BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020071
(331 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P53033|RFC2_CHICK Replication factor C subunit 2 OS=Gallus gallus GN=RFC2 PE=2 SV=1
Length = 359
Score = 467 bits (1202), Expect = e-131, Method: Compositional matrix adjust.
Identities = 209/321 (65%), Positives = 269/321 (83%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+ S+ ++S Y++PWVEKYRP K+C++VGN D V+RL + A++GN+PN+I+AGPPGTGKT
Sbjct: 29 LGSAPAASGHYELPWVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKT 88
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TSIL LA LLGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEA
Sbjct: 89 TSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEA 148
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RL+
Sbjct: 149 DSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLL 208
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
+V++E VPY +GLEAIIFTA GDMRQALNNLQ+TYSGF F+N ENVFKVCD+PHPL V
Sbjct: 209 KIVEKEDVPYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLV 268
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
K M+++ + D+A L L+ LGYSP D+I +FR+ K ++M E+LKLEF+KE G+
Sbjct: 269 KEMIQHCINANIDEAYKILAHLWRLGYSPEDVIGNIFRVCKTFQMPEYLKLEFIKEIGYT 328
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HM+I +GV S LQ+ GLLA+L
Sbjct: 329 HMKIAEGVNSLLQMAGLLARL 349
>sp|Q641W4|RFC2_RAT Replication factor C subunit 2 OS=Rattus norvegicus GN=Rfc2 PE=2
SV=1
Length = 349
Score = 464 bits (1194), Expect = e-130, Method: Compositional matrix adjust.
Identities = 209/317 (65%), Positives = 267/317 (84%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
S ++ Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKTTSIL
Sbjct: 23 SKTTGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSIL 82
Query: 65 ALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
LA LLGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT
Sbjct: 83 CLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMT 142
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D ++LSRLM V++
Sbjct: 143 DGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIE 202
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
+EKVPY +GLEAIIFTA GDMRQALNNLQ+T+SGF ++N ENVFKVCD+PHPL VK M+
Sbjct: 203 KEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMI 262
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRI 304
++ ++ D+A L L+ LGYSP D+I +FR+ K + MAE+LKLEF+KE G+ HM++
Sbjct: 263 QHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKV 322
Query: 305 CDGVGSYLQLCGLLAKL 321
+GV S LQ+ GLLA+L
Sbjct: 323 AEGVNSLLQMAGLLARL 339
>sp|P35250|RFC2_HUMAN Replication factor C subunit 2 OS=Homo sapiens GN=RFC2 PE=1 SV=3
Length = 354
Score = 464 bits (1193), Expect = e-130, Method: Compositional matrix adjust.
Identities = 210/321 (65%), Positives = 268/321 (83%)
Query: 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKT 60
+ + S+ Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKT
Sbjct: 24 FSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKT 83
Query: 61 TSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120
TSIL LA LLGP ++A++ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEA
Sbjct: 84 TSILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEA 143
Query: 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180
DSMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RLM
Sbjct: 144 DSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLM 203
Query: 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHV 240
V+++E+VPY +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL V
Sbjct: 204 NVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLV 263
Query: 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFA 300
K M+++ + D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+
Sbjct: 264 KEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYT 323
Query: 301 HMRICDGVGSYLQLCGLLAKL 321
HM+I +GV S LQ+ GLLA+L
Sbjct: 324 HMKIAEGVNSLLQMAGLLARL 344
>sp|Q05B83|RFC2_BOVIN Replication factor C subunit 2 OS=Bos taurus GN=RFC2 PE=2 SV=1
Length = 352
Score = 462 bits (1190), Expect = e-129, Method: Compositional matrix adjust.
Identities = 211/320 (65%), Positives = 267/320 (83%)
Query: 2 ASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61
+ + S+ Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKTT
Sbjct: 23 SKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTT 82
Query: 62 SILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121
SIL LA LLGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEAD
Sbjct: 83 SILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEAD 142
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
SMT GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +IL+RL+
Sbjct: 143 SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLS 202
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
V+++EKV Y +GLEAIIFTA GDMRQALNNLQ+TYSGF F+N ENVFKVCD+PHPL VK
Sbjct: 203 VIEKEKVQYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVK 262
Query: 242 NMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAH 301
M+++ + D+A L L+ LGYSP DII +FR+ K ++MAE+LKLEF+KE G+ H
Sbjct: 263 EMIQHCVSADIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTH 322
Query: 302 MRICDGVGSYLQLCGLLAKL 321
M+I +GV S LQ+ GLLA+L
Sbjct: 323 MKIAEGVNSLLQMAGLLARL 342
>sp|Q9WUK4|RFC2_MOUSE Replication factor C subunit 2 OS=Mus musculus GN=Rfc2 PE=2 SV=1
Length = 349
Score = 462 bits (1189), Expect = e-129, Method: Compositional matrix adjust.
Identities = 208/317 (65%), Positives = 267/317 (84%)
Query: 5 SSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64
S ++ Y++PWVEKYRP K+ +IVGN D V+RL + AR+GN+PN+I+AGPPGTGKTTSIL
Sbjct: 23 SKTAGHYELPWVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSIL 82
Query: 65 ALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
LA LLGP ++AV+ELNAS+DRGIDVVRNKIKMFAQ+KVTLP G+HK+++LDEADSMT
Sbjct: 83 CLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMT 142
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
GAQQALRRTMEIYS +TRFALACN S KIIEPIQSRCA++R+++L+D ++L+RLM V++
Sbjct: 143 DGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIE 202
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
+EKVPY +GLEAIIFTA GDMRQALNNLQ+T+SGF ++N ENVFKVCD+PHPL VK M+
Sbjct: 203 KEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMI 262
Query: 245 RNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRI 304
++ ++ D+A L L+ LGYSP D+I +FR+ K + MAE+LKLEF+KE G+ HM++
Sbjct: 263 QHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKV 322
Query: 305 CDGVGSYLQLCGLLAKL 321
+GV S LQ+ GLLA+L
Sbjct: 323 AEGVNSLLQMAGLLARL 339
>sp|Q54E21|RFC2_DICDI Probable replication factor C subunit 2 OS=Dictyostelium discoideum
GN=rfc2 PE=3 SV=1
Length = 338
Score = 420 bits (1079), Expect = e-117, Method: Compositional matrix adjust.
Identities = 201/313 (64%), Positives = 249/313 (79%), Gaps = 1/313 (0%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + DIVGN + V+RL I++DGN+PN+I++GPPGTGKT+SIL LA LLG
Sbjct: 20 LPWVEKYRPILIKDIVGNEETVSRLESISKDGNLPNIIISGPPGTGKTSSILCLARALLG 79
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
NY+EAV ELNASDDR +DVVR+KIK FA KKVTLP G+HK+++LDE DSMT+GAQQALR
Sbjct: 80 ANYKEAVYELNASDDRTLDVVRDKIKSFAMKKVTLPAGRHKIIILDEVDSMTSGAQQALR 139
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R MEIYS +TRFA ACN S+KIIEPIQSRCA++RF+RLSD +IL+RL VVQ EKVPY
Sbjct: 140 RIMEIYSGTTRFAFACNQSTKIIEPIQSRCAVLRFTRLSDSQILTRLREVVQIEKVPYTD 199
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GL AIIFTA+GDMRQALNNLQAT+SGF +N ENV KVCDQPHPL +K ++ + F
Sbjct: 200 DGLAAIIFTAEGDMRQALNNLQATHSGFGLINAENVTKVCDQPHPLIIKQIIALCAKSDF 259
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVGSY 311
+A LK+L+D GYS DII+ LF I K+ + E+ KLEF+KE GF ++R GV +
Sbjct: 260 KEAYPFLKKLWDDGYSSIDIISALFSITKSSNNIPEYQKLEFLKEIGFCNLRATTGVNTL 319
Query: 312 LQLCGLLAKLSIV 324
+QL GLL+KL +V
Sbjct: 320 VQLTGLLSKLCLV 332
>sp|P53034|RFC2_DROME Replication factor C subunit 2 OS=Drosophila melanogaster GN=RfC4
PE=2 SV=1
Length = 331
Score = 416 bits (1070), Expect = e-116, Method: Compositional matrix adjust.
Identities = 195/314 (62%), Positives = 243/314 (77%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PW+EKYRP K +IVGN D VARL + A GN PN+I+AGPPG GKTT+I LA LLG
Sbjct: 16 LPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLG 75
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
+Y+EAV+ELNAS++RGIDVVRNKIKMFAQ+KVTLP G+HK+V+LDEADSMT GAQQALR
Sbjct: 76 DSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALR 135
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTMEIYS++TRFALACN S KIIEPIQSRCA++RF++LSD ++L++L+ V + EK+ Y
Sbjct: 136 RTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTE 195
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GLEAI+FTA GDMRQ LNNLQ+T GF + ENVFKVCD+PHP ++ M+ +
Sbjct: 196 DGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAANDI 255
Query: 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
A L +L+ LGYSP DII +FR+ K + EHLKL+F++E G HM+I DG+ S L
Sbjct: 256 HKAYKILAKLWKLGYSPEDIIANIFRVCKRINIDEHLKLDFIREIGITHMKIIDGINSLL 315
Query: 313 QLCGLLAKLSIVRE 326
QL LLAKL I E
Sbjct: 316 QLTALLAKLCIAAE 329
>sp|O94449|RFC4_SCHPO Replication factor C subunit 4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc4 PE=1 SV=1
Length = 342
Score = 414 bits (1063), Expect = e-115, Method: Compositional matrix adjust.
