLANGGSEKIQ 342
>gi|367007966|ref|XP_003688712.1| hypothetical protein TPHA_0P01200 [Tetrapisispora phaffii CBS 4417]
gi|357527022|emb|CCE66278.1| hypothetical protein TPHA_0P01200 [Tetrapisispora phaffii CBS 4417]
Length = 335
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 110/279 (39%), Positives = 170/279 (60%), Gaps = 6/279 (2%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP+ + ++ G D V + +G +P+L+ GPPGTGKT++I+ALA E+
Sbjct: 10 NLPWVEKYRPSSLDEVYGQPDIVNTVRKFVAEGKLPHLLFYGPPGTGKTSTIIALAKEIY 69
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G NY V+ELNASDDRGIDVVRN+IK FA + G K+++LDEAD+MT AQ AL
Sbjct: 70 GKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG-FKLIILDEADAMTNAAQNAL 128
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR +E Y+ +TRF + N + K+ + SRC RF ++ + + R+ VV +E +
Sbjct: 129 RRIIEKYTKNTRFCILANYAYKLTPALLSRCTRFRFQPIAIDALERRMNNVVLQEHLNIG 188
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRF----VNQENVFKVCDQPHPLHVKNMVRNV 247
E +A++ + GDMR+ +N LQA+ S + +E +++ C P V+ +++++
Sbjct: 189 QEAKDALLKVSKGDMRRIMNVLQASKSSVDTADGEITREIIYECCGICRPEDVQKILKSI 248
Query: 248 LEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEM 285
LE F A LKQ+ G + DII L +++ YE+
Sbjct: 249 LEDDFGTAYLTLKQICQAKGLASIDIIEELVALLECYEL 287
>gi|452819401|gb|EME26461.1| replication factor C subunit 3/5 [Galdieria sulphuraria]
Length = 330
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/316 (35%), Positives = 177/316 (56%), Gaps = 3/316 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++ W+EKYRP D++ D + + ++P+++ GPPGTGKT++ILA A +
Sbjct: 7 NLMWLEKYRPKTFNDVLSQQDIIVTILRFVNSNSLPHMLFYGPPGTGKTSTILACAEHMY 66
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G N++ V+ELNASDDRGIDVVRN+IK F + G K+V+LDEAD+MT+ AQ AL
Sbjct: 67 GTNFKSMVLELNASDDRGIDVVRNEIKDFCSTQRIFATGV-KLVILDEADAMTSAAQMAL 125
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR ME Y++STRF L CN ++KII +QSRC RF L +E+I RL + + E V +
Sbjct: 126 RRIMEKYTSSTRFCLICNYANKIIPALQSRCTRFRFGPLKEEDIRLRLGQIAEREGVVFE 185
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNV-LEG 250
+ LE II + GDMR +N LQ+T+ V V++ P ++ ++ + E
Sbjct: 186 KDALETIIQLSQGDMRSCINILQSTFLSSGKVTCSTVYENTGNPSNEEMEQIMDWLNEED 245
Query: 251 KFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
F +K++ + G++ DI+ + + + M+ K +++ + G
Sbjct: 246 DFSSCYDKVKKMKAERGFALIDILRQIHKRLLTRNMSRRAKAYLLEKLADIEHQFAFGGS 305
Query: 310 SYLQLCGLLAKLSIVR 325
L LC L+ I++
Sbjct: 306 ELLNLCSLIGSFQIMK 321
>gi|448424755|ref|ZP_21582611.1| replication factor C small subunit, partial [Halorubrum terrestre
JCM 10247]
gi|445681965|gb|ELZ34390.1| replication factor C small subunit, partial [Halorubrum terrestre
JCM 10247]
Length = 223
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 104/203 (51%), Positives = 144/203 (70%), Gaps = 6/203 (2%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARL-GIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
W+EKYRP + DI G + V RL IA+D ++P+L+ +GP G GKTT+ A+A E+ G
Sbjct: 18 WIEKYRPQTLDDIHGQEEIVERLQSYIAQD-DVPHLLFSGPAGVGKTTAATAIAREIYGE 76
Query: 74 -NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
N+R +ELNASD RGIDVVR++IK FA+ G ++V LDE+DS+T AQ ALR
Sbjct: 77 DNWRGNFLELNASDQRGIDVVRDRIKGFARSSF---GGDFRIVFLDESDSLTDDAQSALR 133
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME +S++TRF L+CN SSKII+PIQSRCA+ RFS LSDE + + + E++
Sbjct: 134 RTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAEEIEVTD 193
Query: 193 EGLEAIIFTADGDMRQALNNLQA 215
G++A+++ ADGDMR+A+N+LQA
Sbjct: 194 AGVDALVYAADGDMRRAINSLQA 216
>gi|327301329|ref|XP_003235357.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
gi|326462709|gb|EGD88162.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
Length = 397
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/336 (34%), Positives = 187/336 (55%), Gaps = 28/336 (8%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D+ G+ D +A + +P+L+L GPPGTGKT++ILALA +
Sbjct: 44 NLPWVEKYRPDTLDDVSGHQDIIATINRFVDSNRLPHLLLYGPPGTGKTSTILALARRIY 103
Query: 72 GP-NYREAVMELNASDDRGIDVVRNKIKMFAQKK---VTLPP-----GKHKVVVLDEADS 122
G N R+ V+ELNASDDRGIDVVR +IK FA K T P G K+++LDEAD+
Sbjct: 104 GSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADA 163
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT+ AQ ALRR ME Y+ +TRF + N + K+ + SRC RFS L +++I + V
Sbjct: 164 MTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRRLVDTV 223
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-----------------RFVNQ 225
+++E+V P+ +++++ + GDMR+ALN LQA ++ + +
Sbjct: 224 IEKEEVQIQPDAIDSLVKLSKGDMRRALNVLQACHASSMPLPSKKGDANEQQRERETITE 283
Query: 226 ENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLY--DLGYSPTDIITTLFRIIKNY 283
E ++ PHP +K ++ +L +C Q + G + DII+ L +++
Sbjct: 284 ETIYTCIAAPHPADIKIILETLLSTSDVTSCLNTVQTLKANKGLALADIISALSTELQSL 343
Query: 284 EMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
E+ +++ +++ R+ G +Q G++
Sbjct: 344 EVPAQVRVSWIEGLADVEWRLSGGGNEVIQTGGMIG 379
>gi|452824858|gb|EME31858.1| replication factor C subunit [Galdieria sulphuraria]
Length = 330
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 113/316 (35%), Positives = 176/316 (55%), Gaps = 3/316 (0%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++ W+EKYRP D++ D + + ++P+++ GPPGTGKT++ILA A +
Sbjct: 7 NLMWLEKYRPKTFNDVLSQQDIIVTILRFVNSNSLPHMLFYGPPGTGKTSTILACAEHMY 66
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G N++ V+ELNASDDRGIDVVRN+IK F + G K+V+LDEAD+MT+ AQ AL
Sbjct: 67 GTNFKSMVLELNASDDRGIDVVRNEIKDFCSTQRIFATGV-KLVILDEADAMTSAAQMAL 125
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR ME Y+ STRF L CN ++KII +QSRC RF L +E+I RL + + E V +
Sbjct: 126 RRIMEKYTTSTRFCLICNYANKIIPALQSRCTRFRFGPLKEEDIRLRLGQIAEREGVVFE 185
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNV-LEG 250
+ LE II + GDMR +N LQ+T+ V V++ P ++ ++ + E
Sbjct: 186 KDALETIIQLSQGDMRSCINILQSTFLSSGKVTCSTVYENTGNPSNEEMEQIMDWLNEED 245
Query: 251 KFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
F +K++ + G++ DI+ + + + M+ K +++ + G
Sbjct: 246 DFSSCYDKVKKMKAERGFALIDILRQIHKRLLTRNMSRRAKAYLLEKLADIEHQFAFGGS 305
Query: 310 SYLQLCGLLAKLSIVR 325
L LC L+ I++
Sbjct: 306 ELLNLCSLIGSFQIMK 321
>gi|449277649|gb|EMC85743.1| Replication factor C subunit 4 [Columba livia]
Length = 362
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 123/330 (37%), Positives = 182/330 (55%), Gaps = 14/330 (4%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS IPWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 25 GSSGEGKRLKPIPWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 84
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP +R+ V+ELNASD+RGI V+R K+K FAQ + PP
Sbjct: 85 TILAAARELFGPELFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRSDGKVCPP--F 142
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD
Sbjct: 143 KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSD 202
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS--GFRFVNQENVFK 230
+ RL+ V ++E V E + ++ ++GD+R+A+ LQ+ G + + ++ V +
Sbjct: 203 KIQQQRLLDVAEKEHVKISSEAVSYLVKVSEGDLRKAITFLQSATRLMGGKEITEKIVTE 262
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLF-RIIKNYEMAEHL 289
+ + ++ G F+ + K L + GY+ ++ L ++++ +
Sbjct: 263 IAGVIPKETIDELLSVCQSGSFEKLETLAKNLINEGYAVAQLVNQLHDAVVESEAYRDKE 322
Query: 290 KLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
K +++ + DG YLQL L A
Sbjct: 323 KSAIVEKLAEVDKCLVDGADEYLQLMSLCA 352
>gi|255712103|ref|XP_002552334.1| KLTH0C02442p [Lachancea thermotolerans]
gi|238933713|emb|CAR21896.1| KLTH0C02442p [Lachancea thermotolerans CBS 6340]
Length = 356
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 121/329 (36%), Positives = 183/329 (55%), Gaps = 24/329 (7%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP K+ D+ AV L + N+P+++ GPPGTGKT++ILAL EL GP
Sbjct: 25 PWVEKYRPKKLEDVTAQDHAVNVLKKTLQSANLPHMLFYGPPGTGKTSTILALTKELYGP 84
Query: 74 NY-REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK---------HKVVVLDEADSM 123
+ V+ELNASD+RGI +VR+KIK FA+ V+ P +K+++LDEADSM
Sbjct: 85 ALMKSRVLELNASDERGIAIVRDKIKSFARLTVSKPSQNDREKYPCPPYKIIILDEADSM 144
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
TA AQ ALRRTME YSN TRF L CN ++II+P+ SRC+ RF L LSR+ V
Sbjct: 145 TADAQSALRRTMENYSNVTRFCLICNYVTRIIDPLASRCSKFRFKPLDSSNALSRVQYVA 204
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVC-DQ-----PHP 237
+EE++ Y LE I+ + GD+R+A+ LQ+T + ++ + + D+ P
Sbjct: 205 KEERLQYDEHVLEKILDVSQGDLRRAIMLLQSTSKIVKHLDPPQITALTVDELAGTVPTE 264
Query: 238 LHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
L + +V + + ++++ G+S ++ L N ++ F +A
Sbjct: 265 L-LNELVAKIATANLETIKINVREMIKSGWSGASVVNQLHHYYIN---SDQYSTAFKNKA 320
Query: 298 GF----AHMRICDGVGSYLQLCGLLAKLS 322
+ A ++ +G ++QL L KL+
Sbjct: 321 SWLIFDADSKLTNGSNEHIQLLNLAMKLA 349
>gi|82540400|ref|XP_724521.1| replication factor C3 [Plasmodium yoelii yoelii 17XNL]
gi|23479189|gb|EAA16086.1| replication factor C3 [Plasmodium yoelii yoelii]
Length = 344
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 174/313 (55%), Gaps = 6/313 (1%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
IPWVEKYRP + DI+ + ++ + G +P+L+L GPPGTGKT++ILA+ EL G
Sbjct: 13 IPWVEKYRPGVLNDIISHEQVISTIRKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYG 72
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH---KVVVLDEADSMTAGAQQ 129
+ V+ELNASDDRGI VVR +IK FA+ K + K+++LDEAD MT AQ
Sbjct: 73 ESRSSFVLELNASDDRGITVVREQIKTFAESKNHYNICERTSLKLIILDEADHMTFPAQN 132
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
A+RR ME Y+ + RF L CN +KI IQSRC RFS L +E +L++ + + + E V
Sbjct: 133 AMRRIMENYAKNVRFCLICNYVNKITPAIQSRCTSFRFSPLKEEYMLNKALDIAKSENVN 192
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQ-ATYSGFRFVNQENV-FKVCDQPHPLHVKNMVRNV 247
G+E++I GDMR+ LN LQ + S V ENV D P P +K ++ ++
Sbjct: 193 LTKNGVESLIRVGRGDMRRILNCLQVVSLSHKNMVIDENVILSTLDIPLPSEIKFILEHL 252
Query: 248 LEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICD 306
+ ++ + +L D GYS DI+ L+ + Y+ + +K G R
Sbjct: 253 TKSTIKESYEIITKLQEDKGYSIKDIMICLYETVLTYDYPDSAICLLLKNFGEIEERCAS 312
Query: 307 GVGSYLQLCGLLA 319
G + L L++
Sbjct: 313 GATEQITLSSLIS 325
>gi|444317044|ref|XP_004179179.1| hypothetical protein TBLA_0B08450 [Tetrapisispora blattae CBS 6284]
gi|387512219|emb|CCH59660.1| hypothetical protein TBLA_0B08450 [Tetrapisispora blattae CBS 6284]
Length = 333
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 112/322 (34%), Positives = 185/322 (57%), Gaps = 7/322 (2%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
S ++ + ++PWVEKYRP K+ ++ G + V+ + +G +P+L+ GPPGTGKT++I
Sbjct: 2 SGNNRNVDNLPWVEKYRPNKLDEVYGQNEVVSTVRRFVSEGKLPHLLFYGPPGTGKTSTI 61
Query: 64 LALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM 123
+ALA E+ G NY V+ELNASDDRGIDVVRN+IK FA + G K+++LDEAD+M
Sbjct: 62 VALAREIYGNNYSNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKG-FKLIILDEADAM 120
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T AQ ALRR +E Y+ +TRF + N + K+ + SRC RF L E + R+ V+
Sbjct: 121 TNAAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPIESMRQRIDNVI 180
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRF----VNQENVFKVCDQPHPLH 239
+EKV + L A + + GDMR+ LN +QA +G +++E V++ P P
Sbjct: 181 VKEKVKISEDALNATLKLSKGDMRKVLNVIQACQAGQNSNENEIDEELVYECIGTPKPND 240
Query: 240 VKNMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMA-EHLKLEFMKEA 297
+K ++ +++ ++ A ++++ G + D+I + +++ YE+ E ++ +
Sbjct: 241 IKMILNSIMNEDWNTAYFTMERIKVTQGLALVDLIEGIVEVLEGYELKNEETRISILSRL 300
Query: 298 GFAHMRICDGVGSYLQLCGLLA 319
G I G +Q ++
Sbjct: 301 GDIEYSISHGGNERVQSSAVIG 322
>gi|334182754|ref|NP_001185060.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192020|gb|AEE30141.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 332
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 172/312 (55%), Gaps = 18/312 (5%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP +V D+ + V L + + P+++ GPPGTGKTT+ LA+AH+L G
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFG- 68
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGKHKVVVLDEADSMTAG 126
V+ELNASDDRGI+VVR KIK FA ++ P K+++LDEADSMT
Sbjct: 69 -----VLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTED 123
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS+E + +R++ + EE
Sbjct: 124 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEE 183
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMVR 245
+ E L + + GD+R+A+ LQ+ F + ++ V PL V N +
Sbjct: 184 GLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVV-PLEVVNKLF 242
Query: 246 NVLE-GKFDDACSGLKQLYDLGYSPTDIITTLFRII--KNYEMAEHLKLEFMKEAGFAHM 302
+ G FD A + + GY + II LF I+ + ++ + K + K
Sbjct: 243 TACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDK 302
Query: 303 RICDGVGSYLQL 314
R+ DG YLQL
Sbjct: 303 RLVDGADEYLQL 314
>gi|365981921|ref|XP_003667794.1| hypothetical protein NDAI_0A03940 [Naumovozyma dairenensis CBS 421]
gi|343766560|emb|CCD22551.1| hypothetical protein NDAI_0A03940 [Naumovozyma dairenensis CBS 421]
Length = 354
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 123/335 (36%), Positives = 185/335 (55%), Gaps = 16/335 (4%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
SSSS+ PWVEKYRP ++ DI AV+ L + N+P+++ GPPGTGKT++I
Sbjct: 18 SSSSALHQSKPWVEKYRPKQLDDITAQGHAVSVLKKTLQSANLPHMLFYGPPGTGKTSTI 77
Query: 64 LALAHELLGPNY-REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK---------HK 113
LALA EL GP + ++ELNASD+RGI +VR K+K FA+ V+ P +K
Sbjct: 78 LALAKELYGPELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKNDLENYPCPPYK 137
Query: 114 VVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDE 173
+++LDEADSMTA AQ ALRRTME YS TRF L CN ++II+P+ SRC+ RF L
Sbjct: 138 IIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKPLDAT 197
Query: 174 EILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT-----YSGFRFVNQENV 228
+ RL V +EE V Y + ++ I+ ++GD+R+A+ LQ+ Y+G + V +V
Sbjct: 198 NSIGRLEYVAREESVQYDDDVMKCILDISEGDLRRAITLLQSASKRILYTGEKQVTSASV 257
Query: 229 FKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAE 287
++ + ++ V + ++ + + G+S +I L I N E
Sbjct: 258 KELAGVIPDDVFQVVIDKVSKNDVNETIEYVNEFIKSGWSAASVINQLHDYYITNDEFNS 317
