BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020071
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 323
Score = 410 bits (1054), Expect = e-115, Method: Compositional matrix adjust.
Identities = 194/314 (61%), Positives = 248/314 (78%), Gaps = 5/314 (1%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
+ +PWVEKYRP + DIVGN + + RL IA+DGNMP++I++G PG GKTTS+ LAHE
Sbjct: 6 SLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHE 65
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
LLG +Y + V+ELNASDDRGIDVVRN+IK FAQKK+ LPPGKHK+V+LDEADSMTAGAQQ
Sbjct: 66 LLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQ 125
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRRTME+YSNSTRFA ACN S+KIIEP+QS+CAI+R+S+LSDE++L RL+ +++ E V
Sbjct: 126 ALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVK 185
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
Y +GLEAIIFTA+GDMRQA+NNLQ+T +G VN +NVFK+ D PHPL VK M +L
Sbjct: 186 YTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKM---LLA 242
Query: 250 GKFDDACSGLK-QLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDG 307
+D+ L+ L+ GYS DI+TT FR+ KN ++ E ++LE +KE G HMRI +G
Sbjct: 243 SNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEG 302
Query: 308 VGSYLQLCGLLAKL 321
VG+YLQL +LAK+
Sbjct: 303 VGTYLQLASMLAKI 316
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 275 bits (703), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 143/314 (45%), Positives = 202/314 (64%), Gaps = 6/314 (1%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP ++ DIVG V RL + G+MP+L+ AGPPG GKTT+ LALA EL G
Sbjct: 14 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGE 73
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGAQQAL 131
N+R +ELNASD+RGI+V+R K+K FA+ K P G K++ LDEAD++T AQQAL
Sbjct: 74 NWRHNFLELNASDERGINVIREKVKEFARTK---PIGGASFKIIFLDEADALTQDAQQAL 130
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTME++S++ RF L+CN SSKIIEPIQSRCAI RF L DE+I RL + + E +
Sbjct: 131 RRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT 190
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
EGL+AI++ A+GDMR+A+N LQA + + + ENVF V + P ++ M+ L+G
Sbjct: 191 EEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVASRARPEDIREMMLLALKGN 250
Query: 252 FDDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
F A L++ L G S D++ + + + N + E K+ + G + R+ +G
Sbjct: 251 FLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEYNFRLVEGANE 310
Query: 311 YLQLCGLLAKLSIV 324
+QL LLA+ +++
Sbjct: 311 IIQLEALLAQFTLI 324
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 252 bits (644), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 131/313 (41%), Positives = 197/313 (62%), Gaps = 6/313 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WVEKYRP + ++VG + + RL N+P+L+ +GPPGTGKT + +ALA +L G N
Sbjct: 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN 66
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGAQQALR 132
+R+ +E+NASD+RGIDVVR+KIK FA+ T P G K++ LDEAD++TA AQ ALR
Sbjct: 67 WRDNFIEMNASDERGIDVVRHKIKEFAR---TAPIGGAPFKIIFLDEADALTADAQAALR 123
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME+YS S RF L+CN S+IIEPIQSRCA+ RF + E + RL+ + ++E V
Sbjct: 124 RTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITE 183
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GLEA+I+ + GD R+A+N LQ + V+ + ++++ P + +++ L+G F
Sbjct: 184 DGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTELIQTALKGNF 243
Query: 253 DDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
+A L +L + G S DI+ LFR I + + + LK++ + + G R+ +G
Sbjct: 244 MEARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDKLGEVDFRLTEGANER 303
Query: 312 LQLCGLLAKLSIV 324
+QL LA LS +
Sbjct: 304 IQLDAYLAYLSTL 316
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 215 bits (547), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 105/219 (47%), Positives = 151/219 (68%), Gaps = 5/219 (2%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WVEKYRP + ++VG + + RL N+P+L+ +GPPGTGKT + +ALA +L G N
Sbjct: 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN 66
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGAQQALR 132
+R+ +E+NASD+RGIDVVR+KIK FA+ T P G K++ LDEAD++TA AQ ALR
Sbjct: 67 WRDNFIEMNASDERGIDVVRHKIKEFAR---TAPIGGAPFKIIFLDEADALTADAQAALR 123
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME+YS S RF L+CN S+IIEPIQSRCA+ RF + E + RL+ + ++E V
Sbjct: 124 RTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITE 183
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKV 231
+GLEA+I+ + GD R+A+N LQ + V+ + ++++
Sbjct: 184 DGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQI 222
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 207 bits (526), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 117/339 (34%), Positives = 189/339 (55%), Gaps = 10/339 (2%)
Query: 1 MAXXXXXXXAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
M+ ++PWVEKYRP + ++ G + + + +G +P+L+ GPPGTGKT