Identities = 192/318 (60%), Positives = 252/318 (79%), Gaps = 1/318 (0%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
++S AY++PWVEKYRP + DIVGN + + RL +IA++GNMP+L+++G PG GKTTSIL
Sbjct: 14 NNSVAYELPWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILC 73
Query: 66 LAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
LAH LLGP Y+E V+ELNASD+RGIDVVRN+IK FAQKKV LPPG+HK+++LDEADSMTA
Sbjct: 74 LAHALLGPAYKEGVLELNASDERGIDVVRNRIKAFAQKKVILPPGRHKIIILDEADSMTA 133
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
GAQQALRRTMEIYSN+TRFALACN S+KIIEPIQSRCAI+R+SRL+D+++L RL+ + +
Sbjct: 134 GAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKA 193
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
EKV Y +GL A+I TA+GDMRQA+NNLQ+T +GF VN ENVF+V DQP P+ + M+
Sbjct: 194 EKVNYTDDGLAALIMTAEGDMRQAVNNLQSTVAGFGLVNGENVFRVADQPSPVAIHAMLT 253
Query: 246 NVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHMRI 304
G D A L+ ++DLG+S DI+T +FR++K + + E +LE +KE G HM I
Sbjct: 254 ACQSGNIDVALEKLQGIWDLGFSAVDIVTNMFRVVKTMDSIPEFSRLEMLKEIGQTHMII 313
Query: 305 CDGVGSYLQLCGLLAKLS 322
+GV + LQL GL+ +L+
Sbjct: 314 LEGVQTLLQLSGLVCRLA 331
>sp|P40339|RFC4_YEAST Replication factor C subunit 4 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC4 PE=1 SV=1
Length = 323
Score = 414 bits (1063), Expect = e-115, Method: Compositional matrix adjust.
Identities = 196/318 (61%), Positives = 250/318 (78%), Gaps = 5/318 (1%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
S + + +PWVEKYRP + DIVGN + + RL IA+DGNMP++I++G PG GKTTS+
Sbjct: 2 SKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHC 61
Query: 66 LAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125
LAHELLG +Y + V+ELNASDDRGIDVVRN+IK FAQKK+ LPPGKHK+V+LDEADSMTA
Sbjct: 62 LAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA 121
Query: 126 GAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185
GAQQALRRTME+YSNSTRFA ACN S+KIIEP+QSRCAI+R+S+LSDE++L RL+ +++
Sbjct: 122 GAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKL 181
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E V Y +GLEAIIFTA+GDMRQA+NNLQ+T +G VN +NVFK+ D PHPL VK M
Sbjct: 182 EDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKM-- 239
Query: 246 NVLEGKFDDACSGLK-QLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMR 303
+L +D+ L+ L+ GYS DI+TT FR+ KN ++ E ++LE +KE G HMR
Sbjct: 240 -LLASNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMR 298
Query: 304 ICDGVGSYLQLCGLLAKL 321
I +GVG+YLQL +LAK+
Sbjct: 299 ILEGVGTYLQLASMLAKI 316
>sp|Q9UXF5|RFCS_SULSO Replication factor C small subunit OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rfcS
PE=1 SV=1
Length = 330
Score = 278 bits (710), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 152/322 (47%), Positives = 205/322 (63%), Gaps = 9/322 (2%)
Query: 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILAL 66
S+ +I W EKYRP + DIV + + RL ++ NMP+L+ AGPPGTGKTT+ LAL
Sbjct: 2 STKVEEILWAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALAL 61
Query: 67 AHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMT 124
H+L G NY E +ELNASD+RGIDV+RNK+K FA+ T+ PG KVV+LDEAD+MT
Sbjct: 62 VHDLYGDNYTEYFLELNASDERGIDVIRNKVKEFAR---TVIPGDIPFKVVLLDEADNMT 118
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
A AQQALRRTME+Y+ +TRF LACN SKIIEPIQSR A+ RF L E++++RL+ + +
Sbjct: 119 ADAQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIYIAK 178
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EK Y + LE I GDMR+++N LQA S + ++ E VFKV P V+ M+
Sbjct: 179 NEKAEYDQKALETIYDITMGDMRKSINILQAA-SAYGKISVEAVFKVLGLAQPKEVREMI 237
Query: 245 RNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYE--MAEHLKLEFMKEAGFAH 301
L+GKF A L+ L G S DI+ + R I + E ++E L++ + G
Sbjct: 238 NLALQGKFTQARDKLRTLLITYGLSGEDIVKQIHREITSSEIQISEELRVLLLDYIGETE 297
Query: 302 MRICDGVGSYLQLCGLLAKLSI 323
RI +G +QL LLAK++I
Sbjct: 298 FRIIEGADDEIQLSALLAKMAI 319
>sp|Q975D3|RFCS_SULTO Replication factor C small subunit OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rfcS PE=3
SV=1
Length = 327
Score = 274 bits (700), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 153/320 (47%), Positives = 203/320 (63%), Gaps = 9/320 (2%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
+I W EKYRP + DIV D V RL +D NMP+L+ +GPPGTGKTT+ LAL H+L
Sbjct: 6 EILWAEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLY 65
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQ 129
G NYR+ +ELNASD+RGIDV+RNK+K FA+ T+ G KVV+LDEAD+MTA AQQ
Sbjct: 66 GDNYRQYFLELNASDERGIDVIRNKVKEFAR---TVAGGNVPFKVVLLDEADNMTADAQQ 122
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRRTME+Y+ +TRF LACN SKIIEPIQSR A+ RF L E++++RL + + EKV
Sbjct: 123 ALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLAYIAKNEKVE 182
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
Y + LE I GDMR+A+N LQA+ S + V E V+KV P ++ M+ L+
Sbjct: 183 YDQKALETIYDITQGDMRKAINILQAS-SVYGKVTVEAVYKVLGLAQPKEIREMIMLALQ 241
Query: 250 GKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYE--MAEHLKLEFMKEAGFAHMRICD 306
G F A L++L + G S DII + R + E + + LK+ + G RI +
Sbjct: 242 GNFLKAREKLRELLVNYGLSGEDIIKQIHREVTGNEINIPDDLKVLLVDYIGEVEYRIME 301
Query: 307 GVGSYLQLCGLLAKLSIVRE 326
G +QL LLAKL++ E
Sbjct: 302 GADDEIQLNALLAKLAVYGE 321
>sp|Q4JAB0|RFCS_SULAC Replication factor C small subunit OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rfcS PE=3 SV=1
Length = 325
Score = 270 bits (691), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 145/315 (46%), Positives = 202/315 (64%), Gaps = 5/315 (1%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
+I W EKYRP + +IV + V RL ++ NMP+L+ AGPPGTGKTT+ LAL +L
Sbjct: 4 EILWAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLY 63
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQAL 131
G NYR+ +ELNASD+RGIDV+RNK+K FA + V KV++LDEAD+MTA AQQAL
Sbjct: 64 GNNYRQYFLELNASDERGIDVIRNKVKEFA-RTVASNNVPFKVILLDEADNMTADAQQAL 122
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTME+Y+ +TRF LACN SKIIEPIQSR A+ RF L E++++RL+ + + EKV +
Sbjct: 123 RRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNEKVEFD 182
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
P+G+E I GDMR+A+N +QA S + + E V+KV P ++ M+ L GK
Sbjct: 183 PKGIETIFDITQGDMRKAINVIQAA-SAYGKITVETVYKVLGLAQPKEIREMLHLALSGK 241
Query: 252 FDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMA--EHLKLEFMKEAGFAHMRICDGV 308
F A L++L + G S DII + + + E++ + LK+ + AG RI +G
Sbjct: 242 FLQARDKLRELLINYGLSGEDIIKQVHKELTGNEISIPDDLKVILVDYAGEVEFRIMEGA 301
Query: 309 GSYLQLCGLLAKLSI 323
+QL LAKL++
Sbjct: 302 DDEIQLSAFLAKLAL 316
>sp|A3DNV9|RFCS_STAMF Replication factor C small subunit OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1
Length = 329
Score = 269 bits (688), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 145/326 (44%), Positives = 210/326 (64%), Gaps = 9/326 (2%)
Query: 4 SSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSI 63
SSS ++ W EKYRP + +IV + V+RL ++ NMP+L+ AGPPGTGKTT+
Sbjct: 2 SSSREVIAELLWAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAA 61
Query: 64 LALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKV--TLPPGKHKVVVLDEAD 121
LAH+L G NYR+ ++ELNASD+RGIDV+R+K+K FA+ +V +P K+V+LDEAD
Sbjct: 62 HCLAHDLFGENYRQYMLELNASDERGIDVIRSKVKEFARTRVAANIP---FKIVLLDEAD 118
Query: 122 SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181
+MTA AQQALRR ME+Y+ +TRF L N SKIIEPIQSRCA+ RF+ L E+++SRL
Sbjct: 119 NMTADAQQALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKW 178
Query: 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241
+ ++EKV E LEAI ++GDMR+A+N LQA + V ++V+KV HP ++
Sbjct: 179 IAEQEKVEIDEEALEAIHDLSEGDMRRAINILQAA-AALGKVTVDSVYKVVGLAHPREIR 237
Query: 242 NMVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRII--KNYEMAEHLKLEFMKEAG 298
M++ L G F+DA L++L + G S D+I + R I + ++ + K+ AG
Sbjct: 238 QMIQLALAGNFNDAREKLRELMINYGLSGVDVIKQVHREIFSTDIKIPDEFKIIIADLAG 297
Query: 299 FAHMRICDGVGSYLQLCGLLAKLSIV 324
R+ +G +QL LA+L+ +
Sbjct: 298 EIQFRLVEGADDEIQLNAFLARLAFL 323
>sp|A6US36|RFCS_METVS Replication factor C small subunit OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rfcS PE=3 SV=1
Length = 315