Query: 288 HLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLS 322
K + ++ +G ++QL LL K+S
Sbjct: 318 DFKNKVSLILFEMDSKLANGTNEHIQLLNLLVKIS 352
>gi|448307233|ref|ZP_21497133.1| Replication factor C small subunit [Natronorubrum bangense JCM 10635]
gi|445596211|gb|ELY50304.1| Replication factor C small subunit [Natronorubrum bangense JCM 10635]
Length = 1029
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 106/268 (39%), Positives = 166/268 (61%), Gaps = 3/268 (1%)
Query: 60 TTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDE 119
TT+ A+A E+ ++RE +ELNASD RGIDVVR++IK FA + + H+++ LDE
Sbjct: 764 TTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFA--RSSFGGYDHRIIFLDE 821
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
AD++T+ AQ ALRRTME +SN+TRF L+CN SS+II+PIQSRCA+ RF+ LS + + +++
Sbjct: 822 ADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELSADALEAQI 881
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH 239
+ E + +G++A+++ DGDMR+A+N LQA V++E VF + P
Sbjct: 882 REIAAIEGIDVTDDGVDALVYAGDGDMRKAINGLQAAAVMGDVVDEETVFAITSTARPEE 941
Query: 240 VKNMVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAG 298
V+ MV + ++G F A + L+ L + G + D+I L R +++ E + ++ G
Sbjct: 942 VEAMVDHAIDGDFTAARAALEDLLMERGLAGGDVIDQLHRSAWEFDIPEQATVRLLERLG 1001
Query: 299 FAHMRICDGVGSYLQLCGLLAKLSIVRE 326
RI +G LQL +LA L++ E
Sbjct: 1002 EVDYRISEGANERLQLEAMLASLALENE 1029
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
W+EKYRP ++ +I G+ + V RL ++P+L+ AGP GTGK
Sbjct: 19 WIEKYRPERLDEIKGHENIVPRLQRYVEQDDLPHLMFAGPAGTGK 63
>gi|195447178|ref|XP_002071099.1| GK25619 [Drosophila willistoni]
gi|194167184|gb|EDW82085.1| GK25619 [Drosophila willistoni]
Length = 355
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 125/322 (38%), Positives = 180/322 (55%), Gaps = 25/322 (7%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP V D+V + VA L ++PN++L GPPGTGKT++ILA ++ G
Sbjct: 32 PWVEKYRPRSVEDVVEQSEVVAVLKKCVEGADLPNMLLYGPPGTGKTSTILAAGRQIFGD 91
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVT--LPPGK----HKVVVLDEADSMTAGA 127
YR+ ++ELNASD+RGI+VVR KIK FAQ + P G+ K+++LDEADSMT A
Sbjct: 92 MYRDRILELNASDERGINVVRTKIKNFAQLSASNVRPDGRPCPPFKIIILDEADSMTHAA 151
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
Q ALRRTME S STRF L CN S+II PI SRC RF L +++I+ RL ++ Q E
Sbjct: 152 QAALRRTMEKESRSTRFCLICNYVSRIIVPITSRCTKFRFKSLGEDQIIERLKLICQAEG 211
Query: 188 VPY-VPEGLEAIIFTADGDMRQALNNLQATY---SGFRFVNQENVFKVCDQPHPLHVKNM 243
V E ++I+ + GDMR+A+ LQ+ Y +N +++F++ ++ +
Sbjct: 212 VQMDGEESYKSIVRISGGDMRRAITTLQSCYRLKGPEHIINTQDLFEMSGIIPDYYLDDY 271
Query: 244 VRNVLEGKFDDACSGLKQLYD----LGYSPTDIITTLFR----IIKNYEMAEHLKLEFMK 295
+ G + K+L D +GYS + L + I+ N + + K
Sbjct: 272 LEVCRSGNY-------KRLEDFVREIGYSAYSVGQMLEQFVEFIVLNENLTDPQKARICD 324
Query: 296 EAGFAHMRICDGVGSYLQLCGL 317
+ G R+ DG YLQ+ L
Sbjct: 325 KLGECCYRLQDGGSEYLQIMDL 346
>gi|45190411|ref|NP_984665.1| AEL196Wp [Ashbya gossypii ATCC 10895]
gi|44983307|gb|AAS52489.1| AEL196Wp [Ashbya gossypii ATCC 10895]
gi|374107881|gb|AEY96788.1| FAEL196Wp [Ashbya gossypii FDAG1]
Length = 333
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 111/323 (34%), Positives = 183/323 (56%), Gaps = 6/323 (1%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
S + +A ++PW+EKYRP + D+ G D V + ++G +P+L+ GPPGTGKT++I
Sbjct: 2 SGVARNANNLPWIEKYRPDSLDDVYGQRDVVETVRKFVQEGRLPHLLFYGPPGTGKTSTI 61
Query: 64 LALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM 123
ALA E+ G NYR V+ELNASDDRGIDVVRN+IK FA + G K+++LDEAD+M
Sbjct: 62 CALAKEIYGKNYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKG-FKLIILDEADAM 120
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T+ AQ ALRR +E Y+ +TRF + N + K+ + SRC RF L++ I R++ ++
Sbjct: 121 TSAAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLAEAAIERRVLSIM 180
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF----RFVNQENVFKVCDQPHPLH 239
E + + A++ A GDMR+ALN LQA + + V ++ V+ PHP
Sbjct: 181 AHEHLQLTEDARAALLRLAAGDMRRALNVLQAAKATLDDPAQPVTEDVVYDCVGAPHPRD 240
Query: 240 VKNMVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAG 298
++ +V ++L + A ++++ G + D+I ++ +Y++ + ++ +
Sbjct: 241 IETVVDSILRDDWATALDTVRRVRVARGLALVDMIHGAVELLTSYDLKQPTRIALLTHLA 300
Query: 299 FAHMRICDGVGSYLQLCGLLAKL 321
+ G +Q +A +
Sbjct: 301 DIEYAVSKGGSDKIQTSAAIAAI 323
>gi|399215831|emb|CCF72519.1| unnamed protein product [Babesia microti strain RI]
Length = 347
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 173/330 (52%), Gaps = 17/330 (5%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PW EKYRP + I+ + D + + G +P+L+ GPPGTGKT++ILA++ L G
Sbjct: 6 LPWTEKYRPPDLDSIISHKDIINTIKSFTEVGQIPHLLFHGPPGTGKTSTILAISKHLYG 65
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH----------KVVVLDEADS 122
V+ELNASDDRGI+VVR+KIK FA+ P K+++LDEAD
Sbjct: 66 NYANVYVLELNASDDRGINVVRDKIKTFAEALNRFVPSSDNPANQVKTNLKLIILDEADQ 125
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT +Q ALRR MEIY+ + RF L CN KII PIQSRC RFS L + ++ R + +
Sbjct: 126 MTNASQGALRRIMEIYAKNVRFCLICNYMHKIISPIQSRCTGFRFSPLDENDLRRRTLEI 185
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCD------QPH 236
E + GL A+I A GDMR+ LN Q N+ V D P
Sbjct: 186 ATNEGITLEENGLSALIEIAQGDMRKVLNTFQIAAMSKLDSQDRNIIDVNDILNASGTPL 245
Query: 237 PLHVKNMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMK 295
VK++ +++ F + ++ + +L GYS D++T L+++I + + ++ +
Sbjct: 246 EDEVKSIFNALVQSTFSECIQIIRHVQELKGYSLQDLVTCLYKLIIKIDWPTIVIVQLII 305
Query: 296 EAGFAHMRICDGVGSYLQLCGLLAKLSIVR 325
R+ G +Q+C L++ + R
Sbjct: 306 RMADIEERLATGANENIQICALVSAFTEAR 335
>gi|324508707|gb|ADY43673.1| Replication factor C subunit 4 [Ascaris suum]
Length = 354
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 124/316 (39%), Positives = 180/316 (56%), Gaps = 9/316 (2%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL- 71
+PWVEKYRP KV DIV + V+ L + + ++PNL+ GPPGTGKT++ +AL EL
Sbjct: 29 VPWVEKYRPRKVDDIVFQDEVVSVLKKVLKGADLPNLLFYGPPGTGKTSAAVALCRELFK 88
Query: 72 GPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--LPPGKH----KVVVLDEADSMT 124
P+ Y + V+E+NASD+RGI++VR +IK FA++ V+ LP G H KV++LDEAD+MT
Sbjct: 89 NPDVYSDRVLEMNASDERGINIVRTRIKEFARRAVSSRLPDGSHVLGLKVIILDEADAMT 148
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALRRTME S STRF L CN S+II P+ SRCA RF LS E RL + +
Sbjct: 149 DAAQAALRRTMEKESRSTRFFLICNYISRIIPPLTSRCAKFRFKPLSLESQKERLEYICE 208
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
+E V L +I GD+R+++ +LQ S + V + V+ ++
Sbjct: 209 QEDVEVEQAALIELIELCGGDLRRSVTHLQTMSSCHTKLTPSEVRHLSGAVPDSVVRELL 268
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFMKEAGFAHMR 303
FD+ + ++ + GY ++T LF I+ N E+ + K ++ +R
Sbjct: 269 AVCERVNFDEMFAYVESIRREGYGVYQLMTQLFSLILHNKELLDTHKSVIFEKMAECEVR 328
Query: 304 ICDGVGSYLQLCGLLA 319
+ DG +LQL L A
Sbjct: 329 LLDGADEFLQLLDLSA 344
>gi|374109199|gb|AEY98105.1| FAFR422Wp [Ashbya gossypii FDAG1]
Length = 349
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 178/329 (54%), Gaps = 20/329 (6%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP K+ D+ A+ L N+P+++ GPPGTGKT++ILAL EL GP
Sbjct: 23 PWVEKYRPRKLDDVASQAHAITVLKRTLESANLPHMLFYGPPGTGKTSTILALTKELFGP 82
Query: 74 NY-REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK---------HKVVVLDEADSM 123
+ + V+ELNASD+RGI +VR K+K FA+ VT P + +K+++LDEADSM
Sbjct: 83 SLMKSRVLELNASDERGISIVREKVKNFARLTVTNPTKEDLEQYPCPPYKIIILDEADSM 142
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
TA AQ ALRRTME YS+ TRF L CN ++II+P+ SRC+ RF L + L RL +
Sbjct: 143 TADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNVNALGRLEQIA 202
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH---- 239
Q+E + Y LE ++ A+GD+R+A+ LQ ++ E + Q L
Sbjct: 203 QQEALSYEAGALEKVLHIAEGDLRKAITLLQTAAKMTSYMAAEKI--TTAQVEELAGVVP 260
Query: 240 ---VKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRII-KNYEMAEHLKLEFMK 295
+K +V + + + ++ G+ + II+ L +N E+ K +
Sbjct: 261 DDIIKGLVEKIESKDLTEITKFVNKVVKSGWCGSSIISQLHDYYAENNELDAEKKTKIFL 320
Query: 296 EAGFAHMRICDGVGSYLQLCGLLAKLSIV 324
R+ +G ++QL L K++ V
Sbjct: 321 LLFKTDSRLSNGTDEHIQLLDLAMKITQV 349
>gi|30687479|ref|NP_849695.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192019|gb|AEE30140.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 327
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 124/313 (39%), Positives = 171/313 (54%), Gaps = 25/313 (7%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP +V D+ + P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVC------------PHMLFYGPPGTGKTTTALAIAHQLFGP 57
Query: 74 N-YREAVMELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGKHKVVVLDEADSMTA 125
Y+ V+ELNASDDRGI+VVR KIK FA ++ P K+++LDEADSMT
Sbjct: 58 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 117
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS+E + +R++ + E
Sbjct: 118 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 177
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMV 244
E + E L + + GD+R+A+ LQ+ F + ++ V PL V N +
Sbjct: 178 EGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVV-PLEVVNKL 236
Query: 245 RNVLE-GKFDDACSGLKQLYDLGYSPTDIITTLFRII--KNYEMAEHLKLEFMKEAGFAH 301
+ G FD A + + GY + II LF I+ + ++ + K + K
Sbjct: 237 FTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETD 296
Query: 302 MRICDGVGSYLQL 314
R+ DG YLQL
Sbjct: 297 KRLVDGADEYLQL 309
>gi|407408177|gb|EKF31712.1| replication factor C, subunit 3, putative [Trypanosoma cruzi
marinkellei]
Length = 355
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 116/341 (34%), Positives = 187/341 (54%), Gaps = 15/341 (4%)
Query: 1 MASSSSSSSAYDI-----PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPP 55
MA+ +S+ + + PWVEKYRP + ++V + D ++ + GN+P+L+ GPP
Sbjct: 1 MANEGKNSTVHTVKSSTLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPP 60
Query: 56 GTGKTTSILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKK----VTLPPG 110
GTGKTT+I A A+ L G + R V+E+NASDDRGIDVVR +++ FA + P
Sbjct: 61 GTGKTTTIKACAYYLFGKDRIRANVLEMNASDDRGIDVVRQQVREFASTSSFYFASAPAA 120
Query: 111 K----HKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVR 166
K+V+LDEAD M+ AQ ALRR +E Y+ + RF + CN +KII +QSRC R
Sbjct: 121 STIAAFKLVILDEADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFR 180
Query: 167 FSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQE 226
F+ + +L RL V QEE V + GL A ++GD+R+ LN +QA+ + +E
Sbjct: 181 FAPVKKNAMLPRLKFVAQEEGVRFTDGGLVAAFRLSNGDLRRCLNTMQASAMSAGEITEE 240
Query: 227 NVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYEM 285
+V++V P P V+ +V +++ F + ++Q + + G S TD++ + I+ ++
Sbjct: 241 SVYRVTGNPTPADVRGIVEDMIAHDFAASWEKVQQTVSEKGVSSTDLVREVHHIVMAMDL 300
Query: 286 AEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRE 326
+ K + + G + G+L +V+E
Sbjct: 301 PQESKCFLLMKLADVEYYAAGGAKETTCISGILGAFQLVKE 341
>gi|198429463|ref|XP_002129985.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 356
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 118/320 (36%), Positives = 179/320 (55%), Gaps = 14/320 (4%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP V D+ + VA L ++PNL+ GPPGTGKT++ILAL+ EL G
Sbjct: 33 PWVEKYRPKCVDDVAHQDEVVAVLRKSLTGADLPNLLFYGPPGTGKTSTILALSRELFGF 92
Query: 74 NY-REAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKHKVVVLDEADSMT 124
+E V+ELN+SD+RGI+V+R K+K FAQ PP +K+++LDEADSMT
Sbjct: 93 QLMKERVLELNSSDERGINVIREKVKNFAQLTANSLREDGKKCPP--YKIIILDEADSMT 150
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ+ALRRTME S +TRF L CN ++II PI SRC+ RF LS E+ RL +V +
Sbjct: 151 KAAQEALRRTMEKSSKTTRFCLICNYVTRIIPPIISRCSQFRFKSLSTEDQKKRLWMVCE 210
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATY--SGFRFVNQENVFKVCDQPHPLHVKN 242
+E V + + ++ ++GD+R+A+ LQ + G +++++V ++ +K+
Sbjct: 211 KEGVKISQDAMSCLVKCSEGDLRKAMTYLQTAHRLKGAEGIDEKDVLEITGVVPDDIIKS 270
Query: 243 MVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLF-RIIKNYEMAEHLKLEFMKEAGFAH 301
++R+ D + + G+S II+ L ++ + + K M++
Sbjct: 271 LIRSCASNSHDKVQESVDYIISEGHSAAKIISQLHDEVLTLSSLNDLQKSVVMEKIAIVD 330
Query: 302 MRICDGVGSYLQLCGLLAKL 321
+ DG YLQL L L
Sbjct: 331 KCLSDGADEYLQLMALATTL 350
>gi|405961159|gb|EKC27004.1| Replication factor C subunit 4 [Crassostrea gigas]
Length = 343
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 111/228 (48%), Positives = 149/228 (65%), Gaps = 9/228 (3%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEK+RP V D+ + VA L ++PNL+ GPPGTGKT++ILA A L G
Sbjct: 36 VPWVEKFRPRSVDDVAYQDEVVAVLKKSLEGSDLPNLLFYGPPGTGKTSTILAAARSLFG 95
Query: 73 PNYRE-AVMELNASDDRGIDVVRNKIKMFAQKKV--TLPPGK----HKVVVLDEADSMTA 125
+ V+ELNASD+RGI+VVR K+K FAQ T P GK K+++LDEADSMT+
Sbjct: 96 AEMMKLRVLELNASDERGINVVREKVKKFAQTTASGTRPDGKPCPPFKIIILDEADSMTS 155
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME S STRF L CN S+IIEPI SRCA RF L+D+ + RL + +
Sbjct: 156 PAQAALRRTMEKESKSTRFCLICNYVSRIIEPIASRCAKFRFKPLADQILTERLQGICEA 215
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQ--ATYSGFRFVNQENVFKV 231
EK+ Y E ++A+I +++GDMR+A+ LQ A G V++ +VF++
Sbjct: 216 EKISYDKESIKALIDSSEGDMRKAITYLQSVARLKGDEEVSKADVFEI 263
>gi|302308854|ref|NP_985969.2| AFR422Wp [Ashbya gossypii ATCC 10895]
gi|299790827|gb|AAS53793.2| AFR422Wp [Ashbya gossypii ATCC 10895]
Length = 349
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 178/329 (54%), Gaps = 20/329 (6%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP K+ D+ A+ L N+P+++ GPPGTGKT++ILAL EL GP
Sbjct: 23 PWVEKYRPRKLDDVASQAHAITVLKRTLESANLPHMLFYGPPGTGKTSTILALTKELFGP 82
Query: 74 NY-REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK---------HKVVVLDEADSM 123
+ + V+ELNASD+RGI +VR K+K FA+ VT P + +K+++LDEADSM
Sbjct: 83 SLMKSRVLELNASDERGISIVREKVKNFARLTVTNPTKEDLEQYPCPPYKIIILDEADSM 142
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
TA AQ ALRRTME YS+ TRF L CN ++II+P+ SRC+ RF L + L RL +
Sbjct: 143 TADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNVNALGRLEQIA 202
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH---- 239
Q+E + Y LE ++ A+GD+R+A+ LQ ++ E + Q L
Sbjct: 203 QQEALSYEAGALEKVLHIAEGDLRKAITLLQTAAKMTSYMAAEKI--TIAQVEELAGVVP 260
Query: 240 ---VKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRII-KNYEMAEHLKLEFMK 295
+K +V + + + ++ G+ + II+ L +N E+ K +
Sbjct: 261 DDIIKGLVEKIESKDLTEITKFVNKVVKSGWCGSSIISQLHDYYAENNELDAEKKTKIFL 320