Sbjct: 1 MSTSTEKRSKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKT 60
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
++I+ALA E+ G NY V+ELNASDDRGIDVVRN+IK FA + G K+++LDEA
Sbjct: 61 STIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG-FKLIILDEA 119
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
D+MT AQ ALRR +E Y+ +TRF + N + K+ + S+C RF L E I R+
Sbjct: 120 DAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIA 179
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQEN-----VFKVCDQP 235
V+ EK+ P +A+I ++GDMR+ LN LQ+ + +++ +++ C P
Sbjct: 180 NVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAP 239
Query: 236 HPLHVKNMVRNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMA-EHLKLEF 293
P +K +++++LE + A L ++ G + D+I + +I+++YE+ E ++
Sbjct: 240 RPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHL 299
Query: 294 MKEAGFAHMRICDGVGSYLQLCGLLA--KLSIVRETAKA 330
+ + I G +Q ++ K S ET KA
Sbjct: 300 LTKLADIEYSISKGGNDQIQGSAVIGAIKASFENETVKA 338
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/328 (35%), Positives = 179/328 (54%), Gaps = 21/328 (6%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + ++ AV L + N+P+++ GPPGTGKT++ILAL EL GP
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 74 NY-REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH----------KVVVLDEADS 122
+ + ++ELNASD+RGI +VR K+K FA+ V+ P KH K+++LDEADS
Sbjct: 86 DLMKSRILELNASDERGISIVREKVKNFARLTVS-KPSKHDLENYPCPPYKIIILDEADS 144
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
MTA AQ ALRRTME YS TRF L CN ++II+P+ S+C+ RF L + RL +
Sbjct: 145 MTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFI 204
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFV-NQENVFKVCDQ------P 235
++E V LE I+ + GD+R+ + LQ+ G +++ + +N+ + P
Sbjct: 205 SEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVP 264
Query: 236 HPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFR-IIKNYEMAEHLKLEFM 294
H + ++ +V V G FD+ + G+S ++ L I N + K +
Sbjct: 265 HDILIE-IVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQIS 323
Query: 295 KEAGFAHMRICDGVGSYLQLCGLLAKLS 322
R+ +G ++QL LL K+S
Sbjct: 324 WLLFTTDSRLNNGTNEHIQLLNLLVKIS 351
>pdb|1SXJ|E Chain E, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 354
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 121/236 (51%), Gaps = 35/236 (14%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIA-RDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
WV+KYRP + + N + L ++ + ++P+L+L GP GTGK T +AL + GP
Sbjct: 4 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 63
Query: 74 N-YREAV-----------------------MELNASDDRGID--VVRNKIKMFAQ-KKVT 106
YR + +E+ SD D V++ +K AQ ++V
Sbjct: 64 GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD 123
Query: 107 LPPGK------HKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQS 160
K +K V+++EA+S+T AQ ALRRTME YS + R + C+ S II PI+S
Sbjct: 124 FQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKS 183
Query: 161 RCAIVRFSRLSDEEILSRLMVVVQEEKVPY-VPEGLEAIIFTADGDMRQALNNLQA 215
+C ++R SD EI + L VV E++ + L+ I ++G++R +L L++
Sbjct: 184 QCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 17/181 (9%)
Query: 17 EKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGP-PGTGKTTSILALAHELLGPNY 75
+KYRP+ + + + I G +P++IL P PGTGKTT AL H++
Sbjct: 18 QKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV----- 72
Query: 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD-SMTAGAQQALRRT 134
+M +N SD + ID VR + FA G+ KV+V+DE D S A +Q+ LR
Sbjct: 73 NADMMFVNGSDCK-IDFVRGPLTNFASAASF--DGRQKVIVIDEFDRSGLAESQRHLRSF 129
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDE-------EILSRLMVVVQEEK 187
ME YS++ + N II+P+QSRC ++ F + +DE +++ RL + + E
Sbjct: 130 MEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEG 189
Query: 188 V 188
+
Sbjct: 190 I 190
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 109/253 (43%), Gaps = 35/253 (13%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGII---------------ARDGN--MPNLILA 52
A D W KY PT + + GN +V +L +DG+ +L
Sbjct: 24 ASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLY 83
Query: 53 GPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIK-----------MFA 101
GPPG GKTT+ +A EL ++E NASD R ++ +K
Sbjct: 84 GPPGIGKTTAAHLVAQEL-----GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKH 138
Query: 102 QKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEI-YSNSTRFALACNVSS-KIIEPIQ 159
++ GKH V+++DE D M+ G + + + + ST L CN + + P
Sbjct: 139 NEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFD 198
Query: 160 SRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSG 219
C ++F R I SRLM + EK P ++ +I T GD+RQ +N L +
Sbjct: 199 RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTT 258
Query: 220 FRFVNQENVFKVC 232
+ +N EN+ ++
Sbjct: 259 TKTINHENINEIS 271
>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
Length = 250
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 101/234 (43%), Gaps = 28/234 (11%)
