Query 020071
Match_columns 331
No_of_seqs 258 out of 2826
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 06:47:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0991 Replication factor C, 100.0 5.3E-59 1.2E-63 371.5 28.3 327 1-327 1-329 (333)
2 PLN03025 replication factor C 100.0 4.2E-54 9E-59 381.4 37.7 318 13-330 1-318 (319)
3 KOG0989 Replication factor C, 100.0 8.7E-52 1.9E-56 343.4 30.3 315 11-325 22-345 (346)
4 PRK06305 DNA polymerase III su 100.0 5.7E-48 1.2E-52 353.8 36.3 313 13-328 5-353 (451)
5 PRK14952 DNA polymerase III su 100.0 4.6E-47 1E-51 353.8 37.0 307 14-323 2-362 (584)
6 PRK14964 DNA polymerase III su 100.0 4.7E-47 1E-51 346.0 35.7 307 14-324 2-354 (491)
7 PRK08451 DNA polymerase III su 100.0 1E-46 2.2E-51 346.6 37.7 308 13-325 2-336 (535)
8 PRK09111 DNA polymerase III su 100.0 1E-46 2.2E-51 353.4 37.9 315 6-324 6-374 (598)
9 PRK14965 DNA polymerase III su 100.0 6.9E-47 1.5E-51 356.4 35.7 309 13-324 4-361 (576)
10 PRK14949 DNA polymerase III su 100.0 8.4E-47 1.8E-51 358.0 36.2 311 13-326 4-359 (944)
11 PRK14956 DNA polymerase III su 100.0 9.5E-47 2.1E-51 340.1 34.8 308 13-323 6-368 (484)
12 PRK14961 DNA polymerase III su 100.0 2.6E-46 5.6E-51 336.3 37.0 309 13-324 4-360 (363)
13 PRK14958 DNA polymerase III su 100.0 1.1E-46 2.3E-51 349.0 35.2 311 13-326 4-358 (509)
14 PRK14971 DNA polymerase III su 100.0 1.7E-46 3.7E-51 354.4 37.1 309 13-324 5-362 (614)
15 PRK06645 DNA polymerase III su 100.0 3.4E-46 7.4E-51 343.1 37.6 312 10-324 6-371 (507)
16 PRK07764 DNA polymerase III su 100.0 1.5E-46 3.3E-51 362.6 36.8 310 11-323 1-364 (824)
17 PRK14955 DNA polymerase III su 100.0 1.8E-46 3.9E-51 341.0 34.6 309 14-325 5-374 (397)
18 PRK00440 rfc replication facto 100.0 9.7E-46 2.1E-50 329.9 38.6 314 10-324 2-316 (319)
19 PRK14954 DNA polymerase III su 100.0 2.9E-46 6.3E-51 350.7 36.4 309 14-325 5-374 (620)
20 PRK07133 DNA polymerase III su 100.0 3.5E-46 7.6E-51 351.0 36.6 310 13-325 6-356 (725)
21 PRK05563 DNA polymerase III su 100.0 4.9E-46 1.1E-50 349.1 37.4 308 13-323 4-359 (559)
22 PRK07003 DNA polymerase III su 100.0 3.8E-46 8.2E-51 347.4 36.2 310 13-325 4-359 (830)
23 PRK14963 DNA polymerase III su 100.0 1E-45 2.2E-50 341.6 37.4 307 15-325 4-342 (504)
24 PRK07994 DNA polymerase III su 100.0 1.1E-45 2.3E-50 346.2 36.2 311 13-326 4-361 (647)
25 PRK14960 DNA polymerase III su 100.0 1.2E-45 2.6E-50 340.9 35.7 311 12-325 2-359 (702)
26 PRK12323 DNA polymerase III su 100.0 8.6E-46 1.9E-50 341.1 34.3 311 13-326 4-365 (700)
27 PRK14951 DNA polymerase III su 100.0 1.4E-45 3.1E-50 344.8 35.9 311 13-326 4-366 (618)
28 PRK06647 DNA polymerase III su 100.0 1.7E-45 3.8E-50 343.9 36.2 310 13-325 4-359 (563)
29 PRK14959 DNA polymerase III su 100.0 1.9E-45 4.2E-50 341.5 35.6 310 12-324 3-362 (624)
30 TIGR02397 dnaX_nterm DNA polym 100.0 2.6E-45 5.7E-50 331.7 35.6 307 13-322 2-355 (355)
31 PRK14953 DNA polymerase III su 100.0 4.6E-45 9.9E-50 336.3 36.8 309 12-324 3-354 (486)
32 PRK14962 DNA polymerase III su 100.0 5.4E-45 1.2E-49 334.3 36.1 308 14-324 3-333 (472)
33 PRK14957 DNA polymerase III su 100.0 7.3E-45 1.6E-49 336.1 36.3 312 12-326 3-360 (546)
34 PRK08691 DNA polymerase III su 100.0 9.9E-45 2.1E-49 337.9 35.6 310 13-325 4-359 (709)
35 PRK14970 DNA polymerase III su 100.0 6.8E-44 1.5E-48 322.9 37.0 308 13-323 5-348 (367)
36 PRK14948 DNA polymerase III su 100.0 4.4E-44 9.6E-49 337.9 36.8 310 12-324 3-362 (620)
37 PRK12402 replication factor C 100.0 1.2E-43 2.6E-48 318.7 37.1 306 13-321 3-336 (337)
38 PRK05896 DNA polymerase III su 100.0 7.6E-44 1.7E-48 329.2 34.1 269 11-282 2-291 (605)
39 PRK14969 DNA polymerase III su 100.0 9.4E-44 2E-48 331.5 34.8 311 13-326 4-360 (527)
40 COG2812 DnaX DNA polymerase II 100.0 2.4E-44 5.2E-49 326.8 29.5 310 13-325 4-361 (515)
41 PRK14950 DNA polymerase III su 100.0 2.6E-43 5.6E-48 333.9 36.8 307 14-323 5-360 (585)
42 COG2256 MGS1 ATPase related to 100.0 5.9E-40 1.3E-44 282.7 29.2 268 13-291 12-305 (436)
43 KOG2035 Replication factor C, 100.0 6.8E-39 1.5E-43 262.5 31.8 313 14-328 2-346 (351)
44 PHA02544 44 clamp loader, smal 100.0 1.8E-36 3.9E-41 269.5 35.1 300 9-325 5-313 (316)
45 KOG0990 Replication factor C, 100.0 6.1E-38 1.3E-42 262.3 22.3 320 7-326 23-352 (360)
46 PRK04132 replication factor C 100.0 2.4E-36 5.1E-41 289.9 34.0 274 50-324 568-844 (846)
47 PRK05564 DNA polymerase III su 100.0 5.7E-36 1.2E-40 265.0 32.4 280 22-323 1-312 (313)
48 PRK13342 recombination factor 100.0 2E-35 4.3E-40 270.5 31.4 263 14-287 1-282 (413)
49 PRK13341 recombination factor 100.0 1.4E-34 3E-39 276.8 31.8 271 10-290 13-313 (725)
50 PRK04195 replication factor C 100.0 4.4E-34 9.5E-39 266.3 31.1 295 13-321 2-310 (482)
51 PRK07993 DNA polymerase III su 100.0 7.5E-34 1.6E-38 250.6 29.3 282 33-328 10-326 (334)
52 PRK07399 DNA polymerase III su 100.0 1.8E-33 4E-38 246.4 30.0 271 23-323 2-312 (314)
53 PRK07940 DNA polymerase III su 100.0 3.1E-33 6.7E-38 251.2 29.8 293 23-325 3-393 (394)
54 KOG2028 ATPase related to the 100.0 2E-33 4.3E-38 238.7 22.4 269 12-287 125-431 (554)
55 PRK08058 DNA polymerase III su 100.0 3.7E-33 8.1E-38 247.4 25.0 288 22-322 2-327 (329)
56 PRK05707 DNA polymerase III su 100.0 3.9E-32 8.5E-37 239.1 30.1 279 37-326 12-326 (328)
57 PRK06871 DNA polymerase III su 100.0 1.7E-31 3.6E-36 233.2 31.3 277 33-323 10-321 (325)
58 PRK06964 DNA polymerase III su 100.0 2.1E-31 4.6E-36 234.1 32.0 273 33-324 9-340 (342)
59 PRK08769 DNA polymerase III su 100.0 9.1E-32 2E-36 234.5 26.5 276 31-328 10-313 (319)
60 PRK09112 DNA polymerase III su 100.0 5E-30 1.1E-34 227.6 33.1 237 17-262 15-288 (351)
61 PRK05917 DNA polymerase III su 100.0 3.2E-30 7E-35 220.1 28.4 258 31-328 3-280 (290)
62 PRK07471 DNA polymerase III su 100.0 4.2E-30 9.1E-35 229.3 29.6 293 19-324 13-363 (365)
63 PRK06090 DNA polymerase III su 100.0 5.8E-30 1.3E-34 222.9 28.9 275 33-324 11-316 (319)
64 PF05496 RuvB_N: Holliday junc 100.0 6.4E-31 1.4E-35 213.2 18.6 197 6-216 5-225 (233)
65 PRK07132 DNA polymerase III su 100.0 2.9E-28 6.2E-33 211.0 29.0 277 32-325 3-298 (299)
66 PRK08699 DNA polymerase III su 100.0 1.5E-27 3.3E-32 209.8 28.3 273 33-327 9-323 (325)
67 COG0470 HolB ATPase involved i 100.0 1.4E-27 3E-32 213.6 24.5 287 25-328 1-321 (325)
68 PRK07276 DNA polymerase III su 100.0 9.9E-27 2.1E-31 199.6 27.4 260 29-319 6-290 (290)
69 PRK05907 hypothetical protein; 100.0 2E-25 4.4E-30 194.8 30.9 274 33-324 6-311 (311)
70 TIGR00678 holB DNA polymerase 100.0 4.2E-27 9.1E-32 193.4 17.2 166 35-209 2-188 (188)
71 PF13177 DNA_pol3_delta2: DNA 99.9 5.7E-27 1.2E-31 186.8 15.1 140 29-171 1-162 (162)
72 PRK00080 ruvB Holliday junctio 99.9 9.9E-26 2.2E-30 200.9 22.7 210 9-232 9-247 (328)
73 PRK05629 hypothetical protein; 99.9 2.6E-24 5.7E-29 190.8 28.9 268 49-324 9-316 (318)
74 PRK07452 DNA polymerase III su 99.9 2.9E-24 6.2E-29 191.8 29.2 273 47-326 2-326 (326)
75 PRK07914 hypothetical protein; 99.9 3.8E-24 8.2E-29 189.9 29.7 271 48-326 7-318 (320)
76 TIGR02902 spore_lonB ATP-depen 99.9 1.4E-25 3E-30 210.4 20.8 223 12-235 52-332 (531)
77 COG2255 RuvB Holliday junction 99.9 1.4E-23 3.1E-28 173.6 23.3 200 15-228 16-244 (332)
78 TIGR00635 ruvB Holliday juncti 99.9 7.7E-24 1.7E-28 187.5 23.1 197 22-232 1-226 (305)
79 PRK06585 holA DNA polymerase I 99.9 3.8E-22 8.2E-27 179.3 32.2 283 37-327 9-340 (343)
80 PRK08487 DNA polymerase III su 99.9 2.3E-22 4.9E-27 179.0 29.9 280 35-326 4-327 (328)
81 KOG1969 DNA replication checkp 99.9 2.9E-23 6.4E-28 190.8 23.0 204 14-222 260-520 (877)
82 PRK05818 DNA polymerase III su 99.9 8.2E-23 1.8E-27 170.9 20.6 161 45-216 5-194 (261)
83 TIGR01128 holA DNA polymerase 99.9 2.3E-21 5E-26 171.5 27.0 254 62-322 3-302 (302)
84 PRK05574 holA DNA polymerase I 99.9 7.6E-21 1.7E-25 171.0 30.1 281 35-324 6-339 (340)
85 PRK08084 DNA replication initi 99.9 5.3E-22 1.2E-26 168.2 21.1 209 11-232 7-233 (235)
86 PRK06893 DNA replication initi 99.9 2.8E-21 6.1E-26 163.2 19.7 209 11-232 1-227 (229)
87 TIGR00602 rad24 checkpoint pro 99.9 2.2E-21 4.8E-26 182.8 20.8 207 9-217 68-328 (637)
88 PRK08727 hypothetical protein; 99.9 9E-21 2E-25 160.5 21.1 209 12-233 5-229 (233)
89 COG1223 Predicted ATPase (AAA+ 99.9 2.2E-21 4.7E-26 158.6 15.7 202 17-231 113-351 (368)
90 PTZ00112 origin recognition co 99.9 9E-20 1.9E-24 172.5 27.2 259 16-281 749-1055(1164)
91 TIGR02928 orc1/cdc6 family rep 99.9 1E-19 2.2E-24 165.3 26.4 278 14-297 7-338 (365)
92 PRK06581 DNA polymerase III su 99.9 5.8E-20 1.2E-24 150.2 21.7 177 34-216 2-191 (263)
93 PRK00411 cdc6 cell division co 99.9 3.5E-19 7.7E-24 163.4 26.8 274 25-299 30-351 (394)
94 PRK08903 DnaA regulatory inact 99.9 5.4E-20 1.2E-24 155.8 19.7 206 12-234 4-225 (227)
95 TIGR02881 spore_V_K stage V sp 99.9 2.3E-20 5E-25 161.1 17.5 189 23-217 4-235 (261)
96 TIGR02903 spore_lon_C ATP-depe 99.8 1.3E-19 2.9E-24 172.7 21.3 222 14-236 143-431 (615)
97 COG1466 HolA DNA polymerase II 99.8 3.1E-18 6.7E-23 152.7 28.7 282 36-324 5-332 (334)
98 TIGR03420 DnaA_homol_Hda DnaA 99.8 3.4E-19 7.4E-24 151.0 18.5 198 21-231 11-224 (226)
99 PRK05642 DNA replication initi 99.8 1E-18 2.2E-23 147.9 20.7 209 11-232 4-232 (234)
100 PRK06620 hypothetical protein; 99.8 6.5E-19 1.4E-23 146.7 18.9 194 11-231 1-212 (214)
101 CHL00181 cbbX CbbX; Provisiona 99.8 1.4E-18 3.1E-23 150.8 17.2 187 25-217 23-251 (287)
102 PRK09087 hypothetical protein; 99.8 2.1E-18 4.5E-23 144.8 16.4 200 10-233 5-220 (226)
103 TIGR02639 ClpA ATP-dependent C 99.8 2.5E-18 5.4E-23 168.1 18.6 216 12-232 169-426 (731)
104 COG1474 CDC6 Cdc6-related prot 99.8 6.6E-17 1.4E-21 144.4 24.1 276 16-298 11-326 (366)
105 COG1222 RPT1 ATP-dependent 26S 99.8 9.4E-18 2E-22 143.6 17.4 198 20-230 145-387 (406)
106 TIGR02880 cbbX_cfxQ probable R 99.8 1.7E-17 3.6E-22 144.4 16.5 186 26-217 23-250 (284)
107 PRK00149 dnaA chromosomal repl 99.8 1E-16 2.2E-21 148.9 22.7 208 19-233 115-347 (450)
108 TIGR03345 VI_ClpV1 type VI sec 99.8 2.9E-17 6.2E-22 161.7 18.9 198 12-217 174-407 (852)
109 PRK14087 dnaA chromosomal repl 99.8 5.8E-16 1.2E-20 142.7 25.5 207 20-233 110-346 (450)
110 PF03215 Rad17: Rad17 cell cyc 99.8 9.7E-17 2.1E-21 149.0 20.1 204 10-218 4-269 (519)
111 TIGR00362 DnaA chromosomal rep 99.7 6.2E-16 1.3E-20 142.0 23.2 203 23-232 108-334 (405)
112 TIGR01241 FtsH_fam ATP-depende 99.7 1.2E-16 2.7E-21 150.0 18.8 203 18-233 48-293 (495)
113 PRK14086 dnaA chromosomal repl 99.7 1.9E-15 4.2E-20 141.0 26.4 213 15-232 277-512 (617)
114 PF00308 Bac_DnaA: Bacterial d 99.7 5.9E-17 1.3E-21 135.6 14.6 188 23-217 6-213 (219)
115 PRK12422 chromosomal replicati 99.7 3E-16 6.5E-21 144.1 20.2 210 19-232 104-340 (445)
116 PRK14088 dnaA chromosomal repl 99.7 2.5E-15 5.3E-20 138.4 25.1 208 19-232 98-329 (440)
117 PRK03992 proteasome-activating 99.7 3.9E-16 8.5E-21 141.8 19.3 196 22-230 128-367 (389)
118 PRK14700 recombination factor 99.7 5E-16 1.1E-20 131.8 18.5 145 141-285 8-176 (300)
119 COG1224 TIP49 DNA helicase TIP 99.7 6.6E-16 1.4E-20 132.1 18.6 119 112-231 292-428 (450)
120 CHL00195 ycf46 Ycf46; Provisio 99.7 1.1E-15 2.4E-20 141.1 21.6 200 21-232 224-460 (489)
121 CHL00176 ftsH cell division pr 99.7 4.6E-16 1E-20 148.1 19.3 200 21-233 179-421 (638)
122 KOG1970 Checkpoint RAD17-RFC c 99.7 1.7E-15 3.6E-20 136.3 20.8 200 12-217 69-320 (634)
123 PTZ00361 26 proteosome regulat 99.7 5.1E-16 1.1E-20 141.3 17.3 204 14-230 172-419 (438)
124 KOG0730 AAA+-type ATPase [Post 99.7 5.8E-16 1.3E-20 142.1 17.6 183 20-216 429-648 (693)
125 TIGR02640 gas_vesic_GvpN gas v 99.7 9.5E-16 2.1E-20 132.2 17.4 187 32-230 9-252 (262)
126 PRK08485 DNA polymerase III su 99.7 2.1E-16 4.6E-21 125.9 12.0 133 76-215 25-170 (206)
127 TIGR00763 lon ATP-dependent pr 99.7 4.4E-16 9.6E-21 153.1 16.3 179 26-214 321-548 (775)
128 PTZ00454 26S protease regulato 99.7 2.5E-15 5.4E-20 136.0 19.4 197 21-230 141-381 (398)
129 TIGR01242 26Sp45 26S proteasom 99.7 3.6E-15 7.8E-20 135.0 17.6 202 21-231 118-359 (364)
130 KOG0733 Nuclear AAA ATPase (VC 99.7 3.4E-15 7.4E-20 135.6 17.2 176 23-211 188-401 (802)
131 PF06068 TIP49: TIP49 C-termin 99.7 2.7E-15 5.9E-20 130.3 14.9 103 112-215 279-394 (398)
132 TIGR03015 pepcterm_ATPase puta 99.7 1.7E-14 3.7E-19 125.5 19.9 215 13-232 11-263 (269)
133 PF05673 DUF815: Protein of un 99.7 2.1E-14 4.5E-19 118.8 18.9 189 18-217 20-246 (249)
134 PRK10787 DNA-binding ATP-depen 99.7 5E-15 1.1E-19 144.5 17.8 214 11-236 299-583 (784)
135 TIGR03346 chaperone_ClpB ATP-d 99.6 6.2E-15 1.3E-19 146.3 18.4 202 12-217 160-393 (852)
136 COG0593 DnaA ATPase involved i 99.6 1.3E-14 2.9E-19 129.3 18.0 209 18-232 79-310 (408)
137 TIGR03689 pup_AAA proteasome A 99.6 5.8E-15 1.2E-19 136.3 16.2 175 15-193 172-387 (512)
138 TIGR01243 CDC48 AAA family ATP 99.6 7.8E-15 1.7E-19 144.0 17.7 170 21-204 449-655 (733)
139 PRK10865 protein disaggregatio 99.6 7.7E-15 1.7E-19 145.1 17.3 199 12-218 165-399 (857)
140 PRK11034 clpA ATP-dependent Cl 99.6 1.6E-14 3.5E-19 140.0 17.4 199 14-217 175-406 (758)
141 PRK11034 clpA ATP-dependent Cl 99.6 1.7E-14 3.6E-19 139.9 17.3 179 26-215 459-710 (758)
142 TIGR01817 nifA Nif-specific re 99.6 3E-14 6.4E-19 135.3 18.8 209 18-229 189-439 (534)
143 CHL00095 clpC Clp protease ATP 99.6 1.2E-14 2.6E-19 143.9 16.4 199 14-217 168-398 (821)
144 TIGR03345 VI_ClpV1 type VI sec 99.6 2.3E-14 5E-19 141.4 18.1 184 25-216 566-826 (852)
145 TIGR02974 phageshock_pspF psp 99.6 5.3E-14 1.1E-18 124.9 17.7 188 27-217 1-230 (329)
146 CHL00095 clpC Clp protease ATP 99.6 4.1E-14 8.9E-19 140.2 18.4 182 25-215 509-776 (821)
147 PLN00020 ribulose bisphosphate 99.6 5.8E-14 1.3E-18 122.4 16.9 151 45-205 146-331 (413)
148 PRK13407 bchI magnesium chelat 99.6 5.1E-14 1.1E-18 124.2 16.6 213 20-232 3-303 (334)
149 COG2204 AtoC Response regulato 99.6 4.7E-13 1E-17 121.2 22.2 205 22-229 138-385 (464)
150 TIGR02639 ClpA ATP-dependent C 99.6 1.1E-13 2.3E-18 135.7 19.3 179 25-215 454-706 (731)
151 KOG0734 AAA+-type ATPase conta 99.6 5.9E-14 1.3E-18 125.9 15.5 195 20-229 299-535 (752)
152 PRK10865 protein disaggregatio 99.6 1.7E-13 3.6E-18 135.8 20.3 185 23-215 566-823 (857)
153 KOG1942 DNA helicase, TBP-inte 99.6 1.9E-13 4E-18 114.3 17.2 119 112-231 297-434 (456)
154 TIGR03346 chaperone_ClpB ATP-d 99.6 1.5E-13 3.2E-18 136.6 19.3 184 25-216 565-821 (852)
155 KOG0731 AAA+-type ATPase conta 99.6 1.7E-13 3.7E-18 129.6 18.5 200 21-232 307-550 (774)
156 PRK11608 pspF phage shock prot 99.6 3E-13 6.4E-18 120.2 18.9 192 23-217 4-237 (326)
157 TIGR02329 propionate_PrpR prop 99.6 2.3E-13 5E-18 127.3 18.7 207 21-230 208-465 (526)
158 KOG0733 Nuclear AAA ATPase (VC 99.6 3.8E-13 8.3E-18 122.5 18.8 184 22-213 508-729 (802)
159 PRK10733 hflB ATP-dependent me 99.5 1.7E-13 3.8E-18 131.9 16.9 204 15-231 142-388 (644)
160 KOG0738 AAA+-type ATPase [Post 99.5 2.3E-13 4.9E-18 117.9 15.6 170 22-204 209-415 (491)
161 PRK15424 propionate catabolism 99.5 3.1E-13 6.8E-18 126.3 17.8 195 22-217 216-462 (538)
162 PF00004 AAA: ATPase family as 99.5 4.7E-14 1E-18 108.9 10.1 106 49-165 1-127 (132)
163 COG0466 Lon ATP-dependent Lon 99.5 3.4E-13 7.3E-18 125.4 17.3 214 11-234 300-583 (782)
164 COG3829 RocR Transcriptional r 99.5 3.7E-13 8E-18 122.0 16.9 207 20-229 240-491 (560)
165 PRK10820 DNA-binding transcrip 99.5 5.3E-13 1.1E-17 125.8 18.7 206 20-228 199-447 (520)
166 KOG2227 Pre-initiation complex 99.5 2.5E-12 5.4E-17 114.2 21.0 190 25-216 150-375 (529)
167 CHL00081 chlI Mg-protoporyphyr 99.5 1.1E-12 2.3E-17 116.0 18.8 217 15-231 6-318 (350)
168 COG1221 PspF Transcriptional r 99.5 2.2E-13 4.8E-18 121.2 14.4 194 22-217 75-306 (403)
169 KOG0727 26S proteasome regulat 99.5 7.7E-13 1.7E-17 108.5 16.2 160 18-189 147-345 (408)
170 COG0542 clpA ATP-binding subun 99.5 4E-13 8.6E-18 128.1 16.5 184 26-215 492-749 (786)
171 COG0464 SpoVK ATPases of the A 99.5 6.9E-13 1.5E-17 125.1 18.0 182 22-215 239-457 (494)
172 KOG0743 AAA+-type ATPase [Post 99.5 6.4E-13 1.4E-17 117.9 16.4 159 11-183 185-383 (457)
173 PRK11388 DNA-binding transcrip 99.5 8.2E-13 1.8E-17 128.3 18.5 206 22-230 322-566 (638)
174 PRK05342 clpX ATP-dependent pr 99.5 4.9E-13 1.1E-17 121.4 15.7 185 26-215 72-373 (412)
175 COG2607 Predicted ATPase (AAA+ 99.5 3.7E-12 8.1E-17 103.7 18.2 189 19-218 54-279 (287)
176 CHL00206 ycf2 Ycf2; Provisiona 99.5 7E-13 1.5E-17 134.7 17.2 173 49-233 1633-1875(2281)
177 TIGR01650 PD_CobS cobaltochela 99.5 3.9E-12 8.4E-17 110.7 19.2 177 19-202 39-252 (327)
178 TIGR02030 BchI-ChlI magnesium 99.5 2.1E-12 4.6E-17 114.2 17.5 209 23-231 2-305 (337)
179 KOG1968 Replication factor C, 99.5 3.2E-13 6.9E-18 131.3 13.3 197 13-216 308-535 (871)
180 KOG0742 AAA+-type ATPase [Post 99.5 4.5E-13 9.8E-18 116.8 12.8 155 20-185 349-530 (630)
181 KOG2004 Mitochondrial ATP-depe 99.5 8.4E-13 1.8E-17 122.4 15.3 180 26-215 412-640 (906)
182 KOG1514 Origin recognition com 99.5 4.2E-12 9.2E-17 117.7 19.8 190 27-217 398-625 (767)
183 TIGR01243 CDC48 AAA family ATP 99.5 1.3E-12 2.9E-17 128.4 17.3 175 20-208 173-383 (733)
184 cd00009 AAA The AAA+ (ATPases 99.5 1.5E-12 3.2E-17 102.2 14.2 138 28-169 1-151 (151)
185 KOG0739 AAA+-type ATPase [Post 99.5 4.5E-13 9.7E-18 112.3 11.5 177 20-204 127-333 (439)
186 KOG0737 AAA+-type ATPase [Post 99.5 9.4E-13 2E-17 113.7 13.7 184 23-215 90-306 (386)
187 PRK13531 regulatory ATPase Rav 99.5 5.8E-12 1.3E-16 114.7 19.5 201 25-229 20-278 (498)
188 PRK05022 anaerobic nitric oxid 99.5 4.6E-12 1E-16 119.4 19.5 192 23-217 185-417 (509)
189 KOG0652 26S proteasome regulat 99.5 1.3E-12 2.9E-17 107.5 13.6 172 20-204 165-375 (424)
190 COG3604 FhlA Transcriptional r 99.5 1.9E-12 4.1E-17 116.0 15.4 202 23-227 221-464 (550)
191 TIGR00382 clpX endopeptidase C 99.5 2E-12 4.4E-17 116.8 15.7 185 26-215 78-379 (413)
192 TIGR02442 Cob-chelat-sub cobal 99.4 8.1E-12 1.8E-16 120.4 19.7 209 23-231 2-300 (633)
193 PF06144 DNA_pol3_delta: DNA p 99.4 4.3E-13 9.4E-18 108.6 9.0 162 49-217 1-171 (172)
194 PF01637 Arch_ATPase: Archaeal 99.4 6.5E-12 1.4E-16 106.6 15.8 175 27-210 1-232 (234)
195 PRK15429 formate hydrogenlyase 99.4 1.2E-11 2.5E-16 121.0 19.5 193 22-217 373-606 (686)
196 KOG0726 26S proteasome regulat 99.4 9.9E-13 2.1E-17 109.9 10.2 186 16-215 176-404 (440)
197 KOG0728 26S proteasome regulat 99.4 8.6E-12 1.9E-16 102.3 13.9 161 15-187 137-335 (404)
198 KOG0736 Peroxisome assembly fa 99.4 4.5E-12 9.8E-17 118.4 13.8 168 22-203 669-876 (953)
199 COG0465 HflB ATP-dependent Zn 99.4 1E-11 2.3E-16 115.5 15.7 197 22-231 147-386 (596)
200 PF05621 TniB: Bacterial TniB 99.4 1.2E-10 2.5E-15 99.7 20.8 217 16-232 25-286 (302)
201 PRK10923 glnG nitrogen regulat 99.4 2.8E-11 6.1E-16 113.7 18.5 204 23-229 136-382 (469)
202 KOG0735 AAA+-type ATPase [Post 99.4 2.1E-11 4.5E-16 113.2 16.4 170 22-204 664-868 (952)
203 PHA02244 ATPase-like protein 99.4 7.3E-12 1.6E-16 110.2 11.4 128 36-172 111-263 (383)
204 COG0714 MoxR-like ATPases [Gen 99.4 3.4E-11 7.3E-16 107.6 15.9 157 16-181 15-200 (329)
205 KOG2680 DNA helicase TIP49, TB 99.3 1.2E-10 2.6E-15 98.0 17.8 118 112-230 289-424 (454)
206 TIGR02915 PEP_resp_reg putativ 99.3 8.8E-11 1.9E-15 109.6 18.8 203 23-228 137-382 (445)
207 KOG0740 AAA+-type ATPase [Post 99.3 3E-11 6.5E-16 108.0 14.2 176 17-204 145-354 (428)
208 TIGR00764 lon_rel lon-related 99.3 7.7E-11 1.7E-15 112.6 17.9 123 110-232 216-388 (608)
209 PF00158 Sigma54_activat: Sigm 99.3 1.9E-11 4E-16 97.8 11.3 121 27-150 1-143 (168)
210 PRK11331 5-methylcytosine-spec 99.3 9.3E-11 2E-15 106.0 16.9 151 24-181 174-370 (459)
211 TIGR00390 hslU ATP-dependent p 99.3 1.7E-11 3.6E-16 109.5 10.9 106 111-216 247-400 (441)
212 PRK15115 response regulator Gl 99.3 2.3E-10 5.1E-15 106.7 19.1 201 26-229 135-378 (444)
213 PRK05201 hslU ATP-dependent pr 99.3 8.6E-11 1.9E-15 105.1 14.9 106 111-216 249-402 (443)
214 KOG0729 26S proteasome regulat 99.3 3.5E-11 7.5E-16 99.6 11.4 177 23-213 175-394 (435)
215 PF07728 AAA_5: AAA domain (dy 99.3 2.2E-12 4.7E-17 100.6 3.3 110 48-162 1-139 (139)
216 smart00350 MCM minichromosome 99.3 6.7E-11 1.5E-15 111.4 13.6 155 26-184 204-401 (509)
217 TIGR01818 ntrC nitrogen regula 99.3 3.9E-10 8.4E-15 105.8 18.6 203 24-229 133-378 (463)
218 PRK11361 acetoacetate metaboli 99.3 4.8E-10 1E-14 105.1 19.0 204 23-229 141-387 (457)
219 PRK13765 ATP-dependent proteas 99.3 4.1E-10 8.9E-15 107.3 18.3 212 18-231 24-396 (637)
220 PF01078 Mg_chelatase: Magnesi 99.2 9.8E-12 2.1E-16 100.9 5.8 125 23-150 1-158 (206)
221 COG0542 clpA ATP-binding subun 99.2 2.3E-10 5.1E-15 109.4 15.9 200 13-217 158-390 (786)
222 KOG0730 AAA+-type ATPase [Post 99.2 4.5E-10 9.7E-15 103.9 16.6 171 25-207 184-387 (693)
223 PF07726 AAA_3: ATPase family 99.2 3.3E-11 7.1E-16 89.8 6.2 111 48-163 1-130 (131)
224 PF07724 AAA_2: AAA domain (Cd 99.2 3.1E-11 6.6E-16 96.9 6.1 101 48-150 5-129 (171)
225 TIGR02031 BchD-ChlD magnesium 99.2 1.2E-09 2.6E-14 104.3 17.7 189 41-232 11-255 (589)
226 smart00763 AAA_PrkA PrkA AAA d 99.1 2.3E-09 4.9E-14 94.6 16.2 187 14-201 39-348 (361)
227 PF14532 Sigma54_activ_2: Sigm 99.1 1.6E-10 3.4E-15 89.9 7.9 125 28-169 1-137 (138)
228 PRK10365 transcriptional regul 99.1 4.1E-09 8.8E-14 98.4 18.6 201 26-229 140-383 (441)
229 PF00931 NB-ARC: NB-ARC domain 99.1 1.4E-09 2.9E-14 95.6 14.5 183 30-216 1-206 (287)
230 PTZ00111 DNA replication licen 99.1 1.1E-09 2.4E-14 106.5 14.7 147 26-174 451-648 (915)
231 COG3283 TyrR Transcriptional r 99.1 1.1E-08 2.4E-13 88.3 19.1 202 22-228 201-442 (511)
232 TIGR00368 Mg chelatase-related 99.1 3.5E-09 7.5E-14 98.7 16.6 150 22-174 189-395 (499)
233 KOG0732 AAA+-type ATPase conta 99.1 2.4E-09 5.1E-14 104.8 15.9 187 20-213 260-481 (1080)
234 KOG2170 ATPase of the AAA+ sup 99.1 2.7E-09 6E-14 90.0 13.8 124 27-152 84-226 (344)
235 PF13173 AAA_14: AAA domain 99.1 1.5E-09 3.3E-14 83.2 10.9 119 48-175 4-127 (128)
236 KOG0735 AAA+-type ATPase [Post 99.1 1.7E-08 3.7E-13 94.3 18.1 188 25-216 408-620 (952)
237 COG3267 ExeA Type II secretory 99.0 2.5E-08 5.4E-13 82.7 17.1 211 13-228 19-266 (269)
238 KOG0651 26S proteasome regulat 99.0 1.9E-09 4.1E-14 91.3 10.7 128 22-161 129-291 (388)
239 COG1219 ClpX ATP-dependent pro 99.0 8.1E-09 1.8E-13 87.9 13.2 171 27-202 63-346 (408)
240 COG1239 ChlI Mg-chelatase subu 99.0 2.2E-08 4.7E-13 88.9 15.7 163 23-185 15-234 (423)
241 PRK12377 putative replication 99.0 3.3E-09 7.1E-14 90.0 9.4 126 17-151 66-206 (248)
242 KOG0744 AAA+-type ATPase [Post 99.0 4.2E-09 9.2E-14 89.7 9.8 158 24-183 141-340 (423)
243 KOG0482 DNA replication licens 99.0 7.8E-08 1.7E-12 86.6 18.2 200 26-232 343-635 (721)
244 PRK08116 hypothetical protein; 98.9 6.5E-09 1.4E-13 89.8 10.3 146 17-171 77-250 (268)
245 PF08542 Rep_fac_C: Replicatio 98.9 4.3E-08 9.2E-13 70.0 12.4 87 235-321 3-89 (89)
246 KOG1051 Chaperone HSP104 and r 98.9 1.5E-08 3.2E-13 98.6 12.5 117 26-151 563-711 (898)
247 PRK08181 transposase; Validate 98.9 1.3E-08 2.9E-13 87.4 10.3 104 37-151 99-209 (269)
248 KOG0745 Putative ATP-dependent 98.9 1.7E-08 3.6E-13 89.3 10.9 165 48-217 228-505 (564)
249 PRK04841 transcriptional regul 98.9 1.3E-06 2.7E-11 89.0 26.3 182 20-215 9-228 (903)
250 PF12774 AAA_6: Hydrolytic ATP 98.9 3.6E-07 7.7E-12 76.9 18.0 139 33-189 21-183 (231)
251 COG3284 AcoR Transcriptional a 98.9 2.4E-07 5.2E-12 86.2 18.3 175 49-227 339-549 (606)
252 COG0606 Predicted ATPase with 98.9 6E-09 1.3E-13 93.7 7.3 114 21-137 175-309 (490)
253 KOG0478 DNA replication licens 98.8 1.1E-07 2.3E-12 88.7 15.1 143 26-173 430-616 (804)
254 PF05729 NACHT: NACHT domain 98.8 4.5E-08 9.8E-13 78.3 11.3 136 49-184 3-164 (166)
255 PRK09862 putative ATP-dependen 98.8 1.9E-08 4.2E-13 93.4 9.6 151 22-175 188-393 (506)
256 PRK06526 transposase; Provisio 98.8 1.2E-08 2.6E-13 87.3 7.6 97 47-151 99-201 (254)
257 PRK07952 DNA replication prote 98.8 3.5E-08 7.7E-13 83.5 10.2 127 16-151 63-205 (244)
258 PRK04132 replication factor C 98.8 3.1E-09 6.8E-14 103.7 4.2 51 11-61 5-55 (846)
259 smart00382 AAA ATPases associa 98.8 1.9E-07 4.2E-12 72.2 13.0 95 47-150 3-125 (148)
260 PF12775 AAA_7: P-loop contain 98.8 4.3E-08 9.3E-13 84.8 9.6 145 36-184 25-194 (272)
261 KOG0741 AAA+-type ATPase [Post 98.8 2.7E-08 5.9E-13 90.0 8.5 156 44-203 251-437 (744)
262 KOG0480 DNA replication licens 98.8 7.4E-08 1.6E-12 89.0 11.3 135 24-164 344-521 (764)
263 PLN03210 Resistant to P. syrin 98.7 6.7E-07 1.4E-11 92.7 19.0 185 21-212 180-395 (1153)
264 PF14516 AAA_35: AAA-like doma 98.7 1E-05 2.2E-10 72.4 23.8 230 27-266 13-292 (331)
265 KOG0477 DNA replication licens 98.7 3.7E-08 8.1E-13 90.6 8.3 230 26-260 450-758 (854)
266 PF01695 IstB_IS21: IstB-like 98.7 2.8E-08 6.1E-13 80.4 6.6 93 47-150 48-149 (178)
267 PRK06921 hypothetical protein; 98.7 1.2E-07 2.7E-12 81.7 10.7 101 46-151 117-225 (266)
268 COG1220 HslU ATP-dependent pro 98.7 5.3E-07 1.1E-11 77.6 14.1 106 111-216 250-403 (444)
269 COG1241 MCM2 Predicted ATPase 98.7 6.3E-08 1.4E-12 92.2 9.4 134 26-165 287-463 (682)
270 PRK06835 DNA replication prote 98.7 1.9E-07 4.1E-12 82.7 11.1 129 33-169 168-316 (329)
271 PRK13406 bchD magnesium chelat 98.7 9.7E-07 2.1E-11 83.9 16.5 200 30-232 8-247 (584)
272 PF13401 AAA_22: AAA domain; P 98.7 2.2E-08 4.8E-13 77.0 4.5 101 48-150 6-125 (131)
273 KOG0736 Peroxisome assembly fa 98.7 6.3E-07 1.4E-11 84.8 14.4 168 27-204 403-596 (953)
274 COG5271 MDN1 AAA ATPase contai 98.6 3.4E-07 7.5E-12 92.5 12.8 146 43-202 886-1061(4600)
275 PRK08939 primosomal protein Dn 98.6 1.4E-07 3E-12 82.9 8.3 122 17-151 119-261 (306)
276 COG1618 Predicted nucleotide k 98.6 1.4E-06 2.9E-11 67.3 12.2 124 49-179 8-171 (179)
277 PF12169 DNA_pol3_gamma3: DNA 98.6 1.1E-06 2.4E-11 68.7 11.9 102 223-324 1-130 (143)
278 PHA00729 NTP-binding motif con 98.6 4.5E-07 9.8E-12 75.2 9.4 128 36-182 7-139 (226)
279 KOG0741 AAA+-type ATPase [Post 98.5 2.5E-06 5.5E-11 77.6 13.2 151 49-216 541-719 (744)
280 PRK09183 transposase/IS protei 98.5 3.1E-07 6.7E-12 79.0 7.2 96 48-151 104-206 (259)
281 PF07693 KAP_NTPase: KAP famil 98.5 1.7E-05 3.6E-10 71.0 18.7 75 110-185 171-265 (325)
282 COG1484 DnaC DNA replication p 98.5 5.6E-07 1.2E-11 77.0 8.2 102 46-151 105-209 (254)
283 COG2909 MalT ATP-dependent tra 98.5 7.2E-06 1.6E-10 78.8 16.1 177 20-205 14-226 (894)
284 COG4650 RtcR Sigma54-dependent 98.4 2.8E-05 6.1E-10 66.0 17.1 183 48-230 210-438 (531)
285 PF13191 AAA_16: AAA ATPase do 98.4 3.2E-07 6.9E-12 74.9 5.4 48 26-73 1-51 (185)
286 PF00910 RNA_helicase: RNA hel 98.4 2.9E-06 6.2E-11 62.7 8.4 72 49-137 1-79 (107)
287 KOG0481 DNA replication licens 98.3 3.3E-06 7.1E-11 76.5 9.8 133 26-165 332-508 (729)
288 KOG2543 Origin recognition com 98.3 1E-05 2.3E-10 71.0 12.3 183 26-217 7-231 (438)
289 PF00493 MCM: MCM2/3/5 family 98.3 1E-07 2.2E-12 85.0 -0.2 151 15-175 18-213 (331)
290 PF10443 RNA12: RNA12 protein; 98.3 5.6E-05 1.2E-09 68.1 16.8 106 111-217 148-283 (431)
291 PF03266 NTPase_1: NTPase; In 98.3 6.8E-07 1.5E-11 71.5 4.0 126 48-176 1-164 (168)
292 PHA02774 E1; Provisional 98.3 1E-05 2.2E-10 75.6 11.5 138 32-189 419-587 (613)
293 PF06309 Torsin: Torsin; Inte 98.2 8.1E-06 1.8E-10 61.0 7.9 57 26-82 26-89 (127)
294 COG1373 Predicted ATPase (AAA+ 98.2 0.00046 1E-08 63.2 20.5 132 33-177 25-161 (398)
295 PF13604 AAA_30: AAA domain; P 98.2 1E-05 2.2E-10 66.7 8.6 113 32-150 5-130 (196)
296 PRK04296 thymidine kinase; Pro 98.2 2.2E-05 4.7E-10 64.4 10.3 93 49-150 5-115 (190)
297 TIGR02688 conserved hypothetic 98.1 0.00021 4.6E-09 64.6 16.2 97 39-151 204-313 (449)
298 PF12780 AAA_8: P-loop contain 98.1 0.00025 5.4E-09 61.2 16.2 151 26-184 9-211 (268)
299 PRK10536 hypothetical protein; 98.1 2.9E-05 6.4E-10 65.6 10.1 121 23-150 53-212 (262)
300 PTZ00202 tuzin; Provisional 98.1 0.00028 6.1E-09 64.0 15.8 51 20-70 257-310 (550)
301 COG3899 Predicted ATPase [Gene 98.1 0.0017 3.7E-08 65.2 23.1 107 110-217 153-265 (849)
302 COG5271 MDN1 AAA ATPase contai 98.0 5.5E-05 1.2E-09 77.5 12.2 150 36-199 1535-1715(4600)
303 PF03969 AFG1_ATPase: AFG1-lik 98.0 9.7E-06 2.1E-10 72.8 5.9 115 48-170 64-201 (362)
304 PHA02624 large T antigen; Prov 98.0 5E-05 1.1E-09 71.4 10.1 103 49-170 434-562 (647)
305 cd00561 CobA_CobO_BtuR ATP:cor 98.0 6.4E-05 1.4E-09 59.2 9.0 108 49-162 5-146 (159)
306 cd01120 RecA-like_NTPases RecA 98.0 5.5E-05 1.2E-09 60.1 8.8 24 49-72 2-25 (165)
307 PF10236 DAP3: Mitochondrial r 97.9 0.0014 3E-08 58.0 17.3 48 164-211 258-308 (309)
308 PF04665 Pox_A32: Poxvirus A32 97.9 0.00093 2E-08 56.3 15.2 131 48-181 15-168 (241)
309 PF00448 SRP54: SRP54-type pro 97.9 0.00011 2.3E-09 60.5 9.4 103 47-150 1-125 (196)
310 PF09848 DUF2075: Uncharacteri 97.9 5.4E-05 1.2E-09 68.4 8.1 94 49-147 4-125 (352)
311 KOG2228 Origin recognition com 97.9 0.00024 5.2E-09 61.7 11.2 155 27-183 26-219 (408)
312 COG4088 Predicted nucleotide k 97.8 0.00013 2.8E-09 58.9 8.9 30 47-76 2-31 (261)
313 TIGR01618 phage_P_loop phage n 97.8 5.1E-05 1.1E-09 63.2 6.6 71 47-124 12-94 (220)
314 KOG1808 AAA ATPase containing 97.8 0.00014 3.1E-09 76.1 10.8 142 33-183 428-599 (1856)
315 PF04851 ResIII: Type III rest 97.8 0.00015 3.2E-09 58.8 9.0 44 29-72 7-51 (184)
316 PRK13695 putative NTPase; Prov 97.8 0.00046 1E-08 55.7 11.5 71 110-183 95-172 (174)
317 PRK15455 PrkA family serine pr 97.8 4.1E-05 8.8E-10 71.6 5.6 52 20-71 71-128 (644)
318 PRK12723 flagellar biosynthesi 97.7 0.00012 2.7E-09 66.2 8.4 101 49-150 177-297 (388)
319 PF02562 PhoH: PhoH-like prote 97.7 0.00015 3.2E-09 59.6 7.6 100 48-150 21-155 (205)
320 TIGR00708 cobA cob(I)alamin ad 97.7 0.00054 1.2E-08 54.6 10.4 107 48-163 7-149 (173)
321 PRK14532 adenylate kinase; Pro 97.7 0.0013 2.7E-08 53.9 13.1 23 48-70 2-24 (188)
322 cd00046 DEXDc DEAD-like helica 97.7 0.00013 2.9E-09 55.9 6.9 25 48-72 2-26 (144)
323 PRK14974 cell division protein 97.7 0.00035 7.6E-09 62.1 10.2 84 49-137 143-250 (336)
324 KOG0479 DNA replication licens 97.7 0.00026 5.7E-09 65.5 9.3 134 26-165 302-478 (818)
325 PF13671 AAA_33: AAA domain; P 97.7 4.4E-05 9.5E-10 59.4 3.7 22 49-70 2-23 (143)
326 COG2884 FtsE Predicted ATPase 97.6 0.00036 7.8E-09 55.8 8.3 61 110-170 154-215 (223)
327 TIGR01448 recD_rel helicase, p 97.6 0.00064 1.4E-08 67.0 12.0 114 30-150 325-452 (720)
328 TIGR01359 UMP_CMP_kin_fam UMP- 97.6 0.0014 3E-08 53.3 12.0 22 49-70 2-23 (183)
329 PF05272 VirE: Virulence-assoc 97.6 0.00059 1.3E-08 56.1 9.6 99 49-169 55-169 (198)
330 PF13207 AAA_17: AAA domain; P 97.6 6.5E-05 1.4E-09 56.7 3.7 29 49-82 2-30 (121)
331 COG1119 ModF ABC-type molybden 97.6 0.001 2.2E-08 55.4 10.8 53 110-162 188-244 (257)
332 COG2842 Uncharacterized ATPase 97.6 0.001 2.2E-08 57.0 11.1 178 23-216 70-275 (297)
333 PRK06762 hypothetical protein; 97.6 0.0022 4.8E-08 51.2 12.6 22 49-70 5-26 (166)
334 PRK00771 signal recognition pa 97.6 0.00095 2.1E-08 61.6 11.6 29 47-75 95-124 (437)
335 COG1419 FlhF Flagellar GTP-bin 97.6 0.00093 2E-08 60.0 11.0 113 49-163 206-336 (407)
336 TIGR01447 recD exodeoxyribonuc 97.6 0.00063 1.4E-08 65.3 10.6 37 111-150 259-295 (586)
337 PF05970 PIF1: PIF1-like helic 97.6 0.00052 1.1E-08 62.3 9.6 43 30-72 6-48 (364)
338 KOG4658 Apoptotic ATPase [Sign 97.6 0.0025 5.3E-08 64.1 15.0 182 28-216 161-366 (889)
339 PRK05986 cob(I)alamin adenolsy 97.6 0.00078 1.7E-08 54.5 9.4 101 48-151 24-158 (191)
340 TIGR02237 recomb_radB DNA repa 97.5 0.00068 1.5E-08 56.5 9.4 46 49-97 15-60 (209)
341 PF10923 DUF2791: P-loop Domai 97.5 0.0057 1.2E-07 55.8 15.7 92 111-202 239-371 (416)
342 TIGR03574 selen_PSTK L-seryl-t 97.5 0.00057 1.2E-08 58.6 8.9 24 49-72 2-25 (249)
343 smart00487 DEXDc DEAD-like hel 97.5 0.00071 1.5E-08 55.2 9.2 41 111-151 129-170 (201)
344 TIGR02858 spore_III_AA stage I 97.5 0.0012 2.6E-08 57.0 10.7 35 37-71 102-136 (270)
345 cd01124 KaiC KaiC is a circadi 97.5 0.00052 1.1E-08 56.0 8.0 25 49-73 2-26 (187)
346 TIGR02768 TraA_Ti Ti-type conj 97.5 0.00091 2E-08 66.2 11.0 112 30-149 354-475 (744)
347 PRK08533 flagellar accessory p 97.4 0.00078 1.7E-08 57.0 8.6 25 49-73 27-51 (230)
348 PRK06067 flagellar accessory p 97.4 0.0013 2.8E-08 55.9 10.0 35 36-70 13-49 (234)
349 KOG3347 Predicted nucleotide k 97.4 0.00016 3.4E-09 55.3 3.6 33 45-82 6-38 (176)
350 PRK10875 recD exonuclease V su 97.4 0.0011 2.3E-08 63.9 10.1 99 49-150 170-301 (615)
351 PF00519 PPV_E1_C: Papillomavi 97.4 0.0019 4.1E-08 57.5 10.7 112 34-169 249-382 (432)
352 PRK05703 flhF flagellar biosyn 97.4 0.0014 3E-08 60.6 10.4 96 49-151 224-343 (424)
353 PRK08118 topology modulation p 97.4 0.0002 4.4E-09 57.4 4.3 24 48-71 3-26 (167)
354 PF08433 KTI12: Chromatin asso 97.4 0.0031 6.7E-08 54.5 11.6 95 47-148 2-106 (270)
355 KOG1051 Chaperone HSP104 and r 97.4 0.0015 3.3E-08 64.5 10.8 157 24-184 185-364 (898)
356 cd01394 radB RadB. The archaea 97.4 0.0029 6.3E-08 53.1 11.3 48 36-85 7-56 (218)
357 COG1485 Predicted ATPase [Gene 97.4 0.0022 4.8E-08 56.3 10.6 114 49-170 68-204 (367)
358 TIGR03878 thermo_KaiC_2 KaiC d 97.4 0.0011 2.4E-08 57.1 8.9 25 49-73 39-63 (259)
359 PRK14528 adenylate kinase; Pro 97.4 0.0061 1.3E-07 49.8 12.7 24 47-70 2-25 (186)
360 PRK11889 flhF flagellar biosyn 97.3 0.0021 4.6E-08 57.9 10.3 26 49-74 244-269 (436)
361 PRK09361 radB DNA repair and r 97.3 0.0023 5E-08 53.9 10.3 48 36-85 11-60 (225)
362 cd02021 GntK Gluconate kinase 97.3 0.00065 1.4E-08 53.3 6.5 22 49-70 2-23 (150)
363 cd03216 ABC_Carb_Monos_I This 97.3 0.0011 2.3E-08 53.0 7.8 98 48-151 28-142 (163)
364 PF14840 DNA_pol3_delt_C: Proc 97.3 0.0044 9.5E-08 46.9 10.6 82 241-322 2-119 (125)
365 PRK13889 conjugal transfer rel 97.3 0.0022 4.8E-08 64.8 11.5 112 30-149 348-469 (988)
366 PHA02530 pseT polynucleotide k 97.3 0.0026 5.6E-08 56.2 10.8 22 49-70 5-26 (300)
367 COG0563 Adk Adenylate kinase a 97.3 0.0038 8.2E-08 50.5 10.7 22 49-70 3-24 (178)
368 PRK05800 cobU adenosylcobinami 97.3 0.0022 4.8E-08 51.4 9.3 23 48-70 3-25 (170)
369 cd00267 ABC_ATPase ABC (ATP-bi 97.3 0.0027 5.9E-08 50.2 9.7 95 48-151 27-140 (157)
370 cd01121 Sms Sms (bacterial rad 97.3 0.0022 4.8E-08 58.1 10.2 48 35-84 69-118 (372)
371 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.3 0.0013 2.9E-08 51.2 7.6 93 48-151 28-127 (144)
372 cd01428 ADK Adenylate kinase ( 97.3 0.0025 5.4E-08 52.3 9.6 22 49-70 2-23 (194)
373 PF13479 AAA_24: AAA domain 97.3 0.00044 9.4E-09 57.8 5.1 62 49-123 6-80 (213)
374 PRK14722 flhF flagellar biosyn 97.3 0.0017 3.7E-08 58.5 8.9 22 49-70 140-161 (374)
375 COG4178 ABC-type uncharacteriz 97.2 0.0023 5.1E-08 60.6 10.0 41 110-150 532-573 (604)
376 cd02020 CMPK Cytidine monophos 97.2 0.015 3.1E-07 45.2 13.2 30 49-83 2-31 (147)
377 cd01128 rho_factor Transcripti 97.2 0.0011 2.5E-08 56.5 7.2 26 48-73 18-43 (249)
378 cd00464 SK Shikimate kinase (S 97.2 0.0021 4.5E-08 50.6 8.4 29 49-82 2-30 (154)
379 TIGR01613 primase_Cterm phage/ 97.2 0.0054 1.2E-07 54.3 11.7 132 24-168 47-202 (304)
380 PRK14531 adenylate kinase; Pro 97.2 0.0035 7.6E-08 51.0 9.8 23 48-70 4-26 (183)
381 PRK00279 adk adenylate kinase; 97.2 0.004 8.7E-08 52.1 10.3 22 49-70 3-24 (215)
382 PRK10416 signal recognition pa 97.2 0.0035 7.6E-08 55.6 10.3 25 49-73 117-141 (318)
383 PRK11823 DNA repair protein Ra 97.2 0.0032 6.8E-08 58.7 10.4 48 35-84 67-116 (446)
384 PF08303 tRNA_lig_kinase: tRNA 97.2 0.014 3E-07 45.8 12.1 72 52-137 5-79 (168)
385 cd03228 ABCC_MRP_Like The MRP 97.2 0.0048 1E-07 49.6 10.0 44 110-153 113-157 (171)
386 cd01393 recA_like RecA is a b 97.2 0.0062 1.3E-07 51.3 11.1 63 36-98 7-75 (226)
387 PRK12724 flagellar biosynthesi 97.2 0.0014 3E-08 59.7 7.4 100 49-151 226-345 (432)
388 cd03222 ABC_RNaseL_inhibitor T 97.2 0.0036 7.9E-08 50.5 9.2 97 49-151 28-132 (177)
389 cd01123 Rad51_DMC1_radA Rad51_ 97.2 0.0033 7.2E-08 53.3 9.4 62 37-98 8-75 (235)
390 TIGR00174 miaA tRNA isopenteny 97.2 0.0031 6.6E-08 54.8 9.2 23 49-71 2-24 (287)
391 cd03115 SRP The signal recogni 97.1 0.0038 8.3E-08 50.3 9.3 25 49-73 3-27 (173)
392 TIGR01360 aden_kin_iso1 adenyl 97.1 0.011 2.4E-07 48.1 12.2 25 46-70 3-27 (188)
393 PF00437 T2SE: Type II/IV secr 97.1 0.0027 5.8E-08 55.2 9.0 105 21-137 100-220 (270)
394 PF00406 ADK: Adenylate kinase 97.1 0.0035 7.5E-08 49.3 8.8 20 51-70 1-20 (151)
395 PRK13947 shikimate kinase; Pro 97.1 0.00059 1.3E-08 54.9 4.5 32 47-83 2-33 (171)
396 TIGR03877 thermo_KaiC_1 KaiC d 97.1 0.0031 6.8E-08 53.6 8.9 48 36-85 9-58 (237)
397 CHL00195 ycf46 Ycf46; Provisio 97.1 0.022 4.8E-07 53.6 15.1 117 111-229 81-202 (489)
398 TIGR02012 tigrfam_recA protein 97.1 0.0035 7.5E-08 55.4 9.3 38 36-73 42-82 (321)
399 PRK00091 miaA tRNA delta(2)-is 97.1 0.0033 7.2E-08 55.3 9.1 23 49-71 7-29 (307)
400 PRK00131 aroK shikimate kinase 97.1 0.0007 1.5E-08 54.5 4.6 29 48-81 6-34 (175)
401 cd03246 ABCC_Protease_Secretio 97.1 0.0096 2.1E-07 48.0 11.2 43 110-152 113-157 (173)
402 PRK02496 adk adenylate kinase; 97.1 0.0045 9.7E-08 50.4 9.3 23 48-70 3-25 (184)
403 PRK05973 replicative DNA helic 97.1 0.0038 8.3E-08 52.7 9.0 34 49-84 67-100 (237)
404 PRK13808 adenylate kinase; Pro 97.1 0.0077 1.7E-07 53.4 11.2 23 48-70 2-24 (333)
405 TIGR01351 adk adenylate kinase 97.1 0.0088 1.9E-07 49.8 11.1 22 49-70 2-23 (210)
406 COG2874 FlaH Predicted ATPases 97.1 0.0094 2E-07 48.8 10.5 110 49-161 31-177 (235)
407 PRK13826 Dtr system oriT relax 97.1 0.0048 1E-07 62.9 10.9 95 49-149 400-504 (1102)
408 PRK13894 conjugal transfer ATP 97.1 0.012 2.7E-07 52.2 12.3 48 21-70 121-172 (319)
409 PRK12727 flagellar biosynthesi 97.1 0.012 2.5E-07 55.3 12.5 23 49-71 353-375 (559)
410 PRK03839 putative kinase; Prov 97.1 0.00065 1.4E-08 55.2 4.0 29 49-82 3-31 (180)
411 PRK04328 hypothetical protein; 97.1 0.0036 7.8E-08 53.7 8.7 48 36-85 11-60 (249)
412 TIGR02238 recomb_DMC1 meiotic 97.1 0.0058 1.3E-07 54.1 10.2 51 36-86 84-140 (313)
413 PRK12726 flagellar biosynthesi 97.0 0.0048 1E-07 55.5 9.5 26 49-74 209-234 (407)
414 cd03247 ABCC_cytochrome_bd The 97.0 0.011 2.3E-07 47.9 11.0 44 110-153 115-159 (178)
415 cd03214 ABC_Iron-Siderophores_ 97.0 0.0059 1.3E-07 49.6 9.5 102 48-152 27-159 (180)
416 PRK00625 shikimate kinase; Pro 97.0 0.00077 1.7E-08 54.2 4.2 31 48-83 2-32 (173)
417 PRK14527 adenylate kinase; Pro 97.0 0.0087 1.9E-07 49.1 10.5 23 49-71 9-31 (191)
418 PRK09354 recA recombinase A; P 97.0 0.008 1.7E-07 53.6 10.8 37 36-72 47-86 (349)
419 PF01443 Viral_helicase1: Vira 97.0 0.0013 2.9E-08 55.6 5.7 21 49-69 1-21 (234)
420 PLN02674 adenylate kinase 97.0 0.022 4.7E-07 48.4 12.8 24 47-70 32-55 (244)
421 COG3854 SpoIIIAA ncharacterize 97.0 0.018 4E-07 47.7 11.7 28 44-71 135-162 (308)
422 PRK07261 topology modulation p 97.0 0.00082 1.8E-08 54.1 4.1 22 49-70 3-24 (171)
423 cd00544 CobU Adenosylcobinamid 97.0 0.014 3E-07 46.8 11.0 32 49-85 2-33 (169)
424 TIGR01313 therm_gnt_kin carboh 97.0 0.0023 4.9E-08 51.0 6.6 22 49-70 1-22 (163)
425 PRK14737 gmk guanylate kinase; 97.0 0.014 3E-07 47.6 11.2 22 49-70 7-28 (186)
426 cd03223 ABCD_peroxisomal_ALDP 97.0 0.011 2.5E-07 47.2 10.6 99 49-152 30-149 (166)
427 PRK06547 hypothetical protein; 97.0 0.0017 3.7E-08 52.2 5.8 30 41-70 10-39 (172)
428 cd01131 PilT Pilus retraction 97.0 0.011 2.4E-07 48.7 10.7 23 49-71 4-26 (198)
429 TIGR00064 ftsY signal recognit 97.0 0.0039 8.5E-08 54.1 8.3 26 49-74 75-100 (272)
430 PF13245 AAA_19: Part of AAA d 97.0 0.0014 3E-08 44.9 4.3 23 49-71 13-35 (76)
431 COG0529 CysC Adenylylsulfate k 97.0 0.0058 1.3E-07 48.4 8.1 46 30-75 6-52 (197)
432 PRK09376 rho transcription ter 97.0 0.0026 5.6E-08 57.2 7.0 26 48-73 171-196 (416)
433 TIGR01425 SRP54_euk signal rec 96.9 0.0059 1.3E-07 56.1 9.5 28 47-74 100-128 (429)
434 PF05707 Zot: Zonular occluden 96.9 0.00047 1E-08 56.7 2.2 54 111-164 79-139 (193)
435 cd00983 recA RecA is a bacter 96.9 0.011 2.4E-07 52.3 10.9 37 36-72 42-81 (325)
436 TIGR02782 TrbB_P P-type conjug 96.9 0.0023 5E-08 56.3 6.7 49 21-71 105-157 (299)
437 COG2274 SunT ABC-type bacterio 96.9 0.0038 8.2E-08 61.2 8.7 42 110-151 626-668 (709)
438 cd03227 ABC_Class2 ABC-type Cl 96.9 0.02 4.3E-07 45.6 11.5 100 48-151 23-141 (162)
439 PRK10867 signal recognition pa 96.9 0.0082 1.8E-07 55.4 10.3 27 47-73 100-127 (433)
440 TIGR00767 rho transcription te 96.9 0.0027 5.8E-08 57.4 6.9 26 48-73 170-195 (415)
441 PRK13948 shikimate kinase; Pro 96.9 0.0064 1.4E-07 49.3 8.5 31 48-83 12-42 (182)
442 PRK10078 ribose 1,5-bisphospho 96.9 0.0025 5.4E-08 52.0 6.3 23 48-70 4-26 (186)
443 cd02027 APSK Adenosine 5'-phos 96.9 0.014 3.1E-07 45.7 10.3 23 49-71 2-24 (149)
444 PRK13949 shikimate kinase; Pro 96.9 0.0012 2.6E-08 53.0 4.2 31 48-83 3-33 (169)
445 cd03281 ABC_MSH5_euk MutS5 hom 96.9 0.012 2.7E-07 49.1 10.3 20 49-68 32-51 (213)
446 COG1100 GTPase SAR1 and relate 96.9 0.018 3.9E-07 48.1 11.4 99 49-153 8-123 (219)
447 PRK14530 adenylate kinase; Pro 96.9 0.0013 2.8E-08 55.1 4.3 24 47-70 4-27 (215)
448 COG2804 PulE Type II secretory 96.9 0.0088 1.9E-07 55.2 9.9 121 21-158 234-368 (500)
449 PF13238 AAA_18: AAA domain; P 96.9 0.00085 1.8E-08 50.9 3.0 22 49-70 1-22 (129)
450 TIGR00150 HI0065_YjeE ATPase, 96.9 0.0027 5.8E-08 48.5 5.5 24 49-72 25-48 (133)
451 PRK12337 2-phosphoglycerate ki 96.8 0.023 5E-07 52.4 12.4 24 47-70 255-279 (475)
452 TIGR02655 circ_KaiC circadian 96.8 0.011 2.4E-07 55.8 10.8 49 35-85 250-300 (484)
453 PRK14529 adenylate kinase; Pro 96.8 0.012 2.7E-07 49.2 9.8 24 48-71 2-25 (223)
454 TIGR02788 VirB11 P-type DNA tr 96.8 0.021 4.5E-07 50.6 11.8 34 36-71 136-169 (308)
455 KOG0086 GTPase Rab4, small G p 96.8 0.031 6.8E-07 42.9 10.8 93 49-150 12-123 (214)
456 TIGR03880 KaiC_arch_3 KaiC dom 96.8 0.0083 1.8E-07 50.5 8.9 46 37-84 5-52 (224)
457 cd04124 RabL2 RabL2 subfamily. 96.8 0.014 3.1E-07 46.2 9.8 22 49-70 3-24 (161)
458 PF00270 DEAD: DEAD/DEAH box h 96.8 0.013 2.9E-07 46.6 9.7 21 48-68 16-36 (169)
459 KOG3928 Mitochondrial ribosome 96.8 0.11 2.3E-06 46.9 15.7 101 112-212 316-456 (461)
460 cd01878 HflX HflX subfamily. 96.8 0.067 1.5E-06 44.2 14.2 24 46-69 41-64 (204)
461 PRK14729 miaA tRNA delta(2)-is 96.8 0.006 1.3E-07 53.4 8.0 22 48-69 6-27 (300)
462 PF13086 AAA_11: AAA domain; P 96.8 0.0014 3E-08 55.3 4.1 37 32-70 5-41 (236)
463 PRK06217 hypothetical protein; 96.8 0.0015 3.2E-08 53.2 4.1 23 48-70 3-25 (183)
464 cd02019 NK Nucleoside/nucleoti 96.8 0.0015 3.3E-08 43.8 3.4 22 49-70 2-23 (69)
465 PRK06696 uridine kinase; Valid 96.8 0.0048 1E-07 51.9 7.2 43 30-72 3-48 (223)
466 COG0703 AroK Shikimate kinase 96.8 0.0013 2.9E-08 52.2 3.4 32 47-83 3-34 (172)
467 TIGR01663 PNK-3'Pase polynucle 96.8 0.0044 9.6E-08 58.5 7.4 84 49-148 372-455 (526)
468 COG1875 NYN ribonuclease and A 96.8 0.017 3.8E-07 51.0 10.4 37 111-150 351-387 (436)
469 TIGR02868 CydC thiol reductant 96.8 0.0069 1.5E-07 58.0 8.9 40 110-149 487-527 (529)
470 cd03213 ABCG_EPDR ABCG transpo 96.8 0.0093 2E-07 49.0 8.6 43 110-152 128-172 (194)
471 cd03230 ABC_DR_subfamily_A Thi 96.8 0.013 2.8E-07 47.2 9.2 43 110-152 112-156 (173)
472 PRK13539 cytochrome c biogenes 96.7 0.014 3.1E-07 48.4 9.7 47 110-156 144-192 (207)
473 COG1936 Predicted nucleotide k 96.7 0.0016 3.4E-08 51.3 3.5 30 48-83 2-31 (180)
474 PF01745 IPT: Isopentenyl tran 96.7 0.0044 9.5E-08 50.7 6.1 141 49-201 4-159 (233)
475 PF01926 MMR_HSR1: 50S ribosom 96.7 0.014 3E-07 43.4 8.6 21 49-69 2-22 (116)
476 PLN02459 probable adenylate ki 96.7 0.029 6.3E-07 48.0 11.4 23 48-70 31-53 (261)
477 cd04162 Arl9_Arfrp2_like Arl9/ 96.7 0.013 2.8E-07 46.7 8.8 97 49-152 2-110 (164)
478 cd04106 Rab23_lke Rab23-like s 96.7 0.035 7.5E-07 43.8 11.3 22 49-70 3-24 (162)
479 PRK06731 flhF flagellar biosyn 96.7 0.017 3.7E-07 49.9 9.9 26 47-72 76-101 (270)
480 PF09439 SRPRB: Signal recogni 96.7 0.013 2.8E-07 47.3 8.6 97 47-153 4-124 (181)
481 cd03238 ABC_UvrA The excision 96.7 0.033 7E-07 45.0 11.0 41 112-152 108-150 (176)
482 COG1066 Sms Predicted ATP-depe 96.7 0.041 8.8E-07 49.6 12.3 49 34-85 79-129 (456)
483 KOG2383 Predicted ATPase [Gene 96.7 0.015 3.3E-07 51.9 9.6 112 49-169 117-266 (467)
484 PRK10751 molybdopterin-guanine 96.7 0.011 2.4E-07 47.3 7.9 36 47-82 7-42 (173)
485 PF08298 AAA_PrkA: PrkA AAA do 96.7 0.0048 1E-07 54.6 6.4 49 23-71 58-113 (358)
486 cd03229 ABC_Class3 This class 96.7 0.011 2.3E-07 47.9 8.1 42 110-151 117-161 (178)
487 PRK13833 conjugal transfer pro 96.6 0.006 1.3E-07 54.0 6.9 39 31-71 131-169 (323)
488 cd00227 CPT Chloramphenicol (C 96.6 0.002 4.3E-08 52.1 3.6 23 49-71 5-27 (175)
489 TIGR03499 FlhF flagellar biosy 96.6 0.0056 1.2E-07 53.5 6.6 24 49-72 197-220 (282)
490 PRK04301 radA DNA repair and r 96.6 0.035 7.7E-07 49.4 11.8 64 36-99 90-159 (317)
491 cd03283 ABC_MutS-like MutS-lik 96.6 0.02 4.3E-07 47.3 9.5 22 49-70 28-49 (199)
492 COG1102 Cmk Cytidylate kinase 96.6 0.0023 4.9E-08 49.8 3.6 27 49-80 3-29 (179)
493 PRK12608 transcription termina 96.6 0.0061 1.3E-07 54.7 6.8 30 44-73 131-160 (380)
494 PTZ00088 adenylate kinase 1; P 96.6 0.0025 5.4E-08 53.7 4.2 22 49-70 9-30 (229)
495 cd03264 ABC_drug_resistance_li 96.6 0.014 2.9E-07 48.7 8.5 43 110-152 147-190 (211)
496 PLN02840 tRNA dimethylallyltra 96.6 0.031 6.7E-07 51.1 11.2 23 49-71 24-46 (421)
497 TIGR00959 ffh signal recogniti 96.6 0.028 6E-07 51.9 10.9 25 47-71 99-124 (428)
498 PRK07667 uridine kinase; Provi 96.5 0.0057 1.2E-07 50.3 5.8 25 49-73 20-44 (193)
499 TIGR00643 recG ATP-dependent D 96.5 0.018 3.9E-07 56.3 10.1 37 29-65 239-275 (630)
500 TIGR00416 sms DNA repair prote 96.5 0.018 4E-07 53.7 9.7 48 35-84 81-130 (454)
No 1
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=100.00 E-value=5.3e-59 Score=371.51 Aligned_cols=327 Identities=71% Similarity=1.097 Sum_probs=316.1
Q ss_pred CC--CCCCCCCCCCCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCc
Q 020071 1 MA--SSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREA 78 (331)
Q Consensus 1 ~~--~~~~~~~~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~ 78 (331)
|| ++.+.+..+++||.+||||..+.|++|+++.+.+|.-..+.|+.||++|.||||+||||.+.++++.+.+..+...
T Consensus 1 ~~~~~~~~~~~~~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~ 80 (333)
T KOG0991|consen 1 MPEFSEMSKSDKYQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEA 80 (333)
T ss_pred CCccccCCccccccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhH
Confidence 56 3347778899999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred eEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhh
Q 020071 79 VMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPI 158 (331)
Q Consensus 79 ~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l 158 (331)
+.++|+++.+|++.++..++.+++...++|.++.++||+||+|.|+..+|++|.++||-++..++|.++||...++..++
T Consensus 81 vLELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiEPI 160 (333)
T KOG0991|consen 81 VLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIEPI 160 (333)
T ss_pred hhhccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCCccchhhhhhhcCCCCHH
Q 020071 159 QSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPL 238 (331)
Q Consensus 159 ~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~ 238 (331)
.|||.+++|..+++.++...+..+++.+++.++++.++.++..+.||.|+++|.||....+.+.++.+.|.++++.+++.
T Consensus 161 QSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~ 240 (333)
T KOG0991|consen 161 QSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPL 240 (333)
T ss_pred HhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhccccccchhhhhhccCCCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Q 020071 239 HVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLL 318 (331)
Q Consensus 239 ~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~ 318 (331)
.+.+++.++.++++++|++.+.++|+.|++|.+|+..++|.++++.+++...+++++.++-+..+|..|++..|+|.+|+
T Consensus 241 ~v~~ml~~~~~~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K~~~~~E~~rlE~ikeig~thmrI~eGv~s~LQl~gll 320 (333)
T KOG0991|consen 241 LVKKMLQACLKRNIDEALKILAELWKLGYSPEDIITTLFRVVKNMDVAESLRLEFIKEIGLTHMRILEGVNSLLQLSGLL 320 (333)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHhHHHhhHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888888899999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 020071 319 AKLSIVRET 327 (331)
Q Consensus 319 ~~l~~~~~~ 327 (331)
.++|.+-..
T Consensus 321 a~l~~~~~k 329 (333)
T KOG0991|consen 321 AKLCKVGEK 329 (333)
T ss_pred HHHHHhccc
Confidence 999987543
No 2
>PLN03025 replication factor C subunit; Provisional
Probab=100.00 E-value=4.2e-54 Score=381.39 Aligned_cols=318 Identities=87% Similarity=1.330 Sum_probs=298.7
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHh
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDV 92 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 92 (331)
.||.+||||++|++++||++++..|+.++.+++.||++||||+|+|||++|+++++.+.|.++...++++++++..+.+.
T Consensus 1 ~~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~ 80 (319)
T PLN03025 1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDV 80 (319)
T ss_pred CChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHH
Confidence 48999999999999999999999999999999999999999999999999999999999887777889999998888899
Q ss_pred HHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccceeeecCCCH
Q 020071 93 VRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSD 172 (331)
Q Consensus 93 i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~~i~~~~~~~ 172 (331)
+++.++.+.........++++++||||+|.++..++++|++++|.++.+++||++||..+++.++++|||..++|++++.
T Consensus 81 vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~ 160 (319)
T PLN03025 81 VRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSD 160 (319)
T ss_pred HHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCH
Confidence 99988887766543334668999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCCccchhhhhhhcCCCCHHHHHHHHHHHHcCCH
Q 020071 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKF 252 (331)
Q Consensus 173 ~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~ 252 (331)
+++..+++.+++++|+.+++++++++++.++||+|.+++.++..+.+.+.|+.+++.++.+...++.++++++++..++.
T Consensus 161 ~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~~~~~ 240 (319)
T PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCLKGKF 240 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999977666678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhcc
Q 020071 253 DDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRETAKA 330 (331)
Q Consensus 253 ~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~~~~~~~ 330 (331)
++++.++.+|+..|+++.+|+..+.+.+....+++..+..++..++++++++..|.++.++|+.|+.+++...++.|+
T Consensus 241 ~~a~~~l~~ll~~g~~~~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~a~~~~~~~~~~~~~~ 318 (319)
T PLN03025 241 DDACDGLKQLYDLGYSPTDIITTLFRVVKNYDMPEFLKLEYLREIGFAHMRICDGVGSLLQLSGLLAKLCLVRETAKA 318 (319)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999887667888889999999999999999999999999999999999998876
No 3
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=100.00 E-value=8.7e-52 Score=343.40 Aligned_cols=315 Identities=35% Similarity=0.506 Sum_probs=288.3
Q ss_pred CCCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCC-CCCceEEeecCCCCC
Q 020071 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN-YREAVMELNASDDRG 89 (331)
Q Consensus 11 ~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~ 89 (331)
....|++||||++|++++||+.++..|.+.+.++..||+|||||||||||+.|++++++++|+. ....+.+.|.++.+|
T Consensus 22 ~~~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderG 101 (346)
T KOG0989|consen 22 KHRSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERG 101 (346)
T ss_pred CccchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccc
Confidence 3344999999999999999999999999999999999999999999999999999999999943 344577889999999
Q ss_pred hHhHHHHHHHHHhcccCC------CCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccc
Q 020071 90 IDVVRNKIKMFAQKKVTL------PPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCA 163 (331)
Q Consensus 90 ~~~i~~~i~~~~~~~~~~------~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~ 163 (331)
+..+++.++.+....... +...++|+|+||+|.|+.++|++|+++||.++.+++||++||+.++++.++.|||+
T Consensus 102 isvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~ 181 (346)
T KOG0989|consen 102 ISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQ 181 (346)
T ss_pred ccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHH
Confidence 998898888877754432 23456999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCCccc-hhhhhhhcCCCCHHHHHH
Q 020071 164 IVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVN-QENVFKVCDQPHPLHVKN 242 (331)
Q Consensus 164 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~-~~~v~~~~~~~~~~~i~~ 242 (331)
.+.|+++.++.+...|+.++.++|+.+++++++.|++.++||+|+|+..||.++..+..|| .-.+.++.+..+++.+.+
T Consensus 182 KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~gk~It~~~~~e~~~GvVp~~~l~~ 261 (346)
T KOG0989|consen 182 KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSLLGKRITTSLVNEELAGVVPDEKLLD 261 (346)
T ss_pred HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhccCcccchHHHHHHHhccCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998888888 555556667999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-ccChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 020071 243 MVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKL 321 (331)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l 321 (331)
+++.+..+|+.+..+..+++.+.|+++..++..+...+... |+....+.++-..+.+.+.++..+.+..++|-.|....
T Consensus 262 lle~a~S~d~~~~v~~~Rei~~sg~~~~~lmsQLa~vi~~~~g~~d~~k~~~~~kl~~~~~~~~dg~~l~~~L~~L~~~~ 341 (346)
T KOG0989|consen 262 LLELALSADTPNTVKRVREIMRSGYSPLQLMSQLAEVIMDIIGLSDEQKAQISLKLFTRDKRLEDGEDLELALKDLLEAE 341 (346)
T ss_pred HHHHHHccChHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhccchhhcchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988775 78888899999999999999999999999999999988
Q ss_pred HHHH
Q 020071 322 SIVR 325 (331)
Q Consensus 322 ~~~~ 325 (331)
.+++
T Consensus 342 ~ql~ 345 (346)
T KOG0989|consen 342 KQLR 345 (346)
T ss_pred HHHh
Confidence 8765
No 4
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=5.7e-48 Score=353.75 Aligned_cols=313 Identities=22% Similarity=0.266 Sum_probs=282.2
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC----------------
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY---------------- 75 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~---------------- 75 (331)
.+|+++|||++|+|++||+.++..|.++++.++++| +|||||+|+|||++|+.+++.+.|+..
T Consensus 5 ~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i 84 (451)
T PRK06305 5 QVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEI 84 (451)
T ss_pred HHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHH
Confidence 479999999999999999999999999999999999 799999999999999999999988521
Q ss_pred ----CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC
Q 020071 76 ----REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVS 151 (331)
Q Consensus 76 ----~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~ 151 (331)
..+++++++....+++.+++..+.....+. .++++||||||+|.++.++++.|++++|+|+++++||+++++.
T Consensus 85 ~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~---~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~ 161 (451)
T PRK06305 85 SSGTSLDVLEIDGASHRGIEDIRQINETVLFTPS---KSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEI 161 (451)
T ss_pred hcCCCCceEEeeccccCCHHHHHHHHHHHHhhhh---cCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCCh
Confidence 235677777666678888887766555543 6789999999999999999999999999999999999999999
Q ss_pred CCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhh-CCCccchhhhhh
Q 020071 152 SKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS-GFRFVNQENVFK 230 (331)
Q Consensus 152 ~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~-~~~~i~~~~v~~ 230 (331)
.++.++++|||..++|.+++.+++..|+.++++++|+.+++++++.|+.+++||+|.+++.++++.. ..+.|+.++|.+
T Consensus 162 ~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~~~It~~~V~~ 241 (451)
T PRK06305 162 HKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVAK 241 (451)
T ss_pred HhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998752 235699999999
Q ss_pred hcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--------------ccChHhHHHHHHH
Q 020071 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY--------------EMAEHLKLEFMKE 296 (331)
Q Consensus 231 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~--------------~~~~~~~~~~~~~ 296 (331)
+++...++.++++++++..++..+++.++.+|...|+++..++..+.++.+.+ .++...+.+++..
T Consensus 242 l~~~~~~~~vf~L~~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~fR~ll~vk~~~~~~~~a~~~s~~~L~~ii~~ 321 (451)
T PRK06305 242 ALGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQYNKQLSSVATKYSSEQLLEIIDF 321 (451)
T ss_pred HHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988877665543 1566778899999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHhhh
Q 020071 297 AGFAHMRICDGVGSYLQLCGLLAKLSIVRETA 328 (331)
Q Consensus 297 l~~~~~~l~~~~~~~l~l~~l~~~l~~~~~~~ 328 (331)
+.+++++|++|.++++.||.++++++.++.+.
T Consensus 322 l~e~d~~lk~~~~~k~~lE~lll~l~~~~~~~ 353 (451)
T PRK06305 322 LGESAKHIQLTIFEKTFLETVIIHLIRIYQRP 353 (451)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999887653
No 5
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.6e-47 Score=353.81 Aligned_cols=307 Identities=19% Similarity=0.253 Sum_probs=277.3
Q ss_pred chhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCC------------------
Q 020071 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPN------------------ 74 (331)
Q Consensus 14 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~------------------ 74 (331)
.|.+||||++|++++||+++++.|.+++.+++++| +||+||+|+|||++|+.+++.++|..
T Consensus 2 al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 81 (584)
T PRK14952 2 ALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAP 81 (584)
T ss_pred cHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhc
Confidence 36799999999999999999999999999999999 69999999999999999999999842
Q ss_pred ---CCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC
Q 020071 75 ---YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVS 151 (331)
Q Consensus 75 ---~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~ 151 (331)
...+++++++....+++++++++......++ .++++|+||||+|.|+.+++|+|+++||+|+.+++||++|++.
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~---~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~ 158 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPA---QSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEP 158 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhhh---cCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 1245778888777789999999888877776 6889999999999999999999999999999999999999999
Q ss_pred CCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhC--CCccchhhhh
Q 020071 152 SKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSG--FRFVNQENVF 229 (331)
Q Consensus 152 ~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~--~~~i~~~~v~ 229 (331)
++++++|+|||+.+.|.+++.+++.+|+.++++++|+.++++++..+++.++|++|.++++|+++... .+.||.+++.
T Consensus 159 ~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~~~~~~~It~~~v~ 238 (584)
T PRK14952 159 EKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYQRAL 238 (584)
T ss_pred HhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987543 5689999999
Q ss_pred hhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-------------------------
Q 020071 230 KVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE------------------------- 284 (331)
Q Consensus 230 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~------------------------- 284 (331)
++++....+.++++++++..+|...++.++.+++..|.++..++..+.++++.+-
T Consensus 239 ~llg~~~~~~i~~lv~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~RdLll~k~~~~~~~~~l~~~~~~~~~~l~ 318 (584)
T PRK14952 239 GLLGATDVALIDDAVDALAADDAAALFGAIESVIDAGHDPRRFATDLLERFRDLIVLQAVPDAAARGVVDAPEDVLERMR 318 (584)
T ss_pred HHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcchhhhcccccCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988877666531
Q ss_pred -----cChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 020071 285 -----MAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSI 323 (331)
Q Consensus 285 -----~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~ 323 (331)
++...+.++++.+......++.+.++++.||.++++++.
T Consensus 319 ~qa~~~s~~~L~~~i~~l~~~~~~~~~~~~~rl~LE~llikl~~ 362 (584)
T PRK14952 319 EQAARIGLATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLLL 362 (584)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHhc
Confidence 112233467777778888888999999999999999985
No 6
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.7e-47 Score=345.98 Aligned_cols=307 Identities=21% Similarity=0.272 Sum_probs=278.1
Q ss_pred chhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCC------------------
Q 020071 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPN------------------ 74 (331)
Q Consensus 14 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~------------------ 74 (331)
.|+.||||++|+|++||+++++.|.+.+..++++| +||+||+|+|||++|+.+++.++|..
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 58999999999999999999999999999999998 89999999999999999999998742
Q ss_pred -CCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCC
Q 020071 75 -YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSK 153 (331)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~ 153 (331)
...+++++++.+..+++++++.++.+...|+ +++++|+||||+|.|+.+++|+|++++|+||+++.||++++...+
T Consensus 82 ~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~---~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~K 158 (491)
T PRK14964 82 SNHPDVIEIDAASNTSVDDIKVILENSCYLPI---SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKK 158 (491)
T ss_pred cCCCCEEEEecccCCCHHHHHHHHHHHHhccc---cCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHH
Confidence 2457889999888899999999999888887 788999999999999999999999999999999999999999999
Q ss_pred CChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-hCCCccchhhhhhhc
Q 020071 154 IIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-SGFRFVNQENVFKVC 232 (331)
Q Consensus 154 l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-~~~~~i~~~~v~~~~ 232 (331)
++++++|||+.+.|.+++.+++..|+.++++++|+.+++++++.|++.++|++|.+++.++++. ...+.||.++|.+++
T Consensus 159 l~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~~~~It~e~V~~ll 238 (491)
T PRK14964 159 IPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDLL 238 (491)
T ss_pred HHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998875 345689999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-------------------------cCh
Q 020071 233 DQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-------------------------MAE 287 (331)
Q Consensus 233 ~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~-------------------------~~~ 287 (331)
+....+.++++++++.++|..+++.++++|+..| ++..++..+..+++.+. ++.
T Consensus 239 g~~~~~~If~L~~aI~~~d~~~Al~~l~~Ll~~g-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (491)
T PRK14964 239 GCVDKHILEDLVEAILLGDAQSALNVFRELCNTS-NPVIILEGMLQIIYEICYFSITKEIDFLLGEDLITRIKSLKIGST 317 (491)
T ss_pred ccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999876 67788877766554320 223
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 020071 288 HLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324 (331)
Q Consensus 288 ~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~ 324 (331)
..+.++++.+.+....++...++++++|..+++++.+
T Consensus 318 ~~l~~~~~~l~~~~~~~~~~~~~~~~~e~~~~rl~~~ 354 (491)
T PRK14964 318 IFLSRLWQMLLKGIQEVKSSTCVKQAAEMMIIRLCYL 354 (491)
T ss_pred HHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc
Confidence 3445778888999999999999999999999999853
No 7
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1e-46 Score=346.59 Aligned_cols=308 Identities=23% Similarity=0.346 Sum_probs=278.9
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCC-----------------
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPN----------------- 74 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~----------------- 74 (331)
.+|.+||||++|++++||+++.+.|...+++|+++| +|||||+|+|||++|+.+++.+.|..
T Consensus 2 ~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred ccHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 469999999999999999999999999999999999 59999999999999999999998753
Q ss_pred --CCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCC
Q 020071 75 --YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSS 152 (331)
Q Consensus 75 --~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~ 152 (331)
.+.+++++++.+..+++.+++.+......++ .++++|+||||+|.|+.+++++|++++|+||++++||++|+++.
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~---~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~ 158 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPS---MARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPL 158 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCcc---cCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChh
Confidence 2345777777766788999999877665654 67899999999999999999999999999999999999999999
Q ss_pred CCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhh-CCCccchhhhhhh
Q 020071 153 KIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS-GFRFVNQENVFKV 231 (331)
Q Consensus 153 ~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~-~~~~i~~~~v~~~ 231 (331)
+++++++|||..++|.|++.+++..|+.++++++|+.+++++++.|++.++||+|.+++.++++.. ..+.||.++|.++
T Consensus 159 kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~~~~It~~~V~~~ 238 (535)
T PRK08451 159 KLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVADM 238 (535)
T ss_pred hCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987653 3568999999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc------cChHhHHHHHHHHHHHHHHHh
Q 020071 232 CDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE------MAEHLKLEFMKEAGFAHMRIC 305 (331)
Q Consensus 232 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~------~~~~~~~~~~~~l~~~~~~l~ 305 (331)
++....+.++++++++..+|...++.++.++ .|.++.+++..+....+..- .....+.+.+..+.+++..+.
T Consensus 239 lg~~~~~~I~~li~ai~~~d~~~a~~~l~~L--~g~~~~~~l~~l~~~l~~~~~~~~~~~~l~~l~r~~riL~~~k~~l~ 316 (535)
T PRK08451 239 LGLLDPSKLEDFFQAILNQDKEKLFELLKEL--EDYEAEMVLDEMMLFLKEKFLSKDSEFSILLYERFFRILSSAKSLLK 316 (535)
T ss_pred hCCCCHHHHHHHHHHHHhcCHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 57999999999888777431 234446788899999999999
Q ss_pred cCCCchHHHHHHHHHHHHHH
Q 020071 306 DGVGSYLQLCGLLAKLSIVR 325 (331)
Q Consensus 306 ~~~~~~l~l~~l~~~l~~~~ 325 (331)
.|.+.+++++.++++++...
T Consensus 317 ~g~~~~i~l~~~~~~~~~~~ 336 (535)
T PRK08451 317 EGADDGFVLLLMLFKMKEAL 336 (535)
T ss_pred hCCCcHHHHHHHHHHHHHhc
Confidence 99999999999999999754
No 8
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1e-46 Score=353.44 Aligned_cols=315 Identities=22% Similarity=0.311 Sum_probs=282.8
Q ss_pred CCCCCCCCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC---------
Q 020071 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY--------- 75 (331)
Q Consensus 6 ~~~~~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~--------- 75 (331)
+...++ .+|++||||++|++++||+.+++.|.+.+..|+++| +||+||+|+|||++|+.+++.++|+..
T Consensus 6 ~~~~~y-~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 6 AAATPY-RVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred CCCccc-hhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 333444 469999999999999999999999999999999999 899999999999999999999998632
Q ss_pred ---------------CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcC
Q 020071 76 ---------------REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSN 140 (331)
Q Consensus 76 ---------------~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~ 140 (331)
+.++++++..+..+++++++++......++ +++++||||||+|.|+..++|+|+++||+|++
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~---~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~ 161 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPV---SARYKVYIIDEVHMLSTAAFNALLKTLEEPPP 161 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchh---cCCcEEEEEEChHhCCHHHHHHHHHHHHhCCC
Confidence 134667777777789999999988888776 78899999999999999999999999999999
Q ss_pred CcEEEEeeCCCCCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-hC
Q 020071 141 STRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-SG 219 (331)
Q Consensus 141 ~~~~I~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-~~ 219 (331)
+++|||+++...+++++++|||+.+.|.+++.+++..|+.++++++|+.+++++++.|++.++|++|.+.++++++. .+
T Consensus 162 ~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~~g 241 (598)
T PRK09111 162 HVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHG 241 (598)
T ss_pred CeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998764 34
Q ss_pred CCccchhhhhhhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------cc-
Q 020071 220 FRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-------------EM- 285 (331)
Q Consensus 220 ~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~-------------~~- 285 (331)
.+.||.++|.++++......++++++++..++..+++..+.+++..|+++..++..+.++++.+ ++
T Consensus 242 ~g~It~e~V~~llg~~~~~~if~L~~ai~~gd~~~Al~~l~~l~~~G~~p~~il~~L~~~~r~L~~vK~~~~~a~~~~~~ 321 (598)
T PRK09111 242 AGEVTAEAVRDMLGLADRARVIDLFEALMRGDVAAALAEFRAQYDAGADPVVVLTDLAEFTHLVTRLKIVPDAAEDPSLS 321 (598)
T ss_pred CCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhcccCC
Confidence 5689999999999999999999999999999999999999999999999999998887655431 12
Q ss_pred --------------ChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 020071 286 --------------AEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324 (331)
Q Consensus 286 --------------~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~ 324 (331)
+...+.++++.+.++++.++.+.|+.+.+|.++++++..
T Consensus 322 p~~~~kl~~~A~~~s~~~L~r~~q~Ll~~~~~vK~~~n~~lalE~lLlrl~~~ 374 (598)
T PRK09111 322 EAERTRGAEFAKKLSMRVLSRLWQMLLKGIEEVQGAPRPLAAAEMVLIRLAYA 374 (598)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhh
Confidence 223346899999999999999999999999999999854
No 9
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.9e-47 Score=356.43 Aligned_cols=309 Identities=20% Similarity=0.272 Sum_probs=280.8
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC----------------
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY---------------- 75 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~---------------- 75 (331)
+.|.+||||++|++++||+++++.|.+++.+++++| +|||||+|+|||++|+.+++.++|+..
T Consensus 4 ~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~ 83 (576)
T PRK14965 4 LVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEIT 83 (576)
T ss_pred HHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHh
Confidence 358899999999999999999999999999999999 699999999999999999999998532
Q ss_pred ---CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCC
Q 020071 76 ---REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSS 152 (331)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~ 152 (331)
..+++++++....+++++++++......++ .++++|+||||+|.|+..++|+|+++||+|+++++||++|++++
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~---~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~ 160 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPS---RSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccc---cCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChh
Confidence 345778887777789999999988887776 68899999999999999999999999999999999999999999
Q ss_pred CCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-hCCCccchhhhhhh
Q 020071 153 KIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-SGFRFVNQENVFKV 231 (331)
Q Consensus 153 ~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-~~~~~i~~~~v~~~ 231 (331)
+++++|+|||+.+.|.+++.+++..++..+++++|+.++++++..+++.++||+|.+++.++++. ..++.|+.++|..+
T Consensus 161 kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~g~~It~edV~~l 240 (576)
T PRK14965 161 KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAEL 240 (576)
T ss_pred hhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998874 33457999999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------c--------------
Q 020071 232 CDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-------------E-------------- 284 (331)
Q Consensus 232 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~-------------~-------------- 284 (331)
++....+.++++++++..+|..+++.++.++...|.++..++..+.++++.+ +
T Consensus 241 lG~~~~~~l~~ll~al~~~d~~~al~~l~~l~~~G~~~~~~l~~Ll~~~RdLl~~k~~~~~~~~l~~~~~~~~~~~~~A~ 320 (576)
T PRK14965 241 LGVVDRRLLLDISAAVFGRDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAVGEPGDLLDLSEAELAELRAQAA 320 (576)
T ss_pred hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988887755542 0
Q ss_pred -cChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 020071 285 -MAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324 (331)
Q Consensus 285 -~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~ 324 (331)
++...+..+++.+.+++++|+.+.++++.||.++++++.+
T Consensus 321 ~~s~~~L~~~l~~l~~~~~~lk~~~~~~l~lE~lllkl~~~ 361 (576)
T PRK14965 321 AADAADLQRHLTLLLRAEGEMAHASFPRLVLEMALLKMATL 361 (576)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhc
Confidence 2233346889999999999999999999999999999974
No 10
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=8.4e-47 Score=358.02 Aligned_cols=311 Identities=18% Similarity=0.251 Sum_probs=278.4
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC----------------
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY---------------- 75 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~---------------- 75 (331)
.+|.+||||++|++++||++++..|++++..++++| +||+||+|+|||++|+.|++.++|...
T Consensus 4 ~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~ 83 (944)
T PRK14949 4 QVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIA 83 (944)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHh
Confidence 489999999999999999999999999999999999 599999999999999999999998521
Q ss_pred ---CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCC
Q 020071 76 ---REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSS 152 (331)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~ 152 (331)
...+++++..+..+++.+++++..+...+. .++++|+||||+|.|+.+++++|+++||+|+.+++||++|++..
T Consensus 84 ~g~~~DviEidAas~~kVDdIReLie~v~~~P~---~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~ 160 (944)
T PRK14949 84 QGRFVDLIEVDAASRTKVDDTRELLDNVQYRPS---RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQ 160 (944)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhh---cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCch
Confidence 123566777666788999999888776664 67899999999999999999999999999999999999999999
Q ss_pred CCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH-hhCCCccchhhhhhh
Q 020071 153 KIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT-YSGFRFVNQENVFKV 231 (331)
Q Consensus 153 ~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~-~~~~~~i~~~~v~~~ 231 (331)
+++++|+|||..+.|.|++.+++..+|++++..+++.++++++..|++.++|++|.++++++.+ +.+.+.++.+.|.++
T Consensus 161 kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala~~~~~It~~~V~~l 240 (944)
T PRK14949 161 KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQVMLTQVQTM 240 (944)
T ss_pred hchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999754 345567999999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc------------------------cCh
Q 020071 232 CDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE------------------------MAE 287 (331)
Q Consensus 232 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~------------------------~~~ 287 (331)
++......+..+++.+.++|...++.++..|+..|.++.+|+..|..+++.+- ++.
T Consensus 241 lG~iD~~~V~~llksI~~~D~~aaL~~l~~Ll~~G~D~~~ILr~Ll~~lRDill~k~~~~~~~l~i~~e~i~~~a~~~s~ 320 (944)
T PRK14949 241 LGSIDEQHVIALLKALTDADIGVLMQTCAQVLAFGADAQEVLRSLLELLHQITLTQFAPAAAQQSLYSEQIRAFAEQLSP 320 (944)
T ss_pred hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhccchHHHHHHHHHhCCH
Confidence 99988888999999999999999999999999999999999999877666431 122
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Q 020071 288 HLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRE 326 (331)
Q Consensus 288 ~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~~~ 326 (331)
..+..+++.+.++..+|+.+.|++++||.++++++.+..
T Consensus 321 ~~L~~~ie~l~~a~~~L~~n~n~rl~lE~~LLrl~~~~p 359 (944)
T PRK14949 321 EQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFVP 359 (944)
T ss_pred HHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCC
Confidence 333577899999999999999999999999999987644
No 11
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=9.5e-47 Score=340.05 Aligned_cols=308 Identities=22% Similarity=0.229 Sum_probs=267.3
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC----------------
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY---------------- 75 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~---------------- 75 (331)
.||.+||||++|++++||++++..|..++.+++++| ++|+||+|+|||++|+.+++.++|...
T Consensus 6 ~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~ 85 (484)
T PRK14956 6 EVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEIT 85 (484)
T ss_pred chhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHH
Confidence 589999999999999999999999999999999999 799999999999999999999998531
Q ss_pred ---CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCC
Q 020071 76 ---REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSS 152 (331)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~ 152 (331)
..+++++++....+++.+++.++.....+. .++++|+||||+|.++.+++++|++++|+|+.+++||++|+...
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~---~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~ 162 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPM---GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFH 162 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhh---cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChh
Confidence 235777887777788899988877766654 57789999999999999999999999999999999999999999
Q ss_pred CCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-hCCCccchhhhhhh
Q 020071 153 KIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-SGFRFVNQENVFKV 231 (331)
Q Consensus 153 ~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-~~~~~i~~~~v~~~ 231 (331)
+++++|+|||+.+.|.+++.+++..++++++.++|+.++++++..|++.++|++|.+++.|+.+. ...+.||.+.|.++
T Consensus 163 kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~ 242 (484)
T PRK14956 163 KIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKM 242 (484)
T ss_pred hccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998753 44557999999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-------------cChHhH-------
Q 020071 232 CDQPHPLHVKNMVRNVLEGKF-DDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-------------MAEHLK------- 290 (331)
Q Consensus 232 ~~~~~~~~i~~l~~~~~~~~~-~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~-------------~~~~~~------- 290 (331)
++...++.++++++++.++|. .+++.++.+|+..|+++..++..+..+.+.+- ++...+
T Consensus 243 lg~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (484)
T PRK14956 243 IGYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSIEFTHTLNLIRDSLADRESVNFPKEDLQKMKSDF 322 (484)
T ss_pred hCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccchhhccCCHHHHHHHHHHH
Confidence 999999999999999998775 68999999999999999999988877666531 122221
Q ss_pred --------HHHHHHHH----HH-HHHHhcCCCchHHHHHHHHHHHH
Q 020071 291 --------LEFMKEAG----FA-HMRICDGVGSYLQLCGLLAKLSI 323 (331)
Q Consensus 291 --------~~~~~~l~----~~-~~~l~~~~~~~l~l~~l~~~l~~ 323 (331)
.+++..+. .. +.+++...++++.+|..+++++.
T Consensus 323 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~r~~~E~~~~~l~~ 368 (484)
T PRK14956 323 ENVDSSKLNFLSGKLFEIYEKIKTIRLRNSFEIKVFTEIQIKKLVE 368 (484)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHhc
Confidence 22222221 11 34567788999999999999984
No 12
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.6e-46 Score=336.34 Aligned_cols=309 Identities=21% Similarity=0.226 Sum_probs=276.0
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC----------------
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY---------------- 75 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~---------------- 75 (331)
.||++||||++|++++||+++++.|.+.+..++.+| ++|+||+|+|||++|+.+++.+.|...
T Consensus 4 ~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~ 83 (363)
T PRK14961 4 QILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIE 83 (363)
T ss_pred HHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 589999999999999999999999999999999999 699999999999999999999987421
Q ss_pred ---CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCC
Q 020071 76 ---REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSS 152 (331)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~ 152 (331)
..++.++++....+++.+++.+..+...+. .++++|+||||+|.++..++++|++++|+|+.++.||++|++..
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~---~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~ 160 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSPS---KSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVE 160 (363)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhcCcc---cCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChH
Confidence 134566666555677888888877766664 67789999999999999999999999999999999999999999
Q ss_pred CCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-hCCCccchhhhhhh
Q 020071 153 KIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-SGFRFVNQENVFKV 231 (331)
Q Consensus 153 ~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-~~~~~i~~~~v~~~ 231 (331)
++.++++|||..++|.|++.+++.+|+..+++++|+.+++++++.++..++||+|.+++.++.+. .+.+.|+.++|.++
T Consensus 161 ~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~~~~It~~~v~~~ 240 (363)
T PRK14961 161 KIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVTDM 240 (363)
T ss_pred hhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998764 35678999999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----c----------------------
Q 020071 232 CDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-----E---------------------- 284 (331)
Q Consensus 232 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~-----~---------------------- 284 (331)
++...+..++++++++..++..+++.++.++...|+++.+++..+..+++.+ +
T Consensus 241 l~~~~~~~i~~l~~ai~~~~~~~~~~~~~~l~~~g~~~~~il~~l~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (363)
T PRK14961 241 LGLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQSFPKIWNTIFIKNYKNQIQKIAQN 320 (363)
T ss_pred HCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhcccchHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999987766642 0
Q ss_pred cChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 020071 285 MAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324 (331)
Q Consensus 285 ~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~ 324 (331)
++...+..+++.+.++..+++.++|+++++|.+++++...
T Consensus 321 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~e~~l~~~~~~ 360 (363)
T PRK14961 321 NKKTNIQLCYQILLNGRKELKFAPDQKIGVEMTLLRAINA 360 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHhC
Confidence 1222334778999999999999999999999999999864
No 13
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.1e-46 Score=349.02 Aligned_cols=311 Identities=18% Similarity=0.239 Sum_probs=276.7
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCC-----------------
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPN----------------- 74 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~----------------- 74 (331)
.+|.+||||++|+|++||+++++.|.+++..++++| +||+||+|+|||++|+.+++.++|+.
T Consensus 4 ~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~ 83 (509)
T PRK14958 4 QVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREID 83 (509)
T ss_pred hhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHh
Confidence 479999999999999999999999999999999999 79999999999999999999999853
Q ss_pred --CCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCC
Q 020071 75 --YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSS 152 (331)
Q Consensus 75 --~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~ 152 (331)
...+++++++.+..+++++++.++.....+. .++++|+||||+|.|+.+++|+|+++||+||++++||++|+++.
T Consensus 84 ~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~---~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~ 160 (509)
T PRK14958 84 EGRFPDLFEVDAASRTKVEDTRELLDNIPYAPT---KGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHH 160 (509)
T ss_pred cCCCceEEEEcccccCCHHHHHHHHHHHhhccc---cCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChH
Confidence 1235788888777899999999988777665 67899999999999999999999999999999999999999999
Q ss_pred CCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-hCCCccchhhhhhh
Q 020071 153 KIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-SGFRFVNQENVFKV 231 (331)
Q Consensus 153 ~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-~~~~~i~~~~v~~~ 231 (331)
+++++++|||..++|.+++.+++..++.++++++|+.++++++..+++.++|++|.++++++++. .+.+.||.++|.++
T Consensus 161 kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~~~~It~~~V~~~ 240 (509)
T PRK14958 161 KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTM 240 (509)
T ss_pred hchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998764 34678999999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-----------------------cChH
Q 020071 232 CDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-----------------------MAEH 288 (331)
Q Consensus 232 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~-----------------------~~~~ 288 (331)
++....+.++++++++..+|.+.++..+.+|...|+++..++..+..+++++. ++..
T Consensus 241 lg~~~~~~i~~ll~al~~~d~~~~l~~~~~l~~~g~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (509)
T PRK14958 241 LGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPEALIENDSEQLRQLAKLLDRE 320 (509)
T ss_pred HCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccccccchHHHHHHHHHhCCHH
Confidence 99999999999999999999999999999999999999888877766554421 1222
Q ss_pred hHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Q 020071 289 LKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRE 326 (331)
Q Consensus 289 ~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~~~ 326 (331)
.+...+.........++...++++.+|..++++.....
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 358 (509)
T PRK14958 321 DVQLFYQIGLIGQRDLAYSPTPQTGFEMTLLRMLAFYP 358 (509)
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCC
Confidence 22244555566788899999999999999999987654
No 14
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.7e-46 Score=354.38 Aligned_cols=309 Identities=24% Similarity=0.317 Sum_probs=280.2
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC----------------
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY---------------- 75 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~---------------- 75 (331)
.+|++||||++|++++||+++...|.+++.+++++| +|||||+|+|||++|+.+++.+.|...
T Consensus 5 ~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~ 84 (614)
T PRK14971 5 IVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAF 84 (614)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHH
Confidence 379999999999999999999999999999999999 799999999999999999999987421
Q ss_pred ----CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC
Q 020071 76 ----REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVS 151 (331)
Q Consensus 76 ----~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~ 151 (331)
+.++.++++.+..+++++++.+..+...++ +++++|+||||+|.|+.+++++|+++||+||.+++||++++..
T Consensus 85 ~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~---~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~ 161 (614)
T PRK14971 85 NEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQ---IGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEK 161 (614)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhCcc---cCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCc
Confidence 356778888777778899999988887776 7889999999999999999999999999999999999999999
Q ss_pred CCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-hCCCccchhhhhh
Q 020071 152 SKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-SGFRFVNQENVFK 230 (331)
Q Consensus 152 ~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-~~~~~i~~~~v~~ 230 (331)
.++.++|+|||.+++|.+++.+++..|+.+++.++|+.+++++++.|+..++||+|.++++++++. ..++.|+.+++.+
T Consensus 162 ~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~~~It~~~V~~ 241 (614)
T PRK14971 162 HKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVIE 241 (614)
T ss_pred hhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998864 2233499999999
Q ss_pred hcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc------------c--------------
Q 020071 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY------------E-------------- 284 (331)
Q Consensus 231 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------~-------------- 284 (331)
.+....++.+|++++++..++..+++..+.+|+..|+++..|+..+.++++.+ +
T Consensus 242 ~l~~~~~~~iF~L~dai~~~~~~~al~ll~~Ll~~g~~~~~iL~~L~~~fRdlL~~K~~~~~~ll~v~~~~~~~~~~qa~ 321 (614)
T PRK14971 242 NLNILDYDYYFRLTDALLAGKVSDSLLLFDEILNKGFDGSHFITGLASHFRDLLVCKDAATLQLLEVGESIRQRYLEQAQ 321 (614)
T ss_pred HhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcccccccccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998887755542 0
Q ss_pred -cChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 020071 285 -MAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324 (331)
Q Consensus 285 -~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~ 324 (331)
++...+.++++.+.++++++++|.|.+++||.++++++.+
T Consensus 322 ~~s~~~L~~~l~~l~e~d~~lK~~~n~~l~lE~lllkL~~~ 362 (614)
T PRK14971 322 KCPMSFLYRALKLCNQCDLNYRASKNKRLLVELTLIQLAQL 362 (614)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhcc
Confidence 2333446889999999999999999999999999999976
No 15
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.4e-46 Score=343.15 Aligned_cols=312 Identities=22% Similarity=0.279 Sum_probs=279.4
Q ss_pred CCCCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC-------------
Q 020071 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY------------- 75 (331)
Q Consensus 10 ~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~------------- 75 (331)
++-.||..||||++|+|++||++++..|...+.+++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 6 ~~y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C 85 (507)
T PRK06645 6 NQYIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC 85 (507)
T ss_pred ccccchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC
Confidence 344699999999999999999999999999999999988 899999999999999999999988521
Q ss_pred ----------CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEE
Q 020071 76 ----------REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFA 145 (331)
Q Consensus 76 ----------~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I 145 (331)
..+++++++.+..+++++++.++.....++ +++++|+||||+|.++..++++|++++|+|+++++||
T Consensus 86 ~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~---~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI 162 (507)
T PRK06645 86 TNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPL---QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFI 162 (507)
T ss_pred hHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccc---cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEE
Confidence 236777887777789999999998888876 7889999999999999999999999999999999999
Q ss_pred EeeCCCCCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhh----CCC
Q 020071 146 LACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS----GFR 221 (331)
Q Consensus 146 ~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~----~~~ 221 (331)
++++...+++++++|||+.+.|.+++.+++..|++.+++++|+.+++++++.|++.++||+|.++++++++.. ..+
T Consensus 163 ~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~~~~~~~~ 242 (507)
T PRK06645 163 FATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSAKSDN 242 (507)
T ss_pred EEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998742 234
Q ss_pred ccchhhhhhhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---c--------------
Q 020071 222 FVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY---E-------------- 284 (331)
Q Consensus 222 ~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~---~-------------- 284 (331)
.||.++|.++++...++.+|++++++.++|..+++..+++|+..|+++..++..+..+++.+ .
T Consensus 243 ~It~~~V~~llg~~~~~~if~L~~ai~~~d~~~Al~~l~~L~~~g~~~~~~l~~l~~~~~~l~~~k~~~~~~~~~~~~~~ 322 (507)
T PRK06645 243 IISPQVINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKVKMLPNYSLPIYESFN 322 (507)
T ss_pred CcCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccccccccchhHH
Confidence 79999999999999999999999999999999999999999999999999987655533321 0
Q ss_pred ---------cChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 020071 285 ---------MAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324 (331)
Q Consensus 285 ---------~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~ 324 (331)
++...+..+++.+.+....++...++.+.+|..+++++..
T Consensus 323 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~l~r~~~~ 371 (507)
T PRK06645 323 DRTKSILDKISLPHLSILWQIYNKGVGEIKISYNQLTETEMLVIKSIYS 371 (507)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 1223345888888999999999999999999999999853
No 16
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.5e-46 Score=362.58 Aligned_cols=310 Identities=20% Similarity=0.269 Sum_probs=277.8
Q ss_pred CCCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCC---------------
Q 020071 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPN--------------- 74 (331)
Q Consensus 11 ~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~--------------- 74 (331)
|.+.|.+||||++|++++||+++++.|.+++.+++++| +||+||+|+|||++|+.|++.++|..
T Consensus 1 ~~~~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~ 80 (824)
T PRK07764 1 MALALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVA 80 (824)
T ss_pred CchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHH
Confidence 56779999999999999999999999999999999999 79999999999999999999999842
Q ss_pred ------CCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEee
Q 020071 75 ------YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALAC 148 (331)
Q Consensus 75 ------~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~ 148 (331)
...++++++.....++++++++.+.....+. .++++|+||||+|.|+...+|+|+++||+++.+++|||+|
T Consensus 81 ~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~---~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 81 LAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPA---ESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred HHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchh---cCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 1245677887777789999998777666654 6789999999999999999999999999999999999999
Q ss_pred CCCCCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhh--CCCccchh
Q 020071 149 NVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS--GFRFVNQE 226 (331)
Q Consensus 149 ~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~--~~~~i~~~ 226 (331)
++.++++++|+|||+.+.|.+++.+++.+||.++++++|+.++++++..+++.++||+|.++++|+++.. +.+.||.+
T Consensus 158 t~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~~~~~~IT~e 237 (824)
T PRK07764 158 TEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGAGPEGVTYE 237 (824)
T ss_pred CChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998863 35679999
Q ss_pred hhhhhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc----------------------
Q 020071 227 NVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE---------------------- 284 (331)
Q Consensus 227 ~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~---------------------- 284 (331)
++.++++......++++++++..+|...++.++.+|+..|+++..++..+.++++.+-
T Consensus 238 ~V~allg~~~~~~I~~lidAL~~~D~a~al~~l~~Li~~G~dp~~~L~~LL~~fRDLL~vka~~~~~~~~l~~~p~d~~~ 317 (824)
T PRK07764 238 RAVALLGVTDSALIDEAVDALAAGDGAALFGTVDRVIEAGHDPRRFAEDLLERLRDLIVLQAVPDAAERGLVDAPADQLD 317 (824)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCcchhhhhccCCHHHHH
Confidence 9999999999999999999999999999999999999999999888887777555420
Q ss_pred --------cChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 020071 285 --------MAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSI 323 (331)
Q Consensus 285 --------~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~ 323 (331)
++...+.++++.+.++...++.+.+++|.+|.|+++++.
T Consensus 318 ~L~~qA~~~s~~~L~r~ie~l~ea~~~lrgn~nprL~LElLllrLll 364 (824)
T PRK07764 318 RMRAQAQRLGPAELTRAADVVNDGLTEMRGATSPRLLLELLCARMLL 364 (824)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHh
Confidence 112223477889999999999999999999999999983
No 17
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.8e-46 Score=340.96 Aligned_cols=309 Identities=21% Similarity=0.259 Sum_probs=277.9
Q ss_pred chhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC-----------------
Q 020071 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY----------------- 75 (331)
Q Consensus 14 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~----------------- 75 (331)
.++++|||++|++++||+.+++.|.+++.+++.+| ++||||+|+|||++|+.+++.+.|+..
T Consensus 5 ~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c 84 (397)
T PRK14955 5 VIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGEC 84 (397)
T ss_pred HHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCC
Confidence 58999999999999999999999999999999999 899999999999999999999998521
Q ss_pred ----------CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEE
Q 020071 76 ----------REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFA 145 (331)
Q Consensus 76 ----------~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I 145 (331)
+.+++.+++....+++++++..+.....++ +++++++||||+|.++.+.++.|++++|+|++.++||
T Consensus 85 ~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~---~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~I 161 (397)
T PRK14955 85 ESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQ---KGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFI 161 (397)
T ss_pred HHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchh---cCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEE
Confidence 124666776666678899998888877776 7889999999999999999999999999999999999
Q ss_pred EeeCCCCCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhh------C
Q 020071 146 LACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS------G 219 (331)
Q Consensus 146 ~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~------~ 219 (331)
++++...++.+++++||.+++|.|++.+++..|+..+++++++.+++++++.|+..++||+|.+.+.++++.. .
T Consensus 162 l~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~~~~~~~~ 241 (397)
T PRK14955 162 FATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSVESEG 241 (397)
T ss_pred EEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccccCC
Confidence 9998889999999999999999999999999999999999999999999999999999999999999998632 3
Q ss_pred CCccchhhhhhhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---------c------
Q 020071 220 FRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY---------E------ 284 (331)
Q Consensus 220 ~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~---------~------ 284 (331)
.+.|+.++|.+++....++++|++++++..++..+++.++.+|...|+++..|+..+.++.+.+ +
T Consensus 242 ~~~It~~~v~~~v~~~~~~~vf~l~~ai~~~~~~~al~~~~~l~~~~~~~~~iL~ll~~~~R~ll~~k~~~~~~~~~~~~ 321 (397)
T PRK14955 242 EGSIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVVHNLRSTRLVERPD 321 (397)
T ss_pred CCccCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccccccccCCH
Confidence 4689999999999999999999999999999999999999999999999999988887765542 1
Q ss_pred ------------cChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 020071 285 ------------MAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVR 325 (331)
Q Consensus 285 ------------~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~~ 325 (331)
++...+.++++.+.++++++++|+|+++.+|.|+++++..-
T Consensus 322 ~~~~~~~~~a~~~s~~~L~~~l~~l~e~d~~lK~~~~~~l~lE~lll~l~~~~ 374 (397)
T PRK14955 322 AVRERYERDAAKFSPEVIMQMTDLLLQTQKELKFQFEYQFRFELALLKLIEIG 374 (397)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhhC
Confidence 22223358899999999999999999999999999999765
No 18
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=100.00 E-value=9.7e-46 Score=329.92 Aligned_cols=314 Identities=47% Similarity=0.758 Sum_probs=284.0
Q ss_pred CCCCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCC
Q 020071 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRG 89 (331)
Q Consensus 10 ~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 89 (331)
.++.||.+||||.+|++++|+++++..+..+++.+..||++||||+|+|||++++.+++.+.+..+...++++++.+..+
T Consensus 2 ~~~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~ 81 (319)
T PRK00440 2 MMEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERG 81 (319)
T ss_pred CccCccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccc
Confidence 46779999999999999999999999999999999999999999999999999999999998887777788888776666
Q ss_pred hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccceeeecC
Q 020071 90 IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSR 169 (331)
Q Consensus 90 ~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~~i~~~~ 169 (331)
.+.+.+.+..+..... +...++++|+|||+|.++.+.++.|+++++.++.++++|++++...++.+++++||.+++|.|
T Consensus 82 ~~~~~~~i~~~~~~~~-~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~ 160 (319)
T PRK00440 82 IDVIRNKIKEFARTAP-VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSP 160 (319)
T ss_pred hHHHHHHHHHHHhcCC-CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCC
Confidence 6666666665554321 112468999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCCccchhhhhhhcCCCCHHHHHHHHHHHHc
Q 020071 170 LSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249 (331)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~ 249 (331)
++.+++..+++.+++++|+.+++++++.+++.++||+|.+++.++.++..++.||.++|..++....+..++++++++..
T Consensus 161 l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~~~~it~~~v~~~~~~~~~~~i~~l~~~~~~ 240 (319)
T PRK00440 161 LKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATGKEVTEEAVYKITGTARPEEIREMIELALN 240 (319)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999998777778999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcccChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 020071 250 GKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324 (331)
Q Consensus 250 ~~~~~~~~~l~~l~-~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~ 324 (331)
++..+++..+++|+ ..|.++.+|+..+.+.+...+++...+.+++..+.++++++++|.++.++||.|+++++.+
T Consensus 241 ~~~~~a~~~l~~ll~~~g~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~d~~~k~g~~~~~~le~~i~~~~~~ 316 (319)
T PRK00440 241 GDFTEAREKLRDLMIDYGLSGEDIIKQIHREVWSLDIPEELKVELIDAIGEADFRITEGANERIQLEALLAKLALL 316 (319)
T ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 99999999999987 5899999999888775544457888899999999999999999999999999999999875
No 19
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.9e-46 Score=350.67 Aligned_cols=309 Identities=20% Similarity=0.248 Sum_probs=279.2
Q ss_pred chhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC-----------------
Q 020071 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY----------------- 75 (331)
Q Consensus 14 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~----------------- 75 (331)
.+++||||++|++++||++++..|++++.+++.+| +||+||+|+|||++|+.+++.++|+..
T Consensus 5 ~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C 84 (620)
T PRK14954 5 VIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGEC 84 (620)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccC
Confidence 57899999999999999999999999999999999 899999999999999999999999431
Q ss_pred ----------CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEE
Q 020071 76 ----------REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFA 145 (331)
Q Consensus 76 ----------~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I 145 (331)
+.++.++++....+++++++.++.+...++ +++++||||||+|.++..++++|+++||+|+.+++||
T Consensus 85 ~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~---~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~I 161 (620)
T PRK14954 85 ESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQ---KGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFI 161 (620)
T ss_pred HHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhh---cCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEE
Confidence 235666766666678999999888877776 7899999999999999999999999999999999999
Q ss_pred EeeCCCCCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhC------
Q 020071 146 LACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSG------ 219 (331)
Q Consensus 146 ~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~------ 219 (331)
+++++..+++++|+|||+.++|.+++.+++..|+.++++++|+.+++++++.|++.++||+|.++++++++...