Query: 296 EAGFAHMRICDGVGSYLQLCGLLAKLSIV 324
R+ +G ++QL L K++ V
Sbjct: 321 LLFKTDSRLSNGTDEHIQLLDLAMKITQV 349
>gi|226492916|ref|NP_001148581.1| replication factor C subunit 2 [Zea mays]
gi|195620566|gb|ACG32113.1| replication factor C subunit 2 [Zea mays]
Length = 339
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 179/327 (54%), Gaps = 15/327 (4%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP +V D+ + + L + ++P+++ GPPGTGKTT+ LA+A++L GP
Sbjct: 10 PWVEKYRPRQVKDVAHQEEVIRVLNNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGP 69
Query: 74 N-YREAVMELNASDDRGIDVVRNKIKMFAQ------KKVTLPPGKHKVVVLDEADSMTAG 126
Y+ V+ELNASDDRGI+VVR KIK FA +K P +K+++LDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGTARKAGYPCPPYKIIILDEADSMTED 129
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQ ALRRT E YS TRF CN S+IIEP+ SRCA RF LS+E + SR+M + EE
Sbjct: 130 AQNALRRTTETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRIMHICNEE 189
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH-VKNMVR 245
+ + + + + GD+R+A+ LQ+ F + P VK+++
Sbjct: 190 GLNLNAQAMSTLSVISQGDLRRAITYLQSAARLFGSSISSSDLISVSGVIPEDVVKSLLA 249
Query: 246 NVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRI 304
G+FD A + + GY + ++ +I + ++ + K K+ G +
Sbjct: 250 ACRSGEFDVANKEVSSIIADGYPVSQLMAQFLDVIVSADDIPDDQKARICKKLGETDKCL 309
Query: 305 CDGVGSYLQLCGLLAKLSIVRETAKAV 331
DG YLQL L + ET +A+
Sbjct: 310 VDGADEYLQL------LDVASETIRAL 330
>gi|254567680|ref|XP_002490950.1| Subunit of heteropentameric Replication factor C (RF-C), which is a
DNA binding protein and ATPase t [Komagataella pastoris
GS115]
gi|238030747|emb|CAY68670.1| Subunit of heteropentameric Replication factor C (RF-C), which is a
DNA binding protein and ATPase t [Komagataella pastoris
GS115]
gi|328352517|emb|CCA38916.1| replication factor C subunit 3/5 [Komagataella pastoris CBS 7435]
Length = 332
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 177/289 (61%), Gaps = 6/289 (2%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP+ + + G D V + +DG +P+L+ GPPGTGKT++I+ALA E+
Sbjct: 11 NLPWVEKYRPSSLDYVYGQHDTVDTVRKFVQDGRLPHLLFYGPPGTGKTSTIMALAKEIY 70
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G NYR V+ELNASDDRGI VVR++I FA + G K+++LDEAD+MT AQ AL
Sbjct: 71 GKNYRNMVLELNASDDRGISVVRDQIVNFASTRQIFSNG-FKLIILDEADAMTNVAQNAL 129
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR +E ++ +TRF + N + K+ + SRC RF +S E I R+ V+++E +
Sbjct: 130 RRVIEKFTKNTRFCVLANYAHKLNPALLSRCTRFRFQPISQEAIQLRINDVIKQEGINID 189
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGF----RFVNQENVFKVCDQPHPLHVKNMVRNV 247
+ L++++ + GDMR+ALN LQA ++G + + +++ P P +++++ +
Sbjct: 190 DDALQSLLKLSKGDMRKALNVLQACFTGLDSPSQAITSPMIYECVGAPDPQDIEHVLDTI 249
Query: 248 LEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMK 295
++ ++ A + + +L + GY+ D++ I+ Y++ + +L +K
Sbjct: 250 IQENWEAAFTIMNRLKLEKGYALIDLVNGFVDILGGYQLEKMCRLTILK 298
>gi|334182756|ref|NP_001185061.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192021|gb|AEE30142.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 341
Score = 203 bits (517), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 117/277 (42%), Positives = 160/277 (57%), Gaps = 11/277 (3%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP +V D+ + V L + + P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 74 N-YREAVMELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGKHKVVVLDEADSMTA 125
Y+ V+ELNASDDRGI+VVR KIK FA ++ P K+++LDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS+E + +R++ + E
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMV 244
E + E L + + GD+R+A+ LQ+ F + ++ V PL V N +
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNV-SGVVPLEVVNKL 248
Query: 245 RNVLE-GKFDDACSGLKQLYDLGYSPTDIITTLFRII 280
+ G FD A + + GY + II LF I+
Sbjct: 249 FTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIV 285
>gi|303319413|ref|XP_003069706.1| Activator 1 subunit 3 , putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240109392|gb|EER27561.1| Activator 1 subunit 3 , putative [Coccidioides posadasii C735 delta
SOWgp]
Length = 398
Score = 203 bits (517), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 187/339 (55%), Gaps = 31/339 (9%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP+ + D+ G+ D +A + +P+L+L GPPGTGKT++ILALA ++
Sbjct: 42 NLPWVEKYRPSTLDDVSGHQDIIATINRFIESNRLPHLLLYGPPGTGKTSTILALARQIY 101
Query: 72 G-PNYREAVMELNASDDRGIDVVRNKIKMFAQKK--VTLPPGKH--------KVVVLDEA 120
G N R+ V+ELNASDDRGIDVVR +IK FA K ++ PG K+++LDEA
Sbjct: 102 GVKNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQAGSKLGAFKLIILDEA 161
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D+MTA AQ ALRR ME Y+ +TRF + N + K+ + SRC RFS L +++I +
Sbjct: 162 DAMTAAAQMALRRIMEKYTANTRFCIIANYTHKLTPALLSRCTRFRFSPLKEQDIRVLVD 221
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF------------------RF 222
V+++E+V P+ +++++ + GDMR+ALN LQA ++
Sbjct: 222 QVIEKEQVRIQPDAIDSLVRLSKGDMRRALNVLQACHASSMPLPLRDVPRDQQPAREPET 281
Query: 223 VNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDL--GYSPTDIITTLFRII 280
+ + ++ P P +K ++ +L +C Q + G + DI+T L +
Sbjct: 282 ITDDTIYTCIAAPRPSDIKTIMETLLSTSDVTSCLNTIQTLKISKGLALADILTALANEL 341
Query: 281 KNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
++ E+ ++ +++ R+ G +Q GL+
Sbjct: 342 QHIEVPAQTRVAWLEGLADIEWRLSGGGAEAIQTGGLVG 380
>gi|146101518|ref|XP_001469135.1| putative replication factor C, subunit 3 [Leishmania infantum
JPCM5]
gi|398023497|ref|XP_003864910.1| replication factor C, subunit 3, putative [Leishmania donovani]
gi|134073504|emb|CAM72235.1| putative replication factor C, subunit 3 [Leishmania infantum
JPCM5]
gi|322503146|emb|CBZ38230.1| replication factor C, subunit 3, putative [Leishmania donovani]
Length = 364
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 181/340 (53%), Gaps = 21/340 (6%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
+ ++A +PWVEKYRP+ + +V + D ++ L + GNMP+L+L GPPGTGKTT+I A
Sbjct: 10 AKAAASHLPWVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKA 69
Query: 66 LAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTL---------------PP 109
A+ L G + R V+E+NASDDRGIDVVR + + FA P
Sbjct: 70 CAYYLYGKDRVRANVLEMNASDDRGIDVVRQQTREFASTSSIFSMMGSGSSTGGGSGGPA 129
Query: 110 GKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSR 169
K K+V+LDEAD M+ AQ ALRR +E Y+ + RF + CN +KII +QSRC RF+
Sbjct: 130 AKFKLVILDEADQMSHDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAP 189
Query: 170 LSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVF 229
+ ++ RL V ++E V Y +GL A + GD+R+ LN +QA+ V +E+V+
Sbjct: 190 VKKSAMMPRLRFVAEQEGVKYTTDGLAAAFRLSHGDLRRCLNTMQASALSANEVTEESVY 249
Query: 230 KVCDQPHPLHVKNMVRNVLEGKFDDACSGLK---QLYDLGYSPTDIITTLFRIIKNYEMA 286
+V P P V +V ++L F A S +K + G S D+ + ++ ++
Sbjct: 250 RVTGNPTPADVTAIVSDMLSSDF--ATSWIKVEESVVQKGISIADLTREIHPVMMAMDLP 307
Query: 287 EHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRE 326
+ K + + G L GLL +V+E
Sbjct: 308 QDCKCFLLMKLSDLEYYAAGGARESAGLGGLLGAFQLVKE 347
>gi|320040847|gb|EFW22780.1| DNA replication factor C subunit [Coccidioides posadasii str.
Silveira]
Length = 398
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 187/339 (55%), Gaps = 31/339 (9%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP+ + D+ G+ D +A + +P+L+L GPPGTGKT++ILALA ++
Sbjct: 42 NLPWVEKYRPSTLDDVSGHQDIIATINRFIESNRLPHLLLYGPPGTGKTSTILALARQIY 101
Query: 72 G-PNYREAVMELNASDDRGIDVVRNKIKMFAQKK--VTLPPGKH--------KVVVLDEA 120
G N R+ V+ELNASDDRGIDVVR +IK FA K ++ PG K+++LDEA
Sbjct: 102 GVKNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQAGSNLGAFKLIILDEA 161
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D+MTA AQ ALRR ME Y+ +TRF + N + K+ + SRC RFS L +++I +
Sbjct: 162 DAMTAAAQMALRRIMEKYTANTRFCIIANYTHKLTPALLSRCTRFRFSPLKEQDIRVLVD 221
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF------------------RF 222
V+++E+V P+ +++++ + GDMR+ALN LQA ++
Sbjct: 222 QVIEKEQVRIQPDAIDSLVRLSKGDMRRALNVLQACHASSMPLPLRDVPRDQQPAREPET 281
Query: 223 VNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDL--GYSPTDIITTLFRII 280
+ + ++ P P +K ++ +L +C Q + G + DI+T L +
Sbjct: 282 ITDDTIYTCIAAPRPSDIKTIMETLLSTSDVTSCLNTIQTLKISKGLALADILTALANEL 341
Query: 281 KNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
++ E+ ++ +++ R+ G +Q GL+
Sbjct: 342 QHIEVPAQTRVAWLEGLADIEWRLSGGGAEAIQTGGLVG 380
>gi|441432354|ref|YP_007354396.1| putative replication factor C small subunit [Acanthamoeba polyphaga
moumouvirus]
gi|440383434|gb|AGC01960.1| putative replication factor C small subunit [Acanthamoeba polyphaga
moumouvirus]
Length = 322
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 174/309 (56%), Gaps = 2/309 (0%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
IPW+EKYRP + +I+ +++ ++ I D +LI GPPG GKT++ +A +LG
Sbjct: 5 IPWIEKYRPATIDEIIFDINIRKQINIFLEDKKNVHLIFTGPPGIGKTSTARCIAKTMLG 64
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+E+NA++DRG+ + +I F +K V K +++LDEAD MT+ Q +
Sbjct: 65 EYMEAGYLEINAAEDRGVRSMSTRIPPFCKKVVDFTTSK--IILLDEADIMTSKCQYDIN 122
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
++ + T+F CN S+KIIE +QS C I+RF +L+D++I S L + ++E + Y
Sbjct: 123 NMIKEFGKKTKFIFTCNDSTKIIEDLQSVCRILRFKKLTDQQISSYLSKICEKENIEYDK 182
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
GL+ I + + GDMR+++N+LQ T + V + V K+C P P +K ++ L+G
Sbjct: 183 PGLDTICYISYGDMRKSINDLQKTACTYNKVTKNTVLKICRVPDPEEIKKIIALCLKGNL 242
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
+A + + L + DI+++ ++ +Y+M E KL+ + + G+ S L
Sbjct: 243 MEADKEMNDIIKLDFCYFDIVSSFVYVLSSYDMDECFKLQLIDIVNKTKTNVSKGLHSRL 302
Query: 313 QLCGLLAKL 321
QL G++ ++
Sbjct: 303 QLSGMICRI 311
>gi|242082974|ref|XP_002441912.1| hypothetical protein SORBIDRAFT_08g004780 [Sorghum bicolor]
gi|241942605|gb|EES15750.1| hypothetical protein SORBIDRAFT_08g004780 [Sorghum bicolor]
Length = 339
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 179/327 (54%), Gaps = 15/327 (4%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP +V D+ + + L + ++P+++ GPPGTGKTT+ LA+A++L GP
Sbjct: 10 PWVEKYRPRQVKDVAHQEEVIRVLTNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGP 69
Query: 74 N-YREAVMELNASDDRGIDVVRNKIKMFAQ------KKVTLPPGKHKVVVLDEADSMTAG 126
Y+ V+ELNASDDRGI+VVR KIK FA +K P +K+++LDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTARKAGYPCPPYKIIILDEADSMTED 129
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS+E + +R+M + EE
Sbjct: 130 AQNALRRTMETYSKVTRFFFICNYISRIIEPLVSRCAKFRFKPLSEEVMSNRIMHICNEE 189
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH-VKNMVR 245
+ + L + + GD+R+A+ LQ+ F + P VK+++
Sbjct: 190 GLNLDAQALSTLSAISQGDLRRAITYLQSAARLFGSSISSSDLISVSGVIPEDVVKSLLA 249
Query: 246 NVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRI 304
G+FD A + + GY + ++ +I ++ + K K+ G +
Sbjct: 250 ACRSGEFDVANKEVSNIIADGYPVSQLMAQFLDVIVGADDIPDDQKARICKKLGETDKCL 309
Query: 305 CDGVGSYLQLCGLLAKLSIVRETAKAV 331
DG YLQL L + ET +A+
Sbjct: 310 VDGADEYLQL------LDVASETIRAL 330
>gi|326489719|dbj|BAK01840.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326531584|dbj|BAJ97796.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 359
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 115/328 (35%), Positives = 185/328 (56%), Gaps = 11/328 (3%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
S++++ PWVEKYRP + D+ + D V + + + +P+L+L GPPGTGKT++IL
Sbjct: 28 SAAAAVKSSPWVEKYRPQSLADVAAHRDIVDTIDRLTDENRLPHLLLYGPPGTGKTSTIL 87
Query: 65 ALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH---KVVVLDEAD 121
A+A ++ G Y ++ELNASD+RGI VVR +I+ FA +L G K+V+LDEAD
Sbjct: 88 AVARKIYGSQYGNMILELNASDERGIGVVRQQIQDFASAH-SLSFGAKPAVKLVLLDEAD 146
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
+MT AQ ALRR +E Y+ STRFAL CN +KII +QSRC RF+ L + RL
Sbjct: 147 AMTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVSERLRH 206
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+++ E + GL A++ ++GDMR++LN LQ+T+ + + +E V+ P P ++
Sbjct: 207 IIKSEGLDVDEGGLSALVRLSNGDMRKSLNILQSTHMASQQITEEAVYLCTGNPMPKDIE 266
Query: 242 NMVRNVLEGKFDDACSGLKQLYDL----GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
+ +L F + K + D+ G + DII + + +M ++++ + +
Sbjct: 267 QIAFWLLNEPF---STSFKHIADMKMRKGLALIDIIREVTMFVFKIKMPSSVRVKLINDL 323
Query: 298 GFAHMRICDGVGSYLQLCGLLAKLSIVR 325
R+ LQL L++ + R
Sbjct: 324 ADIEYRLTFACNDKLQLGALISTFTTAR 351
>gi|224084964|ref|XP_002307456.1| predicted protein [Populus trichocarpa]
gi|222856905|gb|EEE94452.1| predicted protein [Populus trichocarpa]
Length = 342
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 175/316 (55%), Gaps = 12/316 (3%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WVEKYRP ++ D+ + V L N P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 11 WVEKYRPKQIKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLYGPE 70
Query: 75 -YREAVMELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGKHKVVVLDEADSMTAG 126
Y+ V+ELNASDDRGI+VVR KIK FA Q++ P +K+++LDEADSMT
Sbjct: 71 LYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGQRQGVYPCPPYKIIILDEADSMTED 130
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF L +E + +R++ + EE
Sbjct: 131 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLPEEIMSNRILHICNEE 190
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMVR 245
+ E L + + GD+R+A+ LQ F ++ +++ V P V +
Sbjct: 191 GLTLDTEALSTLSSVSQGDLRRAITYLQGAARLFGSSISSKDLISV-SGAIPREVTEAIY 249
Query: 246 NVLE-GKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMR 303
+ G FD A + + GY + ++ LF ++ ++++ K K A
Sbjct: 250 AACKNGDFDLANKEVNDVIAEGYPVSQMLAQLFEVVVEVDDISDEQKARICKSLATADKC 309
Query: 304 ICDGVGSYLQLCGLLA 319
+ DG YLQL +++
Sbjct: 310 LVDGADEYLQLLDVVS 325
>gi|123493043|ref|XP_001326199.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
gi|121909110|gb|EAY13976.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
Length = 325
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 124/322 (38%), Positives = 174/322 (54%), Gaps = 9/322 (2%)
Query: 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
S A ++PWVEKYRP + DIV +AV L G++P+LI GPPGTGKT+ LAL
Sbjct: 2 SKPADNLPWVEKYRPKNLDDIVQQEEAVKALKTTLETGDLPHLIFHGPPGTGKTSLALAL 61