Query: 18 KYRPTKVCDIVGNLDAVARLGIIARDGNMPNLIL-AGPPGTGKTTSILALAHEL------ 70
K+RP D+VG + L G + + L +G G GKT+ LA L
Sbjct: 16 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 75
Query: 71 ------LGPNYREA-------VMELNASDDRGIDVVRNKIKMFAQKKVTLPP--GKHKVV 115
+ N RE ++E++A+ ++ R+ + V P G+ KV
Sbjct: 76 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD-----NVQYAPARGRFKVY 130
Query: 116 VLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEI 175
++DE ++ + AL +T+E +F LA K+ I SRC L E+I
Sbjct: 131 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 190
Query: 176 LSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALN-NLQATYSGFRFVNQENV 228
+L ++ EE + + P L+ + A+G +R AL+ QA SG V+ + V
Sbjct: 191 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 244
>pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|C Chain C, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|D Chain D, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|G Chain G, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|H Chain H, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|I Chain I, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLI|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 395
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 28/225 (12%)
Query: 18 KYRPTKVCDIVGNLDAVARLGIIARDGNMPNLIL-AGPPGTGKTTSILALAHEL------ 70
K+RP D+VG + L G + + L +G G GKT+ LA L
Sbjct: 31 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 90
Query: 71 ------LGPNYREA-------VMELNASDDRGIDVVRNKIKMFAQKKVTLPP--GKHKVV 115
+ N RE ++E++A+ ++ R+ + V P G+ KV
Sbjct: 91 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD-----NVQYAPARGRFKVY 145
Query: 116 VLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEI 175
++DE ++ + AL +T+E +F LA K+ I SRC L E+I
Sbjct: 146 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 205
Query: 176 LSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALN-NLQATYSG 219
+L ++ EE + + P L+ + A+G +R AL+ QA SG
Sbjct: 206 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG 250
>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex
Length = 368
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 28/225 (12%)
Query: 18 KYRPTKVCDIVGNLDAVARLGIIARDGNMPNLIL-AGPPGTGKTTSILALAHEL------ 70
K+RP D+VG + L G + + L +G G GKT+ LA L
Sbjct: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68
Query: 71 ------LGPNYREA-------VMELNASDDRGIDVVRNKIKMFAQKKVTLPP--GKHKVV 115
+ N RE ++E++A+ ++ R+ + V P G+ KV
Sbjct: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD-----NVQYAPARGRFKVY 123
Query: 116 VLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEI 175
++DE ++ + AL +T+E +F LA K+ I SRC L E+I
Sbjct: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183
Query: 176 LSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALN-NLQATYSG 219
+L ++ EE + + P L+ + A+G +R AL+ QA SG
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG 228
>pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|L Chain L, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|M Chain M, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|N Chain N, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
Length = 376
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 28/225 (12%)
Query: 18 KYRPTKVCDIVGNLDAVARLGIIARDGNMPNLIL-AGPPGTGKTTSILALAHEL------ 70
K+RP D+VG + L G + + L +G G GKT+ LA L
Sbjct: 12 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 71
Query: 71 ------LGPNYREA-------VMELNASDDRGIDVVRNKIKMFAQKKVTLPP--GKHKVV 115
+ N RE ++E++A+ ++ R+ + V P G+ KV
Sbjct: 72 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD-----NVQYAPARGRFKVY 126
Query: 116 VLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEI 175
++DE ++ + AL +T+E +F LA K+ I SRC L E+I
Sbjct: 127 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 186
Query: 176 LSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALN-NLQATYSG 219
+L ++ EE + + P L+ + A+G +R AL+ QA SG
Sbjct: 187 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG 231
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1XXH|B Chain B, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|C Chain C, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|D Chain D, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|G Chain G, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|H Chain H, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|I Chain I, Atpgs Bound E. Coli Clamp Loader Complex
Length = 373
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 28/225 (12%)
Query: 18 KYRPTKVCDIVGNLDAVARLGIIARDGNMPNLIL-AGPPGTGKTTSILALAHEL------ 70
K+RP D+VG + L G + + L +G G GKT+ LA L
Sbjct: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68
Query: 71 ------LGPNYREA-------VMELNASDDRGIDVVRNKIKMFAQKKVTLPP--GKHKVV 115
+ N RE ++E++A+ ++ R+ + V P G+ KV
Sbjct: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD-----NVQYAPARGRFKVY 123
Query: 116 VLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEI 175