T Consensus 162 L~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~y~~~~~~ 241 (620)
T PRK14954 162 FATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVGSEA 241 (620)
T ss_pred EEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987432
Q ss_pred CCccchhhhhhhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---------c------
Q 020071 220 FRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY---------E------ 284 (331)
Q Consensus 220 ~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~---------~------ 284 (331)
.+.|+.++|.+++....++.+|++++++..++..+++.++.+|...|+++..|+..+.++.+.+ +
T Consensus 242 ~~~It~~~V~~lv~~~~e~~iF~L~dai~~~d~~~al~~l~~Ll~~ge~p~~iL~lL~~~fRdLL~vK~~~~~~l~~~~~ 321 (620)
T PRK14954 242 EKVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLVLYNLRSTRLIERPE 321 (620)
T ss_pred CCccCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccccccCCH
Confidence 5679999999999999999999999999999999999999999999999999999988866642 0
Q ss_pred ------------cChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 020071 285 ------------MAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVR 325 (331)
Q Consensus 285 ------------~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~~ 325 (331)
++...+.+++..+.+++++|+++.+.++.+|.++++++++.
T Consensus 322 ~v~~~l~~qA~~fs~~~L~~~l~~l~e~d~~LKtn~n~~l~lEllLlkl~~~~ 374 (620)
T PRK14954 322 SVKERYQQSAGGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIELV 374 (620)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcc
Confidence 11122347799999999999999999999999999999865
No 20
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.5e-46 Score=350.98 Aligned_cols=310 Identities=24% Similarity=0.339 Sum_probs=278.7
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC----------------
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY---------------- 75 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~---------------- 75 (331)
.+|.++|||++|++++||+++++.|.+++..++++| +||+||+|+|||++|+.+++.+.|...
T Consensus 6 ~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~ 85 (725)
T PRK07133 6 KALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNN 85 (725)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcC
Confidence 589999999999999999999999999999999999 699999999999999999999998532
Q ss_pred CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCC
Q 020071 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKII 155 (331)
Q Consensus 76 ~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~ 155 (331)
..+++++++....+++++++++..+...|+ .++++|+||||+|.|+..++++|+++||+||.+++||++|+.+.+++
T Consensus 86 ~~Dvieidaasn~~vd~IReLie~~~~~P~---~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 86 SLDIIEMDAASNNGVDEIRELIENVKNLPT---QSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred CCcEEEEeccccCCHHHHHHHHHHHHhchh---cCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 124455666555678899999998888886 78899999999999999999999999999999999999999999999
Q ss_pred hhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-hCCCccchhhhhhhcCC
Q 020071 156 EPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-SGFRFVNQENVFKVCDQ 234 (331)
Q Consensus 156 ~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-~~~~~i~~~~v~~~~~~ 234 (331)
++++|||+.+.|.|++.+++..++..++.++|+.+++++++.+++.++|++|.+++.++.+. .+.+.|+.+++.++++.
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~~~~It~e~V~ellg~ 242 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVEELFGL 242 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999998764 23456999999999999
Q ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------------------ccChHhHH
Q 020071 235 PHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-----------------------EMAEHLKL 291 (331)
Q Consensus 235 ~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~-----------------------~~~~~~~~ 291 (331)
...+.++++++++..++...++.++.+|...|.++..++..+..+.+.+ .++...+.
T Consensus 243 ~~~e~If~Ll~aI~~kd~~~aL~~l~~L~~~ged~~~iL~~Ll~~~RDlLl~k~~~~~~ll~~~d~~~l~~~~~s~~~l~ 322 (725)
T PRK07133 243 VSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNKTKDNSLLEYYSEEDLEKLKIDDDFAY 322 (725)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999998877765542 12233445
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 020071 292 EFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVR 325 (331)
Q Consensus 292 ~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~~ 325 (331)
.++..+.++..+++.++++++++|.++++++.+.
T Consensus 323 ~~le~i~~~~~~L~~n~n~~l~lE~lll~L~~~~ 356 (725)
T PRK07133 323 KFIEILFDLLKDLKISDNPNDTLEILIIKLLALS 356 (725)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcC
Confidence 7789999999999999999999999999998754
No 21
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=4.9e-46 Score=349.07 Aligned_cols=308 Identities=27% Similarity=0.359 Sum_probs=281.8
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC----------------
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY---------------- 75 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~---------------- 75 (331)
..|..+|||++|++++||+++.+.|.+++..++.+| +|||||+|+|||++|+.+++.++|...
T Consensus 4 ~al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~ 83 (559)
T PRK05563 4 QALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAIT 83 (559)
T ss_pred HHHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHh
Confidence 468899999999999999999999999999999999 799999999999999999999998531
Q ss_pred ---CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCC
Q 020071 76 ---REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSS 152 (331)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~ 152 (331)
..+++++++....+++.+++.+......|. .++++|+||||+|.|+..++++|++++|+||.+++||++|+.+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~---~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ 160 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPS---EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcc---cCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChh
Confidence 356788888777889999999988887776 78899999999999999999999999999999999999999999
Q ss_pred CCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-hCCCccchhhhhhh
Q 020071 153 KIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-SGFRFVNQENVFKV 231 (331)
Q Consensus 153 ~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-~~~~~i~~~~v~~~ 231 (331)
+++++|+|||+.+.|.+++.+++..|+..+++++|+.+++++++.+++.++|++|.+++.++.+. .+.+.||.++|.++
T Consensus 161 ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~~~~It~~~V~~v 240 (559)
T PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDALEV 240 (559)
T ss_pred hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998764 24567999999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc---------------------------
Q 020071 232 CDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE--------------------------- 284 (331)
Q Consensus 232 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~--------------------------- 284 (331)
++....+.++++++++..+|..+++..+.+++..|.++..++..+.++++.+-
T Consensus 241 lg~~~~~~i~~l~~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~Rdll~~k~~~~~~~~~~~~~~~~~~~~~a~~ 320 (559)
T PRK05563 241 TGSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPELEILDESTENDELFKELSEK 320 (559)
T ss_pred hCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988877655430
Q ss_pred cChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 020071 285 MAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSI 323 (331)
Q Consensus 285 ~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~ 323 (331)
++...+.++++.+.+++++++.+.++++.+|.++++++.
T Consensus 321 ~s~~~L~~~i~~L~~~~~~lk~~~~~~l~lE~lllkl~~ 359 (559)
T PRK05563 321 LDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCE 359 (559)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHh
Confidence 233345688999999999999999999999999999998
No 22
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.8e-46 Score=347.43 Aligned_cols=310 Identities=20% Similarity=0.252 Sum_probs=275.6
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCC------C----------
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPN------Y---------- 75 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~------~---------- 75 (331)
.+|.+||||++|++++||+++++.|.+++.+++++| +||+||+|+|||++++.|++.++|+. |
T Consensus 4 ~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~ 83 (830)
T PRK07003 4 QVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREID 83 (830)
T ss_pred HhHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHh
Confidence 469999999999999999999999999999999999 69999999999999999999999852 1
Q ss_pred ---CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCC
Q 020071 76 ---REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSS 152 (331)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~ 152 (331)
..++++++..+.+++++++++++.....+. .++++|+||||+|.|+...+|+|+++||+|+.+++||++|++..
T Consensus 84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~---~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~ 160 (830)
T PRK07003 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPV---DARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160 (830)
T ss_pred cCCCceEEEecccccccHHHHHHHHHHHHhccc---cCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChh
Confidence 135788888877889999999988776665 57899999999999999999999999999999999999999999
Q ss_pred CCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH-hhCCCccchhhhhhh
Q 020071 153 KIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT-YSGFRFVNQENVFKV 231 (331)
Q Consensus 153 ~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~-~~~~~~i~~~~v~~~ 231 (331)
+++++|+|||+.+.|.+++.+++.++|++++.++++.++++++..|++.++|++|.++++++.. ..+.+.|+.+.|..+
T Consensus 161 KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~~It~~~V~~~ 240 (830)
T PRK07003 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGM 240 (830)
T ss_pred hccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998654 345567999999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------------ccC
Q 020071 232 CDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-------------------------EMA 286 (331)
Q Consensus 232 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~-------------------------~~~ 286 (331)
++....+.++++++.+.++|..+++..+.+|...|.+...++..+..++.++ .++
T Consensus 241 LG~~d~~~i~~ll~aL~~~d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~~~~~~q~~~~~~~~~~~e~~~~~~~a~~~s 320 (830)
T PRK07003 241 LGALDQTYMVRLLDALAAGDGPEILAVADEMALRSLSFSTALQDLASLLHRIAWAQFAPASVLDEWPEAADLRRFAELLS 320 (830)
T ss_pred hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCccccccccchHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999988776666655443321 023
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 020071 287 EHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVR 325 (331)
Q Consensus 287 ~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~~ 325 (331)
...+..+++.+......++...++++.+|+.++++..+.
T Consensus 321 ~~~l~~~~qi~l~g~~el~~ap~~~~~~Em~llr~l~~~ 359 (830)
T PRK07003 321 PEQVQLFYQIATVGRGELGLAPDEYAGFTMTLLRMLAFE 359 (830)
T ss_pred HHHHHHHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhcCC
Confidence 333457788888999999999999999999999998653
No 23
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1e-45 Score=341.65 Aligned_cols=307 Identities=26% Similarity=0.322 Sum_probs=280.4
Q ss_pred hhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCC------------------C
Q 020071 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPN------------------Y 75 (331)
Q Consensus 15 ~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~------------------~ 75 (331)
+.+||||++|++++||++++..|.+++.+++++| +|||||+|+|||++|+.+++.+.|.+ .
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~ 83 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGA 83 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCC
Confidence 4599999999999999999999999999999999 59999999999999999999998742 2
Q ss_pred CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCC
Q 020071 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKII 155 (331)
Q Consensus 76 ~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~ 155 (331)
+.++.++++.+..+++.+++........++ .+++++|||||+|.++...+++|++++++|+.+++||++++.+.++.
T Consensus 84 h~dv~el~~~~~~~vd~iR~l~~~~~~~p~---~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~ 160 (504)
T PRK14963 84 HPDVLEIDAASNNSVEDVRDLREKVLLAPL---RGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMP 160 (504)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhccc---cCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCC
Confidence 346788888777788889988777776665 67899999999999999999999999999999999999999999999
Q ss_pred hhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCCccchhhhhhhcCCC
Q 020071 156 EPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQP 235 (331)
Q Consensus 156 ~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~ 235 (331)
++++|||..++|.|++.+++..|+.++++++|+.+++++++.|++.++||+|.+++.|+++....+.||.++|.++++..
T Consensus 161 ~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~ 240 (504)
T PRK14963 161 PTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGTPVTRKQVEEALGLP 240 (504)
T ss_pred hHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999987666689999999999999
Q ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-------------cccChHhHHHHHHHHHHHHH
Q 020071 236 HPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKN-------------YEMAEHLKLEFMKEAGFAHM 302 (331)
Q Consensus 236 ~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~-------------~~~~~~~~~~~~~~l~~~~~ 302 (331)
..+.++++++++.+++..+|+.++.+|+..|+++..|+..+.+..++ +.+++.....+++.+.+.++
T Consensus 241 ~~~~if~Li~al~~~d~~~Al~~l~~Ll~~G~~~~~Il~~L~~~~r~ll~~k~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 320 (504)
T PRK14963 241 PQERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLVEGLLEAFRAALYAELGLGGGPRLEGAEPRLLAAMTALDEQME 320 (504)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccCcccccccCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988873 22467778899999999999
Q ss_pred HHhcCCCchHHHHHHHHHHHHHH
Q 020071 303 RICDGVGSYLQLCGLLAKLSIVR 325 (331)
Q Consensus 303 ~l~~~~~~~l~l~~l~~~l~~~~ 325 (331)
++..+.+ +..+|..+++++...
T Consensus 321 ~~~~~~~-~~~l~~~l~~~~~~~ 342 (504)
T PRK14963 321 RFARRSD-ALSLELALLHALLAL 342 (504)
T ss_pred HHHhccc-hhHHHHHHHHHHhhh
Confidence 9988886 788999999998543
No 24
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.1e-45 Score=346.24 Aligned_cols=311 Identities=20% Similarity=0.281 Sum_probs=276.8
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC----------------
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY---------------- 75 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~---------------- 75 (331)
.+|++||||++|++++||++++..|.+.+..++++| +||+||+|+|||++|+.|++.++|...
T Consensus 4 ~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 4 QVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIE 83 (647)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHH
Confidence 589999999999999999999999999999999999 699999999999999999999998521
Q ss_pred ---CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCC
Q 020071 76 ---REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSS 152 (331)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~ 152 (331)
..+++++++.+..++++++++++.+...+. .++++|+||||+|.|+..++|+|+++||+||.+++||++|+++.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~---~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~ 160 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPA---RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhh---cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcc
Confidence 135677787766788999999988877765 68899999999999999999999999999999999999999999
Q ss_pred CCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-hCCCccchhhhhhh
Q 020071 153 KIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-SGFRFVNQENVFKV 231 (331)
Q Consensus 153 ~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-~~~~~i~~~~v~~~ 231 (331)
+++++|+|||..+.|.+++.+++..+|.+++.++++.++++++..|++.++|++|.+++.++.+. .+.+.|+.+++..+
T Consensus 161 kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~~~~~it~~~v~~~ 240 (647)
T PRK07994 161 KLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTDDVSAM 240 (647)
T ss_pred ccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997653 45567999999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc--------------------------c
Q 020071 232 CDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE--------------------------M 285 (331)
Q Consensus 232 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~--------------------------~ 285 (331)
.+....+.++++++++..+|...++.++.+|...|.+...++..+..+++.+- +
T Consensus 241 lg~~d~~~~~~ll~al~~~d~~~~l~~~~~l~~~g~d~~~~L~~l~~~lrdil~~q~~~~~~~~~~~d~~~~l~~la~~~ 320 (647)
T PRK07994 241 LGTLDDDQALSLLEALVEGDGERVMALINQLAERGPDWEGLLVELLELLHRIAMAQLLPAALDNDMADIELRLRELARTL 320 (647)
T ss_pred HccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccchhcccchhHHHHHHHHHHhC
Confidence 98888888999999999999999999999999999998877776655444320 2
Q ss_pred ChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Q 020071 286 AEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRE 326 (331)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~~~ 326 (331)
++..+...+..+.++..+|..+.|+++.+|.+++++.....
T Consensus 321 s~~~l~~~~q~~~~~~~~L~~n~n~~l~lE~~llr~~~~~P 361 (647)
T PRK07994 321 PPEDVQLYYQTLLIGRKDLPLAPDRRMGVEMTLLRMLAFHP 361 (647)
T ss_pred CHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhcCC
Confidence 33334467888999999999999999999999999987765
No 25
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.2e-45 Score=340.95 Aligned_cols=311 Identities=18% Similarity=0.224 Sum_probs=278.5
Q ss_pred CCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCC----------------
Q 020071 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPN---------------- 74 (331)
Q Consensus 12 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~---------------- 74 (331)
-.+|.+||||++|++++||+++.+.|.+++.+++++| +||+||+|+|||++|+.+++.++|..
T Consensus 2 Y~~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I 81 (702)
T PRK14960 2 YQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV 81 (702)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHH
Confidence 3579999999999999999999999999999999999 69999999999999999999999842
Q ss_pred ---CCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC
Q 020071 75 ---YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVS 151 (331)
Q Consensus 75 ---~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~ 151 (331)
...+++++++.+..+++++++.+......+. .++++|+||||+|.|+..++++|++++|+|+.++.||++|+++
T Consensus 82 ~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~---~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~ 158 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPT---QGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDP 158 (702)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhhhh---cCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECCh
Confidence 1236788888877789999999888776664 5789999999999999999999999999999999999999999
Q ss_pred CCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-hCCCccchhhhhh
Q 020071 152 SKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-SGFRFVNQENVFK 230 (331)
Q Consensus 152 ~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-~~~~~i~~~~v~~ 230 (331)
.+++++++|||..+.|.|++.+++..++.++++++|+.++++++..|++.++||+|.+++.++.+. .+.+.|+.++|.+
T Consensus 159 ~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIayg~g~IT~edV~~ 238 (702)
T PRK14960 159 QKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKE 238 (702)
T ss_pred HhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999997653 4567899999999
Q ss_pred hcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--------------------------c
Q 020071 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY--------------------------E 284 (331)
Q Consensus 231 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~--------------------------~ 284 (331)
+++....+.++++++++.+++...++..+.++...|.++..++..+..+++++ .
T Consensus 239 lLG~~d~e~IfdLldAI~k~d~~~al~~L~el~~~g~d~~~~l~~Ll~~lrdlll~~~~~~~~~~~~~~~~~~~~~la~~ 318 (702)
T PRK14960 239 MLGLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELGLKYSEEINAKILQLSKL 318 (702)
T ss_pred HhccCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999887777765544431 0
Q ss_pred cChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 020071 285 MAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVR 325 (331)
Q Consensus 285 ~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~~ 325 (331)
++...+..++..+.+....++...++++.+|.++++++.+.
T Consensus 319 ~s~~~l~~~~qi~l~~~~~l~~s~~~r~~lEm~llrl~~~~ 359 (702)
T PRK14960 319 ISAQDLQLYYQIACKGRSDLQLAVTQEQGFEMCVLRLLAFR 359 (702)
T ss_pred CCHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhCC
Confidence 23334457888888999999999999999999999998763
No 26
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=8.6e-46 Score=341.12 Aligned_cols=311 Identities=20% Similarity=0.240 Sum_probs=276.6
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCC-----------C-----
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPN-----------Y----- 75 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~-----------~----- 75 (331)
.+|.+||||++|++++||+++++.|.+++.+++++| +||+||+|+|||++|+.|++.++|.+ |
T Consensus 4 ~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~s 83 (700)
T PRK12323 4 QVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRA 83 (700)
T ss_pred hhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHH
Confidence 579999999999999999999999999999999999 69999999999999999999999842 1
Q ss_pred --------CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Q 020071 76 --------REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALA 147 (331)
Q Consensus 76 --------~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~ 147 (331)
..++++++..+..++++++++++.....+. .++++|+||||+|.|+..++|+|+++||+|+.++.||++
T Consensus 84 C~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~---~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILa 160 (700)
T PRK12323 84 CTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPT---AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILA 160 (700)
T ss_pred HHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchh---cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEE
Confidence 136778888777889999999988877765 678999999999999999999999999999999999999
Q ss_pred eCCCCCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH-hhCCCccchh
Q 020071 148 CNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT-YSGFRFVNQE 226 (331)
Q Consensus 148 ~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~-~~~~~~i~~~ 226 (331)
|++..+++++|+|||+.+.|.+++.+++.+++.+++.++++.+++++++.|++.++|++|.++++++.. ..+.+.|+.+
T Consensus 161 Ttep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia~~~~~It~~ 240 (700)
T PRK12323 161 TTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSEE 240 (700)
T ss_pred eCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999754 4455679999
Q ss_pred hhhhhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc----------------------
Q 020071 227 NVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE---------------------- 284 (331)
Q Consensus 227 ~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~---------------------- 284 (331)
.|.++++....+.++++++.+..+|...++..+..+...|.+...++..+...+.++.
T Consensus 241 ~V~~~LG~~d~~~i~~Ll~aL~~~d~~~~l~l~~~l~~~G~d~~~~L~dLl~~l~~l~l~q~~~~~~~~~~~~~~~~~~~ 320 (700)
T PRK12323 241 AVRGMLGAIDQSYLVRLLDALAAEDGAALLAIADEMAGRSLSFAGALQDLASLLQKIALAQVVPAAVQDDWPEADDIRRL 320 (700)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCchhcccccchHHHHHHH
Confidence 9999999999999999999999999999999999999999997666655544333210
Q ss_pred ---cChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Q 020071 285 ---MAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRE 326 (331)
Q Consensus 285 ---~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~~~ 326 (331)
++...+...+..+......++...++++.+|+.++++..+..
T Consensus 321 a~~~s~~~l~~~~q~~~~~~~el~~a~~~~~~~Em~llrll~~~p 365 (700)
T PRK12323 321 AGRFDAQEVQLFYQIANLGRSELALAPDEYAGFTMTLLRMLAFRP 365 (700)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhCCC
Confidence 233445678888899999999999999999999999987643
No 27
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.4e-45 Score=344.80 Aligned_cols=311 Identities=23% Similarity=0.306 Sum_probs=280.9
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCC-----------------
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPN----------------- 74 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~----------------- 74 (331)
..|.+||||++|++++||+++++.|.+++..++++| +||+||+|+|||++|+.+++.++|.+
T Consensus 4 ~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~ 83 (618)
T PRK14951 4 LVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQA 83 (618)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHH
Confidence 479999999999999999999999999999999999 69999999999999999999999852
Q ss_pred -------CCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Q 020071 75 -------YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALA 147 (331)
Q Consensus 75 -------~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~ 147 (331)
...++++++..+..+++++++.++.....+. .++++|+||||+|.|+..++|+|++++|+|+.++.||++
T Consensus 84 C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~---~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~ 160 (618)
T PRK14951 84 CRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPV---QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLA 160 (618)
T ss_pred HHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcc---cCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEE
Confidence 1235778888777889999999988777775 678999999999999999999999999999999999999
Q ss_pred eCCCCCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-hCCCccchh
Q 020071 148 CNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-SGFRFVNQE 226 (331)
Q Consensus 148 ~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-~~~~~i~~~ 226 (331)
|+++.+++++++|||..++|.+++.+++..++++++.++|+.++++++.+|++.++||+|.+++.++++. .+.+.||.+
T Consensus 161 Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~~~~It~~ 240 (618)
T PRK14951 161 TTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQLQEA 240 (618)
T ss_pred ECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997653 456789999
Q ss_pred hhhhhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc----------------------
Q 020071 227 NVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE---------------------- 284 (331)
Q Consensus 227 ~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~---------------------- 284 (331)
+|.++++....+.++++++++..+|...++.++.+|...|+++..++..+..+.+.+-
T Consensus 241 ~V~~~Lg~~~~~~i~~LldaL~~~d~~~al~~l~~l~~~G~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (618)
T PRK14951 241 AVRQMLGSVDRSHVFRLIDALAQGDGRTVVETADELRLNGLSAASTLEEMAAVLQRMAVLQAVPQAAAAATDPEAAEVAR 320 (618)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCcccccccChHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988877665421
Q ss_pred ----cChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Q 020071 285 ----MAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRE 326 (331)
Q Consensus 285 ----~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~~~ 326 (331)
++...+..++..+......+....++++.+|+.++++..+..
T Consensus 321 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~em~l~r~~~~~~ 366 (618)
T PRK14951 321 LAALMPADETQLLYSICLHGRAELGLAPDEYAALTMVLLRLLAFKP 366 (618)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhCCC
Confidence 233334577888889999999999999999999999986543
No 28
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.7e-45 Score=343.86 Aligned_cols=310 Identities=20% Similarity=0.212 Sum_probs=279.9
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC----------------
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY---------------- 75 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~---------------- 75 (331)
..|..||||++|++++||++++..|.+++.+++++| +|||||+|+|||++|+.+++.+.|...
T Consensus 4 ~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~ 83 (563)
T PRK06647 4 RGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSID 83 (563)
T ss_pred HHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHH
Confidence 368999999999999999999999999999999999 799999999999999999999998521
Q ss_pred ---CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCC
Q 020071 76 ---REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSS 152 (331)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~ 152 (331)
..+++++++....+++.+++........|+ .++++|+||||+|.|+.+++++|++++|+||++++||++++...
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~---~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~ 160 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPA---SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVH 160 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchh---cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChH
Confidence 245677776665678889888887777776 78899999999999999999999999999999999999999999
Q ss_pred CCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-hCCCccchhhhhhh
Q 020071 153 KIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-SGFRFVNQENVFKV 231 (331)
Q Consensus 153 ~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-~~~~~i~~~~v~~~ 231 (331)
+++++|+|||+.++|.+++.+++..++.+++.++|+.++++++..|++.++||+|.+.++++++. ...+.||.+++.++
T Consensus 161 kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~~~~It~e~V~~l 240 (563)
T PRK06647 161 KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIRSK 240 (563)
T ss_pred HhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998764 34567999999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----c--------------------cC
Q 020071 232 CDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-----E--------------------MA 286 (331)
Q Consensus 232 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~-----~--------------------~~ 286 (331)
++......++++++++.++|..+++.++.+++..|+++..++..+.++.+.+ + ++
T Consensus 241 lg~~~~~~if~LidaI~~~D~~~al~~l~~Ll~~G~d~~~iL~~Ll~~fRdLL~vK~G~~~~~~l~~~~e~l~k~~~~~s 320 (563)
T PRK06647 241 MGLTGDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLDCIEFFRELLFLKHGIKNEAFIGIKAERLPEKLREFD 320 (563)
T ss_pred hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCchhhhccccHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999998887766542 1 23
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 020071 287 EHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVR 325 (331)
Q Consensus 287 ~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~~ 325 (331)
...+.+++..+.+++++++.+.++++.||.++++++...
T Consensus 321 ~~~L~~~l~~Llea~~~lK~n~~~~l~lE~llikl~~~~ 359 (563)
T PRK06647 321 LSQIERAISVLLETYRDLQFSVNPRYELEINFSKILRLK 359 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 344468899999999999999999999999999999653
No 29
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.9e-45 Score=341.47 Aligned_cols=310 Identities=22% Similarity=0.281 Sum_probs=275.2
Q ss_pred CCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCC----------------
Q 020071 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPN---------------- 74 (331)
Q Consensus 12 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~---------------- 74 (331)
..||++||||++|++++||++++..|.+++.+++.+| +||+||+|+|||++|+.+++.++|+.
T Consensus 3 ~~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i 82 (624)
T PRK14959 3 HASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKV 82 (624)
T ss_pred cchHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHH
Confidence 4599999999999999999999999999999999877 79999999999999999999999852
Q ss_pred ---CCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC
Q 020071 75 ---YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVS 151 (331)
Q Consensus 75 ---~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~ 151 (331)
...+++++++....++++++++.+.+...++ .++++||||||+|.|+.+.+++|+++||+|+.+++||++|+..
T Consensus 83 ~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~---~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~ 159 (624)
T PRK14959 83 TQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPM---EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEP 159 (624)
T ss_pred hcCCCCceEEEecccccCHHHHHHHHHHHHhhhh---cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCCh
Confidence 1235777877666788899887777776665 6789999999999999999999999999999999999999999
Q ss_pred CCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-hCCCccchhhhhh
Q 020071 152 SKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-SGFRFVNQENVFK 230 (331)
Q Consensus 152 ~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-~~~~~i~~~~v~~ 230 (331)
.++.++++|||+.++|.+++.+++..+|.+++.++++.+++++++.|++.++||+|.++++++++. .+.+.|+.++|.+
T Consensus 160 ~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~~g~~~It~d~V~~ 239 (624)
T PRK14959 160 HKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARG 239 (624)
T ss_pred hhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998654 4556899999999
Q ss_pred hcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc--------------------------
Q 020071 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-------------------------- 284 (331)
Q Consensus 231 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~-------------------------- 284 (331)
+++....+.++++++++..+|...++.++.+|+..|+++..++..+..+.+.+-
T Consensus 240 ~lg~~~~e~vfeLl~AL~~~D~~aal~~l~~Ll~~g~d~~~iL~~Ll~~~RdLLl~k~~~~~~~~~l~i~~~~~~~~~~~ 319 (624)
T PRK14959 240 VLGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGEAALASLDLPEDEARQWLGW 319 (624)
T ss_pred HhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhccccchhhcccCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888877766444320
Q ss_pred ---cChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 020071 285 ---MAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324 (331)
Q Consensus 285 ---~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~ 324 (331)
++...+..+++.+.++..+++.|+|+++++|.++++++.+
T Consensus 320 A~~~s~~~L~~~l~~il~~~~~l~~n~n~rl~lE~lLL~l~~~ 362 (624)
T PRK14959 320 AKRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLAML 362 (624)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 1222234678889999999999999999999999999843
No 30
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=100.00 E-value=2.6e-45 Score=331.68 Aligned_cols=307 Identities=26% Similarity=0.354 Sum_probs=274.9
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC----------------
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY---------------- 75 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~---------------- 75 (331)
.||++||||++|++++||++.++.|.+.+.+|+.+| +|||||+|+|||++|+.+++.+.|+..
T Consensus 2 ~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~ 81 (355)
T TIGR02397 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN 81 (355)
T ss_pred ccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 489999999999999999999999999999999999 799999999999999999999987532
Q ss_pred ---CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCC
Q 020071 76 ---REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSS 152 (331)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~ 152 (331)
..+++.+++.+..+.+.+++.++.....++ ++++++|||||+|.++.+.+++|++++++|+.++.+|++++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~---~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~ 158 (355)
T TIGR02397 82 SGSSLDVIEIDAASNNGVDDIREILDNVKYAPS---SGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPH 158 (355)
T ss_pred cCCCCCEEEeeccccCCHHHHHHHHHHHhcCcc---cCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHH
Confidence 345677777655677788888888777665 68899999999999999999999999999999999999999999
Q ss_pred CCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhh-CCCccchhhhhhh
Q 020071 153 KIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS-GFRFVNQENVFKV 231 (331)
Q Consensus 153 ~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~-~~~~i~~~~v~~~ 231 (331)
++.+++++||..+.|+|++.+++..|+..+++++|+.+++++++.++..++||+|.+.+.++++.. ..+.||.++|.++
T Consensus 159 ~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~~~it~~~v~~~ 238 (355)
T TIGR02397 159 KIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGNITYEDVNEL 238 (355)
T ss_pred HHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998753 3456999999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------ccC--------------
Q 020071 232 CDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-----------EMA-------------- 286 (331)
Q Consensus 232 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~-----------~~~-------------- 286 (331)
+.......++++++++..++..+++.++.+|...|+++..++..+.++++.+ +++
T Consensus 239 ~~~~~~~~i~~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~~r~l~~~k~~~~~~~~i~~~~~~~l~~~a~~~ 318 (355)
T TIGR02397 239 LGLVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTPSNLLAVLESEQEFLKELALKL 318 (355)
T ss_pred hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999998887765542 122
Q ss_pred -hHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 020071 287 -EHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLS 322 (331)
Q Consensus 287 -~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~ 322 (331)
...+..+++.+.++++++++|+|+.+.+|.+++++|
T Consensus 319 s~~~L~~~l~~l~~~~~~lk~~~~~~l~le~l~~~~~ 355 (355)
T TIGR02397 319 SLEFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355 (355)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhC
Confidence 222347899999999999999999999999999986
No 31
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.6e-45 Score=336.34 Aligned_cols=309 Identities=28% Similarity=0.311 Sum_probs=278.2
Q ss_pred CCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC---------------
Q 020071 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY--------------- 75 (331)
Q Consensus 12 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~--------------- 75 (331)
-.||+.+|||++|++++||++++..|.+++++++++| +|||||+|+|||++|+.+++.++|.+.
T Consensus 3 y~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i 82 (486)
T PRK14953 3 YIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEI 82 (486)
T ss_pred chHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHH
Confidence 4599999999999999999999999999999999999 689999999999999999999987321
Q ss_pred ----CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC
Q 020071 76 ----REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVS 151 (331)
Q Consensus 76 ----~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~ 151 (331)
..+++++++....+.+.++++.......|+ .++++|+||||+|.++.+++++|++++++|+++++||+++++.
T Consensus 83 ~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~---~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~ 159 (486)
T PRK14953 83 DKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPI---KGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEY 159 (486)
T ss_pred hcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcc---cCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCH
Confidence 124566776666788889998888887776 7889999999999999999999999999999999999999999
Q ss_pred CCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-hCCCccchhhhhh
Q 020071 152 SKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-SGFRFVNQENVFK 230 (331)
Q Consensus 152 ~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-~~~~~i~~~~v~~ 230 (331)
.+++++++|||+.+.|.|++.+++..|+..+++.+|+.+++++++.|+..++||+|.+.+.++.+. .+.+.||.++|.+
T Consensus 160 ~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~~~~It~~~V~~ 239 (486)
T PRK14953 160 DKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVVEE 239 (486)
T ss_pred HHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998873 4466799999999
Q ss_pred hcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc------c----------------cChH
Q 020071 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY------E----------------MAEH 288 (331)
Q Consensus 231 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------~----------------~~~~ 288 (331)
+++......++++++++..++...++.++.+|...|.++..++..+.++++.+ + ++..
T Consensus 240 ~lg~~~~~~vf~Li~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~~rdll~~k~~~~~~~~~~~~~~~~~~~~~~~ 319 (486)
T PRK14953 240 FLGIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLNKSLKNPEEVFQVEDFYRKLEKPLE 319 (486)
T ss_pred HhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCChhhhcchHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999998877653 1 1123
Q ss_pred hHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 020071 289 LKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324 (331)
Q Consensus 289 ~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~ 324 (331)
.+..+++.+.++..+++. +|+++++|.++++++.+
T Consensus 320 ~l~~~~~~~~~~~~~l~~-~~~~~~~E~~ll~l~~~ 354 (486)
T PRK14953 320 ALLYLEDVINKAFSEART-RDPLRAYELAILKLLYV 354 (486)
T ss_pred HHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHhh
Confidence 345678889999999999 99999999999999854
No 32
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.4e-45 Score=334.28 Aligned_cols=308 Identities=26% Similarity=0.302 Sum_probs=278.2
Q ss_pred chhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC-----------------
Q 020071 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY----------------- 75 (331)
Q Consensus 14 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~----------------- 75 (331)
.|.++|||++|++++||+++...|.+.+.+++++| ++||||||+|||++|+.+++.+.|...
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~ 82 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDE 82 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhc
Confidence 58999999999999999999999999999999998 799999999999999999999987532
Q ss_pred --CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCC
Q 020071 76 --REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSK 153 (331)
Q Consensus 76 --~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~ 153 (331)
..+++++++....+++.+++........++ .++++++||||+|.++.++++.|++++++|+.++++|++++++.+
T Consensus 83 g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~---~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~k 159 (472)
T PRK14962 83 GTFMDVIELDAASNRGIDEIRKIRDAVGYRPM---EGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEK 159 (472)
T ss_pred CCCCccEEEeCcccCCHHHHHHHHHHHhhChh---cCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHh
Confidence 236788888777788888887776666654 678999999999999999999999999999999999999998889
Q ss_pred CChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhh-CCCccchhhhhhhc
Q 020071 154 IIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS-GFRFVNQENVFKVC 232 (331)
Q Consensus 154 l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~-~~~~i~~~~v~~~~ 232 (331)
+.++++|||..+.|.|++.+++..+++.+++.+++.+++++++.|++.++||+|.+++.|+.+.. ..+.||.++|.+++
T Consensus 160 l~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l 239 (472)
T PRK14962 160 VPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEAL 239 (472)
T ss_pred hhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998653 33469999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cccCh-HhHHHHHHHHHHHHHHHhcCCCc
Q 020071 233 DQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKN-YEMAE-HLKLEFMKEAGFAHMRICDGVGS 310 (331)
Q Consensus 233 ~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~-~~~~~-~~~~~~~~~l~~~~~~l~~~~~~ 310 (331)
+....+.++++++++.++|.++|+.++.+|+..|++|..|++.+...+.+ +++.+ .....++..+.++-..++.--..
T Consensus 240 ~~~~~~~i~~li~si~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~e~~ 319 (472)
T PRK14962 240 GLIPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFAEEK 319 (472)
T ss_pred cCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCcchH
Confidence 99999999999999999999999999999999999999999999888776 45555 66778888888888899988888
Q ss_pred hHHHHHHHHHHHHH
Q 020071 311 YLQLCGLLAKLSIV 324 (331)
Q Consensus 311 ~l~l~~l~~~l~~~ 324 (331)
.+..+.++++++.-
T Consensus 320 ~~l~~~~~~~~~~~ 333 (472)
T PRK14962 320 RLVCKLGSASIATR 333 (472)
T ss_pred HHHHHHHHHHHHHh
Confidence 88999999888853
No 33
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=7.3e-45 Score=336.13 Aligned_cols=312 Identities=19% Similarity=0.224 Sum_probs=276.8
Q ss_pred CCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC---------------
Q 020071 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY--------------- 75 (331)
Q Consensus 12 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~--------------- 75 (331)
-.||++||||++|++++||++++..|.+.+..++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 3 y~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i 82 (546)
T PRK14957 3 YQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAI 82 (546)
T ss_pred chhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 3589999999999999999999999999999999999 799999999999999999999998421
Q ss_pred ----CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC
Q 020071 76 ----REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVS 151 (331)
Q Consensus 76 ----~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~ 151 (331)
..++++++.....++++++++++.+...++ .++++|+||||+|.++..++++|+++||+||.+++||++|++.
T Consensus 83 ~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~---~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~ 159 (546)
T PRK14957 83 NNNSFIDLIEIDAASRTGVEETKEILDNIQYMPS---QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDY 159 (546)
T ss_pred hcCCCCceEEeecccccCHHHHHHHHHHHHhhhh---cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECCh
Confidence 235667777666788999999988887776 7889999999999999999999999999999999999999999
Q ss_pred CCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-hCCCccchhhhhh
Q 020071 152 SKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-SGFRFVNQENVFK 230 (331)
Q Consensus 152 ~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-~~~~~i~~~~v~~ 230 (331)
.+++++++|||..++|.|++.+++..++.++++++|+.+++++++.+++.++||+|.+++.++.+. ...+.|+.+++.+
T Consensus 160 ~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~~~~It~~~V~~ 239 (546)
T PRK14957 160 HKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQIKQ 239 (546)
T ss_pred hhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999765 2347899999999
Q ss_pred hcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-----------------------c--cc
Q 020071 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKN-----------------------Y--EM 285 (331)
Q Consensus 231 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~-----------------------~--~~ 285 (331)
+++....+.++++++++.+++..+++..+.++...|.+..+++..+..+... + .+
T Consensus 240 ~l~~~~~~~v~~ll~Al~~~d~~~~l~~~~~l~~~~~~~~~~l~~l~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~a~~~ 319 (546)
T PRK14957 240 MLGIIDSEEVYSIINAIIDNDPKAILPAIKNLALTESSADAVLDRIAEIWFACCIYSFTQSLDAVNDIDVDIINNILAKI 319 (546)
T ss_pred HHccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHhC
Confidence 9999888999999999999999999999999999898887777665421100 0 13
Q ss_pred ChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Q 020071 286 AEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRE 326 (331)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~~~ 326 (331)
++..+..+++.+.++..+++.+.|.++++|..++++.....
T Consensus 320 s~~~l~~~~~~~~~~~~~l~~~~~~~~~~em~l~r~~~~~p 360 (546)
T PRK14957 320 SIEQAHFLYQLTITAKKDIALAPNFETGVTMAILRLIAFQK 360 (546)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 45555688999999999999999999999999999987653
No 34
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=9.9e-45 Score=337.93 Aligned_cols=310 Identities=21% Similarity=0.295 Sum_probs=279.6
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC----------------
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY---------------- 75 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~---------------- 75 (331)
.+|.+||||++|++++||+++++.|.+++..++++| +||+||+|+|||++|+.+++.++|+..
T Consensus 4 ~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~ 83 (709)
T PRK08691 4 QVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQID 83 (709)
T ss_pred hhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHh
Confidence 479999999999999999999999999999999999 799999999999999999999998631
Q ss_pred ---CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCC
Q 020071 76 ---REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSS 152 (331)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~ 152 (331)
..++++++.....+++.+++++......++ .++++|+||||+|.++..++++|+++||+|+.+++||++|++..
T Consensus 84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~---~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~ 160 (709)
T PRK08691 84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPT---AGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPH 160 (709)
T ss_pred ccCccceEEEeccccCCHHHHHHHHHHHHhhhh---hCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 124567777777788999999887766665 67899999999999999999999999999999999999999999
Q ss_pred CCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhh-CCCccchhhhhhh
Q 020071 153 KIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS-GFRFVNQENVFKV 231 (331)
Q Consensus 153 ~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~-~~~~i~~~~v~~~ 231 (331)
+++++++|||..+.|.+++.+++..+|.++++++|+.++++++..|++.++||+|.++++++++.. +.+.|+.++|..+
T Consensus 161 kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~g~It~e~V~~l 240 (709)
T PRK08691 161 KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQM 240 (709)
T ss_pred ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987643 4568999999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-------------------------cC
Q 020071 232 CDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-------------------------MA 286 (331)
Q Consensus 232 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~-------------------------~~ 286 (331)
++....+.++++++++..++...++..+++|...|.+...++..+..+++++. ++
T Consensus 241 LG~~d~~~If~LldAL~~~d~~~al~~l~~L~~~G~d~~~~l~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 320 (709)
T PRK08691 241 IGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPSALAHDDPDSDILHRLAQTIS 320 (709)
T ss_pred HcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCchhccccchHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999988877665521 23
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 020071 287 EHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVR 325 (331)
Q Consensus 287 ~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~~ 325 (331)
...+..++..+......++...++++.+|..++++..+.
T Consensus 321 ~~~l~~~~q~~l~~~~~l~~a~~~~~~~Em~llrl~~~~ 359 (709)
T PRK08691 321 GEQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRMLAFA 359 (709)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcC
Confidence 333457888889999999999999999999999998654
No 35
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.8e-44 Score=322.87 Aligned_cols=308 Identities=24% Similarity=0.336 Sum_probs=274.4
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCC-------CCCceEEeec
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPN-------YREAVMELNA 84 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~-------~~~~~~~~~~ 84 (331)
.+|++||||++|++++||+.+++.+.+.++++..+| ++||||+|+|||++|+.+++.+.|.+ +...+++++.
T Consensus 5 ~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~ 84 (367)
T PRK14970 5 VVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDA 84 (367)
T ss_pred HHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecc
Confidence 489999999999999999999999999999999887 79999999999999999999998742 2345566666
Q ss_pred CCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccce
Q 020071 85 SDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAI 164 (331)
Q Consensus 85 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~~ 164 (331)
....+.+.+++.+..+...++ ++++++|||||+|.++...++.|++++++|+.++.+|++++...++.++++|||..
T Consensus 85 ~~~~~~~~i~~l~~~~~~~p~---~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~ 161 (367)
T PRK14970 85 ASNNSVDDIRNLIDQVRIPPQ---TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQI 161 (367)
T ss_pred ccCCCHHHHHHHHHHHhhccc---cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhccee
Confidence 555667888888887766665 67899999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhh-CCCccchhhhhhhcCCCCHHHHHHH
Q 020071 165 VRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS-GFRFVNQENVFKVCDQPHPLHVKNM 243 (331)
Q Consensus 165 i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~-~~~~i~~~~v~~~~~~~~~~~i~~l 243 (331)
++|.+++++++..|+..+++++|+.+++++++.++..++||+|.+.+.++++.. ..+.||.+++..++....++.++++
T Consensus 162 v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~~if~l 241 (367)
T PRK14970 162 FDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYINV 241 (367)
T ss_pred EecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998753 1234999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc------------c---------------cChHhHHHHHHH
Q 020071 244 VRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY------------E---------------MAEHLKLEFMKE 296 (331)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------~---------------~~~~~~~~~~~~ 296 (331)
++++..++..+++..++++...|+++..|+..+.++.+.+ + ++...+.+++..
T Consensus 242 ~~ai~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~fr~ll~~k~~~~~~~l~~~~~~~~~~~~~a~~~s~~~L~~~l~~ 321 (367)
T PRK14970 242 TDLILENKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVSKTPATIALLEVGEQAKKRYEVQSQKVSQSFLLSGIDI 321 (367)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCccccccCCHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999887765542 1 233334588999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHH
Q 020071 297 AGFAHMRICDGVGSYLQLCGLLAKLSI 323 (331)
Q Consensus 297 l~~~~~~l~~~~~~~l~l~~l~~~l~~ 323 (331)
+.+++++++++.++.+.+|.++++++.
T Consensus 322 l~~~d~~lK~~~~~~l~lE~~l~~l~~ 348 (367)
T PRK14970 322 ANDCDLKYKLSKNQRLLVELALMQLAS 348 (367)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhh
Confidence 999999999999999999999999975
No 36
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.4e-44 Score=337.91 Aligned_cols=310 Identities=23% Similarity=0.308 Sum_probs=277.8
Q ss_pred CCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC---------------
Q 020071 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY--------------- 75 (331)
Q Consensus 12 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~--------------- 75 (331)
-.||+++|||++|++++||++++..|.+++..++.+| +||+||+|+|||++|+.+++.+.|...
T Consensus 3 ~~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~ 82 (620)
T PRK14948 3 YEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCR 82 (620)
T ss_pred cchHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHH
Confidence 3589999999999999999999999999999998866 899999999999999999999998521
Q ss_pred ------CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeC
Q 020071 76 ------REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACN 149 (331)
Q Consensus 76 ------~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~ 149 (331)
+.++++++.....+++.+++.+......++ .++++|+||||+|.|+.+++++|++++|+|+.+++||++|+
T Consensus 83 ~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~---~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~ 159 (620)
T PRK14948 83 AIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPV---QARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATT 159 (620)
T ss_pred HHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChh---cCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeC
Confidence 125666777666788999999988877765 67899999999999999999999999999999999999999
Q ss_pred CCCCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCCccchhhhh
Q 020071 150 VSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVF 229 (331)
Q Consensus 150 ~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~ 229 (331)
++.+++++|+|||..+.|.+++.+++..++.+++.++++.++++++..+++.++|++|.+.++++++....+.||.++++
T Consensus 160 ~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~~~~It~e~V~ 239 (620)
T PRK14948 160 DPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLPGPITPEAVW 239 (620)
T ss_pred ChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999886556689999999
Q ss_pred hhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----c--------------------
Q 020071 230 KVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-----E-------------------- 284 (331)
Q Consensus 230 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~-----~-------------------- 284 (331)
++++...+..++++++++..++...++.++.+|...|.++..++..+.++++.+ +
T Consensus 240 ~lvg~~~e~~i~~Ll~ai~~~d~~~al~~~~~Ll~~g~~p~~iL~~L~~~~RDLL~~K~~~~~~~l~~i~~d~~~~l~~~ 319 (620)
T PRK14948 240 DLLGAVPEQDLLNLLKALASNDPESLLDSCRQLLDRGREPLAILQGLAAFYRDLLLAKTAPNRPDLVAVSQQTWDELCKL 319 (620)
T ss_pred HHhcCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccchhhhhcCHHHHHHHHHH
Confidence 999998899999999999999999999999999999999998888877755542 0
Q ss_pred ---cChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 020071 285 ---MAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324 (331)
Q Consensus 285 ---~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~ 324 (331)
++...+.++++.+.+++++++++.++++.||.+++++...
T Consensus 320 A~~~s~~~L~~~i~~L~eae~~LK~n~nprL~LE~lLl~l~~~ 362 (620)
T PRK14948 320 AKQINLERILQWQQHLKGSEYQLKNSTQPRLWLEVTLLGLLPS 362 (620)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhhcc
Confidence 1223335889999999999999999999999999999854
No 37
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=100.00 E-value=1.2e-43 Score=318.73 Aligned_cols=306 Identities=33% Similarity=0.522 Sum_probs=267.9
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC----
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR---- 88 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~---- 88 (331)
.+|.+||||++|++++|+++++..|.+++..+..||++|+||+|+|||++|+++++.+.|..+..+++.+++.+..
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~ 82 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGK 82 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcch
Confidence 4899999999999999999999999999999998999999999999999999999999877655566777764321
Q ss_pred ----------------------ChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 020071 89 ----------------------GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFAL 146 (331)
Q Consensus 89 ----------------------~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~ 146 (331)
..+.+++.++...... ...+++++|||||+|.++.+.++.|.+++++++.+++||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il 160 (337)
T PRK12402 83 KYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYR--PLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFII 160 (337)
T ss_pred hhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcC--CCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEE
Confidence 1123333333332221 1145678999999999999999999999999998899999
Q ss_pred eeCCCCCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCCccchh
Q 020071 147 ACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQE 226 (331)
Q Consensus 147 ~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~ 226 (331)
+++.+.++.+++++||..+.|.|++.+++..++.+++.++++.+++++++.|++.++||+|.+++.++.++...+.||.+
T Consensus 161 ~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~~~~~~It~~ 240 (337)
T PRK12402 161 ATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAALAAGEITME 240 (337)
T ss_pred EeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99888899999999999999999999999999999999999999999999999999999999999999887666789999
Q ss_pred hhhhhcCC-CCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcccChHhHHHHHHHHHHHHHHH
Q 020071 227 NVFKVCDQ-PHPLHVKNMVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRI 304 (331)
Q Consensus 227 ~v~~~~~~-~~~~~i~~l~~~~~~~~~~~~~~~l~~l~-~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l 304 (331)
++.+++.. ..+..++++++++.+++..+++.++.+|. ..|.++..|+..+.+.+..- ++...+.+++..+.++++++
T Consensus 241 ~v~~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~~-~~~~~l~~~~~~l~~~d~~l 319 (337)
T PRK12402 241 AAYEALGDVGTDEVIESLLDAAEAGDFTDARKTLDDLLIDEGLSGGEVLEELLRVARSR-YRGDNLARLHRLAADADARL 319 (337)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHH
Confidence 99999887 66889999999999999999999999987 79999999999887655442 77788899999999999999
Q ss_pred hcCCCchHHHHHHHHHH
Q 020071 305 CDGVGSYLQLCGLLAKL 321 (331)
Q Consensus 305 ~~~~~~~l~l~~l~~~l 321 (331)
++|.++.++||.++.++
T Consensus 320 k~g~~~~~~le~~i~~~ 336 (337)
T PRK12402 320 TDGANDRIQLEALLAEL 336 (337)
T ss_pred HcCCCHHHHHHHHHHhh
Confidence 99999999999999886
No 38
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=7.6e-44 Score=329.19 Aligned_cols=269 Identities=23% Similarity=0.315 Sum_probs=247.2
Q ss_pred CCCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC--------------
Q 020071 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY-------------- 75 (331)
Q Consensus 11 ~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~-------------- 75 (331)
+..+|.+||||++|++++||+.++..|.+++.+++.+| +||+||+|+|||++|+.+++.+.|.++
T Consensus 2 ~~~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~ 81 (605)
T PRK05896 2 SEITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCES 81 (605)
T ss_pred cchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 34689999999999999999999999999999999999 899999999999999999999998542
Q ss_pred -----CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 76 -----REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 76 -----~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
..+++++++....+++++++.+..+...++ .++++|+||||+|.|+..++++|+++||+||.++++|++|+.
T Consensus 82 i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~---~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~ 158 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPT---TFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTE 158 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHHHHHHHHhchh---hCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCC
Confidence 235677777666788999999988888776 678999999999999999999999999999999999999999
Q ss_pred CCCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhh-CCCccchhhhh
Q 020071 151 SSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS-GFRFVNQENVF 229 (331)
Q Consensus 151 ~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~-~~~~i~~~~v~ 229 (331)
+.+++++++|||+.+.|.|++.+++..|+..++.++|+.+++++++.+++.++|++|.+++.++.+.. .+..|+.++|.
T Consensus 159 ~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~~~~It~e~V~ 238 (605)
T PRK05896 159 FQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDIN 238 (605)
T ss_pred hHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998753 22349999999
Q ss_pred hhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 020071 230 KVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKN 282 (331)
Q Consensus 230 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~ 282 (331)
++++......++++++++..++..+++.++.+|...|+++.+++..+..+.+.
T Consensus 239 ellg~~~~~~Vf~Ll~AI~~kd~~~al~~l~~Ll~~ge~~~~il~~L~~~~RD 291 (605)
T PRK05896 239 KTFGLVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLLID 291 (605)
T ss_pred HHhccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999888899999999999999999999999999999999999998887765
No 39
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=9.4e-44 Score=331.49 Aligned_cols=311 Identities=20% Similarity=0.250 Sum_probs=278.1
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC----------------
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY---------------- 75 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~---------------- 75 (331)
.+|++||||++|++++||+++++.|.+++..++++| +||+||+|+|||++|+.+++.++|+..
T Consensus 4 ~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~ 83 (527)
T PRK14969 4 QVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEID 83 (527)
T ss_pred HHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 479999999999999999999999999999999999 699999999999999999999998521
Q ss_pred ---CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCC
Q 020071 76 ---REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSS 152 (331)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~ 152 (331)
..+++++++....+++.+++.+......+. .++++|+||||+|.|+.+++|+|++++|+||.+++||++|+++.
T Consensus 84 ~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~---~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~ 160 (527)
T PRK14969 84 SGRFVDLIEVDAASNTQVDAMRELLDNAQYAPT---RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQ 160 (527)
T ss_pred cCCCCceeEeeccccCCHHHHHHHHHHHhhCcc---cCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChh
Confidence 125667777666788999999888777775 68899999999999999999999999999999999999999999
Q ss_pred CCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-hCCCccchhhhhhh
Q 020071 153 KIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-SGFRFVNQENVFKV 231 (331)
Q Consensus 153 ~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-~~~~~i~~~~v~~~ 231 (331)
+++++++|||+.++|.+++.+++..++.++++++|+.+++++++.|++.++|++|.+++.++.+. .+.+.|+.++|.++
T Consensus 161 kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~~~~I~~~~v~~~ 240 (527)
T PRK14969 161 KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEVRAM 240 (527)
T ss_pred hCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998764 45778999999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-------------------------cC
Q 020071 232 CDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-------------------------MA 286 (331)
Q Consensus 232 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~-------------------------~~ 286 (331)
++....+.++++++++..++...++..+++|...|.+...++..+..+.+.+- ++
T Consensus 241 ~~~~~~~~i~~ll~al~~~~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rd~~~~~~~~~~~~~~~~~~~~~~~~a~~~s 320 (527)
T PRK14969 241 LGAIDQDYLFALLEALLAQDGAALLAIADAMEERSLSFDAALQDLAALLHRLAIAQTVPDSIADDLPERDRLLDLAKRLS 320 (527)
T ss_pred HCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCcccccccchHHHHHHHHHHcCC
Confidence 99988899999999999999999999999999999998888877655444320 23
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Q 020071 287 EHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRE 326 (331)
Q Consensus 287 ~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~~~ 326 (331)
+..+..+++.+.++...+....++++.+|..++++.....
T Consensus 321 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~~ 360 (527)
T PRK14969 321 PEDIQLYYQIALHGRRDLGLAPDEYAGFTMTLLRMLAFRP 360 (527)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhccCC
Confidence 3444578899999999999999999999999999986654
No 40
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.4e-44 Score=326.78 Aligned_cols=310 Identities=25% Similarity=0.338 Sum_probs=281.7
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC----------------
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY---------------- 75 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~---------------- 75 (331)
.++.-||||+.|+|++||+++...|...+..+++.| ++|+||.|+|||++|+.+++.++|.+.
T Consensus 4 q~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 4 QVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEIN 83 (515)
T ss_pred HHHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhh
Confidence 468899999999999999999999999999999999 899999999999999999999999751
Q ss_pred ---CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCC
Q 020071 76 ---REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSS 152 (331)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~ 152 (331)
..++++++.....++++++++++.....|. .+++||+||||+|.|+..+.|+|++++|+||.++.|||+|+++.
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~---~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~ 160 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPS---EGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQ 160 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCc---cccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcC
Confidence 135667777777899999999999999887 88999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-hCCCccchhhhhhh
Q 020071 153 KIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-SGFRFVNQENVFKV 231 (331)
Q Consensus 153 ~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-~~~~~i~~~~v~~~ 231 (331)
++++|+.|||+.+.|+.++.+++...|..++.++++.++++++..+++.++|++|.+..+++.+. .+.+.||.+.|..+
T Consensus 161 Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~~~It~~~v~~~ 240 (515)
T COG2812 161 KIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGEITLESVRDM 240 (515)
T ss_pred cCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccCCcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998775 34478999999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-c------------c--------------
Q 020071 232 CDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKN-Y------------E-------------- 284 (331)
Q Consensus 232 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~-~------------~-------------- 284 (331)
++....+.+.+++.++..+|...++..+++++..|.++..++..+..+.+. + +
T Consensus 241 lG~~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~G~~~~~~l~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ 320 (515)
T COG2812 241 LGLTDIEKLLSLLEAILKGDAKEALRLINELIEEGKDPEAFLEDLLNFLRDLLLFKQTVPNELQLNTTEIEERTKELASQ 320 (515)
T ss_pred hCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhcccchhhccchhhhHHHHHHHHh
Confidence 999999999999999999999999999999999999999888887665543 1 0
Q ss_pred cChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 020071 285 MAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVR 325 (331)
Q Consensus 285 ~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~~ 325 (331)
++......++..+......++...++.+.+|.++.++....
T Consensus 321 ~~~~~l~~~~~~~~~~~~e~~~s~~~~~~~E~~lirl~~~~ 361 (515)
T COG2812 321 ISVLNLQRLYQLLLPGLKELKRSLSPRLGLEMTLIRLLEAA 361 (515)
T ss_pred cCHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhhc
Confidence 11122345788888899999999999999999999998764
No 41
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.6e-43 Score=333.88 Aligned_cols=307 Identities=22% Similarity=0.258 Sum_probs=276.4
Q ss_pred chhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC-----------------
Q 020071 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY----------------- 75 (331)
Q Consensus 14 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~----------------- 75 (331)
.|.+||||++|++++||++++..|..++.+++.+| +|||||+|+|||++|+.+++.++|...
T Consensus 5 ~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 5 VLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIA 84 (585)
T ss_pred HHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHh
Confidence 48899999999999999999999999999999999 699999999999999999999987532
Q ss_pred ---CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCC
Q 020071 76 ---REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSS 152 (331)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~ 152 (331)
+.++++++.....++++++++++.....++ +++++||||||+|.|+.+.++.|++++|+|+.+++||+++++..
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~---~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~ 161 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPA---LARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVH 161 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcc---cCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChh
Confidence 134667777666788899998887777665 67899999999999999999999999999999999999999999
Q ss_pred CCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhh-CCCccchhhhhhh
Q 020071 153 KIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS-GFRFVNQENVFKV 231 (331)
Q Consensus 153 ~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~-~~~~i~~~~v~~~ 231 (331)
++.++++|||..+.|.+++..++..++.++++++|+.+++++++.|++.++||+|.+++.++++.. ..+.|+.+++.++
T Consensus 162 kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y~~~~It~e~V~~l 241 (585)
T PRK14950 162 KVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQSL 241 (585)
T ss_pred hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998753 4567999999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----c----------------------
Q 020071 232 CDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-----E---------------------- 284 (331)
Q Consensus 232 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~-----~---------------------- 284 (331)
++....+.++++++++..+|..+++.++.+|...|.++..++..+.++++.+ +
T Consensus 242 l~~s~~~~vf~Lidal~~~d~~~al~~l~~L~~~g~~~~~il~~L~~~lR~Ll~lk~g~~~~~l~i~p~~~~~~~~qa~~ 321 (585)
T PRK14950 242 LGISGDEEVKALAEALLAKDLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLLNSGADRSLLDLTADEKAALQKVSQI 321 (585)
T ss_pred hcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999998877755442 1
Q ss_pred cChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 020071 285 MAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSI 323 (331)
Q Consensus 285 ~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~ 323 (331)
++...+.+++..+.+++++++++.++++.+|.++++++.
T Consensus 322 ~s~~~L~~~l~~l~~~D~~lK~~~~~~l~lE~~l~~~~~ 360 (585)
T PRK14950 322 ANLEALTKWVKAFSQLDFQLRTTSYGQLPLELAVIEALL 360 (585)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhc
Confidence 233344688999999999999998889999999999884
No 42
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.9e-40 Score=282.75 Aligned_cols=268 Identities=25% Similarity=0.328 Sum_probs=229.2
Q ss_pred CchhhhcCCCCCCccccCHHHHH---HHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCC
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVA---RLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRG 89 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~---~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 89 (331)
.|++++.||+++++++||++.+. .|.++++.+.+++++||||||+||||+|+.+++.. +..|..+++... +
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~-----~~~f~~~sAv~~-g 85 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT-----NAAFEALSAVTS-G 85 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh-----CCceEEeccccc-c
Confidence 59999999999999999999994 79999999999999999999999999999999998 778999998775 8
Q ss_pred hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEee--CCCCCCChhhhcccceeee
Q 020071 90 IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALAC--NVSSKIIEPIQSRCAIVRF 167 (331)
Q Consensus 90 ~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~--~~~~~l~~~l~sr~~~i~~ 167 (331)
+.++++.++.+..... .+++.|+||||+|++++..|+.|+..+|+ ..+.+|.+| |....+.++|+|||+++.|
T Consensus 86 vkdlr~i~e~a~~~~~---~gr~tiLflDEIHRfnK~QQD~lLp~vE~--G~iilIGATTENPsF~ln~ALlSR~~vf~l 160 (436)
T COG2256 86 VKDLREIIEEARKNRL---LGRRTILFLDEIHRFNKAQQDALLPHVEN--GTIILIGATTENPSFELNPALLSRARVFEL 160 (436)
T ss_pred HHHHHHHHHHHHHHHh---cCCceEEEEehhhhcChhhhhhhhhhhcC--CeEEEEeccCCCCCeeecHHHhhhhheeee
Confidence 8899999998876654 57789999999999999999999999996 345555554 3346899999999999999
Q ss_pred cCCCHHHHHHHHHHHHH--hcCCC-----CCHHHHHHHHHhcCCCHHHHHHHHHHHhh---CCCccchhhhhhhcCC---
Q 020071 168 SRLSDEEILSRLMVVVQ--EEKVP-----YVPEGLEAIIFTADGDMRQALNNLQATYS---GFRFVNQENVFKVCDQ--- 234 (331)
Q Consensus 168 ~~~~~~~~~~~l~~~~~--~~~~~-----i~~~~~~~l~~~~~g~~r~~~~~l~~~~~---~~~~i~~~~v~~~~~~--- 234 (331)
+|++.+++...+.+.+. ..++. +++++.+.++..++||.|.++|.|+.++. ....++.+.+.+++..
T Consensus 161 k~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~ 240 (436)
T COG2256 161 KPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSA 240 (436)
T ss_pred ecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhh
Confidence 99999999999998443 34444 78999999999999999999999997752 2223446777666543
Q ss_pred -------CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cccChHhHH
Q 020071 235 -------PHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKN-YEMAEHLKL 291 (331)
Q Consensus 235 -------~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~-~~~~~~~~~ 291 (331)
.+++.+..+.+++.+.|.++|+.|+.+|++.|++|..|.+.+.+++.+ +|+.+.+..
T Consensus 241 ~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP~Al 305 (436)
T COG2256 241 RFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGLADPNAL 305 (436)
T ss_pred ccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCChhHH
Confidence 566788999999999999999999999999999999999999998876 666444443
No 43
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=6.8e-39 Score=262.46 Aligned_cols=313 Identities=31% Similarity=0.454 Sum_probs=258.4
Q ss_pred chhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCC------------------
Q 020071 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY------------------ 75 (331)
Q Consensus 14 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~------------------ 75 (331)
.|.++|||++++.++++++....|+.....+.+||++||||+|.||.|.+.++.+++.+.+.
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kkl 81 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKL 81 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceE
Confidence 59999999999999999999999999999999999999999999999999999999987321
Q ss_pred ------CCceEEeecCCCCChH--hHHHHHHHHHhcccCC--CCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEE
Q 020071 76 ------REAVMELNASDDRGID--VVRNKIKMFAQKKVTL--PPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFA 145 (331)
Q Consensus 76 ------~~~~~~~~~~~~~~~~--~i~~~i~~~~~~~~~~--~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I 145 (331)
...++++++++....+ .+.+++++.++...-. .....++|+|.|+|.|+.++|.+|.++||.+..++++|
T Consensus 82 EistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlI 161 (351)
T KOG2035|consen 82 EISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLI 161 (351)
T ss_pred EEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEE
Confidence 1245677777764333 5777887777654321 13367999999999999999999999999999999999
Q ss_pred EeeCCCCCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCCccch
Q 020071 146 LACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQ 225 (331)
Q Consensus 146 ~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~ 225 (331)
++||..+++.++|+|||..++++.|+++|+...+...++++|+.++.+.+..+++.++||+|+++-.++.+.-+....+.
T Consensus 162 l~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a 241 (351)
T KOG2035|consen 162 LVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTA 241 (351)
T ss_pred EEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987533332222
Q ss_pred hhhhhhcCCCCHHHHHHHHHHHHcCC----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccChHhHHHHHHHHHHHH
Q 020071 226 ENVFKVCDQPHPLHVKNMVRNVLEGK----FDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAH 301 (331)
Q Consensus 226 ~~v~~~~~~~~~~~i~~l~~~~~~~~----~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (331)
.. ..+.....+..+.++.+.+...+ .-+.+..+++|+..+.+|.-|+..+.+..-. +.+......+++....++
T Consensus 242 ~~-~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL~~CIPP~~Ilk~Ll~~Ll~-~~d~~~k~~~~~~Aa~yE 319 (351)
T KOG2035|consen 242 NS-QVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELLSHCIPPNTILKELLEELLL-KCDTQLKLEVIQHAAKYE 319 (351)
T ss_pred cC-CCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHh-cCCchhHHHHHHHHHHHH
Confidence 21 11222223334455555554332 4567778889999999999999777553322 367788899999999999
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHhhh
Q 020071 302 MRICDGVGSYLQLCGLLAKLSIVRETA 328 (331)
Q Consensus 302 ~~l~~~~~~~l~l~~l~~~l~~~~~~~ 328 (331)
.|+..|.....|||.|+.+++.+++..
T Consensus 320 hRl~lG~KaIfHLEaFVA~fM~iy~~~ 346 (351)
T KOG2035|consen 320 HRLRLGQKAIFHLEAFVAKFMCIYKKF 346 (351)
T ss_pred HHHhhcchhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999998754
No 44
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=100.00 E-value=1.8e-36 Score=269.50 Aligned_cols=300 Identities=26% Similarity=0.378 Sum_probs=248.4
Q ss_pred CCCCCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeE-EEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC
Q 020071 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNL-ILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD 87 (331)
Q Consensus 9 ~~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~-ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (331)
.+...+|.+||||++|++++||++....+..+++++..||+ +|+||+|+|||++++++++.+ +.++..+++.+.
T Consensus 5 ~~~~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~-----~~~~~~i~~~~~ 79 (316)
T PHA02544 5 NPNEFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV-----GAEVLFVNGSDC 79 (316)
T ss_pred CCCCCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh-----CccceEeccCcc
Confidence 45678999999999999999999999999999999999995 669999999999999999987 456778888773
Q ss_pred CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCC-CHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccceee
Q 020071 88 RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM-TAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVR 166 (331)
Q Consensus 88 ~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l-~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~~i~ 166 (331)
..+.+++.+..+..... ..+++++|||||+|.+ ..+.++.|..++++++.+++||++++...++.+++++||..+.
T Consensus 80 -~~~~i~~~l~~~~~~~~--~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~ 156 (316)
T PHA02544 80 -RIDFVRNRLTRFASTVS--LTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVID 156 (316)
T ss_pred -cHHHHHHHHHHHHHhhc--ccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEE
Confidence 35666665555443321 1356899999999999 6777888999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHH-------HHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCCccchhhhhhhcCCCCHHH
Q 020071 167 FSRLSDEEILSRLM-------VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLH 239 (331)
Q Consensus 167 ~~~~~~~~~~~~l~-------~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~ 239 (331)
|++|+.++...++. .++.++|+.++++++..+++.+.||.|.+++.++.... .+.++.+++..+. ...
T Consensus 157 ~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~~-~~~i~~~~l~~~~----~~~ 231 (316)
T PHA02544 157 FGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYAS-TGKIDAGILSEVT----NSD 231 (316)
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHc-cCCCCHHHHHHhh----HHH
Confidence 99999888765543 34556799999999999999999999999999997754 3568887777644 467
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 020071 240 VKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319 (331)
Q Consensus 240 i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~ 319 (331)
++++++++...+..+... ... ..+.++.+++..+++.+... +.+..+.++++.+.+++..+..+.|+.++++.++.
T Consensus 232 ~~~l~~~l~~~d~~~~~~-~~~--~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~l~le~~l~ 307 (316)
T PHA02544 232 IDDVVEALKAKDFKAVRA-LAP--NYANDYASFVGKLYDELYPQ-VTPPSIIRLIEIIGENNQYHGFAADQEIHLLYLLT 307 (316)
T ss_pred HHHHHHHHHcCCHHHHHH-HHH--HhccCHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 888999998888877666 323 23678888888876655442 46778889999999999999999999999999999
Q ss_pred HHHHHH
Q 020071 320 KLSIVR 325 (331)
Q Consensus 320 ~l~~~~ 325 (331)
+++.-.
T Consensus 308 ~~~~~~ 313 (316)
T PHA02544 308 QLMLEC 313 (316)
T ss_pred HHHHhc
Confidence 998543
No 45
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=100.00 E-value=6.1e-38 Score=262.27 Aligned_cols=320 Identities=31% Similarity=0.430 Sum_probs=281.7
Q ss_pred CCCCCCCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCC-CCCCceEEeecC
Q 020071 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP-NYREAVMELNAS 85 (331)
Q Consensus 7 ~~~~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~-~~~~~~~~~~~~ 85 (331)
.+..+.+||.++|||.+++++++|++.+..+.+....++.||+|||||||+|||+...+.+..+.|. +...-+.++|.+
T Consensus 23 ~~~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaS 102 (360)
T KOG0990|consen 23 QSPQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNAS 102 (360)
T ss_pred CCcccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhcc
Confidence 3466788999999999999999999999999999999999999999999999999999999999884 344446789999
Q ss_pred CCCChHhHHHHHHHHHhccc--CCCC-CCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhccc
Q 020071 86 DDRGIDVVRNKIKMFAQKKV--TLPP-GKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRC 162 (331)
Q Consensus 86 ~~~~~~~i~~~i~~~~~~~~--~~~~-~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~ 162 (331)
+.++++.+++.+..+..... .++. ...++||+||+|.++.++||+|.+.++.+..+++|++++|.+.++.+.++|||
T Consensus 103 d~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n~~~ki~pa~qsRc 182 (360)
T KOG0990|consen 103 DDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISNPPQKIHPAQQSRC 182 (360)
T ss_pred CccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhccceEEEEeccChhhcCchhhccc
Confidence 99999988888877765442 1111 36899999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCCc-----cchhhhhhhcCCCCH
Q 020071 163 AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRF-----VNQENVFKVCDQPHP 237 (331)
Q Consensus 163 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~-----i~~~~v~~~~~~~~~ 237 (331)
..++|.|++..+....+..++..+....+++....+++.+.||.|.++|.|+........ ++.+.++...+....
T Consensus 183 trfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~~~~e~~~~~~~vy~c~g~p~~ 262 (360)
T KOG0990|consen 183 TRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKVMERKELNNPNDLVYQCKGAPQP 262 (360)
T ss_pred ccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCCCCchhhHHHhcCCCCh
Confidence 999999999999999999999999999999999999999999999999999987533333 455559999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcccChHhHHHHHHHHHHHHHHHhcCCCchHHHHH
Q 020071 238 LHVKNMVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCG 316 (331)
Q Consensus 238 ~~i~~l~~~~~~~~~~~~~~~l~~l~-~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~ 316 (331)
..+..+++.+.++++.++..-+.++. ..|.+..+++..+......+.++......++..++..++++..|++..+++..
T Consensus 263 ~dI~~I~~~il~~~~~~~~~~is~lk~~~gla~~d~i~~l~~~~~~~~~~~~~~~~I~~~l~~Ie~~ls~g~~~~~ql~a 342 (360)
T KOG0990|consen 263 SDIRQIIEKRMNGEDIELMLDDSELKKPKGLARQDRRAELEQRFAIVISKTPVEGHILYQLADIEERLSKGCMQKEQLKA 342 (360)
T ss_pred hHHHHHHHHHhcCchHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHhHHHHHHHHhcchhHHHHHHH
Confidence 99999999999999888777777764 67788899998888877777777788899999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 020071 317 LLAKLSIVRE 326 (331)
Q Consensus 317 l~~~l~~~~~ 326 (331)
++..+..-++
T Consensus 343 ii~~~~~~~~ 352 (360)
T KOG0990|consen 343 IIKNFAAELK 352 (360)
T ss_pred HHHHHHHHHH
Confidence 9998875443
No 46
>PRK04132 replication factor C small subunit; Provisional
Probab=100.00 E-value=2.4e-36 Score=289.89 Aligned_cols=274 Identities=43% Similarity=0.677 Sum_probs=251.3
Q ss_pred EEeC--CCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHH
Q 020071 50 ILAG--PPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGA 127 (331)
Q Consensus 50 ll~G--~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~ 127 (331)
+..| |.+.||||+|+++++.+.+++++.+++++|+++..+++.+++.++.+...... ...+++|+||||+|.|+.++
T Consensus 568 ~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~-~~~~~KVvIIDEaD~Lt~~A 646 (846)
T PRK04132 568 FIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPI-GGASFKIIFLDEADALTQDA 646 (846)
T ss_pred hhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCc-CCCCCEEEEEECcccCCHHH
Confidence 5556 67779999999999999888788899999999988999999999887754321 12357999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHH
Q 020071 128 QQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMR 207 (331)
Q Consensus 128 ~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r 207 (331)
|++|+++||+|+.+++||++||++++++++|+|||+.+.|+|++.+++...|..++.++|+.++++++..++..++||+|
T Consensus 647 QnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR 726 (846)
T PRK04132 647 QQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMR 726 (846)
T ss_pred HHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCccchhhhhhhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcccC
Q 020071 208 QALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMA 286 (331)
Q Consensus 208 ~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~-~~g~~~~~i~~~l~~~~~~~~~~ 286 (331)
.+++.|+.++.....||.+.+..+.+....+.+++++..+..++..+++..+++++ ..|.++.+++..+++.+....++
T Consensus 727 ~AIn~Lq~~~~~~~~It~~~V~~~~~~~~~~~I~~il~~~l~~~~~~ar~~l~ell~~~G~~~~~iL~~l~~~l~~~~i~ 806 (846)
T PRK04132 727 RAINILQAAAALDDKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHREVFNLPID 806 (846)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHhCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC
Confidence 99999998876667899999999999999999999999999999999999999987 79999999999999988776678
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 020071 287 EHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324 (331)
Q Consensus 287 ~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~ 324 (331)
+..+.+++..++++++++..|+++.++|+.|+.+++.+
T Consensus 807 ~~~k~~ll~~lae~e~rl~~G~n~~iqL~a~la~~~~~ 844 (846)
T PRK04132 807 EPKKVELADKIGEYNFRLVEGANEMIQLEALLAQFTLM 844 (846)
T ss_pred HHHHHHHHHHHHHHhHHHHCCCCHHHHHHHHHHHHHhh
Confidence 88899999999999999999999999999999999743
No 47
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=5.7e-36 Score=264.96 Aligned_cols=280 Identities=20% Similarity=0.269 Sum_probs=231.1
Q ss_pred CCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC---CCceEEeec--CCCCChHhHHH
Q 020071 22 TKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY---REAVMELNA--SDDRGIDVVRN 95 (331)
Q Consensus 22 ~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~---~~~~~~~~~--~~~~~~~~i~~ 95 (331)
|+|++++||+++++.+.+.+++++.+| ++|+||+|+|||++|+.+++.+.|... ..++..+.+ ....+++++++
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~ 80 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRN 80 (313)
T ss_pred CChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHH
Confidence 579999999999999999999999999 699999999999999999999998642 334555544 23457789999
Q ss_pred HHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccceeeecCCCHHHH
Q 020071 96 KIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEI 175 (331)
Q Consensus 96 ~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~ 175 (331)
.+..+...|+ .++++|+|||++|.++.+++|+|++++|+||+++.||++|+++++++++|+|||+.+.|.+++++++
T Consensus 81 ~~~~~~~~p~---~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~ 157 (313)
T PRK05564 81 IIEEVNKKPY---EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEI 157 (313)
T ss_pred HHHHHhcCcc---cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHH
Confidence 9888877776 7889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCCccchhhhhhhcCCCCHHHHHHHHHHHHcCCHHHH
Q 020071 176 LSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDA 255 (331)
Q Consensus 176 ~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~ 255 (331)
..|+.+... .++++.++.++.+++|+++.+...+.... .... .+.++++++.+..++...+
T Consensus 158 ~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~~~~~-------~~~~--------~~~~~~~~~~l~~~~~~~~ 218 (313)
T PRK05564 158 EKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFIEDDS-------LKNI--------RNMSLEILKDIKKSNINIL 218 (313)
T ss_pred HHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHhcccH-------HHHH--------HHHHHHHHHHHHcCCHHHH
Confidence 999987542 47888899999999999998877653311 0111 2356777777777777777
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhc------c--------------------cChHhHHHHHHHHHHHHHHHhcCCC
Q 020071 256 CSGLKQLYDLGYSPTDIITTLFRIIKNY------E--------------------MAEHLKLEFMKEAGFAHMRICDGVG 309 (331)
Q Consensus 256 ~~~l~~l~~~g~~~~~i~~~l~~~~~~~------~--------------------~~~~~~~~~~~~l~~~~~~l~~~~~ 309 (331)
+.++..+...+.++..++..+.++++.+ + ++...+.++++.+.++++.+++|+|
T Consensus 219 l~~~~~l~~~~~~~~~~l~~l~~~~rdll~~k~~~~~~~~~~~~~~~~i~~~a~~~s~~~L~~~~~~l~~~~~~l~~n~n 298 (313)
T PRK05564 219 LKYENFLIKYKENWEEILTCILSYIRDSLLYKETGNEELIINIDKIEDIKHISEKFSYKKLNKMIEIINDTRDNLSSNVN 298 (313)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhccCchhhhcChhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8888777777777777776665544431 0 2333456789999999999999999
Q ss_pred chHHHHHHHHHHHH
Q 020071 310 SYLQLCGLLAKLSI 323 (331)
Q Consensus 310 ~~l~l~~l~~~l~~ 323 (331)
+.+++|.+++++.+
T Consensus 299 ~~l~le~lll~~~~ 312 (313)
T PRK05564 299 PTLVFDSMLIKMQE 312 (313)
T ss_pred ccHHHHHHHHhhhc
Confidence 99999999999864
No 48
>PRK13342 recombination factor protein RarA; Reviewed
Probab=100.00 E-value=2e-35 Score=270.46 Aligned_cols=263 Identities=25% Similarity=0.345 Sum_probs=220.6
Q ss_pred chhhhcCCCCCCccccCHHHHHH---HHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCCh
Q 020071 14 PWVEKYRPTKVCDIVGNLDAVAR---LGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGI 90 (331)
Q Consensus 14 ~~~~~~~p~~~~~~ig~~~~~~~---l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 90 (331)
||+++|||.+|++++||++.+.. +.+++.++..++++|+||+|+|||++|+.+++.+ +..++.+++... +.
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~-----~~~~~~l~a~~~-~~ 74 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT-----DAPFEALSAVTS-GV 74 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEecccc-cH
Confidence 89999999999999999999776 9999999998889999999999999999999988 567888887654 66
Q ss_pred HhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCC--CCCCChhhhcccceeeec
Q 020071 91 DVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNV--SSKIIEPIQSRCAIVRFS 168 (331)
Q Consensus 91 ~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~--~~~l~~~l~sr~~~i~~~ 168 (331)
+.+++.++.+..... .+++.++||||+|.++...++.|++.+++ ..+.+|.+++. ...+.++++|||.++.|.
T Consensus 75 ~~ir~ii~~~~~~~~---~g~~~vL~IDEi~~l~~~~q~~LL~~le~--~~iilI~att~n~~~~l~~aL~SR~~~~~~~ 149 (413)
T PRK13342 75 KDLREVIEEARQRRS---AGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTENPSFEVNPALLSRAQVFELK 149 (413)
T ss_pred HHHHHHHHHHHHhhh---cCCceEEEEechhhhCHHHHHHHHHHhhc--CcEEEEEeCCCChhhhccHHHhccceeeEeC
Confidence 677777766654332 45688999999999999999999999986 34555555432 357889999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc--CC-CCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCCccchhhhhhhcCCC----------
Q 020071 169 RLSDEEILSRLMVVVQEE--KV-PYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQP---------- 235 (331)
Q Consensus 169 ~~~~~~~~~~l~~~~~~~--~~-~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~---------- 235 (331)
|++.+++..++.+.+... ++ .+++++++.+++.++||+|.+++.++.+......|+.+++.+++...
T Consensus 150 ~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~ 229 (413)
T PRK13342 150 PLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDE 229 (413)
T ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccH
Confidence 999999999999987653 44 78999999999999999999999999876556679999998877642
Q ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cccCh
Q 020071 236 HPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKN-YEMAE 287 (331)
Q Consensus 236 ~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~-~~~~~ 287 (331)
..+.+..+.+++.+.|.+.++.|+..|+..|+++..|.+.+...+.+ +|+.+
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~ 282 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLAD 282 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccC
Confidence 34556677788888999999999999999999999999998886643 45433
No 49
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=100.00 E-value=1.4e-34 Score=276.81 Aligned_cols=271 Identities=23% Similarity=0.298 Sum_probs=219.6
Q ss_pred CCCCchhhhcCCCCCCccccCHHHHH---HHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCC
Q 020071 10 AYDIPWVEKYRPTKVCDIVGNLDAVA---RLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASD 86 (331)
Q Consensus 10 ~~~~~~~~~~~p~~~~~~ig~~~~~~---~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (331)
..+.||.++|||.+|++++||++.+. .+.+.+..+..+|++||||||+|||++|+.+++.. ...++.+++..
T Consensus 13 ~~~~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~-----~~~f~~lna~~ 87 (725)
T PRK13341 13 QSEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT-----RAHFSSLNAVL 87 (725)
T ss_pred cccCChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh-----cCcceeehhhh
Confidence 34569999999999999999999994 78899999999999999999999999999999987 45567777654
Q ss_pred CCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCC--CCCCChhhhcccce
Q 020071 87 DRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNV--SSKIIEPIQSRCAI 164 (331)
Q Consensus 87 ~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~--~~~l~~~l~sr~~~ 164 (331)
. +...+++.+........ ..+.+.++||||+|.++...+++|+..+++ ..+.+|.+++. ...+.+++.|||.+
T Consensus 88 ~-~i~dir~~i~~a~~~l~--~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~--g~IiLI~aTTenp~~~l~~aL~SR~~v 162 (725)
T PRK13341 88 A-GVKDLRAEVDRAKERLE--RHGKRTILFIDEVHRFNKAQQDALLPWVEN--GTITLIGATTENPYFEVNKALVSRSRL 162 (725)
T ss_pred h-hhHHHHHHHHHHHHHhh--hcCCceEEEEeChhhCCHHHHHHHHHHhcC--ceEEEEEecCCChHhhhhhHhhccccc
Confidence 3 44555665554432211 024578999999999999999999999986 33445554432 35788999999999
Q ss_pred eeecCCCHHHHHHHHHHHHH-------hcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhC---C----Cccchhhhhh
Q 020071 165 VRFSRLSDEEILSRLMVVVQ-------EEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSG---F----RFVNQENVFK 230 (331)
Q Consensus 165 i~~~~~~~~~~~~~l~~~~~-------~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~---~----~~i~~~~v~~ 230 (331)
+.|+|++.+++..++++.+. .+++.+++++++.|++.++||+|.+++.|+.+... . ..||.+.+.+
T Consensus 163 ~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e 242 (725)
T PRK13341 163 FRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGLIDITLAIAEE 242 (725)
T ss_pred eecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHH
Confidence 99999999999999999887 45788999999999999999999999999976421 1 1266666655
Q ss_pred hc----------CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cccChHhH
Q 020071 231 VC----------DQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKN-YEMAEHLK 290 (331)
Q Consensus 231 ~~----------~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~-~~~~~~~~ 290 (331)
.+ +..+++.+..+++++.++|.++|+.++.+|+..|++|..|.+.|.+.+.+ +|+.+...
T Consensus 243 ~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~a 313 (725)
T PRK13341 243 SIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQA 313 (725)
T ss_pred HHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHH
Confidence 43 34678999999999999999999999999999999999999999998874 56644333
No 50
>PRK04195 replication factor C large subunit; Provisional
Probab=100.00 E-value=4.4e-34 Score=266.35 Aligned_cols=295 Identities=27% Similarity=0.375 Sum_probs=235.5
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcC---C-CCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDG---N-MPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR 88 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~---~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (331)
++|.+||||++|++++|++..+..+..++... . .+++||+||||+|||++|+++++.+ +..++++|+++..
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~~ielnasd~r 76 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWEVIELNASDQR 76 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCCEEEEcccccc
Confidence 58999999999999999999999999998753 3 3458999999999999999999998 6789999998877
Q ss_pred ChHhHHHHHHHHHhcccCCCCC-CceEEEEeCCCCCCH----HHHHHHHHHHHHhcCCcEEEEeeCCCCCCCh-hhhccc
Q 020071 89 GIDVVRNKIKMFAQKKVTLPPG-KHKVVVLDEADSMTA----GAQQALRRTMEIYSNSTRFALACNVSSKIIE-PIQSRC 162 (331)
Q Consensus 89 ~~~~i~~~i~~~~~~~~~~~~~-~~~vviide~d~l~~----~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~-~l~sr~ 162 (331)
..+.+...+......... .+ ++++|||||+|.++. ...++|+++++. ..+.+|++||+...+.+ ++++||
T Consensus 77 ~~~~i~~~i~~~~~~~sl--~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~ 152 (482)
T PRK04195 77 TADVIERVAGEAATSGSL--FGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNAC 152 (482)
T ss_pred cHHHHHHHHHHhhccCcc--cCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccc
Confidence 777777777665544321 33 689999999999976 568899999985 45678899999887776 899999
Q ss_pred ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCCccchhhhhhhcCCCCHHHHHH
Q 020071 163 AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKN 242 (331)
Q Consensus 163 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~ 242 (331)
..+.|++++..++..++..++..+++.+++++++.|++.++||+|.+++.|+.++.+.+.++.+++..+........+|+
T Consensus 153 ~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~~d~~~~if~ 232 (482)
T PRK04195 153 LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGRRDREESIFD 232 (482)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhcCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999877778899999998887777889999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccChHhHHHHHHHHHHHHH---HHhcCCCchHHHHHHH
Q 020071 243 MVRNVLE-GKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHM---RICDGVGSYLQLCGLL 318 (331)
Q Consensus 243 l~~~~~~-~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~---~l~~~~~~~l~l~~l~ 318 (331)
+++.++. ++...++..+.. ...++..++..+..-.-..-.....+.+++..+..++. ++..+.+ .+|..+.
T Consensus 233 ~l~~i~~~k~~~~a~~~~~~---~~~~~~~i~~~l~en~~~~~~~~~~~~~a~~~ls~ad~~~~~~~~~~~--~~l~~~~ 307 (482)
T PRK04195 233 ALDAVFKARNADQALEASYD---VDEDPDDLIEWIDENIPKEYDDPEDIARAYDALSRADIFLGRVKRTQN--YDLWRYA 307 (482)
T ss_pred HHHHHHCCCCHHHHHHHHHc---ccCCHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHHHHHhcCC--cchHHHH
Confidence 9999987 678777765543 45677777666654222210123455566666655554 4444444 4555554
Q ss_pred HHH
Q 020071 319 AKL 321 (331)
Q Consensus 319 ~~l 321 (331)
..+
T Consensus 308 ~~~ 310 (482)
T PRK04195 308 SDL 310 (482)
T ss_pred HHH
Confidence 444
No 51
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=7.5e-34 Score=250.62 Aligned_cols=282 Identities=19% Similarity=0.212 Sum_probs=212.3
Q ss_pred HHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC-------------------CCceEEeecC---CCCC
Q 020071 33 AVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY-------------------REAVMELNAS---DDRG 89 (331)
Q Consensus 33 ~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~-------------------~~~~~~~~~~---~~~~ 89 (331)
.++.+.+.+.+++++| +||+||+|+||+++|.++++.+.|... +.++..+.+. ..++
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~ 89 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLG 89 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCC
Confidence 8999999999999999 799999999999999999999998521 2345555443 3478
Q ss_pred hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccceeeecC
Q 020071 90 IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSR 169 (331)
Q Consensus 90 ~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~~i~~~~ 169 (331)
++++++..+.+...+. .+++||+|||++|.|+.+++|+|+|+|||||+++.||++|++++++++||+|||+.+.|+|
T Consensus 90 idqiR~l~~~~~~~~~---~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~ 166 (334)
T PRK07993 90 VDAVREVTEKLYEHAR---LGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAP 166 (334)
T ss_pred HHHHHHHHHHHhhccc---cCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCC
Confidence 9999999999888886 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhh-CCCccchhhhhhhcCCCCHHHHHHHHHHHH
Q 020071 170 LSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS-GFRFVNQENVFKVCDQPHPLHVKNMVRNVL 248 (331)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~-~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~ 248 (331)
++.+++..||.+. ..++++.+..++..++|+++.+++.++.... ....+ .+.+....... ....++..+.
T Consensus 167 ~~~~~~~~~L~~~-----~~~~~~~a~~~~~la~G~~~~Al~l~~~~~~~~r~~~-~~~l~~~~~~~---~~~~~~~~~~ 237 (334)
T PRK07993 167 PPEQYALTWLSRE-----VTMSQDALLAALRLSAGAPGAALALLQPERWQQREAL-CQALAYALPSG---DWLSLLPALN 237 (334)
T ss_pred CCHHHHHHHHHHc-----cCCCHHHHHHHHHHcCCCHHHHHHHhcCchHHHHHHH-HHHHHHHhcCC---CHHHHHHHHc
Confidence 9999999999752 2467777888999999999999988753110 00000 01111111111 2223333333
Q ss_pred cCCHHHHH----HHHHHHH--HcCCCH---HHHHHHHHHHHHhcccChHhHHHHHHHHHHHHHHHhc--CCCchHHHHHH
Q 020071 249 EGKFDDAC----SGLKQLY--DLGYSP---TDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICD--GVGSYLQLCGL 317 (331)
Q Consensus 249 ~~~~~~~~----~~l~~l~--~~g~~~---~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~~~~l~l~~l 317 (331)
+.+....+ .++++++ ..|... .+....+..++.. ++...+..+++.+.++.+++.+ |+|++++++.+
T Consensus 238 ~~~~~~~L~~l~~~~rD~l~~~~~~~~~~n~d~~~~i~~~a~~--~~~~~l~~~~~~l~~~~~~l~~~~N~N~~L~le~l 315 (334)
T PRK07993 238 HEQAPARLHWLATLLMDALKRQHGAAYVTNQDQPPLVAQLANH--LSPARLQAILGDVCHCREQLLSVTGVNRELLLTDL 315 (334)
T ss_pred ccCHHHHHHHHHHHHHHHHHHhcCCcceeCHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 33444434 3444543 333211 1112222233333 6778888999999999999995 99999999999
Q ss_pred HHHHHHHHhhh
Q 020071 318 LAKLSIVRETA 328 (331)
Q Consensus 318 ~~~l~~~~~~~ 328 (331)
++++.+++...
T Consensus 316 ll~~~~~~~~~ 326 (334)
T PRK07993 316 LLRIEHYLQPG 326 (334)
T ss_pred HHHHHHHHccc
Confidence 99999887654
No 52
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=1.8e-33 Score=246.36 Aligned_cols=271 Identities=20% Similarity=0.259 Sum_probs=203.7
Q ss_pred CCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC-------------CCceEEeecC---
Q 020071 23 KVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY-------------REAVMELNAS--- 85 (331)
Q Consensus 23 ~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~-------------~~~~~~~~~~--- 85 (331)
.|++++||+++++.|.+.+++++++| +||+||+|+||+++|.++++.+.|+.. ..++..+.+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 58899999999999999999999988 799999999999999999999998641 1233333221
Q ss_pred --------------------CCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEE
Q 020071 86 --------------------DDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFA 145 (331)
Q Consensus 86 --------------------~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I 145 (331)
..+++++++++.+.+...++ .++++|+|||++|.|+..++|+|+++||+|| +++||
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~---~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPL---EAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcc---cCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 12456788888888888776 7889999999999999999999999999999 88999
Q ss_pred EeeCCCCCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCCccch
Q 020071 146 LACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQ 225 (331)
Q Consensus 146 ~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~ 225 (331)
++|++++++++||+|||+.+.|+|++.+++.++|.+....++.. .....++..++|+++.+++.++... .+..
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~---~~~~~l~~~a~Gs~~~al~~l~~~~----~~~~ 230 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN---INFPELLALAQGSPGAAIANIEQLQ----SIPP 230 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch---hHHHHHHHHcCCCHHHHHHHHHHHH----HHHH
Confidence 99999999999999999999999999999999999865433221 2246789999999999999886532 1111
Q ss_pred hhhhhhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHhcccChHhHHHHHHHHHHHHH
Q 020071 226 ENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPT---DIITTLFRIIKNYEMAEHLKLEFMKEAGFAHM 302 (331)
Q Consensus 226 ~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~---~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (331)
+ +...+... .++...++.+-..+ ..+.+.. .++..+..++.+ . .....+++.+.++.+
T Consensus 231 ~-------------~~~~~~~~-~~~~~~~~~~a~~~-~~~~~~e~Q~~~l~~~~~~~~~---~-~~~~~~~~~l~~a~~ 291 (314)
T PRK07399 231 E-------------LLQKLEQP-PKSPLEALELAKDI-SEELDIEQQLWLIDYLQQHYWQ---K-TKNRQLLKQLEKLRK 291 (314)
T ss_pred H-------------HHHHHHhc-ccCHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHH---h-hcchHHHHHHHHHHH
Confidence 1 11111211 13444444332222 2122211 122222222222 1 125788999999999
Q ss_pred HHhcCCCchHHHHHHHHHHHH
Q 020071 303 RICDGVGSYLQLCGLLAKLSI 323 (331)
Q Consensus 303 ~l~~~~~~~l~l~~l~~~l~~ 323 (331)
.+.+|+|++++++.++++++.
T Consensus 292 ~l~~nvn~~lv~e~~~l~l~~ 312 (314)
T PRK07399 292 QLLSYVQPRLAWEVTLLELSQ 312 (314)
T ss_pred HHHHcCCcchhHHHHHHHHhc
Confidence 999999999999999999975
No 53
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=3.1e-33 Score=251.17 Aligned_cols=293 Identities=20% Similarity=0.261 Sum_probs=215.6
Q ss_pred CCCccccCHHHHHHHHHHHHcCC---------CCe-EEEeCCCCccHHHHHHHHHHHhcCCCC-----------------
Q 020071 23 KVCDIVGNLDAVARLGIIARDGN---------MPN-LILAGPPGTGKTTSILALAHELLGPNY----------------- 75 (331)
Q Consensus 23 ~~~~~ig~~~~~~~l~~~l~~~~---------~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~----------------- 75 (331)
.|++++||+++++.|++++..+. .+| +||+||+|+|||++|+.+++.++|+..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 58899999999999999999987 888 899999999999999999999998631
Q ss_pred -CCceEEeecC-CCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCC
Q 020071 76 -REAVMELNAS-DDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSK 153 (331)
Q Consensus 76 -~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~ 153 (331)
+.++..+.+. ...+++++++.++.+...+. .++++|+||||+|.|+..++|+|+++||+|++++.||++|+++..
T Consensus 83 ~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~---~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~ 159 (394)
T PRK07940 83 THPDVRVVAPEGLSIGVDEVRELVTIAARRPS---TGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPED 159 (394)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHHhCcc---cCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHH
Confidence 1233333332 33678899999888877775 678999999999999999999999999999999999999999999
Q ss_pred CChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh--hCCCcc--------
Q 020071 154 IIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY--SGFRFV-------- 223 (331)
Q Consensus 154 l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~--~~~~~i-------- 223 (331)
++++|+|||+.+.|+||+.+++..|+.+. . .++++.+..++..++|+++.++..++.-. .....+
T Consensus 160 llpTIrSRc~~i~f~~~~~~~i~~~L~~~---~--~~~~~~a~~la~~s~G~~~~A~~l~~~~~~~~~r~~~~~~l~~l~ 234 (394)
T PRK07940 160 VLPTIRSRCRHVALRTPSVEAVAEVLVRR---D--GVDPETARRAARASQGHIGRARRLATDEEARARRAEVLNLALRLA 234 (394)
T ss_pred ChHHHHhhCeEEECCCCCHHHHHHHHHHh---c--CCCHHHHHHHHHHcCCCHHHHHHHhcChHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999742 2 36788899999999999999877753210 000000
Q ss_pred ch---------------hhhhhhcCCCCHHHHHHHHHHH-----------------------H---c--------CCHHH
Q 020071 224 NQ---------------ENVFKVCDQPHPLHVKNMVRNV-----------------------L---E--------GKFDD 254 (331)
Q Consensus 224 ~~---------------~~v~~~~~~~~~~~i~~l~~~~-----------------------~---~--------~~~~~ 254 (331)
.. +.+....+........++...+ . + .....
T Consensus 235 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 314 (394)
T PRK07940 235 RVSDAVAAAEELVKAAEAEAKALTAERDEAETEELRTALGAGGTGKGPAKALRGAAGALKDLEKRQKRRATRASRDALDR 314 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHhccccccccccccchhHHHHHHHHHHHHhhhchhhhhhhHHH
Confidence 00 0111112222222222222221 0 0 01222
Q ss_pred ----HHHHHHHHH--HcCCCH----HHHHHHHHHHHHhcccChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 020071 255 ----ACSGLKQLY--DLGYSP----TDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324 (331)
Q Consensus 255 ----~~~~l~~l~--~~g~~~----~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~ 324 (331)
...|+++++ ..|.+. .+....+.+.+.. ++...+..+++.+.++..++..|+|+++++|.+++++.+.
T Consensus 315 ~l~~l~~~~rDll~~~~g~~~~~~n~d~~~~l~~~a~~--~~~~~l~~~~~~~~~a~~~l~~n~n~~L~lE~lll~l~~~ 392 (394)
T PRK07940 315 ALVDLAGLYRDVLVVQLGAEVGLINPDMADRLAELAAR--STPEGLLRRIDAVLACRERLAGNVKPLLAVEAMVAALRQA 392 (394)
T ss_pred HHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 455666653 333222 2222334444444 5778889999999999999999999999999999999876
Q ss_pred H
Q 020071 325 R 325 (331)
Q Consensus 325 ~ 325 (331)
+
T Consensus 393 ~ 393 (394)
T PRK07940 393 L 393 (394)
T ss_pred c
Confidence 4
No 54
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=100.00 E-value=2e-33 Score=238.68 Aligned_cols=269 Identities=21% Similarity=0.313 Sum_probs=222.7
Q ss_pred CCchhhhcCCCCCCccccCHHHHH---HHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC
Q 020071 12 DIPWVEKYRPTKVCDIVGNLDAVA---RLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR 88 (331)
Q Consensus 12 ~~~~~~~~~p~~~~~~ig~~~~~~---~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (331)
..|++++-||++++|++||++++. .|+..++++++|+++||||||+|||++|+.++...... ...|+++.....
T Consensus 125 h~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~--SyrfvelSAt~a- 201 (554)
T KOG2028|consen 125 HKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKH--SYRFVELSATNA- 201 (554)
T ss_pred cCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCC--ceEEEEEecccc-
Confidence 349999999999999999999986 78999999999999999999999999999999876322 345788877664
Q ss_pred ChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeC--CCCCCChhhhcccceee
Q 020071 89 GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACN--VSSKIIEPIQSRCAIVR 166 (331)
Q Consensus 89 ~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~--~~~~l~~~l~sr~~~i~ 166 (331)
+..+++++++....... ...++.|+||||+|++++..|+.|+...|+ ..+.+|.+|+ ....+..++.|||.++.
T Consensus 202 ~t~dvR~ife~aq~~~~--l~krkTilFiDEiHRFNksQQD~fLP~VE~--G~I~lIGATTENPSFqln~aLlSRC~Vfv 277 (554)
T KOG2028|consen 202 KTNDVRDIFEQAQNEKS--LTKRKTILFIDEIHRFNKSQQDTFLPHVEN--GDITLIGATTENPSFQLNAALLSRCRVFV 277 (554)
T ss_pred chHHHHHHHHHHHHHHh--hhcceeEEEeHHhhhhhhhhhhcccceecc--CceEEEecccCCCccchhHHHHhccceeE
Confidence 66778888876655432 156788999999999999999999999986 4456666543 34689999999999999
Q ss_pred ecCCCHHHHHHHHHHHHH------hc--C-----CCCCHHHHHHHHHhcCCCHHHHHHHHHHHh---------hCCCccc
Q 020071 167 FSRLSDEEILSRLMVVVQ------EE--K-----VPYVPEGLEAIIFTADGDMRQALNNLQATY---------SGFRFVN 224 (331)
Q Consensus 167 ~~~~~~~~~~~~l~~~~~------~~--~-----~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~---------~~~~~i~ 224 (331)
+.+++.+.+..+|.+... +. + ..+++.++++++..+.||.|.++|.|+... .....++
T Consensus 278 LekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g~~~~~~lS 357 (554)
T KOG2028|consen 278 LEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSGQSSRVLLS 357 (554)
T ss_pred eccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCcccceec
Confidence 999999999999988544 11 1 236788999999999999999999998652 1234788
Q ss_pred hhhhhhhcC----------CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cccCh
Q 020071 225 QENVFKVCD----------QPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKN-YEMAE 287 (331)
Q Consensus 225 ~~~v~~~~~----------~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~-~~~~~ 287 (331)
.+++.+.+. ..+++.|..+-+++.++|..+++.||.+|+..|++|..+.+.+.|++.+ +|+.+
T Consensus 358 idDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~nAslY~LaRMLegGEdPLYVARRlvR~ASEDIGlaD 431 (554)
T KOG2028|consen 358 IDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLAD 431 (554)
T ss_pred HHHHHHHHhhccceecccchhHHHHHHHHHHhhcCCccchHHHHHHHHHccCCCcHHHHHHHHHHhhcccCcCC
Confidence 899987653 3567889999999999999999999999999999999999999998876 55433
No 55
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=3.7e-33 Score=247.40 Aligned_cols=288 Identities=19% Similarity=0.194 Sum_probs=208.3
Q ss_pred CCCCcccc-CHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC-------------------CCceE
Q 020071 22 TKVCDIVG-NLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY-------------------REAVM 80 (331)
Q Consensus 22 ~~~~~~ig-~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~-------------------~~~~~ 80 (331)
+.|+.++| |+++++.|.+.+.+|++|| +||+||+|+||+++|+.+++.+.|+.. ..++.
T Consensus 2 ~~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~ 81 (329)
T PRK08058 2 MTWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVH 81 (329)
T ss_pred CcHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEE
Confidence 35788999 9999999999999999999 699999999999999999999998641 12333
Q ss_pred Eeec-CCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhh
Q 020071 81 ELNA-SDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQ 159 (331)
Q Consensus 81 ~~~~-~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~ 159 (331)
.+.. ....+++++++.++.+...++ .++++|+||||+|.++.+++|+|+++||+||+++.||++|+++.+++++|+
T Consensus 82 ~i~~~~~~i~id~ir~l~~~~~~~~~---~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIr 158 (329)
T PRK08058 82 LVAPDGQSIKKDQIRYLKEEFSKSGV---ESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTIL 158 (329)
T ss_pred EeccccccCCHHHHHHHHHHHhhCCc---ccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHH
Confidence 3322 223567899999888877775 788999999999999999999999999999999999999999999999999
Q ss_pred cccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhh-CCCccchhhhhhhcCCCCHH
Q 020071 160 SRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS-GFRFVNQENVFKVCDQPHPL 238 (331)
Q Consensus 160 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~-~~~~i~~~~v~~~~~~~~~~ 238 (331)
|||+.++|.|++.+++..++.+ +| ++++.+..++..+ |+++.+...++.-.. ..... ...+.+.+......
T Consensus 159 SRc~~i~~~~~~~~~~~~~L~~----~g--i~~~~~~~l~~~~-g~~~~A~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~ 230 (329)
T PRK08058 159 SRCQVVEFRPLPPESLIQRLQE----EG--ISESLATLLAGLT-NSVEEALALSEDDWFAQARAL-VIKLYEALHEKDLQ 230 (329)
T ss_pred hhceeeeCCCCCHHHHHHHHHH----cC--CChHHHHHHHHHc-CCHHHHHHHhcCchHHHHHHH-HHHHHHHHHcCCHH
Confidence 9999999999999999888865 34 6677777777665 789999888753211 00000 01111111122222
Q ss_pred HHHHHHHHHH---c-CC-HH----HHHHHHHHHH--HcCCCHH----HHHHHHHHHHHhcccChHhHHHHHHHHHHHHHH
Q 020071 239 HVKNMVRNVL---E-GK-FD----DACSGLKQLY--DLGYSPT----DIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMR 303 (331)
Q Consensus 239 ~i~~l~~~~~---~-~~-~~----~~~~~l~~l~--~~g~~~~----~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (331)
.+..+.+.+. + ++ .. ....++++++ ..|.+.. +....+..++.. ++...+..+++.+.++..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~d~~~~l~~~a~~--~s~~~l~~~~~~~~~~~~~ 308 (329)
T PRK08058 231 SFVFVQEKWMPLFKEKDQQQLGLDLLLLIYRDLLYLQLGEEDRLVFREQKEMLQQLALS--YSQQQIVAALELILEAKRR 308 (329)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHH
Confidence 2222222221 1 11 11 2334445543 3332221 112223333333 6778889999999999999
Q ss_pred HhcCCCchHHHHHHHHHHH
Q 020071 304 ICDGVGSYLQLCGLLAKLS 322 (331)
Q Consensus 304 l~~~~~~~l~l~~l~~~l~ 322 (331)
+..|+|+++++|.+++++.
T Consensus 309 l~~n~n~~L~le~lll~~~ 327 (329)
T PRK08058 309 LNSNVNFQLVMEQLVLRLQ 327 (329)
T ss_pred HHHcCCHHHHHHHHHHhcc
Confidence 9999999999999999875
No 56
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=3.9e-32 Score=239.11 Aligned_cols=279 Identities=21% Similarity=0.207 Sum_probs=206.7
Q ss_pred HHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC-------------------CCceEEeecC---CCCChHhH
Q 020071 37 LGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY-------------------REAVMELNAS---DDRGIDVV 93 (331)
Q Consensus 37 l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~-------------------~~~~~~~~~~---~~~~~~~i 93 (331)
+.+.+..|+.+| +||+||+|+||+++|+.+++.++|+.. +.++..+.+. ..++++++
T Consensus 12 ~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~i 91 (328)
T PRK05707 12 WQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQV 91 (328)
T ss_pred HHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHH
Confidence 334455699999 899999999999999999999998531 2345555443 34788999
Q ss_pred HHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccceeeecCCCHH
Q 020071 94 RNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDE 173 (331)
Q Consensus 94 ~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~~i~~~~~~~~ 173 (331)
++.++.+...+. .++++|+|||++|.|+.+++|+|+++||+||+++.||++|+++..+++||+|||+.+.|.|++.+
T Consensus 92 R~l~~~~~~~~~---~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~ 168 (328)
T PRK05707 92 RELVSFVVQTAQ---LGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNE 168 (328)
T ss_pred HHHHHHHhhccc---cCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHH
Confidence 999988888876 78899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCCccchhhhhhhcCCCCHHHHHHHHHHHHcCCHH
Q 020071 174 EILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253 (331)
Q Consensus 174 ~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~ 253 (331)
++.+||.+... ..+++.+..++..++|+++.++..++........--.+.+..+.... ..++.+.+...+.+..
T Consensus 169 ~~~~~L~~~~~----~~~~~~~~~~l~la~Gsp~~A~~l~~~~~~~~r~~~~~~l~~~~~~~--~~~~~~~~~~~k~~~~ 242 (328)
T PRK05707 169 ESLQWLQQALP----ESDERERIELLTLAGGSPLRALQLHEQGVREQRARVLDGVKKLLKQQ--QSASQLAESWLKVPLL 242 (328)
T ss_pred HHHHHHHHhcc----cCChHHHHHHHHHcCCCHHHHHHHHCcchHHHHHHHHHHHHHHhcCc--ccHHHHHHHHccCCHH
Confidence 99999986431 24666777889999999999988764311000000011222222211 1334555555444555
Q ss_pred HHHH----HHHHHH--HcCCCH-----HHHHHHHHHHHHhcccChHhHHHHHHHHHHHHHHHh--cCCCchHHHHHHHHH
Q 020071 254 DACS----GLKQLY--DLGYSP-----TDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC--DGVGSYLQLCGLLAK 320 (331)
Q Consensus 254 ~~~~----~l~~l~--~~g~~~-----~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~--~~~~~~l~l~~l~~~ 320 (331)
..+. ++++++ ..|.+. .+....+..++.. ++...+..+++.+.++..++. .|+|.++++|.++++
T Consensus 243 ~~l~~l~~~~~D~l~~~~~~~~~~~~n~d~~~~l~~~a~~--~~~~~L~~~~~~l~~~~~~l~~~~NvN~~L~le~lll~ 320 (328)
T PRK05707 243 LLFDWFCDWAHDILRYQLTQDEEGLGLADMRKVLQYLAQK--SPQAKVLALQDWLLEQRQKVLGKANLNRQLLLEALLVQ 320 (328)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccccCHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence 4444 444443 333222 2333444445555 577788899999999999986 899999999999999
Q ss_pred HHHHHh
Q 020071 321 LSIVRE 326 (331)
Q Consensus 321 l~~~~~ 326 (331)
+.++..
T Consensus 321 ~~~~~~ 326 (328)
T PRK05707 321 WAGLPG 326 (328)
T ss_pred HHHHhc
Confidence 987653
No 57
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=1.7e-31 Score=233.19 Aligned_cols=277 Identities=18% Similarity=0.166 Sum_probs=207.6
Q ss_pred HHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC-------------------CCceEEeec--CCCCCh
Q 020071 33 AVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY-------------------REAVMELNA--SDDRGI 90 (331)
Q Consensus 33 ~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~-------------------~~~~~~~~~--~~~~~~ 90 (331)
.++.+.+.+.+|+++| +||+||+|+||+++|+.+++.+.|+.. +.++..+.+ ...+++
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~i 89 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGV 89 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCH
Confidence 8999999999999999 799999999999999999999999531 234555543 234689
Q ss_pred HhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccceeeecCC
Q 020071 91 DVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRL 170 (331)
Q Consensus 91 ~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~~i~~~~~ 170 (331)
+++++..+.....+. .+++||+|||++|.|+..++|+|+|+|||||+++.||++|++++++++||+|||+.+.|.|+
T Consensus 90 d~iR~l~~~~~~~~~---~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~ 166 (325)
T PRK06871 90 DQVREINEKVSQHAQ---QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPP 166 (325)
T ss_pred HHHHHHHHHHhhccc---cCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCC
Confidence 999999988888876 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-hCCCccchhhhhhhcCCCCHHHHHHHHHHHHc
Q 020071 171 SDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-SGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249 (331)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~ 249 (331)
+.+++.+||.+.. ..++..+..++..++|++..+++.++... ...+.+- ..+....... ...+++..+.+
T Consensus 167 ~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~~~~~~~~r~~~~-~~l~~~~~~~---~~~~~~~~~~k 237 (325)
T PRK06871 167 EEQQALDWLQAQS-----SAEISEILTALRINYGRPLLALTFLEQGLLEQRKTFL-RQFWLFYRRR---SPLELLPLFDK 237 (325)
T ss_pred CHHHHHHHHHHHh-----ccChHHHHHHHHHcCCCHHHHHHHhhCChHHHHHHHH-HHHHHHhccC---CHHHHHHHHhh
Confidence 9999999998753 23455567788899999999988875421 0000000 0011111111 22333333333
Q ss_pred CCHHH----HHHHHHHHH--HcCCC----HHHHHHHHHHHHHhcccChHhHHHHHHHHHHHHHHHh--cCCCchHHHHHH
Q 020071 250 GKFDD----ACSGLKQLY--DLGYS----PTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC--DGVGSYLQLCGL 317 (331)
Q Consensus 250 ~~~~~----~~~~l~~l~--~~g~~----~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~--~~~~~~l~l~~l 317 (331)
.+... ...++++++ ..|.+ ..+....+.+++.+ .+...+..+++.+.++.+++. .|.|..|.|+..
T Consensus 238 ~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~D~~~~i~~~a~~--~s~~~L~~~i~~i~~~r~~L~~~~~iN~~L~l~~~ 315 (325)
T PRK06871 238 ELVLQQLDWLLAFLSDALKAKLDIASGWICQDLQRGILQFSQQ--QSAQGLLKAHQIIQKVRSDLLQINAVNQELILLDG 315 (325)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCCcccccHhHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHcccccCHHHHHHHH
Confidence 33333 345555653 33322 23334444455555 677889999999999999996 777999999999
Q ss_pred HHHHHH
Q 020071 318 LAKLSI 323 (331)
Q Consensus 318 ~~~l~~ 323 (331)
++.+..
T Consensus 316 l~~~~~ 321 (325)
T PRK06871 316 LTRLVT 321 (325)
T ss_pred HHHHHH
Confidence 988764
No 58
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=2.1e-31 Score=234.10 Aligned_cols=273 Identities=19% Similarity=0.179 Sum_probs=202.1
Q ss_pred HHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC--------------------CCceEEeecC------
Q 020071 33 AVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY--------------------REAVMELNAS------ 85 (331)
Q Consensus 33 ~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~--------------------~~~~~~~~~~------ 85 (331)
.++.+... .+++|| +||+||+|+||+++|+.+++.++|+.. +.++..+.+.
T Consensus 9 ~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~ 86 (342)
T PRK06964 9 DWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEA 86 (342)
T ss_pred HHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccc
Confidence 77777775 678999 799999999999999999999999642 1234334221
Q ss_pred -----------------------CCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCc
Q 020071 86 -----------------------DDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNST 142 (331)
Q Consensus 86 -----------------------~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~ 142 (331)
..++++++++..+.....+. .++++|+|||++|.|+.+++|+|+|+||+||+++
T Consensus 87 ~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~---~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t 163 (342)
T PRK06964 87 PGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTH---RGGARVVVLYPAEALNVAAANALLKTLEEPPPGT 163 (342)
T ss_pred cccccccccchhhcccccccccccccCHHHHHHHHHHhccCCc---cCCceEEEEechhhcCHHHHHHHHHHhcCCCcCc
Confidence 23577899998887777665 7889999999999999999999999999999999
Q ss_pred EEEEeeCCCCCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCCc
Q 020071 143 RFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRF 222 (331)
Q Consensus 143 ~~I~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~ 222 (331)
.||++|++++++++||+|||+.+.|+|++.+++.+||.+. + +++. +.++..++|++..++..++.- ...
T Consensus 164 ~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~--~~~~--~~~l~~~~Gsp~~Al~~~~~~---~~~ 232 (342)
T PRK06964 164 VFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----G--VADA--DALLAEAGGAPLAALALASDE---NRP 232 (342)
T ss_pred EEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----C--CChH--HHHHHHcCCCHHHHHHHHCCC---hHH
Confidence 9999999999999999999999999999999999999763 3 3432 335778899999998887431 000
Q ss_pred cchhhhhhhcCCCCHHHHHHHHHHHHcCCHHHHH----HHHHHHH--HcCCCH---HHHHHHHHHHHHhcccChHhHHHH
Q 020071 223 VNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDAC----SGLKQLY--DLGYSP---TDIITTLFRIIKNYEMAEHLKLEF 293 (331)
Q Consensus 223 i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~----~~l~~l~--~~g~~~---~~i~~~l~~~~~~~~~~~~~~~~~ 293 (331)
. .+.+...+.......++++.+.+.+.+....+ .++++++ ..|.+. .+....+.+++.. ++...+..+
T Consensus 233 ~-~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~l~~l~~~lrD~l~~~~~~~~~~~~d~~~~l~~~a~~--~~~~~L~~~ 309 (342)
T PRK06964 233 L-RDWTLGQLAAGAACDAFACAETLQKLPVPAVLGWLQRWLYDLLAQRLAGAPRYFPAQRAALARCAAA--VDANALARF 309 (342)
T ss_pred H-HHHHHHHHhccCchhHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHcCCCceecHhHHHHHHHHHHc--CCHHHHHHH
Confidence 1 11121222222223455555555554544444 4445543 333221 1222344445555 577888999
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 020071 294 MKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324 (331)
Q Consensus 294 ~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~ 324 (331)
++.+.++...+..|+|+++++|.+++++.+.
T Consensus 310 ~~~i~~~~~~~~~nvn~~L~le~lll~~~~~ 340 (342)
T PRK06964 310 AKAVTRQRAVENHPLAARLVFEELFLGYREL 340 (342)
T ss_pred HHHHHHHHHHhHCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999765
No 59
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=9.1e-32 Score=234.51 Aligned_cols=276 Identities=19% Similarity=0.177 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC----------------CCceEEee--cC------
Q 020071 31 LDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY----------------REAVMELN--AS------ 85 (331)
Q Consensus 31 ~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~----------------~~~~~~~~--~~------ 85 (331)
...++.+.+.+.++++|| +||+||+|+||+++|..+++.+.|++. +.++..+. +.
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~ 89 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKL 89 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccc
Confidence 339999999999999999 899999999999999999999998642 12444442 21
Q ss_pred -CCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccce
Q 020071 86 -DDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAI 164 (331)
Q Consensus 86 -~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~~ 164 (331)
..++++++++..+.....+. .+++||+|||++|.|+..++|+|+|+||+||++++||++|++++++++||+|||+.
T Consensus 90 ~~~I~idqIR~l~~~~~~~p~---~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~ 166 (319)
T PRK08769 90 RTEIVIEQVREISQKLALTPQ---YGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQR 166 (319)
T ss_pred cccccHHHHHHHHHHHhhCcc---cCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheE
Confidence 12568899999888887776 67899999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-hCCCccchhhhhhhcCCCCHHHHHHH
Q 020071 165 VRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-SGFRFVNQENVFKVCDQPHPLHVKNM 243 (331)
Q Consensus 165 i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-~~~~~i~~~~v~~~~~~~~~~~i~~l 243 (331)
+.|.+++.+++..||.+. .+++..+..++..++|++..+...++... .....+ ...+..+... ...+.++
T Consensus 167 i~~~~~~~~~~~~~L~~~------~~~~~~a~~~~~l~~G~p~~A~~~~~~~~~~~r~~~-~~~l~~~~~~--~~~~~~~ 237 (319)
T PRK08769 167 LEFKLPPAHEALAWLLAQ------GVSERAAQEALDAARGHPGLAAQWLREDGLALRRAV-AQDLEQIASG--RAGAVDV 237 (319)
T ss_pred eeCCCcCHHHHHHHHHHc------CCChHHHHHHHHHcCCCHHHHHHHhcCchHHHHHHH-HHHHHHhccC--cccHHHH
Confidence 999999999999999752 35666677889999999999988874321 101111 1112111111 1124455
Q ss_pred HHHHHcCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 020071 244 VRNVLEGK-FDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLS 322 (331)
Q Consensus 244 ~~~~~~~~-~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~ 322 (331)
.+.+.+.+ ......|+.++...... ..++ + . -......+....+.+....+..|.|++|.+|.+++++.