Score = 261 bits (666), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 134/312 (42%), Positives = 197/312 (63%), Gaps = 2/312 (0%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + ++VG+ + + RL +MP+L+ +G PG GKTT+ L LA +L G
Sbjct: 4 PWVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYGN 63
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
++E +ELN+SD+RGIDV+R K+K FA+ K + KV+ LDE+D++T+ AQ ALRR
Sbjct: 64 TWKENFLELNSSDERGIDVIRTKVKDFARTK-PIGDAPFKVIFLDESDALTSDAQNALRR 122
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
TME YS+ RF L+CN SKII PIQSRCAI RFS L E+++ L + ++E +
Sbjct: 123 TMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVKNLKEISEKESINVEKS 182
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
G++AII+ ++GDMR+A+N LQ + + +N+ ++KV + P +K M L GKF
Sbjct: 183 GMDAIIYVSEGDMRKAINVLQTGAAVSKNINETVIYKVASKARPDEIKKMTELALNGKFV 242
Query: 254 DACSGL-KQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
+A L K + D G S DII +FR + N E++E K+ ++ G RI +G +
Sbjct: 243 EAREQLYKLMIDWGMSGEDIIIQIFREVPNLEISEKEKVHLVEAIGECDFRIVEGANERI 302
Query: 313 QLCGLLAKLSIV 324
QL LLAK+ I+
Sbjct: 303 QLSALLAKMGIL 314
>sp|A6VJ61|RFCS_METM7 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=rfcS PE=3 SV=1
Length = 315
Score = 260 bits (664), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 137/314 (43%), Positives = 198/314 (63%), Gaps = 6/314 (1%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + ++VG+ + + RL +MP+L+ +G PG GKTT+ LALA +L G
Sbjct: 4 PWVEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGE 63
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQAL 131
+RE +ELN+SD+RGIDV+R K+K FA+ K P G KV+ LDE+D++T+ AQ AL
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTK---PIGDAPFKVIFLDESDALTSDAQNAL 120
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTME YS+ RF L+CN SKII PIQSRCAI RFS L E+++ L + ++E +
Sbjct: 121 RRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKEISEKENLTLE 180
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
G++AII+ ++GDMR+A+N LQ + V +E V+KV + P +K M + L GK
Sbjct: 181 KGGIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTQLALNGK 240
Query: 252 FDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
F ++ L L D G S DI+ +FR + N +++E K+ ++ G RI +G
Sbjct: 241 FVESREQLYNLMIDWGMSGEDILIQIFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNE 300
Query: 311 YLQLCGLLAKLSIV 324
+QL LLAK+ I+
Sbjct: 301 RIQLSALLAKMGIL 314
>sp|Q9HN27|RFCS_HALSA Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rfcS PE=3
SV=1
Length = 322
Score = 259 bits (662), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 198/310 (63%), Gaps = 3/310 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WVEKYRP ++ D+VG+ D RL ++P+L+ AGP GTGKT S +++A EL G +
Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDD 71
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+++ +ELNASD+RGIDVVR++IK FA + + ++V+ LDEAD++T AQ ALRRT
Sbjct: 72 WQDNFLELNASDERGIDVVRDRIKDFA--RSSFGGHNYRVIFLDEADALTDDAQSALRRT 129
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +SN+TRF L+CN SSKII+PIQSRCA+ RF++L D+ + + L + + E + + +G
Sbjct: 130 MEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGLEHTDDG 189
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+++ ADGDMR+A+N LQA + VN+E V+ + P ++ MV L G F
Sbjct: 190 IDALVYAADGDMRRAINALQAASATGDSVNEETVYAITATARPEEIETMVTEALGGDFAA 249
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L L + G + DII + R + +++ E + + G A RI +G +Q
Sbjct: 250 ARATLDDLLTNRGLAGGDIIDQVHRSVWEFDVEEAAAVRLLDRLGEADYRIAEGANERVQ 309
Query: 314 LCGLLAKLSI 323
L LLA +++
Sbjct: 310 LEALLASVAL 319
>sp|B0R7H7|RFCS_HALS3 Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rfcS PE=3 SV=1
Length = 322
Score = 259 bits (662), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 198/310 (63%), Gaps = 3/310 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WVEKYRP ++ D+VG+ D RL ++P+L+ AGP GTGKT S +++A EL G +
Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDD 71
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+++ +ELNASD+RGIDVVR++IK FA + + ++V+ LDEAD++T AQ ALRRT
Sbjct: 72 WQDNFLELNASDERGIDVVRDRIKDFA--RSSFGGHNYRVIFLDEADALTDDAQSALRRT 129
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +SN+TRF L+CN SSKII+PIQSRCA+ RF++L D+ + + L + + E + + +G
Sbjct: 130 MEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGLEHTDDG 189
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+++ ADGDMR+A+N LQA + VN+E V+ + P ++ MV L G F
Sbjct: 190 IDALVYAADGDMRRAINALQAASATGDSVNEETVYAITATARPEEIETMVTEALGGDFAA 249
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + L L + G + DII + R + +++ E + + G A RI +G +Q
Sbjct: 250 ARATLDDLLTNRGLAGGDIIDQVHRSVWEFDVEEAAAVRLLDRLGEADYRIAEGANERVQ 309
Query: 314 LCGLLAKLSI 323
L LLA +++
Sbjct: 310 LEALLASVAL 319
>sp|Q9YBS7|RFCS_AERPE Replication factor C small subunit OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rfcS PE=3 SV=3
Length = 325
Score = 259 bits (662), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 144/321 (44%), Positives = 202/321 (62%), Gaps = 7/321 (2%)
Query: 8 SSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67
SS ++ WVEKYRP + DIV V RL + NMP+L+ AGPPGTGKTT+ ALA
Sbjct: 2 SSVLEMLWVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALA 61
Query: 68 HELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGA 127
H+L G NYR+ ++ELNASD+RGI+V+R K+K FA+ + T P K+V+LDEAD+MT+ A
Sbjct: 62 HDLFGENYRQYMLELNASDERGINVIREKVKEFARSR-TPPEIPFKIVLLDEADNMTSDA 120
Query: 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEK 187
QQALRR ME+YS+ TRF L N SKII+PIQSRCA RF LS ++++ RL + + E
Sbjct: 121 QQALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENEG 180
Query: 188 VPYVPEGLEAIIFTADGDMRQALNNLQ-ATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246
V Y E L+AI ++GDMR+A+N LQ A+Y G V + V++V P V+ M+
Sbjct: 181 VDYEEEALDAIYEISEGDMRKAINVLQAASYLG--KVTVDAVYRVVGMAKPREVREMLAT 238
Query: 247 VLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYE--MAEHLKLEFMKEAGFAHMR 303
L+G F A S L++ + + G S D+ + R + + E M E L++ G H R
Sbjct: 239 ALKGDFTAARSLLRKIMIEYGMSGEDVARQIHRELFSTELKMPEELRVLAADYLGEVHYR 298
Query: 304 ICDGVGSYLQLCGLLAKLSIV 324
+ +G +QL LA L+++
Sbjct: 299 LVEGSDDDIQLSAFLAWLTMM 319
>sp|A9A6K6|RFCS_METM6 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=rfcS PE=3 SV=1
Length = 315
Score = 259 bits (661), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 138/314 (43%), Positives = 198/314 (63%), Gaps = 6/314 (1%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + ++VG+ + + RL +MP+L+ +G PG GKTT+ LALA +L G
Sbjct: 4 PWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGD 63
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQAL 131
+RE +ELN+SD+RGIDV+R K+K FA+ K P G KV+ LDE+D++T+ AQ AL
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTK---PIGDAPFKVIFLDESDALTSDAQNAL 120
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTME YS+ RF L+CN SKII PIQSRCAI RFS L E+++ L + ++E +
Sbjct: 121 RRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLE 180
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGK 251
G++AII+ ++GDMR+A+N LQ + V +E V+KV + P +K M + L GK
Sbjct: 181 KGGIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTQLALNGK 240
Query: 252 FDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310
F +A L L D G S DI+ +FR + N +++E K+ ++ G RI +G
Sbjct: 241 FVEAREQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNE 300
Query: 311 YLQLCGLLAKLSIV 324
+QL LLAK+ I+
Sbjct: 301 RIQLSALLAKMGIL 314
>sp|A4FZ74|RFCS_METM5 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=rfcS PE=3 SV=1
Length = 315
Score = 259 bits (661), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 136/312 (43%), Positives = 196/312 (62%), Gaps = 2/312 (0%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + ++VG+ + + RL +MP+L+ +G PG GKTT+ LALA +L G
Sbjct: 4 PWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGE 63
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
+RE +ELN+SD+RGIDV+R K+K FA+ K + KV+ LDE+D++T+ AQ ALRR
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTK-PIGDAPFKVIFLDESDALTSDAQNALRR 122
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
TME YS+ RF L+CN SKII PIQSRCAI RFS L E+++ L + ++E +
Sbjct: 123 TMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLEKG 182