Query: 67 AHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMT 124
L G ++R V ELNASD+RGID VR+ +K FA + +P GK K+V+LDEADSMT
Sbjct: 62 CRSLFGEDFRLRVKELNASDERGIDAVRSSVKEFAS--LAVPNGKIPFKIVILDEADSMT 119
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
+ AQ ALRR +E YS TRF + CN SKII+PI SRCA RF L I+ RL +
Sbjct: 120 SAAQNALRRIIETYSAVTRFIIICNYVSKIIDPILSRCAKFRFKPLDRPAIIQRLHKIFD 179
Query: 185 EEKVPY-VPEGLEAIIFTADGDMRQALNNLQATYSG---FRFVNQENVFKVCDQPHPLHV 240
++ + E E ++ + GD+R+A+ Q+ S R + E + + +P V
Sbjct: 180 DQNLSVDKEETFETLVDISGGDLRKAITFAQSAASTCIETRKITSEIITSISGAANPSDV 239
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFMKEAGF 299
+N L +D + L GY + I L I+K+ E+ E K + + +
Sbjct: 240 ENYFHTCLSADWDTIENATTDLVYAGYDISQIFEILISLIVKSNEIPEAKKPQLILKIAQ 299
Query: 300 AHMRICDGVGSYLQLCGLLAKL 321
A I + QL G+ A +
Sbjct: 300 ADGSIINRADPQFQLLGISASI 321
>gi|254585047|ref|XP_002498091.1| ZYRO0G02002p [Zygosaccharomyces rouxii]
gi|238940985|emb|CAR29158.1| ZYRO0G02002p [Zygosaccharomyces rouxii]
Length = 352
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 181/331 (54%), Gaps = 24/331 (7%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP K+ D+ ++ L N+P+++ GPPGTGKT++I AL EL GP
Sbjct: 24 PWVEKYRPKKLDDVSAQDHTISVLKKTLTSANLPHMLFYGPPGTGKTSTIFALTRELYGP 83
Query: 74 NYREA-VMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK---------HKVVVLDEADSM 123
+ V+ELNASD+RGI +VR K+K FA+ V+ P + +K+++LDEADSM
Sbjct: 84 ELSKTRVLELNASDERGIAIVREKVKNFARLTVSKPSKEALEKYPCPPYKIIILDEADSM 143
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
TA AQ ALRRTME +SN TRF L CN ++II+P+ SRC+ RF L + + RL +
Sbjct: 144 TADAQSALRRTMENHSNVTRFCLICNYVTRIIDPLASRCSKFRFKSLDESNAIGRLKEIS 203
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRF-----VNQENVFKVCDQPHPL 238
Q E VP+ L+ I+ ++GDMR+A+ LQ+ F + + V ++ P
Sbjct: 204 QLENVPHEEGALQRILEISNGDMRRAITLLQSAAKRLGFGELDKITSQEVEELAGLV-PT 262
Query: 239 HV-KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
H+ + M+ V +G ++ + + G+S ++ L Y + +F +
Sbjct: 263 HILQEMLNKVSQGNVNEIIEYVNEFVKNGWSAVSVVNQLHDY---YITSNDYGTDFKNKI 319
Query: 298 GF----AHMRICDGVGSYLQLCGLLAKLSIV 324
A ++ +G +LQL LL ++S V
Sbjct: 320 SLLLFDADAKLANGTNEHLQLLNLLVQISQV 350
>gi|168030360|ref|XP_001767691.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681011|gb|EDQ67442.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 338
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 119/308 (38%), Positives = 173/308 (56%), Gaps = 8/308 (2%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WVEKYRP KV D+ + V L GN+P+L+ GPPGTGKTT+ LA+ H+L GP
Sbjct: 11 WVEKYRPRKVKDVAHQEEVVRTLTNTLETGNLPHLLFYGPPGTGKTTTALAICHQLFGPE 70
Query: 75 -YREAVMELNASDDRGIDVVRNKIKMFAQKKVT-----LPPGKHKVVVLDEADSMTAGAQ 128
Y+ V+ELNASDDRGI+VVR KIK FA V P KV++LDEADSMT AQ
Sbjct: 71 LYKTRVLELNASDDRGINVVRTKIKDFAGVAVGAGVSGYPCPPFKVLILDEADSMTEDAQ 130
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKV 188
ALRRTME YS TRF CN S+IIEP+ SRCA RF L + + +R+ + QEE +
Sbjct: 131 NALRRTMENYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLLENVMQNRIQYICQEEGL 190
Query: 189 PYVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMVRNV 247
E L + ++GD+R+A+ LQ + ++ + + V ++ +++
Sbjct: 191 KLDQEALSTLSRVSEGDLRRAITCLQCAVRLYGSNISSKEIISVSGIVPDSVLEGLLKAC 250
Query: 248 LEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFMKEAGFAHMRICD 306
G+FD A ++ + G+ + I++ LF ++++ +++ K + + D
Sbjct: 251 QSGQFDLAHQEVRDIIAEGHPVSQILSQLFDFVVQSPNISDIQKARITERLAETDKCLID 310
Query: 307 GVGSYLQL 314
G YLQL
Sbjct: 311 GADEYLQL 318
>gi|194761822|ref|XP_001963122.1| GF15785 [Drosophila ananassae]
gi|190616819|gb|EDV32343.1| GF15785 [Drosophila ananassae]
Length = 332
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/320 (35%), Positives = 183/320 (57%), Gaps = 4/320 (1%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
A +PWVEKYRP+ + D++ + + ++ + +P+L+ GPPGTGKT++ILA A +
Sbjct: 8 AVRMPWVEKYRPSGLDDLISHEEIISTISRFISRKQLPHLLFYGPPGTGKTSTILACARQ 67
Query: 70 LLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQ 128
L P ++ V+ELNASDDRGI +VR +I FA + T+ K+++LDEAD+MT AQ
Sbjct: 68 LYSPQQFKSMVLELNASDDRGIGIVRGQILNFASTR-TIFCDTFKLIILDEADAMTNDAQ 126
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKV 188
ALRR +E Y+++ RF + CN SKII +QSRC RF+ LS ++++ RL ++ E V
Sbjct: 127 NALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSPDQMMPRLEKIIDAEAV 186
Query: 189 PYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVL 248
+G A++ A GDMR+ LN LQ+T F VN++NV+ P ++ +++ +L
Sbjct: 187 QITEDGKRALLTLAKGDMRKVLNVLQSTVMAFDKVNEDNVYTCVGYPLRQDIEQILKALL 246
Query: 249 EGK-FDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICD 306
G +D+ ++ Y G + DI+T L + E+ + + + + R+
Sbjct: 247 SGNSVEDSFKTVENAKYARGLALEDILTELHLFVMRLELPMSVMNKLIVKLAQIEERLAK 306
Query: 307 GVGSYLQLCGLLAKLSIVRE 326
G Q L+A I R+
Sbjct: 307 GCTEPAQTAALVAAFFICRD 326
>gi|74150977|dbj|BAE27622.1| unnamed protein product [Mus musculus]
Length = 370
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/301 (39%), Positives = 175/301 (58%), Gaps = 14/301 (4%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS + +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 27 GSSGETKKVKPVPWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTS 86
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP +R V+ELNASD+RGI VVR K+K FAQ V+ PP
Sbjct: 87 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--F 144
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD
Sbjct: 145 KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD 204
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFK 230
+ RL+ + ++E V E + ++ ++GD+R+A+ LQ+ +G + V+++ +
Sbjct: 205 KIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITD 264
Query: 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLF-RIIKNYEMAEHL 289
+ + + G FD + +K L D G++ T ++ L II+N +++
Sbjct: 265 IAGVIPAATIDGIFTACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKH 324
Query: 290 K 290
K
Sbjct: 325 K 325
>gi|410075631|ref|XP_003955398.1| hypothetical protein KAFR_0A08290 [Kazachstania africana CBS 2517]
gi|372461980|emb|CCF56263.1| hypothetical protein KAFR_0A08290 [Kazachstania africana CBS 2517]
Length = 332
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/324 (34%), Positives = 181/324 (55%), Gaps = 8/324 (2%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
+ S ++PWVEKYRP + D+ G + V + +G +P+L+ GPPGTGKT++I+
Sbjct: 2 NGSKDRSNLPWVEKYRPVTLDDVYGQKEIVGTVRKFVEEGKLPHLLFYGPPGTGKTSTII 61
Query: 65 ALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
ALA E+ G NY V+ELNASDDRGIDVVRN+IK FA + G K+++LDEAD+MT
Sbjct: 62 ALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKG-FKLIILDEADAMT 120
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALRR +E Y+ +TRF + N + K+ + SRC RF L + I +R+ V+
Sbjct: 121 NAAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPSDAIETRIANVLV 180
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQEN-----VFKVCDQPHPLH 239
E + A++ + GDMR+ LN LQA+ + + E +++ P P
Sbjct: 181 HENLKLNDTAKRALLDLSKGDMRRVLNVLQASRATLDDPSNEEITDDIIYECVGAPRPED 240
Query: 240 VKNMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMA-EHLKLEFMKEA 297
++ +++++LE + A L ++ + G + D+I + +I++ YE+ E ++E +
Sbjct: 241 LETVLKSILEDDWSTAYYTLTKVRTMKGLALIDLIEGIVKILEEYELKNEVTRIELLTRL 300
Query: 298 GFAHMRICDGVGSYLQLCGLLAKL 321
G I G +Q ++ +
Sbjct: 301 GDIEYAISKGGNDKIQSSAVIGAI 324
>gi|194700788|gb|ACF84478.1| unknown [Zea mays]
gi|194706416|gb|ACF87292.1| unknown [Zea mays]
gi|413916289|gb|AFW56221.1| replication factor C subunit 2 [Zea mays]
Length = 339
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 179/327 (54%), Gaps = 15/327 (4%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP +V D+ + + L + ++P+++ GPPGTGKTT+ LA+A++L GP
Sbjct: 10 PWVEKYRPRQVKDVAHQEEVIRVLNNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGP 69
Query: 74 N-YREAVMELNASDDRGIDVVRNKIKMFAQ------KKVTLPPGKHKVVVLDEADSMTAG 126
Y+ V+ELNASDDRGI+VVR KIK FA +K P +K+++LDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGTARKAGYPCPPYKIIILDEADSMTED 129
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
AQ ALRRT E YS TRF CN S+IIEP+ SRCA RF LS+E + SR+M + EE
Sbjct: 130 AQNALRRTTETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRIMHICNEE 189
Query: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH-VKNMVR 245
+ + + + + GD+R+A+ LQ+ F + P VK+++
Sbjct: 190 GLNLNAQAMSTLSVISQGDLRRAITYLQSAARLFGSSISSSDLISVSGVIPEDVVKSLLA 249
Query: 246 NVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRI 304
G+FD A + + GY + ++ +I + ++ + K K+ G +
Sbjct: 250 ACRSGEFDVANKEVSSIIADGYPVSQLMAQFLDVIVSADDIPDDQKARICKKLGETDKCL 309
Query: 305 CDGVGSYLQLCGLLAKLSIVRETAKAV 331
DG YLQL L + ET +++
Sbjct: 310 VDGADEYLQL------LDVASETIRSL 330
>gi|389594993|ref|XP_003722719.1| putative replication factor C, subunit 3 [Leishmania major strain
Friedlin]
gi|323363947|emb|CBZ12953.1| putative replication factor C, subunit 3 [Leishmania major strain
Friedlin]
Length = 364
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/340 (35%), Positives = 180/340 (52%), Gaps = 21/340 (6%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
+ ++A +PWVEKYRP+ + +V + D ++ L + GNMP+L+L GPPGTGKTT+I A
Sbjct: 10 AKAAASHLPWVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKA 69
Query: 66 LAHELLG-PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTL---------------PP 109
A+ L G R V+E+NASDDRGIDVVR + + FA P
Sbjct: 70 CAYYLYGKARVRANVLEMNASDDRGIDVVRQQTREFASTSSIFSMMGTGSSTGGGSGGPA 129
Query: 110 GKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSR 169
K K+V+LDEAD M+ AQ ALRR +E Y+ + RF + CN +KII +QSRC RF+
Sbjct: 130 AKFKLVILDEADQMSHDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAP 189
Query: 170 LSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVF 229
+ ++ RL V ++E V Y +GL A + GD+R+ LN +QA+ + +E+V+
Sbjct: 190 VKKSSMMPRLRYVAEQEGVKYTTDGLAAAFRLSHGDLRRCLNTMQASALSANEITEESVY 249
Query: 230 KVCDQPHPLHVKNMVRNVLEGKFDDACSGLK---QLYDLGYSPTDIITTLFRIIKNYEMA 286
+V P P V +V ++L F A S +K + G S D+ + ++ ++
Sbjct: 250 RVTGNPTPADVTAIVSDMLSSDF--ATSWVKAEESVVQKGISMADLTREIHPVMMAMDLP 307
Query: 287 EHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRE 326
+ K + + G L GLL +V+E
Sbjct: 308 QDCKCFLLMKLSDLEYYAAGGARESAVLGGLLGAFQLVKE 347
>gi|323454913|gb|EGB10782.1| hypothetical protein AURANDRAFT_71065 [Aureococcus anophagefferens]
Length = 747
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/321 (37%), Positives = 181/321 (56%), Gaps = 7/321 (2%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP+ + ++V + D ++ L + +P+ +L GPPGTGKT++ILA A ++ G
Sbjct: 426 PWVEKYRPSSLDELVAHKDIISVLRRLIEADKLPHTLLYGPPGTGKTSTILAAAKDMYGA 485
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
Y+ +ELNASDDRGIDVVR++IK FA + G K+++LDEAD MT AQ ALRR
Sbjct: 486 GYKSMTLELNASDDRGIDVVRDQIKEFAGTRRLFSKGI-KLIILDEADMMTKDAQFALRR 544
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
+E Y+ + RF L CN ++KII +QSRC RF+ L+ ++I R+ +V+ E V +
Sbjct: 545 VIEKYTANARFCLICNYANKIIPALQSRCTKFRFAPLAPDQIAGRVADIVRRENVAIGTK 604
Query: 194 GLEAIIFTADGDMRQALNNLQA---TYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+A++ GDMR+ LN LQA Y G V E++F V P P HV + ++L
Sbjct: 605 ATDALLELGKGDMRRVLNVLQAAAVAYPG--EVTYESLFLVTGNPLPDHVDAIFASLLND 662
Query: 251 KFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
FD A + L L GY+ D++T + + ++ K + + R
Sbjct: 663 TFDAARTLLGDLCKTQGYALPDLLTRINAKVVAAKLPNAAKAHVLTKLADIEYRCAFATT 722
Query: 310 SYLQLCGLLAKLSIVRETAKA 330
+ LQL L++ + R A A
Sbjct: 723 TELQLSSLVSAFVVARGLAPA 743
>gi|374635888|ref|ZP_09707477.1| transcriptional regulator, XRE family [Methanotorris formicicus
Mc-S-70]
gi|373560850|gb|EHP87100.1| transcriptional regulator, XRE family [Methanotorris formicicus
Mc-S-70]
Length = 1300
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 110/243 (45%), Positives = 156/243 (64%), Gaps = 6/243 (2%)
Query: 82 LNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQALRRTMEIYS 139
L+ SD+RGIDV+R K+K FA+ K P G K++ LDE+D++T+ AQ ALRRTME YS
Sbjct: 1056 LHNSDERGIDVIRTKVKDFARTK---PIGDVPFKIIFLDESDALTSDAQNALRRTMEKYS 1112
Query: 140 NSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAII 199
+ RF L+CN SKII PIQSRCAI RFS L E+++ +L + ++E + PEGLEAII
Sbjct: 1113 DICRFILSCNYPSKIIPPIQSRCAIFRFSPLKKEDVVKKLKEIAEKEGLTLTPEGLEAII 1172
Query: 200 FTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGL 259
+ ++GDMR+A+N LQ S + +++E V+KV + P +K M+ LEGKF +A L
Sbjct: 1173 YVSEGDMRKAINVLQTAASVSKEIDEEVVYKVSSRARPEEIKKMIELALEGKFIEARELL 1232
Query: 260 -KQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLL 318
K + D G S D+I +FR I + + E K+E ++ G RI +G +QL LL
Sbjct: 1233 YKLMVDWGMSGEDVILQIFREIPSLNIDERKKVELVEALGECDYRIVEGANERIQLSALL 1292
Query: 319 AKL 321
AK+
Sbjct: 1293 AKM 1295
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
PWVEKYRP + ++VG+ + V RL +MP+L+ +GPPG GK
Sbjct: 4 PWVEKYRPKTLDEVVGHEEIVKRLKKYVEKKSMPHLLFSGPPGVGK 49
>gi|254568858|ref|XP_002491539.1| Subunit of heteropentameric Replication factor C (RF-C)
[Komagataella pastoris GS115]
gi|238031336|emb|CAY69259.1| Subunit of heteropentameric Replication factor C (RF-C)
[Komagataella pastoris GS115]
gi|328351952|emb|CCA38351.1| Replication factor C subunit 2 [Komagataella pastoris CBS 7435]
Length = 324
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 118/328 (35%), Positives = 187/328 (57%), Gaps = 29/328 (8%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP K+ ++ + + L + NMP+L+ GPPGTGKT++ILA+A EL GP
Sbjct: 4 PWVEKYRPKKLDEVSAQSNVIRVLSNQLKSANMPHLLFYGPPGTGKTSTILAMARELFGP 63
Query: 74 NY-REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK---------HKVVVLDEADSM 123
+ V+ELNASD+RGI +VR+K+K FA+ VT P + +K+++LDEADSM
Sbjct: 64 QLMKSRVLELNASDERGISIVRDKVKNFARLSVTNPTPEDKENYPCPPYKLIILDEADSM 123
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
T AQ ALRR ME YS+ TRF + CN ++II+PI SRC+ RFS L+ L+ L ++
Sbjct: 124 TFDAQSALRRIMENYSHITRFCIICNYITRIIDPITSRCSKFRFSPLNSANSLATLKMIS 183
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNM 243
Q E++ + L I+ ++GD+R+++N LQ + F + EN+ + Q N+
Sbjct: 184 QSEELDIDDDSLTQILDISNGDLRKSINFLQTGHKLFGEDSIENIAGLIPQ-------NL 236