T Consensus 238 a~~~~~~~~~~~l~~~~~Dll~~~~~-~~~~---~---~---~~~~~L~~~~~~l~~~~~~~~~~lN~~L~le~lll~~~ 307 (319)
T PRK08769 238 AQRWTNDGQADQRLRHAADLALAQAS-AGLT---D---P---SRLHKLATWFDAANRTRDLLRTTVRADLAVTELLLAWR 307 (319)
T ss_pred HHHHccCCcHHHHHHHHHHHHHHhcC-Cccc---C---h---hhHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 55544322 34455566665432111 0000 0 0 02233456666777888888899999999999999999
Q ss_pred HHHhhh
Q 020071 323 IVRETA 328 (331)
Q Consensus 323 ~~~~~~ 328 (331)
+.....
T Consensus 308 ~~~~~~ 313 (319)
T PRK08769 308 EGERQP 313 (319)
T ss_pred HHhccc
Confidence 876554
No 60
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=5e-30 Score=227.60 Aligned_cols=237 Identities=21% Similarity=0.308 Sum_probs=186.3
Q ss_pred hhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCC------------C--------
Q 020071 17 EKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPN------------Y-------- 75 (331)
Q Consensus 17 ~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~------------~-------- 75 (331)
..++|..+++++||+++...|...+.+|+.|| +||+||+|+|||++|+.+++.+.|.. +
T Consensus 15 ~~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~ 94 (351)
T PRK09112 15 GVPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQ 94 (351)
T ss_pred CCCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHH
Confidence 34799999999999999999999999999999 89999999999999999999999831 0
Q ss_pred -----CCceEEeecC---------CCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Q 020071 76 -----REAVMELNAS---------DDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNS 141 (331)
Q Consensus 76 -----~~~~~~~~~~---------~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~ 141 (331)
+.++..+... ..++++++++..+.+...+. .++++||||||+|.|+..++|+|++++|+|+.+
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~---~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~ 171 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSG---DGNWRIVIIDPADDMNRNAANAILKTLEEPPAR 171 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccc---cCCceEEEEEchhhcCHHHHHHHHHHHhcCCCC
Confidence 1123333221 23457888887777666654 678999999999999999999999999999999
Q ss_pred cEEEEeeCCCCCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCC
Q 020071 142 TRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFR 221 (331)
Q Consensus 142 ~~~I~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~ 221 (331)
+.||++++.+.+++++++|||..+.|+|++.+++..||.+.....+ ++++.+..+++.++|++|.+++.++....
T Consensus 172 ~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~~~~~--- 246 (351)
T PRK09112 172 ALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLNYGGL--- 246 (351)
T ss_pred ceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHhcCcH---
Confidence 9999999999999999999999999999999999999998543333 77899999999999999999999865210
Q ss_pred ccchhhhhhhcC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020071 222 FVNQENVFKVCD--QPHPLHVKNMVRNVLEGKFDDACSGLKQL 262 (331)
Q Consensus 222 ~i~~~~v~~~~~--~~~~~~i~~l~~~~~~~~~~~~~~~l~~l 262 (331)
.+. ..+...+. .........+.+.+.+.+....+.|+.++
T Consensus 247 ~~~-~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~ 288 (351)
T PRK09112 247 EII-ATIDQLLAGSGPDARKAHKLADALSGRESEVQFDFFRDH 288 (351)
T ss_pred HHH-HHHHHHHhhccCCcchHHHHHHHHhCCChHHHHHHHHHH
Confidence 111 12222222 12223446677766666666666666554
No 61
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=3.2e-30 Score=220.08 Aligned_cols=258 Identities=16% Similarity=0.107 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCC-----------CCCceEEeecCC---CCChHhHHH
Q 020071 31 LDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPN-----------YREAVMELNASD---DRGIDVVRN 95 (331)
Q Consensus 31 ~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~-----------~~~~~~~~~~~~---~~~~~~i~~ 95 (331)
...++.|.+.+.+++++| +||+||+|+||+++|..+++.+.|+. .++++..+.+.. ..+++++++
T Consensus 3 ~~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~ 82 (290)
T PRK05917 3 SAAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRA 82 (290)
T ss_pred cHHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHH
Confidence 356789999999999999 79999999999999999999999953 345565554432 257899999
Q ss_pred HHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccceeeecCCCHHHH
Q 020071 96 KIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEI 175 (331)
Q Consensus 96 ~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~ 175 (331)
..+.....+. .++++|+|||++|.|+.+++|+|+++||+||++++||++|+++++++|||+|||+.+.|+|+.
T Consensus 83 l~~~~~~~p~---e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~~---- 155 (290)
T PRK05917 83 IKKQIWIHPY---ESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPMEE---- 155 (290)
T ss_pred HHHHHhhCcc---CCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccchh----
Confidence 9999888887 789999999999999999999999999999999999999999999999999999999999861
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHH--HHHHHHHHhhCCCccchhhhhhhcCCCCHHHHHHHHHHHHcCCHH
Q 020071 176 LSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQ--ALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFD 253 (331)
Q Consensus 176 ~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~--~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~ 253 (331)
...++++.+..++..++|+++. +...++. .. +...... .+.+..+ .+
T Consensus 156 -----------~~~i~~~~~~~l~~~~~g~~~~~~~~~~l~~----~~----~~~~~~~----re~~~~~--------L~ 204 (290)
T PRK05917 156 -----------KTLVSKEDIAYLIGYAQGKESVTEVGQIVKG----SA----DTDKQVL----RDKTKAM--------LE 204 (290)
T ss_pred -----------ccCCCHHHHHHHHHHhCCChhHHHHHHHHhc----ch----HHHHHHH----HHHHHHH--------HH
Confidence 1147888999999999999962 2222211 10 1000000 1111222 23
Q ss_pred HHHHHHHHHH--HcCCCHH-HHHHHHHHHHHhcccChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhh
Q 020071 254 DACSGLKQLY--DLGYSPT-DIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRETA 328 (331)
Q Consensus 254 ~~~~~l~~l~--~~g~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~~~~~ 328 (331)
-.+.++++++ ..|.+.. .+.......+... +...+..+++.+.++.++|.+|+|++++++.+++++.++++++
T Consensus 205 ~ll~~~RD~l~~~~~~~~~~l~~~d~~~~l~~~--~~~~l~~~i~~i~~a~~~l~~N~N~~l~le~l~l~l~~~~~~~ 280 (290)
T PRK05917 205 VLLQLFRDRFLLALKVPASALAYPDLLKEILTL--PVLPLEKVLSIIERAVQALDNSSSAPSCLEWVALQLWSLKNRQ 280 (290)
T ss_pred HHHHHHHHHHHHHcCCchhhhccHHHHHHHHhc--ccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 3466777753 4444432 2223332222222 2333779999999999999999999999999999999988765
No 62
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=4.2e-30 Score=229.26 Aligned_cols=293 Identities=21% Similarity=0.263 Sum_probs=205.8
Q ss_pred cCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC----------------------
Q 020071 19 YRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY---------------------- 75 (331)
Q Consensus 19 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~---------------------- 75 (331)
.+|+++++++||+++++.|.+.+.++++|| +||+||+|+||+++|..+++.++|+..
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 699999999999999999999999999999 899999999999999999999998642
Q ss_pred -------CCceEEeec---C------CCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 020071 76 -------REAVMELNA---S------DDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS 139 (331)
Q Consensus 76 -------~~~~~~~~~---~------~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~ 139 (331)
..++..+.. . ..+.++++++....+...+. .++++|+||||+|.++..++|+|++++|+|+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~---~~~~kVviIDead~m~~~aanaLLK~LEepp 169 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAA---EGGWRVVIVDTADEMNANAANALLKVLEEPP 169 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcc---cCCCEEEEEechHhcCHHHHHHHHHHHhcCC
Confidence 112333332 1 23567889988887776665 6789999999999999999999999999999
Q ss_pred CCcEEEEeeCCCCCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 020071 140 NSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSG 219 (331)
Q Consensus 140 ~~~~~I~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 219 (331)
.++.||++|+++..++++++|||+.+.|.|++.+++.+++.+.. ...+++.+..++..++|+++.+++.++....
T Consensus 170 ~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~----~~~~~~~~~~l~~~s~Gsp~~Al~ll~~~~~- 244 (365)
T PRK07471 170 ARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG----PDLPDDPRAALAALAEGSVGRALRLAGGDGL- 244 (365)
T ss_pred CCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc----ccCCHHHHHHHHHHcCCCHHHHHHHhcccch-
Confidence 99999999999999999999999999999999999999998742 2345555678899999999999998864210
Q ss_pred CCccchhhhhhhcC---CCCHHHHHHHHHHHHcCC----HHHHHHH----HHHHHHcCCC---HHHH----HHHHHHHHH
Q 020071 220 FRFVNQENVFKVCD---QPHPLHVKNMVRNVLEGK----FDDACSG----LKQLYDLGYS---PTDI----ITTLFRIIK 281 (331)
Q Consensus 220 ~~~i~~~~v~~~~~---~~~~~~i~~l~~~~~~~~----~~~~~~~----l~~l~~~g~~---~~~i----~~~l~~~~~ 281 (331)
.. .+.+...+. ......+..+.+.+...+ +...+.| +.++...+.. .... ...+.+...
T Consensus 245 --~~-~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~l~d~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (365)
T PRK07471 245 --AL-YRRLTALLDTLPRLDRRALHALADAAAGRDRAARFALFLDLLDRWLARLARAGARGAPPPEAVPGEAALLARLAP 321 (365)
T ss_pred --HH-HHHHHHHHhccccCCHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHhhcc
Confidence 01 111212221 222333455666555554 3333333 3333332111 1111 011111111
Q ss_pred hcccChHhHHHHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHH
Q 020071 282 NYEMAEHLKLEFMKEAGFAHMRIC-DGVGSYLQLCGLLAKLSIV 324 (331)
Q Consensus 282 ~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~l~l~~l~~~l~~~ 324 (331)
. .......++.+.+.+...... .|.|..+.++.++.++...
T Consensus 322 ~--~~~~~~~~~~~~l~~~~~~~~~~~Ln~~l~~~~~l~~~~~~ 363 (365)
T PRK07471 322 D--ARLRRWAEVWEKIGRRARRTEAVNLDRKALVLDVFGLLAEA 363 (365)
T ss_pred c--hhHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHh
Confidence 1 122223344444443333333 5889999999999998754
No 63
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=5.8e-30 Score=222.92 Aligned_cols=275 Identities=13% Similarity=0.135 Sum_probs=200.0
Q ss_pred HHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC------------------CCceEEeecC---CCCCh
Q 020071 33 AVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY------------------REAVMELNAS---DDRGI 90 (331)
Q Consensus 33 ~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~------------------~~~~~~~~~~---~~~~~ 90 (331)
.++.+.+.+.++++|| +||+||+|+||+++|+.+++.+.|.+. +.++..+.+. ..+++
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~v 90 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITV 90 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCH
Confidence 8999999999999999 899999999999999999999998642 2356555543 34688
Q ss_pred HhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccceeeecCC
Q 020071 91 DVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRL 170 (331)
Q Consensus 91 ~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~~i~~~~~ 170 (331)
+++++..+.....+. .+++||+|||++|.|+..++|+|+|++||||+++.||++|+++++++|||+|||+.+.|+|+
T Consensus 91 dqiR~l~~~~~~~~~---~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~ 167 (319)
T PRK06090 91 EQIRQCNRLAQESSQ---LNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPP 167 (319)
T ss_pred HHHHHHHHHHhhCcc---cCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCC
Confidence 999998877777765 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-hCCCccchhhhhhhcCCCCHHHHHHHHHHHHc
Q 020071 171 SDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-SGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249 (331)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~ 249 (331)
+.+++.+|+.. .++ + ....+++.++|++..+...++... ...... .+.+...+.... ..++.+...+.+
T Consensus 168 ~~~~~~~~L~~----~~~--~--~~~~~l~l~~G~p~~A~~~~~~~~~~~~~~~-~~~l~~~l~~~~-~~~~~~a~~~~~ 237 (319)
T PRK06090 168 STAQAMQWLKG----QGI--T--VPAYALKLNMGSPLKTLAMMKEGGLEKYHKL-ERQLVDALSGPV-SDQLKCASLIAA 237 (319)
T ss_pred CHHHHHHHHHH----cCC--c--hHHHHHHHcCCCHHHHHHHhCCCcHHHHHHH-HHHHHHHHhcCc-ccHHHHHHHHhc
Confidence 99999999975 233 3 235678899999999988875211 000001 112222222222 234455544433
Q ss_pred CCHHHHHH----HHHHHH--HcCCCHHHHHHHHHHHHHhcccChHhHHHHHHHHHHHHHHHh--cCCCchHHHHHHHHHH
Q 020071 250 GKFDDACS----GLKQLY--DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC--DGVGSYLQLCGLLAKL 321 (331)
Q Consensus 250 ~~~~~~~~----~l~~l~--~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~--~~~~~~l~l~~l~~~l 321 (331)
.+ ...+. ++.++. ..|....+....+..+ .. .+.......+..+.++..++. .+.|..+.++.+++.+
T Consensus 238 ~~-~~~l~~L~~ll~Dll~~~~g~~~~~~~~~~~~l-~~--~~~~~l~~~~~~l~~~~~~L~~~~~ln~elll~~lll~~ 313 (319)
T PRK06090 238 DP-LTHLSWLWLLLTDAQKVHFGVQNEYYLPGSAAL-GP--FTYSGLYVSTAKLERLKEQLQQFSGLNTELLIMNWLIES 313 (319)
T ss_pred Cc-HHHHHHHHHHHHHHHHHHhCCcchhhhHHHHHH-Hh--hCHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHH
Confidence 33 23333 344443 2332222322222222 22 355566778888889999987 5669999999999988
Q ss_pred HHH
Q 020071 322 SIV 324 (331)
Q Consensus 322 ~~~ 324 (331)
.+-
T Consensus 314 ~~~ 316 (319)
T PRK06090 314 REE 316 (319)
T ss_pred HHH
Confidence 653
No 64
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.98 E-value=6.4e-31 Score=213.16 Aligned_cols=197 Identities=20% Similarity=0.260 Sum_probs=144.2
Q ss_pred CCCCCCCCchhhhcCCCCCCccccCHHHHHHHHHHHH-----cCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceE
Q 020071 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIAR-----DGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVM 80 (331)
Q Consensus 6 ~~~~~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~-----~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~ 80 (331)
+...+...|+.++.||++|+|++||++++..+.-+++ +..++|++||||||+||||+|+.+++++ +.++.
T Consensus 5 ~~~~~~~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~-----~~~~~ 79 (233)
T PF05496_consen 5 PQEQEEEAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL-----GVNFK 79 (233)
T ss_dssp -------S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC-----T--EE
T ss_pred cccCCcchhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc-----CCCeE
Confidence 3445567789999999999999999999998766554 2457899999999999999999999999 67787
Q ss_pred EeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc------------------CCc
Q 020071 81 ELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS------------------NST 142 (331)
Q Consensus 81 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~------------------~~~ 142 (331)
.++++......++...+.. ..++.|+||||+|++++..++.|+.+||+.. +..
T Consensus 80 ~~sg~~i~k~~dl~~il~~---------l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 80 ITSGPAIEKAGDLAAILTN---------LKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp EEECCC--SCHHHHHHHHT-----------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred eccchhhhhHHHHHHHHHh---------cCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 7777655444444444432 2346799999999999999999999999532 234
Q ss_pred EEEEeeCCCCCCChhhhccccee-eecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 020071 143 RFALACNVSSKIIEPIQSRCAIV-RFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT 216 (331)
Q Consensus 143 ~~I~~~~~~~~l~~~l~sr~~~i-~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~ 216 (331)
.+|.+|+....+.+++++|+.++ ++..++.+|+..++.+-++..++.++++++.+|+++|.|++|-|.++|+.+
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 57888888899999999999886 799999999999999999999999999999999999999999999999875
No 65
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=2.9e-28 Score=210.97 Aligned_cols=277 Identities=13% Similarity=0.158 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCC--------CCCceEEeec-CCCCChHhHHHHHHHHH
Q 020071 32 DAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPN--------YREAVMELNA-SDDRGIDVVRNKIKMFA 101 (331)
Q Consensus 32 ~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~--------~~~~~~~~~~-~~~~~~~~i~~~i~~~~ 101 (331)
.+++.+.+.+++++++| +||+|++|+||+.++..+++.+.|.. ...++..++. ....+++++++..+...
T Consensus 3 ~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~ 82 (299)
T PRK07132 3 NWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLY 82 (299)
T ss_pred hHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhc
Confidence 46788999999999999 58999999999999999999998842 1124455542 23357788888877766
Q ss_pred hcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccceeeecCCCHHHHHHHHHH
Q 020071 102 QKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181 (331)
Q Consensus 102 ~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~ 181 (331)
..++ ..++++|+|||+++.++..++|+|++++|+||+++.||+++++++++++|++|||+++.|.|++++++..|+..
T Consensus 83 ~~~~--~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 83 FSSF--VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred cCCc--ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH
Confidence 6654 12689999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred HHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCCccchhhhhhhcCCC--CHHHHHHHHHHHHcCC-----HHH
Q 020071 182 VVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQP--HPLHVKNMVRNVLEGK-----FDD 254 (331)
Q Consensus 182 ~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~--~~~~i~~l~~~~~~~~-----~~~ 254 (331)
. .++++.+..++..++ ++++|...+...... . ...+.+.+... ....+..+.+...+++ ..-
T Consensus 161 ~------~~~~~~a~~~a~~~~-~~~~a~~~~~~~~~~---~-~~~~~~~l~~~~~~~~~l~~~~~~~~~ke~~~~ll~~ 229 (299)
T PRK07132 161 K------NKEKEYNWFYAYIFS-NFEQAEKYINKESEN---L-LKKFEEALNKSLKEKYELILFLNKKLTKENALFLLKL 229 (299)
T ss_pred c------CCChhHHHHHHHHcC-CHHHHHHHHhcCCHH---H-HHHHHHHHHHhhhhHHHHHHHHHhhcChhhHHHHHHH
Confidence 3 367777888888877 599998886542100 0 01111111110 1122333333322211 112
Q ss_pred HHHHHHHHH--HcCCCHHHHHHHHHHHHHhcccChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 020071 255 ACSGLKQLY--DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVR 325 (331)
Q Consensus 255 ~~~~l~~l~--~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~~ 325 (331)
...|+++++ ..+.+...+... ....+....++ .+++..+.++..++.+|+|..+++|.|++++.+++
T Consensus 230 l~~~~rd~l~~~~~~~~~~i~~~-~~~i~~~~~s~---~~li~~i~~~~~~L~~N~N~~l~~e~lll~l~e~~ 298 (299)
T PRK07132 230 LKFFFKSIFANKKKKNPKNIKVA-FSKKKKFKIEF---FELITIIDEFLNSLETNENFNLQKQAFLVKIYEIY 298 (299)
T ss_pred HHHHHHHHHHHhccCChHhHhhH-HHHHHHHhcCH---HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 233444443 233444333333 33333322233 34588999999999999999999999999999876
No 66
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=1.5e-27 Score=209.83 Aligned_cols=273 Identities=18% Similarity=0.142 Sum_probs=196.1
Q ss_pred HHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC--------------------CCceEEeecC------
Q 020071 33 AVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY--------------------REAVMELNAS------ 85 (331)
Q Consensus 33 ~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~--------------------~~~~~~~~~~------ 85 (331)
.++.+... .+++|| +||+||+|+|||++|+.+++.+.|+.. +.+++.+.+.
T Consensus 9 ~w~~l~~~--~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~ 86 (325)
T PRK08699 9 QWRQIAEH--WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPEN 86 (325)
T ss_pred HHHHHHHh--cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccc
Confidence 67777666 578999 899999999999999999999998532 2456677653
Q ss_pred ----CCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcc
Q 020071 86 ----DDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSR 161 (331)
Q Consensus 86 ----~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr 161 (331)
..++++++++.++.....+. .++++|++||+++.|+..++++|++++|+|+.++.||++|++++.++++++||
T Consensus 87 g~~~~~I~id~iR~l~~~~~~~p~---~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SR 163 (325)
T PRK08699 87 GRKLLQIKIDAVREIIDNVYLTSV---RGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSR 163 (325)
T ss_pred cccCCCcCHHHHHHHHHHHhhCcc---cCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHH
Confidence 23578999999888887776 67899999999999999999999999999998899999999999999999999
Q ss_pred cceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCCccchhhhhhhcCCCCHHHHH
Q 020071 162 CAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVK 241 (331)
Q Consensus 162 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~ 241 (331)
|+.+.|.|++.+++..||.+. ++ +... ..+ ..++|.+..+... .... ..+.+.+.+.......+.
T Consensus 164 c~~~~~~~~~~~~~~~~L~~~----~~--~~~~-~~l-~~~~g~p~~~~~~--~~~~-----~r~~~~~~l~~~~~~~~l 228 (325)
T PRK08699 164 CRKMVLPAPSHEEALAYLRER----GV--AEPE-ERL-AFHSGAPLFDEEP--ELRA-----LRIKLLDILAEPRLLKIL 228 (325)
T ss_pred hhhhcCCCCCHHHHHHHHHhc----CC--CcHH-HHH-HHhCCChhhhcCc--hHHH-----HHHHHHHHHHccChhhHH
Confidence 999999999999999999752 33 3222 123 4567776432110 0000 001222222222334555
Q ss_pred HHHHHHHcCC--HHH----HHHHHHHHH--HcCCC---HHHHHHHHHHHHHhcccChHhHHHHHHHHHHHHHHHhcCCCc
Q 020071 242 NMVRNVLEGK--FDD----ACSGLKQLY--DLGYS---PTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGS 310 (331)
Q Consensus 242 ~l~~~~~~~~--~~~----~~~~l~~l~--~~g~~---~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 310 (331)
.+.+.+.+.+ ... ...++++++ ..|.. ..+....+..++.. ++...+..+++.+.++...+..|+|+
T Consensus 229 ~~~~~~~~~k~~~~~~l~~l~~~~rDll~~~~~~~~~~~~d~~~~l~~~a~~--~~~~~L~~~~~~l~~~~~~l~~n~n~ 306 (325)
T PRK08699 229 DYAALFDKEKLPLAVFVGWMQKWLVDLGLCLQHMKPVYYPAYEDRLLQTASG--FRPRNVFAAEDMLKQLAPYGFHTLNV 306 (325)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHHHcCCCcccCHhHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHhhCCCCH
Confidence 5555554422 333 344555553 22322 12223334444555 57788889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhh
Q 020071 311 YLQLCGLLAKLSIVRET 327 (331)
Q Consensus 311 ~l~l~~l~~~l~~~~~~ 327 (331)
++.+|.+++++.++.++
T Consensus 307 ~L~le~lll~~~~~~~~ 323 (325)
T PRK08699 307 KMQIEHLLINYLELKKE 323 (325)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999887653
No 67
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.4e-27 Score=213.57 Aligned_cols=287 Identities=35% Similarity=0.469 Sum_probs=212.8
Q ss_pred CccccCHHHHHHHHHHHH-cCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCC-------------------CCCceEEee
Q 020071 25 CDIVGNLDAVARLGIIAR-DGNMPN-LILAGPPGTGKTTSILALAHELLGPN-------------------YREAVMELN 83 (331)
Q Consensus 25 ~~~ig~~~~~~~l~~~l~-~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~-------------------~~~~~~~~~ 83 (331)
+++++++.....+..+.. .++.|| +||+||+|+|||++|.++++.+.|+. ...++.+++
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CCcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 367888888888888877 678999 99999999999999999999999875 356899999
Q ss_pred cCCCCCh----HhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhh
Q 020071 84 ASDDRGI----DVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQ 159 (331)
Q Consensus 84 ~~~~~~~----~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~ 159 (331)
+++..+. +.+++........+. .++++||||||+|.|+.+++|+|++++|+|+.+++||++||++.++.++|+
T Consensus 81 ~s~~~~~~i~~~~vr~~~~~~~~~~~---~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~ 157 (325)
T COG0470 81 PSDLRKIDIIVEQVRELAEFLSESPL---EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIR 157 (325)
T ss_pred ccccCCCcchHHHHHHHHHHhccCCC---CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhh
Confidence 9888663 455555555444443 578999999999999999999999999999999999999999999999999
Q ss_pred cccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCCccchhhhhhhcCCCCHH-
Q 020071 160 SRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPL- 238 (331)
Q Consensus 160 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~- 238 (331)
|||+.+.|+|++......+.+ ++.+..++..++||.|.+++.++..+.. ......+.+........
T Consensus 158 SRc~~i~f~~~~~~~~i~~~e-----------~~~l~~i~~~~~gd~r~~i~~lq~~~~~--~~~~~~~~~~~~~~~~~~ 224 (325)
T COG0470 158 SRCQRIRFKPPSRLEAIAWLE-----------DQGLEEIAAVAEGDARKAINPLQALAAL--EIGEESIYEALLLALPES 224 (325)
T ss_pred hcceeeecCCchHHHHHHHhh-----------ccchhHHHHHHHHHHHcCCCHHHHHHHh--cccHHHHHHHHHhhChhh
Confidence 999999999955444444433 5667889999999999999999887643 23333333333332222
Q ss_pred ----HHHHHHHHHHcCCHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHhcc---cChHhHHHHHHHHHHHHHHHhcCCCc
Q 020071 239 ----HVKNMVRNVLEGKFDDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYE---MAEHLKLEFMKEAGFAHMRICDGVGS 310 (331)
Q Consensus 239 ----~i~~l~~~~~~~~~~~~~~~l~~-l~~~g~~~~~i~~~l~~~~~~~~---~~~~~~~~~~~~l~~~~~~l~~~~~~ 310 (331)
...+++..... +...+...... ++..+.........+.+...... ............+.....++..+...
T Consensus 225 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (325)
T COG0470 225 LAQLAALELLKLAEN-KFLEALEKLWLLLLLEGLLGEDLLDQLQRELLKLDKALIQEEKAAELLDALAQARRRLLDGLLA 303 (325)
T ss_pred cccccHHHHHHHHHh-cchhHHHHHHHHHHHcCcchhHHHHHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444432 23333444433 45556655555555544444321 34455678888889999999999999
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 020071 311 YLQLCGLLAKLSIVRETA 328 (331)
Q Consensus 311 ~l~l~~l~~~l~~~~~~~ 328 (331)
.++++.++..+.......
T Consensus 304 ~~~~~~~~~~~~~~~~~~ 321 (325)
T COG0470 304 LIQLENLLAELLLLQLLL 321 (325)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999998887665443
No 68
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=9.9e-27 Score=199.55 Aligned_cols=260 Identities=18% Similarity=0.196 Sum_probs=185.4
Q ss_pred cCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC-------------------CCceEEeecC-CC
Q 020071 29 GNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY-------------------REAVMELNAS-DD 87 (331)
Q Consensus 29 g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~-------------------~~~~~~~~~~-~~ 87 (331)
+|+.+++.|.+.+.+++++| +||+|| .||+++|..+++.+.|.+. +.++..+.+. ..
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~ 83 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQV 83 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCc
Confidence 57889999999999999999 799996 6899999999999998642 2344444443 23
Q ss_pred CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccceeee
Q 020071 88 RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRF 167 (331)
Q Consensus 88 ~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~~i~~ 167 (331)
++++++++.+..+...+. .++++|+|||++|+|+..++|+|+|++|+||+++.||++|++++.++|||+|||+.+.|
T Consensus 84 I~idqIR~l~~~~~~~p~---~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f 160 (290)
T PRK07276 84 IKTDTIRELVKNFSQSGY---EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHF 160 (290)
T ss_pred CCHHHHHHHHHHHhhCcc---cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeC
Confidence 678999999999988887 78899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCCccchhhhhhhcCCCCHHHHHHHHHHH
Q 020071 168 SRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNV 247 (331)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~ 247 (331)
++ +.+++.+++.+ .| ++.+....++..+ |+++.++..++.-.. . + .. ..+..+...+
T Consensus 161 ~~-~~~~~~~~L~~----~g--~~~~~a~~la~~~-~s~~~A~~l~~~~~~----~--~-~~--------~~~~~~~~~l 217 (290)
T PRK07276 161 PK-NEAYLIQLLEQ----KG--LLKTQAELLAKLA-QSTSEAEKLAQNKKF----L--E-LI--------DQAERFVTIL 217 (290)
T ss_pred CC-cHHHHHHHHHH----cC--CChHHHHHHHHHC-CCHHHHHHHhCChhH----H--H-HH--------HHHHHHHHHh
Confidence 77 77788777753 34 5555566666665 589999888742100 0 0 00 1122222222
Q ss_pred HcCCHHHHHHHHHHHHHcCCC---HHHHHHHHHHHH-HhcccChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 020071 248 LEGKFDDACSGLKQLYDLGYS---PTDIITTLFRII-KNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLA 319 (331)
Q Consensus 248 ~~~~~~~~~~~l~~l~~~g~~---~~~i~~~l~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~ 319 (331)
... ...++-.+.++.....+ ...++..+..+. ++ +........+..+.+++....+|+|.+++||.|++
T Consensus 218 ~~~-~~~~~l~~~~l~~~~~~~e~q~~~l~~l~~~~~~~--~~~~~~~~~L~~~~~~r~~w~~Nv~~~~~le~l~l 290 (290)
T PRK07276 218 LKD-KDEAYLQVARLVQLADEKEEQDQVLTLLTLLLAQE--RMQVNVRTQLEAVYQARKMWQSNVSFQNALEYMVL 290 (290)
T ss_pred ccC-hHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHhccCHHHHHHHHhC
Confidence 222 21222222233222112 122222222222 12 23345677788889999999999999999999863
No 69
>PRK05907 hypothetical protein; Provisional
Probab=99.95 E-value=2e-25 Score=194.77 Aligned_cols=274 Identities=12% Similarity=0.113 Sum_probs=226.1
Q ss_pred HHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCc
Q 020071 33 AVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH 112 (331)
Q Consensus 33 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~ 112 (331)
....+.+.+++|. |.+++||.+- ....+.+.+.+..++. ..+++.+. .+.+.+..+.+.|+ ++++
T Consensus 6 ~~~~~~~~~~~~~-~~y~~~g~~~---~~~~~~l~~~~~~~~~----~~fdg~~~----~~~~ii~~aetlPf---Faer 70 (311)
T PRK05907 6 SFKDFSQYYEEKR-PAVIVIGSSS---EEDKDIFIELLVSGRK----SEFDGQGL----LQQELLSWTEHFGL---FASQ 70 (311)
T ss_pred HHHHHHHHHhcCC-ceEEEecCCc---HHHHHHHHHHhCCCcc----ceecCCCC----CHHHHHHHHhcCCc---ccCe
Confidence 3456677788888 8889999987 6666777666543221 33454443 57888999999998 8999
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEE-EeeCCC---CCCChhhhccccee----eecCCCHHHHHHHHHHHHH
Q 020071 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFA-LACNVS---SKIIEPIQSRCAIV----RFSRLSDEEILSRLMVVVQ 184 (331)
Q Consensus 113 ~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I-~~~~~~---~~l~~~l~sr~~~i----~~~~~~~~~~~~~l~~~~~ 184 (331)
++|++.+.+.++....+.|.+++++|++++.+| ++. .. .++.+.+.. +..+ .|.++.+.++..|+.++++
T Consensus 71 RlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~-~~d~~kkl~K~i~k-~~~v~~~~e~~~l~e~~L~~Wi~~~~~ 148 (311)
T PRK05907 71 ETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTT-KQECFSSLSKKLSS-ALCLSLFGEWFADRDKRIAQLLIQRAK 148 (311)
T ss_pred EEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEe-cccHHHHHHHHHhh-cceeccccccCCCCHHHHHHHHHHHHH
Confidence 999999988887777889999999999976666 544 22 123344442 5555 8999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHh---hCCCccchhhhhhhcCCCCHHHHHHHHHHHHcCCHHHHHHHHH
Q 020071 185 EEKVPYVPEGLEAIIFTA-DGDMRQALNNLQATY---SGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLK 260 (331)
Q Consensus 185 ~~~~~i~~~~~~~l~~~~-~g~~r~~~~~l~~~~---~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~ 260 (331)
+.|+.++++++++++.++ +||+..+.++++++. ..++.||.++|..++....++++|++++++..++..+|+++++
T Consensus 149 ~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~s~e~nIF~L~dai~~~~~~~Al~il~ 228 (311)
T PRK05907 149 ELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVVKKEAASLWKLRDALLRRDRVEGHSLLR 228 (311)
T ss_pred HcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcCcccccHHHHHHHHHccCHHHHHHHHH
Confidence 999999999999999999 599999999999974 4467899999999999999999999999999999999999999
Q ss_pred HHHHc-CCCHHHHHHHHHHHHHhc--------c----------cChHhHHHHHHHHHHHHHHHhcCC-CchHHHHHHHHH
Q 020071 261 QLYDL-GYSPTDIITTLFRIIKNY--------E----------MAEHLKLEFMKEAGFAHMRICDGV-GSYLQLCGLLAK 320 (331)
Q Consensus 261 ~l~~~-g~~~~~i~~~l~~~~~~~--------~----------~~~~~~~~~~~~l~~~~~~l~~~~-~~~l~l~~l~~~ 320 (331)
+|... |++|..|++.+.|++ -+ + .+...+.+++..+.++|+++|+|. ++.+.+|.|+++
T Consensus 229 ~Ll~~~ge~p~~ILall~rQf-l~~~k~l~~~g~~~~~p~~vafs~~~L~~~~~~l~~~D~~iKtg~~d~~~~lElli~~ 307 (311)
T PRK05907 229 SLLSDMGEDPLGIIAFLRSQC-LYGLRSIEEQSKERKHRIFVAYGKERLLQALNLLFYAESLIKNNVQDPILAVETLVIR 307 (311)
T ss_pred HHHHhcCCChHHHHHHHHHHH-HHHHHHHHHhcCCCCCCeEEEECHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 99999 999999999988865 21 1 123456899999999999999876 999999999999
Q ss_pred HHHH
Q 020071 321 LSIV 324 (331)
Q Consensus 321 l~~~ 324 (331)
+|.+
T Consensus 308 ~~~~ 311 (311)
T PRK05907 308 MTNL 311 (311)
T ss_pred HhcC
Confidence 9853
No 70
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.95 E-value=4.2e-27 Score=193.44 Aligned_cols=166 Identities=28% Similarity=0.435 Sum_probs=143.2
Q ss_pred HHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCC-------------------CCCceEEeecC-CCCChHhH
Q 020071 35 ARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPN-------------------YREAVMELNAS-DDRGIDVV 93 (331)
Q Consensus 35 ~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~-------------------~~~~~~~~~~~-~~~~~~~i 93 (331)
+.|.+.+.+++++| +|||||+|+|||++++.+++.+.|.. ...++..+... ...+++.+
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQV 81 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHH
Confidence 46788899999998 79999999999999999999998851 11123333222 23567888
Q ss_pred HHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccceeeecCCCHH
Q 020071 94 RNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDE 173 (331)
Q Consensus 94 ~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~~i~~~~~~~~ 173 (331)
++.++.+...++ .+++++|||||+|.++.++++.|++++|+|++++.||+++++..++.++++|||.++.|.|++.+
T Consensus 82 ~~i~~~~~~~~~---~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~ 158 (188)
T TIGR00678 82 RELVEFLSRTPQ---ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEE 158 (188)
T ss_pred HHHHHHHccCcc---cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHH
Confidence 888888887776 68899999999999999999999999999999999999999889999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHH
Q 020071 174 EILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQA 209 (331)
Q Consensus 174 ~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~ 209 (331)
++.+|+.+. | +++++++.+++.++|++|.+
T Consensus 159 ~~~~~l~~~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 159 ALLQWLIRQ----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred HHHHHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence 999999875 4 78999999999999999864
No 71
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.95 E-value=5.7e-27 Score=186.82 Aligned_cols=140 Identities=36% Similarity=0.579 Sum_probs=116.1
Q ss_pred cCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC------------------CCceEEeecCCC--
Q 020071 29 GNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY------------------REAVMELNASDD-- 87 (331)
Q Consensus 29 g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~------------------~~~~~~~~~~~~-- 87 (331)
||+++++.|.+.++++++|| +||+||+|+||+++|..+++.++|... ..++..++....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 89999999999999999999 799999999999999999999998653 345666666543
Q ss_pred -CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccceee
Q 020071 88 -RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVR 166 (331)
Q Consensus 88 -~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~~i~ 166 (331)
.+++++++....+...+. .++++|+||||+|.|+.+++|+|+++||+||.+++||++|++.+++++|++|||+.+.
T Consensus 81 ~i~i~~ir~i~~~~~~~~~---~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~ 157 (162)
T PF13177_consen 81 SIKIDQIREIIEFLSLSPS---EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIR 157 (162)
T ss_dssp SBSHHHHHHHHHHCTSS-T---TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEE
T ss_pred hhhHHHHHHHHHHHHHHHh---cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEe
Confidence 678999988888877776 6789999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 020071 167 FSRLS 171 (331)
Q Consensus 167 ~~~~~ 171 (331)
|+|++
T Consensus 158 ~~~ls 162 (162)
T PF13177_consen 158 FRPLS 162 (162)
T ss_dssp E----
T ss_pred cCCCC
Confidence 99875
No 72
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.95 E-value=9.9e-26 Score=200.89 Aligned_cols=210 Identities=19% Similarity=0.194 Sum_probs=166.3
Q ss_pred CCCCCchhhhcCCCCCCccccCHHHHHHHHHHHHc-----CCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEee
Q 020071 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARD-----GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELN 83 (331)
Q Consensus 9 ~~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~-----~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 83 (331)
.....+|..+|||.+|++++|+++.+..+...+.. ...+|++||||+|+|||++|+.+++.+ +..+...+
T Consensus 9 ~~~~~~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l-----~~~~~~~~ 83 (328)
T PRK00080 9 EEEEDEIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM-----GVNIRITS 83 (328)
T ss_pred ccccchhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh-----CCCeEEEe
Confidence 34445789999999999999999999998877753 234569999999999999999999998 44444444
Q ss_pred cCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc------------------CCcEEE
Q 020071 84 ASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS------------------NSTRFA 145 (331)
Q Consensus 84 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~------------------~~~~~I 145 (331)
+........+...+.. .+.+.+++|||+|.++...++.|...+++.. +.+.+|
T Consensus 84 ~~~~~~~~~l~~~l~~---------l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li 154 (328)
T PRK00080 84 GPALEKPGDLAAILTN---------LEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLI 154 (328)
T ss_pred cccccChHHHHHHHHh---------cccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEE
Confidence 4433222233333221 2346799999999999888888888888642 236678
Q ss_pred EeeCCCCCCChhhhccc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-----hC
Q 020071 146 LACNVSSKIIEPIQSRC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-----SG 219 (331)
Q Consensus 146 ~~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-----~~ 219 (331)
++++....+.+++++|| ..+.|.+++.+++.++++..+...++.+++++++.|++.++|++|.+.+.++... .+
T Consensus 155 ~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~ 234 (328)
T PRK00080 155 GATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKG 234 (328)
T ss_pred eecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC
Confidence 88888889999999998 5689999999999999999999999999999999999999999999999997642 23
Q ss_pred CCccchhhhhhhc
Q 020071 220 FRFVNQENVFKVC 232 (331)
Q Consensus 220 ~~~i~~~~v~~~~ 232 (331)
.+.|+.+.+...+
T Consensus 235 ~~~I~~~~v~~~l 247 (328)
T PRK00080 235 DGVITKEIADKAL 247 (328)
T ss_pred CCCCCHHHHHHHH
Confidence 4567777776544
No 73
>PRK05629 hypothetical protein; Validated
Probab=99.94 E-value=2.6e-24 Score=190.84 Aligned_cols=268 Identities=12% Similarity=0.102 Sum_probs=221.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCC-CCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHH
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGA 127 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~ 127 (331)
++|||+...-.......+.+.+..++ ...++..+++.+. .+.+++. ..+.++ ++++++|+|++++...+..
T Consensus 9 yL~~G~e~~l~~~~~~~i~~~~~~~~~~~~n~~~~d~~e~----~~~~l~~-~~t~sl---F~~~rlV~v~~~~~~~~~~ 80 (318)
T PRK05629 9 HLVLGDDEFLAERARLNIVHDIRSSMADSLQVTTLKASEV----SQGELLD-ALSPSL---FGEDRVIVLTNMEQAGKEP 80 (318)
T ss_pred EEEEeCHHHHHHHHHHHHHHHHhccCCCCCceEEeecccC----CHHHHHH-hhCcCc---cCCceEEEEeChHhcChhH
Confidence 69999988777667676776665443 3567888887765 3455554 345555 8899999999998877767
Q ss_pred HHHHHHHHHHhcCCcEEEEeeCCC---CCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Q 020071 128 QQALRRTMEIYSNSTRFALACNVS---SKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG 204 (331)
Q Consensus 128 ~~~Ll~~le~~~~~~~~I~~~~~~---~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g 204 (331)
.+.++.++++|++++.+|+++... .++.+.++..+.++.|.|+.+.++..|+.+++++.|+.++++++++|+..+++
T Consensus 81 ~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~~g~~i~~~A~~~L~~~~g~ 160 (318)
T PRK05629 81 TDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKNHGVRPTPDVVHALLEGVGS 160 (318)
T ss_pred HHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCc
Confidence 888999999999988888887532 34556888889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhh-CCCccchhhhhhhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-
Q 020071 205 DMRQALNNLQATYS-GFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKN- 282 (331)
Q Consensus 205 ~~r~~~~~l~~~~~-~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~- 282 (331)
|+..+.+++++++. .++.||.++|.+++....+.++|++++++..++...|+..+.+|+..|++|..|++.+.+.++.
T Consensus 161 dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~iF~l~dAv~~g~~~~Al~~l~~l~~~g~~pi~il~~l~~~~r~l 240 (318)
T PRK05629 161 DLRELASAISQLVEDTQGNVTVEKVRAYYVGVAEVSGFDIADLACAGQVSKAVASTRRALQLGVSPVALAAALSMKVGQI 240 (318)
T ss_pred cHHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCccchHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 99999999999863 3567999999999999999999999999999999999999999999999999998887643221
Q ss_pred ------------------cccCh---------------HhHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHH
Q 020071 283 ------------------YEMAE---------------HLKLEFMKEAGFAHMRICD-GVGSYLQLCGLLAKLSIV 324 (331)
Q Consensus 283 ------------------~~~~~---------------~~~~~~~~~l~~~~~~l~~-~~~~~l~l~~l~~~l~~~ 324 (331)
+++++ ..+.+++..+.++|+.+|+ +.++.+.||.++.+++++
T Consensus 241 ~~l~~~~~~~~~~~ia~~l~i~p~~~~~~~~~ar~~s~~~L~~~l~~l~~~D~~~K~~~~d~~~~lE~~i~~~~~~ 316 (318)
T PRK05629 241 ARLYSTRGRIDSFELAKELGMPPFVVEKTAKVARNWSGDAVSEAVILMADLDAAVKGQGGDPEFAIESAVRRVAEL 316 (318)
T ss_pred HHHHhhcCCCCHHHHHHHcCCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhh
Confidence 12222 1224889999999999997 459999999999999874
No 74
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=99.94 E-value=2.9e-24 Score=191.81 Aligned_cols=273 Identities=17% Similarity=0.166 Sum_probs=221.9
Q ss_pred CeEEEeCCCCccHHHHHHHHHHHhcCCC-CCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCC--
Q 020071 47 PNLILAGPPGTGKTTSILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM-- 123 (331)
Q Consensus 47 ~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l-- 123 (331)
|.++|||++...+...+..+.+.+..+. ..+++..+++.+. +.+.+.+....+.|+ ++++++|+|++++.+
T Consensus 2 ~~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~~~~d~~~~---~~~~~~~~~~~t~pf---f~~~rlVvv~~~~~~~~ 75 (326)
T PRK07452 2 PIYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDDA---DQAIQALNEAMTPPF---GSGGRLVWLKNSPLCQG 75 (326)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhCCchhhhcchhhcCCccc---hHHHHHHHHhcCCCC---CCCceEEEEeCchhhcc
Confidence 5579999999999999999988775432 2345666665443 235666766666676 788999999998654
Q ss_pred -CHHHHHHHHHHHHHhcCCcEEEEeeCCC----CCCChhhhcccceeeecCC---CHHHHHHHHHHHHHhcCCCCCHHHH
Q 020071 124 -TAGAQQALRRTMEIYSNSTRFALACNVS----SKIIEPIQSRCAIVRFSRL---SDEEILSRLMVVVQEEKVPYVPEGL 195 (331)
Q Consensus 124 -~~~~~~~Ll~~le~~~~~~~~I~~~~~~----~~l~~~l~sr~~~i~~~~~---~~~~~~~~l~~~~~~~~~~i~~~~~ 195 (331)
+++..+.|.+++++|++++++|+++... .+..+.+++.+.+..|.++ +.+++..|+.+++++.|+.++++++
T Consensus 76 ~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~ 155 (326)
T PRK07452 76 CSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVERTAQELGVKLTPEAA 155 (326)
T ss_pred CCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 5677889999999999999998875332 3456677778888888765 4577999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhh----CCCccchhhhhhhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHH
Q 020071 196 EAIIFTADGDMRQALNNLQATYS----GFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTD 271 (331)
Q Consensus 196 ~~l~~~~~g~~r~~~~~l~~~~~----~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~ 271 (331)
+.|+..+++|++.+.+++++++. ..+.||.++|.+++... ..++|++++++..++...|+..+++|...|++|..
T Consensus 156 ~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~-~~~if~l~dai~~~~~~~A~~~l~~L~~~g~~p~~ 234 (326)
T PRK07452 156 ELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSNT-TQNSLQLADALLQGNTGKALALLDDLLDANEPALR 234 (326)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccC-cCcHHHHHHHHHCCCHHHHHHHHHHHHHCCCcHHH
Confidence 99999999999999999999854 25579999999998876 57899999999999999999999999999999999
Q ss_pred HHHHHHHHHHh---------------------ccc-ChHh---------------HHHHHHHHHHHHHHHhcCCCchHHH
Q 020071 272 IITTLFRIIKN---------------------YEM-AEHL---------------KLEFMKEAGFAHMRICDGVGSYLQL 314 (331)
Q Consensus 272 i~~~l~~~~~~---------------------~~~-~~~~---------------~~~~~~~l~~~~~~l~~~~~~~l~l 314 (331)
|+..+.+.++. +|+ ++.. +.+++..+.++|+++|++.++...|
T Consensus 235 il~~l~~~~r~l~~~k~~~~~G~~~~~~ia~~lgi~~p~~~~~~~~~~~~~s~~~L~~~l~~L~~~D~~iK~g~~~~~~l 314 (326)
T PRK07452 235 IVATLTGQFRTWLWVKLLVESGERDVKVIAKAAGIGNPKRIYFLRKEVQGLSSQQLLKLLPLLLDLEASLKQGANPINAL 314 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhCCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 99887664332 222 2211 2488999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 020071 315 CGLLAKLSIVRE 326 (331)
Q Consensus 315 ~~l~~~l~~~~~ 326 (331)
|.++.++|++++
T Consensus 315 e~~i~~~~~~~~ 326 (326)
T PRK07452 315 QDKLIELCQLLQ 326 (326)
T ss_pred HHHHHHHHHhhC
Confidence 999999999874
No 75
>PRK07914 hypothetical protein; Reviewed
Probab=99.94 E-value=3.8e-24 Score=189.88 Aligned_cols=271 Identities=10% Similarity=0.076 Sum_probs=225.1
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcC-CC-CCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH
Q 020071 48 NLILAGPPGTGKTTSILALAHELLG-PN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~-~~-~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~ 125 (331)
.++|||++-.........+.+.... ++ ...++..+++.+. .+.+ +..+.+.|+ ++++++|+|+++..+..
T Consensus 7 iYll~G~E~~l~~~~~~~i~~~~~~~~~~~~~n~~~~d~~~~----~~~~-i~~~~t~pl---F~~rRlV~v~~~~~~~~ 78 (320)
T PRK07914 7 LHLVLGDEELLVERAVAAVLRSARQRAGTADVPVSRMRAGDV----STYE-LAELLSPSL---FAEERVVVLEAAAEAGK 78 (320)
T ss_pred eEEEEecHHHHHHHHHHHHHHHHhcCcCCCCCceEEeccccC----CHHH-HHHhcCCCC---CCCceEEEEeChHhccH
Confidence 3699999998888888888877654 23 3567788877665 2344 455556666 89999999999987777
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeeCCC---CCCChhhhccc-ceeeecCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 020071 126 GAQQALRRTMEIYSNSTRFALACNVS---SKIIEPIQSRC-AIVRFSRL-SDEEILSRLMVVVQEEKVPYVPEGLEAIIF 200 (331)
Q Consensus 126 ~~~~~Ll~~le~~~~~~~~I~~~~~~---~~l~~~l~sr~-~~i~~~~~-~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~ 200 (331)
+..+.|..++++|++.+++|++++.. .++.++++... .++.|.|+ +..++..|+.+++++.|+.+++++++.|+.
T Consensus 79 ~~~~~l~~~l~~~~~~t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~wi~~~a~~~g~~i~~~A~~~L~~ 158 (320)
T PRK07914 79 DAAALILSAAADLPPGTVLVVVHSGGGRAKALANQLRKLGAEVHPCARITKAAERADFVRKEFRSLRVKVDDDTVTALLD 158 (320)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 77889999999999988888875432 34556787775 58899999 999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHhh-CCCccchhhhhhhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 020071 201 TADGDMRQALNNLQATYS-GFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRI 279 (331)
Q Consensus 201 ~~~g~~r~~~~~l~~~~~-~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~ 279 (331)
+.++|+..+.+++++++. .++.||.++|.+++....+.++|++++++..++..+|+..+.+|...|++|..|+..+.+.
T Consensus 159 ~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~vf~L~dAi~~g~~~~A~~~l~~L~~~ge~p~~il~~l~~~ 238 (320)
T PRK07914 159 AVGSDLRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDVAGAAEALRWAMMRGEPHVVLADALAEA 238 (320)
T ss_pred HHCccHHHHHHHHHHHhcCCCCCcCHHHHHHHcCCCeechHHHHHHHHHCCCHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 999999999999999864 4568999999999999999999999999999999999999999999999999998887664
Q ss_pred HHh-----------------cccC---------------hHhHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHh
Q 020071 280 IKN-----------------YEMA---------------EHLKLEFMKEAGFAHMRICDG-VGSYLQLCGLLAKLSIVRE 326 (331)
Q Consensus 280 ~~~-----------------~~~~---------------~~~~~~~~~~l~~~~~~l~~~-~~~~l~l~~l~~~l~~~~~ 326 (331)
++. ++++ ...+.+++..+.++|..+|++ .++.+.||.++++++++..
T Consensus 239 ~r~L~~~k~~~~~~~~i~~~l~i~p~~~~~~~~~~~~~s~~~L~~~l~~l~~~D~~lK~~~~~~~~~lE~~i~~~~~~~~ 318 (320)
T PRK07914 239 VHTIARVGPLSGDPYRLAGELGMPPWRVQKAQKQARRWSRDTVATAMRVVAALNADVKGAAADADYALESAVRRVAELVA 318 (320)
T ss_pred HHHHHHHHHhcCCHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhc
Confidence 432 2222 222358999999999999976 5999999999999998653
No 76
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.94 E-value=1.4e-25 Score=210.37 Aligned_cols=223 Identities=23% Similarity=0.274 Sum_probs=171.9
Q ss_pred CCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCC---C--CCCceEEeecCC
Q 020071 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP---N--YREAVMELNASD 86 (331)
Q Consensus 12 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~---~--~~~~~~~~~~~~ 86 (331)
+.||.+||||.+|++++|++..++.++..+......|++|+||+|+|||++|+.+++..... . ...+++++++..
T Consensus 52 ~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~ 131 (531)
T TIGR02902 52 TEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATT 131 (531)
T ss_pred cchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccc
Confidence 45999999999999999999999999988877777789999999999999999998754321 1 135788888753
Q ss_pred CC-ChHhHHH-HHHH----HHh-------c------ccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh---------
Q 020071 87 DR-GIDVVRN-KIKM----FAQ-------K------KVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY--------- 138 (331)
Q Consensus 87 ~~-~~~~i~~-~i~~----~~~-------~------~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~--------- 138 (331)
.. ....+.+ .+.. ... . +-......+++++|||++.|+...|+.|+++||+.
T Consensus 132 ~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~ 211 (531)
T TIGR02902 132 ARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYY 211 (531)
T ss_pred ccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccc
Confidence 21 1011111 1100 000 0 00011345689999999999999999999999852
Q ss_pred -------------------cCCcEEEEee-CCCCCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 020071 139 -------------------SNSTRFALAC-NVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAI 198 (331)
Q Consensus 139 -------------------~~~~~~I~~~-~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l 198 (331)
+.++++|++| +++..+++++++||..+.|+|++.+++..+++..+++.++.+++++++.|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I 291 (531)
T TIGR02902 212 NSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELI 291 (531)
T ss_pred cccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHH
Confidence 2345676665 45789999999999999999999999999999999999999999999998
Q ss_pred HHhcCCCHHHHHHHHHHHh-----hCCCccchhhhhhhcCCC
Q 020071 199 IFTADGDMRQALNNLQATY-----SGFRFVNQENVFKVCDQP 235 (331)
Q Consensus 199 ~~~~~g~~r~~~~~l~~~~-----~~~~~i~~~~v~~~~~~~ 235 (331)
..++. |.|.+.+.++.++ .+...|+.+++..++...
T Consensus 292 ~~y~~-n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 292 VKYAS-NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENG 332 (531)
T ss_pred HHhhh-hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCc
Confidence 88775 8999999998764 234579999999887653
No 77
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.93 E-value=1.4e-23 Score=173.60 Aligned_cols=200 Identities=19% Similarity=0.221 Sum_probs=162.3
Q ss_pred hhhhcCCCCCCccccCHHHHHHHHHHHHc-----CCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCC
Q 020071 15 WVEKYRPTKVCDIVGNLDAVARLGIIARD-----GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRG 89 (331)
Q Consensus 15 ~~~~~~p~~~~~~ig~~~~~~~l~~~l~~-----~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 89 (331)
.....||+.|+|++||+++++.|.-+++. ..+.|+|||||||.||||+|..+++++ +.++....++....
T Consensus 16 ~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-----gvn~k~tsGp~leK 90 (332)
T COG2255 16 IERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-----GVNLKITSGPALEK 90 (332)
T ss_pred hhcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-----cCCeEecccccccC
Confidence 56678999999999999999988766653 356789999999999999999999999 66666655555544
Q ss_pred hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc------------------CCcEEEEeeCCC
Q 020071 90 IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS------------------NSTRFALACNVS 151 (331)
Q Consensus 90 ~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~------------------~~~~~I~~~~~~ 151 (331)
..++..++.. -.++.|+||||+|++++...+.|...||++. +...+|.+|+..
T Consensus 91 ~gDlaaiLt~---------Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~ 161 (332)
T COG2255 91 PGDLAAILTN---------LEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRA 161 (332)
T ss_pred hhhHHHHHhc---------CCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecccc
Confidence 4444444432 2357799999999999999999999999532 234578888888
Q ss_pred CCCChhhhcccce-eeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH-----hhCCCccch
Q 020071 152 SKIIEPIQSRCAI-VRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT-----YSGFRFVNQ 225 (331)
Q Consensus 152 ~~l~~~l~sr~~~-i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~-----~~~~~~i~~ 225 (331)
..+..++++||.+ .++.-++.+|+..++.+-++.-++.++++++..|++++.|.+|-|.++|... ..+...|+.
T Consensus 162 G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V~~~~~I~~ 241 (332)
T COG2255 162 GMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVRDFAQVKGDGDIDR 241 (332)
T ss_pred ccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhcCCcccH
Confidence 9999999999865 4888899999999999999999999999999999999999999999999754 244455554
Q ss_pred hhh
Q 020071 226 ENV 228 (331)
Q Consensus 226 ~~v 228 (331)
+.+
T Consensus 242 ~ia 244 (332)
T COG2255 242 DIA 244 (332)
T ss_pred HHH
Confidence 433
No 78
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.93 E-value=7.7e-24 Score=187.47 Aligned_cols=197 Identities=19% Similarity=0.251 Sum_probs=155.2
Q ss_pred CCCCccccCHHHHHHHHHHHH-----cCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHH
Q 020071 22 TKVCDIVGNLDAVARLGIIAR-----DGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNK 96 (331)
Q Consensus 22 ~~~~~~ig~~~~~~~l~~~l~-----~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 96 (331)
++|++++|+++.+..|..++. .+..+|++|+||+|+|||++|+.+++.+. ..+...+.........+.+.
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~-----~~~~~~~~~~~~~~~~l~~~ 75 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG-----VNLKITSGPALEKPGDLAAI 75 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC-----CCEEEeccchhcCchhHHHH
Confidence 478999999999999998887 34556799999999999999999999983 34444443332233333333
Q ss_pred HHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc------------------CCcEEEEeeCCCCCCChhh
Q 020071 97 IKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS------------------NSTRFALACNVSSKIIEPI 158 (331)
Q Consensus 97 i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~------------------~~~~~I~~~~~~~~l~~~l 158 (331)
+.. .+...+++|||+|.++...++.|+.++++.. +.+.+|.+++....+.+++
T Consensus 76 l~~---------~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l 146 (305)
T TIGR00635 76 LTN---------LEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPL 146 (305)
T ss_pred HHh---------cccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHH
Confidence 322 1345799999999999999999998887432 2366788888888999999
Q ss_pred hcccc-eeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-----hCCCccchhhhhhhc
Q 020071 159 QSRCA-IVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-----SGFRFVNQENVFKVC 232 (331)
Q Consensus 159 ~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-----~~~~~i~~~~v~~~~ 232 (331)
++||. .+.|.|++.+++.+++++.+...++.+++++++.+++.++|++|.+.+.++.+. .+...|+.+.+...+
T Consensus 147 ~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l 226 (305)
T TIGR00635 147 RDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKAL 226 (305)
T ss_pred HhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 99994 579999999999999999999999999999999999999999999998887652 233557777776544
No 79
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=99.92 E-value=3.8e-22 Score=179.34 Aligned_cols=283 Identities=12% Similarity=0.101 Sum_probs=224.3
Q ss_pred HHHHHHc--CCCCeEEEeCCCCccHHHHHHHHHHHhcCCC-CCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCce
Q 020071 37 LGIIARD--GNMPNLILAGPPGTGKTTSILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHK 113 (331)
Q Consensus 37 l~~~l~~--~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~ 113 (331)
+...+.. +..|.++|||++.......+..+.+.+...+ ..+++..+++.+.. ..+.+.+..+.+.++ +++++
T Consensus 9 ~~~~l~~~~~~~~~yll~G~e~~li~~~~~~l~~~~~~~~~~~fn~~~~~~~e~~--~~~~~~~~~~~t~sl---F~~~r 83 (343)
T PRK06585 9 VDRFLARPDPKIRAVLLYGPDRGLVRERARRLAKSVVPDLDDPFAVVRLDGDDLD--ADPARLEDEANAISL---FGGRR 83 (343)
T ss_pred HHHHHhCCCCCCeEEEEeCCchHHHHHHHHHHHHHhcCCCCCCcceeeccHHHhh--cCHHHHHHHHhCCCC---CCCce
Confidence 3444443 3445579999999999999999988875432 23455555543321 126677788888887 89999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC---CCCChhhh--cccceeeecCCCHHHHHHHHHHHHHhcCC
Q 020071 114 VVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVS---SKIIEPIQ--SRCAIVRFSRLSDEEILSRLMVVVQEEKV 188 (331)
Q Consensus 114 vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~---~~l~~~l~--sr~~~i~~~~~~~~~~~~~l~~~~~~~~~ 188 (331)
+|+|++++ ....+.|..+++.|++++++|+.+... .++.+.+. ..+..+.|.+++..++..|+.+++++.|+
T Consensus 84 lViv~~~~---~~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~ 160 (343)
T PRK06585 84 LIWVRAGS---KNLAAALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDERDLARLIDDELAEAGL 160 (343)
T ss_pred EEEEECCc---hhHHHHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHHHHCCC
Confidence 99999654 345678999999999889888876543 23334342 23566799999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHHHhh---CCCccchhhhhhhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 020071 189 PYVPEGLEAIIFTADGDMRQALNNLQATYS---GFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDL 265 (331)
Q Consensus 189 ~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~---~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~ 265 (331)
.++++++++|++.++||++.+.+++++++. +.+.||.++|.+++....+.++|++++++..++...|+..+..|+..
T Consensus 161 ~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~if~l~dai~~~~~~~a~~~l~~ll~~ 240 (343)
T PRK06585 161 RITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAADAALAGDLAAFERALDRALAE 240 (343)
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999853 34679999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc---------c----------------------------cChHhHHHHHHHHHHHHHHHhcCC
Q 020071 266 GYSPTDIITTLFRIIKNY---------E----------------------------MAEHLKLEFMKEAGFAHMRICDGV 308 (331)
Q Consensus 266 g~~~~~i~~~l~~~~~~~---------~----------------------------~~~~~~~~~~~~l~~~~~~l~~~~ 308 (331)
|++|..|+..+.+.++.+ | ++...+.+++..+.++|.+++++.
T Consensus 241 g~~p~~il~~L~~~~r~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~ 320 (343)
T PRK06585 241 GTAPVLILRAALRHFQRLHIVRLKVENGKSAEQAIASLRPPVFFKRKPDFEKALRRWSLERLLRALERLQAAELDCRRNP 320 (343)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhCCCCCcchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999887755431 1 111112489999999999999766
Q ss_pred -CchHHHHHHHHHHHHHHhh
Q 020071 309 -GSYLQLCGLLAKLSIVRET 327 (331)
Q Consensus 309 -~~~l~l~~l~~~l~~~~~~ 327 (331)
++.+.+|.+++++|....+
T Consensus 321 ~~~~~~le~~i~~~~~~~~~ 340 (343)
T PRK06585 321 ALADAIARRVLLSIAVRARR 340 (343)
T ss_pred CcHHHHHHHHHHHHHHHHHh
Confidence 8889999999999976554
No 80
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=99.92 E-value=2.3e-22 Score=179.00 Aligned_cols=280 Identities=15% Similarity=0.177 Sum_probs=225.4
Q ss_pred HHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCce
Q 020071 35 ARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHK 113 (331)
Q Consensus 35 ~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~ 113 (331)
..+.+.++++.+++ ++|||++-.-.......+.+.+..++.... +.++ + ..+.+.+..+.+.|+ +++++
T Consensus 4 ~~l~~~lk~~~l~~vyll~GeE~yli~~~~~~i~~~~~~~~~~~~-~~~~--~----~~~~~i~~~~~t~pl---F~~~r 73 (328)
T PRK08487 4 KELDTLLKQNKLPNAFLLYGEDEFQIELYAKKISEKFKPENELKT-LYFD--E----YDFEQAKDFLSQSSL---FGGKN 73 (328)
T ss_pred HHHHHHHhcCCCCceEEEecCchhHHHHHHHHHHHHhcCchHhhh-hchh--h----ccHHHHHHHHhcccc---cCCce
Confidence 46777888887766 699999999999999999887754332221 2222 1 246778888888887 89999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCC---CCChhhhcc--cceeeecCCCHHHHHHHHHHHHHhcCC
Q 020071 114 VVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSS---KIIEPIQSR--CAIVRFSRLSDEEILSRLMVVVQEEKV 188 (331)
Q Consensus 114 vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~---~l~~~l~sr--~~~i~~~~~~~~~~~~~l~~~~~~~~~ 188 (331)
+|+|+++..+.....+.|..+++.|++.+++|++..... ++.+.+... +..+.|.++++.++..|+.+++++.|+
T Consensus 74 lViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~~~~~~l~~~i~~~~~~~g~ 153 (328)
T PRK08487 74 LLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFKPNAREALELLQERAKELGL 153 (328)
T ss_pred EEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 999999877777677899999999988777776544332 222333333 567899999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCCccchhhhhhhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 020071 189 PYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYS 268 (331)
Q Consensus 189 ~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~ 268 (331)
.++++++++|+..+++|+..+.++++++....+.||.++|..++....+.++|++++++..++ .++..+.+|...|++
T Consensus 154 ~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~~It~edV~~~v~~~~e~~vF~l~dai~~g~--~a~~~l~~L~~~g~~ 231 (328)
T PRK08487 154 DIDQNALNHLYFIHNEDLALAANELEKLAILNEPITLKDIQELVFGLGSVSFEDFFEKLLNKK--DIKDDLEKLLEEGFN 231 (328)
T ss_pred CCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCCHHHHHHHhcccccccHHHHHHHHHCCC--cHHHHHHHHHHCCCC
Confidence 999999999999999999999999999876566899999999999999999999999999988 578899999999999
Q ss_pred HHHHHHHHHHHHHhc-------------------cc--ChH---------------hHHHHHHHHHHHHHHHhcCC--Cc
Q 020071 269 PTDIITTLFRIIKNY-------------------EM--AEH---------------LKLEFMKEAGFAHMRICDGV--GS 310 (331)
Q Consensus 269 ~~~i~~~l~~~~~~~-------------------~~--~~~---------------~~~~~~~~l~~~~~~l~~~~--~~ 310 (331)
|..|++.+.+.++.+ ++ |+. .+.+++..+.++|+.+++|. +.
T Consensus 232 pi~Il~~L~r~~~~L~~i~~~~~~~~~~~~a~~~~~~~~~f~~~~~~~q~~~~s~~~L~~~l~~L~e~D~~lK~g~~~~~ 311 (328)
T PRK08487 232 EIALLNSLERFFYQLFLFFAYIKINGKPDAKEILGYKPPKQIAENLAKQAIKIKEAQYKEIFELLLEWELELKTGQKIDK 311 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHhCCCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCccH
Confidence 999998887754331 22 111 12489999999999999874 77
Q ss_pred hHHHHHHHHHHHHHHh
Q 020071 311 YLQLCGLLAKLSIVRE 326 (331)
Q Consensus 311 ~l~l~~l~~~l~~~~~ 326 (331)
.+.++..++++..+++
T Consensus 312 ~~~~~~~~~~~~~~~~ 327 (328)
T PRK08487 312 NLFLLSTLIKIQKILN 327 (328)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7888999999988764
No 81
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.92 E-value=2.9e-23 Score=190.78 Aligned_cols=204 Identities=27% Similarity=0.403 Sum_probs=174.8
Q ss_pred chhhhcCCCCCCccccCHHHHHHHHHHHHc--------------------------------CCCCe--EEEeCCCCccH
Q 020071 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARD--------------------------------GNMPN--LILAGPPGTGK 59 (331)
Q Consensus 14 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~--------------------------------~~~~~--~ll~G~~G~GK 59 (331)
.|.++|+|+.|.|++|.+..-+.+..|++. ++++. +||+||||.||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 699999999999999999999988888764 22333 69999999999
Q ss_pred HHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcccCC-CCCCceEEEEeCCCCCCHHHHHHHHHHHHH-
Q 020071 60 TTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTL-PPGKHKVVVLDEADSMTAGAQQALRRTMEI- 137 (331)
Q Consensus 60 t~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~-~~~~~~vviide~d~l~~~~~~~Ll~~le~- 137 (331)
||+|+.+|+.. +..++++|+++.+....+.+.+..+.+..... ..+++..+||||+|.-...+.+.++..++.
T Consensus 340 TTLAHViAkqa-----GYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~Vdvilslv~a~ 414 (877)
T KOG1969|consen 340 TTLAHVIAKQA-----GYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAVDVILSLVKAT 414 (877)
T ss_pred hHHHHHHHHhc-----CceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHHHHHHHHHHHHhh
Confidence 99999999998 89999999999999999999998888766554 346789999999999999999999998871
Q ss_pred -----hc---------------CCcEEEEeeCCCC-CCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHH
Q 020071 138 -----YS---------------NSTRFALACNVSS-KIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLE 196 (331)
Q Consensus 138 -----~~---------------~~~~~I~~~~~~~-~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~ 196 (331)
.+ -.-.+|++||+.. --+..|+--|.++.|.|++..-+.+.|+.+|.++|...+..++.
T Consensus 415 ~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~ 494 (877)
T KOG1969|consen 415 NKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALN 494 (877)
T ss_pred cchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHH
Confidence 11 1235899999853 23355666689999999999999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHhhCCCc
Q 020071 197 AIIFTADGDMRQALNNLQATYSGFRF 222 (331)
Q Consensus 197 ~l~~~~~g~~r~~~~~l~~~~~~~~~ 222 (331)
.|++++.+|+|.++|.||.++.+.+.
T Consensus 495 ~L~el~~~DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 495 ALCELTQNDIRSCINTLQFLASNVDR 520 (877)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhccc
Confidence 99999999999999999999865544
No 82
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.91 E-value=8.2e-23 Score=170.85 Aligned_cols=161 Identities=12% Similarity=0.112 Sum_probs=130.8
Q ss_pred CCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC-----------------CCceEEeecC-CCCChHhHHHHHHHHHhccc
Q 020071 45 NMPN-LILAGPPGTGKTTSILALAHELLGPNY-----------------REAVMELNAS-DDRGIDVVRNKIKMFAQKKV 105 (331)
Q Consensus 45 ~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~-----------------~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~~ 105 (331)
..|| +||+||+|+||..+|.++++.+.|+.. +.++..+.+. ...+++++++..+.+...++
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 4577 799999999999999999999998631 1234433322 24678899999888776553
Q ss_pred CCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccceeeecCC----------CHHHH
Q 020071 106 TLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRL----------SDEEI 175 (331)
Q Consensus 106 ~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~~i~~~~~----------~~~~~ 175 (331)
..++++|+|||++|+|+.+++|+|++++||||+++.||++|++++.+++|++|||+.+.|+++ ++.++
T Consensus 85 --e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~~~~~i 162 (261)
T PRK05818 85 --ESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVESNDRYF 162 (261)
T ss_pred --hcCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhcccccccChHHH
Confidence 125689999999999999999999999999999999999999999999999999999999888 55666
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 020071 176 LSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT 216 (331)
Q Consensus 176 ~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~ 216 (331)
.+.+... . .+++ .++..++|++.++...++.+
T Consensus 163 ~~~L~~~---~--~~d~----~i~~~a~g~~~~a~~l~~~l 194 (261)
T PRK05818 163 QYILLSF---Y--SVDE----QLQAYNNGSFSKLKNIIETL 194 (261)
T ss_pred HHHHHHc---c--CccH----HHHHHcCCCHHHHHHHHHHH
Confidence 6666542 2 2444 67788899999999998854
No 83
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=99.90 E-value=2.3e-21 Score=171.51 Aligned_cols=254 Identities=16% Similarity=0.168 Sum_probs=206.6
Q ss_pred HHHHHHHHhcCCCC-CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC-HHHHHHHHHHHHHhc
Q 020071 62 SILALAHELLGPNY-REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT-AGAQQALRRTMEIYS 139 (331)
Q Consensus 62 la~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~-~~~~~~Ll~~le~~~ 139 (331)
.+..+.+.+..+++ ..+++.+++.+. .+.+........++ ++++++|+|++++.+. ....+.|.+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~e~----~~~~l~~~~~~~sl---f~~~kliii~~~~~~~~~~~~~~L~~~l~~~~ 75 (302)
T TIGR01128 3 AADAIRAAALAQGFDEFNVFRIDGEEF----DWNQLLEEAQTLPL---FSERRLVELRNPEGKPGAKGLKALEEYLANPP 75 (302)
T ss_pred HHHHHHHHHHhCCCchheeeeeccCCC----CHHHHHHHhhccCc---ccCCeEEEEECCCCCCCHHHHHHHHHHHhcCC
Confidence 34555555543332 466777776655 34446666666766 7889999999999986 456799999999999
Q ss_pred CCcEEEEeeCCCC---CCChhhh--cccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 020071 140 NSTRFALACNVSS---KIIEPIQ--SRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQ 214 (331)
Q Consensus 140 ~~~~~I~~~~~~~---~l~~~l~--sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~ 214 (331)
+++.+|++++... ++.+.+. ++|.++.|.+++..++..|+...+++.|+.++++++++++..++||++.+.++++
T Consensus 76 ~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el~ 155 (302)
T TIGR01128 76 PDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQELE 155 (302)
T ss_pred CCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHHHHHHHH
Confidence 9999888887543 2223344 4999999999999999999999999999999999999999999999999999999
Q ss_pred HHhh--CCCccchhhhhhhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---------
Q 020071 215 ATYS--GFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY--------- 283 (331)
Q Consensus 215 ~~~~--~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~--------- 283 (331)
+++. +.+.||.++|..++....+..++++++++..++...++..++.|...|++|..|+..+.+.++.+
T Consensus 156 KL~~~~~~~~It~e~I~~~~~~~~~~~if~l~dal~~~~~~~a~~~l~~l~~~~~~~~~il~~l~~~~~~L~~~k~~~~~ 235 (302)
T TIGR01128 156 KLALYAPDGKITLEDVEEAVSDSARFNVFDLTDALLEGKAARALRILKGLLGEGEEPLILLALLQRQLRLLLQLKRLAQQ 235 (302)
T ss_pred HHHhhCCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9863 34579999999999988888999999999999999999999999999999999998877644431
Q ss_pred -----------ccC---------------hHhHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHH
Q 020071 284 -----------EMA---------------EHLKLEFMKEAGFAHMRICD--GVGSYLQLCGLLAKLS 322 (331)
Q Consensus 284 -----------~~~---------------~~~~~~~~~~l~~~~~~l~~--~~~~~l~l~~l~~~l~ 322 (331)
+++ ...+..++..+.+++..++. +.++.+.||.++.++|
T Consensus 236 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~L~~~l~~l~~~d~~~K~~~~~~~~~~le~~i~~~~ 302 (302)
T TIGR01128 236 GGPLAQLASKLGIWPYRRKLALKALRRLSLAKLEQALQELAEADLQLKGTGGGDPWLALERLLLKLA 302 (302)
T ss_pred CCCHHHHHHHcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHhC
Confidence 111 22235889999999999993 6699999999999986
No 84
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=99.90 E-value=7.6e-21 Score=171.01 Aligned_cols=281 Identities=14% Similarity=0.127 Sum_probs=219.5
Q ss_pred HHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCC-CCCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCc
Q 020071 35 ARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGP-NYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH 112 (331)
Q Consensus 35 ~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~ 112 (331)
..+.+.++++ +++ ++|||+.-.-+...+..+.+.+..+ ....++..+++.+. .+.+.+..+.+.++ ++++
T Consensus 6 ~~~~~~~~~~-~~~~~li~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~----~~~~l~~~~~t~~l---F~~~ 77 (340)
T PRK05574 6 EQLEKQLKKG-LAPLYLLYGDEPLLLQEAKDAIRAAARAQGFDERNVFTFDGSET----DWDDVLEACQSLPL---FSDR 77 (340)
T ss_pred HHHHHHHhCC-CCceEEEEcCcHHHHHHHHHHHHHHHHcCCCceeeEEEeecCCC----CHHHHHHHhhccCc---cccC
Confidence 3455667666 555 7999999777777777777765332 23445566665544 36667777777777 7899
Q ss_pred eEEEEeCCCCCCHHH----HHHHHHHHHHhcC--CcEEEEeeCCC---CCC---ChhhhcccceeeecCCCHHHHHHHHH
Q 020071 113 KVVVLDEADSMTAGA----QQALRRTMEIYSN--STRFALACNVS---SKI---IEPIQSRCAIVRFSRLSDEEILSRLM 180 (331)
Q Consensus 113 ~vviide~d~l~~~~----~~~Ll~~le~~~~--~~~~I~~~~~~---~~l---~~~l~sr~~~i~~~~~~~~~~~~~l~ 180 (331)
++|+|++++.+.... ...|..++ +|++ ..++++.++.. .++ .+++.+++.++.|.+++..++..|+.
T Consensus 78 klvii~~~~~l~~~~~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~~~~~~~~~~~~~~~~~i~ 156 (340)
T PRK05574 78 KLVELRLPEFLTGAKGEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKAVVVEAQPPKEAELPQWIQ 156 (340)
T ss_pred eEEEEECCCCCCchhHHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCceEEEcCCCCHHHHHHHHH
Confidence 999999999986542 33444444 4444 34455554432 233 67888899999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhh--CCCccchhhhhhhcCCCCHHHHHHHHHHHHcCCHHHHHHH
Q 020071 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS--GFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSG 258 (331)
Q Consensus 181 ~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~--~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~ 258 (331)
..+++.|+.++++++++|++.++||++.+.+++++++. +.+.||.++|.+++....+..++++++++..++...++..
T Consensus 157 ~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~~~~~f~l~dai~~~~~~~a~~~ 236 (340)
T PRK05574 157 QRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSARFDVFDLVDAILAGKIKRALRI 236 (340)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999863 2334999999999999888999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHh--------------------ccc---------------ChHhHHHHHHHHHHHHHH
Q 020071 259 LKQLYDLGYSPTDIITTLFRIIKN--------------------YEM---------------AEHLKLEFMKEAGFAHMR 303 (331)
Q Consensus 259 l~~l~~~g~~~~~i~~~l~~~~~~--------------------~~~---------------~~~~~~~~~~~l~~~~~~ 303 (331)
+..|...|.++..|+..+.+.++. +++ +...+.+++..+.+++.+
T Consensus 237 l~~l~~~~~~~~~il~~l~~~~~~l~~~k~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~L~~~l~~L~~~d~~ 316 (340)
T PRK05574 237 LDGLRLEGEEPIKLLAALQREFRLLLQLKILSQQGYPLQQLAKELRVWPYRVKLALRALQRLSLKQLKQAIQLLAETDYQ 316 (340)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCChhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999887664432 112 222235899999999999
Q ss_pred HhcC--CCchHHHHHHHHHHHHH
Q 020071 304 ICDG--VGSYLQLCGLLAKLSIV 324 (331)
Q Consensus 304 l~~~--~~~~l~l~~l~~~l~~~ 324 (331)
++++ .++.+.||.+++++|+.
T Consensus 317 iK~~~~~~~~~~le~~ii~l~~~ 339 (340)
T PRK05574 317 IKTGYGGDKWLELELLLLKLAGA 339 (340)
T ss_pred HhCCCCCCHHHHHHHHHHHhccC
Confidence 9988 59999999999999864
No 85
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.90 E-value=5.3e-22 Score=168.18 Aligned_cols=209 Identities=16% Similarity=0.121 Sum_probs=153.9
Q ss_pred CCCchhhhcCCC-CCCccc--cCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC
Q 020071 11 YDIPWVEKYRPT-KVCDIV--GNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD 87 (331)
Q Consensus 11 ~~~~~~~~~~p~-~~~~~i--g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (331)
.++|+.-.++|. +|++++ ++..++..+.++......++++||||+|+|||++++++++.+...+....|+.++....
T Consensus 7 ~Ql~l~~~~~~~~~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~ 86 (235)
T PRK08084 7 AQLSLPLYLPDDETFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW 86 (235)
T ss_pred cceecCCCCCCcCCccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh
Confidence 467777666654 788887 46778888888887666667999999999999999999998754433333333332111
Q ss_pred CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHHHhc--CCcEEEEeeCCC-C---CCChhhh
Q 020071 88 RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA--GAQQALRRTMEIYS--NSTRFALACNVS-S---KIIEPIQ 159 (331)
Q Consensus 88 ~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~--~~~~~Ll~~le~~~--~~~~~I~~~~~~-~---~l~~~l~ 159 (331)
...+.++.+. ...+++|||++.+.. ..+..|..++.... .+..+|++++.+ . .+.+.++
T Consensus 87 ----~~~~~~~~~~---------~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~ 153 (235)
T PRK08084 87 ----FVPEVLEGME---------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLA 153 (235)
T ss_pred ----hhHHHHHHhh---------hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHH
Confidence 1112222211 235899999999863 44556666665432 235678877654 2 3579999
Q ss_pred ccc---ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh----hCCCccchhhhhhhc
Q 020071 160 SRC---AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY----SGFRFVNQENVFKVC 232 (331)
Q Consensus 160 sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~----~~~~~i~~~~v~~~~ 232 (331)
||+ .++.+.||+.++..+++++++...|+.++++++++|++.++||+|.+.+.++.+. ...+.||.+.+++++
T Consensus 154 SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~k~~l 233 (235)
T PRK08084 154 SRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 233 (235)
T ss_pred HHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 998 8999999999999999999898899999999999999999999999999998763 245678888777654
No 86
>PRK06893 DNA replication initiation factor; Validated
Probab=99.88 E-value=2.8e-21 Score=163.23 Aligned_cols=209 Identities=15% Similarity=0.138 Sum_probs=147.0
Q ss_pred CCCchhhhcC-CCCCCccccCHHHH--HHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC
Q 020071 11 YDIPWVEKYR-PTKVCDIVGNLDAV--ARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD 87 (331)
Q Consensus 11 ~~~~~~~~~~-p~~~~~~ig~~~~~--~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (331)
|++|+.-.++ +.+|+++++++... ..+.+.......|.++||||+|+|||++++++++++...+....|+..+....
T Consensus 1 ~Ql~l~~~~~~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~ 80 (229)
T PRK06893 1 MQLPLPIHQIDDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY 80 (229)
T ss_pred CCcccCCCCCCcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh
Confidence 5667777666 45999999765543 23333333444455899999999999999999998755433333444332111
Q ss_pred CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHHHhcC--CcEEEEeeCCC-C---CCChhhh
Q 020071 88 RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT--AGAQQALRRTMEIYSN--STRFALACNVS-S---KIIEPIQ 159 (331)
Q Consensus 88 ~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~--~~~~~~Ll~~le~~~~--~~~~I~~~~~~-~---~l~~~l~ 159 (331)
. ..+.++. ..+..+++|||++.+. ...+..|..+++.... ..++|++++.. . ...+.++
T Consensus 81 ~----~~~~~~~---------~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~ 147 (229)
T PRK06893 81 F----SPAVLEN---------LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLA 147 (229)
T ss_pred h----hHHHHhh---------cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHH
Confidence 1 1112211 1235799999999875 3345577777765432 23445666553 2 3458999
Q ss_pred cccc---eeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh----hCCCccchhhhhhhc
Q 020071 160 SRCA---IVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY----SGFRFVNQENVFKVC 232 (331)
Q Consensus 160 sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~----~~~~~i~~~~v~~~~ 232 (331)
||+. ++.+.+|+.++..+++++.+...++.++++++++|++.++||+|.+.+.++.+. ...+.||.+.+++++
T Consensus 148 sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~v~~~L 227 (229)
T PRK06893 148 SRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLLDKASLQAQRKLTIPFVKEIL 227 (229)
T ss_pred HHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHh
Confidence 9975 889999999999999999999999999999999999999999999999998663 224568887777654
No 87
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.88 E-value=2.2e-21 Score=182.76 Aligned_cols=207 Identities=19% Similarity=0.269 Sum_probs=141.2
Q ss_pred CCCCCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-----EEEeCCCCccHHHHHHHHHHHhcCCC--CCCceEE
Q 020071 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-----LILAGPPGTGKTTSILALAHELLGPN--YREAVME 81 (331)
Q Consensus 9 ~~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-----~ll~G~~G~GKt~la~~l~~~l~~~~--~~~~~~~ 81 (331)
.+...||.+||||..+++++||++.+..+..++.....++ ++|+||+|+|||++++.+++.+.... |..++-.
T Consensus 68 ~~~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~ 147 (637)
T TIGR00602 68 LDGNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLP 147 (637)
T ss_pred ccccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhh
Confidence 4566799999999999999999999999999998765433 79999999999999999999874321 0000000
Q ss_pred eecCC---------------CCChHhHHHHHHHHHhcc-c--CCCCCCceEEEEeCCCCCCHH---HHHHHHH--HHHHh
Q 020071 82 LNASD---------------DRGIDVVRNKIKMFAQKK-V--TLPPGKHKVVVLDEADSMTAG---AQQALRR--TMEIY 138 (331)
Q Consensus 82 ~~~~~---------------~~~~~~i~~~i~~~~~~~-~--~~~~~~~~vviide~d~l~~~---~~~~Ll~--~le~~ 138 (331)
..... ....+.+.+.+..+.... . ....++++||+|||++.+... .+..++. +.+
T Consensus 148 ~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e-- 225 (637)
T TIGR00602 148 DFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVS-- 225 (637)
T ss_pred cccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhc--
Confidence 00000 112334444444433110 0 001346789999999766432 2333333 222
Q ss_pred cCCcEEEEeeCCC-C--------------CCChhhhc--ccceeeecCCCHHHHHHHHHHHHHhcCCC------C-CHHH
Q 020071 139 SNSTRFALACNVS-S--------------KIIEPIQS--RCAIVRFSRLSDEEILSRLMVVVQEEKVP------Y-VPEG 194 (331)
Q Consensus 139 ~~~~~~I~~~~~~-~--------------~l~~~l~s--r~~~i~~~~~~~~~~~~~l~~~~~~~~~~------i-~~~~ 194 (331)
...+.+|+++++. . .+.+.+++ |+.++.|.|++..++.+.|.+++..++.. + ++++
T Consensus 226 ~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~ 305 (637)
T TIGR00602 226 IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTS 305 (637)
T ss_pred CCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHH
Confidence 2356677766531 1 13368887 56779999999999999999999876432 2 4678
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHh
Q 020071 195 LEAIIFTADGDMRQALNNLQATY 217 (331)
Q Consensus 195 ~~~l~~~~~g~~r~~~~~l~~~~ 217 (331)
+..|+..++||+|.|++.|+.++
T Consensus 306 l~~I~~~s~GDiRsAIn~LQf~~ 328 (637)
T TIGR00602 306 VELLCQGCSGDIRSAINSLQFSS 328 (637)
T ss_pred HHHHHHhCCChHHHHHHHHHHHH
Confidence 99999999999999999999875
No 88
>PRK08727 hypothetical protein; Validated
Probab=99.88 E-value=9e-21 Score=160.48 Aligned_cols=209 Identities=17% Similarity=0.208 Sum_probs=150.3
Q ss_pred CCchhhhcCCC-CCCccccC-HHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCC
Q 020071 12 DIPWVEKYRPT-KVCDIVGN-LDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRG 89 (331)
Q Consensus 12 ~~~~~~~~~p~-~~~~~ig~-~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 89 (331)
++|+.-.++|. +|+++++. ......+.....+.....++|+||+|+|||+++.+++..+...+. .+..++..+.
T Consensus 5 Ql~l~~~~~~~~~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~--~~~y~~~~~~-- 80 (233)
T PRK08727 5 QLPLALRYPSDQRFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGR--SSAYLPLQAA-- 80 (233)
T ss_pred CccccCCCCCcCChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC--cEEEEeHHHh--
Confidence 77888888765 89998754 444445544443333334899999999999999999998754433 3344443221
Q ss_pred hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHHHhc-CCcEEEEeeCCC-C---CCChhhhcc-
Q 020071 90 IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT--AGAQQALRRTMEIYS-NSTRFALACNVS-S---KIIEPIQSR- 161 (331)
Q Consensus 90 ~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~--~~~~~~Ll~~le~~~-~~~~~I~~~~~~-~---~l~~~l~sr- 161 (331)
...+.+.++.+ ....+++|||++.+. ...+..+..++.... ....+|++++.. . .+.+.++||
T Consensus 81 ~~~~~~~~~~l---------~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl 151 (233)
T PRK08727 81 AGRLRDALEAL---------EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL 151 (233)
T ss_pred hhhHHHHHHHH---------hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHH
Confidence 11222232221 234599999999885 345667777776532 345688888764 3 357999999
Q ss_pred --cceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh----hCCCccchhhhhhhcC
Q 020071 162 --CAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY----SGFRFVNQENVFKVCD 233 (331)
Q Consensus 162 --~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~----~~~~~i~~~~v~~~~~ 233 (331)
|.++.|+||+.+++..++++++...++.++++++++|++.++||+|.+++.++.+. ...+.||.+.+++++.
T Consensus 152 ~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~~~~~~it~~~~~~~l~ 229 (233)
T PRK08727 152 AQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKRRVTVPFLRRVLE 229 (233)
T ss_pred hcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999999988887653 2345677777766543
No 89
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.88 E-value=2.2e-21 Score=158.58 Aligned_cols=202 Identities=22% Similarity=0.247 Sum_probs=151.6
Q ss_pred hhcCCCCCCccccCHHHHHH---HHHHHHc------CCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC
Q 020071 17 EKYRPTKVCDIVGNLDAVAR---LGIIARD------GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD 87 (331)
Q Consensus 17 ~~~~p~~~~~~ig~~~~~~~---l~~~l~~------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (331)
+-.+..+|+|++||++++.. +.+.+++ +.+.++|||||||+|||.+|++++.+. ..+++.+++...
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~-----kvp~l~vkat~l 187 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA-----KVPLLLVKATEL 187 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc-----CCceEEechHHH
Confidence 44556689999999999974 4555554 455669999999999999999999998 788888887765
Q ss_pred CCh------HhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC------------HHHHHHHHHHHHHh--cCCcEEEEe
Q 020071 88 RGI------DVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT------------AGAQQALRRTMEIY--SNSTRFALA 147 (331)
Q Consensus 88 ~~~------~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~------------~~~~~~Ll~~le~~--~~~~~~I~~ 147 (331)
.|. .++++....+.+. -+.|+||||+|.+. .+..|+|+.-|+.. ...++.|.+
T Consensus 188 iGehVGdgar~Ihely~rA~~~-------aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 188 IGEHVGDGARRIHELYERARKA-------APCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred HHHHhhhHHHHHHHHHHHHHhc-------CCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 432 3455554444433 36799999999774 24578888877743 357888999
Q ss_pred eCCCCCCChhhhcccc-eeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHH------HHhhC
Q 020071 148 CNVSSKIIEPIQSRCA-IVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG-DMRQALNNLQ------ATYSG 219 (331)
Q Consensus 148 ~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~~~~~l~------~~~~~ 219 (331)
||++..+.++++||+. .++|.-|+++|...+++..+++..++++-. .++++..++| +-|.+..-+- .++.+
T Consensus 261 TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed 339 (368)
T COG1223 261 TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLKTALHRAIAED 339 (368)
T ss_pred cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc
Confidence 9999999999999985 589999999999999999999888777665 7888888866 4555444332 22345
Q ss_pred CCccchhhhhhh
Q 020071 220 FRFVNQENVFKV 231 (331)
Q Consensus 220 ~~~i~~~~v~~~ 231 (331)
...|+.+++..+
T Consensus 340 ~e~v~~edie~a 351 (368)
T COG1223 340 REKVEREDIEKA 351 (368)
T ss_pred hhhhhHHHHHHH
Confidence 555666655543
No 90
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.87 E-value=9e-20 Score=172.47 Aligned_cols=259 Identities=14% Similarity=0.132 Sum_probs=173.9
Q ss_pred hhhcCCCCCCccccCHHHHHHHHHHHHc----CCCCe-EEEeCCCCccHHHHHHHHHHHhcCC----C-CCCceEEeecC
Q 020071 16 VEKYRPTKVCDIVGNLDAVARLGIIARD----GNMPN-LILAGPPGTGKTTSILALAHELLGP----N-YREAVMELNAS 85 (331)
Q Consensus 16 ~~~~~p~~~~~~ig~~~~~~~l~~~l~~----~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~----~-~~~~~~~~~~~ 85 (331)
...|.| +.+.|++..+..|...+.. ....+ ++++|+||+|||++++.+.+.+... . ....++++||.
T Consensus 749 ~~DYVP---D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 749 QLDVVP---KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcccCC---CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 344555 5688999999877766653 33334 4799999999999999999887421 1 23567899986
Q ss_pred CCCChHhHHHHH-------------------HHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc---CCcE
Q 020071 86 DDRGIDVVRNKI-------------------KMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS---NSTR 143 (331)
Q Consensus 86 ~~~~~~~i~~~i-------------------~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~---~~~~ 143 (331)
.......+...+ ..+..... .......||||||+|.|....++.|+.+++.+. ..+.
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~-k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLi 904 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNK-KDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLV 904 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhh-cccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEE
Confidence 543333222211 11111100 001224599999999998777888888877543 3566
Q ss_pred EEEeeCC---CCCCChhhhcccce--eeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH---hcCCCHHHHHHHHHH
Q 020071 144 FALACNV---SSKIIEPIQSRCAI--VRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIF---TADGDMRQALNNLQA 215 (331)
Q Consensus 144 ~I~~~~~---~~~l~~~l~sr~~~--i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~---~~~g~~r~~~~~l~~ 215 (331)
+|+++|. +..+.+.++||+.. +.|+|++.+++.++|..++......+++++++++++ ..+||.|.|+++|+.
T Consensus 905 LIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRr 984 (1164)
T PTZ00112 905 LIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRK 984 (1164)
T ss_pred EEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHH
Confidence 7777876 45677899999754 899999999999999999886544689999999998 668999999999987
Q ss_pred Hh--hCCCccchhhhhhhcCCCCHHHHHHHHHHHHcCCHHH--HHHHHHHHHHc----CCCHHHHHHHHHHHHH
Q 020071 216 TY--SGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD--ACSGLKQLYDL----GYSPTDIITTLFRIIK 281 (331)
Q Consensus 216 ~~--~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~--~~~~l~~l~~~----g~~~~~i~~~l~~~~~ 281 (331)
+. .....|+.++|.++........+.+.+ ......+ ++..+..+... .....+|+..+..+|+
T Consensus 985 AgEikegskVT~eHVrkAleeiE~srI~e~I---ktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce 1055 (1164)
T PTZ00112 985 AFENKRGQKIVPRDITEATNQLFDSPLTNAI---NYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVE 1055 (1164)
T ss_pred HHhhcCCCccCHHHHHHHHHHHHhhhHHHHH---HcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHH
Confidence 75 234578888888876554333333333 3333333 22212222222 2567778888888887
No 91
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.87 E-value=1e-19 Score=165.27 Aligned_cols=278 Identities=15% Similarity=0.132 Sum_probs=176.7
Q ss_pred chhhhcCCCCCCccccCHHHHHHHHHHHHc----CCCCeEEEeCCCCccHHHHHHHHHHHhcCCC----CCCceEEeecC
Q 020071 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARD----GNMPNLILAGPPGTGKTTSILALAHELLGPN----YREAVMELNAS 85 (331)
Q Consensus 14 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~----~~~~~~~~~~~ 85 (331)
.+...|.|. +++|++..++.|...+.. +..++++++||+|+|||++++.+++.+.... ....++.+++.
T Consensus 7 ~l~~~~~p~---~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 7 LLEPDYVPD---RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83 (365)
T ss_pred hCCCCCCCC---CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 456778885 679999999988888764 3444599999999999999999998874321 12567788876
Q ss_pred CCCChH-hHHHHHHHHHh--c--cc-------------C-C-CCCCceEEEEeCCCCCCHHH---HHHHHHH--HHHhc-
Q 020071 86 DDRGID-VVRNKIKMFAQ--K--KV-------------T-L-PPGKHKVVVLDEADSMTAGA---QQALRRT--MEIYS- 139 (331)
Q Consensus 86 ~~~~~~-~i~~~i~~~~~--~--~~-------------~-~-~~~~~~vviide~d~l~~~~---~~~Ll~~--le~~~- 139 (331)
...+.. .+..+...... . +. . + ..++..+|+|||+|.+.... ...|.++ ..+.+
T Consensus 84 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~ 163 (365)
T TIGR02928 84 ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDN 163 (365)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCC
Confidence 543322 22222222210 0 00 0 0 02345789999999995322 3334443 12222
Q ss_pred CCcEEEEeeCCCC---CCChhhhccc--ceeeecCCCHHHHHHHHHHHHHh--cCCCCCHHHHHHHHH---hcCCCHHHH
Q 020071 140 NSTRFALACNVSS---KIIEPIQSRC--AIVRFSRLSDEEILSRLMVVVQE--EKVPYVPEGLEAIIF---TADGDMRQA 209 (331)
Q Consensus 140 ~~~~~I~~~~~~~---~l~~~l~sr~--~~i~~~~~~~~~~~~~l~~~~~~--~~~~i~~~~~~~l~~---~~~g~~r~~ 209 (331)
.++.+|+++|.+. .+.+.+.+|+ ..+.|+|++.+++.++++.++.. .+..+++++++.++. .++||+|.+
T Consensus 164 ~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~a 243 (365)
T TIGR02928 164 AKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKA 243 (365)
T ss_pred CeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHH
Confidence 5678889998764 5778888887 46899999999999999998863 233478887776554 557999999
Q ss_pred HHHHHHHh-----hCCCccchhhhhhhcCCCCHHHHHHHHHHHHcCCHHH--HHHHHHHHHHcC---CCHHHHHHHHHHH
Q 020071 210 LNNLQATY-----SGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDD--ACSGLKQLYDLG---YSPTDIITTLFRI 279 (331)
Q Consensus 210 ~~~l~~~~-----~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~--~~~~l~~l~~~g---~~~~~i~~~l~~~ 279 (331)
++.++.+. .+...|+.+++.++........ ..+.+..-+..+ .+..+..+...+ ....+++..+..+
T Consensus 244 l~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~~~---~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 244 IDLLRVAGEIAEREGAERVTEDHVEKAQEKIEKDR---LLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 99997653 2445799999987665543222 233343334433 344454444423 3556666666667
Q ss_pred HHhcccChHhHHHHHHHH
Q 020071 280 IKNYEMAEHLKLEFMKEA 297 (331)
Q Consensus 280 ~~~~~~~~~~~~~~~~~l 297 (331)
++..++.+....++...+
T Consensus 321 ~~~~~~~~~~~~~~~~~l 338 (365)
T TIGR02928 321 CEDIGVDPLTQRRISDLL 338 (365)
T ss_pred HHhcCCCCCcHHHHHHHH
Confidence 776664443333333333
No 92
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.87 E-value=5.8e-20 Score=150.19 Aligned_cols=177 Identities=14% Similarity=0.104 Sum_probs=147.3
Q ss_pred HHHHHHHHHcCCCCe-EEEeCCCC-ccHHHHHHHHHHHhcCCC----CCCceEEeecC-------CCCChHhHHHHHHHH
Q 020071 34 VARLGIIARDGNMPN-LILAGPPG-TGKTTSILALAHELLGPN----YREAVMELNAS-------DDRGIDVVRNKIKMF 100 (331)
Q Consensus 34 ~~~l~~~l~~~~~~~-~ll~G~~G-~GKt~la~~l~~~l~~~~----~~~~~~~~~~~-------~~~~~~~i~~~i~~~ 100 (331)
+..+.+.++.+++.| +||.|..+ +||..++..+++.+.|.+ ...++..+.+. ...+++++|+..+..
T Consensus 2 ~~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l 81 (263)
T PRK06581 2 IERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFL 81 (263)
T ss_pred hHHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHH
Confidence 467889999999999 79999997 999999999999998853 23456666533 346889999999888
Q ss_pred HhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccceeeecCCCHHHHHHHHH
Q 020071 101 AQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLM 180 (331)
Q Consensus 101 ~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~ 180 (331)
...+. .+++||+||+++|.|+.+++|+|++++||||+++.||++|+++..+++|++|||+.+.|..+......++..
T Consensus 82 ~~~p~---~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~~~~e~~~ 158 (263)
T PRK06581 82 SKTSA---ISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVRSSILHAYNELYS 158 (263)
T ss_pred hhCcc---cCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHHHHHHHHH
Confidence 88876 789999999999999999999999999999999999999999999999999999999999999988888776
Q ss_pred HHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 020071 181 VVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT 216 (331)
Q Consensus 181 ~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~ 216 (331)
..+.. ..+...++.|.+...-|........+.+
T Consensus 159 ~~~~p---~~~~~~l~~i~~~~~~d~~~w~~~~~~~ 191 (263)
T PRK06581 159 QFIQP---IADNKTLDFINRFTTKDRELWLDFIDNL 191 (263)
T ss_pred Hhccc---ccccHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 64322 2345557888888776766666655544
No 93
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.86 E-value=3.5e-19 Score=163.35 Aligned_cols=274 Identities=18% Similarity=0.190 Sum_probs=180.7
Q ss_pred CccccCHHHHHHHHHHHHc----CCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHh-HHHHHHH
Q 020071 25 CDIVGNLDAVARLGIIARD----GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDV-VRNKIKM 99 (331)
Q Consensus 25 ~~~ig~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~i~~ 99 (331)
+.++|++..++.+...+.. +..++++++||+|+|||++++.+++.+........++.+++....+... +.+....
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 4588999999888777643 3445689999999999999999999886544456678888765432211 1111111
Q ss_pred HHhccc--C---------------CCCCCceEEEEeCCCCCC----HHHHHHHHHHHHHhcC-CcEEEEeeCCC---CCC
Q 020071 100 FAQKKV--T---------------LPPGKHKVVVLDEADSMT----AGAQQALRRTMEIYSN-STRFALACNVS---SKI 154 (331)
Q Consensus 100 ~~~~~~--~---------------~~~~~~~vviide~d~l~----~~~~~~Ll~~le~~~~-~~~~I~~~~~~---~~l 154 (331)
...... . ...+.+.+|+|||+|.+. .+....|++.++..+. ++.+|+++++. ..+
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l 189 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYIL 189 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhc
Confidence 111000 0 002345799999999986 3345555565554333 56788888875 356
Q ss_pred Chhhhccc--ceeeecCCCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHhc---CCCHHHHHHHHHHHh-----hCCCc
Q 020071 155 IEPIQSRC--AIVRFSRLSDEEILSRLMVVVQEE--KVPYVPEGLEAIIFTA---DGDMRQALNNLQATY-----SGFRF 222 (331)
Q Consensus 155 ~~~l~sr~--~~i~~~~~~~~~~~~~l~~~~~~~--~~~i~~~~~~~l~~~~---~g~~r~~~~~l~~~~-----~~~~~ 222 (331)
.+.+++|+ ..+.|+|++.+++.++++.++... ...+++++++.+++.+ .||+|.+++.+..+. .+...
T Consensus 190 ~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~ 269 (394)
T PRK00411 190 DPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRK 269 (394)
T ss_pred CHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCC
Confidence 67788876 568999999999999999988643 3358999999999887 899999999997542 34567
Q ss_pred cchhhhhhhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHhcccCh---HhHHHHHHH
Q 020071 223 VNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYD---LGYSPTDIITTLFRIIKNYEMAE---HLKLEFMKE 296 (331)
Q Consensus 223 i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~---~g~~~~~i~~~l~~~~~~~~~~~---~~~~~~~~~ 296 (331)
|+.+++.++........+...+..+.. .....+..+..+.. ...+..+++..+..+++..++++ ....+++..
T Consensus 270 I~~~~v~~a~~~~~~~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l~~ 348 (394)
T PRK00411 270 VTEEDVRKAYEKSEIVHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPRTHTRFYEYINK 348 (394)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 999999887665433333333333311 12223333333333 23578888888888888877644 455555555
Q ss_pred HHH
Q 020071 297 AGF 299 (331)
Q Consensus 297 l~~ 299 (331)
+.+
T Consensus 349 L~~ 351 (394)
T PRK00411 349 LDM 351 (394)
T ss_pred HHh
Confidence 553
No 94
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.86 E-value=5.4e-20 Score=155.84 Aligned_cols=206 Identities=17% Similarity=0.157 Sum_probs=152.8
Q ss_pred CCchhhhcC-CCCCCccc--cCHHHHHHHHHHHHcC-CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC
Q 020071 12 DIPWVEKYR-PTKVCDIV--GNLDAVARLGIIARDG-NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD 87 (331)
Q Consensus 12 ~~~~~~~~~-p~~~~~~i--g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (331)
++++.-.++ |.+|++++ ++..++..+..+.... ...+++|+||+|+|||++++++++..... +..++.+++...
T Consensus 4 ql~~~~~~~~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~--~~~~~~i~~~~~ 81 (227)
T PRK08903 4 QLTLDLGPPPPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG--GRNARYLDAASP 81 (227)
T ss_pred ccccCCCCCChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEehHHh
Confidence 344444333 56899988 3567777888877643 33349999999999999999999987544 334555555432
Q ss_pred CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCC--cEEEEeeCCC---CCCChhhhccc
Q 020071 88 RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNS--TRFALACNVS---SKIIEPIQSRC 162 (331)
Q Consensus 88 ~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~--~~~I~~~~~~---~~l~~~l~sr~ 162 (331)
. +.+ .+ .....+++|||+|.++...+..|..+++....+ ..+|++++.. ..+.+.+.||+
T Consensus 82 ~------~~~------~~---~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~ 146 (227)
T PRK08903 82 L------LAF------DF---DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRL 146 (227)
T ss_pred H------HHH------hh---cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHH
Confidence 1 111 11 234679999999999988899999999764432 2355555432 23567788885
Q ss_pred ---ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh----hCCCccchhhhhhhcCC
Q 020071 163 ---AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY----SGFRFVNQENVFKVCDQ 234 (331)
Q Consensus 163 ---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~----~~~~~i~~~~v~~~~~~ 234 (331)
..+.++|++.++...++.+.+.+.++.++++++++|++...||++.+.+.++.+. ...+.||...+.++++.
T Consensus 147 ~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~~~~~~~~~~i~~~~~~~~l~~ 225 (227)
T PRK08903 147 GWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPLLREMLAQ 225 (227)
T ss_pred hcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhc
Confidence 7899999999999999999888899999999999999999999999999988763 45577898888877654
No 95
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=2.3e-20 Score=161.09 Aligned_cols=189 Identities=22% Similarity=0.225 Sum_probs=136.7
Q ss_pred CCCccccCHHHHHHHHHHHH----------c-----CCCCeEEEeCCCCccHHHHHHHHHHHhcCCC--CCCceEEeecC
Q 020071 23 KVCDIVGNLDAVARLGIIAR----------D-----GNMPNLILAGPPGTGKTTSILALAHELLGPN--YREAVMELNAS 85 (331)
Q Consensus 23 ~~~~~ig~~~~~~~l~~~l~----------~-----~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~--~~~~~~~~~~~ 85 (331)
.+++++|.+.+++.+..... . +..+|++|+||||+|||++|+.+++.+...+ ....++++++.
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 35689999999987764422 1 2345689999999999999999999874322 22356666654
Q ss_pred CCCCh--HhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC--------HHHHHHHHHHHHHhcCCcEEEEeeCCC----
Q 020071 86 DDRGI--DVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT--------AGAQQALRRTMEIYSNSTRFALACNVS---- 151 (331)
Q Consensus 86 ~~~~~--~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~--------~~~~~~Ll~~le~~~~~~~~I~~~~~~---- 151 (331)
+..+. ......+...... ....|+||||+|.+. .+.++.|++.+++...++++|+++...
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~------a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~ 157 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKK------ALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDY 157 (261)
T ss_pred HhhhhhccchHHHHHHHHHh------ccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHH
Confidence 43221 0111111222211 224699999999875 456788999999887777777775432
Q ss_pred -CCCChhhhccc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh----------cCCCHHHHHHHHHHHh
Q 020071 152 -SKIIEPIQSRC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFT----------ADGDMRQALNNLQATY 217 (331)
Q Consensus 152 -~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~----------~~g~~r~~~~~l~~~~ 217 (331)
..+.|.+++|+ ..+.|++++.+++.+++++.+...+..++++++..+++. +.||.|.+.|.++.+.
T Consensus 158 ~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~ 235 (261)
T TIGR02881 158 FLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAI 235 (261)
T ss_pred HHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHH
Confidence 24678999998 568999999999999999999998889999998888543 3589999999998754
No 96
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.85 E-value=1.3e-19 Score=172.66 Aligned_cols=222 Identities=23% Similarity=0.243 Sum_probs=162.6
Q ss_pred chhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCC-----CCCceEEeecCCCC
Q 020071 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN-----YREAVMELNASDDR 88 (331)
Q Consensus 14 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~~ 88 (331)
|..+.+||.+|++++|++..+..+.+.+.....++++|+||+|+|||++|+.+++...... ...+++.+++....
T Consensus 143 ~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~ 222 (615)
T TIGR02903 143 SAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR 222 (615)
T ss_pred HHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc
Confidence 5677899999999999999999998888877777799999999999999999987663211 23567888875431
Q ss_pred C-hHhHHH------------HH-HHHHhccc------CCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc---------
Q 020071 89 G-IDVVRN------------KI-KMFAQKKV------TLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS--------- 139 (331)
Q Consensus 89 ~-~~~i~~------------~i-~~~~~~~~------~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~--------- 139 (331)
. ...+.. .. ........ .+.....+++||||++.|+...++.|++++++..
T Consensus 223 ~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~ 302 (615)
T TIGR02903 223 WDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYD 302 (615)
T ss_pred CCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceec
Confidence 0 111100 00 00000000 0012245799999999999999999999998521
Q ss_pred -------------------CCcEEEEee-CCCCCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 020071 140 -------------------NSTRFALAC-NVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAII 199 (331)
Q Consensus 140 -------------------~~~~~I~~~-~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~ 199 (331)
..+++|.++ +++..+.+++++||..+.|.|++.+++..++++.+.+.++.+++++++.|+
T Consensus 303 ~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~ 382 (615)
T TIGR02903 303 PDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIA 382 (615)
T ss_pred cCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 123344333 446788999999999999999999999999999999888889999999998
Q ss_pred HhcCCCHHHHHHHHHHHhh-------------CCCccchhhhhhhcCCCC
Q 020071 200 FTADGDMRQALNNLQATYS-------------GFRFVNQENVFKVCDQPH 236 (331)
Q Consensus 200 ~~~~g~~r~~~~~l~~~~~-------------~~~~i~~~~v~~~~~~~~ 236 (331)
+++. +.|++++.|+.+.. ....|+.+++.++++...
T Consensus 383 ~ys~-~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 383 RYTI-EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HCCC-cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCc
Confidence 8865 77999998865421 112578888888776643
No 97
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=99.85 E-value=3.1e-18 Score=152.71 Aligned_cols=282 Identities=15% Similarity=0.178 Sum_probs=220.3
Q ss_pred HHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceE
Q 020071 36 RLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKV 114 (331)
Q Consensus 36 ~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~v 114 (331)
.+...+.++..+. +++||+.-.-....+..+.+...+++....+..+...+ ..+...+......++ ++++++
T Consensus 5 ~~~~~l~~~~~~~v~ll~G~d~~l~~e~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~l---F~~~~~ 77 (334)
T COG1466 5 ELAKHLKKKNLMPVYLLYGEDEGLLEEAADAILKRALADGFDENYSFFDDSE----LDWADLLSELESPSL---FGEKRL 77 (334)
T ss_pred HHHHHHhcCCCccEEEEecCChhHHHHHHHHHHHHHhccchhhHHhhccccc----CCHHHHHHHhhcccc---ccCCee
Confidence 3445555554444 69999998778888888888775443333333333222 256677777777776 888999
Q ss_pred EEEeCCCCCC-HHHHHHHHHHHHHhc-CCcEEEEeeCCCC---CCChhhhcc--cceeeecCCCHHHHHHHHHHHHHhcC
Q 020071 115 VVLDEADSMT-AGAQQALRRTMEIYS-NSTRFALACNVSS---KIIEPIQSR--CAIVRFSRLSDEEILSRLMVVVQEEK 187 (331)
Q Consensus 115 viide~d~l~-~~~~~~Ll~~le~~~-~~~~~I~~~~~~~---~l~~~l~sr--~~~i~~~~~~~~~~~~~l~~~~~~~~ 187 (331)
++|+..+... .+....+......+| ..+.+++.++... +..+.+..- +.++.+.|++..++.+|+..++++.|
T Consensus 78 v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 157 (334)
T COG1466 78 VVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPLDEAELPQWIKKRAKELG 157 (334)
T ss_pred EEEECCCCCcCchhHHHHHHHHcCCCCCCEEEEEecCCcchHHHHHHHHHHhccCceEecCCCCHHHHHHHHHHHHHHcC
Confidence 9999998876 555666777777777 5665666554432 333344333 56899999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCCCHHHHHHHHHHHh--hCCCccchhhhhhhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 020071 188 VPYVPEGLEAIIFTADGDMRQALNNLQATY--SGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDL 265 (331)
Q Consensus 188 ~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~--~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~ 265 (331)
+.++++++++++...+||++.+.+++++++ ...+.||.++|..++......++|++++++..++..+|+..++++...
T Consensus 158 l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~a~~~l~~L~~~ 237 (334)
T COG1466 158 LKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVKKALRLLRDLLLE 237 (334)
T ss_pred CCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999885 333489999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHh--------------------cc---------------cChHhHHHHHHHHHHHHHHHhcCC-C
Q 020071 266 GYSPTDIITTLFRIIKN--------------------YE---------------MAEHLKLEFMKEAGFAHMRICDGV-G 309 (331)
Q Consensus 266 g~~~~~i~~~l~~~~~~--------------------~~---------------~~~~~~~~~~~~l~~~~~~l~~~~-~ 309 (331)
|++|..|++.+.+.... ++ ++...+.+++..+.+.++.++++. +
T Consensus 238 ge~p~~il~~l~~~f~~~~~l~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~r~s~~~l~~~l~~l~~~d~~~K~~~~d 317 (334)
T COG1466 238 GEEPLKLLAALTRQFRLLLQLKALAEKGKSLQQAAKSLGIPYRRKKLFKKAARRLSLKQLLKALRLLAQLDYQIKTGYGD 317 (334)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHhcCcHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999998774442 11 333334588899999999999988 7
Q ss_pred chHHHHHHHHHHHHH
Q 020071 310 SYLQLCGLLAKLSIV 324 (331)
Q Consensus 310 ~~l~l~~l~~~l~~~ 324 (331)
+...++.++++++..
T Consensus 318 ~~~~l~~~l~~~~~~ 332 (334)
T COG1466 318 PVWALELFLLRLLEL 332 (334)
T ss_pred chHHHHHHHHHHhhc
Confidence 888999999888753
No 98
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.83 E-value=3.4e-19 Score=150.98 Aligned_cols=198 Identities=18% Similarity=0.192 Sum_probs=146.5
Q ss_pred CCCCCcccc--CHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHH
Q 020071 21 PTKVCDIVG--NLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIK 98 (331)
Q Consensus 21 p~~~~~~ig--~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~ 98 (331)
|.+|+++++ +...+..+++++......+++|+||+|+|||++|+.+++..... +.+++.+++..... ...+.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~--~~~~~~~ 86 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQ--ADPEVLE 86 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHH--hHHHHHh
Confidence 457888873 67788999998776665669999999999999999999987533 23456666543311 1111111
Q ss_pred HHHhcccCCCCCCceEEEEeCCCCCCHHH--HHHHHHHHHHhc-CCcEEEEeeCCC-CC--C-Chhhhccc---ceeeec
Q 020071 99 MFAQKKVTLPPGKHKVVVLDEADSMTAGA--QQALRRTMEIYS-NSTRFALACNVS-SK--I-IEPIQSRC---AIVRFS 168 (331)
Q Consensus 99 ~~~~~~~~~~~~~~~vviide~d~l~~~~--~~~Ll~~le~~~-~~~~~I~~~~~~-~~--l-~~~l~sr~---~~i~~~ 168 (331)
. ..+..+++|||+|.++... ++.|..+++... .+..+|++++.. .. . .+.+.+|+ ..+.++
T Consensus 87 ~---------~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~ 157 (226)
T TIGR03420 87 G---------LEQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLP 157 (226)
T ss_pred h---------cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecC
Confidence 1 1234699999999998644 788888877532 335677777643 22 2 27788886 478999
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh----hCCCccchhhhhhh
Q 020071 169 RLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY----SGFRFVNQENVFKV 231 (331)
Q Consensus 169 ~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~----~~~~~i~~~~v~~~ 231 (331)
|++.++...+++..+.+.++.+++++++.|++..+||+|.+.+.++.+. .+.+.|+.+.+.++
T Consensus 158 ~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~~~~~~~~~~i~~~~~~~~ 224 (226)
T TIGR03420 158 PLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEV 224 (226)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 9999999999999888889999999999999999999999999987652 34556887777664
No 99
>PRK05642 DNA replication initiation factor; Validated
Probab=99.83 E-value=1e-18 Score=147.93 Aligned_cols=209 Identities=17% Similarity=0.171 Sum_probs=148.3
Q ss_pred CCCchhhhcCCC-CCCccc-cC-HHHHHHHHHHHHc---CCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeec
Q 020071 11 YDIPWVEKYRPT-KVCDIV-GN-LDAVARLGIIARD---GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNA 84 (331)
Q Consensus 11 ~~~~~~~~~~p~-~~~~~i-g~-~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 84 (331)
+++|+.-.+.|. +|++++ |. ..++..+.++... +..+.++||||+|+|||++++++++.+... +..++.++.
T Consensus 4 ~Ql~l~~~~~~~~tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~ 81 (234)
T PRK05642 4 IQLPLGVRLRDDATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPL 81 (234)
T ss_pred cccccCCCCCCcccccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeH
Confidence 577778887876 899987 33 3333344444332 122348999999999999999999887543 234455554
Q ss_pred CCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHHHhcC-CcEEEEeeCCC----CCCChh
Q 020071 85 SDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT--AGAQQALRRTMEIYSN-STRFALACNVS----SKIIEP 157 (331)
Q Consensus 85 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~--~~~~~~Ll~~le~~~~-~~~~I~~~~~~----~~l~~~ 157 (331)
.+... ...+.++.+ .+..+++|||++.+. +..++.|..++..... +.++|++++.. ....+.