++DE ++ + AL +T+E +F LA K+ I SRC L E+I
Sbjct: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183
Query: 176 LSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALN-NLQATYSG 219
+L ++ EE + + P L+ + A+G +R AL+ QA SG
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG 228
>pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|C Chain C, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|D Chain D, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|G Chain G, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|H Chain H, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|I Chain I, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
Length = 395
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 101/234 (43%), Gaps = 28/234 (11%)
Query: 18 KYRPTKVCDIVGNLDAVARLGIIARDGNMPNLIL-AGPPGTGKTTSILALAHEL------ 70
K+RP D+VG + L G + + L +G G GKT+ LA L
Sbjct: 31 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 90
Query: 71 ------LGPNYREA-------VMELNASDDRGIDVVRNKIKMFAQKKVTLPP--GKHKVV 115
+ N RE ++E++A+ ++ R+ + V P G+ KV
Sbjct: 91 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD-----NVQYAPARGRFKVY 145
Query: 116 VLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEI 175
++DE ++ + AL +T+E +F LA K+ I SRC L E+I
Sbjct: 146 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATADPQKLPVTILSRCLQFHLKALDVEQI 205
Query: 176 LSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALN-NLQATYSGFRFVNQENV 228
+L ++ EE + + P L+ + A+G +R AL+ QA SG V+ + V
Sbjct: 206 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 259
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 91/211 (43%), Gaps = 19/211 (9%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARD---GNMPNLILAGPPGTGKTTSILALAHEL 70
P + RP + +G +A + R G++ ++IL GPPGTGKTT +A
Sbjct: 15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIAR-- 72
Query: 71 LGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQA 130
Y A +E ++ G+ +R I+ Q + G+ ++ +DE Q A
Sbjct: 73 ----YANADVERISAVTSGVKEIREAIERARQNRNA---GRRTILFVDEVHRFNKSQQDA 125
Query: 131 LRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY 190
+E + + A N S ++ + SR + LS E+I L ++++ Y
Sbjct: 126 FLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGY 185
Query: 191 ------VP-EGLEAIIFTADGDMRQALNNLQ 214
+P E AI +GD R+ALN L+
Sbjct: 186 GGQDIVLPDETRRAIAELVNGDARRALNTLE 216
>pdb|3MD0|A Chain A, Crystal Structure Of ArginineORNITHINE TRANSPORT SYSTEM
ATPASE FROM Mycobacterium Tuberculosis Bound To Gdp (A
Ras-Like Gtpase Superfamily Protein)
pdb|3P32|A Chain A, Hydrolysis Of Gtp To Gdp By An Mcm-Associated And Meab-
And Mmaa-Like G-Protein From Mycobacterium Tuberculosis
pdb|4GT1|A Chain A, Crystal Structure Of A Meab- And Mmaa-Like Gtpase From
Mycobacterium Tuberculosis Bound To 2'-Deoxyguanosine
Diphosphate
Length = 355
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 44 GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR-GIDVVRNKIKM 99
GN + + G PG GK+T+I AL L+ +R AV+ ++ S R G ++ +K +M
Sbjct: 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRM 133
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 18/22 (81%)
Query: 49 LILAGPPGTGKTTSILALAHEL 70
++LAGPPGTGKT LA+A EL
Sbjct: 66 VLLAGPPGTGKTALALAIAQEL 87
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 29 GNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
GN AV +L + +DG L+L GP G GKTT++ +A
Sbjct: 23 GNFTAVNKLNLTIKDGEF--LVLLGPSGCGKTTTLRMIA 59
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 29 GNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
GN AV +L + +DG L+L GP G GKTT++ +A
Sbjct: 22 GNFTAVNKLNLTIKDGEF--LVLLGPSGCGKTTTLRMIA 58
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 41 ARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYR 76
AR + +L+L GPPG GKTT +AHE LG N R
Sbjct: 33 ARKEPLEHLLLFGPPGLGKTTLAHVIAHE-LGVNLR 67
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 18/22 (81%)
Query: 49 LILAGPPGTGKTTSILALAHEL 70
++LAGPPGTGKT LA+A EL
Sbjct: 80 VLLAGPPGTGKTALALAIAQEL 101
>pdb|3NXS|A Chain A, Crystal Structure Of LaoAO TRANSPORT SYSTEM FROM
MYCOBACTERIUM Smegmatis Bound To Gdp
Length = 329
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 37 LGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR-GIDVVRN 95
L ++ G+ ++ + G PG GK+T+I AL L+ +R AV+ ++ S R G ++ +
Sbjct: 48 LDLMPEAGSAMHVGITGVPGVGKSTTIEALGMHLIEAGHRVAVLAVDPSSTRTGGSILGD 107
Query: 96 KIKM 99
K +M
Sbjct: 108 KTRM 111
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 41 ARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYR 76
AR + +L+L GPPG GKTT +AHE LG N R
Sbjct: 33 ARKEPLEHLLLFGPPGLGKTTLAHVIAHE-LGVNLR 67
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 41 ARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYR 76
AR + +L+L GPPG GKTT +AHE LG N R
Sbjct: 33 ARKEPLEHLLLFGPPGLGKTTLAHVIAHE-LGVNLR 67
>pdb|3TK1|A Chain A, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
pdb|3TK1|B Chain B, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