Query: 244 VRNVLEGKFDDACSGLKQLYDL-------GYSPTDIITTLFR--IIKNYEMAEHLKLEFM 294
V++++E L ++Y+ Y+ I+T+L ++KN + K+E
Sbjct: 237 VQSLIETL---QSKNLNKIYEFLYMLVLKSYNSATILTSLHSCLLLKNIYLNSEQKIEVS 293
Query: 295 KEAGFAHMRICDGVGSYLQLCGLLAKLS 322
+ ++ G ++Q+ L +LS
Sbjct: 294 RILYETDSKLSSGSDEFIQMLNLFLQLS 321
>gi|385804979|ref|YP_005841379.1| replication factor C small subunit [Haloquadratum walsbyi C23]
gi|339730471|emb|CCC41810.1| replication factor C small subunit [Haloquadratum walsbyi C23]
Length = 649
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 105/254 (41%), Positives = 157/254 (61%), Gaps = 3/254 (1%)
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
+ G +++ ++ELNASD+RGIDVVR++IK FA+ + H+++ LDEADS+T AQ
Sbjct: 395 VYGDDWQNNLLELNASDERGIDVVRDRIKNFARS--SFGGYDHRIIFLDEADSLTDDAQS 452
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRRTME ++++TRF L+CN SSKII+PIQSRCA+ RFS LS+ I + + E +
Sbjct: 453 ALRRTMEQFADNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSETAIRGQTKDIAAAENIE 512
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
+GL+A+++ A GDMR+A+N+LQA + V++E V+ + P ++ MV ++
Sbjct: 513 LTEDGLDALVYAAGGDMRRAINSLQAAATTGEVVDEETVYTITSTARPEDIETMVTAAID 572
Query: 250 GKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGV 308
G F A S L+ L D G + DII L R N ++ E + ++ G A RI G
Sbjct: 573 GDFTTARSQLQTLLVDTGMAGGDIIDQLHRTAWNLDLDEETTVRLLERVGEADYRITVGA 632
Query: 309 GSYLQLCGLLAKLS 322
+QL LLA L+
Sbjct: 633 NEQVQLEALLASLA 646
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARL-GIIARDGNMPNLILAGPPGTGK 59
W+EKYRP + +I G D V RL I RD ++P+L+ AGP G GK
Sbjct: 17 WIEKYRPATLENIYGQEDTVDRLQSYIDRD-DLPHLLFAGPAGVGK 61
>gi|110669521|ref|YP_659332.1| replication factor C small subunit I [Haloquadratum walsbyi DSM
16790]
gi|121684598|sp|Q18E75.1|RFCS_HALWD RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
Contains: RecName: Full=Hwa RFC intein
gi|109627268|emb|CAJ53758.1| replication factor C small subunit [Haloquadratum walsbyi DSM
16790]
Length = 649
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 105/254 (41%), Positives = 157/254 (61%), Gaps = 3/254 (1%)
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
+ G +++ ++ELNASD+RGIDVVR++IK FA+ + H+++ LDEADS+T AQ
Sbjct: 395 VYGDDWQNNLLELNASDERGIDVVRDRIKNFARS--SFGGYDHRIIFLDEADSLTDDAQS 452
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRRTME ++++TRF L+CN SSKII+PIQSRCA+ RFS LS+ I + + E +
Sbjct: 453 ALRRTMEQFADNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSETAIRGQTKDIAAAENIE 512
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
+GL+A+++ A GDMR+A+N+LQA + V++E V+ + P ++ MV ++
Sbjct: 513 LTEDGLDALVYAAGGDMRRAINSLQAAATTGEVVDEETVYTITSTARPEDIETMVTAAID 572
Query: 250 GKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGV 308
G F A S L+ L D G + DII L R N ++ E + ++ G A RI G
Sbjct: 573 GDFTTARSQLQTLLVDTGMAGGDIIDQLHRTAWNLDLDEETTVRLLERVGEADYRITVGA 632
Query: 309 GSYLQLCGLLAKLS 322
+QL LLA L+
Sbjct: 633 NEQVQLEALLASLA 646
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARL-GIIARDGNMPNLILAGPPGTGK 59
W+EKYRP + +I G D V RL I RD ++P+L+ AGP G GK
Sbjct: 17 WIEKYRPATLENIYGQEDTVDRLQSYIDRD-DLPHLLFAGPAGVGK 61
>gi|45269731|gb|AAS56246.1| YJR068W [Saccharomyces cerevisiae]
Length = 353
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 119/328 (36%), Positives = 179/328 (54%), Gaps = 21/328 (6%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + ++ AV L + N+P+++ GPPGTGKT++ILAL EL GP
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 74 NY-REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH----------KVVVLDEADS 122
+ + ++ELNASD+RGI +VR K+K FA+ V+ P KH K+++LDEADS
Sbjct: 86 DLMKSRILELNASDERGISIVREKVKNFARLTVS-KPSKHDLENYPCPPYKIIILDEADS 144
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MTA AQ ALRRTME YS TRF L CN ++II+P+ SRC+ RF L + RL +
Sbjct: 145 MTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFI 204
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFV-NQENVFKVCDQ------P 235
++E V LE I+ + GD+R+ + LQ+ G +++ + +N+ + P
Sbjct: 205 SEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVP 264
Query: 236 HPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFM 294
H + ++ +V V G FD+ + G+S ++ L I N + K +
Sbjct: 265 HDILIE-IVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQIS 323
Query: 295 KEAGFAHMRICDGVGSYLQLCGLLAKLS 322
R+ +G ++QL LL K+S
Sbjct: 324 WLLFTTDSRLNNGTNEHIQLLNLLVKIS 351
>gi|23271821|gb|AAH23674.1| Rfc5 protein, partial [Mus musculus]
Length = 333
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 113/308 (36%), Positives = 173/308 (56%), Gaps = 3/308 (0%)
Query: 21 PTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL-GPNYREAV 79
P + D++ + D ++ + + +P+L+L GPPGTGKT++ILA A +L + V
Sbjct: 21 PQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMV 80
Query: 80 MELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS 139
+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT AQ ALRR +E ++
Sbjct: 81 LELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRVIEKFT 139
Query: 140 NSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAII 199
+TRF L CN SKII +QSRC RF L+ E ++ RL VVQEE V +G++A++
Sbjct: 140 ENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDGMKALV 199
Query: 200 FTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGL 259
+ GDMR+ALN LQ+T F V +E V+ P + N++ +L F A +
Sbjct: 200 TLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQDFTTAYKNI 259
Query: 260 KQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLL 318
+L L G + DI+T + + + +++ + + R+ G +QL L+
Sbjct: 260 MELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKIQLSSLI 319
Query: 319 AKLSIVRE 326
A + R+
Sbjct: 320 AAFQVTRD 327
>gi|391326181|ref|XP_003737599.1| PREDICTED: replication factor C subunit 4-like [Metaseiulus
occidentalis]
Length = 320
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 116/314 (36%), Positives = 181/314 (57%), Gaps = 8/314 (2%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
D+PWVEKYRP V D+ + V+ L + G++P+L+ GPPGTGKT++ILALA +L
Sbjct: 7 DLPWVEKYRPRTVDDVASQDEVVSVLKKCLQSGDLPHLLFFGPPGTGKTSTILALARDLY 66
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G +R+ V+ELNASD+RGI V+R K+K F+Q ++++V+LDEADSMT AQ AL
Sbjct: 67 GNEFRQKVLELNASDERGISVIREKVKNFSQMTANQGKIRYRIVILDEADSMTRDAQTAL 126
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTME Y+ +TRF L CN +KII P+ SRC+ RF L + ++++L + +E V +
Sbjct: 127 RRTMEKYTKTTRFCLICNYVTKIIPPLNSRCSKFRFRPLPTDVLVNKLDEICTKENVNFR 186
Query: 192 -PEGLEAIIFTADGDMRQALNNLQATYS-GFRFVNQENVFKVCDQPHPLHVKNMVRNVL- 248
+ L+ +I A+GDMR+A+ LQ+ + + +E++ + + N+V +
Sbjct: 187 GSDDLKFLIELAEGDMRRAVTLLQSAHRISAEKITREDIRNIAG----VIPDNVVEQIYT 242
Query: 249 EGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLK-LEFMKEAGFAHMRICDG 307
E D ++ GYS ++T L ++I E E K +++ R+ DG
Sbjct: 243 EPVLDRLTKRMRDFVREGYSGDQLLTQLLQMIIADERIEDTKRAALLEKLAIVEHRMKDG 302
Query: 308 VGSYLQLCGLLAKL 321
+ L L A +
Sbjct: 303 ASELISLQDLAATI 316
>gi|357137885|ref|XP_003570529.1| PREDICTED: replication factor C subunit 5-like [Brachypodium
distachyon]
Length = 358
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 116/328 (35%), Positives = 185/328 (56%), Gaps = 11/328 (3%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
S++++ PWVEKYRP + D+ + D V + + + +P+L+L GPPGTGKT++IL
Sbjct: 27 SAAAAVRSSPWVEKYRPQSLADVAAHRDIVDTIDRLTDENRLPHLLLYGPPGTGKTSTIL 86
Query: 65 ALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH---KVVVLDEAD 121
A+A ++ G Y ++ELNASD+RGI VVR +I+ FA +L G K+V+LDEAD
Sbjct: 87 AVARKIYGSQYGNMILELNASDERGIGVVRQQIQDFASAH-SLSFGAKPAVKLVLLDEAD 145
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
+MT AQ ALRR +E Y+ STRFAL CN +KII +QSRC RF+ L + RL
Sbjct: 146 AMTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVSERLQH 205
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+++ E + GL A++ + GDMR+ALN LQ+T+ + + +E V+ P P ++
Sbjct: 206 IIKSEGLDVDEGGLTALVRLSSGDMRKALNILQSTHMASQQITEEAVYLCTGNPMPKDIE 265
Query: 242 NMVRNVLEGKFDDACSGLKQLYDL----GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEA 297
+ +L F + K + D+ G + DII + + +M +++++ + +
Sbjct: 266 QIAFWLLNEPF---STSFKYISDMKMRKGLALIDIIREVTMFVFKIKMPCNVRVKLINDL 322
Query: 298 GFAHMRICDGVGSYLQLCGLLAKLSIVR 325
R+ LQL L++ + R
Sbjct: 323 ADIEYRLTFACNDKLQLGALISTFTSAR 350
>gi|398365131|ref|NP_012602.3| Rfc2p [Saccharomyces cerevisiae S288c]
gi|730502|sp|P40348.1|RFC2_YEAST RecName: Full=Replication factor C subunit 2; Short=Replication
factor C2; AltName: Full=Activator 1 41 kDa subunit
gi|498463|dbj|BAA05858.1| Rfc2 protein [Saccharomyces cerevisiae]
gi|841464|gb|AAC49061.1| Rfc2p [Saccharomyces cerevisiae]
gi|1015747|emb|CAA89596.1| RFC2 [Saccharomyces cerevisiae]
gi|1019690|gb|AAB39294.1| ORF YJR068w [Saccharomyces cerevisiae]
gi|285812957|tpg|DAA08855.1| TPA: Rfc2p [Saccharomyces cerevisiae S288c]
gi|392298494|gb|EIW09591.1| Rfc2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 353
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 119/328 (36%), Positives = 179/328 (54%), Gaps = 21/328 (6%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + ++ AV L + N+P+++ GPPGTGKT++ILAL EL GP
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 74 NY-REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH----------KVVVLDEADS 122
+ + ++ELNASD+RGI +VR K+K FA+ V+ P KH K+++LDEADS
Sbjct: 86 DLMKSRILELNASDERGISIVREKVKNFARLTVS-KPSKHDLENYPCPPYKIIILDEADS 144
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MTA AQ ALRRTME YS TRF L CN ++II+P+ SRC+ RF L + RL +
Sbjct: 145 MTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFI 204
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFV-NQENVFKVCDQ------P 235
++E V LE I+ + GD+R+ + LQ+ G +++ + +N+ + P
Sbjct: 205 SEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVP 264
Query: 236 HPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFM 294
H + ++ +V V G FD+ + G+S ++ L I N + K +
Sbjct: 265 HDILIE-IVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQIS 323
Query: 295 KEAGFAHMRICDGVGSYLQLCGLLAKLS 322
R+ +G ++QL LL K+S
Sbjct: 324 WLLFTTDSRLNNGTNEHIQLLNLLVKIS 351
>gi|260939858|ref|XP_002614229.1| hypothetical protein CLUG_05714 [Clavispora lusitaniae ATCC 42720]
gi|238852123|gb|EEQ41587.1| hypothetical protein CLUG_05714 [Clavispora lusitaniae ATCC 42720]
Length = 339
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 146/229 (63%), Gaps = 18/229 (7%)
Query: 9 SAYD------IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
S+YD PWVEKYRP K+ D+ AV L + N+P+++ GPPGTGKT++
Sbjct: 2 SSYDQERLDHTPWVEKYRPKKLDDVASQDHAVRVLQKTLQSANLPHMLFYGPPGTGKTST 61
Query: 63 ILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK---------H 112
+LALA +L GP YR V+ELNASD+RGI +VR KIK FA+ V+ P + +
Sbjct: 62 VLALAKQLYGPRLYRSRVLELNASDERGISIVRQKIKNFARLTVSNPSPEDLREYPCPPY 121
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+++LDEADSMT AQ ALRRTME YS TRF L CN ++II+P+ SRC+ RF L
Sbjct: 122 KIIILDEADSMTNDAQSALRRTMENYSGVTRFCLICNYITRIIDPLASRCSKFRFRSLDG 181
Query: 173 EEILSRLMVVVQEEKVPYVPEG-LEAIIFTADGDMRQALNNLQ-ATYSG 219
E LSRL VV++E +P + L I+ + GD+R+A+ LQ AT SG
Sbjct: 182 ENALSRLRYVVEQEHIPLASDSVLNDILAVSGGDLRKAITYLQSATRSG 230
>gi|195481163|ref|XP_002101540.1| GE15569 [Drosophila yakuba]
gi|194189064|gb|EDX02648.1| GE15569 [Drosophila yakuba]
Length = 353
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 114/314 (36%), Positives = 180/314 (57%), Gaps = 10/314 (3%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP V D+V + VA L G++PN++L GPPGTGKT++ILA + ++ G
Sbjct: 31 PWVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFGD 90
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVT--LPPGK----HKVVVLDEADSMTAGA 127
+++ ++ELNASD+RGI+VVR KIK F+Q + P GK K+++LDEADSMT A
Sbjct: 91 MFKDRILELNASDERGINVVRTKIKNFSQLSASSVRPDGKPCPPFKIIILDEADSMTHAA 150
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
Q ALRRTME S STRF L CN S+II PI SRC+ RF L D++++ RL + E
Sbjct: 151 QSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGDDKVIDRLKYICAMEG 210
Query: 188 VPYVPEGLEAIIFTADGDMRQALNNLQATY---SGFRFVNQENVFKVCDQPHPLHVKNMV 244
V + ++I+ + GD+R+A+ LQ+ Y +N ++F++ ++++ +
Sbjct: 211 VKIEEDAYKSIVKISGGDLRRAITTLQSCYRLKGPEHIINTADLFEMSGVIPEYYLEDYL 270
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHMR 303
G ++ ++++ YS ++ + ++ + + K + + G R
Sbjct: 271 EVCRSGNYERLEQFVREIGFSAYSVGQMMEQFVEFVVHHPGLNDPQKAKICDKLGECCFR 330
Query: 304 ICDGVGSYLQLCGL 317
+ DG YLQ+ L
Sbjct: 331 LQDGGSEYLQIMDL 344
>gi|332021958|gb|EGI62288.1| Replication factor C subunit 4 [Acromyrmex echinatior]
Length = 356
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 177/329 (53%), Gaps = 15/329 (4%)
Query: 6 SSSSAYD-----IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
S+S A D PWVEKYRP V DIV + V + G+ PN++ GPPGTGKT
Sbjct: 21 STSQAKDNKKDLTPWVEKYRPKNVNDIVEQTEVVNVIRQAMEHGDFPNMLFYGPPGTGKT 80
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTL--PPGKH----KV 114
+ I A A ++ G Y++ ++ELNASDDRGI VVR KIK FA ++ P GK K+
Sbjct: 81 SIIHAAARQMFGSMYKDRILELNASDDRGIQVVREKIKSFALRRANPNGPDGKKCPPFKI 140
Query: 115 VVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEE 174
++LDEADSMT AQ ALRR ME S+STRF L CN S+II+PI SRC RF LSDE+
Sbjct: 141 IILDEADSMTGAAQTALRRIMEKESHSTRFCLVCNYLSRIIKPIASRCTKFRFKPLSDEK 200
Query: 175 ILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRF-VNQENVFKV 231
++RL + EE + LE I+ + GD+RQA+ LQ+ G + + ++ V
Sbjct: 201 SIARLEYICNEENLKADKSVLEKIVEASGGDLRQAVMCLQSITRLKGKDYEITADDALDV 260
Query: 232 CDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLF-RIIKNYEMAEHLK 290
+ + +G + + L+ L GY +I L RII + E+ + K
Sbjct: 261 IGLIPDEQINILWEACKKGNYINVQKSLENLLLEGYPGAKVIEQLNERIIFSDELTDKQK 320
Query: 291 LEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
G R+ +G Y+QL + +
Sbjct: 321 AIIGDVLGECDFRLTEGSDEYIQLLNVFS 349
>gi|242770327|ref|XP_002341956.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
stipitatus ATCC 10500]
gi|218725152|gb|EED24569.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
stipitatus ATCC 10500]
Length = 399
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 181/340 (53%), Gaps = 34/340 (10%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + ++ G+ D +A + +P+L+L GPPGTGKTT+ILALA +