T Consensus 82 ~~~~~--~~~~~~~~~---------~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~ 150 (234)
T PRK05642 82 AELLD--RGPELLDNL---------EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPD 150 (234)
T ss_pred HHHHh--hhHHHHHhh---------hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCcc
Confidence 33211 111111111 123589999999875 3446778888875443 56677777643 234699
Q ss_pred hhccc---ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh----hCCCccchhhhhh
Q 020071 158 IQSRC---AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY----SGFRFVNQENVFK 230 (331)
Q Consensus 158 l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~----~~~~~i~~~~v~~ 230 (331)
++||+ .++.+.+++.++...+++.++...++.++++++++|++..++|+|.+.+.++.+. ...+.||...+++
T Consensus 151 L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~~~ 230 (234)
T PRK05642 151 LKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRKLTIPFLKE 230 (234)
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCcCCHHHHHH
Confidence 99998 8899999999999999998888889999999999999999999999999998763 2346788877776
Q ss_pred hc
Q 020071 231 VC 232 (331)
Q Consensus 231 ~~ 232 (331)
++
T Consensus 231 ~L 232 (234)
T PRK05642 231 TL 232 (234)
T ss_pred Hh
Confidence 54
No 100
>PRK06620 hypothetical protein; Validated
Probab=99.83 E-value=6.5e-19 Score=146.65 Aligned_cols=194 Identities=11% Similarity=0.046 Sum_probs=133.5
Q ss_pred CCCchhhhcCCC-CCCccc-c--CHHHHHHHHHHHHcC-C-C--CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEe
Q 020071 11 YDIPWVEKYRPT-KVCDIV-G--NLDAVARLGIIARDG-N-M--PNLILAGPPGTGKTTSILALAHELLGPNYREAVMEL 82 (331)
Q Consensus 11 ~~~~~~~~~~p~-~~~~~i-g--~~~~~~~l~~~l~~~-~-~--~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 82 (331)
+++++.-.+.|. +|++++ | +..+...+..+.... . . +.++||||+|+|||++++++++.. +..++
T Consensus 1 ~Ql~l~~~~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~-----~~~~~-- 73 (214)
T PRK06620 1 QQYIFRFTTSSKYHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS-----NAYII-- 73 (214)
T ss_pred CCcccCCCCCCCCCchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc-----CCEEc--
Confidence 345555555555 677765 3 456677777777632 2 2 348999999999999999988765 22121
Q ss_pred ecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC-C--CCChhhh
Q 020071 83 NASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVS-S--KIIEPIQ 159 (331)
Q Consensus 83 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~-~--~l~~~l~ 159 (331)
..... .. .. .....+++|||+|.+.....-.+.+.+.+. +..++++++.. . .+ +.++
T Consensus 74 ~~~~~-----~~----~~--------~~~~d~lliDdi~~~~~~~lf~l~N~~~e~--g~~ilits~~~p~~l~l-~~L~ 133 (214)
T PRK06620 74 KDIFF-----NE----EI--------LEKYNAFIIEDIENWQEPALLHIFNIINEK--QKYLLLTSSDKSRNFTL-PDLS 133 (214)
T ss_pred chhhh-----ch----hH--------HhcCCEEEEeccccchHHHHHHHHHHHHhc--CCEEEEEcCCCccccch-HHHH
Confidence 11000 00 00 122469999999987543333333333332 33556665432 2 34 8999
Q ss_pred cccc---eeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh----hCCCccchhhhhhh
Q 020071 160 SRCA---IVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY----SGFRFVNQENVFKV 231 (331)
Q Consensus 160 sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~----~~~~~i~~~~v~~~ 231 (331)
||+. ++.+.||+.+++..++++.+...++.++++++++|+++++||+|.+.+.++.+. ...+.||.+.+.++
T Consensus 134 SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~~~~~ 212 (214)
T PRK06620 134 SRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLVKEV 212 (214)
T ss_pred HHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9987 899999999999999999999899999999999999999999999999998763 23455777766654
No 101
>CHL00181 cbbX CbbX; Provisional
Probab=99.81 E-value=1.4e-18 Score=150.84 Aligned_cols=187 Identities=25% Similarity=0.273 Sum_probs=133.1
Q ss_pred CccccCHHHHHHHHHHHHc----------C-----CCCeEEEeCCCCccHHHHHHHHHHHhcCCCC--CCceEEeecCCC
Q 020071 25 CDIVGNLDAVARLGIIARD----------G-----NMPNLILAGPPGTGKTTSILALAHELLGPNY--REAVMELNASDD 87 (331)
Q Consensus 25 ~~~ig~~~~~~~l~~~l~~----------~-----~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~--~~~~~~~~~~~~ 87 (331)
.+++|.+.+++.+...+.. | ...|++|+||||||||++|+.+++.+...+. ..++++++..+.
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 3799999998876655321 1 2235899999999999999999998753322 234666664432
Q ss_pred CCh--HhHHHHHHHHHhcccCCCCCCceEEEEeCCCCC---------CHHHHHHHHHHHHHhcCCcEEEEeeCCC-----
Q 020071 88 RGI--DVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM---------TAGAQQALRRTMEIYSNSTRFALACNVS----- 151 (331)
Q Consensus 88 ~~~--~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l---------~~~~~~~Ll~~le~~~~~~~~I~~~~~~----- 151 (331)
.+. ............ ...+.|+||||++.+ +.+.++.|+..|++...++++|++++..
T Consensus 103 ~~~~~g~~~~~~~~~l~------~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~ 176 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLK------KAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKF 176 (287)
T ss_pred HHHHhccchHHHHHHHH------HccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHH
Confidence 110 000001111111 123579999999986 4567899999999887788888876532
Q ss_pred CCCChhhhcccc-eeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh--------cCCCHHHHHHHHHHHh
Q 020071 152 SKIIEPIQSRCA-IVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFT--------ADGDMRQALNNLQATY 217 (331)
Q Consensus 152 ~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~--------~~g~~r~~~~~l~~~~ 217 (331)
....|.+++|+. .+.|+|++.+++.+++...+++.+..+++++...+..+ .-||.|.+.+.++.+.
T Consensus 177 ~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 177 YESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 134589999986 68999999999999999999999999998877666654 2389999999998764
No 102
>PRK09087 hypothetical protein; Validated
Probab=99.80 E-value=2.1e-18 Score=144.85 Aligned_cols=200 Identities=14% Similarity=0.165 Sum_probs=143.4
Q ss_pred CCCCchhhhcCCC-CCCcccc---CHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecC
Q 020071 10 AYDIPWVEKYRPT-KVCDIVG---NLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNAS 85 (331)
Q Consensus 10 ~~~~~~~~~~~p~-~~~~~ig---~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 85 (331)
+.++++.-.++|. +|++++. +..++..+.++.. ...|.++||||+|+|||++++++++.. +..++ +..
T Consensus 5 ~~Ql~l~~~~~~~~~~~~Fi~~~~N~~a~~~l~~~~~-~~~~~l~l~G~~GsGKThLl~~~~~~~-----~~~~i--~~~ 76 (226)
T PRK09087 5 PEQLPLNFSHDPAYGRDDLLVTESNRAAVSLVDHWPN-WPSPVVVLAGPVGSGKTHLASIWREKS-----DALLI--HPN 76 (226)
T ss_pred CcceeeCCCCCCCCChhceeecCchHHHHHHHHhccc-CCCCeEEEECCCCCCHHHHHHHHHHhc-----CCEEe--cHH
Confidence 5677777777766 8999884 4556666655442 233448999999999999999998865 32233 221
Q ss_pred CCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeeCCC----CCCChhhhc
Q 020071 86 DDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSN-STRFALACNVS----SKIIEPIQS 160 (331)
Q Consensus 86 ~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~-~~~~I~~~~~~----~~l~~~l~s 160 (331)
.. +.+ .+. . ....+++|||++.+.. .+.+|..++..... +..+|++++.. ....+.++|
T Consensus 77 ~~-~~~----~~~----~------~~~~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S 140 (226)
T PRK09087 77 EI-GSD----AAN----A------AAEGPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS 140 (226)
T ss_pred Hc-chH----HHH----h------hhcCeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH
Confidence 11 111 111 0 0124899999998753 45677777764433 56677777643 234688999
Q ss_pred cc---ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh----hCCCccchhhhhhhcC
Q 020071 161 RC---AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY----SGFRFVNQENVFKVCD 233 (331)
Q Consensus 161 r~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~----~~~~~i~~~~v~~~~~ 233 (331)
|+ .++++.||+.++...++++.++..++.++++++++|++.++|+++.+...++.+. ...+.||...+++++.
T Consensus 141 Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~ 220 (226)
T PRK09087 141 RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLN 220 (226)
T ss_pred HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 97 8999999999999999999999999999999999999999999999998776552 3456688777776543
No 103
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.80 E-value=2.5e-18 Score=168.06 Aligned_cols=216 Identities=17% Similarity=0.182 Sum_probs=160.4
Q ss_pred CCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCC-----CCceEEeecCC
Q 020071 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY-----REAVMELNASD 86 (331)
Q Consensus 12 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-----~~~~~~~~~~~ 86 (331)
..|++++.||..+++++|+++.+..+...+.....++++|+||||+|||++++.+++.+..... +..++.++...
T Consensus 169 ~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~ 248 (731)
T TIGR02639 169 TVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGS 248 (731)
T ss_pred hhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHH
Confidence 4489999999999999999999999999998888888999999999999999999998743321 33455655332
Q ss_pred CC----ChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC---------HHHHHHHHHHHHHhcCCcEEEEeeCCC--
Q 020071 87 DR----GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT---------AGAQQALRRTMEIYSNSTRFALACNVS-- 151 (331)
Q Consensus 87 ~~----~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~---------~~~~~~Ll~~le~~~~~~~~I~~~~~~-- 151 (331)
.. ...++.+.++....... ...+.++||||+|.+. .+.++.|...++. ..+.+|.+|+..
T Consensus 249 l~a~~~~~g~~e~~l~~i~~~~~---~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt~~e~ 323 (731)
T TIGR02639 249 LLAGTKYRGDFEERLKAVVSEIE---KEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTTYEEY 323 (731)
T ss_pred HhhhccccchHHHHHHHHHHHHh---ccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecCHHHH
Confidence 21 11234444444433221 1236799999999884 2457778888874 567788888752
Q ss_pred ---CCCChhhhcccceeeecCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhcCC------CHHHHHHHHHHHhh
Q 020071 152 ---SKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE----EKVPYVPEGLEAIIFTADG------DMRQALNNLQATYS 218 (331)
Q Consensus 152 ---~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~~~g------~~r~~~~~l~~~~~ 218 (331)
....+++.+||+.+.+++|+.++...+++..... .++.++++++..++.+++. -+++++.+++.++.
T Consensus 324 ~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a 403 (731)
T TIGR02639 324 KNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGA 403 (731)
T ss_pred HHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhh
Confidence 3568999999999999999999999999976654 4678999999999988743 38999999976542
Q ss_pred ---------CCCccchhhhhhhc
Q 020071 219 ---------GFRFVNQENVFKVC 232 (331)
Q Consensus 219 ---------~~~~i~~~~v~~~~ 232 (331)
....++.+++..++
T Consensus 404 ~~~~~~~~~~~~~v~~~~i~~~i 426 (731)
T TIGR02639 404 SFRLRPKAKKKANVSVKDIENVV 426 (731)
T ss_pred hhhcCcccccccccCHHHHHHHH
Confidence 12236666666543
No 104
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=6.6e-17 Score=144.40 Aligned_cols=276 Identities=18% Similarity=0.245 Sum_probs=182.6
Q ss_pred hhhcCCCCCCccccCHHHHHHHHHH----HHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChH
Q 020071 16 VEKYRPTKVCDIVGNLDAVARLGII----ARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGID 91 (331)
Q Consensus 16 ~~~~~p~~~~~~ig~~~~~~~l~~~----l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (331)
...|-|.. +.+++..++.+... +.++.+.++++||++|+|||..++.+.+++........++++||....+..
T Consensus 11 ~~~~iP~~---l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 11 LEDYIPEE---LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred CCCCCccc---ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 34455544 77888888766554 445555559999999999999999999999765555558899987765543
Q ss_pred hHHH-HHHHHHhcccC---------------CCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc---CCcEEEEeeCCC-
Q 020071 92 VVRN-KIKMFAQKKVT---------------LPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS---NSTRFALACNVS- 151 (331)
Q Consensus 92 ~i~~-~i~~~~~~~~~---------------~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~---~~~~~I~~~~~~- 151 (331)
++-. +.+.+...|.. ...+..-+|++||+|.|....++.|..++..+. ..+.+|+++|+.
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~ 167 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDK 167 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHH
Confidence 3222 22222111110 002457799999999998776566666665433 345677777775
Q ss_pred --CCCChhhhcccc--eeeecCCCHHHHHHHHHHHHHh--cCCCCCHHHHHHHHH---hcCCCHHHHHHHHHHHh-----
Q 020071 152 --SKIIEPIQSRCA--IVRFSRLSDEEILSRLMVVVQE--EKVPYVPEGLEAIIF---TADGDMRQALNNLQATY----- 217 (331)
Q Consensus 152 --~~l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~--~~~~i~~~~~~~l~~---~~~g~~r~~~~~l~~~~----- 217 (331)
..+.+.++|+.. .+.|+|++.+|+.++|..+++. ..-.+++++++.++. ..+||.|.++..|+.+.
T Consensus 168 ~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~ 247 (366)
T COG1474 168 FLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAER 247 (366)
T ss_pred HHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHh
Confidence 467788888853 3689999999999999999874 234578888877764 45789999999998663
Q ss_pred hCCCccchhhhhhhcCCCCHHHHHHHHHHHHcCCHHHHHH--HHHHHHHcCCCHHHHHHHHHHHHHhcccChHhHHHHHH
Q 020071 218 SGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACS--GLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMK 295 (331)
Q Consensus 218 ~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~--~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 295 (331)
.+...++.+++..+..........+.++.+ ...+-+. .+.... ...+..+++..+...++..+.+......+++
T Consensus 248 ~~~~~v~~~~v~~a~~~~~~~~~~~~~~~L---~~~~ki~L~~i~~~~-~~~~~~~~y~~y~~~~~~~~~~~~~~~~ii~ 323 (366)
T COG1474 248 EGSRKVSEDHVREAQEEIERDVLEEVLKTL---PLHQKIVLLAIVELT-VEISTGELYDVYESLCERLRTSQRRFSDIIS 323 (366)
T ss_pred hCCCCcCHHHHHHHHHHhhHHHHHHHHHcC---CHhHHHHHHHHHHhc-CCCChHHHHHHHHHHHhhhCchHHHHHHHHH
Confidence 467789999999874444444444443333 2222222 111211 5577888888888888876553333444554
Q ss_pred HHH
Q 020071 296 EAG 298 (331)
Q Consensus 296 ~l~ 298 (331)
.+.
T Consensus 324 ~L~ 326 (366)
T COG1474 324 ELE 326 (366)
T ss_pred HHH
Confidence 443
No 105
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=9.4e-18 Score=143.57 Aligned_cols=198 Identities=19% Similarity=0.278 Sum_probs=145.3
Q ss_pred CCC-CCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecC
Q 020071 20 RPT-KVCDIVGNLDAVARLGIIARD-----------G-NMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNAS 85 (331)
Q Consensus 20 ~p~-~~~~~ig~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 85 (331)
+|. +++|+=|-+..+++++..+.- | .+|. +|||||||||||.+|+++|++. +..|+.+.++
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T-----~AtFIrvvgS 219 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT-----DATFIRVVGS 219 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc-----CceEEEeccH
Confidence 444 788999999999999998753 3 2333 9999999999999999999998 6778888776
Q ss_pred CC------CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHH-----HhcCCcE
Q 020071 86 DD------RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT-----------AGAQQALRRTME-----IYSNSTR 143 (331)
Q Consensus 86 ~~------~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~-----------~~~~~~Ll~~le-----~~~~~~~ 143 (331)
.. .|...+++++.-+.+. .+.+|||||+|.+. .+.|-.++++|. ++..++.
T Consensus 220 ElVqKYiGEGaRlVRelF~lArek-------aPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvK 292 (406)
T COG1222 220 ELVQKYIGEGARLVRELFELAREK-------APSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVK 292 (406)
T ss_pred HHHHHHhccchHHHHHHHHHHhhc-------CCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeE
Confidence 53 2334566666555543 36799999999773 356777777776 3567999
Q ss_pred EEEeeCCCCCCChhhhcc--c-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHH
Q 020071 144 FALACNVSSKIIEPIQSR--C-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG----DMRQALNNLQAT 216 (331)
Q Consensus 144 ~I~~~~~~~~l~~~l~sr--~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g----~~r~~~~~l~~~ 216 (331)
+|++||.+.-|.|+|.+- + ..++|+.|+.+...++++-+.++-++. ++-.++.|++.+.| +++.+..+.-..
T Consensus 293 VI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la~~~~g~sGAdlkaictEAGm~ 371 (406)
T COG1222 293 VIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLARLTEGFSGADLKAICTEAGMF 371 (406)
T ss_pred EEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHHHhcCCCchHHHHHHHHHHhHH
Confidence 999999999999999874 3 458999999999999998887766542 33347788888765 333333333222
Q ss_pred h--hCCCccchhhhhh
Q 020071 217 Y--SGFRFVNQENVFK 230 (331)
Q Consensus 217 ~--~~~~~i~~~~v~~ 230 (331)
+ .....+|.+|..+
T Consensus 372 AiR~~R~~Vt~~DF~~ 387 (406)
T COG1222 372 AIRERRDEVTMEDFLK 387 (406)
T ss_pred HHHhccCeecHHHHHH
Confidence 2 4555677776654
No 106
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.77 E-value=1.7e-17 Score=144.37 Aligned_cols=186 Identities=24% Similarity=0.246 Sum_probs=134.5
Q ss_pred ccccCHHHHHHHHHHHH----------cCC----C-CeEEEeCCCCccHHHHHHHHHHHhcCCCC--CCceEEeecCCCC
Q 020071 26 DIVGNLDAVARLGIIAR----------DGN----M-PNLILAGPPGTGKTTSILALAHELLGPNY--REAVMELNASDDR 88 (331)
Q Consensus 26 ~~ig~~~~~~~l~~~l~----------~~~----~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~--~~~~~~~~~~~~~ 88 (331)
+++|.+.+++.+..... .|. . .|++|+||||||||++|+.+++.+...+. ..+++.+++.+..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 68999998887755422 121 1 25999999999999999999988754332 2357777654321
Q ss_pred Ch--HhHHHHHHHHHhcccCCCCCCceEEEEeCCCCC---------CHHHHHHHHHHHHHhcCCcEEEEeeCCC-----C
Q 020071 89 GI--DVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM---------TAGAQQALRRTMEIYSNSTRFALACNVS-----S 152 (331)
Q Consensus 89 ~~--~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l---------~~~~~~~Ll~~le~~~~~~~~I~~~~~~-----~ 152 (331)
+. ......+..... ...+.++||||++.+ +.+.++.|++.|+....++++|++++.. .
T Consensus 103 ~~~~g~~~~~~~~~~~------~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~ 176 (284)
T TIGR02880 103 GQYIGHTAPKTKEILK------RAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFF 176 (284)
T ss_pred HhhcccchHHHHHHHH------HccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHH
Confidence 10 000011111111 123479999999977 3566889999999887788888876542 2
Q ss_pred CCChhhhcccc-eeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh--------cCCCHHHHHHHHHHHh
Q 020071 153 KIIEPIQSRCA-IVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFT--------ADGDMRQALNNLQATY 217 (331)
Q Consensus 153 ~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~--------~~g~~r~~~~~l~~~~ 217 (331)
.+.|.+++|+. .+.|+|++.+++..++...+++.+..+++++.+.+..+ ..||.|.+.|.++.+.
T Consensus 177 ~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~ 250 (284)
T TIGR02880 177 ESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRAR 250 (284)
T ss_pred hhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 35799999984 68999999999999999999998889999998888775 2499999999998764
No 107
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.77 E-value=1e-16 Score=148.86 Aligned_cols=208 Identities=19% Similarity=0.192 Sum_probs=146.4
Q ss_pred cCCC-CCCccc-c--CHHHHHHHHHHHHcC--CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHh
Q 020071 19 YRPT-KVCDIV-G--NLDAVARLGIIARDG--NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDV 92 (331)
Q Consensus 19 ~~p~-~~~~~i-g--~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 92 (331)
+.|. +|++++ | +..+...+..+..+. ..+.++||||+|+|||++++++++.+.....+..++.+++.+.. ..
T Consensus 115 l~~~~tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~--~~ 192 (450)
T PRK00149 115 LNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT--ND 192 (450)
T ss_pred CCCCCcccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH--HH
Confidence 4444 788865 4 344556666666542 22348999999999999999999998655444556666654321 11
Q ss_pred HHHHHH-----HHHhcccCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHHHhc-CCcEEEEeeCCCC----CCChhhhc
Q 020071 93 VRNKIK-----MFAQKKVTLPPGKHKVVVLDEADSMTA--GAQQALRRTMEIYS-NSTRFALACNVSS----KIIEPIQS 160 (331)
Q Consensus 93 i~~~i~-----~~~~~~~~~~~~~~~vviide~d~l~~--~~~~~Ll~~le~~~-~~~~~I~~~~~~~----~l~~~l~s 160 (331)
+...+. .+... .....+++|||+|.+.. ..++.|+.+++... .+..+|++++.+. .+.+.++|
T Consensus 193 ~~~~~~~~~~~~~~~~-----~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S 267 (450)
T PRK00149 193 FVNALRNNTMEEFKEK-----YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS 267 (450)
T ss_pred HHHHHHcCcHHHHHHH-----HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 111111 11111 12356999999999854 35677777776432 2345667776542 36688999
Q ss_pred cc---ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh----hCCCccchhhhhhhcC
Q 020071 161 RC---AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY----SGFRFVNQENVFKVCD 233 (331)
Q Consensus 161 r~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~----~~~~~i~~~~v~~~~~ 233 (331)
|+ .++.+.||+.++...+++.++...++.++++++++|++.++||+|.+...+..+. .....||.+.+.+++.
T Consensus 268 Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~ 347 (450)
T PRK00149 268 RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALK 347 (450)
T ss_pred HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Confidence 97 5799999999999999999999999999999999999999999999888887653 3456688888877655
No 108
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.76 E-value=2.9e-17 Score=161.75 Aligned_cols=198 Identities=17% Similarity=0.175 Sum_probs=150.4
Q ss_pred CCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCC-----CCceEEeecCC
Q 020071 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY-----REAVMELNASD 86 (331)
Q Consensus 12 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-----~~~~~~~~~~~ 86 (331)
..+++++.||..+++++|+++.+.++...+..+..++++|+||||+|||++++.+++.+..... +..++.++...
T Consensus 174 ~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~ 253 (852)
T TIGR03345 174 TTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL 253 (852)
T ss_pred hhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh
Confidence 3478889999999999999999999999998988888999999999999999999998853321 23344444332
Q ss_pred C----CCh----HhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH--------HHHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 87 D----RGI----DVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA--------GAQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 87 ~----~~~----~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~--------~~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
. ... +.+++.++.... .+.+.|+||||+|.+.. +..+.|...++. ...++|.+|+.
T Consensus 254 l~ag~~~~ge~e~~lk~ii~e~~~------~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaTT~ 325 (852)
T TIGR03345 254 LQAGASVKGEFENRLKSVIDEVKA------SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAATTW 325 (852)
T ss_pred hhcccccchHHHHHHHHHHHHHHh------cCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEecCH
Confidence 1 122 234444444322 23467999999999953 234567788875 56778888875
Q ss_pred C-----CCCChhhhcccceeeecCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhcCC------CHHHHHHHHHH
Q 020071 151 S-----SKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE----EKVPYVPEGLEAIIFTADG------DMRQALNNLQA 215 (331)
Q Consensus 151 ~-----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~~~g------~~r~~~~~l~~ 215 (331)
. ....+++.+||+.+.+++|+.++...+|+..... .++.++++++..++.++.+ -|.+++.+++.
T Consensus 326 ~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdllde 405 (852)
T TIGR03345 326 AEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDT 405 (852)
T ss_pred HHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHH
Confidence 3 3578999999999999999999999997655543 4688999999999998853 58899999986
Q ss_pred Hh
Q 020071 216 TY 217 (331)
Q Consensus 216 ~~ 217 (331)
++
T Consensus 406 a~ 407 (852)
T TIGR03345 406 AC 407 (852)
T ss_pred HH
Confidence 53
No 109
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.76 E-value=5.8e-16 Score=142.70 Aligned_cols=207 Identities=13% Similarity=0.197 Sum_probs=146.3
Q ss_pred CCCCCCccc-cC--HHHHHHHHHHHHc-CC-CCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHH
Q 020071 20 RPTKVCDIV-GN--LDAVARLGIIARD-GN-MPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVR 94 (331)
Q Consensus 20 ~p~~~~~~i-g~--~~~~~~l~~~l~~-~~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 94 (331)
.+.+|+.++ |. ..+...+.....+ +. .+.++|||++|+|||++++++++.+.....+..++.+++.+.. ..+.
T Consensus 110 ~~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~--~~~~ 187 (450)
T PRK14087 110 NENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA--RKAV 187 (450)
T ss_pred cccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH--HHHH
Confidence 356898876 43 3345555555554 22 2348999999999999999999987543334556666654321 1111
Q ss_pred H-------HHHHHHhcccCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHHHhc-CCcEEEEeeCCC----CCCChhhhc
Q 020071 95 N-------KIKMFAQKKVTLPPGKHKVVVLDEADSMT--AGAQQALRRTMEIYS-NSTRFALACNVS----SKIIEPIQS 160 (331)
Q Consensus 95 ~-------~i~~~~~~~~~~~~~~~~vviide~d~l~--~~~~~~Ll~~le~~~-~~~~~I~~~~~~----~~l~~~l~s 160 (331)
. .+..+... .....+++|||++.+. ...++.|..++.... .+..+|++++.. ..+.+.++|
T Consensus 188 ~~l~~~~~~~~~~~~~-----~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S 262 (450)
T PRK14087 188 DILQKTHKEIEQFKNE-----ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT 262 (450)
T ss_pred HHHHHhhhHHHHHHHH-----hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH
Confidence 1 11111111 1235699999999986 567788888877533 344678887754 245688999
Q ss_pred cc---ceeeecCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCCHHHHHHHHHHHh----hC--CCccchhhhh
Q 020071 161 RC---AIVRFSRLSDEEILSRLMVVVQEEKV--PYVPEGLEAIIFTADGDMRQALNNLQATY----SG--FRFVNQENVF 229 (331)
Q Consensus 161 r~---~~i~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~~~~l~~~~~g~~r~~~~~l~~~~----~~--~~~i~~~~v~ 229 (331)
|+ .++.+.||+.++..++|++.++..|. .++++++++|++.++||+|.+.+.+..+. .. ...||.+.+.
T Consensus 263 R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~ 342 (450)
T PRK14087 263 RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVS 342 (450)
T ss_pred HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHH
Confidence 85 57899999999999999999988775 69999999999999999999999997662 12 3578988887
Q ss_pred hhcC
Q 020071 230 KVCD 233 (331)
Q Consensus 230 ~~~~ 233 (331)
+++.
T Consensus 343 ~~l~ 346 (450)
T PRK14087 343 DLFR 346 (450)
T ss_pred HHHh
Confidence 7664
No 110
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.75 E-value=9.7e-17 Score=149.00 Aligned_cols=204 Identities=22% Similarity=0.308 Sum_probs=133.2
Q ss_pred CCCCchhhhcCCCCCCccccCHHHHHHHHHHHHcC---CCC-e-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEee-
Q 020071 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDG---NMP-N-LILAGPPGTGKTTSILALAHELLGPNYREAVMELN- 83 (331)
Q Consensus 10 ~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~---~~~-~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~- 83 (331)
+...||.+||+|++.+|++.|.+-++.++.|++.. ..+ . ++|+||+|+|||++++.+++++. ..+.+..
T Consensus 4 ~~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg-----~~v~Ew~n 78 (519)
T PF03215_consen 4 DESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG-----FEVQEWIN 78 (519)
T ss_pred cccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC-----CeeEEecC
Confidence 45678999999999999999999999999998863 222 2 69999999999999999999983 3333321
Q ss_pred cCC----------CCC----hHhHHHHHHHHHhc-----cc---C----CCCCCceEEEEeCCCCCCHHHHHHHHH----
Q 020071 84 ASD----------DRG----IDVVRNKIKMFAQK-----KV---T----LPPGKHKVVVLDEADSMTAGAQQALRR---- 133 (331)
Q Consensus 84 ~~~----------~~~----~~~i~~~i~~~~~~-----~~---~----~~~~~~~vviide~d~l~~~~~~~Ll~---- 133 (331)
+.. ..+ .+........+... .. . ....+++||+|+|+-.........|..
T Consensus 79 p~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~ 158 (519)
T PF03215_consen 79 PVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQ 158 (519)
T ss_pred CCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHH
Confidence 111 000 00001111111111 00 0 012468999999987654333244444
Q ss_pred HHHHhcC-CcEEEEee-CC------CC--------CCChhhhcc--cceeeecCCCHHHHHHHHHHHHHhc-----CC-C
Q 020071 134 TMEIYSN-STRFALAC-NV------SS--------KIIEPIQSR--CAIVRFSRLSDEEILSRLMVVVQEE-----KV-P 189 (331)
Q Consensus 134 ~le~~~~-~~~~I~~~-~~------~~--------~l~~~l~sr--~~~i~~~~~~~~~~~~~l~~~~~~~-----~~-~ 189 (331)
++..... -++||++- +. .. -+.+.+... +..|.|.|+++.-+.+.|.+++..+ +. .
T Consensus 159 ~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~ 238 (519)
T PF03215_consen 159 YLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKNK 238 (519)
T ss_pred HHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCcc
Confidence 4443222 23344441 11 11 244566554 6779999999999999999999877 22 2
Q ss_pred CC--HHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 020071 190 YV--PEGLEAIIFTADGDMRQALNNLQATYS 218 (331)
Q Consensus 190 i~--~~~~~~l~~~~~g~~r~~~~~l~~~~~ 218 (331)
.+ .+.++.|++.++||+|.|++.||.++.
T Consensus 239 ~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 239 VPDKQSVLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred CCChHHHHHHHHHhcCchHHHHHHHHHHHhc
Confidence 22 345899999999999999999998864
No 111
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.74 E-value=6.2e-16 Score=142.00 Aligned_cols=203 Identities=20% Similarity=0.211 Sum_probs=140.9
Q ss_pred CCCccc-cCHH--HHHHHHHHHHcC-C-CCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHH
Q 020071 23 KVCDIV-GNLD--AVARLGIIARDG-N-MPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKI 97 (331)
Q Consensus 23 ~~~~~i-g~~~--~~~~l~~~l~~~-~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i 97 (331)
+|++++ |... +...+....... . ...++||||+|+|||++++++++.+.....+..++.+++.+.. ..+...+
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~--~~~~~~~ 185 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFT--NDFVNAL 185 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHH--HHHHHHH
Confidence 678754 5433 444555555542 2 2238999999999999999999998654444556666654321 1111111
Q ss_pred -----HHHHhcccCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHHHh-cCCcEEEEeeCCC----CCCChhhhccc---
Q 020071 98 -----KMFAQKKVTLPPGKHKVVVLDEADSMTA--GAQQALRRTMEIY-SNSTRFALACNVS----SKIIEPIQSRC--- 162 (331)
Q Consensus 98 -----~~~~~~~~~~~~~~~~vviide~d~l~~--~~~~~Ll~~le~~-~~~~~~I~~~~~~----~~l~~~l~sr~--- 162 (331)
..+... .....+++|||++.+.. ..++.|+.+++.. ..+..+|++++.. ..+.+.++||+
T Consensus 186 ~~~~~~~~~~~-----~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g 260 (405)
T TIGR00362 186 RNNKMEEFKEK-----YRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWG 260 (405)
T ss_pred HcCCHHHHHHH-----HHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCC
Confidence 111110 11246999999998854 3567788777643 2345677777653 34668899997
Q ss_pred ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh----hCCCccchhhhhhhc
Q 020071 163 AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY----SGFRFVNQENVFKVC 232 (331)
Q Consensus 163 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~----~~~~~i~~~~v~~~~ 232 (331)
..+.|.||+.++...+++++++..++.++++++++|++...+|+|.+...+..+. .....||.+.+.+++
T Consensus 261 ~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L 334 (405)
T TIGR00362 261 LVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEAL 334 (405)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999887776553 345668877776654
No 112
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.74 E-value=1.2e-16 Score=149.98 Aligned_cols=203 Identities=20% Similarity=0.209 Sum_probs=139.3
Q ss_pred hcCCCCCCccccCHHHHHHHHHHHH-----------cCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecC
Q 020071 18 KYRPTKVCDIVGNLDAVARLGIIAR-----------DGNMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNAS 85 (331)
Q Consensus 18 ~~~p~~~~~~ig~~~~~~~l~~~l~-----------~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 85 (331)
...+.+|+|++|.++++..+...+. +...|. +|||||||||||++|++++... +.+++.+++.
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-----~~~~~~i~~~ 122 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-----GVPFFSISGS 122 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc-----CCCeeeccHH
Confidence 3445699999999999987776654 123333 9999999999999999999987 6677777654
Q ss_pred CC------CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHHHhc--CCcE
Q 020071 86 DD------RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA--------------GAQQALRRTMEIYS--NSTR 143 (331)
Q Consensus 86 ~~------~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~--------------~~~~~Ll~~le~~~--~~~~ 143 (331)
+. .+...+++.+..+.. ..+.||+|||+|.+.. ...+.|+..|+... .++.
T Consensus 123 ~~~~~~~g~~~~~l~~~f~~a~~-------~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~ 195 (495)
T TIGR01241 123 DFVEMFVGVGASRVRDLFEQAKK-------NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVI 195 (495)
T ss_pred HHHHHHhcccHHHHHHHHHHHHh-------cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeE
Confidence 32 122344444444332 2356999999988743 12345555555332 3567
Q ss_pred EEEeeCCCCCCChhhhc--cc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH---
Q 020071 144 FALACNVSSKIIEPIQS--RC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG-DMRQALNNLQAT--- 216 (331)
Q Consensus 144 ~I~~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~~~~~l~~~--- 216 (331)
+|.+||.+..+.+++.+ |+ ..+.+++|+.++..++++..++..... ++..+..+++.+.| +.+.+.+.++.+
T Consensus 196 vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~eA~~~ 274 (495)
T TIGR01241 196 VIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLNEAALL 274 (495)
T ss_pred EEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 88889999999999987 54 457999999999999998887655433 34456778877755 444444444332
Q ss_pred --hhCCCccchhhhhhhcC
Q 020071 217 --YSGFRFVNQENVFKVCD 233 (331)
Q Consensus 217 --~~~~~~i~~~~v~~~~~ 233 (331)
..+...|+.+++.+.+.
T Consensus 275 a~~~~~~~i~~~~l~~a~~ 293 (495)
T TIGR01241 275 AARKNKTEITMNDIEEAID 293 (495)
T ss_pred HHHcCCCCCCHHHHHHHHH
Confidence 13556788888876543
No 113
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.74 E-value=1.9e-15 Score=141.05 Aligned_cols=213 Identities=18% Similarity=0.187 Sum_probs=146.1
Q ss_pred hhhhcCCC-CCCccc-cCHH--HHHHHHHHHHc-CCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC
Q 020071 15 WVEKYRPT-KVCDIV-GNLD--AVARLGIIARD-GNMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR 88 (331)
Q Consensus 15 ~~~~~~p~-~~~~~i-g~~~--~~~~l~~~l~~-~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (331)
+.....|. +|++|+ |... +...+...+.. +...+ ++|||++|+|||+|++++++.+.....+..++.+++.+..
T Consensus 277 ~~a~L~~~~TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~ 356 (617)
T PRK14086 277 PTARLNPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFT 356 (617)
T ss_pred ccCCCCCCCCHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence 44455554 888886 4322 33345555543 22223 8999999999999999999987543234455666553321
Q ss_pred C--hHhHHH-HHHHHHhcccCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHHHhcC-CcEEEEeeCCC----CCCChhh
Q 020071 89 G--IDVVRN-KIKMFAQKKVTLPPGKHKVVVLDEADSMTA--GAQQALRRTMEIYSN-STRFALACNVS----SKIIEPI 158 (331)
Q Consensus 89 ~--~~~i~~-~i~~~~~~~~~~~~~~~~vviide~d~l~~--~~~~~Ll~~le~~~~-~~~~I~~~~~~----~~l~~~l 158 (331)
. ...+.+ ....+... .....+++|||++.+.. ..++.|+.+++.... +..+|++++.. ..+.+.|
T Consensus 357 ~el~~al~~~~~~~f~~~-----y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL 431 (617)
T PRK14086 357 NEFINSIRDGKGDSFRRR-----YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRL 431 (617)
T ss_pred HHHHHHHHhccHHHHHHH-----hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHH
Confidence 0 000100 01111111 12357999999999853 346778888875443 45677777764 3567889
Q ss_pred hccc---ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh----hCCCccchhhhhhh
Q 020071 159 QSRC---AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY----SGFRFVNQENVFKV 231 (331)
Q Consensus 159 ~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~----~~~~~i~~~~v~~~ 231 (331)
+||+ .++.+.+|+.+....+|++.+...++.++++++++|++...+|+|.+...|..+. .....||.+.+.++
T Consensus 432 ~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~v 511 (617)
T PRK14086 432 RNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIV 511 (617)
T ss_pred HhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHH
Confidence 9995 6789999999999999999999999999999999999999999999998887663 24556887776655
Q ss_pred c
Q 020071 232 C 232 (331)
Q Consensus 232 ~ 232 (331)
+
T Consensus 512 L 512 (617)
T PRK14086 512 L 512 (617)
T ss_pred H
Confidence 4
No 114
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.74 E-value=5.9e-17 Score=135.60 Aligned_cols=188 Identities=21% Similarity=0.250 Sum_probs=129.0
Q ss_pred CCCccc-c--CHHHHHHHHHHHHcCCC--CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHH
Q 020071 23 KVCDIV-G--NLDAVARLGIIARDGNM--PNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKI 97 (331)
Q Consensus 23 ~~~~~i-g--~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i 97 (331)
+|+.++ | ++.+............. +.++||||+|+|||++.+++++++.....+..++.+++.+. ...+.+.+
T Consensus 6 tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f--~~~~~~~~ 83 (219)
T PF00308_consen 6 TFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF--IREFADAL 83 (219)
T ss_dssp SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH--HHHHHHHH
T ss_pred ccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH--HHHHHHHH
Confidence 788875 5 56666666666665332 33899999999999999999998765444555666654322 01111111
Q ss_pred -----HHHHhcccCCCCCCceEEEEeCCCCCCHHH--HHHHHHHHHHhc-CCcEEEEeeCCC----CCCChhhhcc---c
Q 020071 98 -----KMFAQKKVTLPPGKHKVVVLDEADSMTAGA--QQALRRTMEIYS-NSTRFALACNVS----SKIIEPIQSR---C 162 (331)
Q Consensus 98 -----~~~~~~~~~~~~~~~~vviide~d~l~~~~--~~~Ll~~le~~~-~~~~~I~~~~~~----~~l~~~l~sr---~ 162 (331)
..+... .....+++|||++.+.... ++.|..+++... .+..+|++++.. ..+.+.++|| +
T Consensus 84 ~~~~~~~~~~~-----~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~G 158 (219)
T PF00308_consen 84 RDGEIEEFKDR-----LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWG 158 (219)
T ss_dssp HTTSHHHHHHH-----HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCS
T ss_pred Hcccchhhhhh-----hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhc
Confidence 111110 1246799999999997644 788888887542 345778887543 3456889999 5
Q ss_pred ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh
Q 020071 163 AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY 217 (331)
Q Consensus 163 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~ 217 (331)
.++.+.||+.++..+++++.+...|+.++++++++|++...+|+|.+...++.+.
T Consensus 159 l~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 159 LVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRLD 213 (219)
T ss_dssp EEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHHH
T ss_pred chhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999998763
No 115
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.74 E-value=3e-16 Score=144.08 Aligned_cols=210 Identities=13% Similarity=0.184 Sum_probs=144.7
Q ss_pred cCCC-CCCccc-cCHH--HHHHHHHHHHc-----C-CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC
Q 020071 19 YRPT-KVCDIV-GNLD--AVARLGIIARD-----G-NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR 88 (331)
Q Consensus 19 ~~p~-~~~~~i-g~~~--~~~~l~~~l~~-----~-~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (331)
..|. +|++++ |... +...+.++.+. + ...+++||||+|+|||++++++++.+.+. +..++.+++...
T Consensus 104 l~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~~~f- 180 (445)
T PRK12422 104 LDPLMTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRSELF- 180 (445)
T ss_pred CCccccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeHHHH-
Confidence 4454 888876 5333 33455555542 2 22348999999999999999999998654 344555554321
Q ss_pred ChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHHHh-cCCcEEEEeeCCC----CCCChhhhcc
Q 020071 89 GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA--GAQQALRRTMEIY-SNSTRFALACNVS----SKIIEPIQSR 161 (331)
Q Consensus 89 ~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~--~~~~~Ll~~le~~-~~~~~~I~~~~~~----~~l~~~l~sr 161 (331)
...+.+.+..-....+........+++|||++.+.. ..++.|..++... ..+..+|++++.. ..+.+.++||
T Consensus 181 -~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR 259 (445)
T PRK12422 181 -TEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISR 259 (445)
T ss_pred -HHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhh
Confidence 011111111000000000023467999999999854 4577777776532 2356788887764 3567899999
Q ss_pred c---ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-------hCCCccchhhhhhh
Q 020071 162 C---AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-------SGFRFVNQENVFKV 231 (331)
Q Consensus 162 ~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-------~~~~~i~~~~v~~~ 231 (331)
+ .++.+.||+.++...++++.+...++.++++++++|+....+|+|.+.+.++.++ ..+..||.+.+.++
T Consensus 260 ~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~ 339 (445)
T PRK12422 260 FEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKAL 339 (445)
T ss_pred hcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHH
Confidence 8 6889999999999999999999999999999999999999999999999998762 13456888877765
Q ss_pred c
Q 020071 232 C 232 (331)
Q Consensus 232 ~ 232 (331)
+
T Consensus 340 l 340 (445)
T PRK12422 340 L 340 (445)
T ss_pred H
Confidence 4
No 116
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.73 E-value=2.5e-15 Score=138.41 Aligned_cols=208 Identities=15% Similarity=0.195 Sum_probs=143.1
Q ss_pred cCCC-CCCccc-cCH--HHHHHHHHHHHc-CCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhH
Q 020071 19 YRPT-KVCDIV-GNL--DAVARLGIIARD-GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVV 93 (331)
Q Consensus 19 ~~p~-~~~~~i-g~~--~~~~~l~~~l~~-~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i 93 (331)
+.|. +|++++ |.. .+.....+...+ +..++++||||+|+|||++++++++.+.....+..++.+++.+. ...+
T Consensus 98 l~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f--~~~~ 175 (440)
T PRK14088 98 LNPDYTFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF--LNDL 175 (440)
T ss_pred CCCCCcccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH--HHHH
Confidence 3443 788876 533 344455555553 33345999999999999999999998865444455666665431 1111
Q ss_pred HHHH-----HHHHhcccCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHHHhc-CCcEEEEeeCCC-C---CCChhhhcc
Q 020071 94 RNKI-----KMFAQKKVTLPPGKHKVVVLDEADSMTA--GAQQALRRTMEIYS-NSTRFALACNVS-S---KIIEPIQSR 161 (331)
Q Consensus 94 ~~~i-----~~~~~~~~~~~~~~~~vviide~d~l~~--~~~~~Ll~~le~~~-~~~~~I~~~~~~-~---~l~~~l~sr 161 (331)
...+ ..+... + .....+++|||++.+.. ..++.|..++.... .+..+|++++.. . .+.+.++||
T Consensus 176 ~~~~~~~~~~~f~~~-~---~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR 251 (440)
T PRK14088 176 VDSMKEGKLNEFREK-Y---RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSR 251 (440)
T ss_pred HHHHhcccHHHHHHH-H---HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhH
Confidence 1111 111110 0 11356999999998743 34667777766433 234567766543 2 456789999
Q ss_pred cc---eeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh----hCCCccchhhhhhhc
Q 020071 162 CA---IVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY----SGFRFVNQENVFKVC 232 (331)
Q Consensus 162 ~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~----~~~~~i~~~~v~~~~ 232 (331)
+. ++.+.||+.+....++++.+...++.++++.+++|++...||+|.+...+..+. ..+..||.+.+.+++
T Consensus 252 ~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L 329 (440)
T PRK14088 252 FQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLL 329 (440)
T ss_pred HhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 75 789999999999999999999999999999999999999999999999887663 345668887776654
No 117
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.73 E-value=3.9e-16 Score=141.81 Aligned_cols=196 Identities=20% Similarity=0.240 Sum_probs=131.1
Q ss_pred CCCCccccCHHHHHHHHHHHHc-----------C-CCC-eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC
Q 020071 22 TKVCDIVGNLDAVARLGIIARD-----------G-NMP-NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR 88 (331)
Q Consensus 22 ~~~~~~ig~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (331)
..|+++.|.+..++.+...+.. | ..| ++|||||||||||++|+++++.+ +.+++.+++.+..
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~-----~~~~i~v~~~~l~ 202 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET-----NATFIRVVGSELV 202 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh-----CCCEEEeehHHHh
Confidence 3788999999999998887632 1 223 39999999999999999999998 5667777765431
Q ss_pred C------hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHHHh-----cCCcEEEE
Q 020071 89 G------IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT-----------AGAQQALRRTMEIY-----SNSTRFAL 146 (331)
Q Consensus 89 ~------~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~-----------~~~~~~Ll~~le~~-----~~~~~~I~ 146 (331)
. ...+++.+.... ...+.+|+|||+|.+. .+.+..+..++.+. ..++.+|+
T Consensus 203 ~~~~g~~~~~i~~~f~~a~-------~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~ 275 (389)
T PRK03992 203 QKFIGEGARLVRELFELAR-------EKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIA 275 (389)
T ss_pred HhhccchHHHHHHHHHHHH-------hcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEE
Confidence 1 122233332222 2235799999999883 33455566666432 24678999
Q ss_pred eeCCCCCCChhhhc--cc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH---h--
Q 020071 147 ACNVSSKIIEPIQS--RC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG-DMRQALNNLQAT---Y-- 217 (331)
Q Consensus 147 ~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~~~~~l~~~---~-- 217 (331)
+||.+..+.+++.+ |+ ..+.|++|+.++..++++..++...+. ++.....++..+.| +.+.+..++..+ +
T Consensus 276 aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~ 354 (389)
T PRK03992 276 ATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEGASGADLKAICTEAGMFAIR 354 (389)
T ss_pred ecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999875 65 458999999999999999877654432 12346677777655 334444444332 2
Q ss_pred hCCCccchhhhhh
Q 020071 218 SGFRFVNQENVFK 230 (331)
Q Consensus 218 ~~~~~i~~~~v~~ 230 (331)
.+...|+.+++.+
T Consensus 355 ~~~~~i~~~d~~~ 367 (389)
T PRK03992 355 DDRTEVTMEDFLK 367 (389)
T ss_pred cCCCCcCHHHHHH
Confidence 2334456555544
No 118
>PRK14700 recombination factor protein RarA; Provisional
Probab=99.73 E-value=5e-16 Score=131.81 Aligned_cols=145 Identities=19% Similarity=0.146 Sum_probs=122.7
Q ss_pred CcEEEEeeC--CCCCCChhhhcccceeeecCCCHHHHHHHHHHHHHhc------CCCCCHHHHHHHHHhcCCCHHHHHHH
Q 020071 141 STRFALACN--VSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE------KVPYVPEGLEAIIFTADGDMRQALNN 212 (331)
Q Consensus 141 ~~~~I~~~~--~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~------~~~i~~~~~~~l~~~~~g~~r~~~~~ 212 (331)
.+.+|.+|+ ....+.++|+|||+++.|.|++.+++..++++.+... .+.+++++++.|++.++||.|.++|.
T Consensus 8 ~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN~ 87 (300)
T PRK14700 8 KIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILNL 87 (300)
T ss_pred cEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHHH
Confidence 455666543 3478999999999999999999999999999988642 36799999999999999999999999
Q ss_pred HHHHhh---CCC--ccchhhhhhhcC----------CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 020071 213 LQATYS---GFR--FVNQENVFKVCD----------QPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLF 277 (331)
Q Consensus 213 l~~~~~---~~~--~i~~~~v~~~~~----------~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~ 277 (331)
|+.+.. ... .||.+.+.+.+. ..+++.+..+++++.+.|.++|+.|+..|+..|++|..|.+.|.
T Consensus 88 LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLi 167 (300)
T PRK14700 88 LERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRML 167 (300)
T ss_pred HHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 998542 122 389888887663 35778899999999999999999999999999999999999998
Q ss_pred HHHHh-ccc
Q 020071 278 RIIKN-YEM 285 (331)
Q Consensus 278 ~~~~~-~~~ 285 (331)
..+.+ +|+
T Consensus 168 i~AsEDIGl 176 (300)
T PRK14700 168 CIASEDIGN 176 (300)
T ss_pred HHHHhhccC
Confidence 87765 565
No 119
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.72 E-value=6.6e-16 Score=132.06 Aligned_cols=119 Identities=23% Similarity=0.235 Sum_probs=101.3
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCC------------CCCCChhhhcccceeeecCCCHHHHHHHH
Q 020071 112 HKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNV------------SSKIIEPIQSRCAIVRFSRLSDEEILSRL 179 (331)
Q Consensus 112 ~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~------------~~~l~~~l~sr~~~i~~~~~~~~~~~~~l 179 (331)
+.|+||||+|.|.-++...|.+.||+.-.- .+|+++|. |.-++..+.+|..++...|++.+++++++
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi 370 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESELAP-IIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREII 370 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhcccCc-EEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHH
Confidence 679999999999999999999999974432 35666664 46789999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHH---h--hCCCccchhhhhhh
Q 020071 180 MVVVQEEKVPYVPEGLEAIIFTA-DGDMRQALNNLQAT---Y--SGFRFVNQENVFKV 231 (331)
Q Consensus 180 ~~~~~~~~~~i~~~~~~~l~~~~-~g~~r~~~~~l~~~---~--~~~~~i~~~~v~~~ 231 (331)
+.+++.+++.++++++++|+... ..++|-++++|.-+ + .++..+..++|.++
T Consensus 371 ~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a 428 (450)
T COG1224 371 RIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERA 428 (450)
T ss_pred HHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHH
Confidence 99999999999999999999886 46999999999633 2 45668888888763
No 120
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.72 E-value=1.1e-15 Score=141.14 Aligned_cols=200 Identities=17% Similarity=0.156 Sum_probs=137.5
Q ss_pred CCCCCccccCHHHHHHHHHHHH--------cC-CCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC--
Q 020071 21 PTKVCDIVGNLDAVARLGIIAR--------DG-NMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR-- 88 (331)
Q Consensus 21 p~~~~~~ig~~~~~~~l~~~l~--------~~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~-- 88 (331)
+.+|+++.|.+.+++.+..... .| ..|. +|||||||||||.+|+++++.+ +.+++.++++...
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~-----~~~~~~l~~~~l~~~ 298 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW-----QLPLLRLDVGKLFGG 298 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEEhHHhccc
Confidence 4578999999988887765321 12 2233 9999999999999999999998 7788888765421
Q ss_pred --C--hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH------------HHHHHHHHHHHHhcCCcEEEEeeCCCC
Q 020071 89 --G--IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA------------GAQQALRRTMEIYSNSTRFALACNVSS 152 (331)
Q Consensus 89 --~--~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~------------~~~~~Ll~~le~~~~~~~~I~~~~~~~ 152 (331)
+ ...+++.+..+.. ..+.|++|||+|.+.. .....|+..+++....+.+|.+||++.
T Consensus 299 ~vGese~~l~~~f~~A~~-------~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~ 371 (489)
T CHL00195 299 IVGESESRMRQMIRIAEA-------LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNID 371 (489)
T ss_pred ccChHHHHHHHHHHHHHh-------cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChh
Confidence 1 2234444443322 2367999999997632 123556777777666778888999999
Q ss_pred CCChhhhc--cc-ceeeecCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHhcCC----CHHHHHHHHHHH-hhCCCcc
Q 020071 153 KIIEPIQS--RC-AIVRFSRLSDEEILSRLMVVVQEEKVP-YVPEGLEAIIFTADG----DMRQALNNLQAT-YSGFRFV 223 (331)
Q Consensus 153 ~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~~~~l~~~~~g----~~r~~~~~l~~~-~~~~~~i 223 (331)
.+++++.+ |+ ..+.++.|+.++..++++..+++.+.. .++..++.+++.+.| ++..++...-.. ....+.+
T Consensus 372 ~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~~l 451 (489)
T CHL00195 372 LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKREF 451 (489)
T ss_pred hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 99999976 66 457899999999999999888775432 345557888888755 444433332211 2344566
Q ss_pred chhhhhhhc
Q 020071 224 NQENVFKVC 232 (331)
Q Consensus 224 ~~~~v~~~~ 232 (331)
+.+++...+
T Consensus 452 t~~dl~~a~ 460 (489)
T CHL00195 452 TTDDILLAL 460 (489)
T ss_pred CHHHHHHHH
Confidence 766665543
No 121
>CHL00176 ftsH cell division protein; Validated
Probab=99.72 E-value=4.6e-16 Score=148.07 Aligned_cols=200 Identities=22% Similarity=0.223 Sum_probs=138.5
Q ss_pred CCCCCccccCHHHHHHHHHHHHc-----------CCCC-eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC
Q 020071 21 PTKVCDIVGNLDAVARLGIIARD-----------GNMP-NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR 88 (331)
Q Consensus 21 p~~~~~~ig~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (331)
..+|+|++|.++.++.+...+.. ...| ++||+||||+|||++|++++... +.+++.+++++..
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~-----~~p~i~is~s~f~ 253 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----EVPFFSISGSEFV 253 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeeeccHHHHH
Confidence 35899999999999887666521 1223 49999999999999999999987 6677777765431
Q ss_pred ------ChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC-----------HHHH---HHHHHHHHHh--cCCcEEEE
Q 020071 89 ------GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT-----------AGAQ---QALRRTMEIY--SNSTRFAL 146 (331)
Q Consensus 89 ------~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~-----------~~~~---~~Ll~~le~~--~~~~~~I~ 146 (331)
+...+++.+..+. ...+.+++|||+|.+. .+.. +.|+..++.. ..++++|.
T Consensus 254 ~~~~g~~~~~vr~lF~~A~-------~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIa 326 (638)
T CHL00176 254 EMFVGVGAARVRDLFKKAK-------ENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIA 326 (638)
T ss_pred HHhhhhhHHHHHHHHHHHh-------cCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEE
Confidence 1223333333322 2346799999999883 2223 3444444432 34677888
Q ss_pred eeCCCCCCChhhhcc--c-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHh-----
Q 020071 147 ACNVSSKIIEPIQSR--C-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG-DMRQALNNLQATY----- 217 (331)
Q Consensus 147 ~~~~~~~l~~~l~sr--~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~~~~~l~~~~----- 217 (331)
+||.+..+.+++.++ + ..+.+++|+.++..++++..++.... .++..+..+++.+.| +.+.+.+.++.++
T Consensus 327 aTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r 405 (638)
T CHL00176 327 ATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLLNEAAILTAR 405 (638)
T ss_pred ecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 899989999999874 3 56899999999999999998876442 345567889988876 5555555554332
Q ss_pred hCCCccchhhhhhhcC
Q 020071 218 SGFRFVNQENVFKVCD 233 (331)
Q Consensus 218 ~~~~~i~~~~v~~~~~ 233 (331)
.+...|+.+++.+.+.
T Consensus 406 ~~~~~It~~dl~~Ai~ 421 (638)
T CHL00176 406 RKKATITMKEIDTAID 421 (638)
T ss_pred hCCCCcCHHHHHHHHH
Confidence 3455688888876543
No 122
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.71 E-value=1.7e-15 Score=136.30 Aligned_cols=200 Identities=18% Similarity=0.269 Sum_probs=135.2
Q ss_pred CCchhhhcCCCCCCccccCHHHHHHHHHHHH-----cCCCCe--EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeec
Q 020071 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIAR-----DGNMPN--LILAGPPGTGKTTSILALAHELLGPNYREAVMELNA 84 (331)
Q Consensus 12 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~-----~~~~~~--~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 84 (331)
..+|.+||+|.+.+++.-|..-+..++.|++ ..+.++ +||+||+|+||||.++.+++.+ +..+.+...
T Consensus 69 ~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel-----g~~~~Ew~N 143 (634)
T KOG1970|consen 69 FELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL-----GYQLIEWSN 143 (634)
T ss_pred cchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh-----CceeeeecC
Confidence 3479999999999999999999999999999 566666 6999999999999999999999 444443321
Q ss_pred C-----------CC--CC------hHhHHHHHHHHHh-----cccCCCCCCceEEEEeCCCCCCHH-HHHHHHHHHH---
Q 020071 85 S-----------DD--RG------IDVVRNKIKMFAQ-----KKVTLPPGKHKVVVLDEADSMTAG-AQQALRRTME--- 136 (331)
Q Consensus 85 ~-----------~~--~~------~~~i~~~i~~~~~-----~~~~~~~~~~~vviide~d~l~~~-~~~~Ll~~le--- 136 (331)
+ +. .+ .......+..... ....-..+.+++++|||+-..... ....+...|.
T Consensus 144 pi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~~y~ 223 (634)
T KOG1970|consen 144 PINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLRLYV 223 (634)
T ss_pred CccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHHHHHH
Confidence 0 00 00 1111112222211 111111345679999997655322 3334444333
Q ss_pred -HhcCCcEEEEeeCCC--------CCCChh--hhcccceeeecCCCHHHHHHHHHHHHHhcCCCCC------HHHHHHHH
Q 020071 137 -IYSNSTRFALACNVS--------SKIIEP--IQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV------PEGLEAII 199 (331)
Q Consensus 137 -~~~~~~~~I~~~~~~--------~~l~~~--l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~------~~~~~~l~ 199 (331)
.+..-++||++ +.. ...... ..-|...+.|.|+.+.-+.+.|..+|..++...+ ...++.++
T Consensus 224 s~g~~PlIf~iT-d~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~ 302 (634)
T KOG1970|consen 224 SIGRCPLIFIIT-DSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELIC 302 (634)
T ss_pred hcCCCcEEEEEe-ccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHH
Confidence 33333334443 221 122233 3445678999999999999999999998877666 56789999
Q ss_pred HhcCCCHHHHHHHHHHHh
Q 020071 200 FTADGDMRQALNNLQATY 217 (331)
Q Consensus 200 ~~~~g~~r~~~~~l~~~~ 217 (331)
..++||+|.|++.||..+
T Consensus 303 ~~s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 303 QGSGGDIRSAINSLQLSS 320 (634)
T ss_pred HhcCccHHHHHhHhhhhc
Confidence 999999999999999763
No 123
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.71 E-value=5.1e-16 Score=141.33 Aligned_cols=204 Identities=20% Similarity=0.230 Sum_probs=134.9
Q ss_pred chhhhcCCCCCCccccCHHHHHHHHHHHHc-----------C-CCC-eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceE
Q 020071 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARD-----------G-NMP-NLILAGPPGTGKTTSILALAHELLGPNYREAVM 80 (331)
Q Consensus 14 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~ 80 (331)
.+.+++.+.+|+|+.|.+..++.+...+.- | ..| +++||||||||||++|+++++.+ ..+++
T Consensus 172 ~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el-----~~~fi 246 (438)
T PTZ00361 172 MKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET-----SATFL 246 (438)
T ss_pred cccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh-----CCCEE
Confidence 356677778999999999999998887752 1 222 38999999999999999999988 55677
Q ss_pred EeecCCCCC------hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHHH-----h
Q 020071 81 ELNASDDRG------IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT-----------AGAQQALRRTMEI-----Y 138 (331)
Q Consensus 81 ~~~~~~~~~------~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~-----------~~~~~~Ll~~le~-----~ 138 (331)
.+.+++... ...+++.+..+. ...+.+++|||+|.+. .+.+..++.++.. .
T Consensus 247 ~V~~seL~~k~~Ge~~~~vr~lF~~A~-------~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 247 RVVGSELIQKYLGDGPKLVRELFRVAE-------ENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred EEecchhhhhhcchHHHHHHHHHHHHH-------hCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 776554311 112333333222 2346799999998763 1234444444432 2
Q ss_pred cCCcEEEEeeCCCCCCChhhhc--cc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcC----CCHHHHHH
Q 020071 139 SNSTRFALACNVSSKIIEPIQS--RC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTAD----GDMRQALN 211 (331)
Q Consensus 139 ~~~~~~I~~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~----g~~r~~~~ 211 (331)
..++.+|++||....+.+++.+ |+ ..+.|++|+.++..++++....+..+. ++..+..++..+. .+++.++.
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-~dvdl~~la~~t~g~sgAdI~~i~~ 398 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-EDVDLEEFIMAKDELSGADIKAICT 398 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-cCcCHHHHHHhcCCCCHHHHHHHHH
Confidence 4578899999999999998875 54 458999999999999999877665432 1223455665543 34444433
Q ss_pred HHHHHh--hCCCccchhhhhh
Q 020071 212 NLQATY--SGFRFVNQENVFK 230 (331)
Q Consensus 212 ~l~~~~--~~~~~i~~~~v~~ 230 (331)
.....+ .+...|+.+++.+
T Consensus 399 eA~~~Alr~~r~~Vt~~D~~~ 419 (438)
T PTZ00361 399 EAGLLALRERRMKVTQADFRK 419 (438)
T ss_pred HHHHHHHHhcCCccCHHHHHH
Confidence 332222 3445677777655
No 124
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=5.8e-16 Score=142.13 Aligned_cols=183 Identities=20% Similarity=0.213 Sum_probs=135.4
Q ss_pred CCCCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCC
Q 020071 20 RPTKVCDIVGNLDAVARLGIIARD-----------G-NMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASD 86 (331)
Q Consensus 20 ~p~~~~~~ig~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (331)
...+|+||-|+++.+..++..+.. | ..|. ||||||||||||++|+++++.. +.+|+.+.+++
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~-----~~nFlsvkgpE 503 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA-----GMNFLSVKGPE 503 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh-----cCCeeeccCHH
Confidence 455899999999999999877653 3 3333 9999999999999999999998 77788876654
Q ss_pred C------CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHH-----------HHHHHHHHHHH--hcCCcEEEEe
Q 020071 87 D------RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG-----------AQQALRRTMEI--YSNSTRFALA 147 (331)
Q Consensus 87 ~------~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~-----------~~~~Ll~~le~--~~~~~~~I~~ 147 (331)
. .+...+++.+..+.+.+ ..|+|+||+|.+..+ ..+.|+.-|+. -..++.+|.+
T Consensus 504 L~sk~vGeSEr~ir~iF~kAR~~a-------P~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAA 576 (693)
T KOG0730|consen 504 LFSKYVGESERAIREVFRKARQVA-------PCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAA 576 (693)
T ss_pred HHHHhcCchHHHHHHHHHHHhhcC-------CeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEec
Confidence 3 23346667666655543 479999999988432 24455555552 2356778888
Q ss_pred eCCCCCCChhhhc--cc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHH
Q 020071 148 CNVSSKIIEPIQS--RC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPE-GLEAIIFTADG-DMRQALNNLQAT 216 (331)
Q Consensus 148 ~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~~~g-~~r~~~~~l~~~ 216 (331)
||.+..+.+++.+ |+ ..+.+++|+.+-..++++..+++-. ++++ .++.|++.+.| +-..+.+.++.+
T Consensus 577 TNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp--~~~~vdl~~La~~T~g~SGAel~~lCq~A 648 (693)
T KOG0730|consen 577 TNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP--FSEDVDLEELAQATEGYSGAEIVAVCQEA 648 (693)
T ss_pred cCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC--CCccccHHHHHHHhccCChHHHHHHHHHH
Confidence 9999999999999 66 5679999999999999998876554 4444 68889987765 445555555544
No 125
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.70 E-value=9.5e-16 Score=132.16 Aligned_cols=187 Identities=17% Similarity=0.160 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhH-H--------HHHHHHH-
Q 020071 32 DAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVV-R--------NKIKMFA- 101 (331)
Q Consensus 32 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~--------~~i~~~~- 101 (331)
+..+.+..++..+. +++|+||+|+|||++|+.+++.+ +.+++.+++........+ . .....+.
T Consensus 9 ~l~~~~l~~l~~g~--~vLL~G~~GtGKT~lA~~la~~l-----g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~ 81 (262)
T TIGR02640 9 RVTSRALRYLKSGY--PVHLRGPAGTGKTTLAMHVARKR-----DRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIH 81 (262)
T ss_pred HHHHHHHHHHhcCC--eEEEEcCCCCCHHHHHHHHHHHh-----CCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHH
Confidence 34556666666665 59999999999999999999977 667777776543221111 0 0111110
Q ss_pred --------------hcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh----------------cCCcEEEEeeCCC
Q 020071 102 --------------QKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY----------------SNSTRFALACNVS 151 (331)
Q Consensus 102 --------------~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~----------------~~~~~~I~~~~~~ 151 (331)
..++......+.+++|||+++++++.++.|+.+|++. ++++++|+++|..
T Consensus 82 ~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~ 161 (262)
T TIGR02640 82 NVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV 161 (262)
T ss_pred HhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc
Confidence 1111100123569999999999999999999999742 2467889998864
Q ss_pred -----CCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcC----------CCHHHHHHHHHHH
Q 020071 152 -----SKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTAD----------GDMRQALNNLQAT 216 (331)
Q Consensus 152 -----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~----------g~~r~~~~~l~~~ 216 (331)
..+.+.+.+||..+.+..|+.++..+++.... .++++.++.+++... -.+|.++...+.+
T Consensus 162 ~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~ 236 (262)
T TIGR02640 162 EYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT-----DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVA 236 (262)
T ss_pred cccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHH
Confidence 35688999999999999999999999988754 467777776665431 1366666666655
Q ss_pred hh--CCCccchhhhhh
Q 020071 217 YS--GFRFVNQENVFK 230 (331)
Q Consensus 217 ~~--~~~~i~~~~v~~ 230 (331)
.. ....++.+++.+
T Consensus 237 ~~~~~~~~~~~~~~~~ 252 (262)
T TIGR02640 237 TQQDIPVDVDDEDFVD 252 (262)
T ss_pred HHcCCCCCCCcHHHHH
Confidence 32 223445554443
No 126
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.70 E-value=2.1e-16 Score=125.93 Aligned_cols=133 Identities=17% Similarity=0.142 Sum_probs=112.9
Q ss_pred CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCC
Q 020071 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKII 155 (331)
Q Consensus 76 ~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~ 155 (331)
+...+.+-..+..+++++++.++.....+. ..+ +||+++|.++..++|+|++++|+||.++.||++|+++.+++
T Consensus 25 ~~~~~~~f~~~~i~Vd~iReii~~~~~~~~-----~~k-~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~ll 98 (206)
T PRK08485 25 GKKNLRFFIKEEFKIEDAKEVIAEAYIAES-----EEK-IIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLL 98 (206)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHhhCCC-----CcE-EEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCc
Confidence 344444445556799999999988777652 344 46789999999999999999999999999999999999999
Q ss_pred hhhhcccce-------------eeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 020071 156 EPIQSRCAI-------------VRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQA 215 (331)
Q Consensus 156 ~~l~sr~~~-------------i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~ 215 (331)
+|++|||+. +.|.+++.+++.+++.+ ..++++...+++.+.|++.+.|.+|.++...+.
T Consensus 99 pTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q 170 (206)
T PRK08485 99 PTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLNEE 170 (206)
T ss_pred hHHHhhheeccccccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccHH
Confidence 999999986 77999999999999998 677888788889999999999999888766654
No 127
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.69 E-value=4.4e-16 Score=153.12 Aligned_cols=179 Identities=21% Similarity=0.270 Sum_probs=125.7
Q ss_pred ccccCHHHHHHHHHHHHc------CCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHH-----
Q 020071 26 DIVGNLDAVARLGIIARD------GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVR----- 94 (331)
Q Consensus 26 ~~ig~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~----- 94 (331)
+++|++.+++.+..++.. ...++++|+||||+|||++|+.+++.+ +.+++.++.........+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l-----~~~~~~i~~~~~~~~~~i~g~~~~ 395 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL-----NRKFVRFSLGGVRDEAEIRGHRRT 395 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh-----cCCeEEEeCCCcccHHHHcCCCCc
Confidence 588999999988876542 133468999999999999999999998 5566666654322111111
Q ss_pred -------HHHHHHHhcccCCCCCCceEEEEeCCCCCCHH----HHHHHHHHHHHh---------------cCCcEEEEee
Q 020071 95 -------NKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG----AQQALRRTMEIY---------------SNSTRFALAC 148 (331)
Q Consensus 95 -------~~i~~~~~~~~~~~~~~~~vviide~d~l~~~----~~~~Ll~~le~~---------------~~~~~~I~~~ 148 (331)
...+.+... .....|++|||+|.++.. ..++|+.+++.. ..++.||+++
T Consensus 396 ~~g~~~g~i~~~l~~~-----~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~Tt 470 (775)
T TIGR00763 396 YVGAMPGRIIQGLKKA-----KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATA 470 (775)
T ss_pred eeCCCCchHHHHHHHh-----CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEec
Confidence 111111111 123359999999999753 347899888731 1357889999
Q ss_pred CCCCCCChhhhcccceeeecCCCHHHHHHHHHHHH-----Hhc-----CCCCCHHHHHHHHHhcC--CCHHHHHHHHH
Q 020071 149 NVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV-----QEE-----KVPYVPEGLEAIIFTAD--GDMRQALNNLQ 214 (331)
Q Consensus 149 ~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~-----~~~-----~~~i~~~~~~~l~~~~~--g~~r~~~~~l~ 214 (331)
|....+++++++||.++.|++++.++...+++..+ +.. ++.++++++..|++... ...|.+...++
T Consensus 471 N~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~ 548 (775)
T TIGR00763 471 NSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIE 548 (775)
T ss_pred CCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHH
Confidence 99999999999999999999999999888876653 222 45789999999987432 34455444443
No 128
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.69 E-value=2.5e-15 Score=135.95 Aligned_cols=197 Identities=18% Similarity=0.220 Sum_probs=131.3
Q ss_pred CCCCCccccCHHHHHHHHHHHHc-----------C-CCC-eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC
Q 020071 21 PTKVCDIVGNLDAVARLGIIARD-----------G-NMP-NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD 87 (331)
Q Consensus 21 p~~~~~~ig~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (331)
+.+|+|+.|.+..++.++..+.. | ..| +++||||||+|||++|+++++.+ ...++.+.++..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l-----~~~fi~i~~s~l 215 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT-----TATFIRVVGSEF 215 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc-----CCCEEEEehHHH
Confidence 44899999999999988887642 2 122 39999999999999999999987 556666654332
Q ss_pred C------ChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHH---HH--hcCCcEEE
Q 020071 88 R------GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA-----------GAQQALRRTM---EI--YSNSTRFA 145 (331)
Q Consensus 88 ~------~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~-----------~~~~~Ll~~l---e~--~~~~~~~I 145 (331)
. +...+++.+..+. ...+.+|+|||+|.+.. ..+..+..++ +. ...++.+|
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~-------~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI 288 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLAR-------ENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVI 288 (398)
T ss_pred HHHhcchhHHHHHHHHHHHH-------hcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 1 1122333333222 23467999999997631 2333444444 32 23467899
Q ss_pred EeeCCCCCCChhhhc--cc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHh----
Q 020071 146 LACNVSSKIIEPIQS--RC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG-DMRQALNNLQATY---- 217 (331)
Q Consensus 146 ~~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~~~~~l~~~~---- 217 (331)
++||.++.+.+++.+ |+ ..+.|++|+.++...+++....+.++. ++-.+..++..+.| +...+.+++..+.
T Consensus 289 ~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~ 367 (398)
T PTZ00454 289 MATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEKISAADIAAICQEAGMQAV 367 (398)
T ss_pred EecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999876 55 447999999999999998877765543 22346677777654 5555555555432
Q ss_pred -hCCCccchhhhhh
Q 020071 218 -SGFRFVNQENVFK 230 (331)
Q Consensus 218 -~~~~~i~~~~v~~ 230 (331)
.+...|+.+++.+
T Consensus 368 r~~~~~i~~~df~~ 381 (398)
T PTZ00454 368 RKNRYVILPKDFEK 381 (398)
T ss_pred HcCCCccCHHHHHH
Confidence 2334566665544
No 129
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.67 E-value=3.6e-15 Score=134.96 Aligned_cols=202 Identities=19% Similarity=0.197 Sum_probs=129.3
Q ss_pred CCCCCccccCHHHHHHHHHHHHcC------------C-CCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC
Q 020071 21 PTKVCDIVGNLDAVARLGIIARDG------------N-MPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD 87 (331)
Q Consensus 21 p~~~~~~ig~~~~~~~l~~~l~~~------------~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (331)
...|+++.|.+..++.+...+... . ..+++||||||+|||++|+++++.+ ...++.+.+...
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l-----~~~~~~v~~~~l 192 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET-----NATFIRVVGSEL 192 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC-----CCCEEecchHHH
Confidence 447889999999999998876421 1 2239999999999999999999988 455666554322
Q ss_pred CC--hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHHHh-----cCCcEEEEeeC
Q 020071 88 RG--IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT-----------AGAQQALRRTMEIY-----SNSTRFALACN 149 (331)
Q Consensus 88 ~~--~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~-----------~~~~~~Ll~~le~~-----~~~~~~I~~~~ 149 (331)
.. .......+.......- ...+.+|+|||+|.+. ...+..+..++.+. ..++.+|++||
T Consensus 193 ~~~~~g~~~~~i~~~f~~a~---~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn 269 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELAK---EKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATN 269 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHH---hcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecC
Confidence 10 0011111111111111 2235699999999873 23345555555432 35788999999
Q ss_pred CCCCCChhhhc--cc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH---h--hCC
Q 020071 150 VSSKIIEPIQS--RC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG-DMRQALNNLQAT---Y--SGF 220 (331)
Q Consensus 150 ~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~~~~~l~~~---~--~~~ 220 (331)
.+..+.+++.+ |+ ..+.|++|+.++..++++......... ++.....+++.+.| +.+.+.+.+..+ + .+.
T Consensus 270 ~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~ 348 (364)
T TIGR01242 270 RPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEGASGADLKAICTEAGMFAIREER 348 (364)
T ss_pred ChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 99999999875 54 468999999999999998876544322 11246777777755 333444444332 1 344
Q ss_pred Cccchhhhhhh
Q 020071 221 RFVNQENVFKV 231 (331)
Q Consensus 221 ~~i~~~~v~~~ 231 (331)
..|+.+++.++
T Consensus 349 ~~i~~~d~~~a 359 (364)
T TIGR01242 349 DYVTMDDFIKA 359 (364)
T ss_pred CccCHHHHHHH
Confidence 56777766553
No 130
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=3.4e-15 Score=135.65 Aligned_cols=176 Identities=20% Similarity=0.220 Sum_probs=132.9
Q ss_pred CCCccccCHHHHHHHHHHHHc----------CCCC-e-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC--
Q 020071 23 KVCDIVGNLDAVARLGIIARD----------GNMP-N-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR-- 88 (331)
Q Consensus 23 ~~~~~ig~~~~~~~l~~~l~~----------~~~~-~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~-- 88 (331)
.|.++=|.+..+..|..++.. |-.| . +||+||||||||.+|++++.++ +.+|+.++++...
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-----~vPf~~isApeivSG 262 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-----GVPFLSISAPEIVSG 262 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-----CCceEeecchhhhcc
Confidence 588999999999988877643 3333 3 9999999999999999999999 8999999876542
Q ss_pred ----ChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHH-----------HHHHHHHHHHHhc------CCcEEEEe
Q 020071 89 ----GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG-----------AQQALRRTMEIYS------NSTRFALA 147 (331)
Q Consensus 89 ----~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~-----------~~~~Ll~~le~~~------~~~~~I~~ 147 (331)
+.+.+++.+..+... -+.++||||+|.+++. ....|+..|++.. ..+.+|.+
T Consensus 263 vSGESEkkiRelF~~A~~~-------aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgA 335 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSN-------APCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGA 335 (802)
T ss_pred cCcccHHHHHHHHHHHhcc-------CCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEec
Confidence 335677776665543 3679999999999753 2346777777543 45778888
Q ss_pred eCCCCCCChhhhcc--c-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHH
Q 020071 148 CNVSSKIIEPIQSR--C-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALN 211 (331)
Q Consensus 148 ~~~~~~l~~~l~sr--~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~ 211 (331)
||.+..+.++|++- + ..|.+.-|+.....++|+.+|+...+.- +-....|++++.|-.+.-+.
T Consensus 336 TnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~ 401 (802)
T KOG0733|consen 336 TNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLM 401 (802)
T ss_pred CCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHH
Confidence 99999999999874 3 3478888999999999999987544332 22367889988775544333
No 131
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.66 E-value=2.7e-15 Score=130.28 Aligned_cols=103 Identities=23% Similarity=0.269 Sum_probs=78.9
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCC------------CCCCChhhhcccceeeecCCCHHHHHHHH
Q 020071 112 HKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNV------------SSKIIEPIQSRCAIVRFSRLSDEEILSRL 179 (331)
Q Consensus 112 ~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~------------~~~l~~~l~sr~~~i~~~~~~~~~~~~~l 179 (331)
++|+||||+|.|.-+...-|.+.+|.+-. =.+|++||. +.-++..+.+||.++...|++.+|+.+++
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~~s-PiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il 357 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESELS-PIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQIL 357 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTSTT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHH
T ss_pred cceEEecchhhccHHHHHHHHHHhcCCCC-cEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHH
Confidence 67999999999999999999999996543 246677764 45788999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHH
Q 020071 180 MVVVQEEKVPYVPEGLEAIIFTA-DGDMRQALNNLQA 215 (331)
Q Consensus 180 ~~~~~~~~~~i~~~~~~~l~~~~-~g~~r~~~~~l~~ 215 (331)
.-+|+.+++.+++++++.|.+.. ..++|-+++++.-
T Consensus 358 ~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~ 394 (398)
T PF06068_consen 358 KIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITP 394 (398)
T ss_dssp HHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHH
T ss_pred HhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhh
Confidence 99999999999999999999875 5689999988754
No 132
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.66 E-value=1.7e-14 Score=125.47 Aligned_cols=215 Identities=20% Similarity=0.181 Sum_probs=136.2
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC----
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR---- 88 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~---- 88 (331)
.||.....|..|-.--++.++...+...+..+. +.++++||+|+|||++++.+++.+.+... ....+......
T Consensus 11 ~pF~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~l~G~~G~GKTtl~~~l~~~l~~~~~--~~~~~~~~~~~~~~~ 87 (269)
T TIGR03015 11 KPFQLLPDPDFFYPSKGHKRAMAYLEYGLSQRE-GFILITGEVGAGKTTLIRNLLKRLDQERV--VAAKLVNTRVDAEDL 87 (269)
T ss_pred CCCCCCCCHHHhCCCHHHHHHHHHHHHHHhcCC-CEEEEEcCCCCCHHHHHHHHHHhcCCCCe--EEeeeeCCCCCHHHH
Confidence 466666556555555566667777776666543 23799999999999999999998864321 11111110000
Q ss_pred -------------C--hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh---cCCcEEEEeeCC
Q 020071 89 -------------G--IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY---SNSTRFALACNV 150 (331)
Q Consensus 89 -------------~--~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~---~~~~~~I~~~~~ 150 (331)
+ .......+..+..... ..++..+++|||++.++....+.|..+.+.. ...+.++++...
T Consensus 88 l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~ 165 (269)
T TIGR03015 88 LRMVAADFGLETEGRDKAALLRELEDFLIEQF--AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP 165 (269)
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH--hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH
Confidence 0 0000111111111100 1345679999999999988777766544421 122344555432
Q ss_pred C------CCCChhhhcc-cceeeecCCCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHhcCCCHHHHHHHHHHH---
Q 020071 151 S------SKIIEPIQSR-CAIVRFSRLSDEEILSRLMVVVQEEK----VPYVPEGLEAIIFTADGDMRQALNNLQAT--- 216 (331)
Q Consensus 151 ~------~~l~~~l~sr-~~~i~~~~~~~~~~~~~l~~~~~~~~----~~i~~~~~~~l~~~~~g~~r~~~~~l~~~--- 216 (331)
. ..-...+.+| +..+.++|++.+++.+++..++...+ ..+++++++.|++.++|++|.+...+..+
T Consensus 166 ~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~ 245 (269)
T TIGR03015 166 EFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLS 245 (269)
T ss_pred HHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence 1 1113456777 45789999999999999999887654 36899999999999999999977777654
Q ss_pred --hhCCCccchhhhhhhc
Q 020071 217 --YSGFRFVNQENVFKVC 232 (331)
Q Consensus 217 --~~~~~~i~~~~v~~~~ 232 (331)
..+.+.|+.++|..++
T Consensus 246 a~~~~~~~i~~~~v~~~~ 263 (269)
T TIGR03015 246 AFLEEKREIGGEEVREVI 263 (269)
T ss_pred HHHcCCCCCCHHHHHHHH
Confidence 2456678888887643
No 133
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.65 E-value=2.1e-14 Score=118.76 Aligned_cols=189 Identities=17% Similarity=0.181 Sum_probs=136.7
Q ss_pred hcCCCCCCccccCHHHHHHHHHHHH---cCCC-CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhH
Q 020071 18 KYRPTKVCDIVGNLDAVARLGIIAR---DGNM-PNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVV 93 (331)
Q Consensus 18 ~~~p~~~~~~ig~~~~~~~l~~~l~---~~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i 93 (331)
...|..+++++|.++.++.|.+... .|.. .|+|+||+.|||||++++++...+..++ ..++++...+......+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G--LRlIev~k~~L~~l~~l 97 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG--LRLIEVSKEDLGDLPEL 97 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC--ceEEEECHHHhccHHHH
Confidence 3467789999999999987765543 2443 4499999999999999999999987664 56788877766544444
Q ss_pred HHHHHHHHhcccCCCCCCceEEEEeCCCCCCH-HHHHHHHHHHH----HhcCCcEEEEeeCCCCCCChh-----------
Q 020071 94 RNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA-GAQQALRRTME----IYSNSTRFALACNVSSKIIEP----------- 157 (331)
Q Consensus 94 ~~~i~~~~~~~~~~~~~~~~vviide~d~l~~-~~~~~Ll~~le----~~~~~~~~I~~~~~~~~l~~~----------- 157 (331)
.+.+. ..+ .+-||++||...=.. ..-..|..+|| ..|.++.+..|+|...-+...
T Consensus 98 ~~~l~---~~~------~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~e 168 (249)
T PF05673_consen 98 LDLLR---DRP------YKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDE 168 (249)
T ss_pred HHHHh---cCC------CCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccc
Confidence 44433 332 367999999654332 33456666665 577888888888875433322
Q ss_pred ------------hhccc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCH-----HHHHHHHHhcCCCHHHHHHHHHHHh
Q 020071 158 ------------IQSRC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVP-----EGLEAIIFTADGDMRQALNNLQATY 217 (331)
Q Consensus 158 ------------l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~-----~~~~~l~~~~~g~~r~~~~~l~~~~ 217 (331)
|..|+ ..+.|.|++.++..++++..+++.|+.+++ +++++-..+.+-+.|.|.+.++.+.
T Consensus 169 ih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF~~~l~ 246 (249)
T PF05673_consen 169 IHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTARQFIDDLA 246 (249)
T ss_pred cCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 23343 458999999999999999999999999985 3445555555669999999887764
No 134
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.65 E-value=5e-15 Score=144.47 Aligned_cols=214 Identities=20% Similarity=0.232 Sum_probs=144.5
Q ss_pred CCCchhhhcCCCCC---------C-ccccCHHHHHHHHHHHHc------CCCCeEEEeCCCCccHHHHHHHHHHHhcCCC
Q 020071 11 YDIPWVEKYRPTKV---------C-DIVGNLDAVARLGIIARD------GNMPNLILAGPPGTGKTTSILALAHELLGPN 74 (331)
Q Consensus 11 ~~~~~~~~~~p~~~---------~-~~ig~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~ 74 (331)
.++||... .+..+ + +..|++++++++..++.. ...+.++|+||||+|||++++.+++.+
T Consensus 299 ~~~pw~~~-~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l---- 373 (784)
T PRK10787 299 VQVPWNAR-SKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT---- 373 (784)
T ss_pred HhCCCCCC-CcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh----
Confidence 45788664 33332 2 488999999988766552 233448999999999999999999988
Q ss_pred CCCceEEeecCCCCChHhHHHHH------------HHHHhcccCCCCCCceEEEEeCCCCCCHHH----HHHHHHHHHHh
Q 020071 75 YREAVMELNASDDRGIDVVRNKI------------KMFAQKKVTLPPGKHKVVVLDEADSMTAGA----QQALRRTMEIY 138 (331)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~i~~~i------------~~~~~~~~~~~~~~~~vviide~d~l~~~~----~~~Ll~~le~~ 138 (331)
+.+++.++.........+.... ..+... .....|++|||+|+++... +.+|+.+++.-
T Consensus 374 -~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~-----~~~~~villDEidk~~~~~~g~~~~aLlevld~~ 447 (784)
T PRK10787 374 -GRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKV-----GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPE 447 (784)
T ss_pred -CCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhc-----CCCCCEEEEEChhhcccccCCCHHHHHHHHhccc
Confidence 5667777655433322222211 111111 1234699999999998754 58999999731
Q ss_pred ---------------cCCcEEEEeeCCCCCCChhhhcccceeeecCCCHHHHHHHHHHHHH-----h-----cCCCCCHH
Q 020071 139 ---------------SNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ-----E-----EKVPYVPE 193 (331)
Q Consensus 139 ---------------~~~~~~I~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~-----~-----~~~~i~~~ 193 (331)
-.++.||+|+|.. .+++++++||.++.|.+++.++..+++++... + ..+.++++
T Consensus 448 ~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ 526 (784)
T PRK10787 448 QNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDS 526 (784)
T ss_pred cEEEEecccccccccCCceEEEEcCCCC-CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHH
Confidence 1566777777765 59999999999999999999999988877653 1 23568999
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHh--------hC----CCccchhhhhhhcCCCC
Q 020071 194 GLEAIIFTAD--GDMRQALNNLQATY--------SG----FRFVNQENVFKVCDQPH 236 (331)
Q Consensus 194 ~~~~l~~~~~--g~~r~~~~~l~~~~--------~~----~~~i~~~~v~~~~~~~~ 236 (331)
++..+++.+. --.|.+.+.++..+ .. .-.|+.+++.+.++...
T Consensus 527 ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~~~ 583 (784)
T PRK10787 527 AIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQR 583 (784)
T ss_pred HHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCCCc
Confidence 9999997532 12344333333221 11 12578888888777643
No 135
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.65 E-value=6.2e-15 Score=146.32 Aligned_cols=202 Identities=15% Similarity=0.179 Sum_probs=147.2
Q ss_pred CCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCC-----CCCceEEeecCC
Q 020071 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN-----YREAVMELNASD 86 (331)
Q Consensus 12 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~ 86 (331)
..+++++.||..+++++|+++.+..+...+.....++++|+||||+|||++++.+++.+.... .+..++.++...
T Consensus 160 ~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~ 239 (852)
T TIGR03346 160 ARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA 239 (852)
T ss_pred hhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH
Confidence 348999999999999999999999999999888877899999999999999999999874321 123445544322
Q ss_pred C----CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH--------HHHHHHHHHHHHhcCCcEEEEeeCCC---
Q 020071 87 D----RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA--------GAQQALRRTMEIYSNSTRFALACNVS--- 151 (331)
Q Consensus 87 ~----~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~--------~~~~~Ll~~le~~~~~~~~I~~~~~~--- 151 (331)
. ....++.+.+......... ..++.|+||||+|.+.. +..+.|...++. ....+|.+|+..
T Consensus 240 l~a~~~~~g~~e~~l~~~l~~~~~--~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~--g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 240 LIAGAKYRGEFEERLKAVLNEVTK--SEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR--GELHCIGATTLDEYR 315 (852)
T ss_pred HhhcchhhhhHHHHHHHHHHHHHh--cCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc--CceEEEEeCcHHHHH
Confidence 1 0111222232222221100 23478999999998852 345666666643 457788877764
Q ss_pred --CCCChhhhcccceeeecCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhcCC------CHHHHHHHHHHHh
Q 020071 152 --SKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE----EKVPYVPEGLEAIIFTADG------DMRQALNNLQATY 217 (331)
Q Consensus 152 --~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~~~g------~~r~~~~~l~~~~ 217 (331)
....+++.+||+.+.+++|+.++...+++....+ +++.++++++..++.++.+ -|.+|+.+++.++
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~ 393 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAA 393 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHH
Confidence 3568999999999999999999999998876554 4677899999888887753 3899999998764
No 136
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.64 E-value=1.3e-14 Score=129.30 Aligned_cols=209 Identities=20% Similarity=0.250 Sum_probs=147.2
Q ss_pred hcCCC-CCCccc-c--CHHHHHHHHHHHHcC--CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCC--
Q 020071 18 KYRPT-KVCDIV-G--NLDAVARLGIIARDG--NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRG-- 89 (331)
Q Consensus 18 ~~~p~-~~~~~i-g--~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~-- 89 (331)
...|. +|+.++ | +..+......+.+.. ..+.++||||.|.|||++++++++.....+....++.+.......
T Consensus 79 ~l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~ 158 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDF 158 (408)
T ss_pred cCCCCCchhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHH
Confidence 34444 677765 3 444455555555543 233489999999999999999999987776666666665443210
Q ss_pred hHhHHH-HHHHHHhcccCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHHHhcCC-cEEEEeeCCC----CCCChhhhcc
Q 020071 90 IDVVRN-KIKMFAQKKVTLPPGKHKVVVLDEADSMTA--GAQQALRRTMEIYSNS-TRFALACNVS----SKIIEPIQSR 161 (331)
Q Consensus 90 ~~~i~~-~i~~~~~~~~~~~~~~~~vviide~d~l~~--~~~~~Ll~~le~~~~~-~~~I~~~~~~----~~l~~~l~sr 161 (331)
+..+++ ....+... . ...+++|||++.+.. ..++.|..++.....+ -.+|+++..+ ..+.+.++||
T Consensus 159 v~a~~~~~~~~Fk~~-----y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR 232 (408)
T COG0593 159 VKALRDNEMEKFKEK-----Y-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSR 232 (408)
T ss_pred HHHHHhhhHHHHHHh-----h-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHH
Confidence 001111 11111110 2 356999999999864 4588888887754433 3677777553 2456899999
Q ss_pred ---cceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh----hCCCccchhhhhhhc
Q 020071 162 ---CAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY----SGFRFVNQENVFKVC 232 (331)
Q Consensus 162 ---~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~----~~~~~i~~~~v~~~~ 232 (331)
+.++.+.||+.+....+|++.+...++.++++++.+++.....|+|.+...++.+. .....||.+.+.+++
T Consensus 233 ~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L 310 (408)
T COG0593 233 LEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEIL 310 (408)
T ss_pred HhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999887653 344478877776654
No 137
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.64 E-value=5.8e-15 Score=136.29 Aligned_cols=175 Identities=19% Similarity=0.214 Sum_probs=119.0
Q ss_pred hhhhcCCCCCCccccCHHHHHHHHHHHHc-----------C-CCC-eEEEeCCCCccHHHHHHHHHHHhcCCC-----CC
Q 020071 15 WVEKYRPTKVCDIVGNLDAVARLGIIARD-----------G-NMP-NLILAGPPGTGKTTSILALAHELLGPN-----YR 76 (331)
Q Consensus 15 ~~~~~~p~~~~~~ig~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~ 76 (331)
..+.+.+.+|+++.|.+..++.++..+.. | ..| ++|||||||+|||++++++++.+.... ..
T Consensus 172 ~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~ 251 (512)
T TIGR03689 172 VLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDK 251 (512)
T ss_pred eeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCc
Confidence 34566677999999999999988887642 2 223 399999999999999999999984331 12
Q ss_pred CceEEeecCCCC------ChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHH------------HHHHHHHHHHHh
Q 020071 77 EAVMELNASDDR------GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG------------AQQALRRTMEIY 138 (331)
Q Consensus 77 ~~~~~~~~~~~~------~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~------------~~~~Ll~~le~~ 138 (331)
..++.+..++.. ....++..+..+..... .+.+.++||||+|.+... ..+.|+..|+..
T Consensus 252 ~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~---~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 252 SYFLNIKGPELLNKYVGETERQIRLIFQRAREKAS---DGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred eeEEeccchhhcccccchHHHHHHHHHHHHHHHhh---cCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc
Confidence 223333333221 11233444443333221 345779999999987321 135667777643
Q ss_pred c--CCcEEEEeeCCCCCCChhhhc--ccc-eeeecCCCHHHHHHHHHHHHHhcCCCCCHH
Q 020071 139 S--NSTRFALACNVSSKIIEPIQS--RCA-IVRFSRLSDEEILSRLMVVVQEEKVPYVPE 193 (331)
Q Consensus 139 ~--~~~~~I~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~ 193 (331)
. .++.+|.+||.+..+.+++++ |+. .+.|++|+.++..++++.++.. .+.++++
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~~~ 387 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLDAD 387 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCchHH
Confidence 3 467888899999999999987 764 4899999999999999987653 3445433
No 138
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.64 E-value=7.8e-15 Score=144.02 Aligned_cols=170 Identities=19% Similarity=0.237 Sum_probs=124.2
Q ss_pred CCCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC
Q 020071 21 PTKVCDIVGNLDAVARLGIIARD-----------G-NMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD 87 (331)
Q Consensus 21 p~~~~~~ig~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (331)
...|+++.|.+.+++.|...+.. | ..|. +|||||||+|||++|+++++.+ +.+++.+.+++.
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~-----~~~fi~v~~~~l 523 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES-----GANFIAVRGPEI 523 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc-----CCCEEEEehHHH
Confidence 44799999999999998887652 2 2333 8999999999999999999998 677888876543
Q ss_pred C------ChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH------------HHHHHHHHHHHH--hcCCcEEEEe
Q 020071 88 R------GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA------------GAQQALRRTMEI--YSNSTRFALA 147 (331)
Q Consensus 88 ~------~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~------------~~~~~Ll~~le~--~~~~~~~I~~ 147 (331)
. +...+++.+..+.. ..+.++||||+|.+.. ...+.|+..|+. ...++.+|.+
T Consensus 524 ~~~~vGese~~i~~~f~~A~~-------~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~a 596 (733)
T TIGR01243 524 LSKWVGESEKAIREIFRKARQ-------AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAA 596 (733)
T ss_pred hhcccCcHHHHHHHHHHHHHh-------cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEe
Confidence 1 12234444443332 3468999999998732 234667777763 4467888899
Q ss_pred eCCCCCCChhhhc--ccc-eeeecCCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHhcCC
Q 020071 148 CNVSSKIIEPIQS--RCA-IVRFSRLSDEEILSRLMVVVQEEKVPYVP-EGLEAIIFTADG 204 (331)
Q Consensus 148 ~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~-~~~~~l~~~~~g 204 (331)
||.+..+.+++.+ ||. .+.+++|+.++..++++...++. .+++ ..++.+++.+.|
T Consensus 597 Tn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~--~~~~~~~l~~la~~t~g 655 (733)
T TIGR01243 597 TNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM--PLAEDVDLEELAEMTEG 655 (733)
T ss_pred CCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC--CCCccCCHHHHHHHcCC
Confidence 9999999999986 874 57999999999999987665433 3333 347888888766
No 139
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.64 E-value=7.7e-15 Score=145.13 Aligned_cols=199 Identities=17% Similarity=0.197 Sum_probs=147.8
Q ss_pred CCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCC-----CCCceEEeecCC
Q 020071 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN-----YREAVMELNASD 86 (331)
Q Consensus 12 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~ 86 (331)
..|++++.||..+++++|+++.+.++...+.....++++|+||||+|||++++.+++.+.... .+..++.++...
T Consensus 165 ~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~ 244 (857)
T PRK10865 165 TIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 244 (857)
T ss_pred hhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh
Confidence 458899999999999999999999999999888877899999999999999999999875321 133455554433
Q ss_pred CC----ChH----hHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH--------HHHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 87 DR----GID----VVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA--------GAQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 87 ~~----~~~----~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~--------~~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
.. ... .++..+..... ..++.|+||||+|.+.. +.++.|...++. ....+|.+|+.
T Consensus 245 l~ag~~~~g~~e~~lk~~~~~~~~------~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~IgaTt~ 316 (857)
T PRK10865 245 LVAGAKYRGEFEERLKGVLNDLAK------QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTL 316 (857)
T ss_pred hhhccchhhhhHHHHHHHHHHHHH------cCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeEEEcCCC
Confidence 21 112 23334433322 23467999999999853 357788888764 56788888776
Q ss_pred CC-----CCChhhhcccceeeecCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhcC------CCHHHHHHHHHH
Q 020071 151 SS-----KIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE----EKVPYVPEGLEAIIFTAD------GDMRQALNNLQA 215 (331)
Q Consensus 151 ~~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~~~------g~~r~~~~~l~~ 215 (331)
.+ ...+++.+||+.+.+..|+.++...+++....+ .++.++++++...+..++ --+.+|+..++.
T Consensus 317 ~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~ 396 (857)
T PRK10865 317 DEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDE 396 (857)
T ss_pred HHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHH
Confidence 53 478999999999999999999999988776543 357788888877766653 357778888876
Q ss_pred Hhh
Q 020071 216 TYS 218 (331)
Q Consensus 216 ~~~ 218 (331)
++.
T Consensus 397 aaa 399 (857)
T PRK10865 397 AAS 399 (857)
T ss_pred Hhc
Confidence 653
No 140
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.62 E-value=1.6e-14 Score=139.96 Aligned_cols=199 Identities=14% Similarity=0.148 Sum_probs=138.7
Q ss_pred chhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCC-----CCceEEeecCCC-
Q 020071 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY-----REAVMELNASDD- 87 (331)
Q Consensus 14 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-----~~~~~~~~~~~~- 87 (331)
.+++.-+-..++.++|++..+..+...+.....++++|+||||+|||++|+.+++.+..... +..++.++....
T Consensus 175 ~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~ll 254 (758)
T PRK11034 175 NLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL 254 (758)
T ss_pred hHHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHh
Confidence 34455567788999999999999999998877777999999999999999999987643221 112233322111
Q ss_pred ---CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC---------HHHHHHHHHHHHHhcCCcEEEEeeCCCC---
Q 020071 88 ---RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT---------AGAQQALRRTMEIYSNSTRFALACNVSS--- 152 (331)
Q Consensus 88 ---~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~---------~~~~~~Ll~~le~~~~~~~~I~~~~~~~--- 152 (331)
....++.+.++....... ..+..++||||+|.+. .+..+.|..++.. ...++|.+|+..+
T Consensus 255 aG~~~~Ge~e~rl~~l~~~l~---~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 255 AGTKYRGDFEKRFKALLKQLE---QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFSN 329 (758)
T ss_pred cccchhhhHHHHHHHHHHHHH---hcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecCChHHHHH
Confidence 011223333322222111 1235699999999872 2334456666653 4577777777542
Q ss_pred --CCChhhhcccceeeecCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHhcC------CCHHHHHHHHHHHh
Q 020071 153 --KIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ----EEKVPYVPEGLEAIIFTAD------GDMRQALNNLQATY 217 (331)
Q Consensus 153 --~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~----~~~~~i~~~~~~~l~~~~~------g~~r~~~~~l~~~~ 217 (331)
...+++.+||+.+.+++|+.++...+|+.... .+++.++++++..++.++. .-|.+++.+++.++
T Consensus 330 ~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~ 406 (758)
T PRK11034 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAG 406 (758)
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHH
Confidence 46899999999999999999999999987654 3578899999988887653 35789999998765
No 141
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.62 E-value=1.7e-14 Score=139.87 Aligned_cols=179 Identities=17% Similarity=0.212 Sum_probs=126.6
Q ss_pred ccccCHHHHHHHHHHHHcC--------CC-CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHH
Q 020071 26 DIVGNLDAVARLGIIARDG--------NM-PNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNK 96 (331)
Q Consensus 26 ~~ig~~~~~~~l~~~l~~~--------~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 96 (331)
.++||++++..+...+... ++ .+++|+||+|+|||.+|+.+++.+ +.+++.+++++......+...
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l-----~~~~i~id~se~~~~~~~~~L 533 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL-----GIELLRFDMSEYMERHTVSRL 533 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCCcEEeechhhcccccHHHH
Confidence 4899999999998888731 22 248999999999999999999998 456777776554221111111
Q ss_pred ---------------HHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCcEEEEeeCC
Q 020071 97 ---------------IKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS-----------NSTRFALACNV 150 (331)
Q Consensus 97 ---------------i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~~~ 150 (331)
+..... ..++.|+++||+|+++++.++.|+++|++.. .++.||+++|.
T Consensus 534 iG~~~gyvg~~~~g~L~~~v~------~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~ 607 (758)
T PRK11034 534 IGAPPGYVGFDQGGLLTDAVI------KHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_pred cCCCCCcccccccchHHHHHH------hCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCc
Confidence 111111 2346899999999999999999999998531 36678998872
Q ss_pred C-------------------------CCCChhhhcccc-eeeecCCCHHHHHHHHHHHHH-------hcC--CCCCHHHH
Q 020071 151 S-------------------------SKIIEPIQSRCA-IVRFSRLSDEEILSRLMVVVQ-------EEK--VPYVPEGL 195 (331)
Q Consensus 151 ~-------------------------~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~-------~~~--~~i~~~~~ 195 (331)
- ..+.|.+..|+. ++.|.|++.+++.+++...+. ..| +.++++++
T Consensus 608 g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~ 687 (758)
T PRK11034 608 GVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEAR 687 (758)
T ss_pred CHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHH
Confidence 1 125588889985 789999999999888765543 334 45689999
Q ss_pred HHHHHhcC---CCHHHHHHHHHH
Q 020071 196 EAIIFTAD---GDMRQALNNLQA 215 (331)
Q Consensus 196 ~~l~~~~~---g~~r~~~~~l~~ 215 (331)
++|++..- ...|.+.+.++.
T Consensus 688 ~~l~~~~~~~~~GAR~l~r~i~~ 710 (758)
T PRK11034 688 DWLAEKGYDRAMGARPMARVIQD 710 (758)
T ss_pred HHHHHhCCCCCCCCchHHHHHHH
Confidence 99997642 234555555543
No 142
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.62 E-value=3e-14 Score=135.35 Aligned_cols=209 Identities=18% Similarity=0.190 Sum_probs=146.0
Q ss_pred hcCCCCCCccccCHHHHHHHHHHHHcC--CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHH
Q 020071 18 KYRPTKVCDIVGNLDAVARLGIIARDG--NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRN 95 (331)
Q Consensus 18 ~~~p~~~~~~ig~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 95 (331)
+.+...|++++|++..++.+.+.++.- ...+|+|+|++||||+++|+.++..... ...+|+.+||.... .+.+..
T Consensus 189 ~~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r--~~~pfv~i~c~~~~-~~~~~~ 265 (534)
T TIGR01817 189 RRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR--AKRPFVKVNCAALS-ETLLES 265 (534)
T ss_pred ccccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC--CCCCeEEeecCCCC-HHHHHH
Confidence 455668999999999999888777653 2224999999999999999999987543 25689999998652 222222
Q ss_pred HHHHHHhc---------ccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCcEEEEeeCCC----
Q 020071 96 KIKMFAQK---------KVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS-----------NSTRFALACNVS---- 151 (331)
Q Consensus 96 ~i~~~~~~---------~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~~~~---- 151 (331)
.+-..... ...+....+++++|||++.|+...|..|++++++.. .++++|++++..
T Consensus 266 ~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~ 345 (534)
T TIGR01817 266 ELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEA 345 (534)
T ss_pred HHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHH
Confidence 22100000 000113457899999999999999999999998632 247888887653
Q ss_pred ---CCCChhhhcccc--eeeecCCCH--HHHHHHHHHHHH----hcC--CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHh
Q 020071 152 ---SKIIEPIQSRCA--IVRFSRLSD--EEILSRLMVVVQ----EEK--VPYVPEGLEAIIFTA-DGDMRQALNNLQATY 217 (331)
Q Consensus 152 ---~~l~~~l~sr~~--~i~~~~~~~--~~~~~~l~~~~~----~~~--~~i~~~~~~~l~~~~-~g~~r~~~~~l~~~~ 217 (331)
..+.+.+..|+. .+.++|+.+ +++..++...+. +.+ ..+++++++.|..+. .||+|++.+.++.++
T Consensus 346 ~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~ 425 (534)
T TIGR01817 346 VAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTA 425 (534)
T ss_pred HHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 245566666754 467888873 555544444332 222 578999999999986 899999999998775
Q ss_pred --hCCCccchhhhh
Q 020071 218 --SGFRFVNQENVF 229 (331)
Q Consensus 218 --~~~~~i~~~~v~ 229 (331)
.....|+.+++.
T Consensus 426 ~~~~~~~I~~~~l~ 439 (534)
T TIGR01817 426 TLSRSGTITRSDFS 439 (534)
T ss_pred HhCCCCcccHHHCc
Confidence 344567777764
No 143
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.62 E-value=1.2e-14 Score=143.91 Aligned_cols=199 Identities=18% Similarity=0.187 Sum_probs=147.0
Q ss_pred chhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCC-----CCCceEEeecCCC-
Q 020071 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN-----YREAVMELNASDD- 87 (331)
Q Consensus 14 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~- 87 (331)
.++++-+...+++++|++..+..+...+.....+|++|+||||+|||++|+.+++.+.... .+..++.++....
T Consensus 168 ~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ 247 (821)
T CHL00095 168 NLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLL 247 (821)
T ss_pred HHHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHh
Confidence 4555667888999999999999999999988888899999999999999999999875321 1345666664322
Q ss_pred ---CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH--------HHHHHHHHHHHHhcCCcEEEEeeCCC-----
Q 020071 88 ---RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA--------GAQQALRRTMEIYSNSTRFALACNVS----- 151 (331)
Q Consensus 88 ---~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~--------~~~~~Ll~~le~~~~~~~~I~~~~~~----- 151 (331)
....++.+.++....... ..+..|+||||+|.+.. +..+.|...+.. ...++|.+|+..
T Consensus 248 ag~~~~ge~e~rl~~i~~~~~---~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 248 AGTKYRGEFEERLKRIFDEIQ---ENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTLDEYRKH 322 (821)
T ss_pred ccCCCccHHHHHHHHHHHHHH---hcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCHHHHHHH
Confidence 112234444444333221 23467999999987743 346677777764 567788887764
Q ss_pred CCCChhhhcccceeeecCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHhcCC------CHHHHHHHHHHHh
Q 020071 152 SKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ----EEKVPYVPEGLEAIIFTADG------DMRQALNNLQATY 217 (331)
Q Consensus 152 ~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~----~~~~~i~~~~~~~l~~~~~g------~~r~~~~~l~~~~ 217 (331)
....+.+.+|++.+.+.+++.++...+++.... ..++.++++++..++.++++ -|++++..++.++
T Consensus 323 ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~ 398 (821)
T CHL00095 323 IEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAG 398 (821)
T ss_pred HhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHH
Confidence 246789999999999999999998888776543 34677899999999988864 3889999998764
No 144
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.61 E-value=2.3e-14 Score=141.36 Aligned_cols=184 Identities=21% Similarity=0.300 Sum_probs=134.8
Q ss_pred CccccCHHHHHHHHHHHHc---C----CCC--eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHH-
Q 020071 25 CDIVGNLDAVARLGIIARD---G----NMP--NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVR- 94 (331)
Q Consensus 25 ~~~ig~~~~~~~l~~~l~~---~----~~~--~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~- 94 (331)
..++||+.++..+.+.+.. | ..| .++|+||+|+|||.+|+++++.+... ...++.++++.......+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~~~~~~ 643 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEAHTVSR 643 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhhhhhcc
Confidence 3689999999988888753 1 223 27999999999999999999998643 2355666644321100000
Q ss_pred --------------HHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCcEEEEeeC
Q 020071 95 --------------NKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS-----------NSTRFALACN 149 (331)
Q Consensus 95 --------------~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~~ 149 (331)
..+..... ..++.||++||+++++++.++.|+.++++.. .++.||+|+|
T Consensus 644 l~g~~~gyvg~~~~g~L~~~v~------~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSN 717 (852)
T TIGR03345 644 LKGSPPGYVGYGEGGVLTEAVR------RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSN 717 (852)
T ss_pred ccCCCCCcccccccchHHHHHH------hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCC
Confidence 01111111 2346799999999999999999999999654 6788999887
Q ss_pred CC-----------C------------------CCChhhhcccceeeecCCCHHHHHHHHHHHHHh-------c-C--CCC
Q 020071 150 VS-----------S------------------KIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE-------E-K--VPY 190 (331)
Q Consensus 150 ~~-----------~------------------~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~-------~-~--~~i 190 (331)
-. . .+.|.+.+|+.++.|.|++.+++.+++...+.. . + +.+
T Consensus 718 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i 797 (852)
T TIGR03345 718 AGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVY 797 (852)
T ss_pred CchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEE
Confidence 41 0 256888899999999999999999998765542 1 4 467
Q ss_pred CHHHHHHHHHhcCC---CHHHHHHHHHHH
Q 020071 191 VPEGLEAIIFTADG---DMRQALNNLQAT 216 (331)
Q Consensus 191 ~~~~~~~l~~~~~g---~~r~~~~~l~~~ 216 (331)
++++.++|++.+.+ ..|.+.+.++..
T Consensus 798 ~d~a~~~La~~g~~~~~GAR~L~r~Ie~~ 826 (852)
T TIGR03345 798 SEALVEHIVARCTEVESGARNIDAILNQT 826 (852)
T ss_pred CHHHHHHHHHHcCCCCCChHHHHHHHHHH
Confidence 99999999999876 789988888763
No 145
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.60 E-value=5.3e-14 Score=124.88 Aligned_cols=188 Identities=16% Similarity=0.200 Sum_probs=131.0
Q ss_pred cccCHHHHHHHHHHHHcC--CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcc
Q 020071 27 IVGNLDAVARLGIIARDG--NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKK 104 (331)
Q Consensus 27 ~ig~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~ 104 (331)
++|++..++.+.+.+..- ...+|+|+|++||||+++|++++..... ...+|+.+||.... .+.+...+-......
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r--~~~pfv~vnc~~~~-~~~l~~~lfG~~~g~ 77 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKR--WQGPLVKLNCAALS-ENLLDSELFGHEAGA 77 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCc--cCCCeEEEeCCCCC-hHHHHHHHhcccccc
Confidence 467777777766666542 1223999999999999999999986532 25689999998652 222222221101000
Q ss_pred c---------CCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCcEEEEeeCCC-------CCCChh
Q 020071 105 V---------TLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS-----------NSTRFALACNVS-------SKIIEP 157 (331)
Q Consensus 105 ~---------~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~~~~-------~~l~~~ 157 (331)
+ .+.....++++|||++.|+.+.|..|++++++.. .++++|++++.. ..+.+.
T Consensus 78 ~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~d 157 (329)
T TIGR02974 78 FTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRAD 157 (329)
T ss_pred ccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHH
Confidence 0 0123467899999999999999999999998532 457888888653 345567
Q ss_pred hhccc--ceeeecCCCH--HHHHHHHHHH----HHhcC----CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHh
Q 020071 158 IQSRC--AIVRFSRLSD--EEILSRLMVV----VQEEK----VPYVPEGLEAIIFTA-DGDMRQALNNLQATY 217 (331)
Q Consensus 158 l~sr~--~~i~~~~~~~--~~~~~~l~~~----~~~~~----~~i~~~~~~~l~~~~-~g~~r~~~~~l~~~~ 217 (331)
+..|+ ..+.++|+.+ +++..++... +.+.+ ..+++++++.|..+. .||+|++.+.++.++
T Consensus 158 L~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~ 230 (329)
T TIGR02974 158 LLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSV 230 (329)
T ss_pred HHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 77776 4578888884 5665554443 33333 368999999999988 899999999998775
No 146
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.60 E-value=4.1e-14 Score=140.16 Aligned_cols=182 Identities=19% Similarity=0.250 Sum_probs=128.3
Q ss_pred CccccCHHHHHHHHHHHHcC-------CCC--eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChH----
Q 020071 25 CDIVGNLDAVARLGIIARDG-------NMP--NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGID---- 91 (331)
Q Consensus 25 ~~~ig~~~~~~~l~~~l~~~-------~~~--~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~---- 91 (331)
+.++||++++..+...+... ..| +++|+||+|+|||++|+.+++.+.|.. .+++.++.+......
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~--~~~~~~d~s~~~~~~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSE--DAMIRLDMSEYMEKHTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCc--cceEEEEchhccccccHHH
Confidence 46899999999998887632 223 279999999999999999999998753 456666654431111
Q ss_pred ------------hHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh-----------cCCcEEEEee
Q 020071 92 ------------VVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY-----------SNSTRFALAC 148 (331)
Q Consensus 92 ------------~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~ 148 (331)
.......... ..++.||++||+|+++++.++.|++++++. -.++.||+|+
T Consensus 587 l~g~~~gyvg~~~~~~l~~~~~-------~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Ts 659 (821)
T CHL00095 587 LIGSPPGYVGYNEGGQLTEAVR-------KKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTS 659 (821)
T ss_pred hcCCCCcccCcCccchHHHHHH-------hCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeC
Confidence 1111111111 234689999999999999999999999974 2578889987
Q ss_pred CCCCC-------------------------------------CChhhhccc-ceeeecCCCHHHHHHHHHHHHHh-----
Q 020071 149 NVSSK-------------------------------------IIEPIQSRC-AIVRFSRLSDEEILSRLMVVVQE----- 185 (331)
Q Consensus 149 ~~~~~-------------------------------------l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~----- 185 (331)
|.... +.|.+.+|+ .++.|.|++.+++.+++...+++
T Consensus 660 n~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl 739 (821)
T CHL00095 660 NLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRL 739 (821)
T ss_pred CcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 74210 235678888 78899999999999998766542
Q ss_pred --cC--CCCCHHHHHHHHHhcC---CCHHHHHHHHHH
Q 020071 186 --EK--VPYVPEGLEAIIFTAD---GDMRQALNNLQA 215 (331)
Q Consensus 186 --~~--~~i~~~~~~~l~~~~~---g~~r~~~~~l~~ 215 (331)
.+ +.+++++.++|++..- .-.|.+.+.++.
T Consensus 740 ~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~ 776 (821)
T CHL00095 740 NEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMR 776 (821)
T ss_pred HHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHH
Confidence 22 4678999999998641 234555555543
No 147
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.60 E-value=5.8e-14 Score=122.38 Aligned_cols=151 Identities=14% Similarity=0.164 Sum_probs=112.1
Q ss_pred CCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC------ChHhHHHHHHHHHhcccCCCCCCceEEEE
Q 020071 45 NMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR------GIDVVRNKIKMFAQKKVTLPPGKHKVVVL 117 (331)
Q Consensus 45 ~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~------~~~~i~~~i~~~~~~~~~~~~~~~~vvii 117 (331)
+.|. ++||||||+|||.+|+++++++ +.+++.+++++.. +...+++....+....- ..+...+|||
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el-----g~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~--~~~aPcVLFI 218 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM-----GIEPIVMSAGELESENAGEPGKLIRQRYREAADIIK--KKGKMSCLFI 218 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc-----CCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhh--ccCCCeEEEE
Confidence 4444 7999999999999999999999 7778888876542 23466776666554320 0345789999
Q ss_pred eCCCCCCHH-----------H-HHHHHHHHHHh--------------cCCcEEEEeeCCCCCCChhhhc--ccceeeecC
Q 020071 118 DEADSMTAG-----------A-QQALRRTMEIY--------------SNSTRFALACNVSSKIIEPIQS--RCAIVRFSR 169 (331)
Q Consensus 118 de~d~l~~~-----------~-~~~Ll~~le~~--------------~~~~~~I~~~~~~~~l~~~l~s--r~~~i~~~~ 169 (331)
||+|.+... . ...|+..++.| ...+.+|.++|+++.|.+++++ |+..+ +..
T Consensus 219 DEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~-i~l 297 (413)
T PLN00020 219 NDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKF-YWA 297 (413)
T ss_pred ehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCce-eCC
Confidence 999976321 1 24566766643 3567889999999999999998 77654 457
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCC
Q 020071 170 LSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGD 205 (331)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~ 205 (331)
|+.++..++++.++++.+ ++...+..|+....|-
T Consensus 298 Pd~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 298 PTREDRIGVVHGIFRDDG--VSREDVVKLVDTFPGQ 331 (413)
T ss_pred CCHHHHHHHHHHHhccCC--CCHHHHHHHHHcCCCC
Confidence 999999999998887765 5678888888887664
No 148
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.60 E-value=5.1e-14 Score=124.16 Aligned_cols=213 Identities=17% Similarity=0.148 Sum_probs=131.0
Q ss_pred CCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCC-----------------------
Q 020071 20 RPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYR----------------------- 76 (331)
Q Consensus 20 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~----------------------- 76 (331)
.|..|.+++||++++..+.-.+-.....|+||+|++|+|||++|+.+++.+.+....
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 82 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTT 82 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCc
Confidence 478899999999999987765543334579999999999999999999998541100
Q ss_pred -----CceEEeecC--C--CCChHhHHHHHHHH--HhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc------
Q 020071 77 -----EAVMELNAS--D--DRGIDVVRNKIKMF--AQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS------ 139 (331)
Q Consensus 77 -----~~~~~~~~~--~--~~~~~~i~~~i~~~--~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~------ 139 (331)
.+++.+... . ..|.-.+...+..- ...+-.+....+.++++||++.++.+.++.|+..|++..
T Consensus 83 ~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~ 162 (334)
T PRK13407 83 MIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVERE 162 (334)
T ss_pred ccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEEC
Confidence 001111000 0 01111122221100 000000112456799999999999999999999998532
Q ss_pred -------CCcEEEEeeCCC-CCCChhhhcccc-eeeecCCCH-HHHHHHHHHHHH-------------------------
Q 020071 140 -------NSTRFALACNVS-SKIIEPIQSRCA-IVRFSRLSD-EEILSRLMVVVQ------------------------- 184 (331)
Q Consensus 140 -------~~~~~I~~~~~~-~~l~~~l~sr~~-~i~~~~~~~-~~~~~~l~~~~~------------------------- 184 (331)
..+.+|.++|.. ..+.+.+..|+. .+.+.+++. ++..+++.....
T Consensus 163 G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 242 (334)
T PRK13407 163 GLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILG 242 (334)
T ss_pred CeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHH
Confidence 334444445543 368889999975 356666655 554445443211
Q ss_pred ----hcCCCCCHHHHHHHHHhc---C-CCHHHHHHHHHHH-----hhCCCccchhhhhhhc
Q 020071 185 ----EEKVPYVPEGLEAIIFTA---D-GDMRQALNNLQAT-----YSGFRFVNQENVFKVC 232 (331)
Q Consensus 185 ----~~~~~i~~~~~~~l~~~~---~-g~~r~~~~~l~~~-----~~~~~~i~~~~v~~~~ 232 (331)
-..+.++++.++++++.+ + ..+|..+..+..+ ..+...|+.+++..+.
T Consensus 243 a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~ 303 (334)
T PRK13407 243 ARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVA 303 (334)
T ss_pred HHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHH
Confidence 124667888888877654 2 3566666655433 2677789999887643
No 149
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.59 E-value=4.7e-13 Score=121.22 Aligned_cols=205 Identities=20% Similarity=0.233 Sum_probs=146.5
Q ss_pred CCCCccccCHHHHHHHHHHHHcCCC--CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHH
Q 020071 22 TKVCDIVGNLDAVARLGIIARDGNM--PNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKM 99 (331)
Q Consensus 22 ~~~~~~ig~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 99 (331)
..+.+++|++..++.+.+.+.+-.. .+|||+|++||||..+|+++++.-... +.+|+.+||... ..+.+...+-.
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~--~~PFVavNcaAi-p~~l~ESELFG 214 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRA--KGPFIAVNCAAI-PENLLESELFG 214 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCccc--CCCceeeecccC-CHHHHHHHhhc
Confidence 3677899999999999888876422 239999999999999999999976433 568999999875 33444443332
Q ss_pred HHhcccC---------CCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh-----------cCCcEEEEeeCCC-------C
Q 020071 100 FAQKKVT---------LPPGKHKVVVLDEADSMTAGAQQALRRTMEIY-----------SNSTRFALACNVS-------S 152 (331)
Q Consensus 100 ~~~~~~~---------~~~~~~~vviide~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~~~~-------~ 152 (331)
.....|+ +..++++++|+||+..|+.+.|..|++++++. +.++++|.+|+.. .