Length = 330
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 44 GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR-GIDVVRNKIKM 99
G ++ + G PG GK+TSI AL L+ +R AV+ ++ S R G ++ +K +M
Sbjct: 54 GRAMHVGITGVPGVGKSTSIEALGMHLIEQGHRVAVLAVDPSSVRSGGSILGDKTRM 110
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNM-----PNLILAGPPGTGKTTSILA 65
YD V+ RP + + +G + +L + M +++LAGPPG GKTT
Sbjct: 12 YD-SGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHI 70
Query: 66 LAHEL 70
+A EL
Sbjct: 71 IASEL 75
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNM-----PNLILAGPPGTGKTTSILA 65
YD V+ RP + + +G + +L + M +++LAGPPG GKTT
Sbjct: 12 YD-SGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHI 70
Query: 66 LAHEL 70
+A EL
Sbjct: 71 IASEL 75
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNM-----PNLILAGPPGTGKTTSILA 65
YD V+ RP + + +G + +L + M +++LAGPPG GKTT
Sbjct: 12 YD-SGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHI 70
Query: 66 LAHEL 70
+A EL
Sbjct: 71 IASEL 75
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNM-----PNLILAGPPGTGKTTSILA 65
YD V+ RP + + +G + +L + M +++LAGPPG GKTT
Sbjct: 12 YD-SGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHI 70
Query: 66 LAHEL 70
+A EL
Sbjct: 71 IASEL 75
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNM-----PNLILAGPPGTGKTTSILA 65
YD V+ RP + + +G + +L + M +++LAGPPG GKTT
Sbjct: 12 YD-SGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHI 70
Query: 66 LAHEL 70
+A EL
Sbjct: 71 IASEL 75
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 20 RPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
R V + G + AV + + +DG +IL GP G GKTT++ +A
Sbjct: 5 RLVDVWKVFGEVTAVREMSLEVKDGEF--MILLGPSGCGKTTTLRMIA 50
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 20/123 (16%)
Query: 37 LGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMEL-NASDDRGIDVVRN 95
LGI G +IL GPPGTGKT A+AH R + EL G +VR
Sbjct: 177 LGIAQPKG----VILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVR- 231
Query: 96 KIKMFAQKKVTLPPGKHKVVVLDEADSM-------TAGAQQALRRTM-EIYSNSTRFALA 147
++F + P ++ +DE DS+ + G ++RTM E+ + F +
Sbjct: 232 --ELFVMAREHAP----SIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285
Query: 148 CNV 150
N+
Sbjct: 286 KNI 288
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport
Atp- Binding Protein
Length = 375
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 29 GNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
G++ AV L + +DG L+L GP G GKTT++ +A
Sbjct: 17 GDVTAVKDLSLEIKDGEF--LVLLGPSGCGKTTTLRXIA 53
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNM-----PNLILAGPPGTGKTTSILA 65
YD V+ RP + + +G + +L + M +++LAGPPG G+TT
Sbjct: 12 YD-SGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGRTTLAHI 70
Query: 66 LAHEL 70
+A EL
Sbjct: 71 IASEL 75
>pdb|2QM7|A Chain A, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
pdb|2QM7|B Chain B, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
Length = 337
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 39 IIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR-GIDVVRNKI 97
++ + G + + G PG GK+T+I AL L ++ AV+ ++ S R G ++ +K
Sbjct: 48 VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107
Query: 98 KM 99
+M
Sbjct: 108 RM 109
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 21/88 (23%)
Query: 44 GNMP-NLILAGPPGTGKTTSILALAHE-------LLGPNYREAVMELNASDDRGIDVVRN 95
G +P +++ GPPGTGKT A+A E + G ++ E + + AS R
Sbjct: 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVR------- 94
Query: 96 KIKMFAQKKVTLPPGKHKVVVLDEADSM 123
MF Q K P ++ +DE D++
Sbjct: 95 --DMFEQAKKAAP----CIIFIDEIDAV 116
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 21/86 (24%)
Query: 46 MP-NLILAGPPGTGKTTSILALAHE-------LLGPNYREAVMELNASDDRGIDVVRNKI 97
MP ++L GPPGTGKT A+A E + G ++ E + + A+ R
Sbjct: 48 MPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVR--------- 98
Query: 98 KMFAQKKVTLPPGKHKVVVLDEADSM 123
+FAQ K P +V +DE D++
Sbjct: 99 DLFAQAKAHAPC----IVFIDEIDAV 120
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 27 IVGNLDAVARLGII---ARDGNMPN--LILAGPPGTGKTTSILALAHELLGPN 74
+VG L A G++ R+G + +++AG PGTGKT + +A + LGP+
Sbjct: 46 MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMA-QALGPD 97
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 28 VGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
V N D LG++ G ++LAGPPG GKT A+A+E
Sbjct: 30 VRNPDQFKALGLVTPAG----VLLAGPPGCGKTLLAKAVANE 67
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 17/82 (20%)
Query: 32 DAVARLGI---------IARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMEL 82
D V R G+ I +DG + ++ GP GTGKTT++ LA +L+ PN + E
Sbjct: 96 DCVHRYGVNAFVLYRLPIVKDGMVVGIV--GPNGTGKTTAVKILAGQLI-PN----LCED 148
Query: 83 NASDDRGIDVVR-NKIKMFAQK 103
N S D I R N+++ + ++
Sbjct: 149 NDSWDNVIRAFRGNELQNYFER 170
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 17/82 (20%)
Query: 32 DAVARLGI---------IARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMEL 82