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
G++AII+ ++GDMR+A+N LQ + V +E V+KV + P +K M L GKF
Sbjct: 183 GIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTHLALNGKFV 242
Query: 254 DACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
+A L L D G S DI+ +FR + N +++E K+ ++ G RI +G +
Sbjct: 243 EAKEQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERI 302
Query: 313 QLCGLLAKLSIV 324
QL LLAK+ I+
Sbjct: 303 QLSALLAKMGIL 314
>sp|Q6M044|RFCS_METMP Replication factor C small subunit OS=Methanococcus maripaludis
(strain S2 / LL) GN=rfcS PE=3 SV=1
Length = 315
Score = 259 bits (661), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 135/312 (43%), Positives = 197/312 (63%), Gaps = 2/312 (0%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + ++VG+ + + RL +MP+L+ +G PG GKTT+ LALA +L G
Sbjct: 4 PWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGD 63
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
+RE +ELN+SD+RGIDV+R K+K FA+ K + KV+ LDE+D++T+ AQ ALRR
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTK-PIGDAPFKVIFLDESDALTSDAQNALRR 122
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
TME YS+ RF L+CN SKII PIQSRCAI RFS L E+++ L + ++E +
Sbjct: 123 TMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKENLNLEKG 182
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
G++AII+ ++GDMR+A+N LQ + + +E V+KV + P +K M + L GKF
Sbjct: 183 GIDAIIYVSEGDMRKAINVLQTAAAVSDEITEEIVYKVASKARPDEIKKMTQLALNGKFV 242
Query: 254 DACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312
+A L L D G S DI+ +FR + N +++E K+ ++ G RI +G +
Sbjct: 243 EAREQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERI 302
Query: 313 QLCGLLAKLSIV 324
QL LLAK+ I+
Sbjct: 303 QLSALLAKMGIL 314
>sp|A1RWU7|RFCS_THEPD Replication factor C small subunit OS=Thermofilum pendens (strain
Hrk 5) GN=rfcS PE=3 SV=1
Length = 325
Score = 256 bits (655), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 142/320 (44%), Positives = 201/320 (62%), Gaps = 9/320 (2%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WVEKYRP + +IV + V RL ++ NMP+L+ AGPPGTGKTT+ LALAH+L G +
Sbjct: 6 WVEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDLYGES 65
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQALR 132
+R+ +ELNASD+RGIDV+R++IK +A+ TLP G K+V+LDEAD+MT AQQALR
Sbjct: 66 WRDNTLELNASDERGIDVIRSRIKDYAR---TLPIGDVPFKLVILDEADNMTGDAQQALR 122
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME++S +TRF L N +SKIIEPIQSRCA+ RF L + RL + Q+E +
Sbjct: 123 RTMELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDAFQRLRWIAQQEGITVDD 182
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
LEAI + GD+R+A+N LQA + R V +E V+ + P V+ M+ + L+G
Sbjct: 183 GALEAIWEESQGDLRKAINTLQAASAISRNVTEEVVYAALGRVKPKEVREMIESALKGNL 242
Query: 253 DDACSGLK-QLYDLGYSPTDIITTLFRII---KNYEMAEHLKLEFMKEAGFAHMRICDGV 308
+A L+ LY+ G S DII + R + K+ + + E + G + RI +G
Sbjct: 243 LEARDKLRLLLYNYGLSGVDIIRFIHREVLSQKSVRLDDATLAELLVLVGETNYRIVEGS 302
Query: 309 GSYLQLCGLLAKLSIVRETA 328
+QL LL+KL++V + A
Sbjct: 303 DDEIQLMALLSKLALVSKKA 322
>sp|Q5UZE5|RFCS_HALMA Replication factor C small subunit OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rfcS PE=3 SV=2
Length = 325
Score = 253 bits (646), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 125/321 (38%), Positives = 200/321 (62%), Gaps = 3/321 (0%)
Query: 3 SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTS 62
+ S S + + W+EKYRP + D++G+ + V RL ++ +++ +GP GTGKTT
Sbjct: 4 AESESRAGREEVWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTC 63
Query: 63 ILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122
A+A EL G ++RE +ELNASD+RGIDVVR++IK FA + + +++++ LDEAD+
Sbjct: 64 ATAIARELYGDDWREHFLELNASDERGIDVVRDRIKNFA--RTSFGGVEYRIIFLDEADA 121
Query: 123 MTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182
+T+ AQ ALRRTME +SN+ RF L+CN SS+II+PIQSRCA+ RFS L+D+ + + +
Sbjct: 122 LTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTI 181
Query: 183 VQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242
EE + +GL+A+++ ADGDMR+A+N LQA V++ V+ + P ++
Sbjct: 182 AAEEDIELTEDGLDALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRT 241
Query: 243 MVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAH 301
MV++ L+G F + + L +L + G + DII L R I +++ + + ++ G
Sbjct: 242 MVQSALDGDFTASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDDAAVRVLERIGETD 301
Query: 302 MRICDGVGSYLQLCGLLAKLS 322
RI G +QL +LA L+
Sbjct: 302 YRITRGANERVQLEAMLASLA 322
>sp|O28219|RFCS_ARCFU Replication factor C small subunit OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rfcS PE=1 SV=1
Length = 319
Score = 253 bits (645), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 131/313 (41%), Positives = 197/313 (62%), Gaps = 6/313 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
WVEKYRP + ++VG + + RL N+P+L+ +GPPGTGKT + +ALA +L G N
Sbjct: 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN 66
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGAQQALR 132
+R+ +E+NASD+RGIDVVR+KIK FA+ T P G K++ LDEAD++TA AQ ALR
Sbjct: 67 WRDNFIEMNASDERGIDVVRHKIKEFAR---TAPIGGAPFKIIFLDEADALTADAQAALR 123
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME+YS S RF L+CN S+IIEPIQSRCA+ RF + E + RL+ + ++E V
Sbjct: 124 RTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITE 183
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+GLEA+I+ + GD R+A+N LQ + V+ + ++++ P + +++ L+G F
Sbjct: 184 DGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTELIQTALKGNF 243
Query: 253 DDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
+A L +L + G S DI+ LFR I + + + LK++ + + G R+ +G
Sbjct: 244 MEARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDKLGEVDFRLTEGANER 303
Query: 312 LQLCGLLAKLSIV 324
+QL LA LS +
Sbjct: 304 IQLDAYLAYLSTL 316
>sp|Q3ITJ2|RFCS_NATPD Replication factor C small subunit OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=rfcS PE=3 SV=1
Length = 325
Score = 251 bits (642), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 124/294 (42%), Positives = 186/294 (63%), Gaps = 3/294 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + DIVG+ RL ++P+L+ AGP G GKTT+ A+A E+ G +
Sbjct: 14 WIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGDD 73
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+RE +ELNASD RGIDVVR++IK FA + + H+++ LDEAD++T+ AQ ALRRT
Sbjct: 74 WRENFLELNASDQRGIDVVRDRIKSFA--RASFGGYDHRIIFLDEADALTSDAQSALRRT 131
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME +S++TRF L+CN SS+II+PIQSRCA+ RFS L D + ++ ++ E + +G
Sbjct: 132 MEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAAVDEQIRIIADTEGIELTDDG 191
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
++A+++ ADGDMR+A+N LQA V++E V+ + P ++ MV ++G F
Sbjct: 192 VDALVYAADGDMRKAINGLQAAAVMGGTVDEEAVYTITSTARPEEIREMVTEAMDGDFTA 251
Query: 255 ACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDG 307
A S L+ L D+G + DII L R + +++ E ++ M+ G A RI G
Sbjct: 252 ARSQLETLLTDVGIAGGDIIDQLHRSVWEFDLEEREAVQLMERIGEADYRITAG 305
>sp|Q8SQM0|RFC4_ENCCU Replication factor C subunit 4 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RFC4 PE=1 SV=1
Length = 309
Score = 251 bits (640), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 130/303 (42%), Positives = 192/303 (63%), Gaps = 9/303 (2%)
Query: 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY 75
V KY+P+++ DIVGN + + ++ +MP+L+ GPPGTGKTT LA LLG
Sbjct: 5 VNKYQPSEIQDIVGNEATMELVSLMIESRDMPHLLFTGPPGTGKTTCAKILARRLLG--N 62
Query: 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTM 135
+E ++ELNASD+RGID VR IK FAQ++V + K+++LDEADSMT AQQA+RR M
Sbjct: 63 KEGLLELNASDERGIDTVRTTIKSFAQRRV--KDCEFKIIILDEADSMTTTAQQAMRRVM 120
Query: 136 EIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGL 195
EI+S+ RF L CNV +KI EPIQSRCAI+RF R+ IL RL + + E + E L
Sbjct: 121 EIHSSECRFILICNVFTKIFEPIQSRCAILRFDRIEQSVILKRLKEISEGEGIRITAEAL 180
Query: 196 EAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDA 255
+ ++ +DGDMRQ+LN LQA + V+Q+ + K+ P P ++ +++ +L+ + ++A
Sbjct: 181 DLVVELSDGDMRQSLNILQACINSPGTVDQDYIIKIIGLPSPKRIEKVLQRLLKREVEEA 240
Query: 256 CSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLC 315
++++ + P D+I + FR KN E E LK+ G A++RI +GV S LQ
Sbjct: 241 LEMFDEIWEEKFDPLDLINSFFRAAKNMESYELLKV-----IGLANLRISEGVNSRLQFY 295