T Consensus 215 hekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G 294 (464)
T COG2204 215 HEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAG 294 (464)
T ss_pred ccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcC
Confidence 2222221 11356889999999999999999999999852 2477899888763 3
Q ss_pred CCChhhhccccee--eecCCCH--HHH----HHHHHHHHHhcC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHh--h
Q 020071 153 KIIEPIQSRCAIV--RFSRLSD--EEI----LSRLMVVVQEEK---VPYVPEGLEAIIFTA-DGDMRQALNNLQATY--S 218 (331)
Q Consensus 153 ~l~~~l~sr~~~i--~~~~~~~--~~~----~~~l~~~~~~~~---~~i~~~~~~~l~~~~-~g~~r~~~~~l~~~~--~ 218 (331)
++-+.|--|..++ +++|+.+ +++ ..++++.+++.| ..+++++++.|..+. .||+|++.|.++.++ .
T Consensus 295 ~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~ 374 (464)
T COG2204 295 RFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILS 374 (464)
T ss_pred CcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcC
Confidence 5556666776654 5556654 333 344455555444 468999999988876 799999999999875 3
Q ss_pred CCCccchhhhh
Q 020071 219 GFRFVNQENVF 229 (331)
Q Consensus 219 ~~~~i~~~~v~ 229 (331)
....|+.+++-
T Consensus 375 ~~~~i~~~~l~ 385 (464)
T COG2204 375 EGPEIEVEDLP 385 (464)
T ss_pred Cccccchhhcc
Confidence 44456665543
No 150
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.58 E-value=1.1e-13 Score=135.67 Aligned_cols=179 Identities=20% Similarity=0.247 Sum_probs=126.8
Q ss_pred CccccCHHHHHHHHHHHHcC--------CCC-eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC-------
Q 020071 25 CDIVGNLDAVARLGIIARDG--------NMP-NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR------- 88 (331)
Q Consensus 25 ~~~ig~~~~~~~l~~~l~~~--------~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~------- 88 (331)
..++||+++++.+.+.+... ++. +++|+||+|+|||.+|+.+++.+ ..+++.++++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~~~~~ 528 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKHTVSR 528 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhcccHHH
Confidence 35899999999988887642 222 37999999999999999999998 3445666554321
Q ss_pred ---------ChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh-----------cCCcEEEEee
Q 020071 89 ---------GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY-----------SNSTRFALAC 148 (331)
Q Consensus 89 ---------~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~ 148 (331)
+.+......+... ..++.||++||+|+++++.++.|++++++. -.++.||+++
T Consensus 529 lig~~~gyvg~~~~~~l~~~~~-------~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Ts 601 (731)
T TIGR02639 529 LIGAPPGYVGFEQGGLLTEAVR-------KHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTS 601 (731)
T ss_pred HhcCCCCCcccchhhHHHHHHH-------hCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECC
Confidence 1111111111111 234689999999999999999999999863 1356788887
Q ss_pred CCCC-------------------------CCChhhhccc-ceeeecCCCHHHHHHHHHHHHHh-------c--CCCCCHH
Q 020071 149 NVSS-------------------------KIIEPIQSRC-AIVRFSRLSDEEILSRLMVVVQE-------E--KVPYVPE 193 (331)
Q Consensus 149 ~~~~-------------------------~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~-------~--~~~i~~~ 193 (331)
|... .+.|.+.+|+ .++.|.|++.+++.+++...+++ . .+.++++
T Consensus 602 n~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~ 681 (731)
T TIGR02639 602 NAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDD 681 (731)
T ss_pred CcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHH
Confidence 6521 2467788888 47899999999999998877652 2 2567899
Q ss_pred HHHHHHHhc---CCCHHHHHHHHHH
Q 020071 194 GLEAIIFTA---DGDMRQALNNLQA 215 (331)
Q Consensus 194 ~~~~l~~~~---~g~~r~~~~~l~~ 215 (331)
+.++|++.. ....|.+.+.++.
T Consensus 682 a~~~La~~~~~~~~GaR~l~r~i~~ 706 (731)
T TIGR02639 682 AKKYLAEKGYDEEFGARPLARVIQE 706 (731)
T ss_pred HHHHHHHhCCCcccCchHHHHHHHH
Confidence 999999864 2345555555554
No 151
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=5.9e-14 Score=125.87 Aligned_cols=195 Identities=21% Similarity=0.228 Sum_probs=134.3
Q ss_pred CCCCCCccccCHHHHHHHHHHHH-----------cCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC
Q 020071 20 RPTKVCDIVGNLDAVARLGIIAR-----------DGNMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD 87 (331)
Q Consensus 20 ~p~~~~~~ig~~~~~~~l~~~l~-----------~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (331)
.-.+|+|+-|-++++++|...++ .|++|. +||+||||+|||.+|++++-+. +.+|+...+++.
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA-----~VPFF~~sGSEF 373 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA-----GVPFFYASGSEF 373 (752)
T ss_pred cccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc-----CCCeEeccccch
Confidence 34579999999999998877764 367777 9999999999999999999988 778887776654
Q ss_pred ------CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHHH--hcCCcEEEEee
Q 020071 88 ------RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA-----------GAQQALRRTMEI--YSNSTRFALAC 148 (331)
Q Consensus 88 ------~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~-----------~~~~~Ll~~le~--~~~~~~~I~~~ 148 (331)
.|...+++++..+.... +.||||||+|.... ...|.|+-=|+. ....+++|.+|
T Consensus 374 dEm~VGvGArRVRdLF~aAk~~A-------PcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigAT 446 (752)
T KOG0734|consen 374 DEMFVGVGARRVRDLFAAAKARA-------PCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGAT 446 (752)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC-------CeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEecc
Confidence 23456777776655433 67999999998742 234455555553 34567788888
Q ss_pred CCCCCCChhhhc--cc-ceeeecCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHhcC----CCHHHHHHHHH--HHh
Q 020071 149 NVSSKIIEPIQS--RC-AIVRFSRLSDEEILSRLMVVVQEEK--VPYVPEGLEAIIFTAD----GDMRQALNNLQ--ATY 217 (331)
Q Consensus 149 ~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~--~~i~~~~~~~l~~~~~----g~~r~~~~~l~--~~~ 217 (331)
|-++.+.+++.+ |+ ..+..+.|+-.-..++|.....+-- -.+|+ ..|++=+. -|+..++|... .+.
T Consensus 447 Nfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~---~iiARGT~GFsGAdLaNlVNqAAlkAa~ 523 (752)
T KOG0734|consen 447 NFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDP---KIIARGTPGFSGADLANLVNQAALKAAV 523 (752)
T ss_pred CChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCH---hHhccCCCCCchHHHHHHHHHHHHHHHh
Confidence 999999999977 45 3468888888778888877765422 12333 44555443 35555555542 222
Q ss_pred hCCCccchhhhh
Q 020071 218 SGFRFVNQENVF 229 (331)
Q Consensus 218 ~~~~~i~~~~v~ 229 (331)
.+...++..+++
T Consensus 524 dga~~VtM~~LE 535 (752)
T KOG0734|consen 524 DGAEMVTMKHLE 535 (752)
T ss_pred cCcccccHHHHh
Confidence 455556666554
No 152
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.58 E-value=1.7e-13 Score=135.75 Aligned_cols=185 Identities=19% Similarity=0.253 Sum_probs=130.3
Q ss_pred CCCccccCHHHHHHHHHHHHcC-------CCC--eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhH
Q 020071 23 KVCDIVGNLDAVARLGIIARDG-------NMP--NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVV 93 (331)
Q Consensus 23 ~~~~~ig~~~~~~~l~~~l~~~-------~~~--~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i 93 (331)
.+..++||+.++..+...+... ..| +++|+||+|+|||++|+.+++.+.+. ..+++.++++........
T Consensus 566 l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~~~~~ 643 (857)
T PRK10865 566 LHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSEFMEKHSV 643 (857)
T ss_pred hCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhhhhhH
Confidence 3557999999999888887642 112 38999999999999999999988654 335677776543211111
Q ss_pred HHH---------------HHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCcEEEEe
Q 020071 94 RNK---------------IKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS-----------NSTRFALA 147 (331)
Q Consensus 94 ~~~---------------i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~ 147 (331)
... +..... ..++.|++|||++.+++..++.|++++++.. .++++|++
T Consensus 644 ~~LiG~~pgy~g~~~~g~l~~~v~------~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~T 717 (857)
T PRK10865 644 SRLVGAPPGYVGYEEGGYLTEAVR------RRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMT 717 (857)
T ss_pred HHHhCCCCcccccchhHHHHHHHH------hCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEe
Confidence 111 111110 2245799999999999999999999998641 34568888
Q ss_pred eCCC-------------------------CCCChhhhccc-ceeeecCCCHHHHHHHHHHHHHh-------cC--CCCCH
Q 020071 148 CNVS-------------------------SKIIEPIQSRC-AIVRFSRLSDEEILSRLMVVVQE-------EK--VPYVP 192 (331)
Q Consensus 148 ~~~~-------------------------~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~-------~~--~~i~~ 192 (331)
||.. ..+.|.+.+|+ .++.|.|++.+++..++...+.+ .+ +.+++
T Consensus 718 SN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~ 797 (857)
T PRK10865 718 SNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISD 797 (857)
T ss_pred CCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCH
Confidence 8752 12457888998 78899999999998887665543 23 45799
Q ss_pred HHHHHHHHhcC---CCHHHHHHHHHH
Q 020071 193 EGLEAIIFTAD---GDMRQALNNLQA 215 (331)
Q Consensus 193 ~~~~~l~~~~~---g~~r~~~~~l~~ 215 (331)
+++++|++..- ...|.+.+.++.
T Consensus 798 ~al~~L~~~gy~~~~GARpL~r~I~~ 823 (857)
T PRK10865 798 EALKLLSENGYDPVYGARPLKRAIQQ 823 (857)
T ss_pred HHHHHHHHcCCCccCChHHHHHHHHH
Confidence 99999998652 245666666654
No 153
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.58 E-value=1.9e-13 Score=114.30 Aligned_cols=119 Identities=21% Similarity=0.214 Sum_probs=100.6
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCC-------------CCCCChhhhcccceeeecCCCHHHHHHH
Q 020071 112 HKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNV-------------SSKIIEPIQSRCAIVRFSRLSDEEILSR 178 (331)
Q Consensus 112 ~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~-------------~~~l~~~l~sr~~~i~~~~~~~~~~~~~ 178 (331)
+.|+||||+|.|.-+....|.+.+|.|-. -.+||++|. +..+++.+..|..+++..++++++++++
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~ia-PivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~I 375 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESPIA-PIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQI 375 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCCCC-ceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHH
Confidence 67999999999999999999999997654 346777765 4578899999999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHH---Hh--hCCCccchhhhhhh
Q 020071 179 LMVVVQEEKVPYVPEGLEAIIFTA-DGDMRQALNNLQA---TY--SGFRFVNQENVFKV 231 (331)
Q Consensus 179 l~~~~~~~~~~i~~~~~~~l~~~~-~g~~r~~~~~l~~---~~--~~~~~i~~~~v~~~ 231 (331)
++.+++.+++.++++++..++... ..++|.+++++-- ++ .++..|..+++.++
T Consensus 376 i~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~ 434 (456)
T KOG1942|consen 376 IKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEV 434 (456)
T ss_pred HHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHH
Confidence 999999999999999999999875 4689999988852 22 45667888888663
No 154
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.57 E-value=1.5e-13 Score=136.57 Aligned_cols=184 Identities=20% Similarity=0.235 Sum_probs=132.9
Q ss_pred CccccCHHHHHHHHHHHHcC--------CCC-eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHH
Q 020071 25 CDIVGNLDAVARLGIIARDG--------NMP-NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRN 95 (331)
Q Consensus 25 ~~~ig~~~~~~~l~~~l~~~--------~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 95 (331)
..++||+.++..+...+... ++. .++|+||+|+|||++|+.+++.+.+. ..+++.++++..........
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~~~~ 642 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHSVAR 642 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccchHHH
Confidence 46899999999998888652 122 38999999999999999999998765 34667777654322111111
Q ss_pred H---------------HHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCcEEEEeeC
Q 020071 96 K---------------IKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS-----------NSTRFALACN 149 (331)
Q Consensus 96 ~---------------i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~~ 149 (331)
. +..... ..++.||++||+++++++.++.|++++++.. .++++|++||
T Consensus 643 l~g~~~g~~g~~~~g~l~~~v~------~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn 716 (852)
T TIGR03346 643 LIGAPPGYVGYEEGGQLTEAVR------RKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSN 716 (852)
T ss_pred hcCCCCCccCcccccHHHHHHH------cCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCC
Confidence 1 111111 2345799999999999999999999998652 4667888887
Q ss_pred CCC-------------------------CCChhhhccc-ceeeecCCCHHHHHHHHHHHHH-------hc--CCCCCHHH
Q 020071 150 VSS-------------------------KIIEPIQSRC-AIVRFSRLSDEEILSRLMVVVQ-------EE--KVPYVPEG 194 (331)
Q Consensus 150 ~~~-------------------------~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~-------~~--~~~i~~~~ 194 (331)
... .+.|.+..|+ .++.|.|++.+++.+++..... .. .+.+++++
T Consensus 717 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a 796 (852)
T TIGR03346 717 LGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAA 796 (852)
T ss_pred cchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHH
Confidence 621 1335666777 5789999999998888765543 22 25689999
Q ss_pred HHHHHHhc---CCCHHHHHHHHHHH
Q 020071 195 LEAIIFTA---DGDMRQALNNLQAT 216 (331)
Q Consensus 195 ~~~l~~~~---~g~~r~~~~~l~~~ 216 (331)
.++|++.. .++.|.+.+.++..
T Consensus 797 ~~~L~~~~~~~~~gaR~L~~~i~~~ 821 (852)
T TIGR03346 797 LDFLAEAGYDPVYGARPLKRAIQRE 821 (852)
T ss_pred HHHHHHhCCCCCCCchhHHHHHHHH
Confidence 99999874 47889888888764
No 155
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.7e-13 Score=129.60 Aligned_cols=200 Identities=21% Similarity=0.220 Sum_probs=140.7
Q ss_pred CCCCCccccCHHHHHHHHHHHHc-----------CCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC-
Q 020071 21 PTKVCDIVGNLDAVARLGIIARD-----------GNMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD- 87 (331)
Q Consensus 21 p~~~~~~ig~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~- 87 (331)
+..|.|+.|.++++.+|...++- -++|. +||+||||||||.+|+++|.+. +.+|+.+++++.
T Consensus 307 ~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-----gVPF~svSGSEFv 381 (774)
T KOG0731|consen 307 GVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSVSGSEFV 381 (774)
T ss_pred CCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-----CCceeeechHHHH
Confidence 35899999999999988777642 35666 9999999999999999999998 889999888764
Q ss_pred -----CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH------------HH---HHHHHHHHHH--hcCCcEEE
Q 020071 88 -----RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA------------GA---QQALRRTMEI--YSNSTRFA 145 (331)
Q Consensus 88 -----~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~------------~~---~~~Ll~~le~--~~~~~~~I 145 (331)
.+...++++...... .-+.+|+|||+|.... +. .|.|+-=|+. ....++++
T Consensus 382 E~~~g~~asrvr~lf~~ar~-------~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~ 454 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARK-------NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVL 454 (774)
T ss_pred HHhcccchHHHHHHHHHhhc-------cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEE
Confidence 123345555544332 2367999999987632 22 3444444442 33567778
Q ss_pred EeeCCCCCCChhhhc--cc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHH-HHHH---h-
Q 020071 146 LACNVSSKIIEPIQS--RC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNN-LQAT---Y- 217 (331)
Q Consensus 146 ~~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~-l~~~---~- 217 (331)
.+||.+.-+.+++.+ |+ ..+....|+.....++++-.+++.....++..+..++.++.|..+.-+.. +..+ +
T Consensus 455 a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~ 534 (774)
T KOG0731|consen 455 AATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAA 534 (774)
T ss_pred eccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHH
Confidence 888989999999987 43 45789999999999999888776666545666666888887754443332 3222 2
Q ss_pred -hCCCccchhhhhhhc
Q 020071 218 -SGFRFVNQENVFKVC 232 (331)
Q Consensus 218 -~~~~~i~~~~v~~~~ 232 (331)
.+...|+..++..++
T Consensus 535 r~~~~~i~~~~~~~a~ 550 (774)
T KOG0731|consen 535 RKGLREIGTKDLEYAI 550 (774)
T ss_pred HhccCccchhhHHHHH
Confidence 445567766665543
No 156
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.57 E-value=3e-13 Score=120.21 Aligned_cols=192 Identities=15% Similarity=0.164 Sum_probs=134.8
Q ss_pred CCCccccCHHHHHHHHHHHHcC--CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHH
Q 020071 23 KVCDIVGNLDAVARLGIIARDG--NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMF 100 (331)
Q Consensus 23 ~~~~~ig~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 100 (331)
.+++++|.+..+..+.+.+..- ...+|+|+|++|+||+++|+.++..... ...+|+.++|.... .+.+...+-..
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r--~~~pfv~v~c~~~~-~~~~~~~lfg~ 80 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAALN-ENLLDSELFGH 80 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCc--cCCCeEEEeCCCCC-HHHHHHHHccc
Confidence 5788999999988887776652 2224999999999999999999975432 25689999998752 23333322110
Q ss_pred Hhc---------ccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCcEEEEeeCCC-------CC
Q 020071 101 AQK---------KVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS-----------NSTRFALACNVS-------SK 153 (331)
Q Consensus 101 ~~~---------~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~~~~-------~~ 153 (331)
... ...+.....++++|||++.|+...|..|++++++.. .++++|++++.. ..
T Consensus 81 ~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~ 160 (326)
T PRK11608 81 EAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGK 160 (326)
T ss_pred cccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCC
Confidence 000 001123457899999999999999999999998522 257888887652 34
Q ss_pred CChhhhccc--ceeeecCCCH--HHHHHHHHH----HHHhcC----CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHh
Q 020071 154 IIEPIQSRC--AIVRFSRLSD--EEILSRLMV----VVQEEK----VPYVPEGLEAIIFTA-DGDMRQALNNLQATY 217 (331)
Q Consensus 154 l~~~l~sr~--~~i~~~~~~~--~~~~~~l~~----~~~~~~----~~i~~~~~~~l~~~~-~g~~r~~~~~l~~~~ 217 (331)
+.+.+..|+ ..+.++|+.+ +++..++.. .+.+.+ ..+++++++.|..+. .||+|++.+.++.++
T Consensus 161 f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~ 237 (326)
T PRK11608 161 FRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV 237 (326)
T ss_pred chHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 557777775 4578888876 455444433 344433 358999999999876 799999999998875
No 157
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.56 E-value=2.3e-13 Score=127.28 Aligned_cols=207 Identities=14% Similarity=0.165 Sum_probs=141.9
Q ss_pred CCCCCccccCHHHHHHHHHHHHc--CCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHH
Q 020071 21 PTKVCDIVGNLDAVARLGIIARD--GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIK 98 (331)
Q Consensus 21 p~~~~~~ig~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~ 98 (331)
...|++++|.+..++.+.+.+.. ....+|+|+|++||||+.+|+.++..... ...+|+.+||.... ...+...+-
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r--~~~pfv~inC~~l~-e~lleseLF 284 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGR--RDFPFVAINCGAIA-ESLLEAELF 284 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCc--CCCCEEEeccccCC-hhHHHHHhc
Confidence 35688999999999988888764 22234999999999999999999986432 35689999998752 222332221
Q ss_pred HHHhcccC----------CCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCcEEEEeeCCC------
Q 020071 99 MFAQKKVT----------LPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS-----------NSTRFALACNVS------ 151 (331)
Q Consensus 99 ~~~~~~~~----------~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~~~~------ 151 (331)
......++ +.....+.++|||++.|+...|..|++++++.. .++++|++++..
T Consensus 285 G~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~ 364 (526)
T TIGR02329 285 GYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQ 364 (526)
T ss_pred CCcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhh
Confidence 11111110 112457899999999999999999999998532 356888887653
Q ss_pred -CCCChhhhccc--ceeeecCCCH--HHHHHHH----HHHHHhcCCCCCHHHHHH-------HHHhc-CCCHHHHHHHHH
Q 020071 152 -SKIIEPIQSRC--AIVRFSRLSD--EEILSRL----MVVVQEEKVPYVPEGLEA-------IIFTA-DGDMRQALNNLQ 214 (331)
Q Consensus 152 -~~l~~~l~sr~--~~i~~~~~~~--~~~~~~l----~~~~~~~~~~i~~~~~~~-------l~~~~-~g~~r~~~~~l~ 214 (331)
..+.+.+-.|. ..+.++|+.+ +++..++ .+.+...++.+++++++. |..+. .||+|++.+.++
T Consensus 365 ~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvie 444 (526)
T TIGR02329 365 QGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVE 444 (526)
T ss_pred hcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHH
Confidence 13334444553 5678888886 4554444 443444567789998887 66654 799999999998
Q ss_pred HHhh-----CCCccchhhhhh
Q 020071 215 ATYS-----GFRFVNQENVFK 230 (331)
Q Consensus 215 ~~~~-----~~~~i~~~~v~~ 230 (331)
.++. ....|+.+++..
T Consensus 445 r~~i~~~~~~~~~I~~~~l~~ 465 (526)
T TIGR02329 445 RLALELSAMPAGALTPDVLRA 465 (526)
T ss_pred HHHHhcccCCCCccCHHHhhh
Confidence 8753 234677776543
No 158
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3.8e-13 Score=122.52 Aligned_cols=184 Identities=19% Similarity=0.248 Sum_probs=129.2
Q ss_pred CCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC
Q 020071 22 TKVCDIVGNLDAVARLGIIARD-----------G-NMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR 88 (331)
Q Consensus 22 ~~~~~~ig~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (331)
.+|+|+=+.+++..+|..++-. | ..|. +|+|||||||||.+|+++|++. +.+|+.+.+++..
T Consensus 508 VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa-----g~NFisVKGPELl 582 (802)
T KOG0733|consen 508 VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA-----GANFISVKGPELL 582 (802)
T ss_pred CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc-----cCceEeecCHHHH
Confidence 3788888899998888777643 2 2344 9999999999999999999998 8899988876542
Q ss_pred Ch--HhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHHHh--cCCcEEEEeeCCCCC
Q 020071 89 GI--DVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA-----------GAQQALRRTMEIY--SNSTRFALACNVSSK 153 (331)
Q Consensus 89 ~~--~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~-----------~~~~~Ll~~le~~--~~~~~~I~~~~~~~~ 153 (331)
+. ..-...+....+..- .+-+.|||+||+|.|.+ ...|.|+-=|+.. ..++.+|.+||.+..
T Consensus 583 NkYVGESErAVR~vFqRAR---~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDi 659 (802)
T KOG0733|consen 583 NKYVGESERAVRQVFQRAR---ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDI 659 (802)
T ss_pred HHHhhhHHHHHHHHHHHhh---cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcc
Confidence 21 122222222222221 33478999999999843 3456666666633 346778888999999
Q ss_pred CChhhhc--cc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHh------cCCCHHHHHHHH
Q 020071 154 IIEPIQS--RC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPE-GLEAIIFT------ADGDMRQALNNL 213 (331)
Q Consensus 154 l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~------~~g~~r~~~~~l 213 (331)
+.|++.+ |+ ..+.+.+|+.++..++|+...+..+..++++ .++.|++. +|-|+-.++...
T Consensus 660 IDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreA 729 (802)
T KOG0733|consen 660 IDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREA 729 (802)
T ss_pred cchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHH
Confidence 9999987 43 4568888999999999999888655566554 36667654 344665555544
No 159
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.55 E-value=1.7e-13 Score=131.90 Aligned_cols=204 Identities=20% Similarity=0.216 Sum_probs=140.3
Q ss_pred hhhhcCCCCCCccccCHHHHHHHHHHHHc-----------CCCC-eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEe
Q 020071 15 WVEKYRPTKVCDIVGNLDAVARLGIIARD-----------GNMP-NLILAGPPGTGKTTSILALAHELLGPNYREAVMEL 82 (331)
Q Consensus 15 ~~~~~~p~~~~~~ig~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 82 (331)
|........|+++.|.+..+..+...+.- +..| +++|+||+|+|||++++.+++.+ +.+++.+
T Consensus 142 ~~~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~-----~~~f~~i 216 (644)
T PRK10733 142 LTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA-----KVPFFTI 216 (644)
T ss_pred cCchhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc-----CCCEEEE
Confidence 33344456889999999888877665532 2233 49999999999999999999988 6678877
Q ss_pred ecCCC------CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHHHh--cC
Q 020071 83 NASDD------RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA--------------GAQQALRRTMEIY--SN 140 (331)
Q Consensus 83 ~~~~~------~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~--------------~~~~~Ll~~le~~--~~ 140 (331)
++.+. .+...+++.+.... ...+.||||||+|.+.. ...+.|+.-|+.. ..
T Consensus 217 s~~~~~~~~~g~~~~~~~~~f~~a~-------~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~ 289 (644)
T PRK10733 217 SGSDFVEMFVGVGASRVRDMFEQAK-------KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 289 (644)
T ss_pred ehHHhHHhhhcccHHHHHHHHHHHH-------hcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC
Confidence 76542 12234444444432 22467999999998832 1235555555543 34
Q ss_pred CcEEEEeeCCCCCCChhhhc--cc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC----CHHHHHHHH
Q 020071 141 STRFALACNVSSKIIEPIQS--RC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG----DMRQALNNL 213 (331)
Q Consensus 141 ~~~~I~~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g----~~r~~~~~l 213 (331)
.+.+|.+||.++.+.+++.+ |+ ..+.++.|+.++..++++...++..+. ++..+..+++.+.| |+..+++..
T Consensus 290 ~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-~~~d~~~la~~t~G~sgadl~~l~~eA 368 (644)
T PRK10733 290 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEA 368 (644)
T ss_pred CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-CcCCHHHHHhhCCCCCHHHHHHHHHHH
Confidence 57788889999999999986 66 567999999999999998887654432 12235668887776 666666665
Q ss_pred HHHh--hCCCccchhhhhhh
Q 020071 214 QATY--SGFRFVNQENVFKV 231 (331)
Q Consensus 214 ~~~~--~~~~~i~~~~v~~~ 231 (331)
...+ .+...|+.+++.+.
T Consensus 369 a~~a~r~~~~~i~~~d~~~a 388 (644)
T PRK10733 369 ALFAARGNKRVVSMVEFEKA 388 (644)
T ss_pred HHHHHHcCCCcccHHHHHHH
Confidence 4332 35567888887654
No 160
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.3e-13 Score=117.89 Aligned_cols=170 Identities=24% Similarity=0.245 Sum_probs=110.9
Q ss_pred CCCCccccCHHHHHHHHHHHH----------cCCCC--eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC-
Q 020071 22 TKVCDIVGNLDAVARLGIIAR----------DGNMP--NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR- 88 (331)
Q Consensus 22 ~~~~~~ig~~~~~~~l~~~l~----------~~~~~--~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~- 88 (331)
..|+|+.|..++++.|+.++- ....| .+|++||||+|||.+|++++.+. +..|+.+..+...
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc-----~tTFFNVSsstltS 283 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC-----GTTFFNVSSSTLTS 283 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh-----cCeEEEechhhhhh
Confidence 479999999999999888753 22222 39999999999999999999987 6778887766542
Q ss_pred ---C--hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH------------HHHHHHHHHHHHhc-----CCcEEEE
Q 020071 89 ---G--IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA------------GAQQALRRTMEIYS-----NSTRFAL 146 (331)
Q Consensus 89 ---~--~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~------------~~~~~Ll~~le~~~-----~~~~~I~ 146 (331)
| ...++-++..+.. --+.+|||||+|.+.. .....|+-.|+... ..+++|+
T Consensus 284 KwRGeSEKlvRlLFemARf-------yAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVL 356 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARF-------YAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVL 356 (491)
T ss_pred hhccchHHHHHHHHHHHHH-------hCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEE
Confidence 2 1222323222222 2256999999998832 23566777776322 2345655
Q ss_pred e-eCCCCCCChhhhcccce-eeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Q 020071 147 A-CNVSSKIIEPIQSRCAI-VRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG 204 (331)
Q Consensus 147 ~-~~~~~~l~~~l~sr~~~-i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g 204 (331)
+ ||-+..+..++++|+.. |.++-|+.+.....+ +++-..-...++-.++.|++.+.|
T Consensus 357 AATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li-~~~l~~~~~~~~~~~~~lae~~eG 415 (491)
T KOG0738|consen 357 AATNFPWDIDEALRRRLEKRIYIPLPDAEARSALI-KILLRSVELDDPVNLEDLAERSEG 415 (491)
T ss_pred eccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHH-HHhhccccCCCCccHHHHHHHhcC
Confidence 5 56688999999999865 445444444444444 443333223344456777777655
No 161
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.54 E-value=3.1e-13 Score=126.29 Aligned_cols=195 Identities=14% Similarity=0.189 Sum_probs=132.6
Q ss_pred CCCCccccCHHHHHHHHHHHHc--CCCCeEEEeCCCCccHHHHHHHHHHHhc------CCCCCCceEEeecCCCCChHhH
Q 020071 22 TKVCDIVGNLDAVARLGIIARD--GNMPNLILAGPPGTGKTTSILALAHELL------GPNYREAVMELNASDDRGIDVV 93 (331)
Q Consensus 22 ~~~~~~ig~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~l~~~l~------~~~~~~~~~~~~~~~~~~~~~i 93 (331)
..|++++|++..++.+.+.+.. ....+|+|+|++||||+.+|+.+.+.+. ......+|+.+||.... .+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~-e~ll 294 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIA-ESLL 294 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCC-hhhH
Confidence 3688999999999988888764 2223499999999999999999998732 22235689999998753 2333
Q ss_pred HHHHHHHHhccc----------CCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh-----------cCCcEEEEeeCCC-
Q 020071 94 RNKIKMFAQKKV----------TLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY-----------SNSTRFALACNVS- 151 (331)
Q Consensus 94 ~~~i~~~~~~~~----------~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~~~~- 151 (331)
...+-......+ .+..+..+++||||++.|+...|..|++++++. +.++++|++++..
T Consensus 295 eseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L 374 (538)
T PRK15424 295 EAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDL 374 (538)
T ss_pred HHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCH
Confidence 332211111111 111345789999999999999999999999852 2356888887653
Q ss_pred ------CCCChhhhccc--ceeeecCCCH--HHHHHHHHHHHH----hcCCCCCHHHH-------HHHHHhc-CCCHHHH
Q 020071 152 ------SKIIEPIQSRC--AIVRFSRLSD--EEILSRLMVVVQ----EEKVPYVPEGL-------EAIIFTA-DGDMRQA 209 (331)
Q Consensus 152 ------~~l~~~l~sr~--~~i~~~~~~~--~~~~~~l~~~~~----~~~~~i~~~~~-------~~l~~~~-~g~~r~~ 209 (331)
..+.+.+-.|. ..+.++|+.+ +++..++...++ ..+..+++++. +.|..+. .||+|++
T Consensus 375 ~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL 454 (538)
T PRK15424 375 EEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVREL 454 (538)
T ss_pred HHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHH
Confidence 12334455553 4567888876 455555444443 45667888776 3444433 6999999
Q ss_pred HHHHHHHh
Q 020071 210 LNNLQATY 217 (331)
Q Consensus 210 ~~~l~~~~ 217 (331)
.+.++.++
T Consensus 455 ~nvier~~ 462 (538)
T PRK15424 455 RNLMERLA 462 (538)
T ss_pred HHHHHHHH
Confidence 99998765
No 162
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.54 E-value=4.7e-14 Score=108.88 Aligned_cols=106 Identities=28% Similarity=0.312 Sum_probs=82.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC------ChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR------GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~------~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~ 122 (331)
++|+||+|+|||++++.+++.+ +.+++.+++.... ....+.+.+....... .+.|++|||+|.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-----~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~~~vl~iDe~d~ 69 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-----GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSA------KPCVLFIDEIDK 69 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-----TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTS------TSEEEEEETGGG
T ss_pred CEEECcCCCCeeHHHHHHHhhc-----ccccccccccccccccccccccccccccccccccc------cceeeeeccchh
Confidence 6899999999999999999998 7888998876543 1223334444332221 368999999999
Q ss_pred CCHHH-----------HHHHHHHHHHhcC---CcEEEEeeCCCCCCChhhh-ccccee
Q 020071 123 MTAGA-----------QQALRRTMEIYSN---STRFALACNVSSKIIEPIQ-SRCAIV 165 (331)
Q Consensus 123 l~~~~-----------~~~Ll~~le~~~~---~~~~I~~~~~~~~l~~~l~-sr~~~i 165 (331)
+.... .+.|+..++.... .+.+|++||..+.+.+++. +||...
T Consensus 70 l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~ 127 (132)
T PF00004_consen 70 LFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRR 127 (132)
T ss_dssp TSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEE
T ss_pred cccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEE
Confidence 97765 7888899987665 4889999999999999999 888653
No 163
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3.4e-13 Score=125.41 Aligned_cols=214 Identities=21% Similarity=0.279 Sum_probs=144.5
Q ss_pred CCCchhhhcCCCC--------C-CccccCHHHHHHHHHHHH------cCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCC
Q 020071 11 YDIPWVEKYRPTK--------V-CDIVGNLDAVARLGIIAR------DGNMPNLILAGPPGTGKTTSILALAHELLGPNY 75 (331)
Q Consensus 11 ~~~~~~~~~~p~~--------~-~~~ig~~~~~~~l~~~l~------~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~ 75 (331)
.++||..+-.-.. + .|=.|-+++++++..++. +-+-|-++|+||||+|||++++.+|+.+
T Consensus 300 l~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al----- 374 (782)
T COG0466 300 LDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL----- 374 (782)
T ss_pred HhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh-----
Confidence 4678887544221 1 134577888887766653 1222447999999999999999999999
Q ss_pred CCceEEeecCCCCChHhHHH------------HHHHHHhcccCCCCCCceEEEEeCCCCCCH----HHHHHHHHHHHH--
Q 020071 76 REAVMELNASDDRGIDVVRN------------KIKMFAQKKVTLPPGKHKVVVLDEADSMTA----GAQQALRRTMEI-- 137 (331)
Q Consensus 76 ~~~~~~~~~~~~~~~~~i~~------------~i~~~~~~~~~~~~~~~~vviide~d~l~~----~~~~~Ll~~le~-- 137 (331)
+..|+.+.-...+....|+. +++...... ....|+++||+|+|+. +...+|+++|+-
T Consensus 375 ~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~-----~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQ 449 (782)
T COG0466 375 GRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAG-----VKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQ 449 (782)
T ss_pred CCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhC-----CcCCeEEeechhhccCCCCCChHHHHHhhcCHhh
Confidence 77888887655444333333 233322222 2356999999999964 456788888761
Q ss_pred -----------h--cCCcEEEEeeCCCCCCChhhhcccceeeecCCCHHHHHHHHHHH-----HHhc-----CCCCCHHH
Q 020071 138 -----------Y--SNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV-----VQEE-----KVPYVPEG 194 (331)
Q Consensus 138 -----------~--~~~~~~I~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~-----~~~~-----~~~i~~~~ 194 (331)
+ -.++.||.|+|+.+.++.+|+.|..++++..++++|-.++.++. .+.. .+.+++++
T Consensus 450 N~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~a 529 (782)
T COG0466 450 NNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEA 529 (782)
T ss_pred cCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHH
Confidence 1 14678999999999999999999999999999999877776554 2333 35689999
Q ss_pred HHHHHHhcC--CCHHHHHHHHHHH----h-----h-CCC--ccchhhhhhhcCC
Q 020071 195 LEAIIFTAD--GDMRQALNNLQAT----Y-----S-GFR--FVNQENVFKVCDQ 234 (331)
Q Consensus 195 ~~~l~~~~~--g~~r~~~~~l~~~----~-----~-~~~--~i~~~~v~~~~~~ 234 (331)
+..|++... .-.|.+-..+.++ + . ... .|+..++.+.++.
T Consensus 530 i~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~ 583 (782)
T COG0466 530 IKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGV 583 (782)
T ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCC
Confidence 999887642 2344444444332 2 1 111 4666677776665
No 164
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.54 E-value=3.7e-13 Score=121.96 Aligned_cols=207 Identities=17% Similarity=0.204 Sum_probs=143.8
Q ss_pred CCCCCCccccCHHHHHHHHHHHHcCCC--CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHH
Q 020071 20 RPTKVCDIVGNLDAVARLGIIARDGNM--PNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKI 97 (331)
Q Consensus 20 ~p~~~~~~ig~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i 97 (331)
.+-+|++|+|....+..+.+.++.... ..+|+.|++||||..+|+++++.-... ..+|+.+||... ...-+...+
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~--~~PFIaiNCaAi-Pe~LlESEL 316 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRA--NGPFIAINCAAI-PETLLESEL 316 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCccc--CCCeEEEecccC-CHHHHHHHH
Confidence 445899999999999888888776532 239999999999999999999865433 668999999875 333344433
Q ss_pred HHHHhcccC----------CCCCCceEEEEeCCCCCCHHHHHHHHHHHHH-----------hcCCcEEEEeeCCC-----
Q 020071 98 KMFAQKKVT----------LPPGKHKVVVLDEADSMTAGAQQALRRTMEI-----------YSNSTRFALACNVS----- 151 (331)
Q Consensus 98 ~~~~~~~~~----------~~~~~~~vviide~d~l~~~~~~~Ll~~le~-----------~~~~~~~I~~~~~~----- 151 (331)
-.+...+|+ +..+..+.+|+||+..|+...|..|+++|++ .+.++++|.+||..
T Consensus 317 FGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~i 396 (560)
T COG3829 317 FGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKMI 396 (560)
T ss_pred hCcCCccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHHH
Confidence 333333332 1124678999999999999999999999985 24578899998863
Q ss_pred --CCCChhhhccccee--eecCCCH--HHH----HHHHHHHHHhcC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHh
Q 020071 152 --SKIIEPIQSRCAIV--RFSRLSD--EEI----LSRLMVVVQEEK---VPYVPEGLEAIIFTA-DGDMRQALNNLQATY 217 (331)
Q Consensus 152 --~~l~~~l~sr~~~i--~~~~~~~--~~~----~~~l~~~~~~~~---~~i~~~~~~~l~~~~-~g~~r~~~~~l~~~~ 217 (331)
..+-..|--|..++ .++|+.+ +++ ..++.+..++.+ ..+++++...|.++. .||+|.+.|.++.+.
T Consensus 397 ~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v 476 (560)
T COG3829 397 AEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERAV 476 (560)
T ss_pred hcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 23334444455443 5555554 333 233333344443 237899999988875 799999999998764
Q ss_pred ---hCCCccchhhhh
Q 020071 218 ---SGFRFVNQENVF 229 (331)
Q Consensus 218 ---~~~~~i~~~~v~ 229 (331)
.....|+.++.-
T Consensus 477 ~~~~~~~~I~~~~lp 491 (560)
T COG3829 477 NLVESDGLIDADDLP 491 (560)
T ss_pred hccCCcceeehhhcc
Confidence 344556666553
No 165
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.54 E-value=5.3e-13 Score=125.82 Aligned_cols=206 Identities=18% Similarity=0.158 Sum_probs=141.1
Q ss_pred CCCCCCccccCHHHHHHHHHHHHcC--CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHH
Q 020071 20 RPTKVCDIVGNLDAVARLGIIARDG--NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKI 97 (331)
Q Consensus 20 ~p~~~~~~ig~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i 97 (331)
....|++++|.+..+..+.+.++.- ...+++|+|++||||+.+|++++..... ...+|+.+||.... .+.+...+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r--~~~pfv~inca~~~-~~~~e~el 275 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPR--GKKPFLALNCASIP-DDVVESEL 275 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCC--CCCCeEEeccccCC-HHHHHHHh
Confidence 3458999999998888777666532 2223999999999999999998876432 24688999998753 22222221
Q ss_pred HHHHhccc---------CCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh-----------cCCcEEEEeeCCC------
Q 020071 98 KMFAQKKV---------TLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY-----------SNSTRFALACNVS------ 151 (331)
Q Consensus 98 ~~~~~~~~---------~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~~~~------ 151 (331)
-......+ .+..+..++++|||++.|+...|..|++++++. +.++++|++++..
T Consensus 276 FG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~ 355 (520)
T PRK10820 276 FGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQ 355 (520)
T ss_pred cCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHH
Confidence 10000000 011245789999999999999999999999863 2356888877653
Q ss_pred -CCCChhhhccc--ceeeecCCCH--HHHHHH----HHHHHHhcCC---CCCHHHHHHHHHh-cCCCHHHHHHHHHHHhh
Q 020071 152 -SKIIEPIQSRC--AIVRFSRLSD--EEILSR----LMVVVQEEKV---PYVPEGLEAIIFT-ADGDMRQALNNLQATYS 218 (331)
Q Consensus 152 -~~l~~~l~sr~--~~i~~~~~~~--~~~~~~----l~~~~~~~~~---~i~~~~~~~l~~~-~~g~~r~~~~~l~~~~~ 218 (331)
..+.+.+..|. ..+.++|+.+ +++..+ +.+.+.+.|. .+++++++.|..+ -.||+|++.+.++.+..
T Consensus 356 ~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~ 435 (520)
T PRK10820 356 KGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALT 435 (520)
T ss_pred cCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 23556677774 4578888876 344433 4444555543 6899999999988 58999999999987753
Q ss_pred --CCCccchhhh
Q 020071 219 --GFRFVNQENV 228 (331)
Q Consensus 219 --~~~~i~~~~v 228 (331)
.+..|+.+++
T Consensus 436 ~~~~~~i~~~~~ 447 (520)
T PRK10820 436 QLEGYELRPQDI 447 (520)
T ss_pred hCCCCcccHHHc
Confidence 4456777764
No 166
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=2.5e-12 Score=114.19 Aligned_cols=190 Identities=17% Similarity=0.222 Sum_probs=138.5
Q ss_pred CccccCHHHHHHHHHHHHcC----CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHH-HH---
Q 020071 25 CDIVGNLDAVARLGIIARDG----NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVR-NK--- 96 (331)
Q Consensus 25 ~~~ig~~~~~~~l~~~l~~~----~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~-~~--- 96 (331)
+.+.|++..+..++.++... ....++++|.||+|||.+...+...+.+.......+.+||........+- .+
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~ 229 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSS 229 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHH
Confidence 45789999999888887652 33349999999999999999999888777666677888887642221111 11
Q ss_pred --------------HHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh---cCCcEEEEeeCCC---CCCCh
Q 020071 97 --------------IKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY---SNSTRFALACNVS---SKIIE 156 (331)
Q Consensus 97 --------------i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~---~~~~~~I~~~~~~---~~l~~ 156 (331)
...+...--. ....-++|+||.|.|....+..|..+.+.| ...+++|.++|.. +++++
T Consensus 230 ~~q~~~s~~~~~~~~~~~~~h~~q--~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 230 LLQDLVSPGTGMQHLEKFEKHTKQ--SKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLP 307 (529)
T ss_pred HHHHhcCCchhHHHHHHHHHHHhc--ccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhh
Confidence 1111111110 123579999999999888888888888764 3566677778874 57888
Q ss_pred hhhccc----ceeeecCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHhc---CCCHHHHHHHHHHH
Q 020071 157 PIQSRC----AIVRFSRLSDEEILSRLMVVVQEEKVP-YVPEGLEAIIFTA---DGDMRQALNNLQAT 216 (331)
Q Consensus 157 ~l~sr~----~~i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~~~~l~~~~---~g~~r~~~~~l~~~ 216 (331)
.|..|+ .++.|+|++.+++.+++.++...+... +-+.+++.+|+.. .||+|+|+..++.+
T Consensus 308 rL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~a 375 (529)
T KOG2227|consen 308 RLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRA 375 (529)
T ss_pred hhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 888864 568999999999999999998876543 3445788888653 68999999999843
No 167
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.53 E-value=1.1e-12 Score=116.01 Aligned_cols=217 Identities=19% Similarity=0.210 Sum_probs=136.1
Q ss_pred hhhhcCCC-CCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCC--CceE-----------
Q 020071 15 WVEKYRPT-KVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYR--EAVM----------- 80 (331)
Q Consensus 15 ~~~~~~p~-~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~--~~~~----------- 80 (331)
+.++-+|. .|.+++||++++..|...+.+..+.+++|.|++|+|||++++.+++.+.+...- .+|.
T Consensus 6 ~~~~~~~~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~ 85 (350)
T CHL00081 6 LKKKERPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSD 85 (350)
T ss_pred hhhccCCCCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhch
Confidence 34444555 899999999999999999988888789999999999999999998887642200 0111
Q ss_pred ----------------------EeecC--CC--CChHhHHHHHHHHHh--cccCCCCCCceEEEEeCCCCCCHHHHHHHH
Q 020071 81 ----------------------ELNAS--DD--RGIDVVRNKIKMFAQ--KKVTLPPGKHKVVVLDEADSMTAGAQQALR 132 (331)
Q Consensus 81 ----------------------~~~~~--~~--~~~~~i~~~i~~~~~--~~~~~~~~~~~vviide~d~l~~~~~~~Ll 132 (331)
.+... +. .|.=++...+..... .+..+...++.++++||++.+++..|..|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LL 165 (350)
T CHL00081 86 EVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILL 165 (350)
T ss_pred hhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHH
Confidence 00000 00 000001111111000 011112346789999999999999999999
Q ss_pred HHHHHhc-----------CCcEEEEe--eCCC-CCCChhhhcccce-eeecCCC-HHHHHHHHHHHHH------------
Q 020071 133 RTMEIYS-----------NSTRFALA--CNVS-SKIIEPIQSRCAI-VRFSRLS-DEEILSRLMVVVQ------------ 184 (331)
Q Consensus 133 ~~le~~~-----------~~~~~I~~--~~~~-~~l~~~l~sr~~~-i~~~~~~-~~~~~~~l~~~~~------------ 184 (331)
+.|++.. ..++|+++ .|.. ..+.+.+..|+.. +.+..++ .++-.+++++...
T Consensus 166 eam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~ 245 (350)
T CHL00081 166 DSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKY 245 (350)
T ss_pred HHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhh
Confidence 9998621 12234443 3333 3688999999754 5666665 3444444443211
Q ss_pred -----------------hcCCCCCHHHHHHHHHhc---C-CCHHHHHHHHHHH-----hhCCCccchhhhhhh
Q 020071 185 -----------------EEKVPYVPEGLEAIIFTA---D-GDMRQALNNLQAT-----YSGFRFVNQENVFKV 231 (331)
Q Consensus 185 -----------------~~~~~i~~~~~~~l~~~~---~-g~~r~~~~~l~~~-----~~~~~~i~~~~v~~~ 231 (331)
-..+.++++.++++++.+ + ..+|..+..++.+ ..+...++.+||..+
T Consensus 246 ~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~ 318 (350)
T CHL00081 246 EESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKV 318 (350)
T ss_pred ccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 134678888888877654 2 2577777776543 267778888888764
No 168
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.53 E-value=2.2e-13 Score=121.22 Aligned_cols=194 Identities=16% Similarity=0.197 Sum_probs=135.2
Q ss_pred CCCCccccCHHHHHHHHHHHHcCCC--CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHH
Q 020071 22 TKVCDIVGNLDAVARLGIIARDGNM--PNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKM 99 (331)
Q Consensus 22 ~~~~~~ig~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 99 (331)
..++++||.....+.+.+.++.-.. .++|+.|++|+||+.+|+.++..-.. ....+|+.+||......-..-+ +=.
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r-~~~~PFI~~NCa~~~en~~~~e-LFG 152 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSAR-RAEAPFIAFNCAAYSENLQEAE-LFG 152 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhc-ccCCCEEEEEHHHhCcCHHHHH-Hhc
Confidence 3678999999999988888877322 23999999999999999999943322 1678999999987633222222 111
Q ss_pred HHhcccC---------CCCCCceEEEEeCCCCCCHHHHHHHHHHHHH-----------hcCCcEEEEeeCCC--CCCCh-
Q 020071 100 FAQKKVT---------LPPGKHKVVVLDEADSMTAGAQQALRRTMEI-----------YSNSTRFALACNVS--SKIIE- 156 (331)
Q Consensus 100 ~~~~~~~---------~~~~~~~vviide~d~l~~~~~~~Ll~~le~-----------~~~~~~~I~~~~~~--~~l~~- 156 (331)
.....++ +...+++++++||++.|+...|..|+++||+ .+.++++|++|+.. +.+.+
T Consensus 153 ~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g 232 (403)
T COG1221 153 HEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAG 232 (403)
T ss_pred cccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhh
Confidence 1111111 1234689999999999999999999999996 45688888887653 44555
Q ss_pred -hhhccc--ceeeecCCCH--HHH----HHHHHHHHHhcCCCC---CHHHHHHHHHh-cCCCHHHHHHHHHHHh
Q 020071 157 -PIQSRC--AIVRFSRLSD--EEI----LSRLMVVVQEEKVPY---VPEGLEAIIFT-ADGDMRQALNNLQATY 217 (331)
Q Consensus 157 -~l~sr~--~~i~~~~~~~--~~~----~~~l~~~~~~~~~~i---~~~~~~~l~~~-~~g~~r~~~~~l~~~~ 217 (331)
++..|+ ..++++|+.+ .|+ ..++...+++.+..+ +++++..+..+ ..||+|++.|.++.++
T Consensus 233 ~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~ 306 (403)
T COG1221 233 ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAV 306 (403)
T ss_pred cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 666654 4568888776 233 333445555555443 34677777766 4899999999998764
No 169
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=7.7e-13 Score=108.46 Aligned_cols=160 Identities=19% Similarity=0.282 Sum_probs=115.8
Q ss_pred hcCCC-CCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEee
Q 020071 18 KYRPT-KVCDIVGNLDAVARLGIIARD-----------G-NMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELN 83 (331)
Q Consensus 18 ~~~p~-~~~~~ig~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 83 (331)
.-+|. +..|+-|-+-.+++++..++- | .+|. +|+|||||+|||.+++++++.. ...|+.+.
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t-----~a~firvv 221 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT-----TAAFIRVV 221 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc-----chheeeec
Confidence 33444 677888877777777776542 2 3344 9999999999999999999987 67788887
Q ss_pred cCCC------CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHHH-----hcCC
Q 020071 84 ASDD------RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT-----------AGAQQALRRTMEI-----YSNS 141 (331)
Q Consensus 84 ~~~~------~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~-----------~~~~~~Ll~~le~-----~~~~ 141 (331)
+++. .|...+++.+.-+.+ ..+.++||||+|.+. .+.|..|++++.. ...+
T Consensus 222 gsefvqkylgegprmvrdvfrlake-------napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~n 294 (408)
T KOG0727|consen 222 GSEFVQKYLGEGPRMVRDVFRLAKE-------NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTN 294 (408)
T ss_pred cHHHHHHHhccCcHHHHHHHHHHhc-------cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccc
Confidence 7643 244456666554443 336799999998763 3456667766653 4568
Q ss_pred cEEEEeeCCCCCCChhhhccc---ceeeecCCCHHHHHHHHHHHHHhcCCC
Q 020071 142 TRFALACNVSSKIIEPIQSRC---AIVRFSRLSDEEILSRLMVVVQEEKVP 189 (331)
Q Consensus 142 ~~~I~~~~~~~~l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~ 189 (331)
+.+|+++|...-+.|++.+-+ ..++|+-++..+-+-.+..+..+-++.
T Consensus 295 vkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls 345 (408)
T KOG0727|consen 295 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS 345 (408)
T ss_pred eEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC
Confidence 899999999999999998743 458998888777777777777666543
No 170
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=4e-13 Score=128.07 Aligned_cols=184 Identities=21% Similarity=0.269 Sum_probs=131.0
Q ss_pred ccccCHHHHHHHHHHHHcC-------CCC--eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHH
Q 020071 26 DIVGNLDAVARLGIIARDG-------NMP--NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNK 96 (331)
Q Consensus 26 ~~ig~~~~~~~l~~~l~~~-------~~~--~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 96 (331)
.++||++++..+.+.++.. +.| +++|.||+|+|||.+|++++..+++. ...++.+++++......+..+
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~--e~aliR~DMSEy~EkHsVSrL 569 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD--EQALIRIDMSEYMEKHSVSRL 569 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC--CccceeechHHHHHHHHHHHH
Confidence 5899999999998887652 223 38999999999999999999999765 356777877655222222222
Q ss_pred HHHHHhcccC-------------CCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCcEEEEeeCCCC
Q 020071 97 IKMFAQKKVT-------------LPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS-----------NSTRFALACNVSS 152 (331)
Q Consensus 97 i~~~~~~~~~-------------~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~~~~~ 152 (331)
+ ..|.. ....++.||++||+++.+++..|.|+++|++.. .++++|+|+|--.
T Consensus 570 I----GaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs 645 (786)
T COG0542 570 I----GAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGS 645 (786)
T ss_pred h----CCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccch
Confidence 1 11110 002457899999999999999999999999532 4778888876410
Q ss_pred ----------------------------CCChhhhcccc-eeeecCCCHHHHHHHHHHHHH-------hcC--CCCCHHH
Q 020071 153 ----------------------------KIIEPIQSRCA-IVRFSRLSDEEILSRLMVVVQ-------EEK--VPYVPEG 194 (331)
Q Consensus 153 ----------------------------~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~-------~~~--~~i~~~~ 194 (331)
.+.|.+.+|.. ++.|.|++.+.+.+++....+ ..+ +.+++++
T Consensus 646 ~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a 725 (786)
T COG0542 646 EEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEA 725 (786)
T ss_pred HHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHH
Confidence 13477777876 889999999999888766543 334 4568999
Q ss_pred HHHHHHhcC---CCHHHHHHHHHH
Q 020071 195 LEAIIFTAD---GDMRQALNNLQA 215 (331)
Q Consensus 195 ~~~l~~~~~---g~~r~~~~~l~~ 215 (331)
.++|++... .-.|-+.+.++.
T Consensus 726 ~~~l~~~gyd~~~GARpL~R~Iq~ 749 (786)
T COG0542 726 KDFLAEKGYDPEYGARPLRRAIQQ 749 (786)
T ss_pred HHHHHHhccCCCcCchHHHHHHHH
Confidence 999998763 234555555544
No 171
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=6.9e-13 Score=125.08 Aligned_cols=182 Identities=21% Similarity=0.242 Sum_probs=130.9
Q ss_pred CCCCccccCHHHHHHHHHHHHc-----------C-CCC-eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC
Q 020071 22 TKVCDIVGNLDAVARLGIIARD-----------G-NMP-NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR 88 (331)
Q Consensus 22 ~~~~~~ig~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (331)
.+|.++.|.+.....+...+.. + ..+ .+|||||||+|||.+|++++... +.+|+.+..++..
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~-----~~~fi~v~~~~l~ 313 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES-----RSRFISVKGSELL 313 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC-----CCeEEEeeCHHHh
Confidence 4788898888888877666542 2 222 38999999999999999999987 7888888877543
Q ss_pred C------hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHH--HhcCCcEEEEeeC
Q 020071 89 G------IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT-----------AGAQQALRRTME--IYSNSTRFALACN 149 (331)
Q Consensus 89 ~------~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~-----------~~~~~~Ll~~le--~~~~~~~~I~~~~ 149 (331)
+ ...+++.+..+.. ..+.+|||||+|.+. ....+.|+..++ +...++.+|.+||
T Consensus 314 sk~vGesek~ir~~F~~A~~-------~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN 386 (494)
T COG0464 314 SKWVGESEKNIRELFEKARK-------LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATN 386 (494)
T ss_pred ccccchHHHHHHHHHHHHHc-------CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCC
Confidence 2 1234444444332 336799999999883 245677777775 4556777888899
Q ss_pred CCCCCChhhhc--ccc-eeeecCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHhcCC-CHHHHHHHHHH
Q 020071 150 VSSKIIEPIQS--RCA-IVRFSRLSDEEILSRLMVVVQEEKVP-YVPEGLEAIIFTADG-DMRQALNNLQA 215 (331)
Q Consensus 150 ~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~~~~l~~~~~g-~~r~~~~~l~~ 215 (331)
.+..+.+++.+ |+. .+.+++|+..+..++++......+.. .++-..+.+++.+.| ....+...++.
T Consensus 387 ~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~e 457 (494)
T COG0464 387 RPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVRE 457 (494)
T ss_pred CccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHH
Confidence 99999999998 874 57999999999999999988765543 234567778876655 33334444443
No 172
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=6.4e-13 Score=117.85 Aligned_cols=159 Identities=16% Similarity=0.172 Sum_probs=115.8
Q ss_pred CCCchhh--hcCCCCCCccccCHHHHHHHHHHH----Hc-------CCC-C-eEEEeCCCCccHHHHHHHHHHHhcCCCC
Q 020071 11 YDIPWVE--KYRPTKVCDIVGNLDAVARLGIIA----RD-------GNM-P-NLILAGPPGTGKTTSILALAHELLGPNY 75 (331)
Q Consensus 11 ~~~~~~~--~~~p~~~~~~ig~~~~~~~l~~~l----~~-------~~~-~-~~ll~G~~G~GKt~la~~l~~~l~~~~~ 75 (331)
+...|.- --+|.+|+.++-.+..++.+..-+ ++ |+. . .+|||||||||||+++.++|+.+
T Consensus 185 ~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L----- 259 (457)
T KOG0743|consen 185 KGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL----- 259 (457)
T ss_pred cCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc-----
Confidence 4455654 234789999998877777655444 33 221 1 28999999999999999999999
Q ss_pred CCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH------------------HHHHHHHHHHHH
Q 020071 76 REAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA------------------GAQQALRRTMEI 137 (331)
Q Consensus 76 ~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~------------------~~~~~Ll~~le~ 137 (331)
..+++.++-+....-.+++.++.. ..++.||+|+|+|.--. -...-||+.++.
T Consensus 260 ~ydIydLeLt~v~~n~dLr~LL~~---------t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDG 330 (457)
T KOG0743|consen 260 NYDIYDLELTEVKLDSDLRHLLLA---------TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDG 330 (457)
T ss_pred CCceEEeeeccccCcHHHHHHHHh---------CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhcc
Confidence 788888887665444456665543 34577999999986511 113458899986
Q ss_pred hcCCc----EEEEeeCCCCCCChhhhcccc---eeeecCCCHHHHHHHHHHHH
Q 020071 138 YSNST----RFALACNVSSKIIEPIQSRCA---IVRFSRLSDEEILSRLMVVV 183 (331)
Q Consensus 138 ~~~~~----~~I~~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~ 183 (331)
....| ++|||||..++|.|+|.+++. .+.+...+...+........
T Consensus 331 lwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL 383 (457)
T KOG0743|consen 331 LWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYL 383 (457)
T ss_pred ccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhc
Confidence 65544 789999999999999999653 47888888888887777654
No 173
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.51 E-value=8.2e-13 Score=128.25 Aligned_cols=206 Identities=10% Similarity=0.078 Sum_probs=139.7
Q ss_pred CCCCccccCHHHHHHHHHHHHcC--CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHH-HHH
Q 020071 22 TKVCDIVGNLDAVARLGIIARDG--NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRN-KIK 98 (331)
Q Consensus 22 ~~~~~~ig~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~-~i~ 98 (331)
..|++++|.+..+..+.+.++.- ...+++|+|++|+||+++|+++++.... ...+|+.+||.... .+.+.. .+.
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r--~~~pfv~vnc~~~~-~~~~~~elfg 398 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESER--AAGPYIAVNCQLYP-DEALAEEFLG 398 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCc--cCCCeEEEECCCCC-hHHHHHHhcC
Confidence 36999999998888776666542 2223999999999999999999987632 24689999998763 222222 111
Q ss_pred HH---Hh--cccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCcEEEEeeCCC-------CCCC
Q 020071 99 MF---AQ--KKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS-----------NSTRFALACNVS-------SKII 155 (331)
Q Consensus 99 ~~---~~--~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~~~~-------~~l~ 155 (331)
.. .. ....+..+.+.+++|||++.|+...|..|++++++.. .++++|++++.. ..+.
T Consensus 399 ~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~ 478 (638)
T PRK11388 399 SDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFS 478 (638)
T ss_pred CCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCCh
Confidence 00 00 0001113457899999999999999999999998532 256788887652 2334
Q ss_pred hhhhccc--ceeeecCCCHH--HHHHHHHHHHH----hc--CCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHh--hCCCc
Q 020071 156 EPIQSRC--AIVRFSRLSDE--EILSRLMVVVQ----EE--KVPYVPEGLEAIIFTA-DGDMRQALNNLQATY--SGFRF 222 (331)
Q Consensus 156 ~~l~sr~--~~i~~~~~~~~--~~~~~l~~~~~----~~--~~~i~~~~~~~l~~~~-~g~~r~~~~~l~~~~--~~~~~ 222 (331)
+.+-.|. ..+.++|+.+. ++..++...+. +. .+.+++++++.|..+. .||+|++.+.++.++ .....
T Consensus 479 ~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~~~~~ 558 (638)
T PRK11388 479 RQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSSDNGR 558 (638)
T ss_pred HHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCCe
Confidence 4444453 44678888763 45444444333 32 2468999999999988 899999999999865 23446
Q ss_pred cchhhhhh
Q 020071 223 VNQENVFK 230 (331)
Q Consensus 223 i~~~~v~~ 230 (331)
|+.+++-.
T Consensus 559 i~~~~lp~ 566 (638)
T PRK11388 559 IRLSDLPE 566 (638)
T ss_pred ecHHHCch
Confidence 77666543
No 174
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.51 E-value=4.9e-13 Score=121.41 Aligned_cols=185 Identities=24% Similarity=0.300 Sum_probs=115.9
Q ss_pred ccccCHHHHHHHHHHHHc-------C---------CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCC
Q 020071 26 DIVGNLDAVARLGIIARD-------G---------NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRG 89 (331)
Q Consensus 26 ~~ig~~~~~~~l~~~l~~-------~---------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 89 (331)
.++||+++++.+...+.+ + ...++||+||+|+|||++|+.+++.+ +.+++.+++.....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l-----~~pf~~id~~~l~~ 146 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL-----DVPFAIADATTLTE 146 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh-----CCCceecchhhccc
Confidence 389999999988665521 1 12459999999999999999999988 56677666644311
Q ss_pred h----HhHHHHHHHHHh-cccCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHHHh-----c------
Q 020071 90 I----DVVRNKIKMFAQ-KKVTLPPGKHKVVVLDEADSMTA--------------GAQQALRRTMEIY-----S------ 139 (331)
Q Consensus 90 ~----~~i~~~i~~~~~-~~~~~~~~~~~vviide~d~l~~--------------~~~~~Ll~~le~~-----~------ 139 (331)
. ......+..... .........+.+|+|||+|.++. ..|++|+++||.. +
T Consensus 147 ~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~ 226 (412)
T PRK05342 147 AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226 (412)
T ss_pred CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCc
Confidence 0 122223222211 11111134578999999999975 3789999999842 1
Q ss_pred --CCcEEEEeeCC------------------------------CC----------------------CCChhhhcccc-e
Q 020071 140 --NSTRFALACNV------------------------------SS----------------------KIIEPIQSRCA-I 164 (331)
Q Consensus 140 --~~~~~I~~~~~------------------------------~~----------------------~l~~~l~sr~~-~ 164 (331)
..+++|.|+|- .. .+.|.+..|.. +
T Consensus 227 ~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~i 306 (412)
T PRK05342 227 PQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVV 306 (412)
T ss_pred CCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCee
Confidence 01122222211 00 13466667764 4
Q ss_pred eeecCCCHHHHHHHHHH----H-------HHhcC--CCCCHHHHHHHHHhcC---CCHHHHHHHHHH
Q 020071 165 VRFSRLSDEEILSRLMV----V-------VQEEK--VPYVPEGLEAIIFTAD---GDMRQALNNLQA 215 (331)
Q Consensus 165 i~~~~~~~~~~~~~l~~----~-------~~~~~--~~i~~~~~~~l~~~~~---g~~r~~~~~l~~ 215 (331)
+.|.|++.+++.+++.. . +...+ +.++++++++|++.+- .-.|.+...++.
T Consensus 307 v~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~ 373 (412)
T PRK05342 307 ATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEE 373 (412)
T ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHH
Confidence 69999999999998862 2 22334 4579999999998742 234444444443
No 175
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.50 E-value=3.7e-12 Score=103.73 Aligned_cols=189 Identities=18% Similarity=0.171 Sum_probs=134.5
Q ss_pred cCCCCCCccccCHHHHHHHHHHHH---cCCC-CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHH
Q 020071 19 YRPTKVCDIVGNLDAVARLGIIAR---DGNM-PNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVR 94 (331)
Q Consensus 19 ~~p~~~~~~ig~~~~~~~l~~~l~---~~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 94 (331)
+.|..+.+++|.++..+.|.+... +|.. .|+|+||..|+||+++++++..++..+ +...++++..+......+-
T Consensus 54 ~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glrLVEV~k~dl~~Lp~l~ 131 (287)
T COG2607 54 PDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLRLVEVDKEDLATLPDLV 131 (287)
T ss_pred CCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCeEEEEcHHHHhhHHHHH
Confidence 345567789999888887755432 3443 459999999999999999999999766 3448888877664444444
Q ss_pred HHHHHHHhcccCCCCCCceEEEEeCCCCCCH-HHHHHHHHHHH----HhcCCcEEEEeeCCCCCCChhh-----------
Q 020071 95 NKIKMFAQKKVTLPPGKHKVVVLDEADSMTA-GAQQALRRTME----IYSNSTRFALACNVSSKIIEPI----------- 158 (331)
Q Consensus 95 ~~i~~~~~~~~~~~~~~~~vviide~d~l~~-~~~~~Ll~~le----~~~~~~~~I~~~~~~~~l~~~l----------- 158 (331)
+.++ . ...+-|||+|+.-.=.. .+-.+|...|| ..|.++.|..++|....++..+
T Consensus 132 ~~Lr---~------~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih 202 (287)
T COG2607 132 ELLR---A------RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIH 202 (287)
T ss_pred HHHh---c------CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccC
Confidence 4433 2 33477999998754433 34556666665 5678888888888755443222
Q ss_pred -----------hccc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHH-----HHHHHhcCCCHHHHHHHHHHHhh
Q 020071 159 -----------QSRC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGL-----EAIIFTADGDMRQALNNLQATYS 218 (331)
Q Consensus 159 -----------~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-----~~l~~~~~g~~r~~~~~l~~~~~ 218 (331)
..|+ ..+.|.|.+.++...++...+++.++.++++.+ +....+.+-+-|.|.+.++.+++
T Consensus 203 ~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A~QF~~~~~g 279 (287)
T COG2607 203 PSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRSGRVAWQFIRDLAG 279 (287)
T ss_pred hhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCccHhHHHHHHHHHh
Confidence 2343 347999999999999999999999999977544 33334556688999998887764
No 176
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.50 E-value=7e-13 Score=134.73 Aligned_cols=173 Identities=8% Similarity=0.101 Sum_probs=115.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCC---------------------------------------
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRG--------------------------------------- 89 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--------------------------------------- 89 (331)
+|++||||||||.+|+++|... +.+++.+.+++...
T Consensus 1633 ILLiGPPGTGKTlLAKALA~es-----~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~ 1707 (2281)
T CHL00206 1633 ILVIGSIGTGRSYLVKYLATNS-----YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNA 1707 (2281)
T ss_pred eEEECCCCCCHHHHHHHHHHhc-----CCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcch
Confidence 9999999999999999999998 66677665533210
Q ss_pred --------hH--hHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHH-----HHHHHHHHHHHh-----cCCcEEEEeeC
Q 020071 90 --------ID--VVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG-----AQQALRRTMEIY-----SNSTRFALACN 149 (331)
Q Consensus 90 --------~~--~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~-----~~~~Ll~~le~~-----~~~~~~I~~~~ 149 (331)
.. .++...+.+.. ..+.||+|||+|.+... ..+.|+..|+.. ..++++|.+||
T Consensus 1708 ~~~~m~~~e~~~rIr~lFelARk-------~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATN 1780 (2281)
T CHL00206 1708 LTMDMMPKIDRFYITLQFELAKA-------MSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTH 1780 (2281)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHH-------CCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCC
Confidence 00 02222222222 23689999999999753 246677777632 34677888899
Q ss_pred CCCCCChhhhc--cc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHH--HHHHHHHhcCC-CHHHHHHHHHHH---h--h
Q 020071 150 VSSKIIEPIQS--RC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPE--GLEAIIFTADG-DMRQALNNLQAT---Y--S 218 (331)
Q Consensus 150 ~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~--~~~~l~~~~~g-~~r~~~~~l~~~---~--~ 218 (331)
.+..+.|++.+ |+ ..+.++.|+..+..+++.......++.+++. ..+.+++.+.| +.+.+.+++..+ + .
T Consensus 1781 RPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq 1860 (2281)
T CHL00206 1781 IPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQ 1860 (2281)
T ss_pred CcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999998 66 4578888887776666654444445555533 36788888865 444444444433 2 4
Q ss_pred CCCccchhhhhhhcC
Q 020071 219 GFRFVNQENVFKVCD 233 (331)
Q Consensus 219 ~~~~i~~~~v~~~~~ 233 (331)
+...|+.+++..++.
T Consensus 1861 ~ks~Id~~~I~~Al~ 1875 (2281)
T CHL00206 1861 KKSIIDTNTIRSALH 1875 (2281)
T ss_pred CCCccCHHHHHHHHH
Confidence 556788888776544
No 177
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.49 E-value=3.9e-12 Score=110.72 Aligned_cols=177 Identities=15% Similarity=0.132 Sum_probs=118.6
Q ss_pred cCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChH-hHHHH-
Q 020071 19 YRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGID-VVRNK- 96 (331)
Q Consensus 19 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~i~~~- 96 (331)
+.|..-.+++-.+.....+...+..++ +++|.||+|+|||++++.+++.+ +.+++.+++....... .+...
T Consensus 39 ~~p~~d~~y~f~~~~~~~vl~~l~~~~--~ilL~G~pGtGKTtla~~lA~~l-----~~~~~rV~~~~~l~~~DliG~~~ 111 (327)
T TIGR01650 39 HVPDIDPAYLFDKATTKAICAGFAYDR--RVMVQGYHGTGKSTHIEQIAARL-----NWPCVRVNLDSHVSRIDLVGKDA 111 (327)
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhcCC--cEEEEeCCCChHHHHHHHHHHHH-----CCCeEEEEecCCCChhhcCCCce
Confidence 345544567777777777777776544 69999999999999999999999 6777777765432211 11100
Q ss_pred --------HHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHH--------------hcCCcEEEEeeCCC---
Q 020071 97 --------IKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEI--------------YSNSTRFALACNVS--- 151 (331)
Q Consensus 97 --------i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~--------------~~~~~~~I~~~~~~--- 151 (331)
...+...++......+.++++||++..+++.++.|..+||. +++..++|.++|..
T Consensus 112 ~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~G 191 (327)
T TIGR01650 112 IVLKDGKQITEFRDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLG 191 (327)
T ss_pred eeccCCcceeEEecCcchhHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcC
Confidence 01111112111123456899999999999999999999982 34577888888863
Q ss_pred ---------CCCChhhhcccce-eeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhc
Q 020071 152 ---------SKIIEPIQSRCAI-VRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTA 202 (331)
Q Consensus 152 ---------~~l~~~l~sr~~~-i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~ 202 (331)
..++.+..+|+.+ +.+..++.++-.+++...+....-..++..++++++..
T Consensus 192 d~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la 252 (327)
T TIGR01650 192 DTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVA 252 (327)
T ss_pred CCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence 2578999999975 58999999999999877542211011345566665543
No 178
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.49 E-value=2.1e-12 Score=114.20 Aligned_cols=209 Identities=17% Similarity=0.161 Sum_probs=129.7
Q ss_pred CCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhc-------CCCC---CCc--------------
Q 020071 23 KVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL-------GPNY---REA-------------- 78 (331)
Q Consensus 23 ~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~-------~~~~---~~~-------------- 78 (331)
.|..++||++++..+.-.+-.....|++|.|++|+|||++++.++..+. |+.. ..+
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 81 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQ 81 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcc
Confidence 4788999999999887766666666899999999999999999998772 1100 000
Q ss_pred -----------eEEeec--C--CCCChHhHHHHHHHHHh--cccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc--
Q 020071 79 -----------VMELNA--S--DDRGIDVVRNKIKMFAQ--KKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS-- 139 (331)
Q Consensus 79 -----------~~~~~~--~--~~~~~~~i~~~i~~~~~--~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~-- 139 (331)
++.+-. . ...|.-.+...++.-.. .+..+...++.++++||++.++...|..|++.|++..
T Consensus 82 ~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~ 161 (337)
T TIGR02030 82 EPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGWNV 161 (337)
T ss_pred cccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhCCeE
Confidence 011000 0 11111122222211100 1111113557899999999999999999999998631
Q ss_pred -----------CCcEEEEeeCCC-CCCChhhhcccce-eeecCCCH-HHHHHHHHHHHH---------------------
Q 020071 140 -----------NSTRFALACNVS-SKIIEPIQSRCAI-VRFSRLSD-EEILSRLMVVVQ--------------------- 184 (331)
Q Consensus 140 -----------~~~~~I~~~~~~-~~l~~~l~sr~~~-i~~~~~~~-~~~~~~l~~~~~--------------------- 184 (331)
..+.+|.+.|.. ..+.+.+.+|+.. +.+.+++. ++..+++.....
T Consensus 162 v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~ 241 (337)
T TIGR02030 162 VEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQA 241 (337)
T ss_pred EEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHH
Confidence 223333334433 3688999999864 46666655 554555544211
Q ss_pred --------hcCCCCCHHHHHHHHHhc---CC-CHHHHHHHHHHH-----hhCCCccchhhhhhh
Q 020071 185 --------EEKVPYVPEGLEAIIFTA---DG-DMRQALNNLQAT-----YSGFRFVNQENVFKV 231 (331)
Q Consensus 185 --------~~~~~i~~~~~~~l~~~~---~g-~~r~~~~~l~~~-----~~~~~~i~~~~v~~~ 231 (331)
-..+.++++.+++++..+ +. .+|..+..+..+ ..+...++.+||..+
T Consensus 242 ~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~ 305 (337)
T TIGR02030 242 KIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRV 305 (337)
T ss_pred HHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 134568888888777643 33 467777776543 257778999988764
No 179
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=99.49 E-value=3.2e-13 Score=131.29 Aligned_cols=197 Identities=30% Similarity=0.395 Sum_probs=155.1
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcC------------C--CCe--EEEeCCCCccHHHHHHHHHHHhcCCCCC
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDG------------N--MPN--LILAGPPGTGKTTSILALAHELLGPNYR 76 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~------------~--~~~--~ll~G~~G~GKt~la~~l~~~l~~~~~~ 76 (331)
.-|.++|+|....++.|.......+.+++... . ... ++++||+|+|||+.+...++.+ +
T Consensus 308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~-----g 382 (871)
T KOG1968|consen 308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKEL-----G 382 (871)
T ss_pred cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhc-----c
Confidence 45999999999999999888777777777653 1 112 4999999999999999999999 8
Q ss_pred CceEEeecCCCCChHhHHHHHHHHHhcccC-----------CCCCCceEEEEeCCCCCCHHH---HHHHHHHHHHhcCCc
Q 020071 77 EAVMELNASDDRGIDVVRNKIKMFAQKKVT-----------LPPGKHKVVVLDEADSMTAGA---QQALRRTMEIYSNST 142 (331)
Q Consensus 77 ~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~-----------~~~~~~~vviide~d~l~~~~---~~~Ll~~le~~~~~~ 142 (331)
..+++.|+++.++...+.+.+..+...... ...+...||++||+|.+..+. ..++-.+.. ....
T Consensus 383 ~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~--ks~~ 460 (871)
T KOG1968|consen 383 FKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCK--KSSR 460 (871)
T ss_pred cceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHHHHHH--hccC
Confidence 899999999887665555555433322110 001234599999999998733 445555555 3567
Q ss_pred EEEEeeCCCCCCCh-hhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 020071 143 RFALACNVSSKIIE-PIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT 216 (331)
Q Consensus 143 ~~I~~~~~~~~l~~-~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~ 216 (331)
.+|++||+..-... ++.+-|..++|..|+...+..++..++..+++.++++.++.+++.++||+|.+++.++.+
T Consensus 461 Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 461 PLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIMQLQFW 535 (871)
T ss_pred CeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHHHHhhh
Confidence 78999998765543 555557899999999999999999999999999999999999999999999999999877
No 180
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=4.5e-13 Score=116.77 Aligned_cols=155 Identities=20% Similarity=0.275 Sum_probs=113.0
Q ss_pred CCC-CCCccccCHHHHHHHHHHHHc--------CCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC--
Q 020071 20 RPT-KVCDIVGNLDAVARLGIIARD--------GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR-- 88 (331)
Q Consensus 20 ~p~-~~~~~ig~~~~~~~l~~~l~~--------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~-- 88 (331)
+++ .|+++|-++....++...... +-+.+++||||||+|||.+|+.+++.. +.+|....+.+..
T Consensus 349 ~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S-----GlDYA~mTGGDVAPl 423 (630)
T KOG0742|consen 349 RGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS-----GLDYAIMTGGDVAPL 423 (630)
T ss_pred cCCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc-----CCceehhcCCCcccc
Confidence 344 389999999998888776532 223359999999999999999999987 7777777766542
Q ss_pred ---ChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCC---------CHHHHHHHHHHH---HHhcCCcEEEEeeCCCCC
Q 020071 89 ---GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM---------TAGAQQALRRTM---EIYSNSTRFALACNVSSK 153 (331)
Q Consensus 89 ---~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l---------~~~~~~~Ll~~l---e~~~~~~~~I~~~~~~~~ 153 (331)
++..|.++++.... +.++-++||||+|.+ +.....+|..+| -+.+.+.++++++|.+..
T Consensus 424 G~qaVTkiH~lFDWakk------S~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgd 497 (630)
T KOG0742|consen 424 GAQAVTKIHKLFDWAKK------SRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGD 497 (630)
T ss_pred chHHHHHHHHHHHHHhh------cccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccc
Confidence 23344444443332 345779999999855 333333443333 345567889999999999
Q ss_pred CChhhhccc-ceeeecCCCHHHHHHHHHHHHHh
Q 020071 154 IIEPIQSRC-AIVRFSRLSDEEILSRLMVVVQE 185 (331)
Q Consensus 154 l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~ 185 (331)
+..++-.|. .+++|+-|..+|...+|..++.+
T Consensus 498 lDsAV~DRide~veFpLPGeEERfkll~lYlnk 530 (630)
T KOG0742|consen 498 LDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNK 530 (630)
T ss_pred hhHHHHhhhhheeecCCCChHHHHHHHHHHHHH
Confidence 999999997 67899999999988888777654
No 181
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=8.4e-13 Score=122.36 Aligned_cols=180 Identities=20% Similarity=0.318 Sum_probs=123.5
Q ss_pred ccccCHHHHHHHHHHHHcCC----C--CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHH----
Q 020071 26 DIVGNLDAVARLGIIARDGN----M--PNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRN---- 95 (331)
Q Consensus 26 ~~ig~~~~~~~l~~~l~~~~----~--~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~---- 95 (331)
|=.|-+++++++..++.=++ . +-++|+||||+|||++++.+|+.+ +..|+.+.-.......+|+.
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL-----nRkFfRfSvGG~tDvAeIkGHRRT 486 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL-----NRKFFRFSVGGMTDVAEIKGHRRT 486 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh-----CCceEEEeccccccHHhhccccee
Confidence 45688888888888765332 2 227999999999999999999999 55566665443322222221
Q ss_pred --------HHHHHHhcccCCCCCCceEEEEeCCCCCCH----HHHHHHHHHHHH------------hc---CCcEEEEee
Q 020071 96 --------KIKMFAQKKVTLPPGKHKVVVLDEADSMTA----GAQQALRRTMEI------------YS---NSTRFALAC 148 (331)
Q Consensus 96 --------~i~~~~~~~~~~~~~~~~vviide~d~l~~----~~~~~Ll~~le~------------~~---~~~~~I~~~ 148 (331)
+++..... .....+++|||+|++.. +...+|+++|+- .| ..+.||+++
T Consensus 487 YVGAMPGkiIq~LK~v-----~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTA 561 (906)
T KOG2004|consen 487 YVGAMPGKIIQCLKKV-----KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTA 561 (906)
T ss_pred eeccCChHHHHHHHhh-----CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEec
Confidence 22222221 23467999999999963 446788887761 11 466799999
Q ss_pred CCCCCCChhhhcccceeeecCCCHHHHHHHHHHHH-----Hh-----cCCCCCHHHHHHHHHhc--CCCHHHHHHHHHH
Q 020071 149 NVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV-----QE-----EKVPYVPEGLEAIIFTA--DGDMRQALNNLQA 215 (331)
Q Consensus 149 ~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~-----~~-----~~~~i~~~~~~~l~~~~--~g~~r~~~~~l~~ 215 (331)
|....++++|+.|..+|++..+..+|-..+.++.+ +. +.+.++++++..|+++. +.-.|.+...+++
T Consensus 562 N~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iek 640 (906)
T KOG2004|consen 562 NVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEK 640 (906)
T ss_pred cccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999988776655543 22 34678888887777543 2234555444443
No 182
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.49 E-value=4.2e-12 Score=117.71 Aligned_cols=190 Identities=18% Similarity=0.240 Sum_probs=135.3
Q ss_pred cccCHHHHHHHHHHHHcC----CCC-eEEEeCCCCccHHHHHHHHHHHhc-----CCCCCCceEEeecCCCCChHhHHHH
Q 020071 27 IVGNLDAVARLGIIARDG----NMP-NLILAGPPGTGKTTSILALAHELL-----GPNYREAVMELNASDDRGIDVVRNK 96 (331)
Q Consensus 27 ~ig~~~~~~~l~~~l~~~----~~~-~~ll~G~~G~GKt~la~~l~~~l~-----~~~~~~~~~~~~~~~~~~~~~i~~~ 96 (331)
+-+++.....+..++... ... -+++.|-||+|||.+++.+.+.+. .+-..+.|+++|+....+..++.+.
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~ 477 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEK 477 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHH
Confidence 456666666666665542 222 389999999999999999999775 2345678999998877666555544
Q ss_pred HHHHHh--------------cccC--CCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc---CCcEEEEeeCCC---CC-
Q 020071 97 IKMFAQ--------------KKVT--LPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS---NSTRFALACNVS---SK- 153 (331)
Q Consensus 97 i~~~~~--------------~~~~--~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~---~~~~~I~~~~~~---~~- 153 (331)
|-.... ..+. .+.....||+|||.|.|-...|..|..+++.|. ...++|.++|.. ++
T Consensus 478 I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~ 557 (767)
T KOG1514|consen 478 IWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERL 557 (767)
T ss_pred HHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHH
Confidence 411111 1111 113456799999999999889999999999765 355566666653 23
Q ss_pred CChhhhcc--cceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh---cCCCHHHHHHHHHHHh
Q 020071 154 IIEPIQSR--CAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFT---ADGDMRQALNNLQATY 217 (331)
Q Consensus 154 l~~~l~sr--~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~---~~g~~r~~~~~l~~~~ 217 (331)
+...+-|| +..+.|.|++..++.+++..+++.. ..++..+++.+++. ..||.|+++.+++.++
T Consensus 558 l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 558 LMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred hccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 33456666 4679999999999999999887654 35788888887765 3699999999998764
No 183
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.48 E-value=1.3e-12 Score=128.39 Aligned_cols=175 Identities=19% Similarity=0.223 Sum_probs=123.6
Q ss_pred CCCCCCccccCHHHHHHHHHHHHc-----------C-CC-CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCC
Q 020071 20 RPTKVCDIVGNLDAVARLGIIARD-----------G-NM-PNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASD 86 (331)
Q Consensus 20 ~p~~~~~~ig~~~~~~~l~~~l~~-----------~-~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (331)
...+|+++.|.+..++.+.+.+.. | .. .+++||||+|+|||++++++++.+ +.+++.+++.+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~-----~~~~i~i~~~~ 247 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA-----GAYFISINGPE 247 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh-----CCeEEEEecHH
Confidence 345899999999999998887642 1 12 238999999999999999999988 56677777653
Q ss_pred CC----C--hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHHHhc--CCcEEEEe
Q 020071 87 DR----G--IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA-----------GAQQALRRTMEIYS--NSTRFALA 147 (331)
Q Consensus 87 ~~----~--~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~-----------~~~~~Ll~~le~~~--~~~~~I~~ 147 (331)
.. + ...++..+..+. ...+.+++|||+|.+.. ..++.|+..++... ..+.+|.+
T Consensus 248 i~~~~~g~~~~~l~~lf~~a~-------~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~a 320 (733)
T TIGR01243 248 IMSKYYGESEERLREIFKEAE-------ENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGA 320 (733)
T ss_pred HhcccccHHHHHHHHHHHHHH-------hcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEee
Confidence 21 1 123344443332 23357999999988742 34677888887543 34566668
Q ss_pred eCCCCCCChhhhc--cc-ceeeecCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHhcCCCHHH
Q 020071 148 CNVSSKIIEPIQS--RC-AIVRFSRLSDEEILSRLMVVVQEEKVPYV-PEGLEAIIFTADGDMRQ 208 (331)
Q Consensus 148 ~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~-~~~~~~l~~~~~g~~r~ 208 (331)
+|.+..+.+.+++ |+ ..+.+.+|+.++..++++..... ..+. +..++.+++.+.|-.+.
T Consensus 321 tn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~--~~l~~d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 321 TNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN--MPLAEDVDLDKLAEVTHGFVGA 383 (733)
T ss_pred cCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC--CCCccccCHHHHHHhCCCCCHH
Confidence 8888999999887 55 45789999999999999865443 3333 34578888888775433
No 184
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.48 E-value=1.5e-12 Score=102.17 Aligned_cols=138 Identities=33% Similarity=0.345 Sum_probs=96.3
Q ss_pred ccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHH----HHHhc
Q 020071 28 VGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIK----MFAQK 103 (331)
Q Consensus 28 ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~----~~~~~ 103 (331)
.|++..+..+...+......+++++||+|+|||++++.+++.+... +..++.+++.............. .....
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHFLVRLLFE 78 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhhhHhHHHH
Confidence 3677888888888877555579999999999999999999988532 34566666554422222221111 00000
Q ss_pred ccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh------cCCcEEEEeeCCCC--CCChhhhccc-ceeeecC
Q 020071 104 KVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY------SNSTRFALACNVSS--KIIEPIQSRC-AIVRFSR 169 (331)
Q Consensus 104 ~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~------~~~~~~I~~~~~~~--~l~~~l~sr~-~~i~~~~ 169 (331)
. ....+..++++||++.+.....+.+...++.. +..+.+|++++... .+.+.+.+|+ ..+.++|
T Consensus 79 ~--~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 79 L--AEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred h--hccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecCC
Confidence 0 01345789999999999888888888888865 35788888888776 7888999998 5566543
No 185
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=4.5e-13 Score=112.28 Aligned_cols=177 Identities=19% Similarity=0.233 Sum_probs=115.2
Q ss_pred CCC-CCCccccCHHHHHHHHHHHH----------cCCCCe--EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCC
Q 020071 20 RPT-KVCDIVGNLDAVARLGIIAR----------DGNMPN--LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASD 86 (331)
Q Consensus 20 ~p~-~~~~~ig~~~~~~~l~~~l~----------~~~~~~--~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (331)
+|. .|+|+.|.+.+++.|+..+- .++.|- +|||||||+||+.+|++++.+. +..|+.+..++
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA-----nSTFFSvSSSD 201 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA-----NSTFFSVSSSD 201 (439)
T ss_pred CCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc-----CCceEEeehHH
Confidence 355 79999999999999988742 334332 8999999999999999999988 55677777766
Q ss_pred CCCh--HhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH----HH-------HHHHHHHHHH---hcCCcEEEEeeCC
Q 020071 87 DRGI--DVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA----GA-------QQALRRTMEI---YSNSTRFALACNV 150 (331)
Q Consensus 87 ~~~~--~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~----~~-------~~~Ll~~le~---~~~~~~~I~~~~~ 150 (331)
..+. ..-..+++...+..- ...+.+|||||+|.+.. .. ...|+--|+. -...+.++.+||-
T Consensus 202 LvSKWmGESEkLVknLFemAR---e~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNi 278 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMAR---ENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNI 278 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHH---hcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCC
Confidence 5221 122223333333222 44578999999998842 11 2233333432 2244555666777
Q ss_pred CCCCChhhhcccceeeecCCCHHHHHH-HHHHHHHhcCCCCCHHHHHHHHHhcCC
Q 020071 151 SSKIIEPIQSRCAIVRFSRLSDEEILS-RLMVVVQEEKVPYVPEGLEAIIFTADG 204 (331)
Q Consensus 151 ~~~l~~~l~sr~~~i~~~~~~~~~~~~-~l~~~~~~~~~~i~~~~~~~l~~~~~g 204 (331)
+..+..+|++|+..--+-|+++...+. .++-.+..-...+++...+.|++.+.|
T Consensus 279 Pw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeG 333 (439)
T KOG0739|consen 279 PWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEG 333 (439)
T ss_pred chhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCC
Confidence 889999999998654344555444433 333333333445788889999998866
No 186
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=9.4e-13 Score=113.72 Aligned_cols=184 Identities=22% Similarity=0.202 Sum_probs=123.4
Q ss_pred CCCccccCHHHHHHHHHHHH----------cCC---CC-eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC
Q 020071 23 KVCDIVGNLDAVARLGIIAR----------DGN---MP-NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR 88 (331)
Q Consensus 23 ~~~~~ig~~~~~~~l~~~l~----------~~~---~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (331)
+|+|+-|-+..++.++..+- .++ .+ .+|+|||||||||.+|++++++. +.+|+.+..+...
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea-----ga~fInv~~s~lt 164 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA-----GANFINVSVSNLT 164 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc-----CCCcceeeccccc
Confidence 68899999999998877753 221 22 38999999999999999999998 7778877776553
Q ss_pred ChH--hHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHH----HHHHHH----HHHH-------HhcCCcEEEEeeCCC
Q 020071 89 GID--VVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG----AQQALR----RTME-------IYSNSTRFALACNVS 151 (331)
Q Consensus 89 ~~~--~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~----~~~~Ll----~~le-------~~~~~~~~I~~~~~~ 151 (331)
+.- .-...++.....+. .-.+.+++|||+|.+... ..++.. ++|- +....+.++.+||.+
T Consensus 165 ~KWfgE~eKlv~AvFslAs---Kl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP 241 (386)
T KOG0737|consen 165 SKWFGEAQKLVKAVFSLAS---KLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRP 241 (386)
T ss_pred hhhHHHHHHHHHHHHhhhh---hcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCC
Confidence 311 11122222222221 224779999999877421 111111 1111 222344555668889
Q ss_pred CCCChhhhcc-cceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHH
Q 020071 152 SKIIEPIQSR-CAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG-DMRQALNNLQA 215 (331)
Q Consensus 152 ~~l~~~l~sr-~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~~~~~l~~ 215 (331)
..+..++.+| +..+++.-|+..+..++|+-+.+.+.+. ++-.+..+++.+.| +-..+.+.+..
T Consensus 242 ~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~~ 306 (386)
T KOG0737|consen 242 FDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCRL 306 (386)
T ss_pred ccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHHH
Confidence 9999999999 5778999999999999999998888764 44457888988876 44444455443
No 187
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.47 E-value=5.8e-12 Score=114.65 Aligned_cols=201 Identities=14% Similarity=0.124 Sum_probs=122.2
Q ss_pred CccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEee---cCCCCChHhHHHHH--HH
Q 020071 25 CDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELN---ASDDRGIDVVRNKI--KM 99 (331)
Q Consensus 25 ~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~---~~~~~~~~~i~~~i--~~ 99 (331)
..++|++++++.+...+..+. |++|+||||+|||++|+.+++...... .+.+..+. +.+..|...+.... ..
T Consensus 20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~fttp~DLfG~l~i~~~~~~g~ 96 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTRFSTPEEVFGPLSIQALKDEGR 96 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcccC-cceeeeeeecCcHHhcCcHHHhhhhhcCc
Confidence 358999999999988887776 799999999999999999999864321 11122221 11111211112211 01
Q ss_pred HHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc---------CCcEEEEeeCC-CC---CCChhhhcccce-e
Q 020071 100 FAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS---------NSTRFALACNV-SS---KIIEPIQSRCAI-V 165 (331)
Q Consensus 100 ~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~---------~~~~~I~~~~~-~~---~l~~~l~sr~~~-i 165 (331)
+...... +.....++++||++++++..+++|+..|++.. -..+|++++++ .. ...+++..|+.+ +
T Consensus 97 f~r~~~G-~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~DRFliri 175 (498)
T PRK13531 97 YQRLTSG-YLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYDRMLIRL 175 (498)
T ss_pred hhhhcCC-ccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHhhEEEEE
Confidence 1000000 01123499999999999999999999997522 23456555543 11 233588889843 5
Q ss_pred eecCCC-HHHHHHHHHHHHH-----------------------hcCCCCCHHHHHHHHHhc------C----CCHHHHHH
Q 020071 166 RFSRLS-DEEILSRLMVVVQ-----------------------EEKVPYVPEGLEAIIFTA------D----GDMRQALN 211 (331)
Q Consensus 166 ~~~~~~-~~~~~~~l~~~~~-----------------------~~~~~i~~~~~~~l~~~~------~----g~~r~~~~ 211 (331)
.++|++ .++..+++..... -..+.+++...+++.+.. . -++|..+.
T Consensus 176 ~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~ 255 (498)
T PRK13531 176 WLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKK 255 (498)
T ss_pred ECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHH
Confidence 777886 4555666654211 123556777777766543 1 35676666
Q ss_pred HHHHH-----hhCCCccchhhhh
Q 020071 212 NLQAT-----YSGFRFVNQENVF 229 (331)
Q Consensus 212 ~l~~~-----~~~~~~i~~~~v~ 229 (331)
.+..+ ..++..++.+|+.
T Consensus 256 l~~~akA~A~l~GR~~V~p~Dv~ 278 (498)
T PRK13531 256 AIRLLQASAFFSGRDAIAPIDLI 278 (498)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHH
Confidence 55432 2677788888886
No 188
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.47 E-value=4.6e-12 Score=119.43 Aligned_cols=192 Identities=15% Similarity=0.151 Sum_probs=134.3
Q ss_pred CCCccccCHHHHHHHHHHHHcCC--CCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHH
Q 020071 23 KVCDIVGNLDAVARLGIIARDGN--MPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMF 100 (331)
Q Consensus 23 ~~~~~ig~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 100 (331)
.+.+++|++..++.+.+.+..-. ..+|+|+|++||||+.+|++++..... ...+++.+||..... +.+...+-..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r--~~~p~v~v~c~~~~~-~~~e~~lfG~ 261 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR--ADKPLVYLNCAALPE-SLAESELFGH 261 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCc--CCCCeEEEEcccCCh-HHHHHHhcCc
Confidence 57789999999988888776632 223999999999999999999997532 256899999986532 2222211000
Q ss_pred Hhcc---------cCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCcEEEEeeCCC-------CC
Q 020071 101 AQKK---------VTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS-----------NSTRFALACNVS-------SK 153 (331)
Q Consensus 101 ~~~~---------~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~~~~-------~~ 153 (331)
.... ..+..+..++++|||++.|+.+.|..|++++++.. .++++|++++.. ..
T Consensus 262 ~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~ 341 (509)
T PRK05022 262 VKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGR 341 (509)
T ss_pred cccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCC
Confidence 0000 01113457889999999999999999999998532 367899988753 34
Q ss_pred CChhhhcccc--eeeecCCCH--HHHHHHH----HHHHHhc---CCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHh
Q 020071 154 IIEPIQSRCA--IVRFSRLSD--EEILSRL----MVVVQEE---KVPYVPEGLEAIIFTA-DGDMRQALNNLQATY 217 (331)
Q Consensus 154 l~~~l~sr~~--~i~~~~~~~--~~~~~~l----~~~~~~~---~~~i~~~~~~~l~~~~-~g~~r~~~~~l~~~~ 217 (331)
+.+.+-.|.. .+.++|+.+ +++..++ .+.+.+. ...+++++++.|..+. .||+|++.+.++.++
T Consensus 342 f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~ 417 (509)
T PRK05022 342 FRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAA 417 (509)
T ss_pred ccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 5566666643 467777776 3444433 3333333 3578999999999876 799999999998765
No 189
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.3e-12 Score=107.54 Aligned_cols=172 Identities=20% Similarity=0.279 Sum_probs=117.9
Q ss_pred CCC-CCCccccCHHHHHHHHHHHH-----------cC-CCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecC
Q 020071 20 RPT-KVCDIVGNLDAVARLGIIAR-----------DG-NMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNAS 85 (331)
Q Consensus 20 ~p~-~~~~~ig~~~~~~~l~~~l~-----------~~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 85 (331)
+|. ++.|+-|-+..++.|..++- -| +.|. +|+|||||+|||.+|++++... ...|..+.++
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT-----~aTFLKLAgP 239 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT-----NATFLKLAGP 239 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc-----cchHHHhcch
Confidence 454 67788899999998877652 12 2233 9999999999999999999987 3344444333
Q ss_pred CC------CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHHH-----hcCCcE
Q 020071 86 DD------RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT-----------AGAQQALRRTMEI-----YSNSTR 143 (331)
Q Consensus 86 ~~------~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~-----------~~~~~~Ll~~le~-----~~~~~~ 143 (331)
.. .|...+++.+.-+. +..+.+|||||+|.+. .+.|..++.++.. +...+.
T Consensus 240 QLVQMfIGdGAkLVRDAFaLAK-------EkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vK 312 (424)
T KOG0652|consen 240 QLVQMFIGDGAKLVRDAFALAK-------EKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVK 312 (424)
T ss_pred HHHhhhhcchHHHHHHHHHHhh-------ccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceE
Confidence 21 23334444443333 3346799999998774 2456666666552 345778
Q ss_pred EEEeeCCCCCCChhhhccc---ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Q 020071 144 FALACNVSSKIIEPIQSRC---AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG 204 (331)
Q Consensus 144 ~I~~~~~~~~l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g 204 (331)
+|.++|...-+.|++.+.+ ..++|+.|+++...++++-..++-++. ++-..+.|++.+.+
T Consensus 313 viAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~DvNfeELaRsTdd 375 (424)
T KOG0652|consen 313 VIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-DDVNFEELARSTDD 375 (424)
T ss_pred EEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-CCCCHHHHhhcccc
Confidence 8999999999999887654 458999998888888887776666543 33346778877653
No 190
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.47 E-value=1.9e-12 Score=115.95 Aligned_cols=202 Identities=16% Similarity=0.159 Sum_probs=137.5
Q ss_pred CCCccccCHHHHHHHHHHHHcCCC--CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHH
Q 020071 23 KVCDIVGNLDAVARLGIIARDGNM--PNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMF 100 (331)
Q Consensus 23 ~~~~~ig~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 100 (331)
.+.+|||++.++..+.+.++--.. ..||+.|++||||..+|+++++.-... ..+++.+||... .......-+-..
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~--~kPfV~~NCAAl-PesLlESELFGH 297 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRR--DKPFVKLNCAAL-PESLLESELFGH 297 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCccc--CCCceeeecccc-chHHHHHHHhcc
Confidence 567899999999988888765322 239999999999999999999976443 668999999865 212222222111
Q ss_pred HhcccC---------CCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh-----------cCCcEEEEeeCCC-------CC
Q 020071 101 AQKKVT---------LPPGKHKVVVLDEADSMTAGAQQALRRTMEIY-----------SNSTRFALACNVS-------SK 153 (331)
Q Consensus 101 ~~~~~~---------~~~~~~~vviide~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~~~~-------~~ 153 (331)
....|+ +..++++.+|+||+..|+...|.+|++.+++. .-++++|.+||.. .+
T Consensus 298 eKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V~~G~ 377 (550)
T COG3604 298 EKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMVRDGE 377 (550)
T ss_pred cccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHHHcCc
Confidence 122221 22357889999999999999999999999853 2467899998862 23
Q ss_pred CChhhhccccee--eecCCCH-----HHHH-HHHHHHHHhcC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHhh-CC
Q 020071 154 IIEPIQSRCAIV--RFSRLSD-----EEIL-SRLMVVVQEEK---VPYVPEGLEAIIFTA-DGDMRQALNNLQATYS-GF 220 (331)
Q Consensus 154 l~~~l~sr~~~i--~~~~~~~-----~~~~-~~l~~~~~~~~---~~i~~~~~~~l~~~~-~g~~r~~~~~l~~~~~-~~ 220 (331)
+-..+--|..++ .++|+.+ ..+. .++++...+.| ..+++++.+.|.++. .||+|.+.|.++.++. .+
T Consensus 378 FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla~ 457 (550)
T COG3604 378 FRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVLLAG 457 (550)
T ss_pred chhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHhc
Confidence 444444555443 4455543 2233 33444444444 468999999998875 7999999999987652 23
Q ss_pred Cccchhh
Q 020071 221 RFVNQEN 227 (331)
Q Consensus 221 ~~i~~~~ 227 (331)
..++..+
T Consensus 458 ~~~~~~d 464 (550)
T COG3604 458 RLTRRGD 464 (550)
T ss_pred ccCCCcc
Confidence 3444333
No 191
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.46 E-value=2e-12 Score=116.77 Aligned_cols=185 Identities=22% Similarity=0.262 Sum_probs=117.3
Q ss_pred ccccCHHHHHHHHHHHH-------c---CC--------CCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC
Q 020071 26 DIVGNLDAVARLGIIAR-------D---GN--------MPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD 87 (331)
Q Consensus 26 ~~ig~~~~~~~l~~~l~-------~---~~--------~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (331)
.++||+++++.+...+. . .. ..++||+||+|+|||++|+.+++.+ +.++..+++...
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l-----~~pf~~~da~~L 152 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL-----NVPFAIADATTL 152 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc-----CCCeEEechhhc
Confidence 37999999998876652 1 11 1359999999999999999999988 556666555432
Q ss_pred CC----hHhHHHHHHHHHh-cccCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHHHhc---------
Q 020071 88 RG----IDVVRNKIKMFAQ-KKVTLPPGKHKVVVLDEADSMTA--------------GAQQALRRTMEIYS--------- 139 (331)
Q Consensus 88 ~~----~~~i~~~i~~~~~-~~~~~~~~~~~vviide~d~l~~--------------~~~~~Ll~~le~~~--------- 139 (331)
.. .......+..... .+.......+.+|+|||+|+++. ..|++|+++||...
T Consensus 153 ~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr 232 (413)
T TIGR00382 153 TEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGR 232 (413)
T ss_pred cccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCc
Confidence 11 0112233322221 11111134567999999999976 58999999997321
Q ss_pred ----CCcEEEEeeCCC---------------------------C-----------------------CCChhhhcccc-e
Q 020071 140 ----NSTRFALACNVS---------------------------S-----------------------KIIEPIQSRCA-I 164 (331)
Q Consensus 140 ----~~~~~I~~~~~~---------------------------~-----------------------~l~~~l~sr~~-~ 164 (331)
.++++|.|+|-. . .+.|.+..|.. +
T Consensus 233 ~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~I 312 (413)
T TIGR00382 233 KHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVI 312 (413)
T ss_pred cccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeE
Confidence 233445554320 0 13466777774 4
Q ss_pred eeecCCCHHHHHHHHHHH----HH-------hcC--CCCCHHHHHHHHHhcC---CCHHHHHHHHHH
Q 020071 165 VRFSRLSDEEILSRLMVV----VQ-------EEK--VPYVPEGLEAIIFTAD---GDMRQALNNLQA 215 (331)
Q Consensus 165 i~~~~~~~~~~~~~l~~~----~~-------~~~--~~i~~~~~~~l~~~~~---g~~r~~~~~l~~ 215 (331)
+.|.|++.+++.+++... .+ ..+ +.++++++++|++.+- --.|.+...++.
T Consensus 313 v~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~ 379 (413)
T TIGR00382 313 ATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEG 379 (413)
T ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHH
Confidence 689999999999988652 22 123 4568999999998742 234555555544
No 192
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.45 E-value=8.1e-12 Score=120.35 Aligned_cols=209 Identities=17% Similarity=0.111 Sum_probs=134.2
Q ss_pred CCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhc-----------CCCC----------------
Q 020071 23 KVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL-----------GPNY---------------- 75 (331)
Q Consensus 23 ~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~-----------~~~~---------------- 75 (331)
.|.+|+||++++..+...+......++||+|++|+|||++|+.+++.+. |...
T Consensus 2 pf~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~ 81 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPS 81 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhccccc
Confidence 3779999999999998888887777799999999999999999999882 2110
Q ss_pred ---CCceEEeecCCC----CChHhHHHHHHHHH--hcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh--------
Q 020071 76 ---REAVMELNASDD----RGIDVVRNKIKMFA--QKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY-------- 138 (331)
Q Consensus 76 ---~~~~~~~~~~~~----~~~~~i~~~i~~~~--~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~-------- 138 (331)
..+|+.+.+... .|...+...+..-. ..+..+....+.+++|||++.++...++.|+..|++.
T Consensus 82 ~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g 161 (633)
T TIGR02442 82 EQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREG 161 (633)
T ss_pred ccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECC
Confidence 234554433321 11111222221100 0111111346789999999999999999999999853
Q ss_pred -----cCCcEEEEeeCCC-CCCChhhhcccce-eeecCCC-HHHHHHHHHHHH---------------------------
Q 020071 139 -----SNSTRFALACNVS-SKIIEPIQSRCAI-VRFSRLS-DEEILSRLMVVV--------------------------- 183 (331)
Q Consensus 139 -----~~~~~~I~~~~~~-~~l~~~l~sr~~~-i~~~~~~-~~~~~~~l~~~~--------------------------- 183 (331)
+.++.+|.++|.. ..+.+.+.+|+.. +.+.++. .++..+++....
T Consensus 162 ~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~a 241 (633)
T TIGR02442 162 LSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARA 241 (633)
T ss_pred ceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHH
Confidence 2346677766643 4678899999853 4555443 333333332211
Q ss_pred --HhcCCCCCHHHHHHHHHhc---CC-CHHHHHHHHHHH-----hhCCCccchhhhhhh
Q 020071 184 --QEEKVPYVPEGLEAIIFTA---DG-DMRQALNNLQAT-----YSGFRFVNQENVFKV 231 (331)
Q Consensus 184 --~~~~~~i~~~~~~~l~~~~---~g-~~r~~~~~l~~~-----~~~~~~i~~~~v~~~ 231 (331)
....+.++++.+++++..+ +- .+|..+..++.+ ..+...++.+++.++
T Consensus 242 r~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A 300 (633)
T TIGR02442 242 RSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREA 300 (633)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHH
Confidence 0124678888888888765 22 466666666533 257778999998663
No 193
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=99.44 E-value=4.3e-13 Score=108.56 Aligned_cols=162 Identities=13% Similarity=0.197 Sum_probs=117.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCC-CCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCC----CCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPN-YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA----DSM 123 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~----d~l 123 (331)
.+|||+.-.-+...++.+.+.+.... ...++..++..+. ...+.+..+.+.++ ++++++|+|.++ +..
T Consensus 1 Yll~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~s~sl---F~~~klvii~~~~~l~~~~ 73 (172)
T PF06144_consen 1 YLLYGEDSFLIEEYIKKIRKALIKKDFDDFNVIVFDGSED----DIDELLEELQSPSL---FGDKKLVIIKNAPFLKDKL 73 (172)
T ss_dssp EEEEES-HHHHHHHHHHHHHHHHTTTEEEEEEEE-STTS-----HHH-HTTTSTTTTS---SSSEEEEEEE-----TT-S
T ss_pred CEEEeCcHHHHHHHHHHHHHHhhcCCCccceEEEEccccC----cHHHHHHHHhcCCc---cCCCeEEEEecCccccccc
Confidence 47999998888888899888854332 2234444444433 33345555566665 889999999999 556
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeeC-CC---CCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 020071 124 TAGAQQALRRTMEIYSNSTRFALACN-VS---SKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAII 199 (331)
Q Consensus 124 ~~~~~~~Ll~~le~~~~~~~~I~~~~-~~---~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~ 199 (331)
..+..+.|.+++++|++++.+|+.++ .. .++.+.+.+.+.++.|.+++..++..|++.++++.|+.++++++++|+
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~ 153 (172)
T PF06144_consen 74 KKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERAKKNGLKIDPDAAQYLI 153 (172)
T ss_dssp -TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-HHHHHHHH
T ss_pred cHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 67788999999999999999998887 33 256788888899999999999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHh
Q 020071 200 FTADGDMRQALNNLQATY 217 (331)
Q Consensus 200 ~~~~g~~r~~~~~l~~~~ 217 (331)
...++|++.+.+++++++
T Consensus 154 ~~~~~d~~~l~~EleKL~ 171 (172)
T PF06144_consen 154 ERVGNDLSLLQNELEKLS 171 (172)
T ss_dssp HHHTT-HHHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHHHhc
Confidence 999999999999999864
No 194
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.43 E-value=6.5e-12 Score=106.65 Aligned_cols=175 Identities=19% Similarity=0.317 Sum_probs=107.3
Q ss_pred cccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChH---------------
Q 020071 27 IVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGID--------------- 91 (331)
Q Consensus 27 ~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~--------------- 91 (331)
++|++..++.|.+.+.++...+++++||.|+|||++++.+.+.+...+. ..+.+.........
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGY--KVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EE--CCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCC--cEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 5799999999999999987667999999999999999999998843221 11222221111111
Q ss_pred --------------------------hHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC------HHHHHHHHHHHHH--
Q 020071 92 --------------------------VVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT------AGAQQALRRTMEI-- 137 (331)
Q Consensus 92 --------------------------~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~------~~~~~~Ll~~le~-- 137 (331)
.+...++.... .+.+-+|+|||++.+. ......|.++++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~------~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKK------KGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHH------CHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHh------cCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 11111111111 1234899999999988 4456677777776
Q ss_pred hcCCcEEEEeeCCC------CCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHhcCCCHHHH
Q 020071 138 YSNSTRFALACNVS------SKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPY--VPEGLEAIIFTADGDMRQA 209 (331)
Q Consensus 138 ~~~~~~~I~~~~~~------~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i--~~~~~~~l~~~~~g~~r~~ 209 (331)
...++.+|+++... ..-...+..|+..+.++|++.++..+++...+... ..+ +++.++.+...+||+|+.+
T Consensus 153 ~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l 231 (234)
T PF01637_consen 153 SQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYL 231 (234)
T ss_dssp --TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHH
T ss_pred ccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHH
Confidence 23455566665442 12334566788889999999999999999987766 555 9999999999999999976
Q ss_pred H
Q 020071 210 L 210 (331)
Q Consensus 210 ~ 210 (331)
.
T Consensus 232 ~ 232 (234)
T PF01637_consen 232 Q 232 (234)
T ss_dssp H
T ss_pred h
Confidence 4
No 195
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.43 E-value=1.2e-11 Score=121.04 Aligned_cols=193 Identities=15% Similarity=0.182 Sum_probs=131.2
Q ss_pred CCCCccccCHHHHHHHHHHHHcC--CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHH
Q 020071 22 TKVCDIVGNLDAVARLGIIARDG--NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKM 99 (331)
Q Consensus 22 ~~~~~~ig~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 99 (331)
..|++++|++..+..+.+.++.- ...+++|+|++|||||++|++++...... +.+++.++|..... +.+...+-.
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~~~~-~~~~~~lfg 449 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAAMPA-GLLESDLFG 449 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEecccCCh-hHhhhhhcC
Confidence 46889999999998887666542 22249999999999999999999865322 56888888876421 222221100
Q ss_pred HHhccc---------CCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCcEEEEeeCCC-------C
Q 020071 100 FAQKKV---------TLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS-----------NSTRFALACNVS-------S 152 (331)
Q Consensus 100 ~~~~~~---------~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~~~~-------~ 152 (331)
.....+ .+....+++++|||++.++.+.|..|++++++.. .++++|++++.. .
T Consensus 450 ~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~ 529 (686)
T PRK15429 450 HERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADR 529 (686)
T ss_pred cccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcC
Confidence 000000 0112346899999999999999999999998632 467888888653 2
Q ss_pred CCChhhhccc--ceeeecCCCH--HHHHHHH----HHHHHhcCC---CCCHHHHHHHHHhc-CCCHHHHHHHHHHHh
Q 020071 153 KIIEPIQSRC--AIVRFSRLSD--EEILSRL----MVVVQEEKV---PYVPEGLEAIIFTA-DGDMRQALNNLQATY 217 (331)
Q Consensus 153 ~l~~~l~sr~--~~i~~~~~~~--~~~~~~l----~~~~~~~~~---~i~~~~~~~l~~~~-~g~~r~~~~~l~~~~ 217 (331)
.+...+-.|. ..+.++|+.+ +++..++ .+.+.+.+. .+++++++.|..+. .||+|++.+.++.++
T Consensus 530 ~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~ 606 (686)
T PRK15429 530 EFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAV 606 (686)
T ss_pred cccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 3444455553 4467888876 4444443 344444343 47899999998876 799999999998875
No 196
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=9.9e-13 Score=109.91 Aligned_cols=186 Identities=19% Similarity=0.260 Sum_probs=124.9
Q ss_pred hhhcCCCCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEe
Q 020071 16 VEKYRPTKVCDIVGNLDAVARLGIIARD-----------G-NMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMEL 82 (331)
Q Consensus 16 ~~~~~p~~~~~~ig~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 82 (331)
.+|-.-.++.|+-|-+..+++++..++- | +.|. +++||+||+|||.+|+++++.. ...|..+
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT-----SATFlRv 250 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT-----SATFLRV 250 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc-----chhhhhh
Confidence 3454444899999999999999988752 3 2233 9999999999999999999987 4555555
Q ss_pred ecCCC------CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHHH-----hcC
Q 020071 83 NASDD------RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT-----------AGAQQALRRTMEI-----YSN 140 (331)
Q Consensus 83 ~~~~~------~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~-----------~~~~~~Ll~~le~-----~~~ 140 (331)
-+++. .+...++++++.+.... +.++||||+|... .+.|..++.+|.. ...
T Consensus 251 vGseLiQkylGdGpklvRqlF~vA~e~a-------pSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrg 323 (440)
T KOG0726|consen 251 VGSELIQKYLGDGPKLVRELFRVAEEHA-------PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRG 323 (440)
T ss_pred hhHHHHHHHhccchHHHHHHHHHHHhcC-------CceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccC
Confidence 44332 35556777776666544 5699999999774 2456666666653 345
Q ss_pred CcEEEEeeCCCCCCChhhhccc---ceeeecCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHH----HhcCCCHHHHHHH
Q 020071 141 STRFALACNVSSKIIEPIQSRC---AIVRFSRLSDEEILSRLMVVVQEEKVPYVPE-GLEAII----FTADGDMRQALNN 212 (331)
Q Consensus 141 ~~~~I~~~~~~~~l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~----~~~~g~~r~~~~~ 212 (331)
++.+|++||..+.+.|++.+-. ..+.|+.|+...-+.++.-...+ ..+.++ .++.++ ..+|.|+..+...
T Consensus 324 DvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~--Mtl~~dVnle~li~~kddlSGAdIkAictE 401 (440)
T KOG0726|consen 324 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSR--MTLAEDVNLEELIMTKDDLSGADIKAICTE 401 (440)
T ss_pred CeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecc--cchhccccHHHHhhcccccccccHHHHHHH
Confidence 7889999999999999998754 34799888877666665432211 122222 133333 3455566655555
Q ss_pred HHH
Q 020071 213 LQA 215 (331)
Q Consensus 213 l~~ 215 (331)
.-.
T Consensus 402 aGl 404 (440)
T KOG0726|consen 402 AGL 404 (440)
T ss_pred HhH
Confidence 433
No 197
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=8.6e-12 Score=102.27 Aligned_cols=161 Identities=20% Similarity=0.254 Sum_probs=110.5
Q ss_pred hhhhcCCCCCCccccCHHHHHHHHHHHHc-------------CCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEE
Q 020071 15 WVEKYRPTKVCDIVGNLDAVARLGIIARD-------------GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVME 81 (331)
Q Consensus 15 ~~~~~~p~~~~~~ig~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 81 (331)
..+|....+++-+-|-+..++.++..++- ..+..+|+|||||+|||.+|++++....| .|+.
T Consensus 137 mVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c-----~fir 211 (404)
T KOG0728|consen 137 MVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC-----TFIR 211 (404)
T ss_pred hhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcce-----EEEE
Confidence 34453333343344567777777776542 23344999999999999999999998843 4666
Q ss_pred eecCCC------CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHH-----Hhc
Q 020071 82 LNASDD------RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT-----------AGAQQALRRTME-----IYS 139 (331)
Q Consensus 82 ~~~~~~------~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~-----------~~~~~~Ll~~le-----~~~ 139 (331)
+++++. .+...+++++-.+.+. -+.++|.||+|.+. .+.|..++.++. +..
T Consensus 212 vsgselvqk~igegsrmvrelfvmareh-------apsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat 284 (404)
T KOG0728|consen 212 VSGSELVQKYIGEGSRMVRELFVMAREH-------APSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT 284 (404)
T ss_pred echHHHHHHHhhhhHHHHHHHHHHHHhc-------CCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc
Confidence 665542 1223444444443333 36799999999883 245666666665 345
Q ss_pred CCcEEEEeeCCCCCCChhhhccc---ceeeecCCCHHHHHHHHHHHHHhcC
Q 020071 140 NSTRFALACNVSSKIIEPIQSRC---AIVRFSRLSDEEILSRLMVVVQEEK 187 (331)
Q Consensus 140 ~~~~~I~~~~~~~~l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~ 187 (331)
.+..+|.++|...-+.+++.+-+ ..++|+||+.+...++++-..++-+
T Consensus 285 knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmn 335 (404)
T KOG0728|consen 285 KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN 335 (404)
T ss_pred cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhc
Confidence 68889999999999999998754 3489999999998888877665544
No 198
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=4.5e-12 Score=118.43 Aligned_cols=168 Identities=20% Similarity=0.176 Sum_probs=115.0
Q ss_pred CCCCccccCHHHHHHHHHHHH----------cCCC--CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC--
Q 020071 22 TKVCDIVGNLDAVARLGIIAR----------DGNM--PNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD-- 87 (331)
Q Consensus 22 ~~~~~~ig~~~~~~~l~~~l~----------~~~~--~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-- 87 (331)
-+|+|+=|-++++..+...+. +|-. ..+|||||||||||.+|+++|.++ ...|..+.+++.
T Consensus 669 V~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc-----sL~FlSVKGPELLN 743 (953)
T KOG0736|consen 669 VSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELLN 743 (953)
T ss_pred cchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc-----eeeEEeecCHHHHH
Confidence 489999999999998877654 3322 349999999999999999999988 777887776654
Q ss_pred ----CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHH-------------HHHHHHHHHHH----hcCCcEEEE
Q 020071 88 ----RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG-------------AQQALRRTMEI----YSNSTRFAL 146 (331)
Q Consensus 88 ----~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~-------------~~~~Ll~~le~----~~~~~~~I~ 146 (331)
.+.+.+|+.++.+. .+.+.|||+||+|.+.+. ....|+.=|+. +...+-+|.