D V R G+ I +DG + ++ GP GTGKTT++ LA +L+ PN + E
Sbjct: 82 DCVHRYGVNAFVLYRLPIVKDGMVVGIV--GPNGTGKTTAVKILAGQLI-PN----LCED 134
Query: 83 NASDDRGIDVVR-NKIKMFAQK 103
N S D I R N+++ + ++
Sbjct: 135 NDSWDNVIRAFRGNELQNYFER 156
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 14/103 (13%)
Query: 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTL 107
N++L GP G+GKT LA L P L + G DV ++ +
Sbjct: 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 133
Query: 108 PPGKHKVVVLDEADSMT--------------AGAQQALRRTME 136
+ +V +DE D ++ G QQAL + +E
Sbjct: 134 QKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVE 176
>pdb|3QRZ|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
pdb|3QRZ|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
pdb|3QRZ|C Chain C, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
Length = 223
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
S++ H L NYR +V L+ASDD G VV + I V +PPG + L D
Sbjct: 157 SVVGGDHRL--KNYR-SVTTLHASDDEGTVVVESYI-------VDVPPGNTEEETLSFVD 206
Query: 122 SMTAGAQQALRRT 134
++ Q+L R+
Sbjct: 207 TIVRCNLQSLARS 219
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 45/109 (41%), Gaps = 19/109 (17%)
Query: 35 ARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMEL-NASDDRGIDVV 93
A LGI G ++L GPPGTGKT A+A+ R EL G +V
Sbjct: 236 ATLGIDPPKG----ILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMV 291
Query: 94 RNKIKMFAQKKVTLPPGKHKVVVLDEADSM-------TAGAQQALRRTM 135
R +M KK ++ DE D++ AG ++RTM
Sbjct: 292 RELFEMARTKKAC-------IIFFDEIDAVGGARFDDGAGGDNEVQRTM 333
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Adenylate Kinase Complexed With Two Molecules Of Adp
And Mg
Length = 201
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 38 GIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
G++ R +M ++L GPPG GK T + LA +L
Sbjct: 13 GLVPRGSHM-RVLLLGPPGAGKGTQAVKLAEKL 44
>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2F2U|B Chain B, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2H9V|A Chain A, Structural Basis For Induced-Fit Binding Of Rho-Kinase To
The Inhibitor Y27632
Length = 402
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLIL 51
YD+P EK+ ++V LDA+ +G+I RD N++L
Sbjct: 169 YDVP--EKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLL 207
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 15/17 (88%)
Query: 50 ILAGPPGTGKTTSILAL 66
I+ GPPGTGKTT+++ +
Sbjct: 209 IIHGPPGTGKTTTVVEI 225
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 15/17 (88%)
Query: 50 ILAGPPGTGKTTSILAL 66
I+ GPPGTGKTT+++ +
Sbjct: 209 IIHGPPGTGKTTTVVEI 225
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 46 MPNLILAGPPGTGKTT 61
+PN++L G PG GKTT
Sbjct: 4 LPNILLTGTPGVGKTT 19
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 16/106 (15%)
Query: 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVMEL-NASDDRGIDVVRNKIKMFAQKKVT 106
++L GPPGTGKT A+A E R EL G +V++ K+ +K +
Sbjct: 53 GILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPS 112
Query: 107 LPPGKHKVVVLDE--------ADSMTAGAQQALRRTMEIYSNSTRF 144
++ +DE D++T G ++ R M++ + F
Sbjct: 113 -------IIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF 151
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 26/116 (22%)
Query: 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASD------DRGIDVVRNKIKMFAQ 102
++L GPPGTGKT + A+A+ + + A + +N S+ G +VR+ ++ +
Sbjct: 209 VLLYGPPGTGKTMLVKAVAN-----STKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARE 263
Query: 103 KKVTLPPGKHKVVVLDEADSM--------TAGAQQALRRTMEIYSNSTRFALACNV 150
+ ++ +DE DS+ T ++ R +E+ + F + NV
Sbjct: 264 NAPS-------IIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNV 312
>pdb|4G1E|B Chain B, Crystal Structure Of Integrin Alpha V Beta 3 With
Coil-Coiled Tag
Length = 738
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 163 AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQA 209
+VRF D S ++ VV+E + P PE +E + F + G Q
Sbjct: 663 CVVRFQYYEDSSGKS-ILYVVEEPECPKGPESMENLYFQSGGKNAQC 708
>pdb|1Z6G|A Chain A, Crystal Structure Of Guanylate Kinase From Plasmodium
Falciparum
Length = 218
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 38 GIIARDGNMPN---LILAGPPGTGKTTSILALAHELLGPNY 75
G++ R G+M N L++ GP G GK T I L +E PNY
Sbjct: 13 GLVPR-GSMNNIYPLVICGPSGVGKGTLIKKLLNEF--PNY 50
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 48 NLILAGPPGTGKTTSILALAHELLGPNYRE 77
N+++ G PGTGKT+ +A EL G + E
Sbjct: 12 NILITGTPGTGKTSMAEMIAAELDGFQHLE 41
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70
Y I E+ K+ ++G + + R + + N +L G PG GKT + LA +
Sbjct: 8 YTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67
Query: 71 L 71
+
Sbjct: 68 I 68
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 29 GNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
G + AV + +DG + L GP G GKTT++L LA
Sbjct: 14 GKVKAVDGVSFEVKDGEF--VALLGPSGCGKTTTLLMLA 50
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0