Query: 316 GLL 318
G+
Sbjct: 296 GMF 298
>sp|Q8TSX5|RFCS_METAC Replication factor C small subunit OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rfcS
PE=3 SV=1
Length = 338
Score = 250 bits (638), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 134/328 (40%), Positives = 199/328 (60%), Gaps = 21/328 (6%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ + G + + RL N+P+L+ +GPPG GKT S +++A E+ G +
Sbjct: 15 WIEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74
Query: 75 -YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQAL 131
+RE ELNASD+RGID+VRNKIK FA+ T P G K++ LDEAD++TA AQ AL
Sbjct: 75 LWRENFTELNASDERGIDIVRNKIKNFAK---TAPIGGAPFKIIFLDEADALTADAQSAL 131
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTME +S++ RF L+CN SSKIIEPIQSRCA+ RF RLSDE I RL + ++ +
Sbjct: 132 RRTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLEYIAGDQGLSIT 191
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGF----RFVNQENVFKVCDQPHPLHVKNMVRNV 247
G EA+I+ A GDMR+A+N+LQA + F + +++E +++ +P +KN++
Sbjct: 192 EGGYEALIYVAQGDMRKAVNSLQA--AAFIDTDKSISRETIYRTTATANPEEIKNLIETA 249
Query: 248 LEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYE--------MAEHLKLEFMKEAG 298
L G F A L + LY+ G S DI+ ++R++ + + E + + G
Sbjct: 250 LRGNFRIARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMVLDLGLTERDIVALVDVIG 309
Query: 299 FAHMRICDGVGSYLQLCGLLAKLSIVRE 326
R+ +G +QL LLA ++ RE
Sbjct: 310 ETDFRLTEGASEKIQLEALLAHFALSRE 337
>sp|Q8PVY4|RFCS_METMA Replication factor C small subunit OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=rfcS PE=3 SV=1
Length = 338
Score = 249 bits (635), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 133/328 (40%), Positives = 201/328 (61%), Gaps = 21/328 (6%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ + G + + RL N+P+L+ +GPPG GKT S +++A E+ G +
Sbjct: 15 WIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74
Query: 75 -YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQAL 131
+RE ELNASD+RGID+VRNKIK FA+ T P G K++ LDEAD++T+ AQ AL
Sbjct: 75 LWRENFTELNASDERGIDIVRNKIKNFAK---TAPMGGAPFKIIFLDEADALTSDAQSAL 131
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTME +S++ RF L+CN SSKIIEPIQSRCA+ RF RLSD+ I RL + +E+ +
Sbjct: 132 RRTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKEQDLSIT 191
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGF----RFVNQENVFKVCDQPHPLHVKNMVRNV 247
G EA+I+ A GDMR+A+N+LQA + F + +++E +++ +P +KN++
Sbjct: 192 DGGYEALIYVAQGDMRKAVNSLQA--AAFIDVEKPISRETIYRTTATANPEEIKNLIETA 249
Query: 248 LEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYE--------MAEHLKLEFMKEAG 298
L G F A L + LY+ G S DI+ ++R++ + ++E + + G
Sbjct: 250 LRGNFRVARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMILDLGLSERDIVGLVDIIG 309
Query: 299 FAHMRICDGVGSYLQLCGLLAKLSIVRE 326
R+ +G +QL LLA ++ RE
Sbjct: 310 ETDFRLTEGASEKIQLEALLAHFALSRE 337
>sp|Q46C63|RFCS_METBF Replication factor C small subunit OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=rfcS PE=3 SV=1
Length = 334
Score = 243 bits (620), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 129/325 (39%), Positives = 199/325 (61%), Gaps = 21/325 (6%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ + G + + RL N+P+L+ +GPPG GKT S +++A E+ G +
Sbjct: 11 WIEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 70
Query: 75 -YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGAQQAL 131
+RE ELNASD+RGIDVVR KIK FA+ T P G + K++ LDEAD++T+ AQ AL
Sbjct: 71 LWRENFTELNASDERGIDVVRTKIKNFAK---TAPMGGAEFKIIFLDEADALTSDAQSAL 127
Query: 132 RRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV 191
RRTME +SN+ RF L+CN SS+IIEPIQSRCA+ RF RLSDE I RL + +++ +
Sbjct: 128 RRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRKRLEYIAKDQVLSIT 187
Query: 192 PEGLEAIIFTADGDMRQALNNLQATYSGF----RFVNQENVFKVCDQPHPLHVKNMVRNV 247
+G EA+++ + GDMR+A+N+LQA + F + +++ +++ +P ++N++
Sbjct: 188 EDGYEALVYVSQGDMRKAVNSLQA--AAFVEPNKSISRGTIYRTTATANPEDIRNLIETA 245
Query: 248 LEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYE--------MAEHLKLEFMKEAG 298
L G F A L + LY+ G S DI+ ++R I + ++E +E + G
Sbjct: 246 LRGNFRVARKELNRLLYEEGLSGEDIVGQIYRAISEMDNRMILDLGLSEKRIVELVDIIG 305
Query: 299 FAHMRICDGVGSYLQLCGLLAKLSI 323
R+ +G +QL LLA ++
Sbjct: 306 EIDFRLTEGATEKIQLEALLAHFAL 330
>sp|O26343|RFCS_METTH Replication factor C small subunit OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rfcS PE=1 SV=1
Length = 321
Score = 242 bits (617), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 128/313 (40%), Positives = 189/313 (60%), Gaps = 7/313 (2%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP K+ DIVG + RL + +MPNL+ GP G GKTT+ LALA E+LG
Sbjct: 7 PWVEKYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNLMFTGPAGVGKTTAALALAREILGE 66
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
+R+ +ELNASD RGID VR IK F + K P +++ LDE D+MT AQ ALRR
Sbjct: 67 YWRQNFLELNASDARGIDTVRTSIKNFCRLKPVGAP--FRIIFLDEVDNMTKDAQHALRR 124
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
ME+Y+ ++ F L+CN SSKII+PIQSRCAI RF L +I+ RL + ++E + Y
Sbjct: 125 EMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQIIKRLEYIAEKENLEYEAH 184
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
LE I++ A+GD+R+A+N LQ+ S + + +++ V + P V+ M++ +L+GKF
Sbjct: 185 ALETIVYFAEGDLRKAINLLQSAASLGEKITESSIYDVVSRARPKDVRKMIKTILDGKFM 244
Query: 254 DACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLK----LEFMKEAGFAHMRICDGV 308
+A L+++ L G S D++T +++ + M + + + G RI +G
Sbjct: 245 EARDMLREIMVLQGISGEDMVTQIYQELSRLAMEGEVDGDRYVGLIDAIGEYDFRIREGA 304
Query: 309 GSYLQLCGLLAKL 321
+QL LLA+
Sbjct: 305 NPRIQLEALLARF 317
>sp|Q0W037|RFCS_UNCMA Replication factor C small subunit OS=Uncultured methanogenic
archaeon RC-I GN=rfcS PE=3 SV=1
Length = 322
Score = 241 bits (616), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 124/315 (39%), Positives = 192/315 (60%), Gaps = 2/315 (0%)
Query: 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69
A D W EKYRP ++ D++G+ RL + GN+P+L+ +GPPG GKT +ALA E
Sbjct: 2 AEDEIWTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARE 61
Query: 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQ 129
L G + +ELNASD+RGIDVVRN IK FA + L K K++ LDEAD++T+ AQ
Sbjct: 62 LYGETWHSNFIELNASDERGIDVVRNNIKNFA-RTAPLGEAKFKIIFLDEADALTSDAQS 120
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRRTME Y+ + RF ++CN SSKIIEPIQSRCA+ RF L+ +I + + + + E +
Sbjct: 121 ALRRTMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITTGITRIAKNEGLK 180
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
+G++A+I+ A GDMR+A+N LQ+ + + + + +++ P +++M++ L
Sbjct: 181 IEKDGMDALIYVARGDMRRAINALQSAATIAKDITADVIYQTTSTAKPKEIEDMLKLALN 240
Query: 250 GKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGV 308
G+F D+ + L +L G S TDII ++R + + E + + + G A R+ +G
Sbjct: 241 GQFMDSRNKLDELLITYGLSGTDIIDQIYRSMFELGLDEDVLVALVDRIGEADFRLTEGA 300
Query: 309 GSYLQLCGLLAKLSI 323
+Q+ LLA +
Sbjct: 301 SERIQIEALLAHFKM 315
>sp|A7I8Y0|RFCS_METB6 Replication factor C small subunit OS=Methanoregula boonei (strain
6A8) GN=rfcS PE=3 SV=1
Length = 322
Score = 239 bits (610), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 182/310 (58%), Gaps = 6/310 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP K+ DIVG D V RL + GN+P+L+ G G GKTT+ + LA E G +
Sbjct: 8 WIEKYRPAKLADIVGQDDIVERLSSYVKSGNLPHLLFTGSAGVGKTTAAVTLAREFFGDS 67
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQALR 132
++ ELNASD+RGIDVVRN+IK FA+ T P G K++ LDEAD++T AQ ALR
Sbjct: 68 WQMNFRELNASDERGIDVVRNQIKEFAR---TRPAGDAAFKILFLDEADALTTDAQAALR 124
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME Y+ + RF L+CN SSKII+PIQSRCAI RF L + + + + E + P
Sbjct: 125 RTMESYAKTCRFILSCNYSSKIIDPIQSRCAIYRFRPLGPQAVKEEITRIAAREHLDVTP 184
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
E ++A+++ A GDMR+A+N LQ + V+ + P + ++ L G F
Sbjct: 185 EAMDAMVYIAQGDMRKAINALQGAAILSATIEAPMVYAITSNARPEEIGELLTLSLSGDF 244
Query: 253 DDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
D A + L +L + G +P ++I +R + +M LK+E + G R+ +G S
Sbjct: 245 DGAEALLTRLLRERGIAPNELINQCYRALTKRDMDRVLKVELIDALGETDFRLSEGASSD 304
Query: 312 LQLCGLLAKL 321
+Q+ L+A+
Sbjct: 305 IQMEALIARF 314
>sp|Q6L1I0|RFCS_PICTO Replication factor C small subunit OS=Picrophilus torridus (strain
ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)
GN=rfcS PE=3 SV=1
Length = 318
Score = 237 bits (605), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 127/311 (40%), Positives = 189/311 (60%), Gaps = 3/311 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W EKYRP ++ D++G + + L ++G++P+LI AGP GTGKT++ +AL EL G +
Sbjct: 5 WTEKYRPKRLDDVIGEDENINTLKSFVKNGDLPHLIFAGPAGTGKTSTAIALTIELFGDD 64
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++E +ELNASD+RGID++RN IK FA+ + + G K++ LDEAD +T AQ ALRRT
Sbjct: 65 WKENFLELNASDERGIDIIRNNIKDFAKIRPSNKLG-FKIIFLDEADQLTNEAQAALRRT 123
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME++ ++TRF +CN SSKII PIQSRC ++RF L E + +L + + EK +
Sbjct: 124 MEMFYSTTRFIFSCNYSSKIIPPIQSRCVVLRFRPLDKEAMERKLREIAKNEKFDIDDDS 183
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
L+AI +DGDMR+A+N +QA S + ++++ + + KN++ L G F D
Sbjct: 184 LDAIYEISDGDMRKAINVMQAIQSTGE-IKPSKIYEISGEINKNEYKNLISLSLNGAFSD 242
Query: 255 ACSGL-KQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A S L K L D G S DII + I+N +A KLE + RI G +Q
Sbjct: 243 AKSLLDKMLVDYGLSGIDIIRGMHSAIRNERIANRQKLEILIALAEFEFRISQGGSDNVQ 302
Query: 314 LCGLLAKLSIV 324
+ LLA++S +
Sbjct: 303 MDALLARISYI 313
>sp|A3CUX9|RFCS_METMJ Replication factor C small subunit OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=rfcS PE=3 SV=1
Length = 322
Score = 236 bits (603), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 186/313 (59%), Gaps = 2/313 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP ++ ++VG D V RL + GN+P+L+ G G GKTT+ +ALA E G +
Sbjct: 8 WIEKYRPRRLDEMVGQKDIVVRLQSYVKTGNLPHLLFTGSAGIGKTTAAVALAREFFGDS 67
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++ E+NASD+RGIDVVRN+IK FA+ L K++ LDEAD++T AQ ALRRT
Sbjct: 68 WQTNFREMNASDERGIDVVRNQIKEFARTS-PLAGATFKILFLDEADALTTDAQAALRRT 126
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME Y+ + RF L+CN SSKII+PIQSRCAI RF L E ++ + E +
Sbjct: 127 METYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEETRRIAAAEGLTVTEGA 186
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
L+AI++ A GDMR+A+N LQ +++E +F++ P + ++ + G+FD+
Sbjct: 187 LDAIVYVASGDMRKAINALQGAAILRTDIDEETIFEITATARPEEIDELLDLSIGGRFDE 246
Query: 255 ACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A L +L + G +P ++I +R + ++ LK++ + G R+ +G S +Q
Sbjct: 247 AEQALLELTHVRGIAPNELINQCYRALVQRDIDRTLKVKLIDALGETDFRLSEGASSDIQ 306
Query: 314 LCGLLAKLSIVRE 326
+ LLA+ + E
Sbjct: 307 MEALLARFVLAAE 319
>sp|A5UMF3|RFCS_METS3 Replication factor C small subunit OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=rfcS PE=3 SV=1
Length = 315
Score = 234 bits (596), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 127/313 (40%), Positives = 185/313 (59%), Gaps = 7/313 (2%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + DI+G V RL + +MPNL+ GP G GKTT+ +AL +LG
Sbjct: 4 PWVEKYRPQNLDDIIGQKQIVNRLQKYVGEESMPNLMFTGPAGVGKTTTAIALVKAILGE 63
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
+R+ +ELNASD RGID VRN IK F + K P +++ LDE D+MT AQ ALRR
Sbjct: 64 YWRQNFLELNASDARGIDTVRNDIKNFCRLKPVGAP--FRIIFLDEVDNMTKDAQHALRR 121
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
ME+Y+ + F L+CN SSKII+PIQSRCAI RF + EEI +RL + E+ Y
Sbjct: 122 EMEMYTKTASFILSCNYSSKIIDPIQSRCAIFRFGPIKGEEIANRLKYICTSERFEYTDG 181
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
G+EAI + A+GDMR+A+N LQA S + V+++ V++V + P V N++ L G F
Sbjct: 182 GIEAIEYFAEGDMRKAVNVLQAAASEGKQVDEDAVYEVVSKAKPQDVHNLITKALSGDFM 241
Query: 254 DACSGLKQLYDL-GYSPTDIITTLFRIIKNY----EMAEHLKLEFMKEAGFAHMRICDGV 308
A + L++ L G S D+++ +++ + +M + ++ ++ RI +G
Sbjct: 242 GARNLLRETMVLQGTSGEDMVSQIYQDVSKRVFEGKMEADIYIDLIEAIADCDFRIREGA 301
Query: 309 GSYLQLCGLLAKL 321
+QL LL +
Sbjct: 302 NPRIQLEALLTQF 314
>sp|Q2FQT9|RFCS_METHJ Replication factor C small subunit OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=rfcS PE=3 SV=1
Length = 323
Score = 233 bits (594), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 186/310 (60%), Gaps = 6/310 (1%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + DI+G + + RL MP+L+ G GTGKTT+ +ALA E G +
Sbjct: 8 WIEKYRPRVLEDIIGQQEIIERLRSYVAKREMPHLLFTGNAGTGKTTAAVALAREFFGED 67
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG--KHKVVVLDEADSMTAGAQQALR 132
++ ELNASD+RGIDVVRN+IK FA+ T P G K++ LDEAD++T AQ ALR
Sbjct: 68 WQMNFRELNASDERGIDVVRNQIKQFAR---TSPFGGSTFKILFLDEADALTTDAQSALR 124
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
RTME Y+ + RF L+CN S+KII+PIQSRCAI RF L + + + + ++ +
Sbjct: 125 RTMETYAQTCRFILSCNYSAKIIDPIQSRCAIYRFRPLGRQAVSEMVKRISADQNLTVTE 184
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
E ++AI + A GDMR+A+N LQ R ++ + +F + P + +++ L G F
Sbjct: 185 EVIDAIFYVAQGDMRKAINALQGAAILGRDISPDMIFAITATARPEEIDDLIDLSLAGNF 244
Query: 253 DDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A S L+ L+D G +P ++I+ L+R + ++ E +K+ + G R+ +G GS
Sbjct: 245 LGAGSSLQALLHDRGIAPQELISQLYRAVVKRDLPEAVKVRLIDSLGETDFRLSEGAGSD 304
Query: 312 LQLCGLLAKL 321
+Q+ L+AK
Sbjct: 305 IQMQSLIAKF 314
>sp|A2SQT3|RFCS_METLZ Replication factor C small subunit OS=Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z) GN=rfcS PE=3 SV=1
Length = 321
Score = 233 bits (594), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 125/309 (40%), Positives = 180/309 (58%), Gaps = 3/309 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W+EKYRP + ++VG D V RL +P+L+ G G GKTT +ALA E+ G
Sbjct: 8 WIEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAREMFGDT 67
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
+ ELNASD+RGIDVVRN+IK FA + L K++ LDEAD++T AQ ALRRT
Sbjct: 68 WNMNFRELNASDERGIDVVRNQIKQFA-RTAPLGDATFKILFLDEADALTQDAQAALRRT 126
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME Y+ + RF L+CN SSKII+PIQSRCAI RF L+DE I + + ++E +
Sbjct: 127 MENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEAISEEIARIAKKEGITIDEGA 186
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
AI + + GDMR+A+N LQ V EN++ + P + +++ LEG F+
Sbjct: 187 YVAITYVSLGDMRKAINALQGAAIVSDHVTAENIYAITSNAKPQEITDLLARCLEGDFET 246
Query: 255 ACSGLKQL-YDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHMRICDGVGSYL 312
A L L YD G +P +++ L+R I E + LK++ + G A R+ +G + +
Sbjct: 247 AERMLHALMYDKGIAPNELLNQLYREISRSETLDRRLKVDLIDHLGEADFRMSEGADADI 306
Query: 313 QLCGLLAKL 321
Q+ LLA++
Sbjct: 307 QMDALLARI 315
>sp|A4WLY0|RFCS2_PYRAR Replication factor C small subunit 2 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS2 PE=3 SV=1
Length = 322
Score = 228 bits (580), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 132/316 (41%), Positives = 179/316 (56%), Gaps = 12/316 (3%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++ W EKYRP ++V + ARL R GNMP+L+ GPPGTGKTT L LA EL
Sbjct: 3 ELFWFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELY 62
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQ 129
G +RE +ELNASD+RGI+V+R ++K FA+ T P GK K+V+LDEAD+MT+ AQQ
Sbjct: 63 GEYWRENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQ 119
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRR ME+Y+ +TRF L N S IIEPIQSR ++RFS L E + +RL + E V
Sbjct: 120 ALRRIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADNEGVK 179
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
+ LEAI GDMR+A+N LQ + + + +E V K P ++ + +
Sbjct: 180 ISDDALEAIYEFTQGDMRRAINALQIAATTGKEITEETVAKALGMVSPRLLRETLNDAFR 239
Query: 250 GKFDDACSGLKQLY----DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
G F A + Q+Y D G +I+ L R ++ E+LK E AH I
Sbjct: 240 GNFGKAAT---QIYGFVVDGGIGELEIVKQLHREALKLDVPEYLKPEIAYIIAEAHYAIL 296
Query: 306 DGVGSYLQLCGLLAKL 321
G Q+ G LAK+
Sbjct: 297 RGAHGLTQIYGALAKI 312
>sp|Q8ZWS2|RFCS2_PYRAE Replication factor C small subunit 2 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS2 PE=3 SV=1
Length = 319
Score = 228 bits (580), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 136/326 (41%), Positives = 186/326 (57%), Gaps = 15/326 (4%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++ W EKYRP ++V + ARL + GNMP+L+ GPPGTGKTT L LA EL
Sbjct: 3 ELFWFEKYRPRSFDEVVDLEEVKARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELY 62
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQ 129
G +RE +ELNASD+RGI+V+R ++K FA+ T P GK K+V+LDEAD+MT+ AQQ