Sbjct: 44 NLPWVEKYRPNSLDEVQGHQDILATINRFIDSHRLPHLLLYGPPGTGKTTTILALARRIY 103
Query: 72 G-PNYREAVMELNASDDRGIDVVRNKIKMFAQKK----VTLPPGKH------KVVVLDEA 120
G N R+ V+ELNASDDRGIDVVR +IK FA K V P K K+++LDEA
Sbjct: 104 GIKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSVAAPAAKENSLGAFKLIILDEA 163
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D+MTA AQ ALRR ME Y+ +TRF + N + K+ + SRC RFS L + +I S +
Sbjct: 164 DAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEADIRSLVD 223
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSG-----------------FRFV 223
V++ E V PE E+++ + GDMR+ALN LQA ++ +
Sbjct: 224 KVIEAENVRIQPEATESLVRLSKGDMRRALNVLQACHASSIPLPMRNAPKDQPSPEHELI 283
Query: 224 NQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDL----GYSPTDIITTLFRI 279
++ PHP ++ ++ +L D S L + L G + DI++ L
Sbjct: 284 TDATIYNCIAAPHPSDIREIMTTLLSTS--DVISCLNTINTLKTSKGLALADILSALGEQ 341
Query: 280 IKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
++ E+ ++ +++ R+ G +Q GL+
Sbjct: 342 LQTLEVPAQTRISWLEGLAEVEWRLSGGGSEMVQTGGLVG 381
>gi|116205575|ref|XP_001228598.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88176799|gb|EAQ84267.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 389
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 119/341 (34%), Positives = 179/341 (52%), Gaps = 34/341 (9%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + D+ G+ D +A + +P+L+L GPPGTGKT++ILALA + G
Sbjct: 43 LPWVEKYRPVSLADVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYG 102
Query: 73 P-NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH---------KVVVLDEADS 122
N R+ V+ELNASDDRGIDVVR +IK FA K G K+++LDEAD+
Sbjct: 103 SENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTMGASASRTGIAGFKLIILDEADA 162
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT AQ ALRR ME Y+ +TRF + N S K+ + SRC RFS L +++I + V
Sbjct: 163 MTNTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEQDIRVLVDKV 222
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF------------------RFVN 224
++EE V +PE EA++ + GDMR+ALN LQA ++ +
Sbjct: 223 IEEETVKIIPEATEALVRLSKGDMRRALNVLQACHASSTPLQPRDAPKIPEKDIVRETIT 282
Query: 225 QENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDL----GYSPTDIITTLFRII 280
+ ++ P P +K ++ +L D S L + L G + DIIT L +
Sbjct: 283 TQTIYNCVAAPPPDAIKKILGTLLSTS--DVTSCLSTINTLKVAQGLALADIITALSDEL 340
Query: 281 KNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKL 321
E+ + + ++++ R+ G +Q ++ +
Sbjct: 341 TKLEVKPQVMITWLEKLAEVEHRVSSGSNEAIQTSAVVGAI 381
>gi|401429678|ref|XP_003879321.1| putative replication factor C, subunit 3 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495571|emb|CBZ30876.1| putative replication factor C, subunit 3 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 364
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 116/338 (34%), Positives = 181/338 (53%), Gaps = 17/338 (5%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
+ ++A +PWVEKYRP+ + +V + D ++ L + GNMP+L+L GPPGTGKTT+I A
Sbjct: 10 AKAAASHLPWVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKA 69
Query: 66 LAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTL---------------PP 109
A+ L G + R V+E+NASDDRGIDVVR + + FA P
Sbjct: 70 CAYYLYGKDRVRANVLEMNASDDRGIDVVRQQTREFASTSSIFSMMGSGSSTGSGGGGPA 129
Query: 110 GKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSR 169
K K+V+LDEAD M+ AQ ALRR +E Y+ + RF + CN +KII +QSRC RF+
Sbjct: 130 AKFKLVILDEADQMSYDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAP 189
Query: 170 LSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVF 229
+ ++ RL V ++E V Y +GL A + GD+R+ LN +Q++ + +E+V+
Sbjct: 190 VKKSAMMPRLRYVAEQEGVKYTTDGLAAAFRLSRGDLRRCLNTMQSSALSANEITEESVY 249
Query: 230 KVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYEMAEH 288
+V P P V +V ++L F + +++ + G S D+ + I+ ++ +
Sbjct: 250 RVTGNPTPADVTAIVSDMLSSDFATSWIKVEEGVLQKGISMADLTREIHPIMMAMDLPQD 309
Query: 289 LKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRE 326
K + + G L GLL +V+E
Sbjct: 310 CKCFLLMKLSDLEYYAAGGARESAGLGGLLGAFQLVKE 347
>gi|303281602|ref|XP_003060093.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458748|gb|EEH56045.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 332
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 120/325 (36%), Positives = 176/325 (54%), Gaps = 14/325 (4%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WVEKYRP+++ D+ + D + +G + ++ +P+L+L GPPGTGKT++ILA+A EL GP
Sbjct: 2 WVEKYRPSRLADVAAHKDIIDTIGRLTKEDKLPHLLLYGPPGTGKTSTILAVAKELYGPA 61
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+ + +ELNASDDRGIDVVRN+I+ FA G K+++LDE DSMT AQ ALRR
Sbjct: 62 FAQMTLELNASDDRGIDVVRNEIQSFASTMRFNATG-FKLIILDECDSMTKDAQFALRRV 120
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
+E Y+ TRF L N SKII +QSRC RF+ L E + R+ VV E V EG
Sbjct: 121 IEKYTKHTRFCLIGNYVSKIIPALQSRCTRFRFAPLGPESVRERVKHVVASEGVEITEEG 180
Query: 195 LEAIIFTADGDMRQALNNLQA-TYSGFR-----------FVNQENVFKVCDQPHPLHVKN 242
L A+ GDMR+ LN LQA +YS + ++ + V+ QP P V+
Sbjct: 181 LAAVQTLGAGDMRRTLNILQARSYSHWSPYDPVGEDPAAPLDADAVYATTGQPRPADVEA 240
Query: 243 MVRNVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAH 301
+ +L F +A + ++++ G + D+ L + M + + E
Sbjct: 241 IAGVLLNEPFAEAVARVEEIKTSRGLALGDVARLLCEYVFRLHMPPTARAALVSEMADVE 300
Query: 302 MRICDGVGSYLQLCGLLAKLSIVRE 326
R+ +QL L+ S +E
Sbjct: 301 HRLAYVTHERMQLLALVGAFSNAKE 325
>gi|307178287|gb|EFN67059.1| Replication factor C subunit 4 [Camponotus floridanus]
Length = 357
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 127/338 (37%), Positives = 187/338 (55%), Gaps = 15/338 (4%)
Query: 6 SSSSAYD-----IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
S+S A D PWVEKYRP V DIV + V + + G+ PN++ GPPGTGKT
Sbjct: 20 STSRAKDDKKDLTPWVEKYRPKNVDDIVEQTEVVNVIRQAMKHGDFPNMLFYGPPGTGKT 79
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTL--PPGKH----KV 114
+ I A A ++ G Y++ ++ELNASDDRGI VVR KIK FA +K P GK K+
Sbjct: 80 SIIHAAARQMFGSMYKDRILELNASDDRGIQVVREKIKSFALRKANPIGPDGKKCPPFKI 139
Query: 115 VVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEE 174
++LDEADSMT AQ ALRR ME ++STRF L CN S+II+PI SRC RF LSDE+
Sbjct: 140 IILDEADSMTGAAQTALRRIMEKEAHSTRFCLVCNYLSRIIKPIASRCTKFRFKPLSDEK 199
Query: 175 ILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRF-VNQENVFKV 231
+SRL + EE + LE I+ + GD+RQA+ LQ+ G + + ++ V
Sbjct: 200 SISRLEYICNEENLKADRSVLEKIVEASGGDLRQAVMCLQSITRLKGKNYEITVDDALDV 259
Query: 232 CDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLF-RIIKNYEMAEHLK 290
+ + +G + + + L+ L GY + +I L ++I + E+++ K
Sbjct: 260 IGLIPDEKINALWEACKKGNYSNVETLLENLLLEGYPGSQVIEQLNEKVIFSDELSDKQK 319
Query: 291 LEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRETA 328
+ G ++ +G YLQL + + + I +++
Sbjct: 320 VIIGDMLGECDYKLTEGSDEYLQLLSIFSTILIAWKSS 357
>gi|453083984|gb|EMF12029.1| replication factor C subunit 3 [Mycosphaerella populorum SO2202]
Length = 399
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 119/348 (34%), Positives = 183/348 (52%), Gaps = 40/348 (11%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + D+ G+ D +A + +P+L+L GPPGTGKT+++LALA + G
Sbjct: 47 LPWVEKYRPNALADVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYG 106
Query: 73 -PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPP------------GKHKVVVLDE 119
N R+ V+ELNASDDRGIDVVR +IK F+ K +K+++LDE
Sbjct: 107 NKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFAGSFDKTRRDDSSIAHYKLIILDE 166
Query: 120 ADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRL 179
AD+MT+ AQ ALRR ME Y+ +TRF + N + K+ + SRC RFS L D +I +
Sbjct: 167 ADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDADIRQLI 226
Query: 180 MVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFR------------------ 221
V+ EE V P ++++ + GDMR+ALN LQA ++
Sbjct: 227 DRVITEENVNIEPTAADSLVTLSKGDMRRALNVLQACHASSTPLHIPGEPVVDDKAIPRD 286
Query: 222 FVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDAC----SGLKQLYDLGYSPTDIITTLF 277
+ QE ++ PHP ++ +++ +L + +C + LK+ L + DI+T L
Sbjct: 287 LITQETIYDCIAAPHPADIQTIMKTLLNTQNVGSCMNTINTLKKAKGLALA--DILTALG 344
Query: 278 RIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVR 325
+ E + ++ +M+ R+ G +Q GL+ IVR
Sbjct: 345 EQLNEVEASAQTRVTWMEGLADIEYRLSGGGSESIQTGGLIG---IVR 389
>gi|154344961|ref|XP_001568422.1| putative replication factor C, subunit 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065759|emb|CAM43533.1| putative replication factor C, subunit 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 364
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 120/338 (35%), Positives = 178/338 (52%), Gaps = 21/338 (6%)
Query: 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH 68
+A +PWVEKYRP+ + +V + D ++ L + GNMP+L+L GPPGTGKTT+I A A+
Sbjct: 13 AASHLPWVEKYRPSTLESVVAHEDILSTLRHLMNSGNMPHLLLYGPPGTGKTTTIKACAY 72
Query: 69 ELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLP---------------PGKH 112
L G + R V+E+NASDDRGIDVVR + + FA K
Sbjct: 73 YLYGKDRVRANVLEMNASDDRGIDVVRQQTREFASTTSIFSVMGSSSSTGSGSGGSAVKF 132
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEAD M+ AQ ALRR +E Y+ + RF L CN +KII +QSRC RF+ +
Sbjct: 133 KLVILDEADQMSHDAQAALRRVIEKYTRNVRFCLLCNHINKIIPALQSRCTRFRFAPVKK 192
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVC 232
++ RL V + E V Y +GL A + GD+R+ LN +QA+ + +E+V++V
Sbjct: 193 SAMMPRLRYVAEHEGVKYTTDGLAAAYRLSQGDLRRCLNTMQASALSANEITEESVYRVT 252
Query: 233 DQPHPLHVKNMVRNVLEGKFDDACSGLKQ---LYDLGYSPTDIITTLFRIIKNYEMAEHL 289
P P V +V ++L F A S +K + G S D+ + ++ ++ +
Sbjct: 253 GNPTPADVTTIVSHMLSSDF--ATSWIKTEEAVTQKGISMADLTREIHPVVMAMDLPQDC 310
Query: 290 KLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRET 327
K + + G L GLL +V+ET
Sbjct: 311 KCFLLMKLSDLEYYAAGGARESAGLGGLLGAFQLVKET 348
>gi|66812244|ref|XP_640301.1| replication factor C subunit [Dictyostelium discoideum AX4]
gi|74855117|sp|Q54ST4.1|RFC5_DICDI RecName: Full=Probable replication factor C subunit 5; AltName:
Full=Activator 1 subunit 5
gi|60468315|gb|EAL66323.1| replication factor C subunit [Dictyostelium discoideum AX4]
Length = 347
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 117/321 (36%), Positives = 176/321 (54%), Gaps = 10/321 (3%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + D++ + D + + + +P+L+ GPPGTGKT++I A+A +L G
Sbjct: 24 LPWVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLYG 83
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQK----KVTLPPGKHKVVVLDEADSMTAGAQ 128
NY V+ELNASDDRGIDVVR +IK FA T+P +K+++LDEADSMT AQ
Sbjct: 84 DNYSRMVLELNASDDRGIDVVREQIKTFASSMFFFNTTVP---YKLIILDEADSMTNIAQ 140
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKV 188
ALRR +E Y+ +TRF + CN KII +QSRC RFS L RL ++++E V
Sbjct: 141 TALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEIIEKENV 200
Query: 189 PYVPEGLEAIIFTADGDMRQALNNLQAT--YSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
+ + A++ GDMR+ LN LQ+ S + +E ++K P P ++ MV
Sbjct: 201 KVDSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGYPMPSDIELMVDW 260
Query: 247 VLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
+L +++A + L G S DII TL + + ++ + + + +
Sbjct: 261 LLNSDYEEAFQNISDLKKKKGLSLNDIIATLQKFVVQIDLDNVILCKLLSHLSDIEYNLS 320
Query: 306 DGVGSYLQLCGLLAKLSIVRE 326
G LQL L+ + R+
Sbjct: 321 IGSSEKLQLGSLVGCFQLSRD 341
>gi|18859927|ref|NP_573245.1| CG8142 [Drosophila melanogaster]
gi|17862532|gb|AAL39743.1| LD35209p [Drosophila melanogaster]
gi|22832754|gb|AAF48768.2| CG8142 [Drosophila melanogaster]
Length = 353
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 114/314 (36%), Positives = 180/314 (57%), Gaps = 10/314 (3%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP V D+V + VA L G++PN++L GPPGTGKT++ILA + ++ G
Sbjct: 31 PWVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFGD 90
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVT--LPPGK----HKVVVLDEADSMTAGA 127
+++ ++ELNASD+RGI+VVR KIK F+Q + P GK K+++LDEADSMT A
Sbjct: 91 MFKDRILELNASDERGINVVRTKIKNFSQLSASSVRPDGKPCPPFKIIILDEADSMTHAA 150
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
Q ALRRTME S STRF L CN S+II PI SRC+ RF L +++++ RL + + E
Sbjct: 151 QSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGEDKVIDRLKYICEMEG 210
Query: 188 VPYVPEGLEAIIFTADGDMRQALNNLQATY---SGFRFVNQENVFKVCDQPHPLHVKNMV 244
V + ++I+ + GD+R+A+ LQ+ Y +N ++F++ ++++ +
Sbjct: 211 VKIEDDAYKSIVKISGGDLRRAITTLQSCYRLKGPEHIINTADLFEMSGVIPEYYLEDYL 270
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHMR 303
G ++ ++++ YS ++ I ++ + + K + G R
Sbjct: 271 EVCRSGNYERLEQFVREIGFSAYSVGQMMEQFVEFIVHHPGLNDPQKATICDKLGECCFR 330
Query: 304 ICDGVGSYLQLCGL 317
+ DG YLQ+ L
Sbjct: 331 LQDGGSEYLQIMDL 344
>gi|344301880|gb|EGW32185.1| DNA replication factor C [Spathaspora passalidarum NRRL Y-27907]
Length = 323
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 171/286 (59%), Gaps = 3/286 (1%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PW+EKYRP + DI G + + + + G +P+L+ GPPGTGKT++I+A+A E+ G
Sbjct: 5 LPWIEKYRPESLDDIYGQQEIITTVHKFIQTGKLPHLLFYGPPGTGKTSTIIAVAREIYG 64
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK-HKVVVLDEADSMTAGAQQAL 131
NY+ V+ELNASDDRGIDVVRN+IK FA + G K+++LDEAD+MT AQ +L
Sbjct: 65 KNYKNMVLELNASDDRGIDVVRNQIKNFASTRQIFNQGNSFKLIILDEADAMTNAAQNSL 124
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RR +E ++ + RF + N S K+ + SRC RF + E I R+ VV+ +E+V
Sbjct: 125 RRIIEKFTKNCRFCILANYSHKLNPALISRCTRFRFHPIDTEAIRERIKVVITKEQVDID 184
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFR-FVNQENVFKVCDQPHPLHVKNMVRNVLEG 250
+ ++A++ + GDMR+ALN LQA + ++ + +++ PHP ++ ++ ++L+
Sbjct: 185 AKAVDALVQLSKGDMRRALNVLQACKAATAGSIDLDMIYECIGAPHPQDIETVLDSILKD 244
Query: 251 KFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMK 295
+ A + + G + D+I I+ NY++ ++ +K
Sbjct: 245 DWTTAYITINKFKTTKGLALIDLIAGFVDILNNYKLNNKTRVGILK 290
>gi|149238019|ref|XP_001524886.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146451483|gb|EDK45739.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 377
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 112/322 (34%), Positives = 180/322 (55%), Gaps = 7/322 (2%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY 75
VEKYRP + ++ G D V + G +P+L+ GPPGTGKT++I+ALA E+ GPNY