T Consensus 744 MYVGqSE~NVR~VFerAR-------~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViG 816 (953)
T KOG0736|consen 744 MYVGQSEENVREVFERAR-------SAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIG 816 (953)
T ss_pred HHhcchHHHHHHHHHHhh-------ccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEe
Confidence 23345666655544 345789999999999542 23455555553 334556677
Q ss_pred eeCCCCCCChhhhc--ccce-eeecCCCHHHHH-HHHHHHHHhcCCCCCHH-HHHHHHHhcC
Q 020071 147 ACNVSSKIIEPIQS--RCAI-VRFSRLSDEEIL-SRLMVVVQEEKVPYVPE-GLEAIIFTAD 203 (331)
Q Consensus 147 ~~~~~~~l~~~l~s--r~~~-i~~~~~~~~~~~-~~l~~~~~~~~~~i~~~-~~~~l~~~~~ 203 (331)
+||.+.-+.|++.+ |+.. +.+.|..+.+-+ ++|+..-++ +.++++ .+..+++.+.
T Consensus 817 ATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk--FkLdedVdL~eiAk~cp 876 (953)
T KOG0736|consen 817 ATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK--FKLDEDVDLVEIAKKCP 876 (953)
T ss_pred cCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHH--ccCCCCcCHHHHHhhCC
Confidence 78889999999987 5544 466776665544 344444333 334443 3667777664
No 199
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1e-11 Score=115.53 Aligned_cols=197 Identities=19% Similarity=0.226 Sum_probs=133.7
Q ss_pred CCCCccccCHHHHHHHHHHHHc-----------CCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC--
Q 020071 22 TKVCDIVGNLDAVARLGIIARD-----------GNMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD-- 87 (331)
Q Consensus 22 ~~~~~~ig~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-- 87 (331)
.+|.|+.|.+++++.+...+.- +++|. ++++||||+|||.+|++++.+. +.+|..+++++.
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-----~VPFf~iSGS~FVe 221 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-----GVPFFSISGSDFVE 221 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-----CCCceeccchhhhh
Confidence 4899999999999987776542 35665 9999999999999999999998 778888777664
Q ss_pred ----CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHHHhc--CCcEEEEe
Q 020071 88 ----RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA--------------GAQQALRRTMEIYS--NSTRFALA 147 (331)
Q Consensus 88 ----~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~--------------~~~~~Ll~~le~~~--~~~~~I~~ 147 (331)
.+...+++....+.... +.+++|||+|.... ...|.|+--|+... ..+.+|.+
T Consensus 222 mfVGvGAsRVRdLF~qAkk~a-------P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaa 294 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNA-------PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAA 294 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccC-------CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEec
Confidence 34457777777665443 46999999998743 23455555555444 34556666
Q ss_pred eCCCCCCChhhhc--cc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHHh--h
Q 020071 148 CNVSSKIIEPIQS--RC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG----DMRQALNNLQATY--S 218 (331)
Q Consensus 148 ~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g----~~r~~~~~l~~~~--~ 218 (331)
||.++-+.+++.+ |+ ..+....|+-....++++-.++...+. ++-.+..+++.+.| |+-.++|+..-.+ .
T Consensus 295 TNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~ 373 (596)
T COG0465 295 TNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIARGTPGFSGADLANLLNEAALLAARR 373 (596)
T ss_pred CCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHh
Confidence 7777778788865 33 456788888888888888555443322 11224447776644 5555555543332 4
Q ss_pred CCCccchhhhhhh
Q 020071 219 GFRFVNQENVFKV 231 (331)
Q Consensus 219 ~~~~i~~~~v~~~ 231 (331)
+...|+..++.+.
T Consensus 374 n~~~i~~~~i~ea 386 (596)
T COG0465 374 NKKEITMRDIEEA 386 (596)
T ss_pred cCeeEeccchHHH
Confidence 5556776666543
No 200
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.39 E-value=1.2e-10 Score=99.73 Aligned_cols=217 Identities=17% Similarity=0.119 Sum_probs=138.3
Q ss_pred hhhcCCCCCCccccCHHHHHHHHHH---HH---cCCCCeEEEeCCCCccHHHHHHHHHHHhcCCC----CCCceEEeecC
Q 020071 16 VEKYRPTKVCDIVGNLDAVARLGII---AR---DGNMPNLILAGPPGTGKTTSILALAHELLGPN----YREAVMELNAS 85 (331)
Q Consensus 16 ~~~~~p~~~~~~ig~~~~~~~l~~~---l~---~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~----~~~~~~~~~~~ 85 (331)
.++.+-..=+.+||++++.+.+.+. +. ..++|+++|+|++|.|||++++.|.+...... ...+++.+..+
T Consensus 25 ~eRI~~i~~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P 104 (302)
T PF05621_consen 25 EERIAYIRADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMP 104 (302)
T ss_pred HHHHHHHhcCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecC
Confidence 3343333445688988887755444 43 35778899999999999999999998764321 12356666654
Q ss_pred CCCChHhHHHHHHHHHhcccC---------------CCCCCceEEEEeCCCCC---CHHHHHHHHHHHHHhcC--CcEEE
Q 020071 86 DDRGIDVVRNKIKMFAQKKVT---------------LPPGKHKVVVLDEADSM---TAGAQQALRRTMEIYSN--STRFA 145 (331)
Q Consensus 86 ~~~~~~~i~~~i~~~~~~~~~---------------~~~~~~~vviide~d~l---~~~~~~~Ll~~le~~~~--~~~~I 145 (331)
...+...+...+-.....|+. +..-+-+++||||+|.+ +...|..+++.+..... .+.+|
T Consensus 105 ~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV 184 (302)
T PF05621_consen 105 PEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIV 184 (302)
T ss_pred CCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeE
Confidence 443333333333222222221 01245799999999986 33445566555554332 34455
Q ss_pred EeeCCC----CCCChhhhcccceeeecCCCH-HHHHHHHHHHHHhc-----CCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 020071 146 LACNVS----SKIIEPIQSRCAIVRFSRLSD-EEILSRLMVVVQEE-----KVPYVPEGLEAIIFTADGDMRQALNNLQA 215 (331)
Q Consensus 146 ~~~~~~----~~l~~~l~sr~~~i~~~~~~~-~~~~~~l~~~~~~~-----~~~i~~~~~~~l~~~~~g~~r~~~~~l~~ 215 (331)
++.... -.-.+.+.+|+..+.+++... ++....+......- .---+++.+.+|...++|.++.+.+++..
T Consensus 185 ~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~ 264 (302)
T PF05621_consen 185 GVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLLNA 264 (302)
T ss_pred EeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHHHH
Confidence 554331 245689999999999988876 45666665543321 11125677899999999999999999976
Q ss_pred Hh-----hCCCccchhhhhhhc
Q 020071 216 TY-----SGFRFVNQENVFKVC 232 (331)
Q Consensus 216 ~~-----~~~~~i~~~~v~~~~ 232 (331)
++ ++.+.||.+.+..+-
T Consensus 265 aA~~AI~sG~E~It~~~l~~~~ 286 (302)
T PF05621_consen 265 AAIAAIRSGEERITREILDKID 286 (302)
T ss_pred HHHHHHhcCCceecHHHHhhCC
Confidence 64 577788888877643
No 201
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.39 E-value=2.8e-11 Score=113.65 Aligned_cols=204 Identities=21% Similarity=0.183 Sum_probs=138.2
Q ss_pred CCCccccCHHHHHHHHHHHHcCC--CCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHH
Q 020071 23 KVCDIVGNLDAVARLGIIARDGN--MPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMF 100 (331)
Q Consensus 23 ~~~~~ig~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 100 (331)
.+.+++|....+..+.+.+..-. ..+++++|++|+||+++|+.++...... ..+++.++|... ..+.+...+-..
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~--~~~~i~i~c~~~-~~~~~~~~lfg~ 212 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRA--KAPFIALNMAAI-PKDLIESELFGH 212 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCC--CCCeEeeeCCCC-CHHHHHHHhcCC
Confidence 46789999888877766665422 1238999999999999999999975432 568899999775 222222222110
Q ss_pred Hhccc---------CCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCcEEEEeeCCC-------CC
Q 020071 101 AQKKV---------TLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS-----------NSTRFALACNVS-------SK 153 (331)
Q Consensus 101 ~~~~~---------~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~~~~-------~~ 153 (331)
....+ .+....++.++|||++.|+...|..|++++++.. .++++|++++.. ..
T Consensus 213 ~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~ 292 (469)
T PRK10923 213 EKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGK 292 (469)
T ss_pred CCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCC
Confidence 00000 0112346789999999999999999999998532 356888888653 24
Q ss_pred CChhhhccc--ceeeecCCCH--HHHHHHHHHH----HHhcCC---CCCHHHHHHHHHhc-CCCHHHHHHHHHHHh--hC
Q 020071 154 IIEPIQSRC--AIVRFSRLSD--EEILSRLMVV----VQEEKV---PYVPEGLEAIIFTA-DGDMRQALNNLQATY--SG 219 (331)
Q Consensus 154 l~~~l~sr~--~~i~~~~~~~--~~~~~~l~~~----~~~~~~---~i~~~~~~~l~~~~-~g~~r~~~~~l~~~~--~~ 219 (331)
+.+.+..|+ ..+.++|+.+ +++..++... +.+.+. .+++++++.|..+. .||+|++.+.++.++ ..
T Consensus 293 ~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~~ 372 (469)
T PRK10923 293 FREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAA 372 (469)
T ss_pred chHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 557777775 4567777775 4444443333 333332 47999999999876 799999999998875 34
Q ss_pred CCccchhhhh
Q 020071 220 FRFVNQENVF 229 (331)
Q Consensus 220 ~~~i~~~~v~ 229 (331)
+..|+.+++-
T Consensus 373 ~~~i~~~~l~ 382 (469)
T PRK10923 373 GQEVLIQDLP 382 (469)
T ss_pred CCcccHHHCc
Confidence 4567776653
No 202
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.1e-11 Score=113.20 Aligned_cols=170 Identities=20% Similarity=0.190 Sum_probs=124.2
Q ss_pred CCCCccccCHHHHHHHHHHHHcC------------CC-CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC-
Q 020071 22 TKVCDIVGNLDAVARLGIIARDG------------NM-PNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD- 87 (331)
Q Consensus 22 ~~~~~~ig~~~~~~~l~~~l~~~------------~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~- 87 (331)
..|+|+-|-.+++..+...+... +. ..+|+|||||||||.+|.+++... +..|+.+.+++.
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~-----~~~fisvKGPElL 738 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS-----NLRFISVKGPELL 738 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC-----CeeEEEecCHHHH
Confidence 57899999999999988887642 11 239999999999999999999977 788888877653
Q ss_pred ---C--ChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHHH--hcCCcEEEEeeC
Q 020071 88 ---R--GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA-----------GAQQALRRTMEI--YSNSTRFALACN 149 (331)
Q Consensus 88 ---~--~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~-----------~~~~~Ll~~le~--~~~~~~~I~~~~ 149 (331)
+ +.+.+++++..+. ...+.++|+||+|.+.+ ...|.|+.-|+. .-.++.++.+|.
T Consensus 739 ~KyIGaSEq~vR~lF~rA~-------~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTs 811 (952)
T KOG0735|consen 739 SKYIGASEQNVRDLFERAQ-------SAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATS 811 (952)
T ss_pred HHHhcccHHHHHHHHHHhh-------ccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecC
Confidence 1 2234555554433 45678999999998843 457888887773 234555666667
Q ss_pred CCCCCChhhhccc---ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Q 020071 150 VSSKIIEPIQSRC---AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG 204 (331)
Q Consensus 150 ~~~~l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g 204 (331)
.++.+.|++.+-+ ..+.+++|++.+..++++...+...+. ++..++.++..+.|
T Consensus 812 RpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~T~g 868 (952)
T KOG0735|consen 812 RPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECLAQKTDG 868 (952)
T ss_pred CccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-cccchHHHhhhcCC
Confidence 7788888887743 346899999999999998876544322 34457888887765
No 203
>PHA02244 ATPase-like protein
Probab=99.35 E-value=7.3e-12 Score=110.20 Aligned_cols=128 Identities=20% Similarity=0.176 Sum_probs=88.9
Q ss_pred HHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHH---HHHHhcccCCCCCCc
Q 020071 36 RLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKI---KMFAQKKVTLPPGKH 112 (331)
Q Consensus 36 ~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i---~~~~~~~~~~~~~~~ 112 (331)
.+.+++..+. +++|+||+|+|||++|+++++.+ +.+++.++.... .. .+...+ ..+...++.....++
T Consensus 111 ri~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~l-----g~pfv~In~l~d-~~-~L~G~i~~~g~~~dgpLl~A~~~G 181 (383)
T PHA02244 111 DIAKIVNANI--PVFLKGGAGSGKNHIAEQIAEAL-----DLDFYFMNAIMD-EF-ELKGFIDANGKFHETPFYEAFKKG 181 (383)
T ss_pred HHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEecChH-HH-hhcccccccccccchHHHHHhhcC
Confidence 4455555554 49999999999999999999997 666777763211 00 000000 001111111112356
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHH-----------hcCCcEEEEeeCCC-----------CCCChhhhcccceeeecCC
Q 020071 113 KVVVLDEADSMTAGAQQALRRTMEI-----------YSNSTRFALACNVS-----------SKIIEPIQSRCAIVRFSRL 170 (331)
Q Consensus 113 ~vviide~d~l~~~~~~~Ll~~le~-----------~~~~~~~I~~~~~~-----------~~l~~~l~sr~~~i~~~~~ 170 (331)
.+++|||++.++++.+..|...+++ +++++++|+++|.. ..+.+++++|+..+.|..+
T Consensus 182 gvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~~dyp 261 (383)
T PHA02244 182 GLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIEFDYD 261 (383)
T ss_pred CEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEeeCCCC
Confidence 7999999999999999999999962 34688999999872 5678999999999999887
Q ss_pred CH
Q 020071 171 SD 172 (331)
Q Consensus 171 ~~ 172 (331)
++
T Consensus 262 ~~ 263 (383)
T PHA02244 262 EK 263 (383)
T ss_pred cH
Confidence 74
No 204
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.35 E-value=3.4e-11 Score=107.61 Aligned_cols=157 Identities=20% Similarity=0.208 Sum_probs=107.0
Q ss_pred hhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHh---
Q 020071 16 VEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDV--- 92 (331)
Q Consensus 16 ~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--- 92 (331)
..+.+-.....++|+++.+..+...+..|. |++|.||||+|||++|+.+++.+ +.+++.+++.......+
T Consensus 15 ~~~~~~~~~~~~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l-----~~~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 15 LGKIRSELEKVVVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARAL-----GLPFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred HHHHHhhcCCeeeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHh-----CCCeEEEecCCCCCHHHhcC
Confidence 333333334458899999988877777776 69999999999999999999999 67888888775533322
Q ss_pred ---HHHHHH-----HHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh------------cCCcEEEEeeC---
Q 020071 93 ---VRNKIK-----MFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY------------SNSTRFALACN--- 149 (331)
Q Consensus 93 ---i~~~i~-----~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~------------~~~~~~I~~~~--- 149 (331)
+..... .+...+.. ..-..++++||+++.+++.+++|+..|++. +....+|.++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~gpl~--~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e 165 (329)
T COG0714 88 TYAYAALLLEPGEFRFVPGPLF--AAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGE 165 (329)
T ss_pred chhHhhhhccCCeEEEecCCcc--cccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccc
Confidence 221110 11111110 111249999999999999999999999961 12334555556
Q ss_pred --CCCCCChhhhccc-ceeeecCCCHHHHHHHHHH
Q 020071 150 --VSSKIIEPIQSRC-AIVRFSRLSDEEILSRLMV 181 (331)
Q Consensus 150 --~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~ 181 (331)
....+++++++|| ..+.+..|+.++....+..
T Consensus 166 ~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 166 YEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILA 200 (329)
T ss_pred cCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHH
Confidence 3457899999999 6678887855544444433
No 205
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.35 E-value=1.2e-10 Score=97.99 Aligned_cols=118 Identities=20% Similarity=0.247 Sum_probs=95.5
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCC------------CCCCChhhhcccceeeecCCCHHHHHHHH
Q 020071 112 HKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNV------------SSKIIEPIQSRCAIVRFSRLSDEEILSRL 179 (331)
Q Consensus 112 ~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~------------~~~l~~~l~sr~~~i~~~~~~~~~~~~~l 179 (331)
+.|+||||+|.|.-+....|.+.+|+--.. ++|+++|. +..++-.+..|..++...|++.+++.++|
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAlE~d~~P-iiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL 367 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRALENDMAP-IIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKIL 367 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHhhhccCc-EEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHH
Confidence 679999999999999999999999963322 23344433 45788899999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHh-----hCCCccchhhhhh
Q 020071 180 MVVVQEEKVPYVPEGLEAIIFTA-DGDMRQALNNLQATY-----SGFRFVNQENVFK 230 (331)
Q Consensus 180 ~~~~~~~~~~i~~~~~~~l~~~~-~g~~r~~~~~l~~~~-----~~~~~i~~~~v~~ 230 (331)
+-+|..+++.+++++++.|.... ..++|-+++++.... .....+..+++..
T Consensus 368 ~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r 424 (454)
T KOG2680|consen 368 RIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIER 424 (454)
T ss_pred HhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHH
Confidence 99999999999999999999875 458999999986432 3445566666655
No 206
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.34 E-value=8.8e-11 Score=109.60 Aligned_cols=203 Identities=15% Similarity=0.172 Sum_probs=136.8
Q ss_pred CCCccccCHHHHHHHHHHHHcC--CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHH
Q 020071 23 KVCDIVGNLDAVARLGIIARDG--NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMF 100 (331)
Q Consensus 23 ~~~~~ig~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 100 (331)
.+.+++|....+..+...+..- ...+++++|++|+||+++|+.+....... ..+++.++|.... .+.+...+-..
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~--~~~~v~v~c~~~~-~~~~~~~lfg~ 213 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRK--DKRFVAINCAAIP-ENLLESELFGY 213 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcC--CCCeEEEECCCCC-hHHHHHHhcCC
Confidence 5667899888888777776542 22248999999999999999999865322 4578899988752 22222222110
Q ss_pred Hhccc---------CCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCcEEEEeeCCC-------CC
Q 020071 101 AQKKV---------TLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS-----------NSTRFALACNVS-------SK 153 (331)
Q Consensus 101 ~~~~~---------~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~~~~-------~~ 153 (331)
....+ .+....+++++|||++.|+...|..|++++++.. .++++|++++.. ..
T Consensus 214 ~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~ 293 (445)
T TIGR02915 214 EKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGT 293 (445)
T ss_pred CCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCC
Confidence 00000 0112457899999999999999999999998532 367888888653 34
Q ss_pred CChhhhccc--ceeeecCCCH--HHHHH----HHHHHHHhcC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHh--hC
Q 020071 154 IIEPIQSRC--AIVRFSRLSD--EEILS----RLMVVVQEEK---VPYVPEGLEAIIFTA-DGDMRQALNNLQATY--SG 219 (331)
Q Consensus 154 l~~~l~sr~--~~i~~~~~~~--~~~~~----~l~~~~~~~~---~~i~~~~~~~l~~~~-~g~~r~~~~~l~~~~--~~ 219 (331)
+.+.+-.|+ ..+.++|+.+ +++.. ++.+.+...+ ..+++++++.|..+. .||+|++.+.++.++ ..
T Consensus 294 ~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~ 373 (445)
T TIGR02915 294 FREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAE 373 (445)
T ss_pred ccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 455565664 3467777765 33333 3333333333 458999999999887 899999999998775 33
Q ss_pred CCccchhhh
Q 020071 220 FRFVNQENV 228 (331)
Q Consensus 220 ~~~i~~~~v 228 (331)
...|+.+++
T Consensus 374 ~~~i~~~~l 382 (445)
T TIGR02915 374 GNQITAEDL 382 (445)
T ss_pred CCcccHHHc
Confidence 446776654
No 207
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=3e-11 Score=108.03 Aligned_cols=176 Identities=23% Similarity=0.199 Sum_probs=123.6
Q ss_pred hhcCCCCCCccccCHHHHHHHHHHHHc---------C-CCC--eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeec
Q 020071 17 EKYRPTKVCDIVGNLDAVARLGIIARD---------G-NMP--NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNA 84 (331)
Q Consensus 17 ~~~~p~~~~~~ig~~~~~~~l~~~l~~---------~-~~~--~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 84 (331)
+.-++-.|+|+.|.+.+.+.+...+.- | +.| .+|+.||||+|||.+++++|.+. ...|..+.+
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~-----~atff~iSa 219 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES-----GATFFNISA 219 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh-----cceEeeccH
Confidence 345667899999998888877766532 1 112 28999999999999999999998 677777776
Q ss_pred CCCCC------hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH-----------HH-HHHHHHHHH---HhcCCcE
Q 020071 85 SDDRG------IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA-----------GA-QQALRRTME---IYSNSTR 143 (331)
Q Consensus 85 ~~~~~------~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~-----------~~-~~~Ll~~le---~~~~~~~ 143 (331)
+...+ ...++.++.-+. ...+.|+||||+|.+-. .. .+.|+...- .+.++++
T Consensus 220 ssLtsK~~Ge~eK~vralf~vAr-------~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvl 292 (428)
T KOG0740|consen 220 SSLTSKYVGESEKLVRALFKVAR-------SLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVL 292 (428)
T ss_pred HHhhhhccChHHHHHHHHHHHHH-------hcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEE
Confidence 54421 122333333222 33478999999998721 11 223333222 3445777
Q ss_pred EEEeeCCCCCCChhhhcccce-eeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Q 020071 144 FALACNVSSKIIEPIQSRCAI-VRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG 204 (331)
Q Consensus 144 ~I~~~~~~~~l~~~l~sr~~~-i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g 204 (331)
+|.+||.+..+..+++.|++- +.++.|+.+....++.+...+.+..+.+..+..|++.+.|
T Consensus 293 vigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Teg 354 (428)
T KOG0740|consen 293 VIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEG 354 (428)
T ss_pred EEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence 888889999999999999865 4677777777777788888887778888899999988755
No 208
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.33 E-value=7.7e-11 Score=112.56 Aligned_cols=123 Identities=20% Similarity=0.225 Sum_probs=85.7
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHh---------------------cCCcEEEEeeCCC--CCCChhhhcccc---
Q 020071 110 GKHKVVVLDEADSMTAGAQQALRRTMEIY---------------------SNSTRFALACNVS--SKIIEPIQSRCA--- 163 (331)
Q Consensus 110 ~~~~vviide~d~l~~~~~~~Ll~~le~~---------------------~~~~~~I~~~~~~--~~l~~~l~sr~~--- 163 (331)
+++.+++|||++.|+...|..|++.|++. |.++++|++++.. ..+.+.+++|+.
T Consensus 216 AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~ 295 (608)
T TIGR00764 216 AHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYG 295 (608)
T ss_pred CCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCe
Confidence 45789999999999999999999999742 2356788888753 578899999987
Q ss_pred e-eeec---CCCHHH---HHHHHHHHHHhcC--CCCCHHHHHHHHHhc----------CCCHHHHHHHHHHH---h--hC
Q 020071 164 I-VRFS---RLSDEE---ILSRLMVVVQEEK--VPYVPEGLEAIIFTA----------DGDMRQALNNLQAT---Y--SG 219 (331)
Q Consensus 164 ~-i~~~---~~~~~~---~~~~l~~~~~~~~--~~i~~~~~~~l~~~~----------~g~~r~~~~~l~~~---~--~~ 219 (331)
+ +.|. |.+.+. +..++.+.+++.| ..++++++..+++.+ ..+.|++-++++.+ + .+
T Consensus 296 v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~ 375 (608)
T TIGR00764 296 YEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSG 375 (608)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcC
Confidence 2 2333 333433 4556666666653 357899988887532 14578887777654 2 34
Q ss_pred CCccchhhhhhhc
Q 020071 220 FRFVNQENVFKVC 232 (331)
Q Consensus 220 ~~~i~~~~v~~~~ 232 (331)
...|+.++|.+++
T Consensus 376 ~~~I~~ehV~~Ai 388 (608)
T TIGR00764 376 KVYVTAEHVLKAK 388 (608)
T ss_pred CceecHHHHHHHH
Confidence 4578888887643
No 209
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.32 E-value=1.9e-11 Score=97.83 Aligned_cols=121 Identities=17% Similarity=0.217 Sum_probs=80.3
Q ss_pred cccCHHHHHHHHHHHHcC--CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcc
Q 020071 27 IVGNLDAVARLGIIARDG--NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKK 104 (331)
Q Consensus 27 ~ig~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~ 104 (331)
++|.+..+..+.+.++.- ...+++|+|++|+||+.+|+++++.... ...+|+.+||... ..+.+...+-......
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r--~~~pfi~vnc~~~-~~~~~e~~LFG~~~~~ 77 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPR--KNGPFISVNCAAL-PEELLESELFGHEKGA 77 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTT--TTS-EEEEETTTS--HHHHHHHHHEBCSSS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhc--ccCCeEEEehhhh-hcchhhhhhhcccccc
Confidence 578888888777776652 2234999999999999999999995432 3568999999876 3333333221111110
Q ss_pred c---------CCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh-----------cCCcEEEEeeCC
Q 020071 105 V---------TLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY-----------SNSTRFALACNV 150 (331)
Q Consensus 105 ~---------~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~~~ 150 (331)
+ .+..+...+++|||++.|+...|..|+++|++. +.++++|++|+.
T Consensus 78 ~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 78 FTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp STTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred ccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 0 011346889999999999999999999999952 247889988875
No 210
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.32 E-value=9.3e-11 Score=105.99 Aligned_cols=151 Identities=19% Similarity=0.232 Sum_probs=101.6
Q ss_pred CCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCC--CCceEEeecCC----------CC--C
Q 020071 24 VCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY--REAVMELNASD----------DR--G 89 (331)
Q Consensus 24 ~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~--~~~~~~~~~~~----------~~--~ 89 (331)
++++++.+.....+...+..++ +++|+||||+|||++|+.++..+.+... ....+.+...- .. +
T Consensus 174 l~d~~i~e~~le~l~~~L~~~~--~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vg 251 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIKK--NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVG 251 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCC
Confidence 6778888999998888888765 7999999999999999999998854321 11223332110 00 1
Q ss_pred h----HhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHH-HHHHHHHHHH----------------------hcCCc
Q 020071 90 I----DVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGA-QQALRRTMEI----------------------YSNST 142 (331)
Q Consensus 90 ~----~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~-~~~Ll~~le~----------------------~~~~~ 142 (331)
. ..+.+....+... ..++.++||||+++.+.+. ...++.++|. .|.++
T Consensus 252 y~~~~G~f~~~~~~A~~~-----p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl 326 (459)
T PRK11331 252 FRRKDGIFYNFCQQAKEQ-----PEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENV 326 (459)
T ss_pred eEecCchHHHHHHHHHhc-----ccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCCe
Confidence 0 0122222222222 2357899999999998553 5566665651 34677
Q ss_pred EEEEeeCCCC----CCChhhhcccceeeecC-CCHHHHHHHHHH
Q 020071 143 RFALACNVSS----KIIEPIQSRCAIVRFSR-LSDEEILSRLMV 181 (331)
Q Consensus 143 ~~I~~~~~~~----~l~~~l~sr~~~i~~~~-~~~~~~~~~l~~ 181 (331)
.+|.|+|... .+..++++|+..+++.| ++...+.+++..
T Consensus 327 ~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~~~~~~l~~ 370 (459)
T PRK11331 327 YIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFLLN 370 (459)
T ss_pred EEEEecCccccchhhccHHHHhhhheEEecCCCChHHHHHHHHh
Confidence 8888888764 57899999999999988 455667777654
No 211
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.30 E-value=1.7e-11 Score=109.51 Aligned_cols=106 Identities=23% Similarity=0.311 Sum_probs=76.1
Q ss_pred CceEEEEeCCCCCCH------------HHHHHHHHHHHHhc----------CCcEEEEee----CCCCCCChhhhcccce
Q 020071 111 KHKVVVLDEADSMTA------------GAQQALRRTMEIYS----------NSTRFALAC----NVSSKIIEPIQSRCAI 164 (331)
Q Consensus 111 ~~~vviide~d~l~~------------~~~~~Ll~~le~~~----------~~~~~I~~~----~~~~~l~~~l~sr~~~ 164 (331)
...+|+|||+|++.. ..|+.||+++|... .+..||++. ..++.+.|.+.-|+.+
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 326 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPI 326 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 578999999999853 36899999999522 233444442 2356789999999866
Q ss_pred -eeecCCCHHHHHHHHHH----H-------HHhcCC--CCCHHHHHHHHHhc--------CCCHHHHHHHHHHH
Q 020071 165 -VRFSRLSDEEILSRLMV----V-------VQEEKV--PYVPEGLEAIIFTA--------DGDMRQALNNLQAT 216 (331)
Q Consensus 165 -i~~~~~~~~~~~~~l~~----~-------~~~~~~--~i~~~~~~~l~~~~--------~g~~r~~~~~l~~~ 216 (331)
+.+.+++.+++..+|.. . ++.+|+ .+++++++.|++.+ +--.|.+...++..
T Consensus 327 ~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~ 400 (441)
T TIGR00390 327 RVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERL 400 (441)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHH
Confidence 59999999999998822 1 234454 56899999999765 33566777777655
No 212
>PRK15115 response regulator GlrR; Provisional
Probab=99.30 E-value=2.3e-10 Score=106.72 Aligned_cols=201 Identities=18% Similarity=0.212 Sum_probs=129.5
Q ss_pred ccccCHHHHHHHHHHHHc--CCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhc
Q 020071 26 DIVGNLDAVARLGIIARD--GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQK 103 (331)
Q Consensus 26 ~~ig~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 103 (331)
.++|....+..+...+.. ..-++++++|++|+||+++|+.+.+.... ...+++.++|... ..+.+...+-.....
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r--~~~~f~~i~c~~~-~~~~~~~~lfg~~~~ 211 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPR--ASKPFIAINCGAL-PEQLLESELFGHARG 211 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCC--CCCCeEEEeCCCC-CHHHHHHHhcCCCcC
Confidence 467766665554444332 12234899999999999999999987532 2467899998865 222222222111111
Q ss_pred cc---------CCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCcEEEEeeCCC-------CCCCh
Q 020071 104 KV---------TLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS-----------NSTRFALACNVS-------SKIIE 156 (331)
Q Consensus 104 ~~---------~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~~~~-------~~l~~ 156 (331)
.+ .+.....++++|||++.|+...|..|++++++.. .++++|++++.. ..+.+
T Consensus 212 ~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~ 291 (444)
T PRK15115 212 AFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFRE 291 (444)
T ss_pred CCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccH
Confidence 10 0112356799999999999999999999998632 256888887642 12333
Q ss_pred hhhccc--ceeeecCCCH--HHHHHH----HHHHHHhcC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHh--hCCCc
Q 020071 157 PIQSRC--AIVRFSRLSD--EEILSR----LMVVVQEEK---VPYVPEGLEAIIFTA-DGDMRQALNNLQATY--SGFRF 222 (331)
Q Consensus 157 ~l~sr~--~~i~~~~~~~--~~~~~~----l~~~~~~~~---~~i~~~~~~~l~~~~-~g~~r~~~~~l~~~~--~~~~~ 222 (331)
.+-.|. ..+.++|+.+ +++..+ +.+.+...+ ..+++++++.|..+. .||+|++.+.++.++ .....
T Consensus 292 ~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~~~~ 371 (444)
T PRK15115 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPV 371 (444)
T ss_pred HHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCc
Confidence 444443 3456666665 344433 333333333 248999999999998 999999999998765 34456
Q ss_pred cchhhhh
Q 020071 223 VNQENVF 229 (331)
Q Consensus 223 i~~~~v~ 229 (331)
|+.+++.
T Consensus 372 i~~~~l~ 378 (444)
T PRK15115 372 ISDALVE 378 (444)
T ss_pred cChhhhh
Confidence 7776664
No 213
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.29 E-value=8.6e-11 Score=105.07 Aligned_cols=106 Identities=23% Similarity=0.341 Sum_probs=76.1
Q ss_pred CceEEEEeCCCCCCH------------HHHHHHHHHHHHhc----------CCcEEEEee----CCCCCCChhhhcccce
Q 020071 111 KHKVVVLDEADSMTA------------GAQQALRRTMEIYS----------NSTRFALAC----NVSSKIIEPIQSRCAI 164 (331)
Q Consensus 111 ~~~vviide~d~l~~------------~~~~~Ll~~le~~~----------~~~~~I~~~----~~~~~l~~~l~sr~~~ 164 (331)
..++|+|||+|++.. ..|..||+++|... .+..||++. ..++.+.|.+.-|+.+
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI 328 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 578999999999842 36899999999522 233344432 2356789999999876
Q ss_pred -eeecCCCHHHHHHHHHH----H-------HHhcCC--CCCHHHHHHHHHhc--------CCCHHHHHHHHHHH
Q 020071 165 -VRFSRLSDEEILSRLMV----V-------VQEEKV--PYVPEGLEAIIFTA--------DGDMRQALNNLQAT 216 (331)
Q Consensus 165 -i~~~~~~~~~~~~~l~~----~-------~~~~~~--~i~~~~~~~l~~~~--------~g~~r~~~~~l~~~ 216 (331)
+.+.+++.+++.++|.. . ++.+|+ .+++++++.||+.+ +--.|.+...++.+
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~ 402 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKL 402 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHH
Confidence 59999999999988833 2 233454 56899999999765 33466777777665
No 214
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=3.5e-11 Score=99.61 Aligned_cols=177 Identities=19% Similarity=0.257 Sum_probs=119.5
Q ss_pred CCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC--
Q 020071 23 KVCDIVGNLDAVARLGIIARD-----------G-NMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD-- 87 (331)
Q Consensus 23 ~~~~~ig~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-- 87 (331)
+..|+-|-.+.++.++..++- | .+|. +|+|||||+|||.+|+++++.. +..|+.+-+++.
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfirvigselvq 249 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRVIGSELVQ 249 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEeehhHHHHH
Confidence 677888889999988877653 3 2233 9999999999999999999987 677887765543
Q ss_pred ----CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHH-----HhcCCcEEEEe
Q 020071 88 ----RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT-----------AGAQQALRRTME-----IYSNSTRFALA 147 (331)
Q Consensus 88 ----~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~-----------~~~~~~Ll~~le-----~~~~~~~~I~~ 147 (331)
.+...++++++.+. .....++|+||+|.+. .+.|..+++++. .|..+..++++
T Consensus 250 kyvgegarmvrelf~mar-------tkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlma 322 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMAR-------TKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMA 322 (435)
T ss_pred HHhhhhHHHHHHHHHHhc-------ccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEee
Confidence 12223344433222 2345799999998773 345666666665 46678899999
Q ss_pred eCCCCCCChhhhccc---ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhcCC----CHHHHHHHH
Q 020071 148 CNVSSKIIEPIQSRC---AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG-LEAIIFTADG----DMRQALNNL 213 (331)
Q Consensus 148 ~~~~~~l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~~~g----~~r~~~~~l 213 (331)
+|.+.-+.|++.+-. ..++|.-|+-+-...+++-.++.- .++.+. .+.|++++.. ++|.+....
T Consensus 323 tnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksm--sverdir~ellarlcpnstgaeirsvctea 394 (435)
T KOG0729|consen 323 TNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSM--SVERDIRFELLARLCPNSTGAEIRSVCTEA 394 (435)
T ss_pred cCCCCCcCHhhcCCcccccceeccCCcccccceeEEEecccc--ccccchhHHHHHhhCCCCcchHHHHHHHHh
Confidence 999999999997643 347888887776666665444322 334443 4556666543 555554443
No 215
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.27 E-value=2.2e-12 Score=100.64 Aligned_cols=110 Identities=26% Similarity=0.343 Sum_probs=74.5
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHH------HHHhcccCCCCCCceEEEEeCCC
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIK------MFAQKKVTLPPGKHKVVVLDEAD 121 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~------~~~~~~~~~~~~~~~vviide~d 121 (331)
+|+|+||+|+|||++++.+++.+ +.++..+++......+++..... .+...++.....+..+++|||++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~-----~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin 75 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL-----GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEIN 75 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH-----TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCG
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-----hcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcc
Confidence 48999999999999999999999 67777777766533322111100 00111111111257899999999
Q ss_pred CCCHHHHHHHHHHHHHh-------------cC------CcEEEEeeCCCC----CCChhhhccc
Q 020071 122 SMTAGAQQALRRTMEIY-------------SN------STRFALACNVSS----KIIEPIQSRC 162 (331)
Q Consensus 122 ~l~~~~~~~Ll~~le~~-------------~~------~~~~I~~~~~~~----~l~~~l~sr~ 162 (331)
+.+++.++.|+.++++. +. +.++|+++|... .+.+++++||
T Consensus 76 ~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 76 RAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp G--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred cCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 99999999999999831 11 378999999876 8899999996
No 216
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.27 E-value=6.7e-11 Score=111.37 Aligned_cols=155 Identities=22% Similarity=0.264 Sum_probs=98.3
Q ss_pred ccccCHHHHHHHHHHHHcCCCC------------eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCCh--H
Q 020071 26 DIVGNLDAVARLGIIARDGNMP------------NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGI--D 91 (331)
Q Consensus 26 ~~ig~~~~~~~l~~~l~~~~~~------------~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~--~ 91 (331)
.+.|++.++..+.-.+-+|..+ |+||+|+||+|||++|+.+++..... .+......+..+. .
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~----~~~~~~~~~~~~l~~~ 279 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA----VYTTGKGSSAVGLTAA 279 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc----eEcCCCCCCcCCcccc
Confidence 5778888877776666555322 79999999999999999999976321 1111000110000 0
Q ss_pred hHHHHH-HHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh-------------cCCcEEEEeeCCCC-----
Q 020071 92 VVRNKI-KMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY-------------SNSTRFALACNVSS----- 152 (331)
Q Consensus 92 ~i~~~i-~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~-------------~~~~~~I~~~~~~~----- 152 (331)
.+++.. ..+...+..+..++.++++|||++.+++..+.+|+..||+. +..+.+|.++|...
T Consensus 280 ~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~ 359 (509)
T smart00350 280 VTRDPETREFTLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDP 359 (509)
T ss_pred ceEccCcceEEecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCC
Confidence 011100 00000011111356789999999999999999999999853 25678888888642
Q ss_pred --------CCChhhhcccce-e-eecCCCHHHHHHHHHHHHH
Q 020071 153 --------KIIEPIQSRCAI-V-RFSRLSDEEILSRLMVVVQ 184 (331)
Q Consensus 153 --------~l~~~l~sr~~~-i-~~~~~~~~~~~~~l~~~~~ 184 (331)
.+++++.|||.. + ...+++.+.-.+++.++.+
T Consensus 360 ~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 360 KLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred CcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 588999999943 3 4566777666666665543
No 217
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.26 E-value=3.9e-10 Score=105.83 Aligned_cols=203 Identities=19% Similarity=0.154 Sum_probs=137.0
Q ss_pred CCccccCHHHHHHHHHHHHcC--CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHH
Q 020071 24 VCDIVGNLDAVARLGIIARDG--NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFA 101 (331)
Q Consensus 24 ~~~~ig~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 101 (331)
...++|.......+.+.+... ....+++.|++|+||+++|+.+....... ..+++.++|... ..+.+...+-...
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~--~~~~~~~~c~~~-~~~~~~~~lfg~~ 209 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRA--NGPFIALNMAAI-PKDLIESELFGHE 209 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCC--CCCeEEEeCCCC-CHHHHHHHhcCCC
Confidence 346888777777666555432 22238999999999999999999865332 567889998775 2233332221000
Q ss_pred hccc---------CCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCcEEEEeeCCC-------CCC
Q 020071 102 QKKV---------TLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS-----------NSTRFALACNVS-------SKI 154 (331)
Q Consensus 102 ~~~~---------~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~~~~-------~~l 154 (331)
...+ .+....+.+++|||++.++.+.|..|++++++.. .++++|++++.. ..+
T Consensus 210 ~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f 289 (463)
T TIGR01818 210 KGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKF 289 (463)
T ss_pred CCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCc
Confidence 0000 0112346789999999999999999999998532 256888887653 244
Q ss_pred Chhhhccc--ceeeecCCC--HHHHHHHHHHH----HHhcC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHh--hCC
Q 020071 155 IEPIQSRC--AIVRFSRLS--DEEILSRLMVV----VQEEK---VPYVPEGLEAIIFTA-DGDMRQALNNLQATY--SGF 220 (331)
Q Consensus 155 ~~~l~sr~--~~i~~~~~~--~~~~~~~l~~~----~~~~~---~~i~~~~~~~l~~~~-~g~~r~~~~~l~~~~--~~~ 220 (331)
.+.+..|. ..+.++|+. .+++..++... +...+ ..+++++++.|..+. .||+|++.+.++.++ ...
T Consensus 290 ~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~~ 369 (463)
T TIGR01818 290 REDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASG 369 (463)
T ss_pred HHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC
Confidence 45666765 467888888 46666665544 33333 468999999999886 799999999998875 334
Q ss_pred Cccchhhhh
Q 020071 221 RFVNQENVF 229 (331)
Q Consensus 221 ~~i~~~~v~ 229 (331)
..|+.+++.
T Consensus 370 ~~i~~~~l~ 378 (463)
T TIGR01818 370 DEVLVSDLP 378 (463)
T ss_pred CcccHHhch
Confidence 467776664
No 218
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.26 E-value=4.8e-10 Score=105.08 Aligned_cols=204 Identities=16% Similarity=0.164 Sum_probs=132.7
Q ss_pred CCCccccCHHHHHHHHHHHHcCC--CCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHH
Q 020071 23 KVCDIVGNLDAVARLGIIARDGN--MPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMF 100 (331)
Q Consensus 23 ~~~~~ig~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 100 (331)
.+..++|....+..+.+.+.... ..+++++|++|+||+++|+.++..... ...+++.++|.... .+.+...+-..
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~--~~~~~~~i~c~~~~-~~~~~~~lfg~ 217 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRR--AKGPFIKVNCAALP-ESLLESELFGH 217 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCC--CCCCeEEEECCCCC-HHHHHHHhcCC
Confidence 34568887777776666654432 224899999999999999999886532 35678989987652 22222221100
Q ss_pred Hhccc---------CCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCcEEEEeeCCC-------CC
Q 020071 101 AQKKV---------TLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS-----------NSTRFALACNVS-------SK 153 (331)
Q Consensus 101 ~~~~~---------~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~~~~-------~~ 153 (331)
....+ .+.....++++|||++.++...|..|++++++.. .++++|++++.. ..
T Consensus 218 ~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~ 297 (457)
T PRK11361 218 EKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGT 297 (457)
T ss_pred CCCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCC
Confidence 00000 1113456899999999999999999999998531 357888888653 23
Q ss_pred CChhhhccc--ceeeecCCCH--HHHHHH----HHHHHHhcC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHh--hC
Q 020071 154 IIEPIQSRC--AIVRFSRLSD--EEILSR----LMVVVQEEK---VPYVPEGLEAIIFTA-DGDMRQALNNLQATY--SG 219 (331)
Q Consensus 154 l~~~l~sr~--~~i~~~~~~~--~~~~~~----l~~~~~~~~---~~i~~~~~~~l~~~~-~g~~r~~~~~l~~~~--~~ 219 (331)
+.+.+-.|+ ..+.++|+.+ +++..+ +.+...+.+ ..+++++++.|..+. .||+|++.+.++.++ ..
T Consensus 298 ~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~~ 377 (457)
T PRK11361 298 FREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNS 377 (457)
T ss_pred chHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCC
Confidence 444455553 3456667764 344333 333333323 458999999999876 899999999998775 33
Q ss_pred CCccchhhhh
Q 020071 220 FRFVNQENVF 229 (331)
Q Consensus 220 ~~~i~~~~v~ 229 (331)
...|+.+++-
T Consensus 378 ~~~i~~~~l~ 387 (457)
T PRK11361 378 GPIIFSEDLP 387 (457)
T ss_pred CCcccHHHCh
Confidence 4467766654
No 219
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.26 E-value=4.1e-10 Score=107.33 Aligned_cols=212 Identities=19% Similarity=0.244 Sum_probs=133.9
Q ss_pred hcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC---------
Q 020071 18 KYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR--------- 88 (331)
Q Consensus 18 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~--------- 88 (331)
...|..|++++||++++..|...+..+. +++|+||||+|||++++.+++.+.+.....-++..|+.+..
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~~~~--~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~np~~~~~~~~~~v~~ 101 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAKQRR--HVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPNPEDPNNPKIRTVPA 101 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHHhCC--eEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeCCCcchHHHHHHHHH
Confidence 3458899999999999999999998875 79999999999999999999998764322112222211110
Q ss_pred --ChH---------------------------------------------------------------------------
Q 020071 89 --GID--------------------------------------------------------------------------- 91 (331)
Q Consensus 89 --~~~--------------------------------------------------------------------------- 91 (331)
+..
T Consensus 102 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nllv~ns~~~~ 181 (637)
T PRK13765 102 GKGKQIVEAHKEEARKRNQMRNMLMMIIIAGIIGYAFIYAGQILWGIIAAGLIYMALRYFRPKEDAMVPKLLVNNADKKT 181 (637)
T ss_pred hcCHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcCceEEEEEEEeCCCCCC
Confidence 000
Q ss_pred ---------hHHHHHHHHH----------hcccC------CCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh--------
Q 020071 92 ---------VVRNKIKMFA----------QKKVT------LPPGKHKVVVLDEADSMTAGAQQALRRTMEIY-------- 138 (331)
Q Consensus 92 ---------~i~~~i~~~~----------~~~~~------~~~~~~~vviide~d~l~~~~~~~Ll~~le~~-------- 138 (331)
...+++.... ...+. +..+++.+++|||++.|+...|..|++.|++.
T Consensus 182 aPvi~~~~p~~~~LfG~i~~~~~~~Gg~~t~~~~~i~~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~ 261 (637)
T PRK13765 182 APFVDATGAHAGALLGDVRHDPFQSGGLETPAHDRVEAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQS 261 (637)
T ss_pred CCEEEeCCCCHHHcCCccccccccccccccCccccCCCCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccc
Confidence 0000000000 00000 11245789999999999999999999999632
Q ss_pred -------------cCCcEEEEeeCCC--CCCChhhhcccce----eeecC---CCHHHHHHHHHHHHHh---c--CCCCC
Q 020071 139 -------------SNSTRFALACNVS--SKIIEPIQSRCAI----VRFSR---LSDEEILSRLMVVVQE---E--KVPYV 191 (331)
Q Consensus 139 -------------~~~~~~I~~~~~~--~~l~~~l~sr~~~----i~~~~---~~~~~~~~~l~~~~~~---~--~~~i~ 191 (331)
|.++++|++++.. ..+.+.+.+|+.. +.|.. -+++....+++..++. . -..++
T Consensus 262 e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~ 341 (637)
T PRK13765 262 ERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFD 341 (637)
T ss_pred cccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCC
Confidence 1256788888764 4567889898752 44543 3345566666544432 2 23689
Q ss_pred HHHHHHHHHhc---CCC-------HHHHHHHHHHH---h--hCCCccchhhhhhh
Q 020071 192 PEGLEAIIFTA---DGD-------MRQALNNLQAT---Y--SGFRFVNQENVFKV 231 (331)
Q Consensus 192 ~~~~~~l~~~~---~g~-------~r~~~~~l~~~---~--~~~~~i~~~~v~~~ 231 (331)
++++..|++.+ .|+ .|.+.++++.+ + .+...++.++|.+.
T Consensus 342 ~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a 396 (637)
T PRK13765 342 RDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEA 396 (637)
T ss_pred HHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHH
Confidence 99988888653 232 56666666543 2 33445777776554
No 220
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.25 E-value=9.8e-12 Score=100.94 Aligned_cols=125 Identities=28% Similarity=0.313 Sum_probs=75.6
Q ss_pred CCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEee------c----------CC
Q 020071 23 KVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELN------A----------SD 86 (331)
Q Consensus 23 ~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~------~----------~~ 86 (331)
.|.+++||+.++..+.-+..++. |++++||||+|||++|+.+...+..-... ...++. . ..
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG~h--~lLl~GppGtGKTmlA~~l~~lLP~l~~~-e~le~~~i~s~~~~~~~~~~~~~~P 77 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAGGH--HLLLIGPPGTGKTMLARRLPSLLPPLTEE-EALEVSKIYSVAGLGPDEGLIRQRP 77 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHCS--CCEE-CCESS--S-TT---S---EEEE---
T ss_pred ChhhhcCcHHHHHHHHHHHcCCC--CeEEECCCCCCHHHHHHHHHHhCCCCchH-HHhhhccccccccCCCCCceecCCC
Confidence 48899999999999998888764 69999999999999999999876432110 001100 0 00
Q ss_pred CC---ChHhHHHHHHHHHh-cccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHH-------------hcCCcEEEEeeC
Q 020071 87 DR---GIDVVRNKIKMFAQ-KKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEI-------------YSNSTRFALACN 149 (331)
Q Consensus 87 ~~---~~~~i~~~i~~~~~-~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~-------------~~~~~~~I~~~~ 149 (331)
.. .......++..-.. .+-....+.+.|+++||+..+.+...+.|+..+|+ +|.++.+|.++|
T Consensus 78 fr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~N 157 (206)
T PF01078_consen 78 FRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMN 157 (206)
T ss_dssp EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-
T ss_pred cccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEec
Confidence 00 00011111111100 11112245789999999999999999999999985 456777888876
Q ss_pred C
Q 020071 150 V 150 (331)
Q Consensus 150 ~ 150 (331)
.
T Consensus 158 P 158 (206)
T PF01078_consen 158 P 158 (206)
T ss_dssp S
T ss_pred c
Confidence 5
No 221
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2.3e-10 Score=109.42 Aligned_cols=200 Identities=19% Similarity=0.201 Sum_probs=146.0
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCC-----CceEEeecCCC
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYR-----EAVMELNASDD 87 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~-----~~~~~~~~~~~ 87 (331)
..+++.-|-..++.++|+++.+.++.+.+.....++-+|.|+||+|||.++..+|......+.. ..++.++....
T Consensus 158 ~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~L 237 (786)
T COG0542 158 RDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSL 237 (786)
T ss_pred hhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHH
Confidence 3566677788899999999999999999999887778999999999999999999998654322 23344432211
Q ss_pred ----CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC---------HHHHHHHHHHHHHhcCCcEEEEeeCCC---
Q 020071 88 ----RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT---------AGAQQALRRTMEIYSNSTRFALACNVS--- 151 (331)
Q Consensus 88 ----~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~---------~~~~~~Ll~~le~~~~~~~~I~~~~~~--- 151 (331)
....++.+.++....... ..+.-++||||+|.+- -++.|.|...|.. ...+.|.+|+..
T Consensus 238 vAGakyRGeFEeRlk~vl~ev~---~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR--GeL~~IGATT~~EYR 312 (786)
T COG0542 238 VAGAKYRGEFEERLKAVLKEVE---KSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR--GELRCIGATTLDEYR 312 (786)
T ss_pred hccccccCcHHHHHHHHHHHHh---cCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc--CCeEEEEeccHHHHH
Confidence 011233344333333221 2337899999999772 3467788888875 456777776542
Q ss_pred --CCCChhhhcccceeeecCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhcC------CCHHHHHHHHHHHh
Q 020071 152 --SKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE----EKVPYVPEGLEAIIFTAD------GDMRQALNNLQATY 217 (331)
Q Consensus 152 --~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~~~------g~~r~~~~~l~~~~ 217 (331)
-.-.+++.+|++.+.+..|+.++...+|+....+ +++.++++++...+.++. .-|.+++..++.++
T Consensus 313 k~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~ 390 (786)
T COG0542 313 KYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAG 390 (786)
T ss_pred HHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHH
Confidence 2346899999999999999999999998876553 578899999988887763 35788999998764
No 222
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.5e-10 Score=103.93 Aligned_cols=171 Identities=20% Similarity=0.245 Sum_probs=126.3
Q ss_pred CccccCHHHHHHHHHHHHc-----------C-CCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC----
Q 020071 25 CDIVGNLDAVARLGIIARD-----------G-NMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD---- 87 (331)
Q Consensus 25 ~~~ig~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~---- 87 (331)
.++.|-...+..++..+.- | +.|. +|+|||||+|||.++++++++. +..++.++++..
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~-----~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEY-----GAFLFLINGPELISKF 258 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHh-----CceeEecccHHHHHhc
Confidence 5666767777666555431 2 2333 8999999999999999999998 566777776533
Q ss_pred --CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH----------HHHHHHHHHHHHhc--CCcEEEEeeCCCCC
Q 020071 88 --RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA----------GAQQALRRTMEIYS--NSTRFALACNVSSK 153 (331)
Q Consensus 88 --~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~----------~~~~~Ll~~le~~~--~~~~~I~~~~~~~~ 153 (331)
.+...++..+..+.... .+.+++|||+|.+.+ .....|+.+++... .++++|.++|.+..
T Consensus 259 ~gEte~~LR~~f~~a~k~~------~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~s 332 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQ------VPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDS 332 (693)
T ss_pred ccchHHHHHHHHHHHhccC------CCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccc
Confidence 12234455555444322 278999999998863 34567888888665 67788888999999
Q ss_pred CChhhhc-cc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHH
Q 020071 154 IIEPIQS-RC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMR 207 (331)
Q Consensus 154 l~~~l~s-r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r 207 (331)
+.+.+++ |+ ..+.+.-|+..+..++++...++.+.. ++..+..++..++|-.+
T Consensus 333 ld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvG 387 (693)
T KOG0730|consen 333 LDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVG 387 (693)
T ss_pred cChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhH
Confidence 9999996 66 457888899999999999998888765 67778889988877543
No 223
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.20 E-value=3.3e-11 Score=89.80 Aligned_cols=111 Identities=22% Similarity=0.176 Sum_probs=60.7
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHH-HHHH--HhcccCCCCCCceEEEEeCCCCCC
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNK-IKMF--AQKKVTLPPGKHKVVVLDEADSMT 124 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~-i~~~--~~~~~~~~~~~~~vviide~d~l~ 124 (331)
|+||+|+||+|||++|+.+++.+ +..|..+.+.......++... +-.. ....+....--..++++||+++.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~-----~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrap 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL-----GLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAP 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT-----T--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-
T ss_pred CEeeECCCccHHHHHHHHHHHHc-----CCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCC
Confidence 78999999999999999999998 556666655432221111110 0000 000000001124699999999999
Q ss_pred HHHHHHHHHHHHHh-----------cCCcEEEEeeCCCC-----CCChhhhcccc
Q 020071 125 AGAQQALRRTMEIY-----------SNSTRFALACNVSS-----KIIEPIQSRCA 163 (331)
Q Consensus 125 ~~~~~~Ll~~le~~-----------~~~~~~I~~~~~~~-----~l~~~l~sr~~ 163 (331)
+..|.+|++.|++. |....+|.+.|..+ .++.++.+|+.
T Consensus 76 pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 76 PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 99999999999963 23345566666543 68888888874
No 224
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.19 E-value=3.1e-11 Score=96.89 Aligned_cols=101 Identities=29% Similarity=0.401 Sum_probs=68.8
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhc-CCCCCCceEEeecCCCCChHhHHHHHHHHHhccc-CCCCCCceEEEEeCCCCCCH
Q 020071 48 NLILAGPPGTGKTTSILALAHELL-GPNYREAVMELNASDDRGIDVVRNKIKMFAQKKV-TLPPGKHKVVVLDEADSMTA 125 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~-~~~~~~~~vviide~d~l~~ 125 (331)
+++|.||+|+|||.+|+.+++.+. +. ..+++.++++.....+.....+......+. .....+..||++||+|+.++
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~--~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGS--ERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SS--CCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCC--ccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 489999999999999999999995 33 457888887765442211111111111110 00012345999999999999
Q ss_pred -----------HHHHHHHHHHHHh-----------cCCcEEEEeeCC
Q 020071 126 -----------GAQQALRRTMEIY-----------SNSTRFALACNV 150 (331)
Q Consensus 126 -----------~~~~~Ll~~le~~-----------~~~~~~I~~~~~ 150 (331)
..++.|++++|+. -.++.||+++|-
T Consensus 83 ~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~ 129 (171)
T PF07724_consen 83 SNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNF 129 (171)
T ss_dssp TTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESS
T ss_pred cccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccc
Confidence 9999999999952 146678888764
No 225
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.19 E-value=1.2e-09 Score=104.34 Aligned_cols=189 Identities=19% Similarity=0.158 Sum_probs=119.0
Q ss_pred HHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC----CChHhHHHHHHHH--HhcccCCCCCCceE
Q 020071 41 ARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD----RGIDVVRNKIKMF--AQKKVTLPPGKHKV 114 (331)
Q Consensus 41 l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~----~~~~~i~~~i~~~--~~~~~~~~~~~~~v 114 (331)
.-+..+.|+||.|++|+|||++|+.+++.+.. ..+|+.+..... .+.-.+...+..- ...+-.+...++.+
T Consensus 11 av~p~~g~vLl~G~~GtgKs~lar~l~~~~~~---~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~Gv 87 (589)
T TIGR02031 11 AVDPSLGGVAIRARAGTGKTALARALAEILPP---IMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGV 87 (589)
T ss_pred ccCCCcceEEEEcCCCcHHHHHHHHHHHhCCc---CCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCc
Confidence 33445778999999999999999999998743 224666653211 1111111111100 00010111356789
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHhc-------------CCcEEEEeeCCCC---CCChhhhcccce-eee-cCCCHHHHH
Q 020071 115 VVLDEADSMTAGAQQALRRTMEIYS-------------NSTRFALACNVSS---KIIEPIQSRCAI-VRF-SRLSDEEIL 176 (331)
Q Consensus 115 viide~d~l~~~~~~~Ll~~le~~~-------------~~~~~I~~~~~~~---~l~~~l~sr~~~-i~~-~~~~~~~~~ 176 (331)
++|||++.+++..++.|+..|++.. ..+++|.++|... .+.+.+..|+.. +.+ .+++.++..
T Consensus 88 L~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~ 167 (589)
T TIGR02031 88 LYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRV 167 (589)
T ss_pred EeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHH
Confidence 9999999999999999999998532 4567787777654 788999999765 233 333444434
Q ss_pred HHHHHHH---------------------H--hcCCCCCHHHHHHHHHhc---C-CCHHHHHHHHHHH-----hhCCCccc
Q 020071 177 SRLMVVV---------------------Q--EEKVPYVPEGLEAIIFTA---D-GDMRQALNNLQAT-----YSGFRFVN 224 (331)
Q Consensus 177 ~~l~~~~---------------------~--~~~~~i~~~~~~~l~~~~---~-g~~r~~~~~l~~~-----~~~~~~i~ 224 (331)
++++... + ...+.++++.+++|+..+ + ..+|..+..++.+ ..+...++
T Consensus 168 eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr~~V~ 247 (589)
T TIGR02031 168 EIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGRTEVT 247 (589)
T ss_pred HHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCCCCCC
Confidence 4443321 1 235678898888888654 2 2367766666433 26777899
Q ss_pred hhhhhhhc
Q 020071 225 QENVFKVC 232 (331)
Q Consensus 225 ~~~v~~~~ 232 (331)
.+|+..++
T Consensus 248 ~~Dv~~a~ 255 (589)
T TIGR02031 248 EEDLKLAV 255 (589)
T ss_pred HHHHHHHH
Confidence 99987654
No 226
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.15 E-value=2.3e-09 Score=94.62 Aligned_cols=187 Identities=15% Similarity=0.082 Sum_probs=117.5
Q ss_pred chhhhcCCCCCC-ccccCHHHHHHHHHHHHcC----CCC-e-EEEeCCCCccHHHHHHHHHHHhcCC--CCCCceEEe--
Q 020071 14 PWVEKYRPTKVC-DIVGNLDAVARLGIIARDG----NMP-N-LILAGPPGTGKTTSILALAHELLGP--NYREAVMEL-- 82 (331)
Q Consensus 14 ~~~~~~~p~~~~-~~ig~~~~~~~l~~~l~~~----~~~-~-~ll~G~~G~GKt~la~~l~~~l~~~--~~~~~~~~~-- 82 (331)
++...++...|+ +++|+++.+..+..+++.. ... . ++|+||||+|||++|+++++.+..- ....+++.+
T Consensus 39 ~~~~~~~y~~F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 39 NNRGIKRYRFFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred CCcceeeccccchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 444567777888 8999999999887777652 112 2 6999999999999999999988430 000000000
Q ss_pred ---------------------------------------------------------------------------ecCCC
Q 020071 83 ---------------------------------------------------------------------------NASDD 87 (331)
Q Consensus 83 ---------------------------------------------------------------------------~~~~~ 87 (331)
.+.|.
T Consensus 119 ~~~~sp~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~ 198 (361)
T smart00763 119 NGEESPMHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDE 198 (361)
T ss_pred cCCCCCCccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCC
Confidence 01111
Q ss_pred CChHhHHHHHHHHHhc-----cc----------CCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CC
Q 020071 88 RGIDVVRNKIKMFAQK-----KV----------TLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS-----------NS 141 (331)
Q Consensus 88 ~~~~~i~~~i~~~~~~-----~~----------~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~-----------~~ 141 (331)
+...+.+++.+.... .. .++.+.++++-++|+.+...+.++.|+..+++.. .+
T Consensus 199 -~~qdi~~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d 277 (361)
T smart00763 199 -NNQDISELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPID 277 (361)
T ss_pred -CcccHHHHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccc
Confidence 111222222111000 00 1224567899999999999999999999998521 23
Q ss_pred cEEEEeeCCC-------CCCChhhhcccceeeecCCCH-HHHHHHHHHHHHhc---CCCCCHHHHHHHHHh
Q 020071 142 TRFALACNVS-------SKIIEPIQSRCAIVRFSRLSD-EEILSRLMVVVQEE---KVPYVPEGLEAIIFT 201 (331)
Q Consensus 142 ~~~I~~~~~~-------~~l~~~l~sr~~~i~~~~~~~-~~~~~~l~~~~~~~---~~~i~~~~~~~l~~~ 201 (331)
..||+++|.. .+..+++++||..+.++.+.. .+-.++.++.+... +..+.+.+++.++..
T Consensus 278 ~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~vpY~l~~~~E~~Iy~k~~~~s~~~~~~~aP~~le~aa~~ 348 (361)
T smart00763 278 GLIIAHSNESEWQRFKSNKKNEALLDRIIKVKVPYCLRVSEEAQIYEKLLRNSDLTEAHIAPHTLEMAALF 348 (361)
T ss_pred eEEEEeCCHHHHhhhhccccchhhhhceEEEeCCCcCCHHHHHHHHHHHhccCcCcccccCchHHHHHHHH
Confidence 4466667664 367899999999988875554 45555556555433 456677766666543
No 227
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.14 E-value=1.6e-10 Score=89.86 Aligned_cols=125 Identities=17% Similarity=0.201 Sum_probs=81.2
Q ss_pred ccCHHHHHHHHHHHHcC--CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhccc
Q 020071 28 VGNLDAVARLGIIARDG--NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKV 105 (331)
Q Consensus 28 ig~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 105 (331)
+|....++.+++.++.- ...+|+|+|++|+||+++|+.++..-.. ...+++.+++.... .+.++.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~--~~~~~~~~~~~~~~-----~~~l~~------ 67 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR--ANGPFIVIDCASLP-----AELLEQ------ 67 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT--CCS-CCCCCHHCTC-----HHHHHH------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc--cCCCeEEechhhCc-----HHHHHH------
Confidence 46667777777776552 2224999999999999999999986532 23455555554431 222222
Q ss_pred CCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh-cCCcEEEEeeCCC-C------CCChhhhccc--ceeeecC
Q 020071 106 TLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY-SNSTRFALACNVS-S------KIIEPIQSRC--AIVRFSR 169 (331)
Q Consensus 106 ~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~-~~~~~~I~~~~~~-~------~l~~~l~sr~--~~i~~~~ 169 (331)
....+++|+|+|.++.+.|..|..+++.. ..++++|+++... . .+.+.+-.|+ ..+.++|
T Consensus 68 ----a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lPp 137 (138)
T PF14532_consen 68 ----AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLPP 137 (138)
T ss_dssp ----CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE--
T ss_pred ----cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCCC
Confidence 24679999999999999999999999864 5688999998653 2 3445555553 3455554
No 228
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.14 E-value=4.1e-09 Score=98.36 Aligned_cols=201 Identities=14% Similarity=0.196 Sum_probs=129.9
Q ss_pred ccccCHHHHHHHHHHHHcC--CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhc
Q 020071 26 DIVGNLDAVARLGIIARDG--NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQK 103 (331)
Q Consensus 26 ~~ig~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 103 (331)
.++|....+..+...+..- ...+++++|++|+||+++|+.+...... ...+++.++|.... .+.+...+-.....
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~--~~~~~i~~~c~~~~-~~~~~~~lfg~~~~ 216 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSAR--SEKPLVTLNCAALN-ESLLESELFGHEKG 216 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCC--CCCCeeeeeCCCCC-HHHHHHHhcCCCCC
Confidence 4666666666554444322 2223899999999999999999886532 25689999998652 23333332111111
Q ss_pred cc---------CCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCcEEEEeeCCC-------CCCCh
Q 020071 104 KV---------TLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS-----------NSTRFALACNVS-------SKIIE 156 (331)
Q Consensus 104 ~~---------~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~~~~-------~~l~~ 156 (331)
.+ .+...++++++|||++.|+...|..|++++++.. .++++|++++.. ..+.+
T Consensus 217 ~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~ 296 (441)
T PRK10365 217 AFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQ 296 (441)
T ss_pred CcCCCCcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchH
Confidence 00 0113457899999999999999999999998532 256788877653 23444
Q ss_pred hhhccc--ceeeecCCCH--HHHHHHHH----HHHHhcC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHh--hCCCc
Q 020071 157 PIQSRC--AIVRFSRLSD--EEILSRLM----VVVQEEK---VPYVPEGLEAIIFTA-DGDMRQALNNLQATY--SGFRF 222 (331)
Q Consensus 157 ~l~sr~--~~i~~~~~~~--~~~~~~l~----~~~~~~~---~~i~~~~~~~l~~~~-~g~~r~~~~~l~~~~--~~~~~ 222 (331)
.+..|+ ..+.++|+.+ +++..++. +.+.+.+ ..+++++++.|..+. .||+|++.+.++.++ .....
T Consensus 297 ~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~~~~~ 376 (441)
T PRK10365 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEY 376 (441)
T ss_pred HHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCc
Confidence 444554 3456666664 24443333 3333333 358999999999988 899999999998865 34456
Q ss_pred cchhhhh
Q 020071 223 VNQENVF 229 (331)
Q Consensus 223 i~~~~v~ 229 (331)
|+.+++.
T Consensus 377 i~~~~l~ 383 (441)
T PRK10365 377 ISERELP 383 (441)
T ss_pred cchHhCc
Confidence 7766654
No 229
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.14 E-value=1.4e-09 Score=95.59 Aligned_cols=183 Identities=14% Similarity=0.189 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHHHcC--CCCeEEEeCCCCccHHHHHHHHHHHhc-CCCCCCceEEeecCCCCChH-hHHHHHHHHHhccc
Q 020071 30 NLDAVARLGIIARDG--NMPNLILAGPPGTGKTTSILALAHELL-GPNYREAVMELNASDDRGID-VVRNKIKMFAQKKV 105 (331)
Q Consensus 30 ~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~-~i~~~i~~~~~~~~ 105 (331)
++..++++.+.+... ....+.++|++|+|||++|..+++... ...++ .++.++........ ....++........
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~-~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFD-GVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCT-EEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccc-ccccccccccccccccccccccccccccc
Confidence 356778888888873 333379999999999999999998732 22221 22333322221111 22222222221100
Q ss_pred CC----------------CCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccceeeecC
Q 020071 106 TL----------------PPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSR 169 (331)
Q Consensus 106 ~~----------------~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~~i~~~~ 169 (331)
.. ...++.++|+|+++... ..+.+...+...+.++.+|+||.+. .+..........+++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~-~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDR-SVAGSLGGTDKVIELEP 156 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCG-GGGTTHHSCEEEEECSS
T ss_pred ccccccccccccccchhhhccccceeeeeeecccc--ccccccccccccccccccccccccc-ccccccccccccccccc
Confidence 00 03458899999987653 3444555554445578888888653 33333433367899999
Q ss_pred CCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 020071 170 LSDEEILSRLMVVVQEEK---VPYVPEGLEAIIFTADGDMRQALNNLQAT 216 (331)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~---~~i~~~~~~~l~~~~~g~~r~~~~~l~~~ 216 (331)
++.++..+++.+.+.... ..-.++.++.|++.++|.|-.+.-....+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l 206 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYL 206 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999876443 11224567899999999887665554443
No 230
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.13 E-value=1.1e-09 Score=106.50 Aligned_cols=147 Identities=16% Similarity=0.147 Sum_probs=91.2
Q ss_pred ccccCHHHHHHHHHHHHcCCC---------------------CeEEEeCCCCccHHHHHHHHHHHhcCCC--CCCceEEe
Q 020071 26 DIVGNLDAVARLGIIARDGNM---------------------PNLILAGPPGTGKTTSILALAHELLGPN--YREAVMEL 82 (331)
Q Consensus 26 ~~ig~~~~~~~l~~~l~~~~~---------------------~~~ll~G~~G~GKt~la~~l~~~l~~~~--~~~~~~~~ 82 (331)
.+.|++.++..+.-.+-+|.. .|+||+|+||+||+.+|+.+++...... .+..+..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 577898888866555544321 1699999999999999999998653221 01122222
Q ss_pred ecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh-------------cCCcEEEEeeC
Q 020071 83 NASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY-------------SNSTRFALACN 149 (331)
Q Consensus 83 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~-------------~~~~~~I~~~~ 149 (331)
++.... ......-..+...+..+..+.+++++|||++.++...+.+|++.||+. +..+++|.++|
T Consensus 531 gLTa~~--~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaN 608 (915)
T PTZ00111 531 GLTASI--KFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCN 608 (915)
T ss_pred cccchh--hhcccccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcC
Confidence 221110 000000000111111112356789999999999999999999999853 25788898888
Q ss_pred CCC-------------CCChhhhccccee--eecCCCHHH
Q 020071 150 VSS-------------KIIEPIQSRCAIV--RFSRLSDEE 174 (331)
Q Consensus 150 ~~~-------------~l~~~l~sr~~~i--~~~~~~~~~ 174 (331)
... .+++++.||+..+ .+.+++.+.
T Consensus 609 P~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~ 648 (915)
T PTZ00111 609 PINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDT 648 (915)
T ss_pred CcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHH
Confidence 731 4779999998443 455555543
No 231
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.13 E-value=1.1e-08 Score=88.33 Aligned_cols=202 Identities=19% Similarity=0.128 Sum_probs=132.7
Q ss_pred CCCCccccCHHHHHHHHHHHHcCCCC--eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHH
Q 020071 22 TKVCDIVGNLDAVARLGIIARDGNMP--NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKM 99 (331)
Q Consensus 22 ~~~~~~ig~~~~~~~l~~~l~~~~~~--~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 99 (331)
..|+.+++.+..++.+....++-.+- .+|+.|+.|+||..+|+++...... ...+|+.+||........-.+.
T Consensus 201 ~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R--~~~pFlalNCA~lPe~~aEsEl--- 275 (511)
T COG3283 201 SGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPR--HSKPFLALNCASLPEDAAESEL--- 275 (511)
T ss_pred cchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCcc--cCCCeeEeecCCCchhHhHHHH---
Confidence 36888999988888777776654321 2899999999999999998876543 3678999999765221111111
Q ss_pred HHhccc------CCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh-----------cCCcEEEEeeCCC-------CCCC
Q 020071 100 FAQKKV------TLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY-----------SNSTRFALACNVS-------SKII 155 (331)
Q Consensus 100 ~~~~~~------~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~~~~-------~~l~ 155 (331)
+...+. .+....+..|++||+..|++..|.+|++++.+. ..++++|.+|... .++-
T Consensus 276 FG~apg~~gk~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fR 355 (511)
T COG3283 276 FGHAPGDEGKKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFR 355 (511)
T ss_pred hcCCCCCCCccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcCchH
Confidence 111110 011245789999999999999999999999742 3467888776532 2344
Q ss_pred hhhhcccce--eeecCCCH------HHHHHHHHHHHHhcCC---CCCHHHHHHHHHhc-CCCHHHHHHHHHHHh--hCCC
Q 020071 156 EPIQSRCAI--VRFSRLSD------EEILSRLMVVVQEEKV---PYVPEGLEAIIFTA-DGDMRQALNNLQATY--SGFR 221 (331)
Q Consensus 156 ~~l~sr~~~--i~~~~~~~------~~~~~~l~~~~~~~~~---~i~~~~~~~l~~~~-~g~~r~~~~~l~~~~--~~~~ 221 (331)
..+--|..+ ++++|+.+ .-..-++++.+.+.+. +++++.+.++.++. .||.|++.|.+-.++ -.+.
T Consensus 356 eDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~Eg~ 435 (511)
T COG3283 356 EDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLLEGY 435 (511)
T ss_pred HHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHhccC
Confidence 445455444 45555554 2234456666666664 46778888888765 799999999985443 2344
Q ss_pred ccchhhh
Q 020071 222 FVNQENV 228 (331)
Q Consensus 222 ~i~~~~v 228 (331)
.++.+++
T Consensus 436 ~l~i~~i 442 (511)
T COG3283 436 ELRIEDI 442 (511)
T ss_pred ccchhhc
Confidence 4555544
No 232
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.11 E-value=3.5e-09 Score=98.72 Aligned_cols=150 Identities=27% Similarity=0.279 Sum_probs=96.9
Q ss_pred CCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC-CC---------hH
Q 020071 22 TKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD-RG---------ID 91 (331)
Q Consensus 22 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-~~---------~~ 91 (331)
..|.++.|++.+++.+...+..+. |++|.||+|+|||++++.+...+.... ...+++...... .+ ..
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~~g~--~vlliG~pGsGKTtlar~l~~llp~~~-~~~~le~~~i~s~~g~~~~~~~~~~~ 265 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAAGGH--NLLLFGPPGSGKTMLASRLQGILPPLT-NEEAIETARIWSLVGKLIDRKQIKQR 265 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhccCCC--EEEEEecCCCCHHHHHHHHhcccCCCC-CcEEEeccccccchhhhccccccccC
Confidence 378999999999998888887664 699999999999999999988653221 111111111000 00 00
Q ss_pred hHH---------HHHHHH-HhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh-------------cCCcEEEEee
Q 020071 92 VVR---------NKIKMF-AQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY-------------SNSTRFALAC 148 (331)
Q Consensus 92 ~i~---------~~i~~~-~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~-------------~~~~~~I~~~ 148 (331)
.++ ..+... ...+-......+.+++|||++.++...++.|+..||+. +.++++|.++
T Consensus 266 Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~ 345 (499)
T TIGR00368 266 PFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAM 345 (499)
T ss_pred CccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEec
Confidence 000 000000 00000111345789999999999999999999999853 3577888888
Q ss_pred CCC-----------------------CCCChhhhcccce-eeecCCCHHH
Q 020071 149 NVS-----------------------SKIIEPIQSRCAI-VRFSRLSDEE 174 (331)
Q Consensus 149 ~~~-----------------------~~l~~~l~sr~~~-i~~~~~~~~~ 174 (331)
|.- .++..++.+|+.. +.+++++.++
T Consensus 346 Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 346 NPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK 395 (499)
T ss_pred CCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence 752 1578889999865 4777776544
No 233
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.4e-09 Score=104.81 Aligned_cols=187 Identities=18% Similarity=0.121 Sum_probs=131.3
Q ss_pred CCCCCCccccCHHHHHHHHHHHHc------------CCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCC
Q 020071 20 RPTKVCDIVGNLDAVARLGIIARD------------GNMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASD 86 (331)
Q Consensus 20 ~p~~~~~~ig~~~~~~~l~~~l~~------------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (331)
+-..|+++-|-+..+..|+.++-. =..|. +||+||||+|||..|++++...........|..-.+.+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 345789999999999999888653 12344 99999999999999999999886554444444433333
Q ss_pred CCC------hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHHHhc--CCcEEEEe
Q 020071 87 DRG------IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA-----------GAQQALRRTMEIYS--NSTRFALA 147 (331)
Q Consensus 87 ~~~------~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~-----------~~~~~Ll~~le~~~--~~~~~I~~ 147 (331)
..+ ..+.+-...++. ...+.+++.||+|.+.+ .....|+.+|+..+ ..+++|.+
T Consensus 340 ~lskwvgEaERqlrllFeeA~-------k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigA 412 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQ-------KTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGA 412 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHh-------ccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcc
Confidence 211 123444444333 33478999999998753 12345667777544 45677778
Q ss_pred eCCCCCCChhhhccc---ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 020071 148 CNVSSKIIEPIQSRC---AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNL 213 (331)
Q Consensus 148 ~~~~~~l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l 213 (331)
+|.+..+.++++... ..+.|+-++.+....++.-.-.+..-.+.......+++.+.|-.+.-+..+
T Consensus 413 TnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaL 481 (1080)
T KOG0732|consen 413 TNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKAL 481 (1080)
T ss_pred cCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHH
Confidence 899999999998864 347888888888888877666666677889999999998876555544444
No 234
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.10 E-value=2.7e-09 Score=90.04 Aligned_cols=124 Identities=20% Similarity=0.291 Sum_probs=89.4
Q ss_pred cccCHHHHHHHHHHHHc----CC--CCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEE-----eecCCCCChHhHH
Q 020071 27 IVGNLDAVARLGIIARD----GN--MPN-LILAGPPGTGKTTSILALAHELLGPNYREAVME-----LNASDDRGIDVVR 94 (331)
Q Consensus 27 ~ig~~~~~~~l~~~l~~----~~--~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~-----~~~~~~~~~~~i~ 94 (331)
+.||.-+.+.+.+.+++ .. .|- +=|+|++||||..+++.+++.+...+...+++. .+.+....++..+
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk 163 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYK 163 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHH
Confidence 66887777766666654 32 233 589999999999999999999987766655543 3344444555555
Q ss_pred HHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc-------CCcEEEEeeCCCC
Q 020071 95 NKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS-------NSTRFALACNVSS 152 (331)
Q Consensus 95 ~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~-------~~~~~I~~~~~~~ 152 (331)
+.++........ ...+.++|+||+|+|++...++|..+++.+| .++.|||.+|.-.
T Consensus 164 ~eL~~~v~~~v~--~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg 226 (344)
T KOG2170|consen 164 EELKNRVRGTVQ--ACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGG 226 (344)
T ss_pred HHHHHHHHHHHH--hcCCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCcc
Confidence 555554443332 4678899999999999999999999998554 3568999987643
No 235
>PF13173 AAA_14: AAA domain
Probab=99.08 E-value=1.5e-09 Score=83.20 Aligned_cols=119 Identities=27% Similarity=0.375 Sum_probs=80.8
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHH-HHHHHHHhcccCCCCCCceEEEEeCCCCCCHH
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVR-NKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG 126 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~-~~i~~~~~~~~~~~~~~~~vviide~d~l~~~ 126 (331)
.++++||.|+|||++++.+++.+. ....++.++..+........ +..+.+.+. . ..+..+|+|||++.++ +
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~i~iDEiq~~~-~ 75 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPDLLEYFLEL-I---KPGKKYIFIDEIQYLP-D 75 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhhhHHHHHHh-h---ccCCcEEEEehhhhhc-c
Confidence 379999999999999999999884 23556777766542211110 112222222 1 2367899999999996 4
Q ss_pred HHHHHHHHHHHhcCCcEEEEeeCCCC----CCChhhhcccceeeecCCCHHHH
Q 020071 127 AQQALRRTMEIYSNSTRFALACNVSS----KIIEPIQSRCAIVRFSRLSDEEI 175 (331)
Q Consensus 127 ~~~~Ll~~le~~~~~~~~I~~~~~~~----~l~~~l~sr~~~i~~~~~~~~~~ 175 (331)
....+..+.+.. .+..+|+++.... .....+..|...+++.|++-.|.
T Consensus 76 ~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 76 WEDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 556666666654 5677888776543 44567778889999999997764
No 236
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.7e-08 Score=94.29 Aligned_cols=188 Identities=12% Similarity=0.125 Sum_probs=121.4
Q ss_pred CccccCHHHHHHHHHHHHcC--CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC--ChHhHHHHHHHH
Q 020071 25 CDIVGNLDAVARLGIIARDG--NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR--GIDVVRNKIKMF 100 (331)
Q Consensus 25 ~~~ig~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~--~~~~i~~~i~~~ 100 (331)
.|++--+...+.-.+..-.. ..++++|+||+|+|||.+++++++.+.. +....+..++|+... ..+.+...+..+
T Consensus 408 ~d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k-~~~~hv~~v~Cs~l~~~~~e~iQk~l~~v 486 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYSK-DLIAHVEIVSCSTLDGSSLEKIQKFLNNV 486 (952)
T ss_pred CceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhcc-ccceEEEEEechhccchhHHHHHHHHHHH
Confidence 45555444444333322221 2345999999999999999999999863 222334445565543 345566666555
Q ss_pred HhcccCCCCCCceEEEEeCCCCCCH----------HHHHHHH----HHHHH---hcCCcEEEEeeCCCCCCChhhhcc--
Q 020071 101 AQKKVTLPPGKHKVVVLDEADSMTA----------GAQQALR----RTMEI---YSNSTRFALACNVSSKIIEPIQSR-- 161 (331)
Q Consensus 101 ~~~~~~~~~~~~~vviide~d~l~~----------~~~~~Ll----~~le~---~~~~~~~I~~~~~~~~l~~~l~sr-- 161 (331)
..... .-.+.+|++|+.|.+.. ...+.|. ..+.. ......||++.+....+.+.+.+-
T Consensus 487 fse~~---~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~ 563 (952)
T KOG0735|consen 487 FSEAL---WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLL 563 (952)
T ss_pred HHHHH---hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccc
Confidence 55444 23467999999998732 1112222 33332 334456777777777888888764
Q ss_pred cc-eeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Q 020071 162 CA-IVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG-DMRQALNNLQAT 216 (331)
Q Consensus 162 ~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~~~~~l~~~ 216 (331)
++ ++.+++|...+..++|+..+++.......+.++.++..++| ..+.+.-..+.+
T Consensus 564 Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRa 620 (952)
T KOG0735|consen 564 FQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERA 620 (952)
T ss_pred eEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHH
Confidence 43 46899999999999999999887766777888889999987 444444444443
No 237
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=99.05 E-value=2.5e-08 Score=82.69 Aligned_cols=211 Identities=21% Similarity=0.219 Sum_probs=132.4
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCC---
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRG--- 89 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--- 89 (331)
.|++...+|..+--.--+.+.+..+...+..+.. -+.++|+.|+|||.+.+++...+.+. ....+.++......
T Consensus 19 ~pf~~~~~~~~~~~~a~h~e~l~~l~~~i~d~qg-~~~vtGevGsGKTv~~Ral~~s~~~d--~~~~v~i~~~~~s~~~~ 95 (269)
T COG3267 19 LPFSWDIQPGLDYWAADHNEALLMLHAAIADGQG-ILAVTGEVGSGKTVLRRALLASLNED--QVAVVVIDKPTLSDATL 95 (269)
T ss_pred CCCccchhhhhhhhhhhhhHHHHHHHHHHhcCCc-eEEEEecCCCchhHHHHHHHHhcCCC--ceEEEEecCcchhHHHH
Confidence 3555555555444455577788888888888762 26999999999999999888777643 11223333322211
Q ss_pred ---------------hHhHHHHHHHHHhcccCCCCCCc-eEEEEeCCCCCCHHHHHHHHHHHH---HhcCCcEEEEeeCC
Q 020071 90 ---------------IDVVRNKIKMFAQKKVTLPPGKH-KVVVLDEADSMTAGAQQALRRTME---IYSNSTRFALACNV 150 (331)
Q Consensus 90 ---------------~~~i~~~i~~~~~~~~~~~~~~~-~vviide~d~l~~~~~~~Ll~~le---~~~~~~~~I~~~~~ 150 (331)
....-+.+........ ..+.+ -++++||++.++.+..+.|..+.+ +......++++...
T Consensus 96 ~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~--~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp 173 (269)
T COG3267 96 LEAIVADLESQPKVNVNAVLEQIDRELAALV--KKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQP 173 (269)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHH--HhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCc
Confidence 1101111111111111 02334 799999999999999888887765 23333445555432
Q ss_pred C--C----CCChhhhcccce-eeecCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHhcCCCHHHHHHHHHHH----
Q 020071 151 S--S----KIIEPIQSRCAI-VRFSRLSDEEILSRLMVVVQEEKVP---YVPEGLEAIIFTADGDMRQALNNLQAT---- 216 (331)
Q Consensus 151 ~--~----~l~~~l~sr~~~-i~~~~~~~~~~~~~l~~~~~~~~~~---i~~~~~~~l~~~~~g~~r~~~~~l~~~---- 216 (331)
. . -....+..|+.+ +..+|++.++...+++.+++..+.. ++++++..+...+.|-|+..-+.+..+
T Consensus 174 ~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~Al~~a 253 (269)
T COG3267 174 KLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATLALDAA 253 (269)
T ss_pred ccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 1 1 112455668888 9999999999999999998876532 578899999999999777655554332
Q ss_pred -hhCCCccchhhh
Q 020071 217 -YSGFRFVNQENV 228 (331)
Q Consensus 217 -~~~~~~i~~~~v 228 (331)
..+...|+...+
T Consensus 254 ~~a~~~~v~~a~~ 266 (269)
T COG3267 254 YSAGEDGVSEAEI 266 (269)
T ss_pred HHcCCCccchhhc
Confidence 244555555443
No 238
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.9e-09 Score=91.30 Aligned_cols=128 Identities=20% Similarity=0.291 Sum_probs=91.2
Q ss_pred CCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC
Q 020071 22 TKVCDIVGNLDAVARLGIIARD-----------G-NMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR 88 (331)
Q Consensus 22 ~~~~~~ig~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (331)
-+|+++-|.-.++..++..+.= | ++|- ++||||||+|||.++++++..+ +.+++.+.++...
T Consensus 129 ~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m-----g~nfl~v~ss~lv 203 (388)
T KOG0651|consen 129 ISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM-----GVNFLKVVSSALV 203 (388)
T ss_pred cCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc-----CCceEEeeHhhhh
Confidence 3888999988888888776531 2 3344 7999999999999999999998 6777776654431
Q ss_pred ----C--hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHHH-----hcCCcEEEE
Q 020071 89 ----G--IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT-----------AGAQQALRRTMEI-----YSNSTRFAL 146 (331)
Q Consensus 89 ----~--~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~-----------~~~~~~Ll~~le~-----~~~~~~~I~ 146 (331)
+ ...|++....+... .+.++++||+|... .+.+..|.++++. .-..+.+|+
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~-------~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~Im 276 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREV-------IPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIM 276 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhh-------CceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEE
Confidence 1 12445544444333 35899999998662 2345566666653 235788999
Q ss_pred eeCCCCCCChhhhcc
Q 020071 147 ACNVSSKIIEPIQSR 161 (331)
Q Consensus 147 ~~~~~~~l~~~l~sr 161 (331)
++|+++-|.|+|.+-
T Consensus 277 atNrpdtLdpaLlRp 291 (388)
T KOG0651|consen 277 ATNRPDTLDPALLRP 291 (388)
T ss_pred ecCCccccchhhcCC
Confidence 999999999998774
No 239
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=8.1e-09 Score=87.86 Aligned_cols=171 Identities=22% Similarity=0.333 Sum_probs=108.0
Q ss_pred cccCHHHHHHHH--------HHHHc---C----CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCC--
Q 020071 27 IVGNLDAVARLG--------IIARD---G----NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRG-- 89 (331)
Q Consensus 27 ~ig~~~~~~~l~--------~~l~~---~----~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~-- 89 (331)
++||+++++.|. +.-.. . .-+++|+.||.|+|||.+|+.+|+.+ +.+|.--++.....
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L-----nVPFaiADATtLTEAG 137 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL-----NVPFAIADATTLTEAG 137 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh-----CCCeeeccccchhhcc
Confidence 689999987542 11111 1 12359999999999999999999999 66776555543311
Q ss_pred --hHhHHHHHHHHHhcc-cCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHHH-----hc--------
Q 020071 90 --IDVVRNKIKMFAQKK-VTLPPGKHKVVVLDEADSMTA--------------GAQQALRRTMEI-----YS-------- 139 (331)
Q Consensus 90 --~~~i~~~i~~~~~~~-~~~~~~~~~vviide~d~l~~--------------~~~~~Ll~~le~-----~~-------- 139 (331)
.+++...+....+.. +....+++++|+|||+|++.. ..|++|++++|. ||
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~ 217 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQ 217 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCc
Confidence 133444443333322 222246789999999998843 469999999983 22
Q ss_pred ------CCcEEEEeeCC------------------------C----------------------CCCChhhhccccee-e
Q 020071 140 ------NSTRFALACNV------------------------S----------------------SKIIEPIQSRCAIV-R 166 (331)
Q Consensus 140 ------~~~~~I~~~~~------------------------~----------------------~~l~~~l~sr~~~i-~ 166 (331)
++.-++|+|-- . ..+.|.+.-|..++ .
T Consensus 218 Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~ 297 (408)
T COG1219 218 QEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIAT 297 (408)
T ss_pred cceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeee
Confidence 11123333210 0 12557777777665 8
Q ss_pred ecCCCHHHHHHHHHH-----------HHHhcC--CCCCHHHHHHHHHhc
Q 020071 167 FSRLSDEEILSRLMV-----------VVQEEK--VPYVPEGLEAIIFTA 202 (331)
Q Consensus 167 ~~~~~~~~~~~~l~~-----------~~~~~~--~~i~~~~~~~l~~~~ 202 (331)
+.+++.+.+.++|.. .+..++ +.++++++..+++.+
T Consensus 298 L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A 346 (408)
T COG1219 298 LEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKA 346 (408)
T ss_pred hhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHH
Confidence 889999998888743 122233 346888888888654
No 240
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.99 E-value=2.2e-08 Score=88.91 Aligned_cols=163 Identities=18% Similarity=0.072 Sum_probs=106.9
Q ss_pred CCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCC----CCCceE------------------
Q 020071 23 KVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN----YREAVM------------------ 80 (331)
Q Consensus 23 ~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~----~~~~~~------------------ 80 (331)
.|.-++|++.....|....-.-.+..+|+-|+.|+|||+++++++..|.... +.+++-
T Consensus 15 pf~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~ 94 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDEL 94 (423)
T ss_pred chhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhcccc
Confidence 5667899999999877666666666799999999999999999999885321 100000
Q ss_pred -----------EeecCCC------CChHhHHHHHHH--HHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHH----
Q 020071 81 -----------ELNASDD------RGIDVVRNKIKM--FAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEI---- 137 (331)
Q Consensus 81 -----------~~~~~~~------~~~~~i~~~i~~--~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~---- 137 (331)
.++.+.. .|.=.+...++. ....+--+..+++.|++|||+..|....++.|+..+++
T Consensus 95 ~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n~ 174 (423)
T COG1239 95 EWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVND 174 (423)
T ss_pred ccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhCCce
Confidence 0000000 000011111111 00112223367899999999999999999999999986
Q ss_pred ---------hcCCcEEEEeeCCC-CCCChhhhccc-ceeeecCC-CHHHHHHHHHHHHHh
Q 020071 138 ---------YSNSTRFALACNVS-SKIIEPIQSRC-AIVRFSRL-SDEEILSRLMVVVQE 185 (331)
Q Consensus 138 ---------~~~~~~~I~~~~~~-~~l~~~l~sr~-~~i~~~~~-~~~~~~~~l~~~~~~ 185 (331)
.|.++.+|.++|.. ..|-+.|+.|+ ..+...++ +.++..+++.+....
T Consensus 175 vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 175 VEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred eeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 34567778888764 58999999995 44555544 456666666665543
No 241
>PRK12377 putative replication protein; Provisional
Probab=98.97 E-value=3.3e-09 Score=90.03 Aligned_cols=126 Identities=22% Similarity=0.312 Sum_probs=78.6
Q ss_pred hhcCCCCCCccc----cCHHHHHHHHHHHHcC--CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCCh
Q 020071 17 EKYRPTKVCDIV----GNLDAVARLGIIARDG--NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGI 90 (331)
Q Consensus 17 ~~~~p~~~~~~i----g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 90 (331)
..++..+|+.+. |+..++......+..- ...+++|+||+|+|||++|.++++.+...+. .++.++..+. .
T Consensus 66 ~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~--~v~~i~~~~l--~ 141 (248)
T PRK12377 66 PLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGR--SVIVVTVPDV--M 141 (248)
T ss_pred cccccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCC--CeEEEEHHHH--H
Confidence 445666788875 3444555555554431 2245999999999999999999999865533 3333333221 1
Q ss_pred HhHHHHHH------HHHhcccCCCCCCceEEEEeCC--CCCCHHHHHHHHHHHHHhcC-CcEEEEeeCCC
Q 020071 91 DVVRNKIK------MFAQKKVTLPPGKHKVVVLDEA--DSMTAGAQQALRRTMEIYSN-STRFALACNVS 151 (331)
Q Consensus 91 ~~i~~~i~------~~~~~~~~~~~~~~~vviide~--d~l~~~~~~~Ll~~le~~~~-~~~~I~~~~~~ 151 (331)
..+..... ..... .....++||||+ +..++..++.|..+++.... ....|++||..
T Consensus 142 ~~l~~~~~~~~~~~~~l~~-----l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 142 SRLHESYDNGQSGEKFLQE-----LCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLN 206 (248)
T ss_pred HHHHHHHhccchHHHHHHH-----hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 11111110 01000 234679999999 56677888899999986544 46788888853
No 242
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=4.2e-09 Score=89.70 Aligned_cols=158 Identities=22% Similarity=0.264 Sum_probs=100.0
Q ss_pred CCccccCHHHHHHHHHHHHc------CC-------CCe-EEEeCCCCccHHHHHHHHHHHhcCC----CCCCceEEeecC
Q 020071 24 VCDIVGNLDAVARLGIIARD------GN-------MPN-LILAGPPGTGKTTSILALAHELLGP----NYREAVMELNAS 85 (331)
Q Consensus 24 ~~~~ig~~~~~~~l~~~l~~------~~-------~~~-~ll~G~~G~GKt~la~~l~~~l~~~----~~~~~~~~~~~~ 85 (331)
|+.++.....++++..++.. .+ ... +|++||||+|||++-+++|+.+.-. -+....+++|+.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 45566666666666555432 11 112 6999999999999999999998521 123356788875
Q ss_pred CCCC------hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH---------------HHHHHHHHHHHHhc--CCc
Q 020071 86 DDRG------IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA---------------GAQQALRRTMEIYS--NST 142 (331)
Q Consensus 86 ~~~~------~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~---------------~~~~~Ll~~le~~~--~~~ 142 (331)
...+ ...+....+...+..-. .+.--.|+|||++.+.. ...|+|+.-++... +++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d--~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nv 298 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVED--RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNV 298 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhC--CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCE
Confidence 4321 12222333332222210 23345788999988732 24788888888543 455
Q ss_pred EEEEeeCCCCCCChhhhcccce-eeecCCCHHHHHHHHHHHH
Q 020071 143 RFALACNVSSKIIEPIQSRCAI-VRFSRLSDEEILSRLMVVV 183 (331)
Q Consensus 143 ~~I~~~~~~~~l~~~l~sr~~~-i~~~~~~~~~~~~~l~~~~ 183 (331)
.++.++|-.+.+..++..|+.+ ..+.||+..-+.++++.-.
T Consensus 299 liL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 299 LILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred EEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHH
Confidence 4445555568899999999865 4788998888888876643
No 243
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.97 E-value=7.8e-08 Score=86.61 Aligned_cols=200 Identities=18% Similarity=0.198 Sum_probs=128.5
Q ss_pred ccccCHHHHHHHHHHHHcCC--CC----------eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhH
Q 020071 26 DIVGNLDAVARLGIIARDGN--MP----------NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVV 93 (331)
Q Consensus 26 ~~ig~~~~~~~l~~~l~~~~--~~----------~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i 93 (331)
+|.||+++++.|.-++-+|. .+ |+++.|.||+.|+.+.+.+.+-.... .+ ..+....|+...
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRg-----vY-TTGrGSSGVGLT 416 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRG-----VY-TTGRGSSGVGLT 416 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCccc-----ce-ecCCCCCccccc
Confidence 78899999998887776531 11 48999999999999999998865321 22 222222232222
Q ss_pred HHHHHHHHhcccCC-----CCCCceEEEEeCCCCCCHHHHHHHHHHHHHh-------------cCCcEEEEeeCCCC---
Q 020071 94 RNKIKMFAQKKVTL-----PPGKHKVVVLDEADSMTAGAQQALRRTMEIY-------------SNSTRFALACNVSS--- 152 (331)
Q Consensus 94 ~~~i~~~~~~~~~~-----~~~~~~vviide~d~l~~~~~~~Ll~~le~~-------------~~~~~~I~~~~~~~--- 152 (331)
....+.-.+..+.+ --++.+|+.|||+|+|.+...-++.++||.. ...|.++.++|...
T Consensus 417 AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRY 496 (721)
T KOG0482|consen 417 AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRY 496 (721)
T ss_pred hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCcccccc
Confidence 22222111111111 1246889999999999999999999999853 24455666666521
Q ss_pred ----------CCChhhhcccce-------------------------------eeecCCCHHHHHHHHHHHHHhcCCCCC
Q 020071 153 ----------KIIEPIQSRCAI-------------------------------VRFSRLSDEEILSRLMVVVQEEKVPYV 191 (331)
Q Consensus 153 ----------~l~~~l~sr~~~-------------------------------i~~~~~~~~~~~~~l~~~~~~~~~~i~ 191 (331)
.++.++.||+.. ..|.|++.+-++.++. .|+..+-.++
T Consensus 497 nprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~-~ak~~~P~vp 575 (721)
T KOG0482|consen 497 NPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYIS-LAKRKNPVVP 575 (721)
T ss_pred CcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHH-HHhhcCCCCC
Confidence 478899998643 5788888888888875 4566666778
Q ss_pred HHHHHHHHHh--------------cCCCHHHHHHHHHHH---h--hCCCccchhhhhhhc
Q 020071 192 PEGLEAIIFT--------------ADGDMRQALNNLQAT---Y--SGFRFVNQENVFKVC 232 (331)
Q Consensus 192 ~~~~~~l~~~--------------~~g~~r~~~~~l~~~---~--~~~~~i~~~~v~~~~ 232 (331)
++..+++... +.-.+|.++.+++-. + .-...+..++|.+.+
T Consensus 576 ~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EAL 635 (721)
T KOG0482|consen 576 EALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEAL 635 (721)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 8887777633 124678777777532 1 223445666665543
No 244
>PRK08116 hypothetical protein; Validated
Probab=98.94 E-value=6.5e-09 Score=89.76 Aligned_cols=146 Identities=19% Similarity=0.212 Sum_probs=88.8
Q ss_pred hhcCCCCCCcccc---CHHHHHHHHHHHHc---CCCC--eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC
Q 020071 17 EKYRPTKVCDIVG---NLDAVARLGIIARD---GNMP--NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR 88 (331)
Q Consensus 17 ~~~~p~~~~~~ig---~~~~~~~l~~~l~~---~~~~--~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (331)
.+|+-.+|+.+.. +..++....+.+.+ .... .++|+|++|+|||++|.++++.+... +.+++.++..+.
T Consensus 77 ~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~~~~l- 153 (268)
T PRK08116 77 EKFRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVNFPQL- 153 (268)
T ss_pred HHHHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHH-
Confidence 5566667777653 33344445544442 1112 38999999999999999999998654 334555543321
Q ss_pred ChHhHHHHH--------HHHHhcccCCCCCCceEEEEeCC--CCCCHHHHHHHHHHHHHh-cCCcEEEEeeCCCC-----
Q 020071 89 GIDVVRNKI--------KMFAQKKVTLPPGKHKVVVLDEA--DSMTAGAQQALRRTMEIY-SNSTRFALACNVSS----- 152 (331)
Q Consensus 89 ~~~~i~~~i--------~~~~~~~~~~~~~~~~vviide~--d~l~~~~~~~Ll~~le~~-~~~~~~I~~~~~~~----- 152 (331)
...+.... ..+... .....++||||+ +..+...+..|..+++.. .....+|++||...
T Consensus 154 -l~~i~~~~~~~~~~~~~~~~~~-----l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~ 227 (268)
T PRK08116 154 -LNRIKSTYKSSGKEDENEIIRS-----LVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKN 227 (268)
T ss_pred -HHHHHHHHhccccccHHHHHHH-----hcCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH
Confidence 01111110 001110 123569999999 556777888899988853 34567888888642
Q ss_pred CCChhhhcc----cceeeecCCC
Q 020071 153 KIIEPIQSR----CAIVRFSRLS 171 (331)
Q Consensus 153 ~l~~~l~sr----~~~i~~~~~~ 171 (331)
.+...+.|| |..+.|...+
T Consensus 228 ~~~~ri~sRl~e~~~~v~~~g~d 250 (268)
T PRK08116 228 QYGKRIYDRILEMCTPVENEGKS 250 (268)
T ss_pred HHhHHHHHHHHHcCEEEEeeCcC
Confidence 234566666 6667776655
No 245
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=98.92 E-value=4.3e-08 Score=69.96 Aligned_cols=87 Identities=29% Similarity=0.495 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccChHhHHHHHHHHHHHHHHHhcCCCchHHH
Q 020071 235 PHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQL 314 (331)
Q Consensus 235 ~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l 314 (331)
+++..+.++++.+.++++.++...+++++..|+++.+|+..+++.+....+++..+.+++..++++++++..|+++.+++
T Consensus 3 p~~~~i~~i~~~~~~~~~~~~~~~~~~l~~~G~s~~~Il~~l~~~l~~~~~~~~~k~~i~~~la~~e~rl~~G~~e~lQl 82 (89)
T PF08542_consen 3 PPPEVIEEILESCLNGDFKEARKKLYELLVEGYSASDILKQLHEVLVESDIPDSQKAEILKILAEIEYRLSDGASEILQL 82 (89)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTSTSSHHHHHHHHHHHHHHHHHHHTTC-HHHHH
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhHHHHCCCCHHHHH
Confidence 45678889999999999999999999999999999999999999888877889999999999999999999999999999
Q ss_pred HHHHHHH
Q 020071 315 CGLLAKL 321 (331)
Q Consensus 315 ~~l~~~l 321 (331)
+.++.++
T Consensus 83 ~alva~~ 89 (89)
T PF08542_consen 83 EALVAAF 89 (89)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 9999875
No 246
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.5e-08 Score=98.65 Aligned_cols=117 Identities=23% Similarity=0.357 Sum_probs=86.0
Q ss_pred ccccCHHHHHHHHHHHHcC-----CC-Ce--EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC----------
Q 020071 26 DIVGNLDAVARLGIIARDG-----NM-PN--LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD---------- 87 (331)
Q Consensus 26 ~~ig~~~~~~~l~~~l~~~-----~~-~~--~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~---------- 87 (331)
.++||++++..+..++..- +. |. ++|.||.|+|||.+|++++..+++. ...++.++.+..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgs--e~~~IriDmse~~evskligsp 640 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGS--EENFIRLDMSEFQEVSKLIGSP 640 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCC--ccceEEechhhhhhhhhccCCC
Confidence 4889999999888887642 21 22 7999999999999999999999765 445676666531
Q ss_pred ---CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCcEEEEeeCCC
Q 020071 88 ---RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS-----------NSTRFALACNVS 151 (331)
Q Consensus 88 ---~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~~~~ 151 (331)
.+.+....+-+... ..++.||++||+|+.....++.|+..+++.. .+++||+|+|.-
T Consensus 641 ~gyvG~e~gg~Lteavr-------rrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~ 711 (898)
T KOG1051|consen 641 PGYVGKEEGGQLTEAVK-------RRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVG 711 (898)
T ss_pred cccccchhHHHHHHHHh-------cCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecccc
Confidence 22222222222222 3457899999999999999999999999532 577888888753
No 247
>PRK08181 transposase; Validated
Probab=98.89 E-value=1.3e-08 Score=87.38 Aligned_cols=104 Identities=20% Similarity=0.279 Sum_probs=64.4
Q ss_pred HHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHH-----HHHHhcccCCCCCC
Q 020071 37 LGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKI-----KMFAQKKVTLPPGK 111 (331)
Q Consensus 37 l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i-----~~~~~~~~~~~~~~ 111 (331)
+..++..+. +++|+||+|+|||+++.++++.+...+. .++.++..+. .+.+.... ...... ..+
T Consensus 99 ~~~~~~~~~--nlll~Gp~GtGKTHLa~Aia~~a~~~g~--~v~f~~~~~L--~~~l~~a~~~~~~~~~l~~-----l~~ 167 (269)
T PRK08181 99 GDSWLAKGA--NLLLFGPPGGGKSHLAAAIGLALIENGW--RVLFTRTTDL--VQKLQVARRELQLESAIAK-----LDK 167 (269)
T ss_pred HHHHHhcCc--eEEEEecCCCcHHHHHHHHHHHHHHcCC--ceeeeeHHHH--HHHHHHHHhCCcHHHHHHH-----Hhc
Confidence 335666543 6999999999999999999998755433 3333332211 11111100 000000 124
Q ss_pred ceEEEEeCCCCCC--HHHHHHHHHHHHHhcCCcEEEEeeCCC
Q 020071 112 HKVVVLDEADSMT--AGAQQALRRTMEIYSNSTRFALACNVS 151 (331)
Q Consensus 112 ~~vviide~d~l~--~~~~~~Ll~~le~~~~~~~~I~~~~~~ 151 (331)
..++||||++... ...++.|..+++....+..+|+++|.+
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 5699999998774 445678889888655556788888764
No 248
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.7e-08 Score=89.31 Aligned_cols=165 Identities=23% Similarity=0.302 Sum_probs=108.8
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCC----hHhHHHHHHHHHhcc-cCCCCCCceEEEEeCCCC
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRG----IDVVRNKIKMFAQKK-VTLPPGKHKVVVLDEADS 122 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~----~~~i~~~i~~~~~~~-~~~~~~~~~vviide~d~ 122 (331)
++|+.||+|+|||.+|+.+|+.+ +.+|.-.+|....- .++++..+....... +....+...+|+|||+|+
T Consensus 228 NvLllGPtGsGKTllaqTLAr~l-----dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDK 302 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVL-----DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDK 302 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHh-----CCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhh
Confidence 59999999999999999999999 78888877765411 134444554444322 111245788999999999
Q ss_pred CC--------------HHHHHHHHHHHHHh-------------cC------CcEEEEeeCC-------------------
Q 020071 123 MT--------------AGAQQALRRTMEIY-------------SN------STRFALACNV------------------- 150 (331)
Q Consensus 123 l~--------------~~~~~~Ll~~le~~-------------~~------~~~~I~~~~~------------------- 150 (331)
+. +..|++|++++|.. +. ++-++|++.-
T Consensus 303 i~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slG 382 (564)
T KOG0745|consen 303 ITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLG 382 (564)
T ss_pred hcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcc
Confidence 85 34699999999821 11 1113333210
Q ss_pred ---C------------------------------------CCCChhhhccccee-eecCCCHHHHHHHHHHH--------
Q 020071 151 ---S------------------------------------SKIIEPIQSRCAIV-RFSRLSDEEILSRLMVV-------- 182 (331)
Q Consensus 151 ---~------------------------------------~~l~~~l~sr~~~i-~~~~~~~~~~~~~l~~~-------- 182 (331)
+ .-+.|.+.-|+.++ .|.+++.+++..+|..-
T Consensus 383 Fg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qy 462 (564)
T KOG0745|consen 383 FGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQY 462 (564)
T ss_pred cCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHH
Confidence 0 01456677777664 89999999988887431
Q ss_pred ---HHhcC--CCCCHHHHHHHHHhc---CCCHHHHHHHHHHHh
Q 020071 183 ---VQEEK--VPYVPEGLEAIIFTA---DGDMRQALNNLQATY 217 (331)
Q Consensus 183 ---~~~~~--~~i~~~~~~~l~~~~---~g~~r~~~~~l~~~~ 217 (331)
+...+ +.+++.+++.+++.+ +--.|-+..+++.+.
T Consensus 463 k~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~L 505 (564)
T KOG0745|consen 463 KKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLL 505 (564)
T ss_pred HHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 22222 457899999998775 334666666776653
No 249
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.88 E-value=1.3e-06 Score=89.04 Aligned_cols=182 Identities=15% Similarity=0.117 Sum_probs=117.3
Q ss_pred CCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEee--cCCCCChHhHHHHH
Q 020071 20 RPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELN--ASDDRGIDVVRNKI 97 (331)
Q Consensus 20 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~--~~~~~~~~~i~~~i 97 (331)
.|..-.+++-+++....|... ...+-++++||+|+|||+++..+.... + ++..++ ..+......+..++
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~-----~-~~~w~~l~~~d~~~~~f~~~l~ 79 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK-----N-NLGWYSLDESDNQPERFASYLI 79 (903)
T ss_pred CCCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC-----C-CeEEEecCcccCCHHHHHHHHH
Confidence 466667888888888877532 233447999999999999999988654 2 333333 22221111111111
Q ss_pred HHH------------------------------HhcccCCCCCCceEEEEeCCCCCCHHH-HHHHHHHHHHhcCCcEEEE
Q 020071 98 KMF------------------------------AQKKVTLPPGKHKVVVLDEADSMTAGA-QQALRRTMEIYSNSTRFAL 146 (331)
Q Consensus 98 ~~~------------------------------~~~~~~~~~~~~~vviide~d~l~~~~-~~~Ll~~le~~~~~~~~I~ 146 (331)
..+ ..... ...++-++||||+|.+.... .+.+..++...+++..+|+
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 80 AALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELA--DWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHh--cCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 111 00000 02457899999999997554 4466677777788888888
Q ss_pred eeCCCCCC-Chhhhcccceeeec----CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 020071 147 ACNVSSKI-IEPIQSRCAIVRFS----RLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQA 215 (331)
Q Consensus 147 ~~~~~~~l-~~~l~sr~~~i~~~----~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~ 215 (331)
++.....+ ...++-+.....+. +++.+|...++... .|..++++.+..+.+.++|++--+.-....
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~---~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~ 228 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQR---LSSPIEAAESSRLCDDVEGWATALQLIALS 228 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCChHHHHHHHHHH
Confidence 87653333 23333334444444 99999999998764 356789999999999999999766544433
No 250
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.87 E-value=3.6e-07 Score=76.88 Aligned_cols=139 Identities=19% Similarity=0.201 Sum_probs=92.5
Q ss_pred HHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCc
Q 020071 33 AVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKH 112 (331)
Q Consensus 33 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~ 112 (331)
....+..++.... .-.++||+|+|||..++.+++.+ +..++.+|+.+..+...+..++.......
T Consensus 21 ~~~~l~~al~~~~--~~~~~GpagtGKtetik~La~~l-----G~~~~vfnc~~~~~~~~l~ril~G~~~~G-------- 85 (231)
T PF12774_consen 21 CFLTLTQALSLNL--GGALSGPAGTGKTETIKDLARAL-----GRFVVVFNCSEQMDYQSLSRILKGLAQSG-------- 85 (231)
T ss_dssp HHHHHHHHHCTTT--EEEEESSTTSSHHHHHHHHHHCT-----T--EEEEETTSSS-HHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHhccCC--CCCCcCCCCCCchhHHHHHHHHh-----CCeEEEecccccccHHHHHHHHHHHhhcC--------
Confidence 4445555665433 24789999999999999999999 88999999999888888888888877764
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHH--------------------hcCCcEEEEeeCC----CCCCChhhhcccceeeec
Q 020071 113 KVVVLDEADSMTAGAQQALRRTMEI--------------------YSNSTRFALACNV----SSKIIEPIQSRCAIVRFS 168 (331)
Q Consensus 113 ~vviide~d~l~~~~~~~Ll~~le~--------------------~~~~~~~I~~~~~----~~~l~~~l~sr~~~i~~~ 168 (331)
-.+.+||+++++.+....+-..+.. ..+++.+.++.|. ...+++.+++-+..+.+.
T Consensus 86 aW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRpvam~ 165 (231)
T PF12774_consen 86 AWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRPVAMM 165 (231)
T ss_dssp -EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEEEE--
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhheeEEe
Confidence 3899999999998765555443331 1134445555553 368999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCC
Q 020071 169 RLSDEEILSRLMVVVQEEKVP 189 (331)
Q Consensus 169 ~~~~~~~~~~l~~~~~~~~~~ 189 (331)
.||...+.+.+ +-..|+.
T Consensus 166 ~PD~~~I~ei~---L~s~GF~ 183 (231)
T PF12774_consen 166 VPDLSLIAEIL---LLSQGFK 183 (231)
T ss_dssp S--HHHHHHHH---HHCCCTS
T ss_pred CCCHHHHHHHH---HHHcCch
Confidence 99866665554 3355654
No 251
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.87 E-value=2.4e-07 Score=86.16 Aligned_cols=175 Identities=16% Similarity=0.201 Sum_probs=116.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcccC----------CCCCCceEEEEe
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVT----------LPPGKHKVVVLD 118 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~----------~~~~~~~vviid 118 (331)
+++.|++|+||..+++++.+... ...+|+.+||... ....+.+.+-.+....++ +.....+.+|+|
T Consensus 339 vll~GEtGtGKe~laraiH~~s~---~~gpfvAvNCaAi-p~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFld 414 (606)
T COG3284 339 VLLQGETGTGKEVLARAIHQNSE---AAGPFVAVNCAAI-PEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLD 414 (606)
T ss_pred eEecCCcchhHHHHHHHHHhccc---ccCCeEEEEeccc-hHHhhhHHHhccCccccccchhccccccceecCCCccHHH
Confidence 99999999999999999998763 3567899998765 333344433322222222 113568899999
Q ss_pred CCCCCCHHHHHHHHHHHHHh----------cCCcEEEEeeCCC-------CCCChhhhccc--ceeeecCCCHH-HHHHH
Q 020071 119 EADSMTAGAQQALRRTMEIY----------SNSTRFALACNVS-------SKIIEPIQSRC--AIVRFSRLSDE-EILSR 178 (331)
Q Consensus 119 e~d~l~~~~~~~Ll~~le~~----------~~~~~~I~~~~~~-------~~l~~~l~sr~--~~i~~~~~~~~-~~~~~ 178 (331)
|+..|+-..|..|+++|++. +-++++|.+|+.. .++-..+--|. .++.++|+.+. +....
T Consensus 415 eIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~ 494 (606)
T COG3284 415 EIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPL 494 (606)
T ss_pred HhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcCeeeccCchhcccccHHH
Confidence 99999999999999999962 2345677666542 23334444443 45677777652 22222
Q ss_pred HHHHHHh---cCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHh--hCCCccchhh
Q 020071 179 LMVVVQE---EKVPYVPEGLEAIIFTA-DGDMRQALNNLQATY--SGFRFVNQEN 227 (331)
Q Consensus 179 l~~~~~~---~~~~i~~~~~~~l~~~~-~g~~r~~~~~l~~~~--~~~~~i~~~~ 227 (331)
|.++..+ ..+.+++++...|..+. .||+|++.+.++.++ ..++.|...+
T Consensus 495 l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~g~~~~~d 549 (606)
T COG3284 495 LDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSDGGRIRVSD 549 (606)
T ss_pred HHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCCCeeEccc
Confidence 3333332 45789999988877654 899999999999875 3334344333
No 252
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=6e-09 Score=93.73 Aligned_cols=114 Identities=25% Similarity=0.292 Sum_probs=71.7
Q ss_pred CCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEe------ecCCCC------
Q 020071 21 PTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMEL------NASDDR------ 88 (331)
Q Consensus 21 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~------~~~~~~------ 88 (331)
...|.|++||+.+++.+.-....|. |++|+||||+|||.+|+.+...+..-... ..+++ .+....
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAGgH--nLl~~GpPGtGKTmla~Rl~~lLPpls~~-E~lE~s~I~s~~g~~~~~~~~~~ 251 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAGGH--NLLLVGPPGTGKTMLASRLPGLLPPLSIP-EALEVSAIHSLAGDLHEGCPLKI 251 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhcCC--cEEEecCCCCchHHhhhhhcccCCCCChH-HHHHHHHHhhhcccccccCccce
Confidence 3489999999999999999988887 69999999999999999998776431100 00000 000000
Q ss_pred --------ChHhHHHHHHHHHh-cccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHH
Q 020071 89 --------GIDVVRNKIKMFAQ-KKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEI 137 (331)
Q Consensus 89 --------~~~~i~~~i~~~~~-~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~ 137 (331)
.......++..... .+.-..-+.++|+|+||+-.+.....++|..=||+
T Consensus 252 ~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~ 309 (490)
T COG0606 252 HRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLEN 309 (490)
T ss_pred eCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCcccc
Confidence 00011111111000 00000124688999999999998888888888874
No 253
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.84 E-value=1.1e-07 Score=88.67 Aligned_cols=143 Identities=20% Similarity=0.222 Sum_probs=88.3
Q ss_pred ccccCHHHHHHHHHHHHcC---------CC---CeEEEeCCCCccHHHHHHHHHHHhcCCCC----CCceEEeecCCCCC
Q 020071 26 DIVGNLDAVARLGIIARDG---------NM---PNLILAGPPGTGKTTSILALAHELLGPNY----REAVMELNASDDRG 89 (331)
Q Consensus 26 ~~ig~~~~~~~l~~~l~~~---------~~---~~~ll~G~~G~GKt~la~~l~~~l~~~~~----~~~~~~~~~~~~~~ 89 (331)
.+.|++..++-+.-.+-+| +. -|+||+|.||+|||.+.+.+++.+....+ +..-+-+...-...
T Consensus 430 sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd 509 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKD 509 (804)
T ss_pred hhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEec
Confidence 4566777766444333222 11 14899999999999999999998753211 11111111100000
Q ss_pred hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHH-------------hcCCcEEEEeeCCCC----
Q 020071 90 IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEI-------------YSNSTRFALACNVSS---- 152 (331)
Q Consensus 90 ~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~-------------~~~~~~~I~~~~~~~---- 152 (331)
. +-++.+.+... +--++.+++.|||+|+|+......|++.||. .+..+.++.++|...
T Consensus 510 ~-dtkqlVLesGA----LVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skyn 584 (804)
T KOG0478|consen 510 P-DTRQLVLESGA----LVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYN 584 (804)
T ss_pred C-ccceeeeecCc----EEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCC
Confidence 0 11111111111 1135789999999999999999999999994 245677888887521
Q ss_pred ---------CCChhhhccccee--eecCCCHH
Q 020071 153 ---------KIIEPIQSRCAIV--RFSRLSDE 173 (331)
Q Consensus 153 ---------~l~~~l~sr~~~i--~~~~~~~~ 173 (331)
.++++|.|||..+ -+.++++.