Sbjct: 63 GEYWRENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQ 119
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRR MEIY+ +TRF L N S IIEPIQSR ++RFS L E + +RL + + E V
Sbjct: 120 ALRRIMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFARLRYIAENEGVK 179
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
+ LEAI GDMR+A+N LQ + + V +E V K P ++ + ++
Sbjct: 180 VSDDALEAIYEFTQGDMRRAINALQIAATVSKAVTEEVVAKALGMVSPRLLRETLYEAVK 239
Query: 250 GKFDDACSGLKQLY----DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
G F A + Q+Y D G +II + R + ++ E++K E AH I
Sbjct: 240 GSFGKAAT---QIYGFVADGGVGELEIIKQIHREMLRLDVQEYVKPEIAYIIAEAHYAIL 296
Query: 306 DGVGSYLQLCGLLAKLSIVRETAKAV 331
G Q+ G LAK VR K+V
Sbjct: 297 RGAHGLTQIYGALAK---VRRLLKSV 319
>sp|Q9HI47|RFCS_THEAC Replication factor C small subunit OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rfcS PE=3 SV=2
Length = 318
Score = 227 bits (579), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 190/311 (61%), Gaps = 7/311 (2%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W EKYRP + +I G + + +L +P+L+ AG GTGKT++ +ALA EL G +
Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFGDS 64
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++E ++E+NAS++ GIDV+RNKIK A+ K + P G K++ LDEAD +TA AQ ALRRT
Sbjct: 65 WKENMVEMNASNENGIDVIRNKIKDIARIKPSNPLG-FKILFLDEADQLTAEAQAALRRT 123
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
MEIYS +TRF +CN SSKII PIQSR ++RF + DE I +L + + E E
Sbjct: 124 MEIYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYISRKLQEIAKNEGFQIDEES 183
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
+ A++ + GDMR+A+N LQA Y+ ++ + ++++ P ++ M+ + G FD+
Sbjct: 184 MHALVEVSAGDMRKAINVLQAVYTSGE-ISPKKIYEIIGYASPEKIQKMISRAINGLFDE 242
Query: 255 A---CSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSY 311
A G+ +YD G S DI+ +L +++ ++ K+E +K A RI +G
Sbjct: 243 AREIVDGM-LIYD-GLSGIDIVRSLHSYVRSSMISPKQKIEIIKALADAEFRIVEGSNDR 300
Query: 312 LQLCGLLAKLS 322
+QL L+AKL+
Sbjct: 301 IQLDALIAKLA 311
>sp|Q2NH89|RFCS_METST Replication factor C small subunit OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=rfcS PE=3 SV=1
Length = 321
Score = 225 bits (574), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 131/323 (40%), Positives = 187/323 (57%), Gaps = 13/323 (4%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73
PWVEKYRP + D+VG V RL + ++PN++ G G GKTT LALA LLG
Sbjct: 4 PWVEKYRPQTLDDVVGQEQIVGRLKRYVEEKSLPNIMFTGFAGVGKTTCALALAKSLLGE 63
Query: 74 NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRR 133
+++ +ELNASD RGID VRN+IK F + K P +++ LDE D+MT AQQALRR
Sbjct: 64 YWQQNFLELNASDARGIDTVRNEIKSFCKLKAVGAP--FRIIFLDEVDNMTKDAQQALRR 121
Query: 134 TMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193
ME+Y+ ++ F L+CN SSKII+PIQSRCAI RFS + I+ RL + EE +
Sbjct: 122 EMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFSPIKAANIIKRLKYIASEEGIEAEQS 181
Query: 194 GLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253
LE I++ GDMR+++N LQA+ + V +E V+ V + P V+ ++ L F
Sbjct: 182 ALENIVYFTQGDMRKSINILQASTTTENTVTEEAVYDVISRAKPKDVRKIINKALNHDFM 241
Query: 254 DACSGLKQLYDL-GYSPTDIITTLFRIIKNYEM------AEHLKL-EFMKEAGFAHMRIC 305
+A L+ + + G S D+IT ++ + E +KL E+M E + RI
Sbjct: 242 EARDLLRDIMIIEGVSGDDLITQFYQEVAQMTQEELIPEVEFIKLMEYMSECDY---RIR 298
Query: 306 DGVGSYLQLCGLLAKLSIVRETA 328
+G LQL LL+K +V++ A
Sbjct: 299 EGSNPRLQLEALLSKFLLVKQDA 321
>sp|Q977Z9|RFCS_THEVO Replication factor C small subunit OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=rfcS PE=3 SV=2
Length = 318
Score = 224 bits (571), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 187/309 (60%), Gaps = 3/309 (0%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W EKYRP + +I G + + +L +P+L+ AG GTGKT++ +ALA EL G +
Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFGES 64
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRT 134
++E +E+NAS++ GIDV+RNKIK A+ + + P G K++ LDEAD +TA AQ ALRRT
Sbjct: 65 WKENFIEMNASNENGIDVIRNKIKDIARIRPSNPLG-FKILFLDEADQLTAEAQAALRRT 123
Query: 135 MEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG 194
ME+YS +TRF ACN SSKII PIQSR ++RF + DE I +L + + E E
Sbjct: 124 MEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAKNEGFTIDDES 183
Query: 195 LEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD 254
+EA++ + GDMR+A+N LQA Y+ ++ + ++++ P V ++ + G FD+
Sbjct: 184 MEAMVEVSGGDMRKAINVLQAVYTSGE-ISPKKIYEIIGYASPESVNKLISRAINGLFDE 242
Query: 255 ACSGL-KQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQ 313
A + K + + G S DI+ ++ I++ + K+E +K A RI +G +Q
Sbjct: 243 ARQIVDKMMIEDGLSGIDIVKSVHSIVRASVVPPKQKIEIIKALADAEFRIVEGSNDRIQ 302
Query: 314 LCGLLAKLS 322
L L+A+++
Sbjct: 303 LDALIARIA 311
>sp|Q9D0F6|RFC5_MOUSE Replication factor C subunit 5 OS=Mus musculus GN=Rfc5 PE=2 SV=1
Length = 339
Score = 224 bits (570), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/323 (37%), Positives = 186/323 (57%), Gaps = 3/323 (0%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
+++ A ++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA
Sbjct: 12 AAARARNLPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILA 71
Query: 66 LAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
A +L + V+ELNASDDRGID+VR I FA + G K+V+LDEAD+MT
Sbjct: 72 CAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMT 130
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VVQ
Sbjct: 131 QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQ 190
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EE V +G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++
Sbjct: 191 EENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANIL 250
Query: 245 RNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
+L F A + +L L G + DI+T + + + +++ + + R
Sbjct: 251 DWMLNQDFTTAYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIEYR 310
Query: 304 ICDGVGSYLQLCGLLAKLSIVRE 326
+ G +QL L+A + R+
Sbjct: 311 LSVGTSEKIQLSSLIAAFQVTRD 333
>sp|P60374|RFCS_NANEQ Replication factor C small subunit OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rfcS PE=3 SV=1
Length = 322
Score = 222 bits (566), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 128/319 (40%), Positives = 189/319 (59%), Gaps = 18/319 (5%)
Query: 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 74
W EKYRP ++ DI+ + L NMP+L+ AGPPGTGKTT+ LALAHEL G
Sbjct: 4 WTEKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELYGDA 63
Query: 75 YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQALR 132
+RE +ELNASD+RGIDV+R+K+K FA+ K P G K+V LDEAD++T AQQALR
Sbjct: 64 WRENFLELNASDERGIDVIRHKVKEFARAK---PIGDVPFKIVFLDEADALTRDAQQALR 120
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDE---EILSRLM----VVVQE 185
R ME YS STRF L+CN SKIIEPIQSR + +F L E E+++R++ ++++
Sbjct: 121 RIMEKYSQSTRFILSCNYFSKIIEPIQSRVTVFKFKPLEKEAFRELINRIVKGEGLILEN 180
Query: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245
E E + A+ A+GD+R+A+N LQA + + + ++++ P + ++
Sbjct: 181 E-----DEIINALYDIAEGDLRKAINILQAAAMMSKTITVDRLYEIASIAKPKEIDEVLN 235
Query: 246 NVLEGKFDDACSGLKQL-YDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRI 304
++G F +A S L L G S D+I + + + + +++ KL + + G RI
Sbjct: 236 KAMQGNFLEARSMLIDLMLKYGMSGEDVIKAIQKRVWSLPISDREKLMILDKIGDIEFRI 295
Query: 305 CDGVGSYLQLCGLLAKLSI 323
+G +QL LLA L +
Sbjct: 296 VEGADDLVQLDALLAWLGL 314
>sp|A1RV38|RFCS2_PYRIL Replication factor C small subunit 2 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS2 PE=3 SV=1
Length = 320
Score = 222 bits (565), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 182/316 (57%), Gaps = 12/316 (3%)
Query: 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71
++ W EKYRP ++V + +RL + GNMP+L+ GPPGTGKTT L LA EL
Sbjct: 3 ELFWFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELY 62
Query: 72 GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGK--HKVVVLDEADSMTAGAQQ 129
G +RE +ELNASD+RGI+V+R ++K FA+ T P GK K+V+LDEAD+MT+ AQQ
Sbjct: 63 GEYWRENTLELNASDERGINVIRERVKEFAR---TAPVGKAPFKLVILDEADNMTSDAQQ 119
Query: 130 ALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVP 189
ALRR MEIY+ +TRF L N S IIEPIQSR ++RF+ L E ++SRL + + E V
Sbjct: 120 ALRRIMEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVISRLRYIAENEGVK 179
Query: 190 YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249
+ LE I GDMR+A+N LQ + + + ++ V + P ++ ++ L+
Sbjct: 180 ISDDALETIYEFTQGDMRKAINALQIAAATEKEITEDVVARALGMVSPRLLRETLQEALK 239
Query: 250 GKFDDACSGLKQLY----DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC 305
G F A + Q+Y D G +II + R + ++ E++K E AH
Sbjct: 240 GNFSKAMT---QIYGFVVDGGVGELEIIRQIHREVLRLDVPEYVKPELAYIIAEAHYATL 296
Query: 306 DGVGSYLQLCGLLAKL 321
G Q+ G LAK+
Sbjct: 297 RGARGLTQIFGALAKI 312
>sp|Q5JHP2|RFCS_PYRKO Replication factor C small subunit OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rfcS PE=1
SV=1
Length = 866
Score = 221 bits (564), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 123/284 (43%), Positives = 174/284 (61%), Gaps = 13/284 (4%)
Query: 44 GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQK 103
GNMP ++ TT+ LALA EL G N+R +ELNASD+RGI+V+R K+K FA+
Sbjct: 591 GNMPTVV-------HNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFART 643
Query: 104 KVTLPPG--KHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSR 161
K P G K++ LDEAD++T AQQALRRTME++SN+ RF L+CN SSKIIEPIQSR
Sbjct: 644 K---PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSNNVRFILSCNYSSKIIEPIQSR 700
Query: 162 CAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFR 221
CAI RF L DE+I R+ + + E + EGL+AI++ A+GD+R+A+N LQA +
Sbjct: 701 CAIFRFRPLRDEDIAKRIRYIAENEGLELTEEGLQAILYVAEGDLRRAINVLQAAAALDT 760
Query: 222 FVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRII 280
+ ENVF V + P V+ M+ LEG F A L+ L G S D++ + + +
Sbjct: 761 KITDENVFLVASRARPEDVREMMTLALEGNFLKAREKLRDILLRQGLSGEDVLIQMHKEV 820
Query: 281 KNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324
N + E K+ + G + R+ +G +QL LLA+ +I+
Sbjct: 821 FNLPIPEDKKVALADKIGEYNFRLVEGANEMIQLEALLAQFTIM 864
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 32/46 (69%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
PWVEKYRP ++ DIVG V RL + G+MP+L+ AGPPG GK
Sbjct: 14 PWVEKYRPQRLEDIVGQDHIVKRLKHYVKTGSMPHLLFAGPPGVGK 59
>sp|P40937|RFC5_HUMAN Replication factor C subunit 5 OS=Homo sapiens GN=RFC5 PE=1 SV=1
Length = 340
Score = 221 bits (562), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 119/323 (36%), Positives = 186/323 (57%), Gaps = 3/323 (0%)
Query: 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65
+++ ++PWVEKYRP + D++ + D ++ + + +P+L+L GPPGTGKT++ILA
Sbjct: 13 AATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILA 72
Query: 66 LAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124
A +L + V+ELNASDDRGID++R I FA + G K+V+LDEAD+MT
Sbjct: 73 CAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILDEADAMT 131
Query: 125 AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184
AQ ALRR +E ++ +TRF L CN SKII +QSRC RF L+ E ++ RL VV+
Sbjct: 132 QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVE 191
Query: 185 EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMV 244
EEKV +G++A++ + GDMR+ALN LQ+T F V +E V+ P + N++
Sbjct: 192 EEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANIL 251
Query: 245 RNVLEGKFDDACSGLKQLYDL-GYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303
+L F A + +L L G + DI+T + + + +++ + + R
Sbjct: 252 DWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYR 311
Query: 304 ICDGVGSYLQLCGLLAKLSIVRE 326
+ G +QL L+A + R+
Sbjct: 312 LSVGTNEKIQLSSLIAAFQVTRD 334
>sp|Q8U4J3|RFCS_PYRFU Replication factor C small subunit OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rfcS PE=1
SV=1
Length = 852
Score = 220 bits (561), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 121/284 (42%), Positives = 176/284 (61%), Gaps = 13/284 (4%)
Query: 44 GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQK 103
GNMP ++ TT+ LALA EL G N+R +ELNASD+RGI+V+R K+K FA+
Sbjct: 576 GNMPTVV-------HNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFART 628
Query: 104 KVTLPPG--KHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSR 161
K P G K++ LDEAD++T AQQALRRTME++S++ RF L+CN SSKIIEPIQSR
Sbjct: 629 K---PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 685
Query: 162 CAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFR 221
CAI RF L DE+I RL + + E + EGL+AI++ A+GDMR+A+N LQA + +
Sbjct: 686 CAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDK 745
Query: 222 FVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRII 280
+ ENVF V + P ++ M+ L+G F A L++ L G S D++ + + +
Sbjct: 746 KITDENVFMVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEV 805
Query: 281 KNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324
N + E K+ + G + R+ +G +QL LLA+ +++
Sbjct: 806 FNLPIEEPKKVLLADKIGEYNFRLVEGANEIIQLEALLAQFTLI 849
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 32/46 (69%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
PWVEKYRP ++ DIVG V RL + G+MP+L+ AGPPG GK
Sbjct: 14 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGK 59
>sp|O57852|RFCS_PYRHO Replication factor C small subunit OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rfcS PE=3 SV=1
Length = 855
Score = 219 bits (559), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/284 (42%), Positives = 176/284 (61%), Gaps = 13/284 (4%)
Query: 44 GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQK 103
GNMP ++ TT+ LAL+ EL G N+R +ELNASD+RGI+V+R K+K FA+
Sbjct: 578 GNMPTVV-------HNTTAALALSRELFGENWRHNFLELNASDERGINVIREKVKEFART 630
Query: 104 KVTLPPG--KHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSR 161
K P G K++ LDEAD++T AQQALRRTME++S++ RF L+CN SSKIIEPIQSR
Sbjct: 631 K---PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 687
Query: 162 CAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFR 221
CAI RF L DE+I RL + + E + EGL+AI++ A+GDMR+A+N LQA + +
Sbjct: 688 CAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDK 747
Query: 222 FVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRII 280
+ ENVF V + P ++ M+ L+G F A L++ L G S D++ + + +
Sbjct: 748 KITDENVFMVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLIQMHKEV 807
Query: 281 KNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324
N + E K+ + G + R+ +G +QL LLA+ ++V
Sbjct: 808 FNLPIDEPTKVYLADKIGEYNFRLVEGANEMIQLEALLAQFTLV 851
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGK 59
PWVEKYRP ++ +IVG V RL + G+MP+L+ AGPPG GK
Sbjct: 16 PWVEKYRPQRLDEIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGK 61
>sp|O14003|RFC3_SCHPO Replication factor C subunit 3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc3 PE=1 SV=2
Length = 342
Score = 219 bits (559), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/312 (36%), Positives = 178/312 (57%), Gaps = 6/312 (1%)
Query: 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72
+PWVEKYRP + D+V + D ++ L +P+++ GPPGTGKT++ILA A ++ G
Sbjct: 23 LPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYG 82
Query: 73 PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALR 132
PNYR +MELNASDDRGID VR +IK FA + K+++LDEAD+MT AQ ALR
Sbjct: 83 PNYRNQLMELNASDDRGIDAVREQIKNFASTRQIF-ASTFKMIILDEADAMTLAAQNALR 141
Query: 133 RTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVP 192
R +E Y+ + RF + CN +KI IQSRC RF L +EI + V+Q E P
Sbjct: 142 RVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNIDP 201
Query: 193 EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252
+ A++ + GDMR+ALN LQA ++ + ++ ++ PHP + +++++ +F
Sbjct: 202 DAKMAVLRLSKGDMRKALNILQACHAAYDHIDVSAIYNCVGHPHPSDIDYFLKSIMNDEF 261
Query: 253 ---DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVG 309
+ S +KQ G + DI+T +F + E+ + K+ + + R+ G
Sbjct: 262 VIAFNTISSIKQ--QKGLALQDILTCIFEALDELEIKPNAKIFILDQLATIEHRMSFGCS 319
Query: 310 SYLQLCGLLAKL 321
+QL ++A +
Sbjct: 320 EKIQLSAMIASI 331
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,230,459
Number of Sequences: 539616
Number of extensions: 4775883
Number of successful extensions: 22337
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 800
Number of HSP's that attempted gapping in prelim test: 21519
Number of HSP's gapped (non-prelim): 1293
length of query: 331
length of database: 191,569,459
effective HSP length: 118
effective length of query: 213
effective length of database: 127,894,771
effective search space: 27241586223
effective search space used: 27241586223
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)