Sbjct: 55 VEKYRPENLEEVYGQGDIVNTVRRFVETGKLPHLLFYGPPGTGKTSTIVALAREIYGPNY 114
Query: 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG---KHKVVVLDEADSMTAGAQQALR 132
+ V+ELNASDDRGIDVVRN+IK FA + + K+++LDEAD+MT+ AQ +LR
Sbjct: 115 KNMVLELNASDDRGIDVVRNQIKSFASTRQIFTSASSPQFKLIILDEADAMTSVAQNSLR 174
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R +E ++ + RF + N S K+ + SRC RF + +E I SR+ V+ +EKV P
Sbjct: 175 RIIEKFTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEEAIRSRINNVIIKEKVDITP 234
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGF---RFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
+ L A++ + GDMR++LN LQA + ++ + ++ PHP ++ + ++L+
Sbjct: 235 DALNALLHLSQGDMRRSLNVLQACKAAVNDDETIDIDMIYNCVGAPHPQDIEACLDSILK 294
Query: 250 GKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGV 308
+ A L + + G + D+IT I+ YE+ ++ ++K I G
Sbjct: 295 DDWTTAYLTLTKYKTVNGLALVDLITGFIEILNKYELKPENRVYYLKGLSDIEYGISKGG 354
Query: 309 GSYLQLCGLLAKLSIVRETAKA 330
+Q ++ + E K+
Sbjct: 355 NDRIQSSAIIGVIKQAMELEKS 376
>gi|212541869|ref|XP_002151089.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
marneffei ATCC 18224]
gi|210065996|gb|EEA20089.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
marneffei ATCC 18224]
Length = 397
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 183/339 (53%), Gaps = 33/339 (9%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP+ + ++ G+ D +A + +P+L+L GPPGTGKTT+ILALA +
Sbjct: 43 NLPWVEKYRPSSLDEVQGHQDILATINRFIDSHRLPHLLLYGPPGTGKTTTILALARRIY 102
Query: 72 GP-NYREAVMELNASDDRGIDVVRNKIKMFAQKK----VTLPP-----GKHKVVVLDEAD 121
G N R+ V+ELNASDDRGIDVVR +IK FA K V P G K+++LDEAD
Sbjct: 103 GSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSVAAPAKENSLGAFKLIILDEAD 162
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
+MTA AQ ALRR ME Y+ + RF + N + K+ + SRC RFS L + +I S +
Sbjct: 163 AMTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEVDIRSLVDK 222
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSG-----------------FRFVN 224
V++ E V P+ +E+++ + GDMR+ALN LQA ++ +
Sbjct: 223 VIEAENVRIQPQAIESLVRLSKGDMRRALNVLQACHASSIPLPMRNAPKEQPPPEHELIT 282
Query: 225 QENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDL----GYSPTDIITTLFRII 280
+ ++ PHP ++ ++ +L D S L + L G + DI++ L +
Sbjct: 283 DDTIYNCIAAPHPSDIREIMTTLL--STSDVTSCLNTINTLKMSKGLALADILSALGEQL 340
Query: 281 KNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
+ E+ ++ +++ R+ G +Q GL+
Sbjct: 341 QTLEVPAQTRISWLEGLAEVEWRLSGGGSEMVQTGGLVG 379
>gi|308807567|ref|XP_003081094.1| replication factor C 37 kDa subunit (ISS) [Ostreococcus tauri]
gi|116059556|emb|CAL55263.1| replication factor C 37 kDa subunit (ISS) [Ostreococcus tauri]
Length = 342
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 172/313 (54%), Gaps = 7/313 (2%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP V D+ V L GNMP+ + GPPGTGKTT LA+A +L GP
Sbjct: 17 PWVEKYRPKTVRDVASQEQVVRVLEQALETGNMPHCLFYGPPGTGKTTCALAIAKQLYGP 76
Query: 74 N-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLP-PG----KHKVVVLDEADSMTAGA 127
Y++ V ELNASD+RGI VVR+K+K FA V P PG +K+++LDEAD+MT A
Sbjct: 77 ELYKQRVKELNASDERGISVVRDKVKTFASLAVGAPAPGYPSPPYKILILDEADAMTTDA 136
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
Q A+RR ME YS TRF L CN +KII+PI SRCA RF L+ E + +RL + ++E
Sbjct: 137 QSAMRRMMETYSKVTRFFLLCNYVTKIIDPITSRCAKFRFQPLALETMTTRLKYIAEQES 196
Query: 188 VPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRF-VNQENVFKVCDQPHPLHVKNMVRN 246
+ + A + GDMR+A+ LQ+ F V+ + +V + + ++
Sbjct: 197 LELSDDVFPACSKHSGGDMRKAITLLQSAARLFSGKVDAAGIVEVAGYIPDVKLTTLLDL 256
Query: 247 VLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICD 306
G FD A + ++ + GYS I+ L I+ + ++ +K + + G +
Sbjct: 257 CKSGDFDKAQAHMEDILRDGYSGIKIMDQLSDIVLEADCSDEIKGDIFMKMGEVDRALAQ 316
Query: 307 GVGSYLQLCGLLA 319
G LQL +++
Sbjct: 317 GADEGLQLATVVS 329
>gi|190409543|gb|EDV12808.1| replication factor C subunit 2 [Saccharomyces cerevisiae RM11-1a]
Length = 353
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 119/328 (36%), Positives = 179/328 (54%), Gaps = 21/328 (6%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + ++ AV L + N+P+++ GPPGTGKT++ILAL EL GP
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 74 NY-REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH----------KVVVLDEADS 122
+ + ++ELNASD+RGI +VR K+K FA+ V+ P KH K+++LDEADS
Sbjct: 86 DLMKSRILELNASDERGISIVREKVKNFARLTVS-KPSKHDLENYPCPPYKIIILDEADS 144
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MTA AQ ALRRTME YS TRF L CN ++II+P+ SRC+ RF L + RL +
Sbjct: 145 MTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFI 204
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFV-NQENVFKVCDQ------P 235
++E V LE I+ + GD+R+ + LQ+ +++ + +N+ + P
Sbjct: 205 SEQENVKCDDGVLERILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAGVVP 264
Query: 236 HPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFM 294
H + ++ +V V G FD+ + G+S T ++ L I N + K +
Sbjct: 265 HDILIE-IVEKVKSGDFDEIKKYVNTFMKSGWSATSVVNQLHEYYITNDNFDTNFKNQIS 323
Query: 295 KEAGFAHMRICDGVGSYLQLCGLLAKLS 322
R+ +G ++QL LL K+S
Sbjct: 324 WLLFTTDSRLNNGTNEHIQLLNLLVKIS 351
>gi|156062848|ref|XP_001597346.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980]
gi|154696876|gb|EDN96614.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 390
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 119/347 (34%), Positives = 186/347 (53%), Gaps = 35/347 (10%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + D+ G+ D +A + +P+L+ GPPGTGKT++ILALA + G
Sbjct: 45 LPWVEKYRPDTLEDVSGHQDILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARRIYG 104
Query: 73 P-NYREAVMELNASDDRGIDVVRNKIKMFAQKK-------VTLPPGKHKVVVLDEADSMT 124
P N R+ V+ELNASDDRGI+VVR +IK FA K T+ PG +K+++LDEAD+MT
Sbjct: 105 PKNMRQMVLELNASDDRGIEVVREQIKTFASTKQIFSMNSATVSPGAYKLIILDEADAMT 164
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
+ AQ ALRR ME Y+ +TRF + N + K+ + SRC RFS L + +I + V+
Sbjct: 165 STAQMALRRVMEKYTANTRFCVIANYTHKLSPALLSRCTRFRFSPLKESDIRVLVDKVIM 224
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFR------------------FVNQE 226
EE V E +A++ + GDMR+ALN LQA ++ + +
Sbjct: 225 EENVQINAEATDALVRLSKGDMRRALNVLQACHASSTPIHIKGTPKMEEKDIVRDLITET 284
Query: 227 NVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDL----GYSPTDIITTLFRIIKN 282
++ PHP + ++ +L K D S L+ + + G + DIIT L +
Sbjct: 285 TIYDCIASPHPADISKIMNTIL--KTSDVKSCLQMINAIKSTQGLALADIITALSEELIK 342
Query: 283 YEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRETAK 329
++ + + +++ R+ G +Q ++ +VR+ A+
Sbjct: 343 VDVPASVMITWLQGLAEVEYRLSGGGSEVIQTGAVVG---VVRQGAE 386
>gi|429962476|gb|ELA42020.1| hypothetical protein VICG_00867 [Vittaforma corneae ATCC 50505]
Length = 292
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 116/308 (37%), Positives = 178/308 (57%), Gaps = 21/308 (6%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
+V+KY P + D++GN D + + I D P+L+ GPPGTGKTT LAH L+ P+
Sbjct: 3 FVDKYSPKTIEDVLGNQDVIQVIKDIKDD--FPHLLFTGPPGTGKTT----LAH-LMRPS 55
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+ +ELNASD+RGID +R +K F K V K+V+LDE D +TA AQQALRR
Sbjct: 56 FE--TLELNASDERGIDTIRTTLKSFCHKNVP-----KKLVILDECDHLTAQAQQALRRL 108
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
MEI T+F L CN S+IIEPIQSRCA+++F R+ E RL + E + +G
Sbjct: 109 MEI--TDTKFILICNQISQIIEPIQSRCAVLKFERIPSSEFKHRLREICDAENIKITDDG 166
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
L+A++ + GD+R +L LQ S R V+ + ++K+ P+ +++++ ++ + +
Sbjct: 167 LDAVMNVSYGDIRASLGCLQGISSVKRVVDDDFIYKLNGIPNVKILESIISSIETKEMEK 226
Query: 255 ACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQL 314
A L++L + TDI+ LF+I KN + E +K G +RI +GV S +Q
Sbjct: 227 ALETFHSLWNLKFESTDILDGLFKIAKNQD-----NFELLKIIGKYQLRINEGVNSKVQF 281
Query: 315 CGLLAKLS 322
+ ++S
Sbjct: 282 YSMFNEIS 289
>gi|363740218|ref|XP_003642280.1| PREDICTED: replication factor C subunit 5-like [Gallus gallus]
Length = 347
Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 114/290 (39%), Positives = 168/290 (57%), Gaps = 11/290 (3%)
Query: 43 DGNMPNLILAGPPGTGKTTSILALAHELLGPNYRE-----AVMELNASDDRGIDVVRNKI 97
+ +P+L+L GPPGTGKT++ILA A +L YRE V+ELNASDDRGID+VR I
Sbjct: 57 EDRLPHLLLYGPPGTGKTSTILACARQL----YREREFSSMVLELNASDDRGIDIVRGPI 112
Query: 98 KMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEP 157
FA + G K+V+LDEAD+MT AQ ALRR +E ++ +TRF L CN SKII
Sbjct: 113 LSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPA 171
Query: 158 IQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY 217
+QSRC RF L+ E ++ RL V+QEE V +G++A++ + GDMR+ALN LQ+T
Sbjct: 172 LQSRCTRFRFGPLTPELMVPRLQHVIQEEGVDVSEDGMKALVTLSSGDMRRALNILQSTS 231
Query: 218 SGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTL 276
F V +ENV+ P + N++ +L KF A + +L L G + DI+T +
Sbjct: 232 MAFGKVTEENVYTCTGHPLKADIANILDWMLNQKFSTAYRKIMELKTLKGLALQDILTEI 291
Query: 277 FRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRE 326
+ + ++++ + + R+ G +QL L+A + R+
Sbjct: 292 HLFVHRVDFPPSVRIQLLIKMADIEYRLAAGTSEKVQLSSLIAAFQVTRD 341
>gi|341038392|gb|EGS23384.1| DNA replication factor C-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 388
Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 115/336 (34%), Positives = 177/336 (52%), Gaps = 30/336 (8%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + D+ G+ D +A + +P+L+ GPPGTGKT++ILALA + G
Sbjct: 42 LPWVEKYRPATLSDVSGHQDILATINKFIESNRLPHLLFYGPPGTGKTSTILALARRIYG 101
Query: 73 P-NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH---------KVVVLDEADS 122
N R+ V+ELNASDDRGI+VVR +IK FA K G K+++LDEAD+
Sbjct: 102 AENMRQMVLELNASDDRGIEVVREQIKTFASTKQIFTMGSSAGRAGIAAFKLIILDEADA 161
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT AQ ALRR ME Y+ +TRF + N S K+ + SRC RFS L +++I S + V
Sbjct: 162 MTNTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEQDIRSLVDKV 221
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFR------------------FVN 224
++EE V P+ +E+++ + GDMR+ALN LQA ++ +
Sbjct: 222 IEEENVKITPDAVESLVKLSRGDMRRALNVLQACHASSTPLQLRDGPKIPGDQIVRDTIT 281
Query: 225 QENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDL--GYSPTDIITTLFRIIKN 282
E ++ P P +K ++ +L AC + + + G + DIIT+L +
Sbjct: 282 TETIYNCVAAPPPDAIKKILNTLLSTSDVTACLTIINMLKISQGLALADIITSLSEELVK 341
Query: 283 YEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLL 318
E+ + + ++ R+ G +Q ++
Sbjct: 342 LEVKPQVMITWLDALAEIEYRVASGANEAIQTAAVV 377
>gi|323308474|gb|EGA61719.1| Rfc2p [Saccharomyces cerevisiae FostersO]
Length = 353
Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 118/328 (35%), Positives = 179/328 (54%), Gaps = 21/328 (6%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + ++ AV L + N+P+++ GPPGTGKT++ILAL EL GP
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 74 NY-REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH----------KVVVLDEADS 122
+ + ++ELNASD+RGI +VR K+K+FA+ V+ P KH K+++LDEADS
Sbjct: 86 DLMKSRILELNASDERGISIVREKVKIFARLTVS-KPSKHDLENYPCPPYKIIILDEADS 144
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MTA AQ ALRRTME YS TRF L CN ++II+P+ SRC+ RF L + RL +
Sbjct: 145 MTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFI 204
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFV-NQENVFKVCDQ------P 235
++E V LE I+ + GD+R+ + LQ+ +++ + +N+ + P
Sbjct: 205 SEQENVKCDDGVLEXILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAGVVP 264
Query: 236 HPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFM 294
H + ++ +V V G FD+ + G+S ++ L I N + K +
Sbjct: 265 HDILIE-IVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQIS 323
Query: 295 KEAGFAHMRICDGVGSYLQLCGLLAKLS 322
R+ +G ++QL LL K+S
Sbjct: 324 WLLFTTDSRLNNGTNEHIQLLNLLVKIS 351
>gi|198476564|ref|XP_002132399.1| GA25212 [Drosophila pseudoobscura pseudoobscura]
gi|198137754|gb|EDY69801.1| GA25212 [Drosophila pseudoobscura pseudoobscura]
Length = 333
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 115/324 (35%), Positives = 182/324 (56%), Gaps = 4/324 (1%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
++ +A PWVEKYRP + D++ + + + + +P+L+ GPPGTGKT++ILA
Sbjct: 4 NNETALRKPWVEKYRPYSLDDLISHDEIILTINRFISQKQLPHLLFYGPPGTGKTSTILA 63
Query: 66 LAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
A +L P ++ V+ELNASDDRGI +VR +I FA + T+ K+++LDEAD+MT
Sbjct: 64 CARQLYPPALFKSMVLELNASDDRGIGIVRGQILNFASTR-TIFCDTFKLIILDEADAMT 122
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALRR +E Y+++ RF + CN SKII +QSRC RF+ LS ++++ RL +VQ
Sbjct: 123 NDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLSPDKMIPRLEQIVQ 182
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
E + G +A++ + GDMR+ LN LQ+T F VN++NV+ P ++N++
Sbjct: 183 SEDIKITENGKKALLTLSKGDMRKVLNVLQSTAMAFDVVNEDNVYMCAGYPLRQDIENIL 242
Query: 245 RNVLEG-KFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHM 302
+ +L G F+ + + G + DIIT L I+ E + E + +
Sbjct: 243 KALLSGHNFEVSFQNVDVAKSARGLALEDIITELHLIVMRLEFPISVMNELVVKLAHIEE 302
Query: 303 RICDGVGSYLQLCGLLAKLSIVRE 326
R+ G L++ I R+
Sbjct: 303 RLTKGCTDIANTAALVSAFFICRD 326
>gi|67902154|ref|XP_681333.1| hypothetical protein AN8064.2 [Aspergillus nidulans FGSC A4]
gi|40740496|gb|EAA59686.1| hypothetical protein AN8064.2 [Aspergillus nidulans FGSC A4]
gi|259480821|tpe|CBF73811.1| TPA: subunit of heteropentameric Replication factor (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 398
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 186/340 (54%), Gaps = 34/340 (10%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D+ G+ D +A + +P+L+L GPPGTGKT++ILALA +
Sbjct: 44 NLPWVEKYRPNTLDDVSGHKDILATINRFVEANQLPHLLLYGPPGTGKTSTILALARRIY 103
Query: 72 GP-NYREAVMELNASDDRGIDVVRNKIKMFAQKK--VTLPP---GKH-----KVVVLDEA 120
G N R+ V+ELNASDDRGIDVVR +IK FA K ++ P GK K+++LDEA
Sbjct: 104 GSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSATGKSSLASFKLIILDEA 163
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D+MT+ AQ ALRR ME Y+ +TRF + N + K+ + SRC RFS L +++I +
Sbjct: 164 DAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRVLID 223
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFR-----------------FV 223
V+++E V PE +++++ + GDMR+ALN LQA ++ + +