Angstroms Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 46 MPNLILAGPPGTGKTT 61
+PN++L G PG GKTT
Sbjct: 11 LPNILLTGTPGVGKTT 26
>pdb|3ID5|C Chain C, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3ID5|G Chain G, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3PLA|C Chain C, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|D Chain D, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|L Chain L, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
Length = 130
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 129 QALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKV 188
+A+R+ E S + N ++K +E Q++ I+ + EEI++ L ++ E+K+
Sbjct: 24 EAVRKAKE----SGKIKKGTNETTKAVERGQAKLVII-AEDVQPEEIVAHLPLLCDEKKI 78
Query: 189 PYV 191
PYV
Sbjct: 79 PYV 81
>pdb|2QM8|A Chain A, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide Free
Form
pdb|2QM8|B Chain B, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide Free
Form
Length = 337
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 39 IIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR-GIDVVRNKI 97
++ + G + + G PG GK+T+I AL L ++ AV+ ++ S R G ++ +K
Sbjct: 48 VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107
Query: 98 K 98
+
Sbjct: 108 R 108
>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|C Chain C, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 406
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLIL 51
YD+P EK+ ++V LDA+ +G I RD N++L
Sbjct: 168 YDVP--EKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLL 206
>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ESM|B Chain B, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ETK|A Chain A, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETK|B Chain B, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETR|A Chain A, Crystal Structure Of Rock I Bound To Y-27632
pdb|2ETR|B Chain B, Crystal Structure Of Rock I Bound To Y-27632
pdb|3D9V|A Chain A, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3D9V|B Chain B, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3NCZ|A Chain A, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|B Chain B, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|C Chain C, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|D Chain D, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NDM|A Chain A, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|B Chain B, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|C Chain C, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|D Chain D, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
Length = 415
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLIL 51
YD+P EK+ ++V LDA+ +G I RD N++L
Sbjct: 168 YDVP--EKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLL 206
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 21/86 (24%)
Query: 46 MP-NLILAGPPGTGKTTSILALAHE-------LLGPNYREAVMELNASDDRGIDVVRNKI 97
MP ++L GPPGTG T A+A E + G ++ E + + A+ R
Sbjct: 48 MPKGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVELFVGVGAARVR--------- 98
Query: 98 KMFAQKKVTLPPGKHKVVVLDEADSM 123
+FAQ K P +V +DE D++
Sbjct: 99 DLFAQAKAHAPC----IVFIDEIDAV 120
>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|B Chain B, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|C Chain C, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|D Chain D, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3TV7|A Chain A, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|B Chain B, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|C Chain C, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|D Chain D, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TWJ|A Chain A, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|B Chain B, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|C Chain C, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|D Chain D, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
Length = 410
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLIL 51
YD+P EK+ ++V LDA+ +G I RD N++L
Sbjct: 163 YDVP--EKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLL 201
>pdb|1PXW|A Chain A, Crystal Structure Of L7ae Srnp Core Protein From
Pyrococcus Abyssii
pdb|1PXW|B Chain B, Crystal Structure Of L7ae Srnp Core Protein From
Pyrococcus Abyssii
Length = 128
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
A++AL+ +EI ++ + N ++K +E Q++ I+ + EEI++ L + +E+
Sbjct: 21 AEKALQ-AVEIARDTGKIRKGTNETTKAVERGQAKLVII-AEDVDPEEIVAHLPPLCEEK 78
Query: 187 KVPYV 191
++PY+
Sbjct: 79 EIPYI 83
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 47 PNLILAGPPGTGKTTSILALAHEL 70
P L LAGPPG GKT+ ++A L
Sbjct: 109 PILCLAGPPGVGKTSLAKSIAKSL 132
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 49 LILAGPPGTGKTTSILALAHE 69
++L GPPGTGKT A+A+E
Sbjct: 241 ILLYGPPGTGKTLIARAVANE 261
>pdb|3HJW|C Chain C, Structure Of A Functional Ribonucleoprotein Pseudouridine
Synthase Bound To A Substrate Rna
Length = 120