T Consensus 585 p~k~i~eNI~LpptLLSRFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 585 PNKSIIENINLPPTLLSRFDLIFLLLDKPDER 616 (804)
T ss_pred CCCchhhccCCChhhhhhhcEEEEEecCcchh
Confidence 4789999999765 56666654
No 254
>PF05729 NACHT: NACHT domain
Probab=98.84 E-value=4.5e-08 Score=78.34 Aligned_cols=136 Identities=17% Similarity=0.228 Sum_probs=80.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCC---ce-EEeecCCCCCh---HhHHHHHHHHHhccc---------CCCCCCc
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYRE---AV-MELNASDDRGI---DVVRNKIKMFAQKKV---------TLPPGKH 112 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~---~~-~~~~~~~~~~~---~~i~~~i~~~~~~~~---------~~~~~~~ 112 (331)
++++|++|+|||++++.++..+....... .+ +.+........ ..+.+.+........ .....++
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKR 82 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCc
Confidence 69999999999999999999886554322 12 22222221111 122222211111000 0013457
Q ss_pred eEEEEeCCCCCCHHHH--------HHHHHHHHH-hcCCcEEEEeeCCCCC-CChhhhcccceeeecCCCHHHHHHHHHHH
Q 020071 113 KVVVLDEADSMTAGAQ--------QALRRTMEI-YSNSTRFALACNVSSK-IIEPIQSRCAIVRFSRLSDEEILSRLMVV 182 (331)
Q Consensus 113 ~vviide~d~l~~~~~--------~~Ll~~le~-~~~~~~~I~~~~~~~~-l~~~l~sr~~~i~~~~~~~~~~~~~l~~~ 182 (331)
-++|||.+|.+..... ..|..++.. .++++.++++++.... -..........+.+.|++++++.+++++.
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLRKY 162 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHHHH
Confidence 7999999999976332 244456655 4567888888764322 02222223367899999999999999886
Q ss_pred HH
Q 020071 183 VQ 184 (331)
Q Consensus 183 ~~ 184 (331)
++
T Consensus 163 f~ 164 (166)
T PF05729_consen 163 FS 164 (166)
T ss_pred hh
Confidence 53
No 255
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.82 E-value=1.9e-08 Score=93.44 Aligned_cols=151 Identities=23% Similarity=0.297 Sum_probs=96.7
Q ss_pred CCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeec------C----------
Q 020071 22 TKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNA------S---------- 85 (331)
Q Consensus 22 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~------~---------- 85 (331)
..|.++.|+..+++.+.-.+..|. +++|.||+|+|||++++.+...+...... ..+++.. .
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~~G~--~llliG~~GsGKTtLak~L~gllpp~~g~-e~le~~~i~s~~g~~~~~~~~~~r 264 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAAGGH--NLLLIGPPGTGKTMLASRINGLLPDLSNE-EALESAAILSLVNAESVQKQWRQR 264 (506)
T ss_pred cCeEEEECcHHHHhhhheeccCCc--EEEEECCCCCcHHHHHHHHhccCCCCCCc-EEEecchhhhhhccccccCCcCCC
Confidence 478889999998888766666554 68999999999999999998876422111 1111110 0
Q ss_pred CCCCh---HhHHHHHHHH-HhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHH-------------hcCCcEEEEee
Q 020071 86 DDRGI---DVVRNKIKMF-AQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEI-------------YSNSTRFALAC 148 (331)
Q Consensus 86 ~~~~~---~~i~~~i~~~-~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~-------------~~~~~~~I~~~ 148 (331)
..... -....++..- ...+-.+....+.++++||++.++...++.|++.||+ .+.++++|.++
T Consensus 265 Pfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~ 344 (506)
T PRK09862 265 PFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAM 344 (506)
T ss_pred CccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEee
Confidence 00000 0000111000 0001111245688999999999999999999999974 24567888888
Q ss_pred CCCC---------------------CCChhhhcccce-eeecCCCHHHH
Q 020071 149 NVSS---------------------KIIEPIQSRCAI-VRFSRLSDEEI 175 (331)
Q Consensus 149 ~~~~---------------------~l~~~l~sr~~~-i~~~~~~~~~~ 175 (331)
|... ++..++.+|+.. +.+++++.+++
T Consensus 345 NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l 393 (506)
T PRK09862 345 NPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGIL 393 (506)
T ss_pred cCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHH
Confidence 7632 466788899866 57887776643
No 256
>PRK06526 transposase; Provisional
Probab=98.82 E-value=1.2e-08 Score=87.25 Aligned_cols=97 Identities=18% Similarity=0.277 Sum_probs=59.0
Q ss_pred CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhc-cc---CCCCCCceEEEEeCCCC
Q 020071 47 PNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQK-KV---TLPPGKHKVVVLDEADS 122 (331)
Q Consensus 47 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~~---~~~~~~~~vviide~d~ 122 (331)
.+++|+||+|+|||+++.+++..+...+....+ ++.. .+-+.+...... .. -....+..++||||++.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f--~t~~------~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~ 170 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF--ATAA------QWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGY 170 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh--hhHH------HHHHHHHHHHhcCcHHHHHHHhccCCEEEEccccc
Confidence 369999999999999999999887544332222 2111 111111100000 00 00013457999999997
Q ss_pred CC--HHHHHHHHHHHHHhcCCcEEEEeeCCC
Q 020071 123 MT--AGAQQALRRTMEIYSNSTRFALACNVS 151 (331)
Q Consensus 123 l~--~~~~~~Ll~~le~~~~~~~~I~~~~~~ 151 (331)
.. ...++.|..+++....+..+|+++|.+
T Consensus 171 ~~~~~~~~~~L~~li~~r~~~~s~IitSn~~ 201 (254)
T PRK06526 171 IPFEPEAANLFFQLVSSRYERASLIVTSNKP 201 (254)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 74 666778888887644445688888864
No 257
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.81 E-value=3.5e-08 Score=83.55 Aligned_cols=127 Identities=16% Similarity=0.238 Sum_probs=77.8
Q ss_pred hhhcCCCCCCcccc----CHHHHHHHHHHHHcCC--CCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCC
Q 020071 16 VEKYRPTKVCDIVG----NLDAVARLGIIARDGN--MPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRG 89 (331)
Q Consensus 16 ~~~~~p~~~~~~ig----~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 89 (331)
.+.|++.+|+++.. +..++..+.+++.+.. ..+++|+|++|+|||+++.+++..+...+ ..++.++..+..
T Consensus 63 ~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g--~~v~~it~~~l~- 139 (244)
T PRK07952 63 RPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG--KSVLIITVADIM- 139 (244)
T ss_pred CccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEEHHHHH-
Confidence 45677889998762 3445666666665422 23589999999999999999999986543 334444332210
Q ss_pred hHhHHHHH-------HHHHhcccCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHHHh-cCCcEEEEeeCCC
Q 020071 90 IDVVRNKI-------KMFAQKKVTLPPGKHKVVVLDEADSMT--AGAQQALRRTMEIY-SNSTRFALACNVS 151 (331)
Q Consensus 90 ~~~i~~~i-------~~~~~~~~~~~~~~~~vviide~d~l~--~~~~~~Ll~~le~~-~~~~~~I~~~~~~ 151 (331)
..+.... ...... .....++||||++... .-....|..+++.. ......|++||..
T Consensus 140 -~~l~~~~~~~~~~~~~~l~~-----l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 140 -SAMKDTFSNSETSEEQLLND-----LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSN 205 (244)
T ss_pred -HHHHHHHhhccccHHHHHHH-----hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 1111100 000000 1246799999997764 33455677788753 3467788888864
No 258
>PRK04132 replication factor C small subunit; Provisional
Probab=98.81 E-value=3.1e-09 Score=103.74 Aligned_cols=51 Identities=51% Similarity=0.972 Sum_probs=48.4
Q ss_pred CCCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHH
Q 020071 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTT 61 (331)
Q Consensus 11 ~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~ 61 (331)
++.||.+||||++|+|++||+++++.|+.+++.+..||++|+||||+||..
T Consensus 5 ~~~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h~l~~g~~g~~~cl 55 (846)
T PRK04132 5 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCL 55 (846)
T ss_pred hcccHHHhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEECCCCCCccc
Confidence 567999999999999999999999999999999999999999999999963
No 259
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.78 E-value=1.9e-07 Score=72.21 Aligned_cols=95 Identities=29% Similarity=0.334 Sum_probs=59.6
Q ss_pred CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCC--------------------hHhHHHHHHHHHhcccC
Q 020071 47 PNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRG--------------------IDVVRNKIKMFAQKKVT 106 (331)
Q Consensus 47 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--------------------~~~i~~~i~~~~~~~~~ 106 (331)
.+++|+||+|+|||++++.++..+.... ..++.+++..... ....+.....+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALAR----- 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHH-----
Confidence 3589999999999999999999986543 2355554432211 112222222111
Q ss_pred CCCCCceEEEEeCCCCCCHHHHHHHHH--------HHHHhcCCcEEEEeeCC
Q 020071 107 LPPGKHKVVVLDEADSMTAGAQQALRR--------TMEIYSNSTRFALACNV 150 (331)
Q Consensus 107 ~~~~~~~vviide~d~l~~~~~~~Ll~--------~le~~~~~~~~I~~~~~ 150 (331)
.....+++|||++.+.......... ..........+|+++|.
T Consensus 76 --~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 76 --KLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred --hcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 1125899999999998766555433 33345567778888875
No 260
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.77 E-value=4.3e-08 Score=84.76 Aligned_cols=145 Identities=23% Similarity=0.314 Sum_probs=86.5
Q ss_pred HHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhc----ccCCCCCC
Q 020071 36 RLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQK----KVTLPPGK 111 (331)
Q Consensus 36 ~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~~~~~ 111 (331)
.+..++..+. ++||+||+|+|||.+++.+.+.+.... .....++.+.......+.+.++...+. .+..+.++
T Consensus 25 ll~~l~~~~~--pvLl~G~~GtGKT~li~~~l~~l~~~~--~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k 100 (272)
T PF12775_consen 25 LLDLLLSNGR--PVLLVGPSGTGKTSLIQNFLSSLDSDK--YLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGK 100 (272)
T ss_dssp HHHHHHHCTE--EEEEESSTTSSHHHHHHHHHHCSTTCC--EEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSS
T ss_pred HHHHHHHcCC--cEEEECCCCCchhHHHHhhhccCCccc--cceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCc
Confidence 3455555554 599999999999999999888764321 123345554432333333333222211 11223456
Q ss_pred ceEEEEeCCCCCCH------HHHHHHHHHHHHhc------------CCcEEEEeeCCC---CCCChhhhcccceeeecCC
Q 020071 112 HKVVVLDEADSMTA------GAQQALRRTMEIYS------------NSTRFALACNVS---SKIIEPIQSRCAIVRFSRL 170 (331)
Q Consensus 112 ~~vviide~d~l~~------~~~~~Ll~~le~~~------------~~~~~I~~~~~~---~~l~~~l~sr~~~i~~~~~ 170 (331)
+-|++|||++.-.. ...+-|+.+++... .++.+|.+++.. ..+.+.+.+.+.++.+.+|
T Consensus 101 ~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~~~~~p 180 (272)
T PF12775_consen 101 KLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNILNIPYP 180 (272)
T ss_dssp EEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEEE----
T ss_pred EEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEEEecCC
Confidence 77999999866543 23566667776311 356677777653 2467888888999999999
Q ss_pred CHHHHHHHHHHHHH
Q 020071 171 SDEEILSRLMVVVQ 184 (331)
Q Consensus 171 ~~~~~~~~l~~~~~ 184 (331)
+.+.+..+...+..
T Consensus 181 ~~~sl~~If~~il~ 194 (272)
T PF12775_consen 181 SDESLNTIFSSILQ 194 (272)
T ss_dssp TCCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHh
Confidence 99999888877654
No 261
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.7e-08 Score=90.02 Aligned_cols=156 Identities=18% Similarity=0.182 Sum_probs=98.4
Q ss_pred CCCCe---EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC------CChHhHHHHHHHHHhcccC-CCCCCce
Q 020071 44 GNMPN---LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD------RGIDVVRNKIKMFAQKKVT-LPPGKHK 113 (331)
Q Consensus 44 ~~~~~---~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~------~~~~~i~~~i~~~~~~~~~-~~~~~~~ 113 (331)
-..+| +|||||||||||.+|+.+.+-++...+. -+|++.. .+.+.++.+...+.+.--. -..++-.
T Consensus 251 lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePK----IVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLH 326 (744)
T KOG0741|consen 251 LGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPK----IVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLH 326 (744)
T ss_pred cCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCc----ccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCce
Confidence 34556 7999999999999999999999764332 1233321 2345667666554432111 1145568
Q ss_pred EEEEeCCCCCC-------------HHHHHHHHHHHHH--hcCCcEEEEeeCCCCCCChhhhc--ccce-eeecCCCHHHH
Q 020071 114 VVVLDEADSMT-------------AGAQQALRRTMEI--YSNSTRFALACNVSSKIIEPIQS--RCAI-VRFSRLSDEEI 175 (331)
Q Consensus 114 vviide~d~l~-------------~~~~~~Ll~~le~--~~~~~~~I~~~~~~~~l~~~l~s--r~~~-i~~~~~~~~~~ 175 (331)
+||+||+|.+. ....|.|+.-|+. .-.+..+|..||....+..++.+ |+.+ +++.-|++.-.
T Consensus 327 IIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gR 406 (744)
T KOG0741|consen 327 IIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGR 406 (744)
T ss_pred EEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCc
Confidence 99999998663 3457888888773 33577788889988888888877 3433 46777777655
Q ss_pred HHHHH---HHHHhcCCCCCHHHHHHHHHhcC
Q 020071 176 LSRLM---VVVQEEKVPYVPEGLEAIIFTAD 203 (331)
Q Consensus 176 ~~~l~---~~~~~~~~~i~~~~~~~l~~~~~ 203 (331)
.++++ ++.+..+.--++-.++.|+.++.
T Consensus 407 lQIl~IHT~rMre~~~l~~dVdl~elA~lTK 437 (744)
T KOG0741|consen 407 LQILKIHTKRMRENNKLSADVDLKELAALTK 437 (744)
T ss_pred eEEEEhhhhhhhhcCCCCCCcCHHHHHHHhc
Confidence 55443 33333343223334666776653
No 262
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.76 E-value=7.4e-08 Score=89.00 Aligned_cols=135 Identities=24% Similarity=0.274 Sum_probs=82.5
Q ss_pred CCccccCHHHHHHHHHHHHcC------------CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeec--CCCCC
Q 020071 24 VCDIVGNLDAVARLGIIARDG------------NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNA--SDDRG 89 (331)
Q Consensus 24 ~~~~ig~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~--~~~~~ 89 (331)
|..+.||+.++.-+.-.+-+| .-.|+++.|.||+||+.+.++.+.-+.. -++..+ +...|
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR------~vYtsGkaSSaAG 417 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPR------SVYTSGKASSAAG 417 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCc------ceEecCccccccc
Confidence 446778888887554444332 1136999999999999999998876532 122211 11111
Q ss_pred hH--hHHHH-HHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh-------------cCCcEEEEeeCCCC-
Q 020071 90 ID--VVRNK-IKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY-------------SNSTRFALACNVSS- 152 (331)
Q Consensus 90 ~~--~i~~~-i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~-------------~~~~~~I~~~~~~~- 152 (331)
.. ..++. -.++.-.+-.+.-++.+++.|||+|+|....+.++++.||.. +..+.+|.++|+..
T Consensus 418 LTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~G 497 (764)
T KOG0480|consen 418 LTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGG 497 (764)
T ss_pred ceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCC
Confidence 00 00000 000111111112467899999999999999999999999953 34556777777632
Q ss_pred ------------CCChhhhcccce
Q 020071 153 ------------KIIEPIQSRCAI 164 (331)
Q Consensus 153 ------------~l~~~l~sr~~~ 164 (331)
++.++|.||+..
T Consensus 498 hYdR~ktl~eNi~msApimSRFDL 521 (764)
T KOG0480|consen 498 HYDRKKTLRENINMSAPIMSRFDL 521 (764)
T ss_pred ccccccchhhhcCCCchhhhhhcE
Confidence 456888899754
No 263
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.74 E-value=6.7e-07 Score=92.74 Aligned_cols=185 Identities=16% Similarity=0.125 Sum_probs=108.8
Q ss_pred CCCCCccccCHHHHHHHHHHHHcCC--CCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEe---ecCC---------
Q 020071 21 PTKVCDIVGNLDAVARLGIIARDGN--MPNLILAGPPGTGKTTSILALAHELLGPNYREAVMEL---NASD--------- 86 (331)
Q Consensus 21 p~~~~~~ig~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~---~~~~--------- 86 (331)
+..+++++|.+..++.+..++.-+. ...+-++|++|+||||+|++++..+........++.- ....
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred CcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhccccccc
Confidence 3468899999999999988875432 2227999999999999999998887543222111110 0000
Q ss_pred CCC--hHhHHHHHHHHHh-------------cccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC
Q 020071 87 DRG--IDVVRNKIKMFAQ-------------KKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVS 151 (331)
Q Consensus 87 ~~~--~~~i~~~i~~~~~-------------~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~ 151 (331)
... .....+.+..... ..+ .+++-++|+||++.. ...+.|....+....+.++|+||.+.
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L---~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERL---KHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDK 334 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHH---hCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcH
Confidence 000 0000111111111 011 345678999998653 34455554444334567788888754
Q ss_pred CCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHhcCCCHHHHHHH
Q 020071 152 SKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV--PEGLEAIIFTADGDMRQALNN 212 (331)
Q Consensus 152 ~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~--~~~~~~l~~~~~g~~r~~~~~ 212 (331)
.-+.. . .-..++.+..++.++..+++.+.+.+....-+ .+....++++++|-|-.+.-.
T Consensus 335 ~vl~~-~-~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vl 395 (1153)
T PLN03210 335 HFLRA-H-GIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVL 395 (1153)
T ss_pred HHHHh-c-CCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 32211 0 01256888999999999999887755432211 234677889999887654433
No 264
>PF14516 AAA_35: AAA-like domain
Probab=98.73 E-value=1e-05 Score=72.37 Aligned_cols=230 Identities=15% Similarity=0.138 Sum_probs=130.1
Q ss_pred cccCHHHHHHHHHHHHc-CCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC---CChHhHHHHH-----
Q 020071 27 IVGNLDAVARLGIIARD-GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD---RGIDVVRNKI----- 97 (331)
Q Consensus 27 ~ig~~~~~~~l~~~l~~-~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~---~~~~~i~~~i----- 97 (331)
.+.++.+-+.+.+.+.+ |. .+.+.||..+|||++...+.+.+..+++...++.+...+. ...+.+-..+
T Consensus 13 Yi~R~~~e~~~~~~i~~~G~--~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~ 90 (331)
T PF14516_consen 13 YIERPPAEQECYQEIVQPGS--YIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEIS 90 (331)
T ss_pred ccCchHHHHHHHHHHhcCCC--EEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHH
Confidence 45666677777777766 55 4799999999999999999998876644333333332111 1111100000
Q ss_pred ---------HH--------------HHhcccCCCCCCceEEEEeCCCCCCH--HHHHHHHHHH----HHh-----cCCcE
Q 020071 98 ---------KM--------------FAQKKVTLPPGKHKVVVLDEADSMTA--GAQQALRRTM----EIY-----SNSTR 143 (331)
Q Consensus 98 ---------~~--------------~~~~~~~~~~~~~~vviide~d~l~~--~~~~~Ll~~l----e~~-----~~~~~ 143 (331)
.. +.+.-.-....++-|++|||+|.+.. .....++..+ +.. ....+
T Consensus 91 ~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~ 170 (331)
T PF14516_consen 91 RQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLR 170 (331)
T ss_pred HHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEE
Confidence 00 00000000024578999999998864 2233344333 321 23455
Q ss_pred EEEeeCCCCCCChhh----hcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 020071 144 FALACNVSSKIIEPI----QSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSG 219 (331)
Q Consensus 144 ~I~~~~~~~~l~~~l----~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 219 (331)
+|++......+.... -+-+..+.+++.+.+|+...+++ .+..+++..++.|...++|.|.-+...+..+...
T Consensus 171 li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~----~~~~~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 171 LILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQR----YGLEFSQEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred EEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHh----hhccCCHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 666543222121111 13466789999999999887655 4667888889999999999998877777776543
Q ss_pred CCccchhhhhhhc---CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 020071 220 FRFVNQENVFKVC---DQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLG 266 (331)
Q Consensus 220 ~~~i~~~~v~~~~---~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g 266 (331)
.++.+.+.+.. .....+++..+++.+. +..+....+..++..+
T Consensus 247 --~~~~~~l~~~a~~~~~~~~~hL~~l~~~L~--~~~~L~~~~~~il~~~ 292 (331)
T PF14516_consen 247 --QITLEQLLEEAITDNGIYNDHLDRLLDRLQ--QNPELLEAYQQILFSG 292 (331)
T ss_pred --cCcHHHHHHHHHHhcccHHHHHHHHHHHHc--cCHHHHHHHHHHHhCC
Confidence 34444332211 1122234445555441 2225555665665544
No 265
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.73 E-value=3.7e-08 Score=90.61 Aligned_cols=230 Identities=19% Similarity=0.197 Sum_probs=126.4
Q ss_pred ccccCHHHHHHHHHHHHcCCC------------CeEEEeCCCCccHHHHHHHHHHHhcCC----CCCCceEEeecCCCCC
Q 020071 26 DIVGNLDAVARLGIIARDGNM------------PNLILAGPPGTGKTTSILALAHELLGP----NYREAVMELNASDDRG 89 (331)
Q Consensus 26 ~~ig~~~~~~~l~~~l~~~~~------------~~~ll~G~~G~GKt~la~~l~~~l~~~----~~~~~~~~~~~~~~~~ 89 (331)
.+.||..++..+.-.+-+|.. -|+||+|.||+||+.+.+..++..... +.+...+-+.+.-..
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~K- 528 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRK- 528 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEee-
Confidence 467899988887777655321 158999999999999999988865321 111111111111000
Q ss_pred hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh-------------cCCcEEEEeeCCC-----
Q 020071 90 IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY-------------SNSTRFALACNVS----- 151 (331)
Q Consensus 90 ~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~-------------~~~~~~I~~~~~~----- 151 (331)
+. .-.+|.-....+--++++|++|||+|+|+......+.+.||.. ...|.+|.++|..
T Consensus 529 -dP---vtrEWTLEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~ 604 (854)
T KOG0477|consen 529 -DP---VTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYN 604 (854)
T ss_pred -CC---ccceeeeccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccC
Confidence 00 0011111111111457899999999999987777777777642 3567788888762
Q ss_pred ------C--CCChhhhccccee-----eecCCCHHHHHHHHHH-HHHhc-------CC----------CCCHHHHHHHHH
Q 020071 152 ------S--KIIEPIQSRCAIV-----RFSRLSDEEILSRLMV-VVQEE-------KV----------PYVPEGLEAIIF 200 (331)
Q Consensus 152 ------~--~l~~~l~sr~~~i-----~~~~~~~~~~~~~l~~-~~~~~-------~~----------~i~~~~~~~l~~ 200 (331)
+ .+..++.||+.++ .+.|..++.+.+++-. ..+.+ ++ .++.+++...+.
T Consensus 605 ~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~ 684 (854)
T KOG0477|consen 605 PSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYII 684 (854)
T ss_pred CccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHHHHHHHH
Confidence 1 5678899997664 5666666666666533 22211 11 144455444333
Q ss_pred h---------cCCCHHHHHHHHHH-----HhhCCCccchhhhhhhcCCCCHHHHHHHHHHHHcCCHHHHHHHHH
Q 020071 201 T---------ADGDMRQALNNLQA-----TYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLK 260 (331)
Q Consensus 201 ~---------~~g~~r~~~~~l~~-----~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~ 260 (331)
+ ..+|..+.-+..-. .+.++-.||..++..++.....-.-..+-+.+...|...|+..+.
T Consensus 685 yar~~v~PkL~q~d~~K~s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~l 758 (854)
T KOG0477|consen 685 YAREKVRPKLNQMDMDKISSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVML 758 (854)
T ss_pred HHHHhcccccccccHHHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHH
Confidence 3 23444443333322 235556788888877654332222222333333445555555443
No 266
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.72 E-value=2.8e-08 Score=80.39 Aligned_cols=93 Identities=28% Similarity=0.389 Sum_probs=57.5
Q ss_pred CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC-------CChHhHHHHHHHHHhcccCCCCCCceEEEEeC
Q 020071 47 PNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD-------RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDE 119 (331)
Q Consensus 47 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-------~~~~~i~~~i~~~~~~~~~~~~~~~~vviide 119 (331)
.+++|+||+|+|||++|.++++.+...+.. +..++..+. .......+.++.+. +..++||||
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~--v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~---------~~dlLilDD 116 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYS--VLFITASDLLDELKQSRSDGSYEELLKRLK---------RVDLLILDD 116 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH---------TSSCEEEET
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcc--eeEeecCceeccccccccccchhhhcCccc---------cccEecccc
Confidence 359999999999999999999987654433 333332211 00011222233222 356999999
Q ss_pred CCCC--CHHHHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 120 ADSM--TAGAQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 120 ~d~l--~~~~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
+... +....+.|.++++....+...|++||.
T Consensus 117 lG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~ 149 (178)
T PF01695_consen 117 LGYEPLSEWEAELLFEIIDERYERKPTIITSNL 149 (178)
T ss_dssp CTSS---HHHHHCTHHHHHHHHHT-EEEEEESS
T ss_pred cceeeecccccccchhhhhHhhcccCeEeeCCC
Confidence 8765 455677788888765445578888885
No 267
>PRK06921 hypothetical protein; Provisional
Probab=98.71 E-value=1.2e-07 Score=81.68 Aligned_cols=101 Identities=18% Similarity=0.263 Sum_probs=59.9
Q ss_pred CCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCC---
Q 020071 46 MPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS--- 122 (331)
Q Consensus 46 ~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~--- 122 (331)
..+++|+|++|+|||+++.++++.+.... +..++.+...+. ...+...........- ......++||||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~~~l--~~~l~~~~~~~~~~~~--~~~~~dlLiIDDl~~~~~ 191 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPFVEG--FGDLKDDFDLLEAKLN--RMKKVEVLFIDDLFKPVN 191 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEHHHH--HHHHHHHHHHHHHHHH--HhcCCCEEEEeccccccC
Confidence 34599999999999999999999986431 233444443221 1122221111111000 023467999999944
Q ss_pred ----CCHHHHHHHHHHHHHhc-CCcEEEEeeCCC
Q 020071 123 ----MTAGAQQALRRTMEIYS-NSTRFALACNVS 151 (331)
Q Consensus 123 ----l~~~~~~~Ll~~le~~~-~~~~~I~~~~~~ 151 (331)
.+.-..+.|..+++... ....+|+++|..
T Consensus 192 g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~ 225 (266)
T PRK06921 192 GKPRATEWQIEQMYSVLNYRYLNHKPILISSELT 225 (266)
T ss_pred CCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 44555677888887543 345678888763
No 268
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=5.3e-07 Score=77.64 Aligned_cols=106 Identities=22% Similarity=0.297 Sum_probs=72.7
Q ss_pred CceEEEEeCCCCCCH------------HHHHHHHHHHHHhc----------CCcEEEEee----CCCCCCChhhhcccce
Q 020071 111 KHKVVVLDEADSMTA------------GAQQALRRTMEIYS----------NSTRFALAC----NVSSKIIEPIQSRCAI 164 (331)
Q Consensus 111 ~~~vviide~d~l~~------------~~~~~Ll~~le~~~----------~~~~~I~~~----~~~~~l~~~l~sr~~~ 164 (331)
..++|||||+|++.. ..|--|+.++|... .+..||.+. ..++.+.|.|.-|+.+
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 367999999998732 34667888887422 222333332 3478999999999865
Q ss_pred -eeecCCCHHHHHHHHHH-----------HHHhcC--CCCCHHHHHHHHHhcC--------CCHHHHHHHHHHH
Q 020071 165 -VRFSRLSDEEILSRLMV-----------VVQEEK--VPYVPEGLEAIIFTAD--------GDMRQALNNLQAT 216 (331)
Q Consensus 165 -i~~~~~~~~~~~~~l~~-----------~~~~~~--~~i~~~~~~~l~~~~~--------g~~r~~~~~l~~~ 216 (331)
+++.+++.+++.++|.. ..+-+| +.+++++++.|++.+- =-.|++...++++
T Consensus 330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErl 403 (444)
T COG1220 330 RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERL 403 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHH
Confidence 79999999999888743 122344 4568999999987641 2356677777655
No 269
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.71 E-value=6.3e-08 Score=92.15 Aligned_cols=134 Identities=23% Similarity=0.294 Sum_probs=86.3
Q ss_pred ccccCHHHHHHHHHHHHcCCC------------CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeec--CCCCChH
Q 020071 26 DIVGNLDAVARLGIIARDGNM------------PNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNA--SDDRGID 91 (331)
Q Consensus 26 ~~ig~~~~~~~l~~~l~~~~~------------~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~--~~~~~~~ 91 (331)
.+.|++.+++.+.-++-+|.. -|+|+.|.||+|||.+.+.+.+.... . +..++ +...|..
T Consensus 287 sIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr-----~-vytsgkgss~~GLT 360 (682)
T COG1241 287 SIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPR-----G-VYTSGKGSSAAGLT 360 (682)
T ss_pred cccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCc-----e-EEEccccccccCce
Confidence 677999988876655543210 26899999999999999999987732 1 11221 1111100
Q ss_pred --hHHHHH-HHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh-------------cCCcEEEEeeCCCC---
Q 020071 92 --VVRNKI-KMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY-------------SNSTRFALACNVSS--- 152 (331)
Q Consensus 92 --~i~~~i-~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~-------------~~~~~~I~~~~~~~--- 152 (331)
..++.. .+|.-.+..+-.++++|+.|||+|+|+.....++...||.. +..|.+++++|...
T Consensus 361 Aav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gry 440 (682)
T COG1241 361 AAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRY 440 (682)
T ss_pred eEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcC
Confidence 011111 01111111122457899999999999999999999999953 34556777777642
Q ss_pred ----------CCChhhhccccee
Q 020071 153 ----------KIIEPIQSRCAIV 165 (331)
Q Consensus 153 ----------~l~~~l~sr~~~i 165 (331)
.+++++.||+..+
T Consensus 441 d~~~~~~enI~l~~~lLSRFDLi 463 (682)
T COG1241 441 DPKKTVAENINLPAPLLSRFDLI 463 (682)
T ss_pred CCCCCHHHhcCCChhHHhhCCee
Confidence 4779999998765
No 270
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.68 E-value=1.9e-07 Score=82.70 Aligned_cols=129 Identities=21% Similarity=0.261 Sum_probs=75.3
Q ss_pred HHHHHHHHHHcC--CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHH-H---HHH--hcc
Q 020071 33 AVARLGIIARDG--NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKI-K---MFA--QKK 104 (331)
Q Consensus 33 ~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i-~---~~~--~~~ 104 (331)
++.....++.+. ...+++|+||+|+|||+++.++++.+...+ ..++.++..+. .+.+.... . ... ...
T Consensus 168 ~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~~~l--~~~l~~~~~~~~~~~~~~~~~ 243 (329)
T PRK06835 168 ILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTADEL--IEILREIRFNNDKELEEVYDL 243 (329)
T ss_pred HHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEHHHH--HHHHHHHHhccchhHHHHHHH
Confidence 344445555531 124599999999999999999999987553 34444443321 11111100 0 000 000
Q ss_pred cCCCCCCceEEEEeCCCCC--CHHHHHHHHHHHHHhc-CCcEEEEeeCCCC-----CCChhhhcc----cceeeecC
Q 020071 105 VTLPPGKHKVVVLDEADSM--TAGAQQALRRTMEIYS-NSTRFALACNVSS-----KIIEPIQSR----CAIVRFSR 169 (331)
Q Consensus 105 ~~~~~~~~~vviide~d~l--~~~~~~~Ll~~le~~~-~~~~~I~~~~~~~-----~l~~~l~sr----~~~i~~~~ 169 (331)
-.+..++||||++.. +...++.|..+++... ....+|++||... .+.+.+.|| +.++.|..
T Consensus 244 ----l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~SRL~~~~~~i~~~G 316 (329)
T PRK06835 244 ----LINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSRLLGNFTLLKFYG 316 (329)
T ss_pred ----hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHcCCEEEEecC
Confidence 124579999999544 5667788999988653 3466888887642 233455555 34455543
No 271
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.68 E-value=9.7e-07 Score=83.93 Aligned_cols=200 Identities=17% Similarity=0.150 Sum_probs=125.3
Q ss_pred CHHHHHHHHHHHHcC-CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC----CChHhHHHHHHHHHh--
Q 020071 30 NLDAVARLGIIARDG-NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD----RGIDVVRNKIKMFAQ-- 102 (331)
Q Consensus 30 ~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~----~~~~~i~~~i~~~~~-- 102 (331)
+++++..|.-..-+. .+..+++.|+.|++|+++++.+...+.. ..+|+.+..+.. .|.-++...+..-..
T Consensus 8 ~~~~~~Al~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~---~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~ 84 (584)
T PRK13406 8 WADAALAAALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPA---GTPLRRLPPGIADDRLLGGLDLAATLRAGRPVA 84 (584)
T ss_pred HHHHHHHHHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCC---CCCcccCCCCCcHHHccCCchHHhHhhcCCcCC
Confidence 444555444443344 5566999999999999999999998743 235554433221 222233333322111
Q ss_pred cccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh-------------cCCcEEEEeeCC---CCCCChhhhcccce-e
Q 020071 103 KKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY-------------SNSTRFALACNV---SSKIIEPIQSRCAI-V 165 (331)
Q Consensus 103 ~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~-------------~~~~~~I~~~~~---~~~l~~~l~sr~~~-i 165 (331)
.+--+....+.|+||||+..+++..++.|+..|++. |..+.+|.+.|. ...+.+.+..|+.. +
T Consensus 85 ~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v 164 (584)
T PRK13406 85 QRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHL 164 (584)
T ss_pred CCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEE
Confidence 111122456899999999999999999999999953 333444443221 24588999999754 5
Q ss_pred eecCCCHHHHH-------HHHHHHHHhcCCCCCHHHHHHHHHhc---CC-CHHHHHHHHHHH-----hhCCCccchhhhh
Q 020071 166 RFSRLSDEEIL-------SRLMVVVQEEKVPYVPEGLEAIIFTA---DG-DMRQALNNLQAT-----YSGFRFVNQENVF 229 (331)
Q Consensus 166 ~~~~~~~~~~~-------~~l~~~~~~~~~~i~~~~~~~l~~~~---~g-~~r~~~~~l~~~-----~~~~~~i~~~~v~ 229 (331)
.+.+++..+.. ++...+..-.++.++++.+++++..+ +- +.|..+..+..+ ..+...|+.++|.
T Consensus 165 ~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~ 244 (584)
T PRK13406 165 DLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLA 244 (584)
T ss_pred EcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 77776655432 22222222247889999988877654 32 567666666533 2577789999987
Q ss_pred hhc
Q 020071 230 KVC 232 (331)
Q Consensus 230 ~~~ 232 (331)
+++
T Consensus 245 ~Aa 247 (584)
T PRK13406 245 LAA 247 (584)
T ss_pred HHH
Confidence 754
No 272
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.68 E-value=2.2e-08 Score=76.96 Aligned_cols=101 Identities=25% Similarity=0.326 Sum_probs=60.0
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCC---CCCceEEeecCCCCChHhHHHHHHHHHhcccCC---------------CC
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPN---YREAVMELNASDDRGIDVVRNKIKMFAQKKVTL---------------PP 109 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~---------------~~ 109 (331)
+++++||+|+|||++++.+++.+.... ...+++.+++........+...+......+... ..
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~ 85 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDR 85 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHh
Confidence 479999999999999999999874210 023445554433222222222221111111100 01
Q ss_pred CCceEEEEeCCCCC-CHHHHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 110 GKHKVVVLDEADSM-TAGAQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 110 ~~~~vviide~d~l-~~~~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
.+..++||||+|.+ +.+..+.|..+++ ..++.+|+++++
T Consensus 86 ~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 86 RRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp CTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred cCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 22369999999999 8777888877776 566778887764
No 273
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=6.3e-07 Score=84.78 Aligned_cols=168 Identities=20% Similarity=0.235 Sum_probs=107.9
Q ss_pred cccCHHHHHHHHHHHHcC---------CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCC--hHhHHH
Q 020071 27 IVGNLDAVARLGIIARDG---------NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRG--IDVVRN 95 (331)
Q Consensus 27 ~ig~~~~~~~l~~~l~~~---------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~i~~ 95 (331)
.-+++..+..+...+.-. ..+.+|++|++|+|||++++++++++ +.++++++|.+... ......
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l-----g~h~~evdc~el~~~s~~~~et 477 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL-----GLHLLEVDCYELVAESASHTET 477 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh-----CCceEeccHHHHhhcccchhHH
Confidence 334555555555555432 22348999999999999999999999 88888888754311 111111
Q ss_pred HHHHHHhcccCCCCCCceEEEEeCCCCCCHH--------HHHHHHHHHH-----HhcCCcEEEEeeCCCCCCChhhhccc
Q 020071 96 KIKMFAQKKVTLPPGKHKVVVLDEADSMTAG--------AQQALRRTME-----IYSNSTRFALACNVSSKIIEPIQSRC 162 (331)
Q Consensus 96 ~i~~~~~~~~~~~~~~~~vviide~d~l~~~--------~~~~Ll~~le-----~~~~~~~~I~~~~~~~~l~~~l~sr~ 162 (331)
.+..+....- ....-|+++.++|-+..+ .+..+...+. ...+.+.||.+++..+.+++.+++-+
T Consensus 478 kl~~~f~~a~---~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f 554 (953)
T KOG0736|consen 478 KLQAIFSRAR---RCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLF 554 (953)
T ss_pred HHHHHHHHHh---hcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhh
Confidence 2222222111 345679999988877421 1223333333 12356778888889999999999986
Q ss_pred -ceeeecCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCC
Q 020071 163 -AIVRFSRLSDEEILSRLMVVVQEEKVPYVPE-GLEAIIFTADG 204 (331)
Q Consensus 163 -~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~~~g 204 (331)
..+.++-+++++..+|++....... ++++ ....+++.+.|
T Consensus 555 ~~ei~~~~lse~qRl~iLq~y~~~~~--~n~~v~~k~~a~~t~g 596 (953)
T KOG0736|consen 555 LHEIEVPALSEEQRLEILQWYLNHLP--LNQDVNLKQLARKTSG 596 (953)
T ss_pred hhhccCCCCCHHHHHHHHHHHHhccc--cchHHHHHHHHHhcCC
Confidence 5689999999999999999876554 3332 34455555543
No 274
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.65 E-value=3.4e-07 Score=92.52 Aligned_cols=146 Identities=21% Similarity=0.300 Sum_probs=104.0
Q ss_pred cCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcc---cCCC-------CCCc
Q 020071 43 DGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKK---VTLP-------PGKH 112 (331)
Q Consensus 43 ~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~---~~~~-------~~~~ 112 (331)
....| +|+.||..+|||+++..+++.. +..|+.+|-.... ...+-+..+.+.. .+++ ..++
T Consensus 886 ~~~fP-~LiQGpTSSGKTSMI~yla~~t-----ghkfVRINNHEHT---dlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G 956 (4600)
T COG5271 886 LSNFP-LLIQGPTSSGKTSMILYLARET-----GHKFVRINNHEHT---DLQEYIGTYVTDDDGSLSFKEGVLVEALRRG 956 (4600)
T ss_pred hcCCc-EEEecCCCCCcchHHHHHHHHh-----CccEEEecCcccc---hHHHHhhceeecCCCceeeehhHHHHHHhcC
Confidence 33444 9999999999999999999998 7778888754431 2223332222211 0011 1245
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHH--------------hcCCcEEEEeeCCC------CCCChhhhcccceeeecCCCH
Q 020071 113 KVVVLDEADSMTAGAQQALRRTMEI--------------YSNSTRFALACNVS------SKIIEPIQSRCAIVRFSRLSD 172 (331)
Q Consensus 113 ~vviide~d~l~~~~~~~Ll~~le~--------------~~~~~~~I~~~~~~------~~l~~~l~sr~~~i~~~~~~~ 172 (331)
-.||+||....+.+..++|.++++. |+++.++..+.|.+ .-+..+++.|+..++|.-.++
T Consensus 957 yWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE~hFddipe 1036 (4600)
T COG5271 957 YWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLEMHFDDIPE 1036 (4600)
T ss_pred cEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHhhhcccCcH
Confidence 6899999999999999999999983 44555554444543 246689999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHhc
Q 020071 173 EEILSRLMVVVQEEKVPYVPEGLEAIIFTA 202 (331)
Q Consensus 173 ~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~ 202 (331)
+|+..+|+.+| .+.+.-+..+++..
T Consensus 1037 dEle~ILh~rc-----~iapSyakKiVeVy 1061 (4600)
T COG5271 1037 DELEEILHGRC-----EIAPSYAKKIVEVY 1061 (4600)
T ss_pred HHHHHHHhccC-----ccCHHHHHHHHHHH
Confidence 99999998866 57777666666543
No 275
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.62 E-value=1.4e-07 Score=82.91 Aligned_cols=122 Identities=18% Similarity=0.201 Sum_probs=71.6
Q ss_pred hhcCCCCCCcccc----CHHHHHHHHHHHHcC----CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC
Q 020071 17 EKYRPTKVCDIVG----NLDAVARLGIIARDG----NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR 88 (331)
Q Consensus 17 ~~~~p~~~~~~ig----~~~~~~~l~~~l~~~----~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (331)
..+...+|+++.. +..+......++.+. ...+++|+||+|+|||+++.++++.+...+....++ ..++.
T Consensus 119 ~~~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~--~~~~l- 195 (306)
T PRK08939 119 KDLLQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLL--HFPEF- 195 (306)
T ss_pred HhHhcCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEE--EHHHH-
Confidence 3344567777653 333444445555532 234599999999999999999999986544333333 32211
Q ss_pred ChHhH---------HHHHHHHHhcccCCCCCCceEEEEeCCCCC--CHHHHHHHHH-HHHHh-cCCcEEEEeeCCC
Q 020071 89 GIDVV---------RNKIKMFAQKKVTLPPGKHKVVVLDEADSM--TAGAQQALRR-TMEIY-SNSTRFALACNVS 151 (331)
Q Consensus 89 ~~~~i---------~~~i~~~~~~~~~~~~~~~~vviide~d~l--~~~~~~~Ll~-~le~~-~~~~~~I~~~~~~ 151 (331)
...+ .+.++. .....++||||+..- +.-....++. +++.. ......|++||-.
T Consensus 196 -~~~lk~~~~~~~~~~~l~~---------l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 196 -IRELKNSISDGSVKEKIDA---------VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred -HHHHHHHHhcCcHHHHHHH---------hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 1111 111221 134679999998654 4444434544 55533 4667888888853
No 276
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.60 E-value=1.4e-06 Score=67.33 Aligned_cols=124 Identities=16% Similarity=0.336 Sum_probs=71.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCC-----------------CCceEEeecCCC-----------------CChHhHH
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNY-----------------REAVMELNASDD-----------------RGIDVVR 94 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~-----------------~~~~~~~~~~~~-----------------~~~~~i~ 94 (331)
++++|+||+||||++..++..+...++ ++.++.+..... -..+...
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~le 87 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEGLE 87 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHHHH
Confidence 899999999999999999998865432 122333331110 0123344
Q ss_pred HHHHHHHhcccCCCCCCceEEEEeCCCCCC---HHHHHHHHHHHHHhcCCcEEEEeeC--CCCCCChhhhcccceee-ec
Q 020071 95 NKIKMFAQKKVTLPPGKHKVVVLDEADSMT---AGAQQALRRTMEIYSNSTRFALACN--VSSKIIEPIQSRCAIVR-FS 168 (331)
Q Consensus 95 ~~i~~~~~~~~~~~~~~~~vviide~d~l~---~~~~~~Ll~~le~~~~~~~~I~~~~--~~~~l~~~l~sr~~~i~-~~ 168 (331)
+......+.++ ....++||||+..|- +.-..++-.+|+. ..++|++-. +.+.+...++++..++- +.
T Consensus 88 ~i~~~al~rA~----~~aDvIIIDEIGpMElks~~f~~~ve~vl~~---~kpliatlHrrsr~P~v~~ik~~~~v~v~lt 160 (179)
T COG1618 88 EIAIPALRRAL----EEADVIIIDEIGPMELKSKKFREAVEEVLKS---GKPLIATLHRRSRHPLVQRIKKLGGVYVFLT 160 (179)
T ss_pred HHhHHHHHHHh----hcCCEEEEecccchhhccHHHHHHHHHHhcC---CCcEEEEEecccCChHHHHhhhcCCEEEEEc
Confidence 33333333332 235799999998773 3334444445543 333555543 34567788888887776 44
Q ss_pred CCCHHHHHHHH
Q 020071 169 RLSDEEILSRL 179 (331)
Q Consensus 169 ~~~~~~~~~~l 179 (331)
|-+.+.+...+
T Consensus 161 ~~NR~~i~~~I 171 (179)
T COG1618 161 PENRNRILNEI 171 (179)
T ss_pred cchhhHHHHHH
Confidence 44444433333
No 277
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=98.59 E-value=1.1e-06 Score=68.66 Aligned_cols=102 Identities=15% Similarity=0.203 Sum_probs=86.3
Q ss_pred cchhhhhhhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc------c------------
Q 020071 223 VNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY------E------------ 284 (331)
Q Consensus 223 i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------~------------ 284 (331)
||.++|.++++....+.++++++++.++|..+++..++++...|.++..++..+..+.+.+ +
T Consensus 1 It~e~V~~~lG~v~~~~i~~l~~ai~~~d~~~~l~~~~~l~~~G~d~~~~l~~L~~~~R~ll~~k~~~~~~~~~~~~~~~ 80 (143)
T PF12169_consen 1 ITAEDVREILGLVDEEQIFELLDAILEGDAAEALELLNELLEQGKDPKQFLDDLIEYLRDLLLYKITGDKSNLLELSEEE 80 (143)
T ss_dssp B-HHHHHHHHTHTSTHHHHHHHHHHHTT-HHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHHTTSGGGS-SG--CTTT
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCchhhcccCCHHH
Confidence 6789999999999999999999999999999999999999999999999999988876652 0
Q ss_pred ----------cChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 020071 285 ----------MAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324 (331)
Q Consensus 285 ----------~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~ 324 (331)
++...+.++++.+.+++.+++...++++.+|..+++++..
T Consensus 81 ~~~~~~~a~~~~~~~l~~~~~~l~~~~~~lr~s~~pr~~lE~~llrl~~~ 130 (143)
T PF12169_consen 81 EEKLKELAKKFSPERLQRILQILLEAENELRYSSNPRILLEMALLRLCQL 130 (143)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Confidence 2222335888999999999999999999999999999974
No 278
>PHA00729 NTP-binding motif containing protein
Probab=98.56 E-value=4.5e-07 Score=75.21 Aligned_cols=128 Identities=16% Similarity=0.133 Sum_probs=71.9
Q ss_pred HHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCC--CceEEeecCC---CCChHhHHHHHHHHHhcccCCCCC
Q 020071 36 RLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYR--EAVMELNASD---DRGIDVVRNKIKMFAQKKVTLPPG 110 (331)
Q Consensus 36 ~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~--~~~~~~~~~~---~~~~~~i~~~i~~~~~~~~~~~~~ 110 (331)
...+.+..+...+++|+|+||+|||++|.++++.+...... .......... ....+.+.+.+....... .
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~-----~ 81 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDND-----Y 81 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcC-----C
Confidence 34445566666679999999999999999999987310000 0000000000 011223333333322211 1
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccceeeecCCCHHHHHHHHHHH
Q 020071 111 KHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVV 182 (331)
Q Consensus 111 ~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~ 182 (331)
+..++||||+.--... .. -..+ . ......+.+.++||+..+.|.+++++++...++.+
T Consensus 82 ~~dlLIIDd~G~~~~~---~~-wh~~----~------~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~R 139 (226)
T PHA00729 82 RIPLIIFDDAGIWLSK---YV-WYED----Y------MKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREK 139 (226)
T ss_pred CCCEEEEeCCchhhcc---cc-hhhh----c------cchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhC
Confidence 2358899986432110 00 0000 0 01234567889999999999999999999988774
No 279
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2.5e-06 Score=77.61 Aligned_cols=151 Identities=15% Similarity=0.267 Sum_probs=89.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC-CCh------HhHHHHHHHHHhcccCCCCCCceEEEEeCCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD-RGI------DVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD 121 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-~~~------~~i~~~i~~~~~~~~~~~~~~~~vviide~d 121 (331)
+||.||+|+|||++|-.++..- .++|+.+-.++. .|. ..+......+..++ -.+++||+++
T Consensus 541 vLl~Gp~~sGKTaLAA~iA~~S-----~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~-------lsiivvDdiE 608 (744)
T KOG0741|consen 541 VLLEGPPGSGKTALAAKIALSS-----DFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSP-------LSIIVVDDIE 608 (744)
T ss_pred EEEecCCCCChHHHHHHHHhhc-----CCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCc-------ceEEEEcchh
Confidence 7999999999999999999987 889988765432 222 23444445444444 4699999998
Q ss_pred CCC----------HHHHHHHHHHHHHhcCC--cEEEEeeCCCCCCChhh--hcc-cceeeecCCCH-HHHHHHHHHHHHh
Q 020071 122 SMT----------AGAQQALRRTMEIYSNS--TRFALACNVSSKIIEPI--QSR-CAIVRFSRLSD-EEILSRLMVVVQE 185 (331)
Q Consensus 122 ~l~----------~~~~~~Ll~~le~~~~~--~~~I~~~~~~~~l~~~l--~sr-~~~i~~~~~~~-~~~~~~l~~~~~~ 185 (331)
++- .-..++|+-++...|+. -.+|++|+....++... .+- ...++.+.++. +++.+.++..
T Consensus 609 rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~--- 685 (744)
T KOG0741|consen 609 RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEEL--- 685 (744)
T ss_pred hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHc---
Confidence 772 23455666666655543 44666665432222111 111 13467777776 6777776652
Q ss_pred cCCCCCHHHHHHHHHhcCC-----CHHHHHHHHHHH
Q 020071 186 EKVPYVPEGLEAIIFTADG-----DMRQALNNLQAT 216 (331)
Q Consensus 186 ~~~~i~~~~~~~l~~~~~g-----~~r~~~~~l~~~ 216 (331)
+ .++++..+.+++.-.+ -+.+++.+++.+
T Consensus 686 -n-~fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a 719 (744)
T KOG0741|consen 686 -N-IFSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMA 719 (744)
T ss_pred -c-CCCcchhHHHHHHHhccccchhHHHHHHHHHHH
Confidence 2 2444444444433222 255556665554
No 280
>PRK09183 transposase/IS protein; Provisional
Probab=98.50 E-value=3.1e-07 Score=79.01 Aligned_cols=96 Identities=21% Similarity=0.248 Sum_probs=57.5
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHH-----HHHHHhcccCCCCCCceEEEEeCCCC
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNK-----IKMFAQKKVTLPPGKHKVVVLDEADS 122 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~-----i~~~~~~~~~~~~~~~~vviide~d~ 122 (331)
+++|+||+|+|||+++.+++......+ ..+..++..+.. ..+... +....... .....++||||++.
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G--~~v~~~~~~~l~--~~l~~a~~~~~~~~~~~~~----~~~~dlLiiDdlg~ 175 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAG--IKVRFTTAADLL--LQLSTAQRQGRYKTTLQRG----VMAPRLLIIDEIGY 175 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEeHHHHH--HHHHHHHHCCcHHHHHHHH----hcCCCEEEEccccc
Confidence 589999999999999999988754332 233333322110 011000 11111111 12356999999987
Q ss_pred C--CHHHHHHHHHHHHHhcCCcEEEEeeCCC
Q 020071 123 M--TAGAQQALRRTMEIYSNSTRFALACNVS 151 (331)
Q Consensus 123 l--~~~~~~~Ll~~le~~~~~~~~I~~~~~~ 151 (331)
. +....+.|..+++....+..+|+++|..
T Consensus 176 ~~~~~~~~~~lf~li~~r~~~~s~iiTsn~~ 206 (259)
T PRK09183 176 LPFSQEEANLFFQVIAKRYEKGSMILTSNLP 206 (259)
T ss_pred CCCChHHHHHHHHHHHHHHhcCcEEEecCCC
Confidence 4 4566678888887644445678888764
No 281
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.50 E-value=1.7e-05 Score=70.99 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=51.3
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeeCCCCCCCh----------------hhhcc-cc-eeeecC
Q 020071 110 GKHKVVVLDEADSMTAGAQQALRRTMEIYS--NSTRFALACNVSSKIIE----------------PIQSR-CA-IVRFSR 169 (331)
Q Consensus 110 ~~~~vviide~d~l~~~~~~~Ll~~le~~~--~~~~~I~~~~~~~~l~~----------------~l~sr-~~-~i~~~~ 169 (331)
..+-||+|||.|+++++....+++.+...- +++.+|++.+.. .+.. ....+ ++ .+.+++
T Consensus 171 ~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~-~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP~ 249 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPE-ILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLPP 249 (325)
T ss_pred CceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHH-HHHHHHHhhcCcccccccHHHHHHhhcCeEEEeCC
Confidence 457899999999999987777777666322 578888887541 1111 11222 23 378899
Q ss_pred CCHHHHHHHHHHHHHh
Q 020071 170 LSDEEILSRLMVVVQE 185 (331)
Q Consensus 170 ~~~~~~~~~l~~~~~~ 185 (331)
++..++..++...+..
T Consensus 250 ~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 250 PSPSDLERYLNELLES 265 (325)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999888877543
No 282
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.48 E-value=5.6e-07 Score=77.05 Aligned_cols=102 Identities=24% Similarity=0.335 Sum_probs=60.2
Q ss_pred CCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHH-HHhcccCCCCCCceEEEEeCCCCC-
Q 020071 46 MPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKM-FAQKKVTLPPGKHKVVVLDEADSM- 123 (331)
Q Consensus 46 ~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~-~~~~~~~~~~~~~~vviide~d~l- 123 (331)
..+++|+||+|+|||++|.++++.+... +..+..++.++. ...+...... .....+........++||||+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~--g~sv~f~~~~el--~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~ 180 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKA--GISVLFITAPDL--LSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEP 180 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEEHHHH--HHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCcc
Confidence 3359999999999999999999998733 334444443321 1122221111 000000000234679999998775
Q ss_pred -CHHHHHHHHHHHHHhcCCcEEEEeeCCC
Q 020071 124 -TAGAQQALRRTMEIYSNSTRFALACNVS 151 (331)
Q Consensus 124 -~~~~~~~Ll~~le~~~~~~~~I~~~~~~ 151 (331)
+....+.+..++...-..-..++++|.+
T Consensus 181 ~~~~~~~~~~q~I~~r~~~~~~~~tsN~~ 209 (254)
T COG1484 181 FSQEEADLLFQLISRRYESRSLIITSNLS 209 (254)
T ss_pred CCHHHHHHHHHHHHHHHhhccceeecCCC
Confidence 4555677777776544444448888764
No 283
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.47 E-value=7.2e-06 Score=78.85 Aligned_cols=177 Identities=18% Similarity=0.221 Sum_probs=110.3
Q ss_pred CCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHH-----
Q 020071 20 RPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVR----- 94 (331)
Q Consensus 20 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~----- 94 (331)
+|......+-+++....|.... ...-++|+.|.|+||||++-.++. ...++.....+.++.++.....-..
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~~~---~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~dndp~rF~~yLi~a 89 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRRAN---DYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDESDNDPARFLSYLIAA 89 (894)
T ss_pred CCCCcccccccHHHHHHHhcCC---CceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCccCCHHHHHHHHHHH
Confidence 4556666777777666655442 222379999999999999999987 3333333333333333321110011
Q ss_pred -------------------------HHHHHHHhcccCCCCCCceEEEEeCCCCCCHHH-HHHHHHHHHHhcCCcEEEEee
Q 020071 95 -------------------------NKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGA-QQALRRTMEIYSNSTRFALAC 148 (331)
Q Consensus 95 -------------------------~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~-~~~Ll~~le~~~~~~~~I~~~ 148 (331)
..+....... ....++-.+||||.|..+... ...|..+++..|++..+|++|
T Consensus 90 l~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~El--a~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~S 167 (894)
T COG2909 90 LQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNEL--ASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTS 167 (894)
T ss_pred HHHhCccccHHHHHHHHhcccccHHHHHHHHHHHH--HhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEe
Confidence 1111111100 002345799999999997655 556777788889999999998
Q ss_pred CCCCCC-Chhhhcccceee----ecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCC
Q 020071 149 NVSSKI-IEPIQSRCAIVR----FSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGD 205 (331)
Q Consensus 149 ~~~~~l-~~~l~sr~~~i~----~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~ 205 (331)
.....+ +..++=|-..++ --.++.+|..+++... .+..++...++.|...++|=
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~---~~l~Ld~~~~~~L~~~teGW 226 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDR---GSLPLDAADLKALYDRTEGW 226 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHc---CCCCCChHHHHHHHhhcccH
Confidence 765433 344444433332 2256788999998773 35789999999999999873
No 284
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.44 E-value=2.8e-05 Score=66.04 Aligned_cols=183 Identities=17% Similarity=0.170 Sum_probs=104.8
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcC-CCCCCceEEeecCCCCChHhHHHHHHHH---Hhccc-----CCCCCCceEEEEe
Q 020071 48 NLILAGPPGTGKTTSILALAHELLG-PNYREAVMELNASDDRGIDVVRNKIKMF---AQKKV-----TLPPGKHKVVVLD 118 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~i~~~i~~~---~~~~~-----~~~~~~~~vviid 118 (331)
.+|+.||.|.||+.+|+.+...-.. ......|+++||....+........... .+... -+...++.++++|
T Consensus 210 p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfld 289 (531)
T COG4650 210 PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFLD 289 (531)
T ss_pred CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEehH
Confidence 3999999999999999988654221 2235689999998876644333332111 11000 0124578899999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc-----------CCcEEEEeeCC-------CCCCChhhhcccceeeecCCCHH----H--
Q 020071 119 EADSMTAGAQQALRRTMEIYS-----------NSTRFALACNV-------SSKIIEPIQSRCAIVRFSRLSDE----E-- 174 (331)
Q Consensus 119 e~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~~~-------~~~l~~~l~sr~~~i~~~~~~~~----~-- 174 (331)
|+..+..+.|..|++.+|+.. .+..+|.-+.. ....-..+-.|...+.|.-|.-. +
T Consensus 290 eigelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~arinlwtf~lpgl~qr~edie 369 (531)
T COG4650 290 EIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIE 369 (531)
T ss_pred hhhhcCccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhhheeeeeccccccCccccC
Confidence 999999999999999999632 12222222211 11222334444444544433321 1
Q ss_pred --HHHHHHHHHHhc--CCCCCHHHHHHHHHhc-------CCCHHHHHHHHHHHh--hCCCccchhhhhh
Q 020071 175 --ILSRLMVVVQEE--KVPYVPEGLEAIIFTA-------DGDMRQALNNLQATY--SGFRFVNQENVFK 230 (331)
Q Consensus 175 --~~~~l~~~~~~~--~~~i~~~~~~~l~~~~-------~g~~r~~~~~l~~~~--~~~~~i~~~~v~~ 230 (331)
+..-+.+.+... .+.+..++-..-.... .||.|.+-.-+-.++ ..++.||.+.|.+
T Consensus 370 pnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatlad~grit~~~ve~ 438 (531)
T COG4650 370 PNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATLADSGRITLDVVED 438 (531)
T ss_pred CCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHHhcCCceeHHHHHH
Confidence 111233333333 3445555544333222 488988777665543 4566788877764
No 285
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.43 E-value=3.2e-07 Score=74.89 Aligned_cols=48 Identities=33% Similarity=0.517 Sum_probs=33.2
Q ss_pred ccccCHHHHHHHHHHHH---cCCCCeEEEeCCCCccHHHHHHHHHHHhcCC
Q 020071 26 DIVGNLDAVARLGIIAR---DGNMPNLILAGPPGTGKTTSILALAHELLGP 73 (331)
Q Consensus 26 ~~ig~~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~ 73 (331)
.++|++..++.+...+. .+..+.++++|++|+|||++++.+...+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 37899999999999983 2333448999999999999999998887543
No 286
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.36 E-value=2.9e-06 Score=62.70 Aligned_cols=72 Identities=28% Similarity=0.397 Sum_probs=45.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCC---CCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPN---YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~ 125 (331)
++||||+|+|||++++.+++.+.... ....++..+..+. -+ .. -.+..++++||+.....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~----~w----~g---------Y~~q~vvi~DD~~~~~~ 63 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDK----FW----DG---------YQGQPVVIIDDFGQDND 63 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccc----hh----hc---------cCCCcEEEEeecCcccc
Confidence 57999999999999999999885321 1122322222211 11 10 23568999999988764
Q ss_pred H----HHHHHHHHHHH
Q 020071 126 G----AQQALRRTMEI 137 (331)
Q Consensus 126 ~----~~~~Ll~~le~ 137 (331)
. ....+++++..
T Consensus 64 ~~~~~~~~~l~~l~s~ 79 (107)
T PF00910_consen 64 GYNYSDESELIRLISS 79 (107)
T ss_pred ccchHHHHHHHHHHhc
Confidence 3 45667777664
No 287
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.34 E-value=3.3e-06 Score=76.53 Aligned_cols=133 Identities=23% Similarity=0.329 Sum_probs=81.4
Q ss_pred ccccCHHHHHHHHHHHHcCC---CC---------eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChH--
Q 020071 26 DIVGNLDAVARLGIIARDGN---MP---------NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGID-- 91 (331)
Q Consensus 26 ~~ig~~~~~~~l~~~l~~~~---~~---------~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~-- 91 (331)
.+.|++++++.+.=++-+|. +| +||+.|.||+.|+.+.+.+-+-. ++..+...+..+..
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs-------PIaVYTSGKGSSAAGL 404 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS-------PIAVYTSGKGSSAAGL 404 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC-------ceEEEecCCCcccccc
Confidence 46689998888776665432 11 48999999999999999877643 22222222111100
Q ss_pred ---hHHHHH-HHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh-------------cCCcEEEEeeCCCC--
Q 020071 92 ---VVRNKI-KMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY-------------SNSTRFALACNVSS-- 152 (331)
Q Consensus 92 ---~i~~~i-~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~-------------~~~~~~I~~~~~~~-- 152 (331)
.+++.. .++.-....+--++++||.|||+|+|.++..-++.+.||.. ...|.++.++|...
T Consensus 405 TASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGR 484 (729)
T KOG0481|consen 405 TASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGR 484 (729)
T ss_pred eeeEEecCCcceEEEecceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCcccc
Confidence 011100 00000000111356889999999999999999999999853 23455666666531
Q ss_pred -----------CCChhhhccccee
Q 020071 153 -----------KIIEPIQSRCAIV 165 (331)
Q Consensus 153 -----------~l~~~l~sr~~~i 165 (331)
.+.+++.||+..+
T Consensus 485 yDd~Kt~~dNIDf~~TILSRFDmI 508 (729)
T KOG0481|consen 485 YDDTKTGEDNIDFMPTILSRFDMI 508 (729)
T ss_pred ccccCCcccccchhhhHhhhccEE
Confidence 3458999998654
No 288
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.33 E-value=1e-05 Score=70.97 Aligned_cols=183 Identities=18% Similarity=0.197 Sum_probs=106.9
Q ss_pred ccccCHHHHHHHHHHHHcC--CCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCC----------------
Q 020071 26 DIVGNLDAVARLGIIARDG--NMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASD---------------- 86 (331)
Q Consensus 26 ~~ig~~~~~~~l~~~l~~~--~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~---------------- 86 (331)
.+.+++..+..|...+... ..|. +++||.+|+|||.+.+.+.+..+ .+.+.+++-+
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHHHHHhc
Confidence 5678899999999998664 3566 69999999999999999999883 3333333211
Q ss_pred ---CCC------hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHH---HHHHHHHHHHhc-CCcEEEEeeCCCCC
Q 020071 87 ---DRG------IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGA---QQALRRTMEIYS-NSTRFALACNVSSK 153 (331)
Q Consensus 87 ---~~~------~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~---~~~Ll~~le~~~-~~~~~I~~~~~~~~ 153 (331)
..+ .+.+.+.+..+.+.+.....+..-.+|+|++|.+..-. .+.|.+.-+-.+ +.++++++.....+
T Consensus 82 ~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 82 LADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred cCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHH
Confidence 111 12333444444443322223456789999999886433 334444433222 35666666554333
Q ss_pred CCh--hhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHH----HHH----HHHHhcCCCHHHHHHHHHHHh
Q 020071 154 IIE--PIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPE----GLE----AIIFTADGDMRQALNNLQATY 217 (331)
Q Consensus 154 l~~--~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~----~~~----~l~~~~~g~~r~~~~~l~~~~ 217 (331)
... +=..-..++.|+.++.+++..++.+-- .| ....+ -++ -+...++ |+..+...+....
T Consensus 162 ~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~--p~-~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~~w 231 (438)
T KOG2543|consen 162 QYLINTGTLEIVVLHFPQYSVEETQVILSRDN--PG-KRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISLAW 231 (438)
T ss_pred HhhcccCCCCceEEecCCCCHHHHHHHHhcCC--cc-ccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHH
Confidence 221 111123567999999999999886521 11 11211 111 2223344 8888777776553
No 289
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.32 E-value=1e-07 Score=84.97 Aligned_cols=151 Identities=21% Similarity=0.268 Sum_probs=77.4
Q ss_pred hhhhcCCCCCCccccCHHHHHHHHHHHHcCC------------CCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEe
Q 020071 15 WVEKYRPTKVCDIVGNLDAVARLGIIARDGN------------MPNLILAGPPGTGKTTSILALAHELLGPNYREAVMEL 82 (331)
Q Consensus 15 ~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~------------~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 82 (331)
+.....| .+.|++.++..+.=.+-+|. .-|+||.|.||+|||.+.+.+.+... ..+..
T Consensus 18 l~~s~aP----~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~p------r~v~~ 87 (331)
T PF00493_consen 18 LANSIAP----SIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAP------RSVYT 87 (331)
T ss_dssp CHHHCSS----TTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-S------SEEEE
T ss_pred HHHHhCC----cCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCC------ceEEE
Confidence 4445555 56688887775433332221 12699999999999999987655432 12222
Q ss_pred ecCCC--CCh--HhHHH-HHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHH-------------hcCCcEE
Q 020071 83 NASDD--RGI--DVVRN-KIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEI-------------YSNSTRF 144 (331)
Q Consensus 83 ~~~~~--~~~--~~i~~-~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~-------------~~~~~~~ 144 (331)
++... .+. ...++ .-..+.-.+..+..+.++|++|||+|++..+....|++.||. .+.++.+
T Consensus 88 ~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~sv 167 (331)
T PF00493_consen 88 SGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSV 167 (331)
T ss_dssp ECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EE
T ss_pred CCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhh
Confidence 21110 000 00000 000011000001135689999999999999999999999994 2456778
Q ss_pred EEeeCCCC-------------CCChhhhccccee--eecCCCHHHH
Q 020071 145 ALACNVSS-------------KIIEPIQSRCAIV--RFSRLSDEEI 175 (331)
Q Consensus 145 I~~~~~~~-------------~l~~~l~sr~~~i--~~~~~~~~~~ 175 (331)
+.++|... .+.+++.|||..+ -..+++.+.-
T Consensus 168 laa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D 213 (331)
T PF00493_consen 168 LAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEED 213 (331)
T ss_dssp EEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHH
T ss_pred HHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccc
Confidence 88887643 4678999998765 2456654433
No 290
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.31 E-value=5.6e-05 Score=68.12 Aligned_cols=106 Identities=13% Similarity=0.129 Sum_probs=67.7
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHh------cCCcEEEEeeCCCC---CCChhhhcc-cceeeecCCCHHHHHHHHH
Q 020071 111 KHKVVVLDEADSMTAGAQQALRRTMEIY------SNSTRFALACNVSS---KIIEPIQSR-CAIVRFSRLSDEEILSRLM 180 (331)
Q Consensus 111 ~~~vviide~d~l~~~~~~~Ll~~le~~------~~~~~~I~~~~~~~---~l~~~l~sr-~~~i~~~~~~~~~~~~~l~ 180 (331)
.+.|||||++..-... .+.+.+.+-+- ..-..+||.|++.. .|.+++-+| +..+.+.-.+++....++.
T Consensus 148 ~~PVVVIdnF~~k~~~-~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEE-NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred cCCEEEEcchhccCcc-cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 3789999998765443 33333333221 12345777777653 344555555 6778999999999999999
Q ss_pred HHHHhcC-C-------------------CCCHHHHHHHHHhcCCCHHHHHHHHHHHh
Q 020071 181 VVVQEEK-V-------------------PYVPEGLEAIIFTADGDMRQALNNLQATY 217 (331)
Q Consensus 181 ~~~~~~~-~-------------------~i~~~~~~~l~~~~~g~~r~~~~~l~~~~ 217 (331)
..+.... . ..+...++..+..-||-+..+-.+++..-
T Consensus 227 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRik 283 (431)
T PF10443_consen 227 SQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIK 283 (431)
T ss_pred HHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 8876531 0 12445566777777887777666666553
No 291
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.29 E-value=6.8e-07 Score=71.51 Aligned_cols=126 Identities=19% Similarity=0.360 Sum_probs=64.2
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCCC-----------------CCceEEeecC--------C-C--CChHhHHHHHHH
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPNY-----------------REAVMELNAS--------D-D--RGIDVVRNKIKM 99 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~~-----------------~~~~~~~~~~--------~-~--~~~~~i~~~i~~ 99 (331)
|++|+|++|+||||+++.+.+.+...+. ++.++.+... . . .......-..+.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~e~ 80 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDLES 80 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-HHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcHHH
Confidence 5899999999999999999998832210 1122222110 0 0 000000001122
Q ss_pred HHhcccCCCC---CCceEEEEeCCCCC---CHHHHHHHHHHHHHhcCCcEEEEeeCC--CCCCChhhhcc--cceeeecC
Q 020071 100 FAQKKVTLPP---GKHKVVVLDEADSM---TAGAQQALRRTMEIYSNSTRFALACNV--SSKIIEPIQSR--CAIVRFSR 169 (331)
Q Consensus 100 ~~~~~~~~~~---~~~~vviide~d~l---~~~~~~~Ll~~le~~~~~~~~I~~~~~--~~~l~~~l~sr--~~~i~~~~ 169 (331)
+......... ....+++|||+..| ++.-.+++.++|+ .+..+|.+-.. ...+.+.+++| +.++.+.+
T Consensus 81 fe~~~~~~L~~~~~~~~liviDEIG~mEl~~~~F~~~v~~~l~---s~~~vi~vv~~~~~~~~l~~i~~~~~~~i~~vt~ 157 (168)
T PF03266_consen 81 FEEIGLPALRNALSSSDLIVIDEIGKMELKSPGFREAVEKLLD---SNKPVIGVVHKRSDNPFLEEIKRRPDVKIFEVTE 157 (168)
T ss_dssp HHCCCCCCCHHHHHCCHEEEE---STTCCC-CHHHHHHHHHHC---TTSEEEEE--SS--SCCHHHHHTTTTSEEEE--T
T ss_pred HHHHHHHHHHhhcCCCCEEEEeccchhhhcCHHHHHHHHHHHc---CCCcEEEEEecCCCcHHHHHHHhCCCcEEEEeCh
Confidence 2221111001 24679999999877 4556788888888 23445554333 35688999998 67777776
Q ss_pred CCHHHHH
Q 020071 170 LSDEEIL 176 (331)
Q Consensus 170 ~~~~~~~ 176 (331)
-+.+.+.
T Consensus 158 ~NRd~l~ 164 (168)
T PF03266_consen 158 ENRDALP 164 (168)
T ss_dssp TTCCCHH
T ss_pred hHHhhHh
Confidence 6655443
No 292
>PHA02774 E1; Provisional
Probab=98.26 E-value=1e-05 Score=75.59 Aligned_cols=138 Identities=20% Similarity=0.268 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCC
Q 020071 32 DAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG 110 (331)
Q Consensus 32 ~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~ 110 (331)
.....|+.++++..-.+ ++||||||+|||+++..+++.+.+ ..+..+|.... +.-.+ ..
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G----~vi~fvN~~s~------------FwLqp----l~ 478 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKG----KVISFVNSKSH------------FWLQP----LA 478 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC----CEEEEEECccc------------cccch----hc
Confidence 34556677775432223 899999999999999999999832 12222443211 11111 34
Q ss_pred CceEEEEeCCCCC-CHHHHHHHHHHHHHhc-------------CCcEEEEeeCCC---CCCChhhhcccceeeec-----
Q 020071 111 KHKVVVLDEADSM-TAGAQQALRRTMEIYS-------------NSTRFALACNVS---SKIIEPIQSRCAIVRFS----- 168 (331)
Q Consensus 111 ~~~vviide~d~l-~~~~~~~Ll~~le~~~-------------~~~~~I~~~~~~---~~l~~~l~sr~~~i~~~----- 168 (331)
+.+++++||+-.- ..-....|..+|+..+ ...++|+++|-. ..-.+.|.||...+.|+
T Consensus 479 d~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi~~f~F~n~~P~ 558 (613)
T PHA02774 479 DAKIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRITVFEFPNPFPL 558 (613)
T ss_pred cCCEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhEEEEECCCCCCc
Confidence 5789999999222 1223445677776432 124588888753 23457888998887665
Q ss_pred --------CCCHHHHHHHHHHHHHhcCCC
Q 020071 169 --------RLSDEEILSRLMVVVQEEKVP 189 (331)
Q Consensus 169 --------~~~~~~~~~~l~~~~~~~~~~ 189 (331)
.+++...+.++++...+.++.
T Consensus 559 d~~G~P~f~ltd~~WKsFF~rlw~~LdL~ 587 (613)
T PHA02774 559 DENGNPVFELTDANWKSFFERLWSQLDLS 587 (613)
T ss_pred CCCCCEeeeeCchhHHHHHHHHHHHcCCC
Confidence 234466777787777665544
No 293
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.21 E-value=8.1e-06 Score=60.97 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=42.9
Q ss_pred ccccCHHHHHHHHHHHHc----C--CCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEe
Q 020071 26 DIVGNLDAVARLGIIARD----G--NMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMEL 82 (331)
Q Consensus 26 ~~ig~~~~~~~l~~~l~~----~--~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 82 (331)
.+.||.-+.+.+.++++. . +-|- +-|+|++|+|||.+++.+|+.+...+...+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~ 89 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQ 89 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceee
Confidence 588999888776666653 2 2232 4799999999999999999998877666655543
No 294
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.18 E-value=0.00046 Score=63.23 Aligned_cols=132 Identities=21% Similarity=0.213 Sum_probs=83.2
Q ss_pred HHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCCh-HhHHHHHHHHHhcccCCCCCC
Q 020071 33 AVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGI-DVVRNKIKMFAQKKVTLPPGK 111 (331)
Q Consensus 33 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~i~~~i~~~~~~~~~~~~~~ 111 (331)
....+.+.+..... .++++||.++|||++++.+.+.+.. ..+.++..+.... ....+....+..... .+
T Consensus 25 ~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~-----~~iy~~~~d~~~~~~~l~d~~~~~~~~~~----~~ 94 (398)
T COG1373 25 LLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLE-----EIIYINFDDLRLDRIELLDLLRAYIELKE----RE 94 (398)
T ss_pred hhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCc-----ceEEEEecchhcchhhHHHHHHHHHHhhc----cC
Confidence 33444444444332 4799999999999999888887742 2566665554222 233444444444332 15
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC----CCCChhhhcccceeeecCCCHHHHHH
Q 020071 112 HKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVS----SKIIEPIQSRCAIVRFSRLSDEEILS 177 (331)
Q Consensus 112 ~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~----~~l~~~l~sr~~~i~~~~~~~~~~~~ 177 (331)
...+++||++.... -...+..+.+..+. .+++++.+. .+..+.+.-|...+.+.|++-.|...
T Consensus 95 ~~yifLDEIq~v~~-W~~~lk~l~d~~~~--~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 95 KSYIFLDEIQNVPD-WERALKYLYDRGNL--DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred CceEEEecccCchh-HHHHHHHHHccccc--eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 67999999999854 34444445554333 455554443 35567777888999999999888865
No 295
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.17 E-value=1e-05 Score=66.73 Aligned_cols=113 Identities=25% Similarity=0.332 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHH-------HHHHhcc
Q 020071 32 DAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKI-------KMFAQKK 104 (331)
Q Consensus 32 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i-------~~~~~~~ 104 (331)
.....+...+.++. ...++.|++|+|||+++..+.+.+... +..++-+.+... ....+.+.. ..+....
T Consensus 5 ~Q~~a~~~~l~~~~-~~~~l~G~aGtGKT~~l~~~~~~~~~~--g~~v~~~apT~~-Aa~~L~~~~~~~a~Ti~~~l~~~ 80 (196)
T PF13604_consen 5 EQREAVRAILTSGD-RVSVLQGPAGTGKTTLLKALAEALEAA--GKRVIGLAPTNK-AAKELREKTGIEAQTIHSFLYRI 80 (196)
T ss_dssp HHHHHHHHHHHCTC-SEEEEEESTTSTHHHHHHHHHHHHHHT--T--EEEEESSHH-HHHHHHHHHTS-EEEHHHHTTEE
T ss_pred HHHHHHHHHHhcCC-eEEEEEECCCCCHHHHHHHHHHHHHhC--CCeEEEECCcHH-HHHHHHHhhCcchhhHHHHHhcC
Confidence 44555666666654 236899999999999999998887554 234444433321 112222221 1111111
Q ss_pred cCC------CCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 105 VTL------PPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 105 ~~~------~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
... ......++||||+..++......|++.... .++++|++.+.
T Consensus 81 ~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 81 PNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp CCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred CcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 100 023457999999999998887888877765 46788888754
No 296
>PRK04296 thymidine kinase; Provisional
Probab=98.16 E-value=2.2e-05 Score=64.41 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=55.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecC-C-C---------CC-------hHhHHHHHHHHHhcccCCCCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNAS-D-D---------RG-------IDVVRNKIKMFAQKKVTLPPG 110 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~-~-~---------~~-------~~~i~~~i~~~~~~~~~~~~~ 110 (331)
.+++||+|+|||+++..++..+...+ ..++.+.+. + . .+ .....+.+..+.. . .+
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g--~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~----~~ 77 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERG--MKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-E----GE 77 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcC--CeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-h----CC
Confidence 59999999999999999988875432 222222221 0 0 01 1112223222222 1 34
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 111 KHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 111 ~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
+..+|+|||++.++.+....|.+.+.. .++.+|++...
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~~--~g~~vi~tgl~ 115 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLDD--LGIPVICYGLD 115 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHHH--cCCeEEEEecC
Confidence 578999999999987756666666653 44566666543
No 297
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.11 E-value=0.00021 Score=64.63 Aligned_cols=97 Identities=24% Similarity=0.259 Sum_probs=57.4
Q ss_pred HHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEe
Q 020071 39 IIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLD 118 (331)
Q Consensus 39 ~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviid 118 (331)
.+++.+. |+++.||+|||||+++.++.....|... .... ..+++......... .-+...+|+||
T Consensus 204 ~fve~~~--Nli~lGp~GTGKThla~~l~~~~a~~sG----------~f~T---~a~Lf~~L~~~~lg-~v~~~DlLI~D 267 (449)
T TIGR02688 204 PLVEPNY--NLIELGPKGTGKSYIYNNLSPYVILISG----------GTIT---VAKLFYNISTRQIG-LVGRWDVVAFD 267 (449)
T ss_pred HHHhcCC--cEEEECCCCCCHHHHHHHHhHHHHHHcC----------CcCc---HHHHHHHHHHHHHh-hhccCCEEEEE
Confidence 4455543 6999999999999999998877322111 1111 11222222211110 03567899999
Q ss_pred CCCCCCH----HHHHHHHHHHHHh---------cCCcEEEEeeCCC
Q 020071 119 EADSMTA----GAQQALRRTMEIY---------SNSTRFALACNVS 151 (331)
Q Consensus 119 e~d~l~~----~~~~~Ll~~le~~---------~~~~~~I~~~~~~ 151 (331)
|+..++- +..+.|..+|+.. ..++.++|..|-.
T Consensus 268 Evgylp~~~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~ 313 (449)
T TIGR02688 268 EVATLKFAKPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVP 313 (449)
T ss_pred cCCCCcCCchHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccC
Confidence 9998643 3456777778742 2455677776643
No 298
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.11 E-value=0.00025 Score=61.15 Aligned_cols=151 Identities=16% Similarity=0.201 Sum_probs=92.9
Q ss_pred ccccCHHHHHH---HHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHh
Q 020071 26 DIVGNLDAVAR---LGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQ 102 (331)
Q Consensus 26 ~~ig~~~~~~~---l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 102 (331)
+++-.+++++. +.+.+...+ .|+++.|..|+||+++++..+--. +..++++......+..++++.++.+..
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~~-Gh~LLvG~~GsGr~sl~rLaa~i~-----~~~~~~i~~~~~y~~~~f~~dLk~~~~ 82 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQPR-GHALLVGVGGSGRQSLARLAAFIC-----GYEVFQIEITKGYSIKDFKEDLKKALQ 82 (268)
T ss_dssp -----HHHHHHHHHHHHHHCSTT-EEEEEECTTTSCHHHHHHHHHHHT-----TEEEE-TTTSTTTHHHHHHHHHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHcCCC-CCeEEecCCCccHHHHHHHHHHHh-----ccceEEEEeeCCcCHHHHHHHHHHHHH
Confidence 34445556654 444454433 579999999999999999666654 667777777666677888888877665
Q ss_pred cccCCCCCCceEEEEeCCCCCCHH---H------------------HHHHH---------------------HHHHHhcC
Q 020071 103 KKVTLPPGKHKVVVLDEADSMTAG---A------------------QQALR---------------------RTMEIYSN 140 (331)
Q Consensus 103 ~~~~~~~~~~~vviide~d~l~~~---~------------------~~~Ll---------------------~~le~~~~ 140 (331)
.... .++..+++++|.+-..+. . .+.+. -+++....
T Consensus 83 ~ag~--~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~rvr~ 160 (268)
T PF12780_consen 83 KAGI--KGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIERVRK 160 (268)
T ss_dssp HHHC--S-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHHHHCC
T ss_pred HHhc--cCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHHHHHh
Confidence 4321 456778888887654321 1 11111 12223346
Q ss_pred CcEEEEeeCCCCC-------CChhhhcccceeeecCCCHHHHHHHHHHHHH
Q 020071 141 STRFALACNVSSK-------IIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ 184 (331)
Q Consensus 141 ~~~~I~~~~~~~~-------l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~ 184 (331)
+..+|++.++... -.|++.++|.+.-|.+.+.+.+..+-....+
T Consensus 161 nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~ 211 (268)
T PF12780_consen 161 NLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLS 211 (268)
T ss_dssp CEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCC
T ss_pred heeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHH
Confidence 6778887665432 2378888899999999999888887666543
No 299
>PRK10536 hypothetical protein; Provisional
Probab=98.10 E-value=2.9e-05 Score=65.63 Aligned_cols=121 Identities=19% Similarity=0.163 Sum_probs=69.3
Q ss_pred CCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhc-CCCCCCceEEeecCCC-----C----C---
Q 020071 23 KVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL-GPNYREAVMELNASDD-----R----G--- 89 (331)
Q Consensus 23 ~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~-----~----~--- 89 (331)
.+..+.+.......+..++.+.. .+++.||+|||||+++.+++.... ... ...+.+..+.. . |
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~~--lV~i~G~aGTGKT~La~a~a~~~l~~~~--~~kIiI~RP~v~~ge~LGfLPG~~~ 128 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESKQ--LIFATGEAGCGKTWISAAKAAEALIHKD--VDRIIVTRPVLQADEDLGFLPGDIA 128 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcCC--eEEEECCCCCCHHHHHHHHHHHHHhcCC--eeEEEEeCCCCCchhhhCcCCCCHH
Confidence 34456666666677777776643 589999999999999999998532 322 22222221110 0 0
Q ss_pred --h----HhHHHHHHHH---------H---h-----cccCCCCC---CceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcE
Q 020071 90 --I----DVVRNKIKMF---------A---Q-----KKVTLPPG---KHKVVVLDEADSMTAGAQQALRRTMEIYSNSTR 143 (331)
Q Consensus 90 --~----~~i~~~i~~~---------~---~-----~~~~~~~~---~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~ 143 (331)
. ..+.+.+... . . .++....+ ...+|||||++.++......++ ...+.++.
T Consensus 129 eK~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~l---tR~g~~sk 205 (262)
T PRK10536 129 EKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFL---TRLGENVT 205 (262)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHH---hhcCCCCE
Confidence 0 1111111111 0 0 01111111 3579999999999986555555 45567888
Q ss_pred EEEeeCC
Q 020071 144 FALACNV 150 (331)
Q Consensus 144 ~I~~~~~ 150 (331)
+|++.+.
T Consensus 206 ~v~~GD~ 212 (262)
T PRK10536 206 VIVNGDI 212 (262)
T ss_pred EEEeCCh
Confidence 8888653
No 300
>PTZ00202 tuzin; Provisional
Probab=98.06 E-value=0.00028 Score=63.98 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=43.2
Q ss_pred CCCCCCccccCHHHHHHHHHHHHcCCC--Ce-EEEeCCCCccHHHHHHHHHHHh
Q 020071 20 RPTKVCDIVGNLDAVARLGIIARDGNM--PN-LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 20 ~p~~~~~~ig~~~~~~~l~~~l~~~~~--~~-~ll~G~~G~GKt~la~~l~~~l 70 (331)
-|....+++|++.....|...+..... |. +.|.|++|+|||++++.+...+
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l 310 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE 310 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence 466678999999999999999976433 33 5999999999999999999876
No 301
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.05 E-value=0.0017 Score=65.21 Aligned_cols=107 Identities=16% Similarity=0.129 Sum_probs=75.0
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHhc--C--CcEEEEeeCCCCCCChhhhcc--cceeeecCCCHHHHHHHHHHHH
Q 020071 110 GKHKVVVLDEADSMTAGAQQALRRTMEIYS--N--STRFALACNVSSKIIEPIQSR--CAIVRFSRLSDEEILSRLMVVV 183 (331)
Q Consensus 110 ~~~~vviide~d~l~~~~~~~Ll~~le~~~--~--~~~~I~~~~~~~~l~~~l~sr--~~~i~~~~~~~~~~~~~l~~~~ 183 (331)
.++-|+|+||.|.....+.+-|..+|...+ . ...+..+.+....+....++. ...+.+.|++..+....+...+
T Consensus 153 ~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l 232 (849)
T COG3899 153 EHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATL 232 (849)
T ss_pred cCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHh
Confidence 347899999999999988888888887654 1 011111111122233333333 4678999999999999999987
Q ss_pred HhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh
Q 020071 184 QEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY 217 (331)
Q Consensus 184 ~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~ 217 (331)
... .....+..+.+.+.+.|||--+-+.++.+.
T Consensus 233 ~~~-~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~ 265 (849)
T COG3899 233 GCT-KLLPAPLLELIFEKTKGNPFFIEEFLKALY 265 (849)
T ss_pred CCc-ccccchHHHHHHHHhcCCCccHHHHHHHHH
Confidence 653 345677889999999999988888777654
No 302
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.05 E-value=5.5e-05 Score=77.46 Aligned_cols=150 Identities=19% Similarity=0.229 Sum_probs=98.0
Q ss_pred HHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHH-----------HHHhcc
Q 020071 36 RLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIK-----------MFAQKK 104 (331)
Q Consensus 36 ~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~-----------~~~~~~ 104 (331)
++.+++.-++ .+++.|.||+|||+++.++|+.. +..++.+|.++.. .+.+++. .+...|
T Consensus 1535 rVlRAmqv~k--pilLEGsPGVGKTSlItaLAr~t-----G~kliRINLSeQT---dL~DLfGsd~Pve~~Gef~w~dap 1604 (4600)
T COG5271 1535 RVLRAMQVGK--PILLEGSPGVGKTSLITALARKT-----GKKLIRINLSEQT---DLCDLFGSDLPVEEGGEFRWMDAP 1604 (4600)
T ss_pred HHHHHHhcCC--ceeecCCCCccHHHHHHHHHHHh-----cCceEEeeccccc---hHHHHhCCCCCcccCceeEecccH
Confidence 4444444444 48999999999999999999998 6677777765431 1111110 011111
Q ss_pred cCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHH--------------hcCCcEEEEeeCC------CCCCChhhhcccce
Q 020071 105 VTLPPGKHKVVVLDEADSMTAGAQQALRRTMEI--------------YSNSTRFALACNV------SSKIIEPIQSRCAI 164 (331)
Q Consensus 105 ~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~--------------~~~~~~~I~~~~~------~~~l~~~l~sr~~~ 164 (331)
+--...++..|++||+...+....+.|...++. .++++++..+-|+ ...+++.+..|+.+
T Consensus 1605 fL~amr~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsv 1684 (4600)
T COG5271 1605 FLHAMRDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSV 1684 (4600)
T ss_pred HHHHhhcCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhhe
Confidence 111134577999999999888887777777763 2345554444333 24689999999999
Q ss_pred eeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 020071 165 VRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAII 199 (331)
Q Consensus 165 i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~ 199 (331)
+.+..++.+++..+.... -..+.++-.-.++
T Consensus 1685 V~~d~lt~dDi~~Ia~~~----yp~v~~d~~~kii 1715 (4600)
T COG5271 1685 VKMDGLTTDDITHIANKM----YPQVNEDWRLKII 1715 (4600)
T ss_pred EEecccccchHHHHHHhh----CCccChHHHHHHH
Confidence 999999999998876653 2245555444343
No 303
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.01 E-value=9.7e-06 Score=72.85 Aligned_cols=115 Identities=19% Similarity=0.238 Sum_probs=68.7
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCC-CCCceEEeecCCC-------CChHhHHHHHHHHHhcccCCCCCCceEEEEeC
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPN-YREAVMELNASDD-------RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDE 119 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~-------~~~~~i~~~i~~~~~~~~~~~~~~~~vviide 119 (331)
.++|||+.|+|||.+.-.+...+..+. ....|..+-..-. ...+.+....+.+ ..+.+++.+||
T Consensus 64 GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l--------~~~~~lLcfDE 135 (362)
T PF03969_consen 64 GLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADEL--------AKESRLLCFDE 135 (362)
T ss_pred eEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHH--------HhcCCEEEEee
Confidence 499999999999999999999886532 1222222110000 0111222222222 24567999999
Q ss_pred CCCCCHHHHHHHHHHHHHh-cCCcEEEEeeCCCC-C-------------CChhhhcccceeeecCC
Q 020071 120 ADSMTAGAQQALRRTMEIY-SNSTRFALACNVSS-K-------------IIEPIQSRCAIVRFSRL 170 (331)
Q Consensus 120 ~d~l~~~~~~~Ll~~le~~-~~~~~~I~~~~~~~-~-------------l~~~l~sr~~~i~~~~~ 170 (331)
++--.....-.|-++++.. ..++++|.|+|.+. . ..+.|+++|.++.+...
T Consensus 136 F~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~~ 201 (362)
T PF03969_consen 136 FQVTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDGG 201 (362)
T ss_pred eeccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecCC
Confidence 9876554444444444432 35677888887642 1 23677889999888765
No 304
>PHA02624 large T antigen; Provisional
Probab=97.98 E-value=5e-05 Score=71.35 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=65.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH---
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA--- 125 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~--- 125 (331)
++|+||+|+|||+++.++++.+ +...+.+|++.... ..+.. + -.+.+++++|++-.-.-
T Consensus 434 il~~GPpnTGKTtf~~sLl~~L-----~G~vlsVNsPt~ks--------~FwL~-p----l~D~~~~l~dD~t~~~~~~~ 495 (647)
T PHA02624 434 WLFKGPVNSGKTTLAAALLDLC-----GGKSLNVNCPPDKL--------NFELG-C----AIDQFMVVFEDVKGQPADNK 495 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-----CCeEEEeeCCcchh--------HHHhh-h----hhhceEEEeeeccccccccc
Confidence 7999999999999999999998 44456677555311 11111 1 24578999999842211
Q ss_pred --------HHHHHHHHHHHHh-cC------------Cc-EEEEeeCCCCCCChhhhccc-ceeeecCC
Q 020071 126 --------GAQQALRRTMEIY-SN------------ST-RFALACNVSSKIIEPIQSRC-AIVRFSRL 170 (331)
Q Consensus 126 --------~~~~~Ll~~le~~-~~------------~~-~~I~~~~~~~~l~~~l~sr~-~~i~~~~~ 170 (331)
+...-|+.+|+.. +- .+ +.|+|+ +...++.|++-|+ .++.|.+-
T Consensus 496 ~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~-Ney~iP~T~~~Rf~~~~~F~~k 562 (647)
T PHA02624 496 DLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTM-NEYLIPQTVKARFAKVLDFKPK 562 (647)
T ss_pred cCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEee-cCcccchhHHHHHHHhcccccc
Confidence 1125677777643 10 11 245555 5678889999996 45677543
No 305
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.96 E-value=6.4e-05 Score=59.19 Aligned_cols=108 Identities=18% Similarity=0.217 Sum_probs=66.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCC----------------------------CCChHh---HHHHH
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASD----------------------------DRGIDV---VRNKI 97 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~----------------------------~~~~~~---i~~~i 97 (331)
+.+|+++|.|||++|..++-...+.+....++.+-... ....+. .++..
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~~ 84 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEGW 84 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHHH
Confidence 67888889999999999988877665544444433221 000111 11111
Q ss_pred HHHHhcccCCCCCCceEEEEeCCCCCC---HHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhccc
Q 020071 98 KMFAQKKVTLPPGKHKVVVLDEADSMT---AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRC 162 (331)
Q Consensus 98 ~~~~~~~~~~~~~~~~vviide~d~l~---~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~ 162 (331)
+.+.... ..+.+.++|+||+...- --..+.+++++++.|.++-+|+|..+ .++.+..++
T Consensus 85 ~~a~~~~---~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~---~p~~l~e~A 146 (159)
T cd00561 85 AFAKEAI---ASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRN---APKELIEAA 146 (159)
T ss_pred HHHHHHH---hcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCC---CCHHHHHhC
Confidence 1111111 14678999999975441 12356788999999999999999876 344454444
No 306
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.95 E-value=5.5e-05 Score=60.06 Aligned_cols=24 Identities=42% Similarity=0.682 Sum_probs=21.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcC
Q 020071 49 LILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
++++||+|+|||+++..++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999988743
No 307
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.89 E-value=0.0014 Score=57.98 Aligned_cols=48 Identities=23% Similarity=0.209 Sum_probs=37.7
Q ss_pred eeeecCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHhcCCCHHHHHH
Q 020071 164 IVRFSRLSDEEILSRLMVVVQEEKV---PYVPEGLEAIIFTADGDMRQALN 211 (331)
Q Consensus 164 ~i~~~~~~~~~~~~~l~~~~~~~~~---~i~~~~~~~l~~~~~g~~r~~~~ 211 (331)
.+.+++++.+|+..+++-.....-+ ..++...+.+...++||++.+.+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~k 308 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELEK 308 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhcc
Confidence 7899999999999999877654332 34566778888888999998753
No 308
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.89 E-value=0.00093 Score=56.30 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=75.6
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC---------------CChHhHHH-------HHHHHHhccc
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD---------------RGIDVVRN-------KIKMFAQKKV 105 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~---------------~~~~~i~~-------~i~~~~~~~~ 105 (331)
.+++.|++|+|||+++..+...+...- ..++.+..... ...+.+.. .+........
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f--~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~ 92 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKF--DHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSP 92 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccC--CEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 389999999999999999988764321 11111111100 01111111 1222222111
Q ss_pred CCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh-cCCcEEEEeeCCCCCCChhhhcccceeeecCCCHHHHHHHHHH
Q 020071 106 TLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY-SNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMV 181 (331)
Q Consensus 106 ~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~-~~~~~~I~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~ 181 (331)
.-....+.++|+||+..- .-..+.+..++-.. .-++.+|+++.....+++.+|+-+..+-+-+.+..++..+++.
T Consensus 93 ~~k~~~~~LiIlDD~~~~-~~k~~~l~~~~~~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~~s~~dl~~i~~~ 168 (241)
T PF04665_consen 93 QKKNNPRFLIILDDLGDK-KLKSKILRQFFNNGRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFNNSKRDLENIYRN 168 (241)
T ss_pred ccCCCCCeEEEEeCCCCc-hhhhHHHHHHHhcccccceEEEEEeeecccCCHHHhhcceEEEEecCcHHHHHHHHHh
Confidence 111234779999998541 12234466665532 3467788888888999999988877665446777777655554
No 309
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.88 E-value=0.00011 Score=60.47 Aligned_cols=103 Identities=19% Similarity=0.324 Sum_probs=57.0
Q ss_pred Ce-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcccC-C-----------------
Q 020071 47 PN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVT-L----------------- 107 (331)
Q Consensus 47 ~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~-~----------------- 107 (331)
|+ ++|.||+|+||||.+-.++..+...+....++..+.......++++..-+... .++. .
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~-vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILG-VPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHT-EEEEESSTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhc-cccchhhcchhhHHHHHHHHHHH
Confidence 45 69999999999999999998876554444444444333222223222211111 0000 0
Q ss_pred CCCCceEEEEeCCCCCCH--HHHHHHHHHHHHh-cCCcEEEEeeCC
Q 020071 108 PPGKHKVVVLDEADSMTA--GAQQALRRTMEIY-SNSTRFALACNV 150 (331)
Q Consensus 108 ~~~~~~vviide~d~l~~--~~~~~Ll~~le~~-~~~~~~I~~~~~ 150 (331)
...+..+|+||-+.+... +..+.|.++++.. +..+.+++.++.
T Consensus 80 ~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~ 125 (196)
T PF00448_consen 80 RKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATM 125 (196)
T ss_dssp HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGG
T ss_pred hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEeccc
Confidence 012356999999887763 3456777777654 445666665543
No 310
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.86 E-value=5.4e-05 Score=68.43 Aligned_cols=94 Identities=20% Similarity=0.242 Sum_probs=55.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHh--cCCCCCCceEEeecCCCCChHhHHHHHHHH----------------Hhcc--cCCC
Q 020071 49 LILAGPPGTGKTTSILALAHEL--LGPNYREAVMELNASDDRGIDVVRNKIKMF----------------AQKK--VTLP 108 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l--~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~----------------~~~~--~~~~ 108 (331)
+++.|.||||||.+|..+++.+ ...+....++..|.... ..+++.+... .... ....
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~---~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLR---NKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKE 80 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHH---HHHHHHHhhhcccchhhhhhhhhHHHHhhccccccc
Confidence 6999999999999999999998 44433333444443221 1122211111 1000 0011
Q ss_pred CCCceEEEEeCCCCCCHH--------HHHHHHHHHHHhcCCcEEEEe
Q 020071 109 PGKHKVVVLDEADSMTAG--------AQQALRRTMEIYSNSTRFALA 147 (331)
Q Consensus 109 ~~~~~vviide~d~l~~~--------~~~~Ll~~le~~~~~~~~I~~ 147 (331)
.....+|||||+|++... ..+.|..++.. ..+.+++.
T Consensus 81 ~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~--~kv~v~f~ 125 (352)
T PF09848_consen 81 KNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR--AKVVVFFY 125 (352)
T ss_pred CCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc--CCEEEEEE
Confidence 346789999999999872 24677777776 33444443
No 311
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.86 E-value=0.00024 Score=61.69 Aligned_cols=155 Identities=16% Similarity=0.182 Sum_probs=82.9
Q ss_pred cccCHHHHHHH----HHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHH-----
Q 020071 27 IVGNLDAVARL----GIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKI----- 97 (331)
Q Consensus 27 ~ig~~~~~~~l----~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i----- 97 (331)
+.|.......+ ++.+..|....+++.||.|+|||.+..........-+...-.+.+|+.-....-.+.++.
T Consensus 26 l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~ 105 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLAL 105 (408)
T ss_pred eeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHH
Confidence 45655555444 444455766669999999999998877666552111122333455543221100111111
Q ss_pred --------------------HHHHhcccCCCCCCceEEEEeCCCCCCHHH-HHHHHHHHHH---hcCCcEEEEeeCCC--
Q 020071 98 --------------------KMFAQKKVTLPPGKHKVVVLDEADSMTAGA-QQALRRTMEI---YSNSTRFALACNVS-- 151 (331)
Q Consensus 98 --------------------~~~~~~~~~~~~~~~~vviide~d~l~~~~-~~~Ll~~le~---~~~~~~~I~~~~~~-- 151 (331)
....... ...+..-++|+||+|.+.+.. |--|.++++- ...-+.+|.+|...
T Consensus 106 e~~~~~k~~gsfte~l~~lL~~L~~~~--~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 106 ELNRIVKSFGSFTENLSKLLEALKKGD--ETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred HHhhhheeecccchhHHHHHHHHhcCC--CCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence 1000000 002234566777899886544 4445566652 22334555555443
Q ss_pred -CCCChhhhcccc---eeeecCCCHHHHHHHHHHHH
Q 020071 152 -SKIIEPIQSRCA---IVRFSRLSDEEILSRLMVVV 183 (331)
Q Consensus 152 -~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~ 183 (331)
+.+-+..+||+. ++-+++.+-++...++++..
T Consensus 184 lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 184 LELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 456688899973 34555566677777777654
No 312
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.84 E-value=0.00013 Score=58.90 Aligned_cols=30 Identities=50% Similarity=0.680 Sum_probs=25.8
Q ss_pred CeEEEeCCCCccHHHHHHHHHHHhcCCCCC
Q 020071 47 PNLILAGPPGTGKTTSILALAHELLGPNYR 76 (331)
Q Consensus 47 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~ 76 (331)
|-++|+|+||+|||++|+.+++.+..+.+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~ 31 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWR 31 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhh
Confidence 457999999999999999999999765443
No 313
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.82 E-value=5.1e-05 Score=63.19 Aligned_cols=71 Identities=24% Similarity=0.325 Sum_probs=40.5
Q ss_pred Ce-EEEeCCCCccHHHHHHHHHHHhc--C-CC--------CCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceE
Q 020071 47 PN-LILAGPPGTGKTTSILALAHELL--G-PN--------YREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKV 114 (331)
Q Consensus 47 ~~-~ll~G~~G~GKt~la~~l~~~l~--~-~~--------~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~v 114 (331)
|+ ++|||+||+|||++|+.++.... . .. ...+++.++.. ...+.+.+.+...... ..++.+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~~~~~~~d~~~~~l~g~~~~~v~~~d~~--~~~~~~~d~l~~~~~~-----~~~ydt 84 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGKTLVLSFDMSSKVLIGDENVDIADHDDM--PPIQAMVEFYVMQNIQ-----AVKYDN 84 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCCCEEEeccccchhccCCCCCceeecCCC--CCHHHHHHHHHHHHhc-----cccCCE
Confidence 44 79999999999999999864211 0 00 11122222111 1223444444432221 456899
Q ss_pred EEEeCCCCCC
Q 020071 115 VVLDEADSMT 124 (331)
Q Consensus 115 viide~d~l~ 124 (331)
||||+++.+.
T Consensus 85 VVIDsI~~l~ 94 (220)
T TIGR01618 85 IVIDNISALQ 94 (220)
T ss_pred EEEecHHHHH
Confidence 9999987763
No 314
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.80 E-value=0.00014 Score=76.07 Aligned_cols=142 Identities=20% Similarity=0.338 Sum_probs=98.2
Q ss_pred HHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcccC---CC-
Q 020071 33 AVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVT---LP- 108 (331)
Q Consensus 33 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~---~~- 108 (331)
....+..+...|+.| ++|-||.|+|||+++..+++.. +.+++.++..... +.++.+..+...... +.
T Consensus 428 ~la~~~~a~~~~~~p-illqG~tssGKtsii~~la~~~-----g~~~vrinnheht---d~qeyig~y~~~~~g~l~fre 498 (1856)
T KOG1808|consen 428 NLADLARAISSGKFP-ILLQGPTSSGKTSIIKELARAT-----GKNIVRINNHEHT---DLQEYIGTYVADDNGDLVFRE 498 (1856)
T ss_pred HHHHHHHHHhcCCCC-eEEecCcCcCchhHHHHHHHHh-----ccCceehhccccc---hHHHHHHhhhcCCCCCeeeeh
Confidence 344566777778776 9999999999999999999998 6677777654331 334444322221110 00
Q ss_pred ------CCCceEEEEeCCCCCCHHHHHHHHHHHHH-----hcCCcEEE--------EeeCCC-------CCCChhhhccc
Q 020071 109 ------PGKHKVVVLDEADSMTAGAQQALRRTMEI-----YSNSTRFA--------LACNVS-------SKIIEPIQSRC 162 (331)
Q Consensus 109 ------~~~~~vviide~d~l~~~~~~~Ll~~le~-----~~~~~~~I--------~~~~~~-------~~l~~~l~sr~ 162 (331)
.-++..+|+|+++..+.+..++|.++++. .|.+++++ +.+.++ ..+..++++|+
T Consensus 499 g~LV~Alr~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~rf 578 (1856)
T KOG1808|consen 499 GVLVQALRNGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRNRF 578 (1856)
T ss_pred hHHHHHHHhCCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhcccccc
Confidence 12467999999999999999999999986 22333322 222222 23457778888
Q ss_pred ceeeecCCCHHHHHHHHHHHH
Q 020071 163 AIVRFSRLSDEEILSRLMVVV 183 (331)
Q Consensus 163 ~~i~~~~~~~~~~~~~l~~~~ 183 (331)
..++|.-.+++++..++..++
T Consensus 579 ~e~~f~~~~e~e~~~i~~~~~ 599 (1856)
T KOG1808|consen 579 IELHFDDIGEEELEEILEHRC 599 (1856)
T ss_pred hhhhhhhcCchhhhhhhcccc
Confidence 889999999999998888765
No 315
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.80 E-value=0.00015 Score=58.81 Aligned_cols=44 Identities=32% Similarity=0.376 Sum_probs=35.2
Q ss_pred cCHHHHHHHHHHHHcC-CCCeEEEeCCCCccHHHHHHHHHHHhcC
Q 020071 29 GNLDAVARLGIIARDG-NMPNLILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 29 g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
.|.+++..+.+.+... ..++++|.+|+|+|||.++..++..+..
T Consensus 7 ~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~ 51 (184)
T PF04851_consen 7 YQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR 51 (184)
T ss_dssp HHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc
Confidence 3667777888888776 5567999999999999999987777643
No 316
>PRK13695 putative NTPase; Provisional
Probab=97.78 E-value=0.00046 Score=55.71 Aligned_cols=71 Identities=11% Similarity=0.229 Sum_probs=47.3
Q ss_pred CCceEEEEeCCCCC---CHHHHHHHHHHHHHhcCCcEEEEeeCCC--CCCChhhhcc--cceeeecCCCHHHHHHHHHHH
Q 020071 110 GKHKVVVLDEADSM---TAGAQQALRRTMEIYSNSTRFALACNVS--SKIIEPIQSR--CAIVRFSRLSDEEILSRLMVV 182 (331)
Q Consensus 110 ~~~~vviide~d~l---~~~~~~~Ll~~le~~~~~~~~I~~~~~~--~~l~~~l~sr--~~~i~~~~~~~~~~~~~l~~~ 182 (331)
.+..++++||+..+ .....+.+...++. ...+|+++++. ..+.+.+.++ +.++.+.+-+.+++...+..+
T Consensus 95 ~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~---~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~ 171 (174)
T PRK13695 95 EEADVIIIDEIGKMELKSPKFVKAVEEVLDS---EKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNR 171 (174)
T ss_pred CCCCEEEEECCCcchhhhHHHHHHHHHHHhC---CCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHH
Confidence 46789999997544 33445666666642 35677777753 2456677776 677888888888877776654
Q ss_pred H
Q 020071 183 V 183 (331)
Q Consensus 183 ~ 183 (331)
.
T Consensus 172 ~ 172 (174)
T PRK13695 172 L 172 (174)
T ss_pred H
Confidence 3
No 317
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.76 E-value=4.1e-05 Score=71.63 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=41.9
Q ss_pred CCCCCCccccCHHHHHHHHHHH----HcCC--CCeEEEeCCCCccHHHHHHHHHHHhc
Q 020071 20 RPTKVCDIVGNLDAVARLGIIA----RDGN--MPNLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 20 ~p~~~~~~ig~~~~~~~l~~~l----~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+...|+|+.|.++.+.++...+ .+.. .+.++|.||||+|||++++.+++.+.
T Consensus 71 ry~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 71 RYPAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cccchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 5567899999999999887776 3322 22379999999999999999999774
No 318
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.00012 Score=66.24 Aligned_cols=101 Identities=16% Similarity=0.214 Sum_probs=55.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcC----CCCCCceEEeecCCCCChHhHHHHHHHHHhcccC------------CCCCCc
Q 020071 49 LILAGPPGTGKTTSILALAHELLG----PNYREAVMELNASDDRGIDVVRNKIKMFAQKKVT------------LPPGKH 112 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~------------~~~~~~ 112 (331)
++|+||+|+||||++..++..+.. .+....++.+++......+++....+.. ..++. ....++
T Consensus 177 i~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~l-gvpv~~~~~~~~l~~~L~~~~~~ 255 (388)
T PRK12723 177 FILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIM-GIPVKAIESFKDLKEEITQSKDF 255 (388)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcC-CcceEeeCcHHHHHHHHHHhCCC
Confidence 799999999999999999987642 1222333444332211111111110000 00000 002457
Q ss_pred eEEEEeCCCCCCHHH--HHHHHHHHHHh--cCCcEEEEeeCC
Q 020071 113 KVVVLDEADSMTAGA--QQALRRTMEIY--SNSTRFALACNV 150 (331)
Q Consensus 113 ~vviide~d~l~~~~--~~~Ll~~le~~--~~~~~~I~~~~~ 150 (331)
.+|+||.+.+...+. ...+.++++.. +..+.+++.++.
T Consensus 256 DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~ 297 (388)
T PRK12723 256 DLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTT 297 (388)
T ss_pred CEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 899999999987543 35666676643 234566665544
No 319
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.71 E-value=0.00015 Score=59.64 Aligned_cols=100 Identities=22% Similarity=0.375 Sum_probs=48.9
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCC----CCC-------------hHhHHHHHHH---------HH
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASD----DRG-------------IDVVRNKIKM---------FA 101 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~----~~~-------------~~~i~~~i~~---------~~ 101 (331)
.+++.||+|||||.+|.+.+..+..++....++...+.- ..+ ...+.+.+.. ..
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~~~~~~~~~ 100 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELFGKEKLEELI 100 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-TTCHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHhChHhHHHHh
Confidence 479999999999999999997665433222222221110 000 0111111111 11
Q ss_pred h------cccCCCCC---CceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 102 Q------KKVTLPPG---KHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 102 ~------~~~~~~~~---~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
. .+..+-.+ ...+|||||++.++++ .+..++...+.++.+|++.+.
T Consensus 101 ~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~---~~k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 101 QNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPE---ELKMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HH---HHHHHHTTB-TT-EEEEEE--
T ss_pred hcCeEEEEehhhhcCccccceEEEEecccCCCHH---HHHHHHcccCCCcEEEEecCc
Confidence 0 01111112 3579999999999875 455566677788999998754
No 320
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.71 E-value=0.00054 Score=54.62 Aligned_cols=107 Identities=14% Similarity=0.196 Sum_probs=66.1
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCC-CCC-------------------------h----HhHHHHH
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASD-DRG-------------------------I----DVVRNKI 97 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~-~~~-------------------------~----~~i~~~i 97 (331)
-+.+|+++|.|||++|..++-...+.+...-++.+-... ..+ . ...++..
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~ 86 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAAW 86 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHHH
Confidence 378888899999999999998877654443333222111 000 0 1112222
Q ss_pred HHHHhcccCCCCCCceEEEEeCCC------CCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccc
Q 020071 98 KMFAQKKVTLPPGKHKVVVLDEAD------SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCA 163 (331)
Q Consensus 98 ~~~~~~~~~~~~~~~~vviide~d------~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~ 163 (331)
+.+..... .+++.+||+||+- .++. +.++++++..|+++-+|+|..+. ++.+...+.
T Consensus 87 ~~a~~~l~---~~~~DlvVLDEi~~A~~~gli~~---~~v~~lL~~rp~~~evVlTGR~~---p~~l~e~AD 149 (173)
T TIGR00708 87 QHAKEMLA---DPELDLVLLDELTYALKYGYLDV---EEVVEALQERPGHQHVIITGRGC---PQDLLELAD 149 (173)
T ss_pred HHHHHHHh---cCCCCEEEehhhHHHHHCCCcCH---HHHHHHHHhCCCCCEEEEECCCC---CHHHHHhCc
Confidence 22222221 4678999999975 4444 46788899999999999998754 445555543
No 321
>PRK14532 adenylate kinase; Provisional
Probab=97.70 E-value=0.0013 Score=53.85 Aligned_cols=23 Identities=52% Similarity=0.728 Sum_probs=21.6
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
++++.|+||+||||+++.+++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47999999999999999999987
No 322
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.70 E-value=0.00013 Score=55.91 Aligned_cols=25 Identities=44% Similarity=0.671 Sum_probs=21.8
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcC
Q 020071 48 NLILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
+++++||+|+|||..+..++..+..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 5899999999999999888887754
No 323
>PRK14974 cell division protein FtsY; Provisional
Probab=97.69 E-value=0.00035 Score=62.14 Aligned_cols=84 Identities=25% Similarity=0.359 Sum_probs=48.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC--ChHhHHHHHHH--------------------HHhcccC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR--GIDVVRNKIKM--------------------FAQKKVT 106 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~--~~~~i~~~i~~--------------------~~~~~~~ 106 (331)
++|+|++|+||||++..++..+...+. .+..+++...+ ..+++...... .....
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~~g~--~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~-- 218 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKKNGF--SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA-- 218 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCC--eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH--
Confidence 699999999999999999987754322 33333332211 11222211111 00000
Q ss_pred CCCCCceEEEEeCCCCCC--HHHHHHHHHHHHH
Q 020071 107 LPPGKHKVVVLDEADSMT--AGAQQALRRTMEI 137 (331)
Q Consensus 107 ~~~~~~~vviide~d~l~--~~~~~~Ll~~le~ 137 (331)
...++.+|+||.+.++. ....+.|.++.+.
T Consensus 219 -~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~ 250 (336)
T PRK14974 219 -KARGIDVVLIDTAGRMHTDANLMDELKKIVRV 250 (336)
T ss_pred -HhCCCCEEEEECCCccCCcHHHHHHHHHHHHh
Confidence 01245699999999885 4456677666653
No 324
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.68 E-value=0.00026 Score=65.52 Aligned_cols=134 Identities=17% Similarity=0.203 Sum_probs=85.8
Q ss_pred ccccCHHHHHHHHHHHHcC-------------CCCeEEEeCCCCccHHHHHHHHHHHhcC----CCCCCceEEeecCCCC
Q 020071 26 DIVGNLDAVARLGIIARDG-------------NMPNLILAGPPGTGKTTSILALAHELLG----PNYREAVMELNASDDR 88 (331)
Q Consensus 26 ~~ig~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKt~la~~l~~~l~~----~~~~~~~~~~~~~~~~ 88 (331)
.|.||+.+++.+.-++-+| .+ ++|+.|.|.+.|+.+.+.+.+.... .+.+..-+-+.+.-..
T Consensus 302 SI~GH~~vKkAillLLlGGvEk~L~NGshlRGDI-NiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTt 380 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDI-NILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTT 380 (818)
T ss_pred ccccHHHHHHHHHHHHhccceeccCCCceeccce-eEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEee
Confidence 5779999998776665543 22 3899999999999999999886531 1111111111111000
Q ss_pred ChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh-------------cCCcEEEEeeCCCC---
Q 020071 89 GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY-------------SNSTRFALACNVSS--- 152 (331)
Q Consensus 89 ~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~-------------~~~~~~I~~~~~~~--- 152 (331)
..+.-...++ +... --++++||.|||+|+|+.-..-++.++||.. ...|.++.++|...
T Consensus 381 D~eTGERRLE-AGAM----VLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Y 455 (818)
T KOG0479|consen 381 DQETGERRLE-AGAM----VLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQY 455 (818)
T ss_pred ccccchhhhh-cCce----EEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCcccccc
Confidence 0011111111 1111 1467899999999999999899999999942 36778888888631
Q ss_pred ----------CCChhhhccccee
Q 020071 153 ----------KIIEPIQSRCAIV 165 (331)
Q Consensus 153 ----------~l~~~l~sr~~~i 165 (331)
.++..+.|||..+
T Consensus 456 d~~k~P~eNIgLpDSLLSRFDLl 478 (818)
T KOG0479|consen 456 DQSKTPMENIGLPDSLLSRFDLL 478 (818)
T ss_pred CCCCChhhccCCcHHHHhhhcEE
Confidence 4778999998553
No 325
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.66 E-value=4.4e-05 Score=59.44 Aligned_cols=22 Identities=55% Similarity=0.921 Sum_probs=20.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++++|+||+||||+|+.+++.+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 5899999999999999999887
No 326
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.63 E-value=0.00036 Score=55.78 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=42.8
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccceeeecCC
Q 020071 110 GKHKVVVLDEA-DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRL 170 (331)
Q Consensus 110 ~~~~vviide~-d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~~i~~~~~ 170 (331)
.++.+++-||. ..+.++....+++++++.+....-|+.++....+..+.+.|+..++-..+
T Consensus 154 ~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl 215 (223)
T COG2884 154 NQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRL 215 (223)
T ss_pred cCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEE
Confidence 45789999996 67888889999999998765333333444556666777778766654433
No 327
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.63 E-value=0.00064 Score=67.05 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChH-----------hHHHHHH
Q 020071 30 NLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGID-----------VVRNKIK 98 (331)
Q Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----------~i~~~i~ 98 (331)
.+.....+.....+ +.+++.|+||||||++++.+.+.+...+....++-+.++ ..... .+...+.
T Consensus 325 ~~~Q~~Ai~~~~~~---~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApT-g~AA~~L~e~~g~~a~Tih~lL~ 400 (720)
T TIGR01448 325 SEEQKQALDTAIQH---KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPT-GRAAKRLGEVTGLTASTIHRLLG 400 (720)
T ss_pred CHHHHHHHHHHHhC---CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCc-hHHHHHHHHhcCCccccHHHHhh
Confidence 44444555554432 237999999999999999998877543211223322221 11111 2222221
Q ss_pred HHHhc-ccC--CCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 99 MFAQK-KVT--LPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 99 ~~~~~-~~~--~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
..... ... .......++||||+..++......|++.+ +.++++|++...
T Consensus 401 ~~~~~~~~~~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~~---~~~~rlilvGD~ 452 (720)
T TIGR01448 401 YGPDTFRHNHLEDPIDCDLLIVDESSMMDTWLALSLLAAL---PDHARLLLVGDT 452 (720)
T ss_pred ccCCccchhhhhccccCCEEEEeccccCCHHHHHHHHHhC---CCCCEEEEECcc
Confidence 10000 000 00134679999999999988777777654 467889988743
No 328
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.61 E-value=0.0014 Score=53.30 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=20.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|+||+||||+++.+++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 5899999999999999999988
No 329
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.60 E-value=0.00059 Score=56.12 Aligned_cols=99 Identities=23% Similarity=0.287 Sum_probs=65.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHH
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQ 128 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~ 128 (331)
++|.|+.|+|||++.+.+...+..+. +... ...+.. ... .+.-++.+||++.+++...