Sbjct: 224 QVIEKEDVRIQPEAVDSLVTLSRGDMRRALNVLQACHASSKPLPIKNAPQDQAVPEPETI 283
Query: 224 NQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDL----GYSPTDIITTLFRI 279
E ++ PHP ++ +V +L D S L L L G + DI++ L
Sbjct: 284 TNETIYDCIAAPHPADIQQIVTTLLATS--DVTSCLNTLNTLKINKGLALADILSALGEQ 341
Query: 280 IKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319
+ E+ ++ +++ R+ G +Q GL+
Sbjct: 342 LYRLEVPAQTRITWLEGLAEIEWRLSAGGSETVQTGGLVG 381
>gi|50513624|pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/328 (35%), Positives = 179/328 (54%), Gaps = 21/328 (6%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + ++ AV L + N+P+++ GPPGTGKT++ILAL EL GP
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 74 NY-REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH----------KVVVLDEADS 122
+ + ++ELNASD+RGI +VR K+K FA+ V+ P KH K+++LDEADS
Sbjct: 86 DLMKSRILELNASDERGISIVREKVKNFARLTVS-KPSKHDLENYPCPPYKIIILDEADS 144
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MTA AQ ALRRTME YS TRF L CN ++II+P+ S+C+ RF L + RL +
Sbjct: 145 MTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFI 204
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFV-NQENVFKVCDQ------P 235
++E V LE I+ + GD+R+ + LQ+ G +++ + +N+ + P
Sbjct: 205 SEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVP 264
Query: 236 HPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFM 294
H + ++ +V V G FD+ + G+S ++ L I N + K +
Sbjct: 265 HDILIE-IVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQIS 323
Query: 295 KEAGFAHMRICDGVGSYLQLCGLLAKLS 322
R+ +G ++QL LL K+S
Sbjct: 324 WLLFTTDSRLNNGTNEHIQLLNLLVKIS 351
>gi|119598577|gb|EAW78171.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_b [Homo
sapiens]
gi|194386378|dbj|BAG59753.1| unnamed protein product [Homo sapiens]
Length = 303
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 143/223 (64%), Gaps = 11/223 (4%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS + A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 27 GSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 86
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP +R V+ELNASD+RGI VVR K+K FAQ V+ PP
Sbjct: 87 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--F 144
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD
Sbjct: 145 KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD 204
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQA 215
+ RL+ + ++E V EG+ ++ ++GD+R+A+ LQ+
Sbjct: 205 KIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQS 247
>gi|412990439|emb|CCO19757.1| replication factor C small subunit [Bathycoccus prasinos]
Length = 341
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 113/310 (36%), Positives = 180/310 (58%), Gaps = 3/310 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WVEKYRP + +I + D VA + + D +P+L+L GPPGTGKT+ ILALA EL +
Sbjct: 25 WVEKYRPKSLDEIAAHADIVATIRQLTHDKKLPHLLLYGPPGTGKTSIILALARELYSTS 84
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+ + +ELNASD+RGIDVVR +I+ FA G K+V+LDE+DSMT AQ ALRR
Sbjct: 85 FTQMALELNASDERGIDVVREEIQAFASTLRASSFG-FKLVILDESDSMTKDAQFALRRI 143
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
+E Y+ TRF L CN SKII +QSRC R L E+I +++ +V E + EG
Sbjct: 144 IERYTKYTRFCLICNFPSKIIPALQSRCTKFRLEALQFEDIRNKIQLVSSAENLKITEEG 203
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFR-FVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
+ A+ GDMR++LN LQ+ + + ++++ V+ V +P P+++ N+ ++L F
Sbjct: 204 ILAVCRVGCGDMRKSLNILQSAHLASKDVIDEDLVYAVTGKPLPVNMGNLCDSLLTLPFK 263
Query: 254 DACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
+A L + + G + +DI+ + + ++ + EF+++ + +G +
Sbjct: 264 EAVIVLVERKIIEGLTLSDIVEAMMAYVSQLHISSFFRTEFLRQLSEIDRCMTCCMGERI 323
Query: 313 QLCGLLAKLS 322
QL +++ S
Sbjct: 324 QLLTIVSIFS 333
>gi|403216588|emb|CCK71084.1| hypothetical protein KNAG_0G00260 [Kazachstania naganishii CBS
8797]
Length = 350
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 115/328 (35%), Positives = 177/328 (53%), Gaps = 22/328 (6%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + ++ AV L + ++P+++ GPPGTGKT++ILAL EL GP
Sbjct: 24 PWVEKYRPKNLDEVTAQDHAVNVLKKTLKSADLPHMLFYGPPGTGKTSTILALTKELFGP 83
Query: 74 NYREA-VMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH---------KVVVLDEADSM 123
++ V+ELNASD+RGI +VR K+K FA+ V+ P K+++LDEADSM
Sbjct: 84 ELTKSRVLELNASDERGISIVREKVKNFARLTVSKPSKNDLEKYPCPPFKIIILDEADSM 143
Query: 124 TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV 183
TA AQ ALRRTME YS+ TRF L CN ++II+P+ SRC+ RF L + + RL V
Sbjct: 144 TADAQSALRRTMETYSSVTRFCLICNYITRIIDPLASRCSKFRFKSLDESNAMDRLQYVA 203
Query: 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT-----YSGFRFVNQENVFKVCDQPHPL 238
++E V LE I+ + GD+R+A+ LQ++ Y+G V + V ++ +
Sbjct: 204 KQESVICEDGALEKILIVSSGDLRKAITLLQSSSKLRNYTGTDKVTSKQVEELAGRVPND 263
Query: 239 HVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAG 298
+ +V + D + + G+S +I+ L Y M+++ F
Sbjct: 264 ILGELVEKIASKDLDAIIAYVNNFAKSGWSGVSVISQLHDY---YIMSDNFDTAFKNRIS 320
Query: 299 F----AHMRICDGVGSYLQLCGLLAKLS 322
++ +G +LQL L+ ++S
Sbjct: 321 LILFDTDAKLTNGTNEHLQLLNLVVQIS 348
>gi|126458633|ref|YP_001054911.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
gi|158513488|sp|A3MS28.1|RFCS_PYRCJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|126248354|gb|ABO07445.1| Replication factor C [Pyrobaculum calidifontis JCM 11548]
Length = 326
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 172/310 (55%), Gaps = 6/310 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W EKYRP ++V + ARL + GN+P+L+ GPPGTGKTT L LA EL G
Sbjct: 6 WFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQALR 132
+RE +ELNASD+RGI V+R ++K FA+ T P GK K+V+LDEAD+MT+ AQQALR
Sbjct: 66 WRENTLELNASDERGIGVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQALR 122
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R MEIY+ +TRF L N S+II+PI SRCA+ RFS + + RL + + E V
Sbjct: 123 RIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLREIARSEGVELKD 182
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+ ++ I ++GDMR+A+N LQ + + V+ V P V + + G
Sbjct: 183 DAIDLIYEISEGDMRKAINLLQVAAAVSKVVDANAVASAAAAVRPSDVLELFNLAMGGDL 242
Query: 253 DDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A L++L Y G + D+I R + ++ + +K E + R+ G
Sbjct: 243 AKARDKLRELMYIKGVAGVDLIRVFQRELIRMQLDDDVKAEVAELLSEVDYRLTQGADEE 302
Query: 312 LQLCGLLAKL 321
+QL L KL
Sbjct: 303 IQLMYFLMKL 312
>gi|261200183|ref|XP_002626492.1| activator 1 subunit 3 [Ajellomyces dermatitidis SLH14081]
gi|239593564|gb|EEQ76145.1| activator 1 subunit 3 [Ajellomyces dermatitidis SLH14081]
gi|239607557|gb|EEQ84544.1| replication factor C [Ajellomyces dermatitidis ER-3]
gi|327357386|gb|EGE86243.1| replication factor C [Ajellomyces dermatitidis ATCC 18188]
Length = 404
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/334 (35%), Positives = 184/334 (55%), Gaps = 34/334 (10%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++PWVEKYRP + D+ G+ D + + +P+L+L GPPGTGKT++ILALA +
Sbjct: 44 NLPWVEKYRPNTLEDVSGHQDIIGTINRFIDTNRLPHLLLYGPPGTGKTSTILALARRIY 103
Query: 72 G-PNYREAVMELNASDDRGIDVVRNKIKMFAQKK--VTLPP--------GKHKVVVLDEA 120
G N R+ V+ELNASDDRGIDVVR++IK FA K ++ P G K+++LDEA
Sbjct: 104 GVKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSMAPAAKAESTLGAFKLIILDEA 163
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D+MTA AQ ALRR ME Y+ + RF + N S K+ + SRC RFS L +++I +
Sbjct: 164 DAMTAVAQMALRRIMEKYTANARFCIIANYSHKLSPALLSRCTRFRFSPLKEKDIRVLVD 223
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSG-----------------FRFV 223
V++ E+V PE +++++ + GDMR+ALN LQA ++ +
Sbjct: 224 QVIETEQVRIQPEAIDSLVKLSKGDMRRALNVLQACHASSIPLPIKNAPKDQPTPDHETI 283
Query: 224 NQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDL----GYSPTDIITTLFRI 279
E ++ PHP +K ++ +L D S L + L G + DI+T++
Sbjct: 284 TDETIYTCIAAPHPSDIKTIITALLTTS--DVTSCLNTIKTLKSNKGLALADILTSISTE 341
Query: 280 IKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
+++ E+ ++ +M+ R+ G G +Q
Sbjct: 342 LQHIEVPAATRIIWMEGLADIEWRLAGGGGEMVQ 375
>gi|149234968|ref|XP_001523363.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146453152|gb|EDK47408.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 402
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/220 (46%), Positives = 143/220 (65%), Gaps = 15/220 (6%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
+ PWVEKYRP + D+ AV L GN+P+++ GPPGTGKT++ILALA +L
Sbjct: 33 HHTPWVEKYRPKNLDDVASQDHAVKVLKKQISTGNLPHMLFYGPPGTGKTSTILALAKQL 92
Query: 71 LGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK---------HKVVVLDEA 120
GPN Y+ V+ELNASD+RGI +VR KIK FA+ V+ P +K+++LDEA
Sbjct: 93 YGPNLYKSRVLELNASDERGISIVRQKIKNFAKLTVSNPTEDDLRNYPCPPYKIIILDEA 152
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT AQ ALRRTME Y+N TRFAL CN ++II+P+ SRC+ RF L++E L+RL
Sbjct: 153 DSMTNDAQSALRRTMETYANITRFALVCNYITRIIDPLASRCSKFRFKLLNNENSLNRLK 212
Query: 181 VVVQEEKVPYVPEG-----LEAIIFTADGDMRQALNNLQA 215
+ +EE + +G L ++ ++GDMR+A+ LQ+
Sbjct: 213 YIAKEENLHLDEKGAPDEVLNEVLRISNGDMRKAITYLQS 252
>gi|402861875|ref|XP_003895301.1| PREDICTED: replication factor C subunit 4, partial [Papio anubis]
Length = 298
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 143/223 (64%), Gaps = 11/223 (4%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
SS + A +PWVEKYRP V ++ + VA L ++PNL+ GPPGTGKT+
Sbjct: 27 GSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 86
Query: 62 SILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGKH 112
+ILA A EL GP +R V+ELNASD+RGI VVR K+K FAQ V+ PP
Sbjct: 87 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPP--F 144
Query: 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172
K+V+LDEADSMT+ AQ ALRRTME S +TRF L CN S+IIEP+ SRC+ RF LSD
Sbjct: 145 KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD 204
Query: 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQA 215
+ RL+ + ++E V EG+ ++ ++GD+R+A+ LQ+
Sbjct: 205 KIQQQRLLDIAEKENVKISDEGIAYLVKVSEGDLRKAITFLQS 247
>gi|145590269|ref|YP_001152271.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
gi|158514158|sp|A4WGV2.1|RFCS1_PYRAR RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|145282037|gb|ABP49619.1| Replication factor C [Pyrobaculum arsenaticum DSM 13514]
Length = 329
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 116/296 (39%), Positives = 164/296 (55%), Gaps = 6/296 (2%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W EKYRP ++V + ARL R GNMP+L+ GPPGTGKTT L LA EL G
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQALR 132
+RE +ELNASD+RGI+V+R ++K FA+ T P GK K+V+LDEAD+MT+ AQQALR
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQALR 122
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R ME+Y+ +TRF L N S+II+PI SRCA+ RFS + + RL + + E +
Sbjct: 123 RIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLRHIAKSEGIELRD 182
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+ ++ I ++GDMR+A+N LQ + + V+ V P V + G
Sbjct: 183 DAIDLIYEVSEGDMRKAINLLQVAAATSKVVDANAVASATTMIRPADVVELFNLAFNGDV 242
Query: 253 DDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDG 307
A L++L Y G + D I R + + + +K E + R+ G
Sbjct: 243 TKAREKLRELMYVKGIAGIDFIRAFQRELIRMPLDDEVKAEIAELLAEVDYRLTQG 298
>gi|347832701|emb|CCD48398.1| similar to replication factor C subunit 3 [Botryotinia fuckeliana]
Length = 390
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 119/347 (34%), Positives = 185/347 (53%), Gaps = 35/347 (10%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + D+ G+ D +A + +P+L+ GPPGTGKT++ILALA + G
Sbjct: 46 LPWVEKYRPDTLEDVSGHQDILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARRIYG 105
Query: 73 P-NYREAVMELNASDDRGIDVVRNKIK-------MFAQKKVTLPPGKHKVVVLDEADSMT 124
N R+ V+ELNASDDRGIDVVR +IK +FA K + PG +K+++LDEAD+MT
Sbjct: 106 SKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFASKSSSTSPGAYKLIILDEADAMT 165
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
+ AQ ALRR ME Y+ +TRF + N + K+ + SRC RFS L + +I + V+
Sbjct: 166 STAQMALRRVMEKYTANTRFCVIANYTHKLSPALLSRCTRFRFSPLKEADIRVLVDKVIA 225
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFR------------------FVNQE 226
EE V E +A++ + GDMR+ALN LQA ++ + +
Sbjct: 226 EENVQINAEATDALVRLSKGDMRRALNVLQACHASSTPIHIQGTPKLEEKDIVRDLITET 285
Query: 227 NVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDL----GYSPTDIITTLFRIIKN 282
++ PHP + ++ +L K D S L+ + + G + DIIT L +
Sbjct: 286 TIYDCIASPHPADISKIMNTIL--KTTDVKSCLQMINAVKSTQGLALADIITALSEELTK 343
Query: 283 YEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRETAK 329
++ + + +++ R+ G +Q L+ ++RE A+
Sbjct: 344 LDVPASVMITWLQGLAEVEYRLSGGGSEVIQTGALVG---VIREGAE 387
>gi|392567387|gb|EIW60562.1| replication factor C [Trametes versicolor FP-101664 SS1]
Length = 379
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 135/213 (63%), Gaps = 11/213 (5%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + D+ VA L N+P+++ GPPGTGKT++ILALA +L GP
Sbjct: 25 PWVEKYRPKTIEDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFGP 84
Query: 74 -NYREAVMELNASDDRGIDVVRNKIKMFAQKK----------VTLPPGKHKVVVLDEADS 122
N+R V+ELNASD+RGI +VR KIK FA++ P +K+++LDEADS
Sbjct: 85 ENFRSRVLELNASDERGISIVREKIKNFARQTPRAQAVSADGTVYPCPPYKIIILDEADS 144
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MT AQ ALRR ME+Y+ TRF L CN ++IIEP+ SRC+ RF L +R+ V
Sbjct: 145 MTQDAQAALRRIMELYARITRFCLVCNYVTRIIEPLASRCSKFRFKPLDPASTSARIAQV 204
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQA 215
E VP PE ++A+I T+ GD+R+A+ LQ+
Sbjct: 205 ASAENVPVTPETVDALISTSQGDLRRAITYLQS 237
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,869,999,651
Number of Sequences: 23463169
Number of extensions: 195101057
Number of successful extensions: 838677
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7328
Number of HSP's successfully gapped in prelim test: 7073
Number of HSP's that attempted gapping in prelim test: 818655
Number of HSP's gapped (non-prelim): 15953
length of query: 331
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 188
effective length of database: 9,003,962,200
effective search space: 1692744893600
effective search space used: 1692744893600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 77 (34.3 bits)