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
A++AL+ +EI ++ + N ++K +E Q++ I+ + EEI++ L + +E+
Sbjct: 14 AEKALQ-AVEIARDTGKIRKGTNETTKAVERGQAKLVII-AEDVDPEEIVAHLPPLCEEK 71
Query: 187 KVPYV 191
++PY+
Sbjct: 72 EIPYI 76
>pdb|2HVY|D Chain D, Crystal Structure Of An HACA BOX RNP FROM PYROCOCCUS
FURIOSUS
pdb|3HAX|D Chain D, Crystal Structure Of A Substrate-Bound Gar1-Minus HACA RNP
FROM Pyrococcus Furiosus
pdb|3HAY|D Chain D, Crystal Structure Of A Substrate-Bound Full HACA RNP FROM
Pyrococcus Furiosus
Length = 130
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
A++AL+ +EI ++ + N ++K +E Q++ I+ + EEI++ L + +E+
Sbjct: 17 AEKALQ-AVEIARDTGKIRKGTNETTKAVERGQAKLVII-AEDVDPEEIVAHLPPLCEEK 74
Query: 187 KVPYV 191
++PY+
Sbjct: 75 EIPYI 79
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 49 LILAGPPGTGKTTSILALAHE 69
++L GPPGTGKT A+A+E
Sbjct: 241 ILLYGPPGTGKTLIARAVANE 261
>pdb|3LWO|C Chain C, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
5BRU
pdb|3LWP|C Chain C, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
5BRDU
pdb|3LWQ|C Chain C, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
3MU
pdb|3LWR|C Chain C, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
4SU
pdb|3LWV|C Chain C, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
2'- Deoxyuridine
pdb|3J20|3 Chain 3, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (30s Ribosomal Subunit)
pdb|3J21|G Chain G, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
pdb|3J21|4 Chain 4, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 123
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
A++AL+ +EI ++ + N ++K +E Q++ I+ + EEI++ L + +E+
Sbjct: 16 AEKALQ-AVEIARDTGKIRKGTNETTKAVERGQAKLVII-AEDVDPEEIVAHLPPLCEEK 73
Query: 187 KVPYV 191
++PY+
Sbjct: 74 EIPYI 78
>pdb|3NMU|C Chain C, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NMU|G Chain G, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NVI|B Chain B, Structure Of N-Terminal Truncated Nop5658 BOUND WITH L7AE
AND BOX CD Rna
pdb|3NVI|D Chain D, Structure Of N-Terminal Truncated Nop5658 BOUND WITH L7AE
AND BOX CD Rna
pdb|3NVK|E Chain E, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVK|H Chain H, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
Length = 129
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
A++AL+ +EI ++ + N ++K +E Q++ I+ + EEI++ L + +E+
Sbjct: 22 AEKALQ-AVEIARDTGKIRKGTNETTKAVERGQAKLVII-AEDVDPEEIVAHLPPLCEEK 79
Query: 187 KVPYV 191
++PY+
Sbjct: 80 EIPYI 84
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 49 LILAGPPGTGKTTSILALAHE 69
++L GPPGTGKT A+A+E
Sbjct: 241 ILLYGPPGTGKTLIARAVANE 261
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 49 LILAGPPGTGKTTSILALAHE 69
++L GPPGTGKT A+A+E
Sbjct: 241 ILLYGPPGTGKTLIARAVANE 261
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 49 LILAGPPGTGKTTSILALAHE 69
++L GPPGTGKT A+A+E
Sbjct: 241 ILLYGPPGTGKTLIARAVANE 261
>pdb|2CZW|A Chain A, Crystal Structure Analysis Of Protein Component Ph1496p Of
P.Horikoshii Ribonuclease P
Length = 124
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 127 AQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186
A++AL+ +EI ++ + N ++K +E Q++ I+ + EEI++ L + +E+
Sbjct: 17 AEKALQ-AVEIARDTGKIRKGTNETTKAVERGQAKLVII-AEDVDPEEIVAHLPPLCEEK 74
Query: 187 KVPYV 191
++PY+
Sbjct: 75 EIPYI 79
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 49 LILAGPPGTGKTTSILALAHE 69
++L GPPGTGKT A+A+E
Sbjct: 241 ILLYGPPGTGKTLIARAVANE 261
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 29 GNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
GN A+ + + +DG + L GP G+GK+T + +A
Sbjct: 14 GNFTALNNINLKIKDGEF--MALLGPSGSGKSTLLYTIA 50
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 48 NLILAGPPGTGKTTSI------LALAHELLGPNYREAV 79
NLIL G PG+GK T LAH G REA+
Sbjct: 7 NLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAI 44
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 20/82 (24%)
Query: 49 LILAGPPGTGKTTSILALAHE-------LLGPNYREAVMELNASDDRGIDVVRNKIKMFA 101
++L GPPGTGKT A+A E + G ++ E + L AS R +F
Sbjct: 47 VLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVR---------DLFE 97
Query: 102 QKKVTLPPGKHKVVVLDEADSM 123
K P ++ +DE D++
Sbjct: 98 TAKKQAP----SIIFIDEIDAI 115
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 16/92 (17%)
Query: 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASD--DRGIDVVRNKIK-MFAQKKV 105
++L GPPGTGK+ A+A E +++SD + + +K +FA +
Sbjct: 63 ILLYGPPGTGKSYLAKAVATE-----ANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARE 117
Query: 106 TLPPGKHKVVVLDEADSMTA----GAQQALRR 133
P ++ +DE D++T G +A RR
Sbjct: 118 NKP----SIIFIDEVDALTGTRGEGESEASRR 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,107,905
Number of Sequences: 62578
Number of extensions: 362954
Number of successful extensions: 1331
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1243
Number of HSP's gapped (non-prelim): 99
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)