T Consensus 55 lvl~G~QG~GKStf~~~L~~~~~~d~-------~~~~--~~kd~~----~~l---------~~~~iveldEl~~~~k~~~ 112 (198)
T PF05272_consen 55 LVLVGKQGIGKSTFFRKLGPEYFSDS-------INDF--DDKDFL----EQL---------QGKWIVELDELDGLSKKDV 112 (198)
T ss_pred eeEecCCcccHHHHHHHHhHHhccCc-------cccC--CCcHHH----HHH---------HHhHheeHHHHhhcchhhH
Confidence 59999999999999999966542211 1111 111111 111 1245899999999998888
Q ss_pred HHHHHHHHH---------------hcCCcEEEEeeCCCCCCC-hhhhcccceeeecC
Q 020071 129 QALRRTMEI---------------YSNSTRFALACNVSSKII-EPIQSRCAIVRFSR 169 (331)
Q Consensus 129 ~~Ll~~le~---------------~~~~~~~I~~~~~~~~l~-~~l~sr~~~i~~~~ 169 (331)
+.|..++.. .+..++||.++|...-+. ++=-+|+.++.+..
T Consensus 113 ~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v~v~~ 169 (198)
T PF05272_consen 113 EALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPVEVSK 169 (198)
T ss_pred HHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEEEEcC
Confidence 888888752 345667888888866443 45556787777765
No 330
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.59 E-value=6.5e-05 Score=56.65 Aligned_cols=29 Identities=41% Similarity=0.746 Sum_probs=24.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEe
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMEL 82 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 82 (331)
+++.|++|+||||+++.+++.+ +..++.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~-----~~~~i~~ 30 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL-----GFPVISM 30 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH-----TCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHH-----CCeEEEe
Confidence 6899999999999999999998 5555443
No 331
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.59 E-value=0.001 Score=55.41 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=40.8
Q ss_pred CCceEEEEeC-CCCCCHHHHHHHHHHHHHh---cCCcEEEEeeCCCCCCChhhhccc
Q 020071 110 GKHKVVVLDE-ADSMTAGAQQALRRTMEIY---SNSTRFALACNVSSKIIEPIQSRC 162 (331)
Q Consensus 110 ~~~~vviide-~d~l~~~~~~~Ll~~le~~---~~~~~~I~~~~~~~~l~~~l~sr~ 162 (331)
..+.++|+|| ++.+.....+.|++++++. +....+|++|...+.+++-+..+.
T Consensus 188 ~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~l 244 (257)
T COG1119 188 KDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRL 244 (257)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEE
Confidence 4688999999 5777777888888888753 335678888999888888775543
No 332
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=97.59 E-value=0.001 Score=56.98 Aligned_cols=178 Identities=16% Similarity=0.167 Sum_probs=99.7
Q ss_pred CCCccccCHHH---HHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC------------
Q 020071 23 KVCDIVGNLDA---VARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD------------ 87 (331)
Q Consensus 23 ~~~~~ig~~~~---~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~------------ 87 (331)
...++++-... +..+...-+.|. ...+||.+|.|||+.++.+++... ..-.++.++...
T Consensus 70 ~~~~~l~tkt~r~~~~~~~~A~k~g~--l~~vyg~~g~gKt~a~~~y~~s~p----~~~l~~~~p~~~a~~~i~~i~~~~ 143 (297)
T COG2842 70 LAPDFLETKTVRRIFFRTRPASKTGS--LVVVYGYAGLGKTQAAKNYAPSNP----NALLIEADPSYTALVLILIICAAA 143 (297)
T ss_pred ccccccccchhHhHhhhhhhhhhcCc--eEEEeccccchhHHHHHhhcccCc----cceeecCChhhHHHHHHHHHHHHH
Confidence 55567776554 344444445555 379999999999999999998652 111122221110
Q ss_pred --CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC--------CCCChh
Q 020071 88 --RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVS--------SKIIEP 157 (331)
Q Consensus 88 --~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~--------~~l~~~ 157 (331)
.....+.+......... .+..+.+++||++.|...+.+.|.+..++.+-. ++++.++. +.....
T Consensus 144 ~~~~~~~~~d~~~~~~~~l----~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~--~vLvG~prL~~~l~~~~~~~~r 217 (297)
T COG2842 144 FGATDGTINDLTERLMIRL----RDTVRLIIVDEADRLPYRALEELRRIHDKTGIG--VVLVGMPRLFKVLRRPEDELSR 217 (297)
T ss_pred hcccchhHHHHHHHHHHHH----ccCcceeeeehhhccChHHHHHHHHHHHhhCce--EEEecChHHHhccccchHHHHH
Confidence 00012222222222222 456889999999999999999999999986644 44444332 111223
Q ss_pred hhcccce---eeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 020071 158 IQSRCAI---VRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT 216 (331)
Q Consensus 158 l~sr~~~---i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~ 216 (331)
+.+|..+ +.-.-++.+++..+...... ..++.....+....+|++|.+-..+...
T Consensus 218 l~srv~v~~~~~~~~~d~d~~~~~~~~~l~----~~~~~~v~~~~~~~~g~~~~L~~~l~~~ 275 (297)
T COG2842 218 LYSRVRVGKLLGEKFPDADELAEIAALVLP----TEDELVLMQVIKETEGNIRRLDKILAGA 275 (297)
T ss_pred HHHHhhhHhhhhhhhhhhHHHHHHHHhhCc----cchHHHHHHHHHhcchhHhHHHHHHhhh
Confidence 3333211 11111222344333333211 2456667777788889998887777543
No 333
>PRK06762 hypothetical protein; Provisional
Probab=97.58 E-value=0.0022 Score=51.23 Aligned_cols=22 Identities=41% Similarity=0.632 Sum_probs=21.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|+|++|+||||+|+.+++.+
T Consensus 5 i~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 5 IIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6999999999999999999987
No 334
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.58 E-value=0.00095 Score=61.58 Aligned_cols=29 Identities=34% Similarity=0.537 Sum_probs=24.5
Q ss_pred Ce-EEEeCCCCccHHHHHHHHHHHhcCCCC
Q 020071 47 PN-LILAGPPGTGKTTSILALAHELLGPNY 75 (331)
Q Consensus 47 ~~-~ll~G~~G~GKt~la~~l~~~l~~~~~ 75 (331)
|. ++|+|++|+||||++..++..+...+.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~ 124 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGL 124 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCC
Confidence 44 699999999999999999998865543
No 335
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.57 E-value=0.00093 Score=59.96 Aligned_cols=113 Identities=18% Similarity=0.274 Sum_probs=66.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc--CCCCCCceEEeecCCCCChHhHHHHH-------------HHHHhcccCCCCCCce
Q 020071 49 LILAGPPGTGKTTSILALAHELL--GPNYREAVMELNASDDRGIDVVRNKI-------------KMFAQKKVTLPPGKHK 113 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~i~~~i-------------~~~~~~~~~~~~~~~~ 113 (331)
+.|.||.|+||||..-.+|..+. .......++..+.......+++..-- +++..... ...++.
T Consensus 206 i~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~--~l~~~d 283 (407)
T COG1419 206 IALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIE--ALRDCD 283 (407)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHH--HhhcCC
Confidence 79999999999987777777665 34444455655554432223322110 11111000 034578
Q ss_pred EEEEeCCCCCCH--HHHHHHHHHHHHh-cCCcEEEEeeCCCCCCChhhhcccc
Q 020071 114 VVVLDEADSMTA--GAQQALRRTMEIY-SNSTRFALACNVSSKIIEPIQSRCA 163 (331)
Q Consensus 114 vviide~d~l~~--~~~~~Ll~~le~~-~~~~~~I~~~~~~~~l~~~l~sr~~ 163 (331)
+|+||=+.+-.. .....|..++... +..+.+++.++...+-...+..++.
T Consensus 284 ~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~ 336 (407)
T COG1419 284 VILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFS 336 (407)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhc
Confidence 999998876543 3445666666533 4566777877776666666665543
No 336
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.56 E-value=0.00063 Score=65.25 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=28.7
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 111 KHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 111 ~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
+..+|||||+-.++......|++.+ +.++++|++...
T Consensus 259 ~~dvlIiDEaSMvd~~l~~~ll~al---~~~~rlIlvGD~ 295 (586)
T TIGR01447 259 PLDVLVVDEASMVDLPLMAKLLKAL---PPNTKLILLGDK 295 (586)
T ss_pred cccEEEEcccccCCHHHHHHHHHhc---CCCCEEEEECCh
Confidence 3569999999999887766666655 567899998754
No 337
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.55 E-value=0.00052 Score=62.30 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcC
Q 020071 30 NLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
|.++...+.+.+......++++.|+.|+|||++.+++...+..
T Consensus 6 Q~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 6 QRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 4455556666666544445899999999999999999998854
No 338
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.55 E-value=0.0025 Score=64.12 Aligned_cols=182 Identities=15% Similarity=0.067 Sum_probs=105.9
Q ss_pred ccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCc-eEEeecCCCCChHhHHHH-HHH------
Q 020071 28 VGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREA-VMELNASDDRGIDVVRNK-IKM------ 99 (331)
Q Consensus 28 ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~i~~~-i~~------ 99 (331)
+|++..++.+...+.......+=+||..|+||||+++.+.+....-...++ ++.+.-+.......+.+. +..
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~ 240 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE 240 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc
Confidence 999999999999988877655899999999999999999998752111222 222222212111111111 110
Q ss_pred ---------HHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh-c---CCcEEEEeeCCCCCCChhhhcccceee
Q 020071 100 ---------FAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY-S---NSTRFALACNVSSKIIEPIQSRCAIVR 166 (331)
Q Consensus 100 ---------~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~-~---~~~~~I~~~~~~~~l~~~l~sr~~~i~ 166 (331)
..........+++-++++||+=.= .. ++.+.-| | .++.+++||.+.. +-.....+...++
T Consensus 241 ~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~d----w~~I~~~~p~~~~g~KvvlTTRs~~-V~~~~m~~~~~~~ 313 (889)
T KOG4658|consen 241 EWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VD----WDKIGVPFPSRENGSKVVLTTRSEE-VCGRAMGVDYPIE 313 (889)
T ss_pred ccchhhHHHHHHHHHHHhccCceEEEEeccccc--cc----HHhcCCCCCCccCCeEEEEEeccHh-hhhccccCCcccc
Confidence 000000111456789999987221 11 3333322 2 2378888886532 2112122355677
Q ss_pred ecCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHhcCCCHHHHHHHHHHH
Q 020071 167 FSRLSDEEILSRLMVVVQEEKVPY---VPEGLEAIIFTADGDMRQALNNLQAT 216 (331)
Q Consensus 167 ~~~~~~~~~~~~l~~~~~~~~~~i---~~~~~~~l~~~~~g~~r~~~~~l~~~ 216 (331)
...+++++.-..+++.+......- -++.++.+++.++|-|-.+..+-..+
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~m 366 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLL 366 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHh
Confidence 888888898888888765432221 25678888999998776544443433
No 339
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.55 E-value=0.00078 Score=54.54 Aligned_cols=101 Identities=16% Similarity=0.167 Sum_probs=62.2
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCC----------------------C------CC---hHhHHHH
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASD----------------------D------RG---IDVVRNK 96 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~----------------------~------~~---~~~i~~~ 96 (331)
.+++||++|.|||++|..++-...+.+....++.+--.. . .. ....++.
T Consensus 24 ~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~~ 103 (191)
T PRK05986 24 LLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAAREG 103 (191)
T ss_pred eEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHHH
Confidence 489999999999999999988876654333223221111 0 00 0111122
Q ss_pred HHHHHhcccCCCCCCceEEEEeCCCCCCH---HHHHHHHHHHHHhcCCcEEEEeeCCC
Q 020071 97 IKMFAQKKVTLPPGKHKVVVLDEADSMTA---GAQQALRRTMEIYSNSTRFALACNVS 151 (331)
Q Consensus 97 i~~~~~~~~~~~~~~~~vviide~d~l~~---~~~~~Ll~~le~~~~~~~~I~~~~~~ 151 (331)
.+.+.... ..+++.+||+||+-..-. =..+.++++++..|+++-+|+|..+.
T Consensus 104 ~~~a~~~l---~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 104 WEEAKRML---ADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHH---hCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 22222222 156789999999743311 12456888889999999999998753
No 340
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.54 E-value=0.00068 Score=56.48 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=32.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHH
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKI 97 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i 97 (331)
++++||||+|||+++..++...... +..++.++... ...+.+.+..
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~~~ 60 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQIA 60 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHHHH
Confidence 6999999999999999998876544 34566666654 3444444443
No 341
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.53 E-value=0.0057 Score=55.80 Aligned_cols=92 Identities=22% Similarity=0.264 Sum_probs=60.8
Q ss_pred CceEEEEeCCCCCC--------HHHHHHHHHHHHHhc----CCcEEEEeeCCC------C--CCChhhhcc---------
Q 020071 111 KHKVVVLDEADSMT--------AGAQQALRRTMEIYS----NSTRFALACNVS------S--KIIEPIQSR--------- 161 (331)
Q Consensus 111 ~~~vviide~d~l~--------~~~~~~Ll~~le~~~----~~~~~I~~~~~~------~--~l~~~l~sr--------- 161 (331)
.+-+|++||++.+- ...-+.|+.++++.. +++-++++.++. . .-.++|.+|
T Consensus 239 ~GLlI~lDE~e~l~kl~~~~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~~~~~~ 318 (416)
T PF10923_consen 239 KGLLILLDELENLYKLRNDQAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEEFFADD 318 (416)
T ss_pred CceEEEEechHHHHhcCChHHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCccccccccHHHHHHHhccccccc
Confidence 45799999998662 234678888887643 466677776541 1 124666665
Q ss_pred ------cceeeecCCCHHHHHHHHHHHHHh------cCCCCCHHHHHHHHHhc
Q 020071 162 ------CAIVRFSRLSDEEILSRLMVVVQE------EKVPYVPEGLEAIIFTA 202 (331)
Q Consensus 162 ------~~~i~~~~~~~~~~~~~l~~~~~~------~~~~i~~~~~~~l~~~~ 202 (331)
..++.+.|++.+++...+.+...- ....++++.+..+++.+
T Consensus 319 ~~~n~~~pvIrL~~l~~eel~~l~~klr~i~a~~~~~~~~v~d~~l~~~~~~~ 371 (416)
T PF10923_consen 319 GFDNLRAPVIRLQPLTPEELLELLEKLRDIYAEAYGYESRVDDEELKAFAQHV 371 (416)
T ss_pred cccCccCceecCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Confidence 345899999999998887776441 22456777777776554
No 342
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.52 E-value=0.00057 Score=58.64 Aligned_cols=24 Identities=46% Similarity=0.643 Sum_probs=21.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcC
Q 020071 49 LILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
++|+|+||+||||+|+.+++.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999998843
No 343
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.52 E-value=0.00071 Score=55.16 Aligned_cols=41 Identities=20% Similarity=0.389 Sum_probs=25.6
Q ss_pred CceEEEEeCCCCCCH-HHHHHHHHHHHHhcCCcEEEEeeCCC
Q 020071 111 KHKVVVLDEADSMTA-GAQQALRRTMEIYSNSTRFALACNVS 151 (331)
Q Consensus 111 ~~~vviide~d~l~~-~~~~~Ll~~le~~~~~~~~I~~~~~~ 151 (331)
+..++||||+|.+.. .....+..++...+....+++.+..+
T Consensus 129 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~ 170 (201)
T smart00487 129 NVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATP 170 (201)
T ss_pred HCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCC
Confidence 345999999999986 44555555555444445555544444
No 344
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.50 E-value=0.0012 Score=56.98 Aligned_cols=35 Identities=34% Similarity=0.497 Sum_probs=28.6
Q ss_pred HHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhc
Q 020071 37 LGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 37 l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+....+.+...++++.||+|+||||+.+.++..+.
T Consensus 102 l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 102 LPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred HHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 34444566667899999999999999999999874
No 345
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.49 E-value=0.00052 Score=55.99 Aligned_cols=25 Identities=44% Similarity=0.549 Sum_probs=21.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGP 73 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~ 73 (331)
++++||||+|||+++..++......
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~ 26 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR 26 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 6899999999999999988876433
No 346
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.49 E-value=0.00091 Score=66.22 Aligned_cols=112 Identities=18% Similarity=0.226 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC--------CCh--HhHHHHHHH
Q 020071 30 NLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD--------RGI--DVVRNKIKM 99 (331)
Q Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~--------~~~--~~i~~~i~~ 99 (331)
.+.....+...+.++. .+++.|++|+|||++++.+...+...+ ..++-+.++.. .+. ..+...+..
T Consensus 354 s~~Q~~Av~~i~~s~~--~~il~G~aGTGKTtll~~i~~~~~~~g--~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~ 429 (744)
T TIGR02768 354 SEEQYEAVRHVTGSGD--IAVVVGRAGTGKSTMLKAAREAWEAAG--YRVIGAALSGKAAEGLQAESGIESRTLASLEYA 429 (744)
T ss_pred CHHHHHHHHHHhcCCC--EEEEEecCCCCHHHHHHHHHHHHHhCC--CeEEEEeCcHHHHHHHHhccCCceeeHHHHHhh
Confidence 3455555555554432 369999999999999999988764432 23333322110 010 112222111
Q ss_pred HHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeC
Q 020071 100 FAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACN 149 (331)
Q Consensus 100 ~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~ 149 (331)
+.... ....+..++||||+..++......|++.... .++++|++..
T Consensus 430 ~~~~~--~~~~~~~llIvDEasMv~~~~~~~Ll~~~~~--~~~kliLVGD 475 (744)
T TIGR02768 430 WANGR--DLLSDKDVLVIDEAGMVGSRQMARVLKEAEE--AGAKVVLVGD 475 (744)
T ss_pred hccCc--ccCCCCcEEEEECcccCCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 11110 0124578999999999998887777776554 4577888763
No 347
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.44 E-value=0.00078 Score=56.98 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=20.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGP 73 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~ 73 (331)
+++.|++|+|||+++..++..+..+
T Consensus 27 ~~i~G~~G~GKTtl~~~~~~~~~~~ 51 (230)
T PRK08533 27 ILIEGDESTGKSILSQRLAYGFLQN 51 (230)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC
Confidence 6999999999999987776655433
No 348
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.44 E-value=0.0013 Score=55.85 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=26.2
Q ss_pred HHHHHHHcCCCCe--EEEeCCCCccHHHHHHHHHHHh
Q 020071 36 RLGIIARDGNMPN--LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 36 ~l~~~l~~~~~~~--~ll~G~~G~GKt~la~~l~~~l 70 (331)
.|...+.+|-++. ++++|++|+|||+++..++...
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 3455555554333 6999999999999999997664
No 349
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.42 E-value=0.00016 Score=55.27 Aligned_cols=33 Identities=36% Similarity=0.609 Sum_probs=27.7
Q ss_pred CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEe
Q 020071 45 NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMEL 82 (331)
Q Consensus 45 ~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 82 (331)
..|++|++|-||+|||+++..++..+ +..++.+
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~-----~~~~i~i 38 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT-----GLEYIEI 38 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh-----CCceEeh
Confidence 45789999999999999999999877 5555544
No 350
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.41 E-value=0.0011 Score=63.91 Aligned_cols=99 Identities=20% Similarity=0.274 Sum_probs=56.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCC-CCceEEeecCCCCChHhHHHHHH------------------------HHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNY-REAVMELNASDDRGIDVVRNKIK------------------------MFAQK 103 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~i~~~i~------------------------~~~~~ 103 (331)
.+++|+||||||+++..+...+..... ....+.+..+...-...+.+.+. .+...
T Consensus 170 ~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlLg~ 249 (615)
T PRK10875 170 SVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLLGA 249 (615)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHhCc
Confidence 699999999999999998877643111 11123333322211112222111 11111
Q ss_pred -ccC----C---CCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 104 -KVT----L---PPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 104 -~~~----~---~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
+.. . ..-...++||||+-.+.......|++.+ ++++++|++.+.
T Consensus 250 ~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al---~~~~rlIlvGD~ 301 (615)
T PRK10875 250 QPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDAL---PPHARVIFLGDR 301 (615)
T ss_pred CCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhc---ccCCEEEEecch
Confidence 000 0 0112369999999999877777777765 467899998754
No 351
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=97.41 E-value=0.0019 Score=57.54 Aligned_cols=112 Identities=21% Similarity=0.325 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEe-ecCCCCChHhHHHHHHHHHhcccCCCCCC
Q 020071 34 VARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMEL-NASDDRGIDVVRNKIKMFAQKKVTLPPGK 111 (331)
Q Consensus 34 ~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~i~~~~~~~~~~~~~~ 111 (331)
+..++.++++-.-++ ++|||||++|||.++..+.+-+ +..++.+ |..+. +--.| -.+
T Consensus 249 l~~lk~~Lkg~PKKnClvi~GPPdTGKS~F~~SLi~Fl-----~GkViSf~Ns~Sh------------FWLqP----L~d 307 (432)
T PF00519_consen 249 LIALKQFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFL-----KGKVISFVNSKSH------------FWLQP----LAD 307 (432)
T ss_dssp HHHHHHHHHTBTTSSEEEEESSCCCSHHHHHHHHHHHH-----TSEEE-GGGTTSC------------GGGGG----GCT
T ss_pred HHHHHHHHhCCCcccEEEEECCCCCchhHHHHHHHHHh-----CCEEEEecCCCCc------------ccccc----hhc
Confidence 345666776533334 8999999999999999999988 4444432 32221 11122 356
Q ss_pred ceEEEEeCCCCCCHHHHH----HHHHHHHHhcC-------------CcEEEEeeCCC---CCCChhhhcccceeeecC
Q 020071 112 HKVVVLDEADSMTAGAQQ----ALRRTMEIYSN-------------STRFALACNVS---SKIIEPIQSRCAIVRFSR 169 (331)
Q Consensus 112 ~~vviide~d~l~~~~~~----~Ll~~le~~~~-------------~~~~I~~~~~~---~~l~~~l~sr~~~i~~~~ 169 (331)
.++.+|||+- ....+ -|++.++..+- --++++++|.. +.-..-|.||...+.|+.
T Consensus 308 ~Ki~llDDAT---~~cW~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~YLhSRi~~f~F~n 382 (432)
T PF00519_consen 308 AKIALLDDAT---YPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWKYLHSRITCFEFPN 382 (432)
T ss_dssp -SSEEEEEE----HHHHHHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCHHHCTTEEEEE--S
T ss_pred CcEEEEcCCc---ccHHHHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhhhhhheEEEEEcCC
Confidence 8899999883 33333 24455553220 01366777642 344688999998887763
No 352
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.41 E-value=0.0014 Score=60.59 Aligned_cols=96 Identities=19% Similarity=0.282 Sum_probs=53.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc--CCCCCCceEEeecCCCC--ChHhHHHH----------------HHHHHhcccCCC
Q 020071 49 LILAGPPGTGKTTSILALAHELL--GPNYREAVMELNASDDR--GIDVVRNK----------------IKMFAQKKVTLP 108 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~--~~~~i~~~----------------i~~~~~~~~~~~ 108 (331)
++|.||+|+||||++..++..+. ..+ ..+..++..... ..+++... +......
T Consensus 224 i~~vGptGvGKTTt~~kLA~~~~~~~~g--~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~----- 296 (424)
T PRK05703 224 VALVGPTGVGKTTTLAKLAARYALLYGK--KKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ----- 296 (424)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCC--CeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-----
Confidence 79999999999999999988764 222 233333333221 11111110 0000000
Q ss_pred CCCceEEEEeCCCCCCH--HHHHHHHHHHHH--hcCCcEEEEeeCCC
Q 020071 109 PGKHKVVVLDEADSMTA--GAQQALRRTMEI--YSNSTRFALACNVS 151 (331)
Q Consensus 109 ~~~~~vviide~d~l~~--~~~~~Ll~~le~--~~~~~~~I~~~~~~ 151 (331)
..++.+|+||.+.+... ...+.|..+++. .+..+.+++.++..
T Consensus 297 ~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~ 343 (424)
T PRK05703 297 LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK 343 (424)
T ss_pred hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC
Confidence 23478999998876543 345667777762 23345566655443
No 353
>PRK08118 topology modulation protein; Reviewed
Probab=97.39 E-value=0.0002 Score=57.36 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=22.3
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhc
Q 020071 48 NLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
.+++.||+|+||||+|+.+++.+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999983
No 354
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.38 E-value=0.0031 Score=54.55 Aligned_cols=95 Identities=23% Similarity=0.333 Sum_probs=50.7
Q ss_pred CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEee-------cCC---CCChHhHHHHHHHHHhcccCCCCCCceEEE
Q 020071 47 PNLILAGPPGTGKTTSILALAHELLGPNYREAVMELN-------ASD---DRGIDVVRNKIKMFAQKKVTLPPGKHKVVV 116 (331)
Q Consensus 47 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-------~~~---~~~~~~i~~~i~~~~~~~~~~~~~~~~vvi 116 (331)
|-++++|-||+|||++|+.+.+.+...+.. +..++ ... .......+..+........ +...+||
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~--v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l----s~~~iVI 75 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKE--VVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL----SKDTIVI 75 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT----EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH----TT-SEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCE--EEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh----ccCeEEE
Confidence 557999999999999999999988654322 22222 111 1123345555555555443 3357999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHhcCCcEEEEee
Q 020071 117 LDEADSMTAGAQQALRRTMEIYSNSTRFALAC 148 (331)
Q Consensus 117 ide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~ 148 (331)
+|+..++ +.-.-.|..+-........+|.+.
T Consensus 76 ~Dd~nYi-Kg~RYelyclAr~~~~~~c~i~~~ 106 (270)
T PF08433_consen 76 LDDNNYI-KGMRYELYCLARAYGTTFCVIYCD 106 (270)
T ss_dssp E-S---S-HHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred EeCCchH-HHHHHHHHHHHHHcCCCEEEEEEC
Confidence 9988776 344556666665555444444443
No 355
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0015 Score=64.53 Aligned_cols=157 Identities=17% Similarity=0.199 Sum_probs=100.3
Q ss_pred CCccccC-HHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCC-----CceEEeecCC----CCChHhH
Q 020071 24 VCDIVGN-LDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYR-----EAVMELNASD----DRGIDVV 93 (331)
Q Consensus 24 ~~~~ig~-~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~-----~~~~~~~~~~----~~~~~~i 93 (331)
++.++|+ ++.+++..+.+......|-+|.|++|+|||.++..+++.....+.. ..++.++... .....++
T Consensus 185 ldPvigr~deeirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~ 264 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEF 264 (898)
T ss_pred CCCccCCchHHHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHH
Confidence 5678887 8888888888877766668999999999999999999987643221 1233333221 1122345
Q ss_pred HHHHHHHHhcccCCCCCCceEEEEeCCCCCCH--------HHHHHHHHHHHHhcCCcEEEEeeCCC-----CCCChhhhc
Q 020071 94 RNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA--------GAQQALRRTMEIYSNSTRFALACNVS-----SKIIEPIQS 160 (331)
Q Consensus 94 ~~~i~~~~~~~~~~~~~~~~vviide~d~l~~--------~~~~~Ll~~le~~~~~~~~I~~~~~~-----~~l~~~l~s 160 (331)
++.++......-. .+++-|++|||++.+.. ++.+.|...+.. . ...+|.+|+.. -.-.|++.+
T Consensus 265 E~rlk~l~k~v~~--~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~r-g-~l~~IGatT~e~Y~k~iekdPalEr 340 (898)
T KOG1051|consen 265 EERLKELLKEVES--GGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLAR-G-GLWCIGATTLETYRKCIEKDPALER 340 (898)
T ss_pred HHHHHHHHHHHhc--CCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhc-C-CeEEEecccHHHHHHHHhhCcchhh
Confidence 5555544443211 34578999999998843 223333333332 2 37778876542 134588999
Q ss_pred ccceeeecCCCHHHHHHHHHHHHH
Q 020071 161 RCAIVRFSRLSDEEILSRLMVVVQ 184 (331)
Q Consensus 161 r~~~i~~~~~~~~~~~~~l~~~~~ 184 (331)
|++.+.+.-|+..+...++.....
T Consensus 341 rw~l~~v~~pS~~~~~~iL~~l~~ 364 (898)
T KOG1051|consen 341 RWQLVLVPIPSVENLSLILPGLSE 364 (898)
T ss_pred CcceeEeccCcccchhhhhhhhhh
Confidence 999888888887766656555433
No 356
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.38 E-value=0.0029 Score=53.06 Aligned_cols=48 Identities=31% Similarity=0.422 Sum_probs=33.7
Q ss_pred HHHHHHHcCCCCe--EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecC
Q 020071 36 RLGIIARDGNMPN--LILAGPPGTGKTTSILALAHELLGPNYREAVMELNAS 85 (331)
Q Consensus 36 ~l~~~l~~~~~~~--~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 85 (331)
.|...+..|-.+. ++++|+||+|||+++..++...... +..++.++..
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e 56 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTE 56 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECC
Confidence 3555555554433 6999999999999999999887544 3455556544
No 357
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.37 E-value=0.0022 Score=56.28 Aligned_cols=114 Identities=20% Similarity=0.243 Sum_probs=64.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCC-CCCceEEeecCC------CCCh-HhHHHHHHHHHhcccCCCCCCceEEEEeCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPN-YREAVMELNASD------DRGI-DVVRNKIKMFAQKKVTLPPGKHKVVVLDEA 120 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~------~~~~-~~i~~~i~~~~~~~~~~~~~~~~vviide~ 120 (331)
+++||+-|.|||.+.-.+...+..+. ....|..+-..- ..|. +.+......+ .++.+|+.+||+
T Consensus 68 lYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~--------~~~~~vLCfDEF 139 (367)
T COG1485 68 LYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADEL--------AAETRVLCFDEF 139 (367)
T ss_pred EEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHH--------HhcCCEEEeeee
Confidence 89999999999999999999886543 111211110000 0000 1111111111 356889999999
Q ss_pred CCCCHHHHHHHHHHHHHh-cCCcEEEEeeCCC-C----------CCC---hhhhcccceeeecCC
Q 020071 121 DSMTAGAQQALRRTMEIY-SNSTRFALACNVS-S----------KII---EPIQSRCAIVRFSRL 170 (331)
Q Consensus 121 d~l~~~~~~~Ll~~le~~-~~~~~~I~~~~~~-~----------~l~---~~l~sr~~~i~~~~~ 170 (331)
+--.....-.|-++++.- ..++.++.|+|.. + ..+ +.|+++|.++.+..+
T Consensus 140 ~VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~v~~vD~~ 204 (367)
T COG1485 140 EVTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEVVNVDGP 204 (367)
T ss_pred eecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhcccchhHHhhHHHHHHHHHheEEEEecCC
Confidence 766554444444555542 3466777777653 2 222 566788887655544
No 358
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.37 E-value=0.0011 Score=57.10 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGP 73 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~ 73 (331)
++++|+||+|||+++..++......
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~ 63 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASR 63 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 6999999999999999988765433
No 359
>PRK14528 adenylate kinase; Provisional
Probab=97.36 E-value=0.0061 Score=49.75 Aligned_cols=24 Identities=46% Similarity=0.796 Sum_probs=22.0
Q ss_pred CeEEEeCCCCccHHHHHHHHHHHh
Q 020071 47 PNLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 47 ~~~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.+++.||||+|||++++.+++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999887
No 360
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.34 E-value=0.0021 Score=57.89 Aligned_cols=26 Identities=38% Similarity=0.726 Sum_probs=23.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPN 74 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~ 74 (331)
++|.||.|+||||++..++..+...+
T Consensus 244 I~LVGptGvGKTTTiaKLA~~L~~~G 269 (436)
T PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGKK 269 (436)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 79999999999999999999886543
No 361
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.34 E-value=0.0023 Score=53.95 Aligned_cols=48 Identities=29% Similarity=0.382 Sum_probs=32.6
Q ss_pred HHHHHHHcCCCCe--EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecC
Q 020071 36 RLGIIARDGNMPN--LILAGPPGTGKTTSILALAHELLGPNYREAVMELNAS 85 (331)
Q Consensus 36 ~l~~~l~~~~~~~--~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 85 (331)
.|.+.+.+|-.+. ++++|+||+|||+++..++...... +..++.++..
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e 60 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE 60 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC
Confidence 3455555554333 5999999999999999999876443 3344555544
No 362
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.33 E-value=0.00065 Score=53.32 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=20.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|+|++|+||||+++.+++.+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 5899999999999999999986
No 363
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.33 E-value=0.0011 Score=52.96 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=56.3
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCC--h-HhHHH------------HHHHHHhcccCCCCCCc
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRG--I-DVVRN------------KIKMFAQKKVTLPPGKH 112 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--~-~~i~~------------~i~~~~~~~~~~~~~~~ 112 (331)
.+.|.||+|+|||++.+.++....... --+.++..+... . +..+. ..+-.....+ ..++
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral---~~~p 101 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKPDS---GEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARAL---ARNA 101 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHH---hcCC
Confidence 479999999999999999987653211 112232211100 0 00000 0000011111 3457
Q ss_pred eEEEEeCC-CCCCHHHHHHHHHHHHHhc-CCcEEEEeeCCC
Q 020071 113 KVVVLDEA-DSMTAGAQQALRRTMEIYS-NSTRFALACNVS 151 (331)
Q Consensus 113 ~vviide~-d~l~~~~~~~Ll~~le~~~-~~~~~I~~~~~~ 151 (331)
+++++||. ..+.......+.+.+.+.. .+..+|+++.+.
T Consensus 102 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 142 (163)
T cd03216 102 RLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142 (163)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 89999996 4678888888888887653 245566666653
No 364
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=97.33 E-value=0.0044 Score=46.86 Aligned_cols=82 Identities=16% Similarity=0.125 Sum_probs=63.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--------c--------------------------cC
Q 020071 241 KNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY--------E--------------------------MA 286 (331)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~--------~--------------------------~~ 286 (331)
|++++++..|+...+.+++..|...|++|..++..+.+-++.+ + ++
T Consensus 2 F~L~Da~L~G~~~ra~riL~~L~~Eg~ep~~lLw~L~rElr~L~~l~~~~~~~~l~~~~~~~rIW~~Rq~l~~~Al~Rls 81 (125)
T PF14840_consen 2 FQLIDALLAGDAKRALRILQGLQAEGVEPPILLWALQRELRLLIQLKQALAQQPLQQLFKQLRIWQKRQPLYQQALQRLS 81 (125)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTTTS-HHHHHHHHTT-CCHHHHHHHHHHHS-
T ss_pred CcHHHHHHCCCHHHHHHHHHHHHHCCccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCHhHHHHHHHHHHcCC
Confidence 7899999999999999999999999999999998887633321 0 22
Q ss_pred hHhHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHH
Q 020071 287 EHLKLEFMKEAGFAHMRICD--GVGSYLQLCGLLAKLS 322 (331)
Q Consensus 287 ~~~~~~~~~~l~~~~~~l~~--~~~~~l~l~~l~~~l~ 322 (331)
.....+++..+...|..+|. +.++...|+.+++.+|
T Consensus 82 ~~~L~~ll~~~a~iD~~iKg~~~~~~W~~L~~L~L~lc 119 (125)
T PF14840_consen 82 LQQLEQLLQLLAQIDRAIKGNYQGDPWDELEQLSLLLC 119 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTSTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHc
Confidence 23335889999999999994 4588889999999887
No 365
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.33 E-value=0.0022 Score=64.78 Aligned_cols=112 Identities=15% Similarity=0.127 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC--------CCh--HhHHHHHHH
Q 020071 30 NLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD--------RGI--DVVRNKIKM 99 (331)
Q Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~--------~~~--~~i~~~i~~ 99 (331)
.+.....+...+.+.. .+++.|.+|+|||++.+.+.+.+... +..++-+.++.. .++ ..+...+..
T Consensus 348 s~eQr~Av~~il~s~~--v~vv~G~AGTGKTT~l~~~~~~~e~~--G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~ 423 (988)
T PRK13889 348 SGEQADALAHVTDGRD--LGVVVGYAGTGKSAMLGVAREAWEAA--GYEVRGAALSGIAAENLEGGSGIASRTIASLEHG 423 (988)
T ss_pred CHHHHHHHHHHhcCCC--eEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEecCcHHHHHHHhhccCcchhhHHHHHhh
Confidence 4445555555554433 36899999999999988887765433 222333322110 111 122222221
Q ss_pred HHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeC
Q 020071 100 FAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACN 149 (331)
Q Consensus 100 ~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~ 149 (331)
+.... .......++||||+..++......|++..+. .++++|++..
T Consensus 424 ~~~~~--~~l~~~~vlIVDEASMv~~~~m~~LL~~a~~--~garvVLVGD 469 (988)
T PRK13889 424 WGQGR--DLLTSRDVLVIDEAGMVGTRQLERVLSHAAD--AGAKVVLVGD 469 (988)
T ss_pred hcccc--cccccCcEEEEECcccCCHHHHHHHHHhhhh--CCCEEEEECC
Confidence 11111 0123567999999999998888888877664 4577888764
No 366
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.31 E-value=0.0026 Score=56.20 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|+||+||||+|+.+++.+
T Consensus 5 iil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 5 ILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEcCCCCCHHHHHHHHHHHC
Confidence 6999999999999999999987
No 367
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.31 E-value=0.0038 Score=50.47 Aligned_cols=22 Identities=45% Similarity=0.860 Sum_probs=21.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|.||||+||||+|+.+++.+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999999986
No 368
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.31 E-value=0.0022 Score=51.45 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=21.2
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+++.|++|+|||++|..++..+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 37999999999999999999886
No 369
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.29 E-value=0.0027 Score=50.21 Aligned_cols=95 Identities=17% Similarity=0.260 Sum_probs=55.9
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC-----------------CChHhHHHHHHHHHhcccCCCCC
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD-----------------RGIDVVRNKIKMFAQKKVTLPPG 110 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-----------------~~~~~i~~~i~~~~~~~~~~~~~ 110 (331)
.+.|.|+.|+|||++.+.++..+... .--+.++.... .+..+. ..+.- . ..+ ..
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~-~r~~l-~-~~l---~~ 97 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQR-QRVAL-A-RAL---LL 97 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccCCHHHHHhceEEEeeCCHHHH-HHHHH-H-HHH---hc
Confidence 37999999999999999998876421 11122322111 000111 11111 1 111 23
Q ss_pred CceEEEEeCCC-CCCHHHHHHHHHHHHHhcC-CcEEEEeeCCC
Q 020071 111 KHKVVVLDEAD-SMTAGAQQALRRTMEIYSN-STRFALACNVS 151 (331)
Q Consensus 111 ~~~vviide~d-~l~~~~~~~Ll~~le~~~~-~~~~I~~~~~~ 151 (331)
+..++++||.. .+.......+.+.+.+... +..+++++.+.
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 140 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 47899999975 6777788888888876433 35566666653
No 370
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.29 E-value=0.0022 Score=58.06 Aligned_cols=48 Identities=27% Similarity=0.502 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCCCe--EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeec
Q 020071 35 ARLGIIARDGNMPN--LILAGPPGTGKTTSILALAHELLGPNYREAVMELNA 84 (331)
Q Consensus 35 ~~l~~~l~~~~~~~--~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 84 (331)
..|.+.+..|-.+. ++++|+||+|||+++..++..+... +..++.++.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~ 118 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSG 118 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEC
Confidence 45667776665554 6999999999999999999876433 234445444
No 371
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.28 E-value=0.0013 Score=51.21 Aligned_cols=93 Identities=17% Similarity=0.243 Sum_probs=55.4
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecC------CCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCC-
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNAS------DDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEA- 120 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~- 120 (331)
.+.+.||+|+|||++++.++..+..... -+.++.. ...+..+.+. +.-+. .+ ..++.++++||.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G---~i~~~~~~~i~~~~~lS~G~~~r-v~lar--al---~~~p~illlDEP~ 98 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPDEG---IVTWGSTVKIGYFEQLSGGEKMR-LALAK--LL---LENPNLLLLDEPT 98 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCce---EEEECCeEEEEEEccCCHHHHHH-HHHHH--HH---hcCCCEEEEeCCc
Confidence 3799999999999999999886532211 1111110 0011122111 11111 11 245789999996
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC
Q 020071 121 DSMTAGAQQALRRTMEIYSNSTRFALACNVS 151 (331)
Q Consensus 121 d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~ 151 (331)
..+.......+.+++.+.. ..+++++.+.
T Consensus 99 ~~LD~~~~~~l~~~l~~~~--~til~~th~~ 127 (144)
T cd03221 99 NHLDLESIEALEEALKEYP--GTVILVSHDR 127 (144)
T ss_pred cCCCHHHHHHHHHHHHHcC--CEEEEEECCH
Confidence 5778888888888888752 4566666553
No 372
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.28 E-value=0.0025 Score=52.29 Aligned_cols=22 Identities=45% Similarity=0.813 Sum_probs=21.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|+||+|||++++.+++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999987
No 373
>PF13479 AAA_24: AAA domain
Probab=97.27 E-value=0.00044 Score=57.84 Aligned_cols=62 Identities=21% Similarity=0.417 Sum_probs=37.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecC----------CC---CChHhHHHHHHHHHhcccCCCCCCceEE
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNAS----------DD---RGIDVVRNKIKMFAQKKVTLPPGKHKVV 115 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~----------~~---~~~~~i~~~i~~~~~~~~~~~~~~~~vv 115 (331)
+++||+||+|||+++..+-+-+ ++.+... +. ...+.+.+.+..+... ..++.+|
T Consensus 6 ~lIyG~~G~GKTt~a~~~~k~l--------~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~-----~~~y~ti 72 (213)
T PF13479_consen 6 ILIYGPPGSGKTTLAASLPKPL--------FIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEED-----EADYDTI 72 (213)
T ss_pred EEEECCCCCCHHHHHHhCCCeE--------EEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhc-----cCCCCEE
Confidence 8999999999999999883222 2222211 11 1233444444333332 3568999
Q ss_pred EEeCCCCC
Q 020071 116 VLDEADSM 123 (331)
Q Consensus 116 iide~d~l 123 (331)
|||.++.+
T Consensus 73 VIDsis~~ 80 (213)
T PF13479_consen 73 VIDSISWL 80 (213)
T ss_pred EEECHHHH
Confidence 99987654
No 374
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.25 E-value=0.0017 Score=58.52 Aligned_cols=22 Identities=45% Similarity=0.667 Sum_probs=20.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|.||+|+||||++..++..+
T Consensus 140 i~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 140 FALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999875
No 375
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.24 E-value=0.0023 Score=60.61 Aligned_cols=41 Identities=20% Similarity=0.157 Sum_probs=33.0
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 110 GKHKVVVLDEA-DSMTAGAQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 110 ~~~~vviide~-d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
.+++++|+||+ ..+.++....|.+.+++--+++.+|-++..
T Consensus 532 ~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr 573 (604)
T COG4178 532 HKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR 573 (604)
T ss_pred cCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccc
Confidence 46899999998 567888999999999986556777777654
No 376
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.24 E-value=0.015 Score=45.23 Aligned_cols=30 Identities=30% Similarity=0.534 Sum_probs=25.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEee
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELN 83 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 83 (331)
+.+.|++|+|||++++.+++.+ +.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~-----~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL-----GLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh-----CCceeccc
Confidence 5899999999999999999988 55555444
No 377
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.23 E-value=0.0011 Score=56.49 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=23.0
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCC
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGP 73 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~ 73 (331)
.++|.||+|+|||++++.+++.+...
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhccccc
Confidence 38999999999999999999987544
No 378
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.23 E-value=0.0021 Score=50.55 Aligned_cols=29 Identities=38% Similarity=0.460 Sum_probs=24.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEe
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMEL 82 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 82 (331)
++++|++|+|||++++.+++.+ +..++..
T Consensus 2 i~l~G~~GsGKstla~~la~~l-----~~~~~~~ 30 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL-----GLPFVDL 30 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh-----CCCEEEc
Confidence 7899999999999999999988 5555543
No 379
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.22 E-value=0.0054 Score=54.30 Aligned_cols=132 Identities=18% Similarity=0.235 Sum_probs=71.9
Q ss_pred CCcccc-CHHHHHHHHHHHHc---C-CCCe--EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHH
Q 020071 24 VCDIVG-NLDAVARLGIIARD---G-NMPN--LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNK 96 (331)
Q Consensus 24 ~~~~ig-~~~~~~~l~~~l~~---~-~~~~--~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 96 (331)
++++.+ .+.....+.+++.. + ...+ ++++|+.|+|||++...+.+.+ + ........+. ..+...+
T Consensus 47 L~~~~~~d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l~-G----~~~~~~~~~~--~~~~~~~- 118 (304)
T TIGR01613 47 LLETFGGDNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLSNLL-G----DYATTAVASL--KMNEFQE- 118 (304)
T ss_pred HHHHhCCCHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHHHHh-C----hhhccCCcch--hhhhccC-
Confidence 344444 44455556555432 2 2222 6999999999999999887665 2 2111111110 0000000
Q ss_pred HHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHH--------------HhcCCcEEEEeeCCCCCC---Chhhh
Q 020071 97 IKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTME--------------IYSNSTRFALACNVSSKI---IEPIQ 159 (331)
Q Consensus 97 i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le--------------~~~~~~~~I~~~~~~~~l---~~~l~ 159 (331)
..+.... -.++++++.+|++.-.....+.|..+.. +....+.+|+++|....+ ...+.
T Consensus 119 -~~f~~a~----l~gk~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~~~~~a~~ 193 (304)
T TIGR01613 119 -HRFGLAR----LEGKRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIRGFDGGIK 193 (304)
T ss_pred -CCchhhh----hcCCEEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccCCCChhhe
Confidence 0000111 2458899999987433223344444432 112456789999986555 36788
Q ss_pred cccceeeec
Q 020071 160 SRCAIVRFS 168 (331)
Q Consensus 160 sr~~~i~~~ 168 (331)
+|..++.|.
T Consensus 194 RR~~vi~f~ 202 (304)
T TIGR01613 194 RRLRIIPFT 202 (304)
T ss_pred eeEEEEecc
Confidence 899888875
No 380
>PRK14531 adenylate kinase; Provisional
Probab=97.21 E-value=0.0035 Score=51.02 Aligned_cols=23 Identities=39% Similarity=0.689 Sum_probs=21.7
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.++++||||+||||+++.+++.+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999988
No 381
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.21 E-value=0.004 Score=52.12 Aligned_cols=22 Identities=50% Similarity=0.800 Sum_probs=21.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++++|+||+|||++++.+++.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999999988
No 382
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.20 E-value=0.0035 Score=55.58 Aligned_cols=25 Identities=40% Similarity=0.604 Sum_probs=22.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGP 73 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~ 73 (331)
++|.||+|+||||++..++..+...
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhc
Confidence 6999999999999999999988644
No 383
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.20 E-value=0.0032 Score=58.68 Aligned_cols=48 Identities=27% Similarity=0.517 Sum_probs=33.9
Q ss_pred HHHHHHHHcCCCCe--EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeec
Q 020071 35 ARLGIIARDGNMPN--LILAGPPGTGKTTSILALAHELLGPNYREAVMELNA 84 (331)
Q Consensus 35 ~~l~~~l~~~~~~~--~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 84 (331)
..|.+.+..|-.+. ++++|+||+|||+++..++...... +..++.++.
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~ 116 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSG 116 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEc
Confidence 35666666664444 6999999999999999999877432 234455544
No 384
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.19 E-value=0.014 Score=45.85 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=41.6
Q ss_pred eCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCC---hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHH
Q 020071 52 AGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRG---IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQ 128 (331)
Q Consensus 52 ~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~---~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~ 128 (331)
.+..||||||++.+|.+.+.. +-.+...+..+ ..-+...++... .....+||.|--..... ..
T Consensus 5 IAtiGCGKTTva~aL~~LFg~------wgHvQnDnI~~k~~~~f~~~~l~~L~-------~~~~~vViaDRNNh~~r-eR 70 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE------WGHVQNDNITGKRKPKFIKAVLELLA-------KDTHPVVIADRNNHQKR-ER 70 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC------CCccccCCCCCCCHHHHHHHHHHHHh-------hCCCCEEEEeCCCchHH-HH
Confidence 478999999999999998721 22233333222 122222333321 24578999996655433 34
Q ss_pred HHHHHHHHH
Q 020071 129 QALRRTMEI 137 (331)
Q Consensus 129 ~~Ll~~le~ 137 (331)
..|...++.
T Consensus 71 ~ql~~~~~~ 79 (168)
T PF08303_consen 71 KQLFEDVSQ 79 (168)
T ss_pred HHHHHHHHH
Confidence 566666654
No 385
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.17 E-value=0.0048 Score=49.60 Aligned_cols=44 Identities=11% Similarity=0.242 Sum_probs=33.1
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCC
Q 020071 110 GKHKVVVLDEA-DSMTAGAQQALRRTMEIYSNSTRFALACNVSSK 153 (331)
Q Consensus 110 ~~~~vviide~-d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~ 153 (331)
.++.++++||. ..+.......+.+++.+......+|+++.+...
T Consensus 113 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 157 (171)
T cd03228 113 RDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLST 157 (171)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 45789999996 577888888888888876555667777766543
No 386
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.16 E-value=0.0062 Score=51.32 Aligned_cols=63 Identities=21% Similarity=0.155 Sum_probs=38.7
Q ss_pred HHHHHHHcCCCCe--EEEeCCCCccHHHHHHHHHHHhcCCC----CCCceEEeecCCCCChHhHHHHHH
Q 020071 36 RLGIIARDGNMPN--LILAGPPGTGKTTSILALAHELLGPN----YREAVMELNASDDRGIDVVRNKIK 98 (331)
Q Consensus 36 ~l~~~l~~~~~~~--~ll~G~~G~GKt~la~~l~~~l~~~~----~~~~~~~~~~~~~~~~~~i~~~i~ 98 (331)
.|.+.+..|-.+. +.|+||+|+|||+++..++.....++ ....++.++.......+.+.+...
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~ 75 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAV 75 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHH
Confidence 3444555443333 59999999999999999988753321 124556666655433444444433
No 387
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.16 E-value=0.0014 Score=59.66 Aligned_cols=100 Identities=20% Similarity=0.295 Sum_probs=51.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc-CCCCCCceEEeecCCCCChHhHHHH-------------HHHHHhcccCCCCCCceE
Q 020071 49 LILAGPPGTGKTTSILALAHELL-GPNYREAVMELNASDDRGIDVVRNK-------------IKMFAQKKVTLPPGKHKV 114 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~i~~~-------------i~~~~~~~~~~~~~~~~v 114 (331)
++|.||+|+||||++..++..+. ..+....++..+.......+++... +....... ...+..+
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l---~~~~~D~ 302 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETL---ARDGSEL 302 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHH---HhCCCCE
Confidence 68999999999999999997652 2222222222221111001111100 00000000 0235678
Q ss_pred EEEeCCCCCC--HHHHHHHHHHHHHh----cCCcEEEEeeCCC
Q 020071 115 VVLDEADSMT--AGAQQALRRTMEIY----SNSTRFALACNVS 151 (331)
Q Consensus 115 viide~d~l~--~~~~~~Ll~~le~~----~~~~~~I~~~~~~ 151 (331)
|+||=+.+.. ....+.|.++++.. +..+.+++.++..
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~ 345 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS 345 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC
Confidence 9999776653 45566777766531 3345666665543
No 388
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.16 E-value=0.0036 Score=50.55 Aligned_cols=97 Identities=16% Similarity=0.157 Sum_probs=54.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCce----EEeecCCC-CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCC-C
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAV----MELNASDD-RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEAD-S 122 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~----~~~~~~~~-~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d-~ 122 (331)
+.+.||.|+||||+.+.++..+........+ +.+-.... .+..+ +..+.-+.. + ..++.++++||.. .
T Consensus 28 ~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq-~qrv~lara--l---~~~p~lllLDEPts~ 101 (177)
T cd03222 28 IGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGE-LQRVAIAAA--L---LRNATFYLFDEPSAY 101 (177)
T ss_pred EEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHH-HHHHHHHHH--H---hcCCCEEEEECCccc
Confidence 7999999999999999998865322111000 11111110 11111 112111111 1 2357899999964 6
Q ss_pred CCHHHHHHHHHHHHHhcC--CcEEEEeeCCC
Q 020071 123 MTAGAQQALRRTMEIYSN--STRFALACNVS 151 (331)
Q Consensus 123 l~~~~~~~Ll~~le~~~~--~~~~I~~~~~~ 151 (331)
+.....+.+.+.+.+... ...+|+++.+.
T Consensus 102 LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 132 (177)
T cd03222 102 LDIEQRLNAARAIRRLSEEGKKTALVVEHDL 132 (177)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 777788888888775432 24566666653
No 389
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.16 E-value=0.0033 Score=53.33 Aligned_cols=62 Identities=16% Similarity=0.110 Sum_probs=38.2
Q ss_pred HHHHHHcCCCCe--EEEeCCCCccHHHHHHHHHHHhcCCC----CCCceEEeecCCCCChHhHHHHHH
Q 020071 37 LGIIARDGNMPN--LILAGPPGTGKTTSILALAHELLGPN----YREAVMELNASDDRGIDVVRNKIK 98 (331)
Q Consensus 37 l~~~l~~~~~~~--~ll~G~~G~GKt~la~~l~~~l~~~~----~~~~~~~~~~~~~~~~~~i~~~i~ 98 (331)
|...+..|-.+. +.|+||+|+|||+++..++....... ....++.++.......+.+.+..+
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~ 75 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAE 75 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHH
Confidence 344444443333 59999999999999999986543221 124567777665434444444443
No 390
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.15 E-value=0.0031 Score=54.84 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=21.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+++.||+|+|||+++..+++.+.
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~ 24 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLN 24 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 58999999999999999999883
No 391
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.15 E-value=0.0038 Score=50.25 Aligned_cols=25 Identities=40% Similarity=0.485 Sum_probs=22.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGP 73 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~ 73 (331)
++++|++|+|||+++..++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5899999999999999999887544
No 392
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.15 E-value=0.011 Score=48.09 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=22.4
Q ss_pred CCeEEEeCCCCccHHHHHHHHHHHh
Q 020071 46 MPNLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 46 ~~~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+-+++.|++|+||||+++.+++.+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457999999999999999999987
No 393
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.15 E-value=0.0027 Score=55.17 Aligned_cols=105 Identities=20% Similarity=0.290 Sum_probs=59.1
Q ss_pred CCCCCccccCHHHHHHHHHHHHcC--CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC-----------
Q 020071 21 PTKVCDIVGNLDAVARLGIIARDG--NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD----------- 87 (331)
Q Consensus 21 p~~~~~~ig~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~----------- 87 (331)
+.+++++.-.......+.+.+... ...+++|.|++|+||||+..++...+.... ..++.+.....
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~--~~iv~iEd~~E~~l~~~~~~~~ 177 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPED--ERIVTIEDPPELRLPGPNQIQI 177 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTT--SEEEEEESSS-S--SCSSEEEE
T ss_pred cccHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccc--cceEEeccccceeecccceEEE
Confidence 446777776655555555555443 112589999999999999999999886541 22222211100
Q ss_pred ---CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHH
Q 020071 88 ---RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEI 137 (331)
Q Consensus 88 ---~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~ 137 (331)
.......+.+..+. ..++.+++|.|+-.- ++... ++.+..
T Consensus 178 ~~~~~~~~~~~~l~~~L-------R~~pD~iiigEiR~~--e~~~~-~~a~~t 220 (270)
T PF00437_consen 178 QTRRDEISYEDLLKSAL-------RQDPDVIIIGEIRDP--EAAEA-IQAANT 220 (270)
T ss_dssp EEETTTBSHHHHHHHHT-------TS--SEEEESCE-SC--HHHHH-HHHHHT
T ss_pred EeecCcccHHHHHHHHh-------cCCCCcccccccCCH--hHHHH-HHhhcc
Confidence 11223444554443 334679999998754 44444 666653
No 394
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.14 E-value=0.0035 Score=49.29 Aligned_cols=20 Identities=45% Similarity=0.780 Sum_probs=19.0
Q ss_pred EeCCCCccHHHHHHHHHHHh
Q 020071 51 LAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 51 l~G~~G~GKt~la~~l~~~l 70 (331)
+.||||+||+++++.+++.+
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 57999999999999999988
No 395
>PRK13947 shikimate kinase; Provisional
Probab=97.14 E-value=0.00059 Score=54.87 Aligned_cols=32 Identities=34% Similarity=0.405 Sum_probs=27.1
Q ss_pred CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEee
Q 020071 47 PNLILAGPPGTGKTTSILALAHELLGPNYREAVMELN 83 (331)
Q Consensus 47 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 83 (331)
.++++.|++|+|||++++.+++.+ +.+++..+
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~l-----g~~~id~d 33 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTL-----SFGFIDTD 33 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh-----CCCEEECc
Confidence 368999999999999999999998 66666543
No 396
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.12 E-value=0.0031 Score=53.62 Aligned_cols=48 Identities=23% Similarity=0.256 Sum_probs=32.7
Q ss_pred HHHHHHHcCCCCe--EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecC
Q 020071 36 RLGIIARDGNMPN--LILAGPPGTGKTTSILALAHELLGPNYREAVMELNAS 85 (331)
Q Consensus 36 ~l~~~l~~~~~~~--~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 85 (331)
.|.+.+..|-.+. ++++||||+|||+++..++...... +..++.+...
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~e 58 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALE 58 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEee
Confidence 4555566664444 7999999999999999887764332 4455555543
No 397
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.12 E-value=0.022 Score=53.55 Aligned_cols=117 Identities=13% Similarity=0.234 Sum_probs=83.3
Q ss_pred CceEEEEeCCCCCC--HHHHHHHHHHHHHh--cCCcEEEEeeCCCCCCChhhhcccceeeecCCCHHHHHHHHHHHHHhc
Q 020071 111 KHKVVVLDEADSMT--AGAQQALRRTMEIY--SNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186 (331)
Q Consensus 111 ~~~vviide~d~l~--~~~~~~Ll~~le~~--~~~~~~I~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~ 186 (331)
...++|+.|+|.+- +.....|.++.... .+.+ +|+++ ..-.+++.|.+-+.++.++-|+.+|+..++...+...
T Consensus 81 ~~~~~vl~d~h~~~~~~~~~r~l~~l~~~~~~~~~~-~i~~~-~~~~~p~el~~~~~~~~~~lP~~~ei~~~l~~~~~~~ 158 (489)
T CHL00195 81 TPALFLLKDFNRFLNDISISRKLRNLSRILKTQPKT-IIIIA-SELNIPKELKDLITVLEFPLPTESEIKKELTRLIKSL 158 (489)
T ss_pred CCcEEEEecchhhhcchHHHHHHHHHHHHHHhCCCE-EEEEc-CCCCCCHHHHhceeEEeecCcCHHHHHHHHHHHHHhc
Confidence 35699999999883 33344444443322 2233 44444 3467888898888899999999999999998888777
Q ss_pred CCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHhhCCCccchhhhh
Q 020071 187 KVPYVPEGLEAIIFTADG-DMRQALNNLQATYSGFRFVNQENVF 229 (331)
Q Consensus 187 ~~~i~~~~~~~l~~~~~g-~~r~~~~~l~~~~~~~~~i~~~~v~ 229 (331)
+..++++.++.+++.+.| +...+.+.+.......+.++.+++.
T Consensus 159 ~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~~~~~~~~~~ 202 (489)
T CHL00195 159 NIKIDSELLENLTRACQGLSLERIRRVLSKIIATYKTIDENSIP 202 (489)
T ss_pred CCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCCChhhHH
Confidence 888999999999998766 5666777766554445556666543
No 398
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.11 E-value=0.0035 Score=55.39 Aligned_cols=38 Identities=26% Similarity=0.292 Sum_probs=27.5
Q ss_pred HHHHHHH-cCCCCe--EEEeCCCCccHHHHHHHHHHHhcCC
Q 020071 36 RLGIIAR-DGNMPN--LILAGPPGTGKTTSILALAHELLGP 73 (331)
Q Consensus 36 ~l~~~l~-~~~~~~--~ll~G~~G~GKt~la~~l~~~l~~~ 73 (331)
.|..++. .|-++. +.++||+|+|||+++..++......
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~ 82 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKA 82 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4555665 443333 5999999999999999888776443
No 399
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.11 E-value=0.0033 Score=55.35 Aligned_cols=23 Identities=35% Similarity=0.671 Sum_probs=21.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+++.||+|+|||++|..+++.+.
T Consensus 7 i~i~GptgsGKt~la~~la~~~~ 29 (307)
T PRK00091 7 IVIVGPTASGKTALAIELAKRLN 29 (307)
T ss_pred EEEECCCCcCHHHHHHHHHHhCC
Confidence 79999999999999999999884
No 400
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.11 E-value=0.0007 Score=54.46 Aligned_cols=29 Identities=34% Similarity=0.430 Sum_probs=25.2
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEE
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVME 81 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 81 (331)
.++|+|++|+|||++++.+++.+ +.+++.
T Consensus 6 ~i~l~G~~GsGKstla~~La~~l-----~~~~~d 34 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAKRL-----GYDFID 34 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh-----CCCEEE
Confidence 48999999999999999999998 555554
No 401
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.10 E-value=0.0096 Score=47.95 Aligned_cols=43 Identities=16% Similarity=0.346 Sum_probs=31.6
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CcEEEEeeCCCC
Q 020071 110 GKHKVVVLDEA-DSMTAGAQQALRRTMEIYSN-STRFALACNVSS 152 (331)
Q Consensus 110 ~~~~vviide~-d~l~~~~~~~Ll~~le~~~~-~~~~I~~~~~~~ 152 (331)
.+++++++||. ..+.......+.+.+.+... +..+|+++.+..
T Consensus 113 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 113 GNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred cCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 46789999996 57788888888888876533 456777776653
No 402
>PRK02496 adk adenylate kinase; Provisional
Probab=97.10 E-value=0.0045 Score=50.42 Aligned_cols=23 Identities=52% Similarity=0.895 Sum_probs=21.5
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+++.||||+|||++++.+++.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37999999999999999999988
No 403
>PRK05973 replicative DNA helicase; Provisional
Probab=97.10 E-value=0.0038 Score=52.71 Aligned_cols=34 Identities=29% Similarity=0.350 Sum_probs=25.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeec
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNA 84 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 84 (331)
+++.|+||+|||+++..++...... +.+++.++.
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSl 100 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTL 100 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEE
Confidence 6999999999999999998876433 334444443
No 404
>PRK13808 adenylate kinase; Provisional
Probab=97.09 E-value=0.0077 Score=53.36 Aligned_cols=23 Identities=48% Similarity=0.804 Sum_probs=21.5
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.++|.||||+|||+++..+++.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~y 24 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQY 24 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37999999999999999999988
No 405
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.08 E-value=0.0088 Score=49.84 Aligned_cols=22 Identities=45% Similarity=0.825 Sum_probs=20.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.||||+||||+++.+++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999987
No 406
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.07 E-value=0.0094 Score=48.76 Aligned_cols=110 Identities=18% Similarity=0.245 Sum_probs=59.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCce--------------------------------EEeecCCC-CChHhHHH
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAV--------------------------------MELNASDD-RGIDVVRN 95 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~--------------------------------~~~~~~~~-~~~~~i~~ 95 (331)
+++.|+.|+|||.+.+.++.-+..++....+ +.++.... .+...-+.
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~~~~~~~ 110 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWGRRSARK 110 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccccChHHHHH
Confidence 6999999999999999999887654432221 22211111 12223333
Q ss_pred HHHHHHhcccCCCCCCceEEEEeCCCCCCHHH-HHHHHHHH---HHhcCCcEEEEeeCCCCCCChhhhcc
Q 020071 96 KIKMFAQKKVTLPPGKHKVVVLDEADSMTAGA-QQALRRTM---EIYSNSTRFALACNVSSKIIEPIQSR 161 (331)
Q Consensus 96 ~i~~~~~~~~~~~~~~~~vviide~d~l~~~~-~~~Ll~~l---e~~~~~~~~I~~~~~~~~l~~~l~sr 161 (331)
.++......- .-+..|+|||-+..+...+ .++.+++| ....+...+|++|-++..+.+....|
T Consensus 111 ~L~~l~~~~k---~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp~~l~e~~~~r 177 (235)
T COG2874 111 LLDLLLEFIK---RWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHPSALDEDVLTR 177 (235)
T ss_pred HHHHHHhhHH---hhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeChhhcCHHHHHH
Confidence 3333333321 3456799999776553222 33344444 34444555666666666655444443
No 407
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.07 E-value=0.0048 Score=62.88 Aligned_cols=95 Identities=19% Similarity=0.197 Sum_probs=58.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC--------CCh--HhHHHHHHHHHhcccCCCCCCceEEEEe
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD--------RGI--DVVRNKIKMFAQKKVTLPPGKHKVVVLD 118 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~--------~~~--~~i~~~i~~~~~~~~~~~~~~~~vviid 118 (331)
.++.|++|+|||++.+.+.+.+... +..++-+.++.. .++ ..+...+..+.... .+.....++|||
T Consensus 400 ~~v~G~AGTGKTt~l~~~~~~~e~~--G~~V~g~ApTgkAA~~L~e~~Gi~a~TIas~ll~~~~~~--~~l~~~~vlVID 475 (1102)
T PRK13826 400 AAVVGRAGAGKTTMMKAAREAWEAA--GYRVVGGALAGKAAEGLEKEAGIQSRTLSSWELRWNQGR--DQLDNKTVFVLD 475 (1102)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEcCcHHHHHHHHHhhCCCeeeHHHHHhhhccCc--cCCCCCcEEEEE
Confidence 6999999999999999998876433 233333322110 011 11222111111111 112346799999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEeeC
Q 020071 119 EADSMTAGAQQALRRTMEIYSNSTRFALACN 149 (331)
Q Consensus 119 e~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~ 149 (331)
|+..++......|++..+. .++++|++..
T Consensus 476 EAsMv~~~~m~~Ll~~~~~--~garvVLVGD 504 (1102)
T PRK13826 476 EAGMVASRQMALFVEAVTR--AGAKLVLVGD 504 (1102)
T ss_pred CcccCCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 9999999888888888864 4577777764
No 408
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.07 E-value=0.012 Score=52.16 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=35.4
Q ss_pred CCCCCccc--c--CHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHh
Q 020071 21 PTKVCDIV--G--NLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 21 p~~~~~~i--g--~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.++++++ | .+.....|...+..+. +++++|++|+|||+++++++..+
T Consensus 121 ~~tl~~l~~~g~~~~~~~~~L~~~v~~~~--~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 121 IFTLDQYVERGIMTAAQREAIIAAVRAHR--NILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCCHHHHHhcCCCCHHHHHHHHHHHHcCC--eEEEECCCCCCHHHHHHHHHHhh
Confidence 34555664 2 2455566777776553 69999999999999999999875
No 409
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.06 E-value=0.012 Score=55.33 Aligned_cols=23 Identities=48% Similarity=0.798 Sum_probs=20.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+.|+||.|+|||+++..++..+.
T Consensus 353 IaLVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 353 IALVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 79999999999999999988764
No 410
>PRK03839 putative kinase; Provisional
Probab=97.06 E-value=0.00065 Score=55.17 Aligned_cols=29 Identities=38% Similarity=0.581 Sum_probs=25.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEe
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMEL 82 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 82 (331)
++|.|+||+||||+++.+++.+ +.+++.+
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~-----~~~~id~ 31 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKL-----GYEYVDL 31 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHh-----CCcEEeh
Confidence 7999999999999999999998 5555543
No 411
>PRK04328 hypothetical protein; Provisional
Probab=97.06 E-value=0.0036 Score=53.67 Aligned_cols=48 Identities=23% Similarity=0.233 Sum_probs=31.8
Q ss_pred HHHHHHHcCCCCe--EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecC
Q 020071 36 RLGIIARDGNMPN--LILAGPPGTGKTTSILALAHELLGPNYREAVMELNAS 85 (331)
Q Consensus 36 ~l~~~l~~~~~~~--~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 85 (331)
.|.+.+..|-++. ++++|+||+|||+++..++...... +...+.++..
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~e 60 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALE 60 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEee
Confidence 3455555554333 6999999999999999988764333 3344555543
No 412
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.05 E-value=0.0058 Score=54.08 Aligned_cols=51 Identities=20% Similarity=0.058 Sum_probs=31.3
Q ss_pred HHHHHHHcCCCCe--EEEeCCCCccHHHHHHHHHHHhcCC----CCCCceEEeecCC
Q 020071 36 RLGIIARDGNMPN--LILAGPPGTGKTTSILALAHELLGP----NYREAVMELNASD 86 (331)
Q Consensus 36 ~l~~~l~~~~~~~--~ll~G~~G~GKt~la~~l~~~l~~~----~~~~~~~~~~~~~ 86 (331)
.|.+.+.+|-.+. ..++||+|+|||+++..++-....+ +.+..+++++...
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 3455555443333 5999999999999998887543211 1123455555544
No 413
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.05 E-value=0.0048 Score=55.45 Aligned_cols=26 Identities=42% Similarity=0.689 Sum_probs=22.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPN 74 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~ 74 (331)
++|.||.|+||||++..++..+...+
T Consensus 209 i~lvGptGvGKTTt~akLA~~l~~~g 234 (407)
T PRK12726 209 ISLIGQTGVGKTTTLVKLGWQLLKQN 234 (407)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 69999999999999999998775443
No 414
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.05 E-value=0.011 Score=47.94 Aligned_cols=44 Identities=11% Similarity=0.075 Sum_probs=33.2
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCC
Q 020071 110 GKHKVVVLDEA-DSMTAGAQQALRRTMEIYSNSTRFALACNVSSK 153 (331)
Q Consensus 110 ~~~~vviide~-d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~ 153 (331)
.+++++++||. ..+.......+.+.+.+......+|+++.+...
T Consensus 115 ~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 159 (178)
T cd03247 115 QDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTG 159 (178)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 46789999996 577888888888888766445667777776543
No 415
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.04 E-value=0.0059 Score=49.55 Aligned_cols=102 Identities=19% Similarity=0.242 Sum_probs=58.0
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC--ChHhHHHH-------HHH-----HH-hcccCCC----
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR--GIDVVRNK-------IKM-----FA-QKKVTLP---- 108 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~--~~~~i~~~-------i~~-----~~-~~~~~~~---- 108 (331)
.+.|.||+|+|||++.+.++..+.... --+.++..+.. ....+... ++. .. .....++
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~~~~~---G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~ 103 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLLKPSS---GEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGER 103 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHH
Confidence 379999999999999999988653211 11223321110 01111110 000 00 0000000
Q ss_pred ---------CCCceEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CcEEEEeeCCCC
Q 020071 109 ---------PGKHKVVVLDEA-DSMTAGAQQALRRTMEIYSN--STRFALACNVSS 152 (331)
Q Consensus 109 ---------~~~~~vviide~-d~l~~~~~~~Ll~~le~~~~--~~~~I~~~~~~~ 152 (331)
..++.++++||. ..+.......+.+.+.+... +..+|+++.+..
T Consensus 104 qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 104 QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 246899999996 47788888888888876543 456677776544
No 416
>PRK00625 shikimate kinase; Provisional
Probab=97.04 E-value=0.00077 Score=54.24 Aligned_cols=31 Identities=32% Similarity=0.392 Sum_probs=26.7
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEee
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVMELN 83 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 83 (331)
+++|.|.+|+|||++++.+++.+ +.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l-----~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL-----SLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCCEEEhh
Confidence 48999999999999999999998 66666554
No 417
>PRK14527 adenylate kinase; Provisional
Probab=97.04 E-value=0.0087 Score=49.05 Aligned_cols=23 Identities=52% Similarity=0.777 Sum_probs=21.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+++.||||+||||+++.+++.+.
T Consensus 9 i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 9 VIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 79999999999999999998873
No 418
>PRK09354 recA recombinase A; Provisional
Probab=97.03 E-value=0.008 Score=53.62 Aligned_cols=37 Identities=32% Similarity=0.413 Sum_probs=27.1
Q ss_pred HHHHHHHcCCCCe---EEEeCCCCccHHHHHHHHHHHhcC
Q 020071 36 RLGIIARDGNMPN---LILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 36 ~l~~~l~~~~~~~---~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
.|..++.-|.+|. +.++||+|+|||+++..++.....
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~ 86 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK 86 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4555666244443 599999999999999998876543
No 419
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=97.01 E-value=0.0013 Score=55.63 Aligned_cols=21 Identities=38% Similarity=0.741 Sum_probs=19.3
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 020071 49 LILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~ 69 (331)
+++.|+||+|||++++.+...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 378999999999999999987
No 420
>PLN02674 adenylate kinase
Probab=97.01 E-value=0.022 Score=48.41 Aligned_cols=24 Identities=46% Similarity=0.746 Sum_probs=22.3
Q ss_pred CeEEEeCCCCccHHHHHHHHHHHh
Q 020071 47 PNLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 47 ~~~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.++|.||||+||+|.++.+++.+
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999999987
No 421
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.01 E-value=0.018 Score=47.69 Aligned_cols=28 Identities=36% Similarity=0.519 Sum_probs=23.6
Q ss_pred CCCCeEEEeCCCCccHHHHHHHHHHHhc
Q 020071 44 GNMPNLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 44 ~~~~~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
....+.|+.||||+||||+.+-+++.+.
T Consensus 135 ~g~lntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 135 NGWLNTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred cCceeeEEecCCCCChHHHHHHHHHHhh
Confidence 3334589999999999999999999874
No 422
>PRK07261 topology modulation protein; Provisional
Probab=97.01 E-value=0.00082 Score=54.10 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+||||+|+.+++.+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999887
No 423
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.00 E-value=0.014 Score=46.81 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=24.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNAS 85 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 85 (331)
+++.|++|+|||++|..++... +.+.+.+...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~ 33 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL-----GGPVTYIATA 33 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEcc
Confidence 5899999999999999998863 3344555443
No 424
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.00 E-value=0.0023 Score=51.02 Aligned_cols=22 Identities=50% Similarity=0.756 Sum_probs=20.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.||+|+||||+++.+++.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999987
No 425
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.00 E-value=0.014 Score=47.64 Aligned_cols=22 Identities=41% Similarity=0.546 Sum_probs=20.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|+||+|+|||++++.+.+..
T Consensus 7 ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 7 FIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7999999999999999998875
No 426
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.99 E-value=0.011 Score=47.17 Aligned_cols=99 Identities=23% Similarity=0.262 Sum_probs=56.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCC------CceEEeecCCCCChHhHHHHHHH--------------HHhcccCCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYR------EAVMELNASDDRGIDVVRNKIKM--------------FAQKKVTLP 108 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~------~~~~~~~~~~~~~~~~i~~~i~~--------------~~~~~~~~~ 108 (331)
+.+.||.|+|||++++.++..+...... ..+..+..........+.+.+.. .....+
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral--- 106 (166)
T cd03223 30 LLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLL--- 106 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHH---
Confidence 7999999999999999999875422110 00111111100000112222110 000001
Q ss_pred CCCceEEEEeCC-CCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCC
Q 020071 109 PGKHKVVVLDEA-DSMTAGAQQALRRTMEIYSNSTRFALACNVSS 152 (331)
Q Consensus 109 ~~~~~vviide~-d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~ 152 (331)
..+++++++||. ..+.......+.+.+.+. ...+|+++.+..
T Consensus 107 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~ 149 (166)
T cd03223 107 LHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPS 149 (166)
T ss_pred HcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChh
Confidence 246789999996 467788888898988876 245667776653
No 427
>PRK06547 hypothetical protein; Provisional
Probab=96.99 E-value=0.0017 Score=52.20 Aligned_cols=30 Identities=37% Similarity=0.465 Sum_probs=24.0
Q ss_pred HHcCCCCeEEEeCCCCccHHHHHHHHHHHh
Q 020071 41 ARDGNMPNLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 41 l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 70 (331)
+..+....+.+.|++|+|||++++.+++.+
T Consensus 10 ~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 10 LCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred hhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 343443337999999999999999999987
No 428
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.98 E-value=0.011 Score=48.74 Aligned_cols=23 Identities=30% Similarity=0.699 Sum_probs=21.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+++.||+|+||||++..+...+.
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 79999999999999999988875
No 429
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.98 E-value=0.0039 Score=54.07 Aligned_cols=26 Identities=38% Similarity=0.599 Sum_probs=22.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPN 74 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~ 74 (331)
+.|+||+|+||||++..++..+...+
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~~g 100 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKKQG 100 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 68889999999999999998886543
No 430
>PF13245 AAA_19: Part of AAA domain
Probab=96.97 E-value=0.0014 Score=44.90 Aligned_cols=23 Identities=57% Similarity=0.951 Sum_probs=17.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+++.||||+|||+++...+..+.
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 57799999999966666655553
No 431
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.0058 Score=48.40 Aligned_cols=46 Identities=26% Similarity=0.371 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC
Q 020071 30 NLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY 75 (331)
Q Consensus 30 ~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~ 75 (331)
|+..+....+....+..+- +.|+|.+|+||||+|.++.+.+...+.
T Consensus 6 ~~~~v~~~~r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~ 52 (197)
T COG0529 6 HPHSVTKQEREALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGY 52 (197)
T ss_pred cccccCHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCC
Confidence 3333333333444444444 799999999999999999999976643
No 432
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.95 E-value=0.0026 Score=57.25 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=23.0
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCC
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGP 73 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~ 73 (331)
..++.||+|+|||++++.+++.....
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 37999999999999999999988654
No 433
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.95 E-value=0.0059 Score=56.05 Aligned_cols=28 Identities=32% Similarity=0.423 Sum_probs=23.7
Q ss_pred Ce-EEEeCCCCccHHHHHHHHHHHhcCCC
Q 020071 47 PN-LILAGPPGTGKTTSILALAHELLGPN 74 (331)
Q Consensus 47 ~~-~ll~G~~G~GKt~la~~l~~~l~~~~ 74 (331)
|. ++|+|++|+||||++..++..+...+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G 128 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKG 128 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 45 69999999999999999998876543
No 434
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.95 E-value=0.00047 Score=56.69 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=32.9
Q ss_pred CceEEEEeCCCCCCHH-H-----HHHHHHHHHHh-cCCcEEEEeeCCCCCCChhhhcccce
Q 020071 111 KHKVVVLDEADSMTAG-A-----QQALRRTMEIY-SNSTRFALACNVSSKIIEPIQSRCAI 164 (331)
Q Consensus 111 ~~~vviide~d~l~~~-~-----~~~Ll~~le~~-~~~~~~I~~~~~~~~l~~~l~sr~~~ 164 (331)
...++||||++..-+. . .....+.+... ..+.-+|++|.++..+.+.++..+..
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~lve~ 139 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDLVEY 139 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCCEEE
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHHHhe
Confidence 5789999999866321 1 12333555433 34677999999999999999877543
No 435
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.95 E-value=0.011 Score=52.33 Aligned_cols=37 Identities=32% Similarity=0.403 Sum_probs=26.9
Q ss_pred HHHHHHHcCCCCe---EEEeCCCCccHHHHHHHHHHHhcC
Q 020071 36 RLGIIARDGNMPN---LILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 36 ~l~~~l~~~~~~~---~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
.|..++.-|.+|. +.++||+|+|||+++..++.....
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~ 81 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK 81 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4555565244433 599999999999999998876643
No 436
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.95 E-value=0.0023 Score=56.28 Aligned_cols=49 Identities=29% Similarity=0.295 Sum_probs=36.5
Q ss_pred CCCCCccc--c--CHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhc
Q 020071 21 PTKVCDIV--G--NLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 21 p~~~~~~i--g--~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+.++++++ | .+.....|..++..+. +++++|++|+||||+++++...+.
T Consensus 105 ~~tl~~l~~~g~~~~~~~~~L~~~v~~~~--~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 105 VFTLDDYVEAGIMTAAQRDVLREAVLARK--NILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred CCCHHHHHhcCCCCHHHHHHHHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHhh
Confidence 34555554 2 3455667777777543 699999999999999999998874
No 437
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.94 E-value=0.0038 Score=61.18 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=32.1
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC
Q 020071 110 GKHKVVVLDEA-DSMTAGAQQALRRTMEIYSNSTRFALACNVS 151 (331)
Q Consensus 110 ~~~~vviide~-d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~ 151 (331)
.+++++++||+ ..+..+....+.+.|.+...++.+|+++.+.
T Consensus 626 ~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl 668 (709)
T COG2274 626 SKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRL 668 (709)
T ss_pred cCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 46899999997 4566777778888888777667777777653
No 438
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.94 E-value=0.02 Score=45.60 Aligned_cols=100 Identities=20% Similarity=0.236 Sum_probs=52.6
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCC----------CC--CceEE----eecCCC-CChHhHHHHHHHHHhcccCCCCC
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPN----------YR--EAVME----LNASDD-RGIDVVRNKIKMFAQKKVTLPPG 110 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~----------~~--~~~~~----~~~~~~-~~~~~i~~~i~~~~~~~~~~~~~ 110 (331)
..++.||.|+|||++.+.+.-.+.... .+ .+... +..... .+..+............ .+
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~----~~ 98 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALAS----LK 98 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcC----CC
Confidence 369999999999999999766543221 11 11121 000111 12112222222222111 23
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHHHhc-CCcEEEEeeCCC
Q 020071 111 KHKVVVLDEADS-MTAGAQQALRRTMEIYS-NSTRFALACNVS 151 (331)
Q Consensus 111 ~~~vviide~d~-l~~~~~~~Ll~~le~~~-~~~~~I~~~~~~ 151 (331)
++.++++||+.. ++......+...+.+.. .++.+|+++.+.
T Consensus 99 ~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~ 141 (162)
T cd03227 99 PRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP 141 (162)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 578999999754 45555566665554432 245667776554
No 439
>PRK10867 signal recognition particle protein; Provisional
Probab=96.93 E-value=0.0082 Score=55.38 Aligned_cols=27 Identities=37% Similarity=0.529 Sum_probs=22.8
Q ss_pred Ce-EEEeCCCCccHHHHHHHHHHHhcCC
Q 020071 47 PN-LILAGPPGTGKTTSILALAHELLGP 73 (331)
Q Consensus 47 ~~-~ll~G~~G~GKt~la~~l~~~l~~~ 73 (331)
|. ++|+|++|+||||++..++..+...
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 45 6999999999999999998877544
No 440
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.92 E-value=0.0027 Score=57.37 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=23.0
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCC
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGP 73 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~ 73 (331)
.+++.||+|+|||++++.+++.+..+
T Consensus 170 ~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 170 RGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred EEEEECCCCCChhHHHHHHHHhhccc
Confidence 38999999999999999999987544
No 441
>PRK13948 shikimate kinase; Provisional
Probab=96.92 E-value=0.0064 Score=49.31 Aligned_cols=31 Identities=29% Similarity=0.303 Sum_probs=27.0
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEee
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVMELN 83 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 83 (331)
+++|.|.+|+|||++++.+++.+ +.+++..+
T Consensus 12 ~I~LiG~~GsGKSTvg~~La~~l-----g~~~iD~D 42 (182)
T PRK13948 12 WVALAGFMGTGKSRIGWELSRAL-----MLHFIDTD 42 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-----CCCEEECC
Confidence 38999999999999999999998 66777554
No 442
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.92 E-value=0.0025 Score=52.05 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=20.9
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.++|.||+|+||||+++.++..+
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 37999999999999999998876
No 443
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.91 E-value=0.014 Score=45.67 Aligned_cols=23 Identities=39% Similarity=0.601 Sum_probs=21.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
++++|++|+|||++++.++..+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999885
No 444
>PRK13949 shikimate kinase; Provisional
Probab=96.91 E-value=0.0012 Score=53.04 Aligned_cols=31 Identities=42% Similarity=0.521 Sum_probs=26.1
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEee
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVMELN 83 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 83 (331)
+++|.|++|+|||++++.+++.+ +.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l-----~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL-----GLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-----CCCeeccc
Confidence 48999999999999999999998 55555543
No 445
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.89 E-value=0.012 Score=49.09 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=18.7
Q ss_pred EEEeCCCCccHHHHHHHHHH
Q 020071 49 LILAGPPGTGKTTSILALAH 68 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~ 68 (331)
++|+||.|+|||++.+.++.
T Consensus 32 ~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 32 MVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 79999999999999999984
No 446
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.88 E-value=0.018 Score=48.09 Aligned_cols=99 Identities=16% Similarity=0.201 Sum_probs=58.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCc---------------eEEeecCCCCChHhHHHHHHHHHhcccCCCCCCce
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREA---------------VMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHK 113 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~---------------~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~ 113 (331)
++++|++|+|||+++..+.+....+..... .+.+..-|..+.+.++.....+...+ ..-
T Consensus 8 ivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~------~~~ 81 (219)
T COG1100 8 IVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGA------NGI 81 (219)
T ss_pred EEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCC------CEE
Confidence 799999999999999999998766433221 11122224445556665555444332 345
Q ss_pred EEEEeCCC-CCCHHHHHHHHHHHHHhc-CCcEEEEeeCCCCC
Q 020071 114 VVVLDEAD-SMTAGAQQALRRTMEIYS-NSTRFALACNVSSK 153 (331)
Q Consensus 114 vviide~d-~l~~~~~~~Ll~~le~~~-~~~~~I~~~~~~~~ 153 (331)
+++.|..+ .-..+....+...+.+.. ....+|++.|..+.
T Consensus 82 l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl 123 (219)
T COG1100 82 LIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDL 123 (219)
T ss_pred EEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccccc
Confidence 55555554 223344444554444333 46788888876543
No 447
>PRK14530 adenylate kinase; Provisional
Probab=96.88 E-value=0.0013 Score=55.13 Aligned_cols=24 Identities=46% Similarity=0.800 Sum_probs=22.3
Q ss_pred CeEEEeCCCCccHHHHHHHHHHHh
Q 020071 47 PNLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 47 ~~~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.++|.|+||+||||+++.+++.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999988
No 448
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.87 E-value=0.0088 Score=55.23 Aligned_cols=121 Identities=16% Similarity=0.226 Sum_probs=73.0
Q ss_pred CCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecC--------------C
Q 020071 21 PTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNAS--------------D 86 (331)
Q Consensus 21 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~--------------~ 86 (331)
...|+++-..+.....+.+.+....- -+|++||.|+|||+....+.+.++.+..+ ++.+.-+ .
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~~p~G-liLvTGPTGSGKTTTLY~~L~~ln~~~~n--I~TiEDPVE~~~~gI~Q~qVN~ 310 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLNRPQG-LILVTGPTGSGKTTTLYAALSELNTPERN--IITIEDPVEYQLPGINQVQVNP 310 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHhCCCe-EEEEeCCCCCCHHHHHHHHHHHhcCCCce--EEEeeCCeeeecCCcceeeccc
Confidence 45667777777788888888876441 27999999999999999999999765332 2222111 0
Q ss_pred CCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhh
Q 020071 87 DRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPI 158 (331)
Q Consensus 87 ~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l 158 (331)
..+. .....++.+. ..++.|++|.|+-.. +..+...+.-. +..++|+|=..+....++
T Consensus 311 k~gl-tfa~~LRa~L-------RqDPDvImVGEIRD~--ETAeiavqAal----TGHLVlSTlHtnda~~ai 368 (500)
T COG2804 311 KIGL-TFARALRAIL-------RQDPDVIMVGEIRDL--ETAEIAVQAAL----TGHLVLSTLHTNDAPGAI 368 (500)
T ss_pred ccCC-CHHHHHHHHh-------ccCCCeEEEeccCCH--HHHHHHHHHHh----cCCeEeeecccCchHHHH
Confidence 0111 2223333333 456889999999654 33333333332 345677765555554444
No 449
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.87 E-value=0.00085 Score=50.90 Aligned_cols=22 Identities=45% Similarity=0.655 Sum_probs=20.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|.|++|+||||+++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999986
No 450
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.86 E-value=0.0027 Score=48.47 Aligned_cols=24 Identities=38% Similarity=0.445 Sum_probs=22.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcC
Q 020071 49 LILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
++|.|+.|+|||++++.+++.+..
T Consensus 25 i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 25 VLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCC
Confidence 799999999999999999999843
No 451
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.85 E-value=0.023 Score=52.43 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=22.2
Q ss_pred Ce-EEEeCCCCccHHHHHHHHHHHh
Q 020071 47 PN-LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 47 ~~-~ll~G~~G~GKt~la~~l~~~l 70 (331)
|. ++++|++|+|||+++..++..+
T Consensus 255 p~vil~~G~~G~GKSt~a~~LA~~l 279 (475)
T PRK12337 255 PLHVLIGGVSGVGKSVLASALAYRL 279 (475)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 45 6999999999999999999988
No 452
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.85 E-value=0.011 Score=55.81 Aligned_cols=49 Identities=20% Similarity=0.340 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCCCe--EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecC
Q 020071 35 ARLGIIARDGNMPN--LILAGPPGTGKTTSILALAHELLGPNYREAVMELNAS 85 (331)
Q Consensus 35 ~~l~~~l~~~~~~~--~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 85 (331)
..|.+.+..|-.+. +++.||||+|||+++..++...... +..++.+...
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~e 300 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYE 300 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEee
Confidence 45667777775555 6999999999999999999877543 2344555433
No 453
>PRK14529 adenylate kinase; Provisional
Probab=96.83 E-value=0.012 Score=49.23 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=22.0
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhc
Q 020071 48 NLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+++|.||||+||||.++.+++.+.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 378999999999999999999984
No 454
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.82 E-value=0.021 Score=50.65 Aligned_cols=34 Identities=32% Similarity=0.499 Sum_probs=26.6
Q ss_pred HHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhc
Q 020071 36 RLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 36 ~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
.|...+..+. ++++.||+|+||||+++++...+.
T Consensus 136 ~l~~~v~~~~--~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 136 FLRLAIASRK--NIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred HHHHHhhCCC--EEEEECCCCCCHHHHHHHHHccCC
Confidence 3444455554 699999999999999999998764
No 455
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.031 Score=42.86 Aligned_cols=93 Identities=15% Similarity=0.218 Sum_probs=58.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCC--------CCceE-------EeecCCCCChHhHHHHHHHHHhcccCCCCCCce
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNY--------REAVM-------ELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHK 113 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~--------~~~~~-------~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~ 113 (331)
+++.||.|+||+-+.+.+.+.-..... +..++ .+.--+..+.+.++..-..+.... ..
T Consensus 12 fl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA-------AG 84 (214)
T KOG0086|consen 12 FLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA-------AG 84 (214)
T ss_pred eEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc-------cc
Confidence 799999999999999998876543321 11122 222223345566777666665543 23
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHH----hcCCcEEEEeeCC
Q 020071 114 VVVLDEADSMTAGAQQALRRTMEI----YSNSTRFALACNV 150 (331)
Q Consensus 114 vviide~d~l~~~~~~~Ll~~le~----~~~~~~~I~~~~~ 150 (331)
.+++.++ -+.+..|+|-.++.+ .+++.++|++.|.
T Consensus 85 AlLVYD~--TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnK 123 (214)
T KOG0086|consen 85 ALLVYDI--TSRDSFNALTNWLTDARTLASPNIVVILCGNK 123 (214)
T ss_pred eEEEEec--cchhhHHHHHHHHHHHHhhCCCcEEEEEeCCh
Confidence 4444443 456788999888875 3456777777664
No 456
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.82 E-value=0.0083 Score=50.52 Aligned_cols=46 Identities=28% Similarity=0.292 Sum_probs=30.4
Q ss_pred HHHHHHcCCCCe--EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeec
Q 020071 37 LGIIARDGNMPN--LILAGPPGTGKTTSILALAHELLGPNYREAVMELNA 84 (331)
Q Consensus 37 l~~~l~~~~~~~--~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 84 (331)
|.+.+..|-++. +++.|+||+|||+++..++...... +..++.++.
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~--g~~~~y~s~ 52 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKN--GEKAMYISL 52 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEC
Confidence 445555554333 6999999999999999988765433 334444443
No 457
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=96.82 E-value=0.014 Score=46.16 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||+++..+...-
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~ 24 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMDG 24 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999887643
No 458
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=96.82 E-value=0.013 Score=46.62 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=17.7
Q ss_pred eEEEeCCCCccHHHHHHHHHH
Q 020071 48 NLILAGPPGTGKTTSILALAH 68 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~ 68 (331)
++++.||+|+|||..+...+-
T Consensus 16 ~~li~aptGsGKT~~~~~~~l 36 (169)
T PF00270_consen 16 NVLISAPTGSGKTLAYILPAL 36 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCccHHHHHHHHH
Confidence 599999999999998875443
No 459
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.11 Score=46.89 Aligned_cols=101 Identities=12% Similarity=0.049 Sum_probs=59.3
Q ss_pred ceEEEEeCCCCCCH-----------------HHHHHHHHHHHHhcCCcEEEEeeCCC--C---------------CCChh
Q 020071 112 HKVVVLDEADSMTA-----------------GAQQALRRTMEIYSNSTRFALACNVS--S---------------KIIEP 157 (331)
Q Consensus 112 ~~vviide~d~l~~-----------------~~~~~Ll~~le~~~~~~~~I~~~~~~--~---------------~l~~~ 157 (331)
+-+|.||++..+.. ...+.+.+++..-.....+|++.... . .+.+.
T Consensus 316 kVLvaID~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~~i~ndwt~g~vi~a~s~~~~~~a~~h~gv~~y~pr~llg~e 395 (461)
T KOG3928|consen 316 KVLVAIDNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRDIISNDWTFGSVIMAISGVTTPSAFGHLGVAPYVPRKLLGEE 395 (461)
T ss_pred cEEEEEcCcchheeeeeeeccccCcCCchhhhHHHHHHHHHhcccccceEEEEecccccchhccccccccCCchHhcCcc
Confidence 46888999977632 12456667776544444455554411 0 01111
Q ss_pred h---hcccceeeecCCCHHHHHHHHHHHHHhcC--CCC-CHHHHHHHHHhcCCCHHHHHHH
Q 020071 158 I---QSRCAIVRFSRLSDEEILSRLMVVVQEEK--VPY-VPEGLEAIIFTADGDMRQALNN 212 (331)
Q Consensus 158 l---~sr~~~i~~~~~~~~~~~~~l~~~~~~~~--~~i-~~~~~~~l~~~~~g~~r~~~~~ 212 (331)
. +.-+..++.++++.+|..+++.-..+..= ..+ .++....+.-+++||++.....
T Consensus 396 gfe~lqpf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~l 456 (461)
T KOG3928|consen 396 GFEALQPFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMERL 456 (461)
T ss_pred chhhccCcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHHH
Confidence 1 12255688999999998887765544210 122 3666778888899999654443
No 460
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.81 E-value=0.067 Score=44.15 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.2
Q ss_pred CCeEEEeCCCCccHHHHHHHHHHH
Q 020071 46 MPNLILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 46 ~~~~ll~G~~G~GKt~la~~l~~~ 69 (331)
.+.+++.|++|+|||++.+.+...
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcc
Confidence 355899999999999999999875
No 461
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=96.81 E-value=0.006 Score=53.38 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=20.7
Q ss_pred eEEEeCCCCccHHHHHHHHHHH
Q 020071 48 NLILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~ 69 (331)
-+++.||+|+|||.+|..+++.
T Consensus 6 ii~I~GpTasGKS~LAl~LA~~ 27 (300)
T PRK14729 6 IVFIFGPTAVGKSNILFHFPKG 27 (300)
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 3799999999999999999998
No 462
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.81 E-value=0.0014 Score=55.29 Aligned_cols=37 Identities=27% Similarity=0.495 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHh
Q 020071 32 DAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 32 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.....+...+.+.. -.+++||||||||+++..+...+
T Consensus 5 ~Q~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 5 SQREAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 34444554544432 16999999999998888888776
No 463
>PRK06217 hypothetical protein; Validated
Probab=96.81 E-value=0.0015 Score=53.23 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.8
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.++|.|.+|+||||+++.+++.+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999998
No 464
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.79 E-value=0.0015 Score=43.80 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=20.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.+.|++|+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999987
No 465
>PRK06696 uridine kinase; Validated
Probab=96.79 E-value=0.0048 Score=51.95 Aligned_cols=43 Identities=23% Similarity=0.183 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHc--CCCCe-EEEeCCCCccHHHHHHHHHHHhcC
Q 020071 30 NLDAVARLGIIARD--GNMPN-LILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 30 ~~~~~~~l~~~l~~--~~~~~-~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
..+.++.|...+.. ...|. +.+.|++|+||||+|+.+++.+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34556666666543 22233 699999999999999999999854
No 466
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.77 E-value=0.0013 Score=52.15 Aligned_cols=32 Identities=34% Similarity=0.426 Sum_probs=27.9
Q ss_pred CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEee
Q 020071 47 PNLILAGPPGTGKTTSILALAHELLGPNYREAVMELN 83 (331)
Q Consensus 47 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 83 (331)
++++|.|+.|+||||+.+.+++.+ +.+|+..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L-----~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKAL-----NLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHc-----CCCcccch
Confidence 358999999999999999999999 77777654
No 467
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.77 E-value=0.0044 Score=58.47 Aligned_cols=84 Identities=17% Similarity=0.147 Sum_probs=50.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHH
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQ 128 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~ 128 (331)
++++|+||+||||+|+.++... + +..++.... ......+..+.... .. ++-||||.. .+.....
T Consensus 372 Vil~G~pGSGKST~A~~l~~~~-----g--~~~vn~D~l---g~~~~~~~~a~~~L----~~-G~sVVIDaT-n~~~~~R 435 (526)
T TIGR01663 372 VIAVGFPGAGKSHFCKKFFQPA-----G--YKHVNADTL---GSTQNCLTACERAL----DQ-GKRCAIDNT-NPDAASR 435 (526)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-----C--CeEECcHHH---HHHHHHHHHHHHHH----hC-CCcEEEECC-CCCHHHH
Confidence 6999999999999999999864 2 344444332 12222222222221 22 334666665 4566677
Q ss_pred HHHHHHHHHhcCCcEEEEee
Q 020071 129 QALRRTMEIYSNSTRFALAC 148 (331)
Q Consensus 129 ~~Ll~~le~~~~~~~~I~~~ 148 (331)
..+.++..+..-.++++...
T Consensus 436 ~~~i~lAk~~gv~v~~i~~~ 455 (526)
T TIGR01663 436 AKFLQCARAAGIPCRCFLFN 455 (526)
T ss_pred HHHHHHHHHcCCeEEEEEeC
Confidence 77888877765555554443
No 468
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.77 E-value=0.017 Score=51.02 Aligned_cols=37 Identities=16% Similarity=0.359 Sum_probs=29.6
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 111 KHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 111 ~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
....+||||++.|++. .+..++.....++.+|++.+.
T Consensus 351 ~~~FiIIDEaQNLTph---eikTiltR~G~GsKIVl~gd~ 387 (436)
T COG1875 351 PDSFIIIDEAQNLTPH---ELKTILTRAGEGSKIVLTGDP 387 (436)
T ss_pred ccceEEEehhhccCHH---HHHHHHHhccCCCEEEEcCCH
Confidence 3579999999999875 566677777889999988753
No 469
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.77 E-value=0.0069 Score=58.03 Aligned_cols=40 Identities=15% Similarity=0.278 Sum_probs=28.3
Q ss_pred CCceEEEEeCCC-CCCHHHHHHHHHHHHHhcCCcEEEEeeC
Q 020071 110 GKHKVVVLDEAD-SMTAGAQQALRRTMEIYSNSTRFALACN 149 (331)
Q Consensus 110 ~~~~vviide~d-~l~~~~~~~Ll~~le~~~~~~~~I~~~~ 149 (331)
.++.++++||+- .+..+....+.+.+.+..++..+|+++.
T Consensus 487 ~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItH 527 (529)
T TIGR02868 487 ADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITH 527 (529)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 468899999975 4677777788888876544445555554
No 470
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.77 E-value=0.0093 Score=49.03 Aligned_cols=43 Identities=9% Similarity=0.192 Sum_probs=31.5
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CcEEEEeeCCCC
Q 020071 110 GKHKVVVLDEA-DSMTAGAQQALRRTMEIYSN-STRFALACNVSS 152 (331)
Q Consensus 110 ~~~~vviide~-d~l~~~~~~~Ll~~le~~~~-~~~~I~~~~~~~ 152 (331)
.++.++++||. ..+.......+.+.+.+... ...+|+++.+..
T Consensus 128 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 128 SNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 46789999995 56778888888888876543 456677776654
No 471
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.76 E-value=0.013 Score=47.23 Aligned_cols=43 Identities=9% Similarity=0.268 Sum_probs=30.9
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHHHhcC-CcEEEEeeCCCC
Q 020071 110 GKHKVVVLDEA-DSMTAGAQQALRRTMEIYSN-STRFALACNVSS 152 (331)
Q Consensus 110 ~~~~vviide~-d~l~~~~~~~Ll~~le~~~~-~~~~I~~~~~~~ 152 (331)
.+++++++||. ..+.......+.+.+.+... ...+|+++.+..
T Consensus 112 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~ 156 (173)
T cd03230 112 HDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE 156 (173)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 46789999996 56677888888888886543 355666666543
No 472
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.75 E-value=0.014 Score=48.44 Aligned_cols=47 Identities=13% Similarity=0.168 Sum_probs=34.0
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHHHh-cCCcEEEEeeCCCCCCCh
Q 020071 110 GKHKVVVLDEA-DSMTAGAQQALRRTMEIY-SNSTRFALACNVSSKIIE 156 (331)
Q Consensus 110 ~~~~vviide~-d~l~~~~~~~Ll~~le~~-~~~~~~I~~~~~~~~l~~ 156 (331)
.+++++++||. ..+.......+.+.+.+. .....+|+++.+...+..
T Consensus 144 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 144 SNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc
Confidence 35799999996 577788888888888754 234567777777655543
No 473
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.73 E-value=0.0016 Score=51.33 Aligned_cols=30 Identities=47% Similarity=0.633 Sum_probs=24.4
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEee
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVMELN 83 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 83 (331)
.++++|.||+||||+++.+. .+ +..++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~l-----g~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-EL-----GYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-Hh-----CCceeeHH
Confidence 37899999999999999999 66 55566543
No 474
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.73 E-value=0.0044 Score=50.75 Aligned_cols=141 Identities=21% Similarity=0.253 Sum_probs=63.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcccCC-CCCCceEEEEeCCC----CC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTL-PPGKHKVVVLDEAD----SM 123 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~-~~~~~~vviide~d----~l 123 (331)
++|+||+|+|||.+|-.+++.+ +.+++..+.--... .+......|... ..+-++ +++||-. .+
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~-----g~pvI~~Driq~y~------~l~v~Sgrp~~~el~~~~R-iyL~~r~l~~G~i 71 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKT-----GAPVISLDRIQCYP------ELSVGSGRPTPSELKGTRR-IYLDDRPLSDGII 71 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH-------EEEEE-SGGG-G------GGTTTTT---SGGGTT-EE-EES----GGG-S-
T ss_pred EEEECCCCCChhHHHHHHHHHh-----CCCEEEecceeccc------ccccccCCCCHHHHcccce-eeeccccccCCCc
Confidence 5999999999999999999999 66666654321100 000000000000 023344 7777532 12
Q ss_pred C-HHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcc-------cceeeecCCCHHHHHHHHHHHHHhc--CCCCCHH
Q 020071 124 T-AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSR-------CAIVRFSRLSDEEILSRLMVVVQEE--KVPYVPE 193 (331)
Q Consensus 124 ~-~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr-------~~~i~~~~~~~~~~~~~l~~~~~~~--~~~i~~~ 193 (331)
+ +++.+.|...+.+....--+|+-.-+.+-+....+++ ..+..++-++.+.......+++++- .-.-.+.
T Consensus 72 ~a~ea~~~Li~~v~~~~~~~~~IlEGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~p~~~~~S 151 (233)
T PF01745_consen 72 NAEEAHERLISEVNSYSAHGGLILEGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLRPDSSGPS 151 (233)
T ss_dssp -HHHHHHHHHHHHHTTTTSSEEEEEE--HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS--SSS--
T ss_pred CHHHHHHHHHHHHHhccccCceEEeCchHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcCCCCCCCc
Confidence 2 3456677778877777666777655444333333332 2334555555555555555555431 1112334
Q ss_pred HHHHHHHh
Q 020071 194 GLEAIIFT 201 (331)
Q Consensus 194 ~~~~l~~~ 201 (331)
.++.++..
T Consensus 152 ll~EL~~l 159 (233)
T PF01745_consen 152 LLEELVAL 159 (233)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 475
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.73 E-value=0.014 Score=43.44 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=19.5
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 020071 49 LILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~ 69 (331)
++|.|++|+|||++.+.+...
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 476
>PLN02459 probable adenylate kinase
Probab=96.73 E-value=0.029 Score=47.99 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=21.5
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++|.||||+||+|.+..+++.+
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~ 53 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLL 53 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999999987
No 477
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=96.71 E-value=0.013 Score=46.69 Aligned_cols=97 Identities=20% Similarity=0.224 Sum_probs=50.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCC----CCCceEEeecC-------CCCChHhHHHHHHHHHhcccCCCCCCceEEEE
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPN----YREAVMELNAS-------DDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVL 117 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~----~~~~~~~~~~~-------~~~~~~~i~~~i~~~~~~~~~~~~~~~~vvii 117 (331)
+++.|++|+|||++...+...-.... .+.....++.. +..+.+..+.....+.. .++.-++++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~------~ad~ii~V~ 75 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLS------GSQGLIFVV 75 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHh------hCCEEEEEE
Confidence 68999999999999999987532211 11222222221 11222222222222221 344567777
Q ss_pred eCCCCCC-HHHHHHHHHHHHHhcCCcEEEEeeCCCC
Q 020071 118 DEADSMT-AGAQQALRRTMEIYSNSTRFALACNVSS 152 (331)
Q Consensus 118 de~d~l~-~~~~~~Ll~~le~~~~~~~~I~~~~~~~ 152 (331)
|-.+..+ ......+.+++... .+++++++.|..+
T Consensus 76 D~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~D 110 (164)
T cd04162 76 DSADSERLPLARQELHQLLQHP-PDLPLVVLANKQD 110 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcC
Confidence 7555432 12233344444333 5677888887654
No 478
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=96.71 E-value=0.035 Score=43.77 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=19.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||+++..+...-
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~~ 24 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKGI 24 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998753
No 479
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.70 E-value=0.017 Score=49.92 Aligned_cols=26 Identities=38% Similarity=0.727 Sum_probs=22.6
Q ss_pred CeEEEeCCCCccHHHHHHHHHHHhcC
Q 020071 47 PNLILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 47 ~~~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
+.+.|+|++|+|||+++..++..+..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~ 101 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHG 101 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 34899999999999999999888754
No 480
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=96.69 E-value=0.013 Score=47.25 Aligned_cols=97 Identities=20% Similarity=0.317 Sum_probs=49.4
Q ss_pred CeEEEeCCCCccHHHHHHHHHHHhcCCCC-----------------CCceEEeecCCCCChHhHHH-HHHHHHhcccCCC
Q 020071 47 PNLILAGPPGTGKTTSILALAHELLGPNY-----------------REAVMELNASDDRGIDVVRN-KIKMFAQKKVTLP 108 (331)
Q Consensus 47 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~-----------------~~~~~~~~~~~~~~~~~i~~-~i~~~~~~~~~~~ 108 (331)
+.++|.||.|+|||++-..+...-..+.. ...++.+.+. ..++. .+.......
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~~~~~~~~~~~~~lvD~PGH-----~rlr~~~~~~~~~~~---- 74 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIAYNVNNSKGKKLRLVDIPGH-----PRLRSKLLDELKYLS---- 74 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEECCGSSTCGTCECEEEETT------HCCCHHHHHHHHHHG----
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCceEEeecCCCCEEEEEECCCc-----HHHHHHHHHhhhchh----
Confidence 46999999999999998888876322110 0111222111 22222 222211111
Q ss_pred CCCceEEEEeCCCCCC---HHHHHHHHHHHHHhc---CCcEEEEeeCCCCC
Q 020071 109 PGKHKVVVLDEADSMT---AGAQQALRRTMEIYS---NSTRFALACNVSSK 153 (331)
Q Consensus 109 ~~~~~vviide~d~l~---~~~~~~Ll~~le~~~---~~~~~I~~~~~~~~ 153 (331)
..+.-|++||-.. .. .+..+.|..+|-.+. ..++++++||..+.
T Consensus 75 ~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl 124 (181)
T PF09439_consen 75 NAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDL 124 (181)
T ss_dssp GEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTS
T ss_pred hCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccc
Confidence 2345677777542 22 345667777776544 67788888987554
No 481
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.69 E-value=0.033 Score=44.98 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=30.0
Q ss_pred ceEEEEeCC-CCCCHHHHHHHHHHHHHhc-CCcEEEEeeCCCC
Q 020071 112 HKVVVLDEA-DSMTAGAQQALRRTMEIYS-NSTRFALACNVSS 152 (331)
Q Consensus 112 ~~vviide~-d~l~~~~~~~Ll~~le~~~-~~~~~I~~~~~~~ 152 (331)
.+++++||. ..+.......+.+.+.+.. ....+|+++.+..
T Consensus 108 p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~ 150 (176)
T cd03238 108 GTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150 (176)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 789999996 5677888888888877643 3456777776654
No 482
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.041 Score=49.58 Aligned_cols=49 Identities=27% Similarity=0.529 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCCe--EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecC
Q 020071 34 VARLGIIARDGNMPN--LILAGPPGTGKTTSILALAHELLGPNYREAVMELNAS 85 (331)
Q Consensus 34 ~~~l~~~l~~~~~~~--~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 85 (331)
+.+|.+.+-.|-.|. +|+-|.||.||||+...++..+.... .+.++.+.
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGE 129 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGE 129 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCC
Confidence 357788888887766 69999999999999999999886432 55666544
No 483
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.68 E-value=0.015 Score=51.93 Aligned_cols=112 Identities=19% Similarity=0.281 Sum_probs=62.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEee-----------------cC----CCC--ChHhHHHHHHHHHhccc
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELN-----------------AS----DDR--GIDVVRNKIKMFAQKKV 105 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-----------------~~----~~~--~~~~i~~~i~~~~~~~~ 105 (331)
++|||..|+|||++--.+...+.+ .+...=+.+. +. ... ..+.+.-+..+++
T Consensus 117 lYlYG~VGcGKTmLMDlFy~~~~~-i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eIa---- 191 (467)
T KOG2383|consen 117 LYLYGSVGCGKTMLMDLFYDALPP-IWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEIA---- 191 (467)
T ss_pred EEEecccCcchhHHHHHHhhcCCc-hhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHHh----
Confidence 899999999999999988876643 1111100000 00 000 0111111222222
Q ss_pred CCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeeCCC-CC-------------CChhhhcccceeeecC
Q 020071 106 TLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSN-STRFALACNVS-SK-------------IIEPIQSRCAIVRFSR 169 (331)
Q Consensus 106 ~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~-~~~~I~~~~~~-~~-------------l~~~l~sr~~~i~~~~ 169 (331)
.+..++.+||++--.-...=.|.++++..-. .++++.|+|.. +. ....|..||.++.+..
T Consensus 192 ----~ea~lLCFDEfQVTDVADAmiL~rLf~~Lf~~GvVlvATSNR~P~dLYknGlQR~~F~PfI~~L~~rc~vi~ldS 266 (467)
T KOG2383|consen 192 ----EEAILLCFDEFQVTDVADAMILKRLFEHLFKNGVVLVATSNRAPEDLYKNGLQRENFIPFIALLEERCKVIQLDS 266 (467)
T ss_pred ----hhceeeeechhhhhhHHHHHHHHHHHHHHHhCCeEEEEeCCCChHHHhhcchhhhhhhhHHHHHHHhheEEecCC
Confidence 2356999999987766555566677765433 45555555542 21 2355677888876654
No 484
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.66 E-value=0.011 Score=47.35 Aligned_cols=36 Identities=33% Similarity=0.401 Sum_probs=27.4
Q ss_pred CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEe
Q 020071 47 PNLILAGPPGTGKTTSILALAHELLGPNYREAVMEL 82 (331)
Q Consensus 47 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 82 (331)
+-+.|.|++|+||||+++.+...+...+....++..
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~ 42 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 336999999999999999999998654444444443
No 485
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.66 E-value=0.0048 Score=54.60 Aligned_cols=49 Identities=24% Similarity=0.305 Sum_probs=38.9
Q ss_pred CCC-ccccCHHHHHHHHHHHHcC-----CCCe-EEEeCCCCccHHHHHHHHHHHhc
Q 020071 23 KVC-DIVGNLDAVARLGIIARDG-----NMPN-LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 23 ~~~-~~ig~~~~~~~l~~~l~~~-----~~~~-~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
.|+ ++.|.++.+..+...++.. .... ++|.||.|+|||++++.+.+.+.
T Consensus 58 ~f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 58 FFEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred CccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 455 8999999998877776542 2223 69999999999999999999884
No 486
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.66 E-value=0.011 Score=47.90 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=30.7
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CcEEEEeeCCC
Q 020071 110 GKHKVVVLDEA-DSMTAGAQQALRRTMEIYSN--STRFALACNVS 151 (331)
Q Consensus 110 ~~~~vviide~-d~l~~~~~~~Ll~~le~~~~--~~~~I~~~~~~ 151 (331)
.+++++++||. ..+.......+.+++.+... +..+|+++.+.
T Consensus 117 ~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 161 (178)
T cd03229 117 MDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL 161 (178)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46789999996 56778888888888876543 35667776654
No 487
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.64 E-value=0.006 Score=54.04 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhc
Q 020071 31 LDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 31 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
++....|..++..+. +++++|++|+||||+++++...+.
T Consensus 131 ~~~~~~L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 131 EAQASVIRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred HHHHHHHHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHh
Confidence 455567777777654 699999999999999999998873
No 488
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.63 E-value=0.002 Score=52.07 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=21.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+++.|++|+||||+++.+++.+.
T Consensus 5 i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 5 IILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHhhC
Confidence 79999999999999999999873
No 489
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.62 E-value=0.0056 Score=53.49 Aligned_cols=24 Identities=42% Similarity=0.693 Sum_probs=21.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcC
Q 020071 49 LILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
++|.||+|+||||++..++..+..
T Consensus 197 i~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 197 IALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 699999999999999999988743
No 490
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.62 E-value=0.035 Score=49.40 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=41.1
Q ss_pred HHHHHHHcCCCCe--EEEeCCCCccHHHHHHHHHHHhcCC----CCCCceEEeecCCCCChHhHHHHHHH
Q 020071 36 RLGIIARDGNMPN--LILAGPPGTGKTTSILALAHELLGP----NYREAVMELNASDDRGIDVVRNKIKM 99 (331)
Q Consensus 36 ~l~~~l~~~~~~~--~ll~G~~G~GKt~la~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~i~~~i~~ 99 (331)
.+...+.+|-.+. +.++||+|+|||+++..++.....+ +.+..++.++.......+.+.+..+.
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~ 159 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEA 159 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHH
Confidence 3444454443333 5999999999999999998765321 11346777777665455666655543
No 491
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.62 E-value=0.02 Score=47.29 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=19.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|.||.|+||||+.+.++...
T Consensus 28 ~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 28 ILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6999999999999999998644
No 492
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.62 E-value=0.0023 Score=49.83 Aligned_cols=27 Identities=37% Similarity=0.585 Sum_probs=23.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceE
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVM 80 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~ 80 (331)
+-+.||||+||||+++.+++.+ +.+++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~-----gl~~v 29 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHL-----GLKLV 29 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHh-----CCcee
Confidence 5789999999999999999998 55554
No 493
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.61 E-value=0.0061 Score=54.67 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=24.9
Q ss_pred CCCCeEEEeCCCCccHHHHHHHHHHHhcCC
Q 020071 44 GNMPNLILAGPPGTGKTTSILALAHELLGP 73 (331)
Q Consensus 44 ~~~~~~ll~G~~G~GKt~la~~l~~~l~~~ 73 (331)
|+.-..+++||+|+|||++++.+++.+..+
T Consensus 131 GkGQR~LIvG~pGtGKTTLl~~la~~i~~~ 160 (380)
T PRK12608 131 GKGQRGLIVAPPRAGKTVLLQQIAAAVAAN 160 (380)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 333358999999999999999999988654
No 494
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.61 E-value=0.0025 Score=53.72 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=21.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|.||||+||||+++.+++.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999988
No 495
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.58 E-value=0.014 Score=48.72 Aligned_cols=43 Identities=12% Similarity=0.300 Sum_probs=32.6
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCC
Q 020071 110 GKHKVVVLDEA-DSMTAGAQQALRRTMEIYSNSTRFALACNVSS 152 (331)
Q Consensus 110 ~~~~vviide~-d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~ 152 (331)
.++.++++||. ..+.......+.+++.+......+|+++.+..
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~ 190 (211)
T cd03264 147 GDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVE 190 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 46899999996 56778888899999987655566777776543
No 496
>PLN02840 tRNA dimethylallyltransferase
Probab=96.58 E-value=0.031 Score=51.14 Aligned_cols=23 Identities=39% Similarity=0.752 Sum_probs=21.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
++|.||+|+|||+++..+++.+.
T Consensus 24 i~I~GptgsGKTtla~~La~~~~ 46 (421)
T PLN02840 24 IVISGPTGAGKSRLALELAKRLN 46 (421)
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 79999999999999999999984
No 497
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.55 E-value=0.028 Score=51.90 Aligned_cols=25 Identities=40% Similarity=0.569 Sum_probs=22.0
Q ss_pred Ce-EEEeCCCCccHHHHHHHHHHHhc
Q 020071 47 PN-LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 47 ~~-~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
|. ++++|++|+||||++..++..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 45 69999999999999999998864
No 498
>PRK07667 uridine kinase; Provisional
Probab=96.54 E-value=0.0057 Score=50.25 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGP 73 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~ 73 (331)
+.+.|++|+||||+++.+++.+...
T Consensus 20 IgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 20 LGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC
Confidence 6999999999999999999998644
No 499
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.54 E-value=0.018 Score=56.32 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=26.5
Q ss_pred cCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHH
Q 020071 29 GNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILA 65 (331)
Q Consensus 29 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~ 65 (331)
.|.+++..+...+.+...-+.++.||.|+|||.++..
T Consensus 239 ~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l 275 (630)
T TIGR00643 239 AQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAAL 275 (630)
T ss_pred HHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHH
Confidence 3666666666665554434589999999999987643
No 500
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.54 E-value=0.018 Score=53.70 Aligned_cols=48 Identities=27% Similarity=0.515 Sum_probs=34.2
Q ss_pred HHHHHHHHcCCCCe--EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeec
Q 020071 35 ARLGIIARDGNMPN--LILAGPPGTGKTTSILALAHELLGPNYREAVMELNA 84 (331)
Q Consensus 35 ~~l~~~l~~~~~~~--~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 84 (331)
..|.+.+..|-.+. ++++|+||+|||+++..++..+...+ ..++.++.
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~ 130 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSG 130 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEC
Confidence 46777776665554 69999999999999999988764332 24445444
Done!