Query 020071
Match_columns 331
No_of_seqs 258 out of 2826
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 11:20:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020071.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020071hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sxj_C Activator 1 40 kDa subu 100.0 4.9E-49 1.7E-53 352.7 34.5 326 1-327 1-333 (340)
2 1iqp_A RFCS; clamp loader, ext 100.0 2.7E-46 9.3E-51 333.2 31.6 318 7-326 7-326 (327)
3 2chq_A Replication factor C sm 100.0 3.5E-46 1.2E-50 331.3 29.7 312 12-325 4-317 (319)
4 1sxj_B Activator 1 37 kDa subu 100.0 9.6E-45 3.3E-49 322.6 31.7 314 10-326 6-321 (323)
5 1sxj_D Activator 1 41 kDa subu 100.0 5.7E-44 1.9E-48 321.6 29.2 316 9-324 21-353 (353)
6 3u61_B DNA polymerase accessor 100.0 2.1E-42 7.2E-47 307.8 32.3 305 6-325 7-321 (324)
7 1sxj_E Activator 1 40 kDa subu 100.0 6.8E-42 2.3E-46 308.2 30.2 311 13-325 2-353 (354)
8 1jr3_A DNA polymerase III subu 100.0 4E-40 1.4E-44 298.7 37.8 312 12-326 3-361 (373)
9 2gno_A DNA polymerase III, gam 100.0 2.8E-38 9.5E-43 276.7 22.9 281 29-325 1-298 (305)
10 3pvs_A Replication-associated 100.0 1.9E-36 6.5E-41 278.3 30.2 265 10-285 11-305 (447)
11 1a5t_A Delta prime, HOLB; zinc 100.0 4.3E-36 1.5E-40 267.6 24.1 282 30-324 7-322 (334)
12 1jr3_D DNA polymerase III, del 100.0 9.1E-34 3.1E-38 254.0 18.9 279 36-323 8-333 (343)
13 2chg_A Replication factor C sm 100.0 1.8E-31 6.3E-36 224.0 24.6 221 12-233 4-224 (226)
14 1njg_A DNA polymerase III subu 100.0 2.6E-29 9E-34 213.7 24.0 220 11-233 9-249 (250)
15 1sxj_A Activator 1 95 kDa subu 100.0 1.6E-28 5.3E-33 230.9 21.2 237 7-250 21-292 (516)
16 3pfi_A Holliday junction ATP-d 99.9 7.2E-26 2.5E-30 202.3 22.7 208 10-231 14-250 (338)
17 3uk6_A RUVB-like 2; hexameric 99.9 2.1E-25 7.3E-30 201.5 21.2 219 11-233 29-328 (368)
18 1hqc_A RUVB; extended AAA-ATPa 99.9 2.8E-24 9.5E-29 190.8 24.1 203 15-230 2-233 (324)
19 2c9o_A RUVB-like 1; hexameric 99.9 1.5E-24 5.3E-29 200.8 21.4 120 113-233 297-435 (456)
20 3bos_A Putative DNA replicatio 99.9 8.3E-24 2.8E-28 179.5 16.6 211 10-233 12-241 (242)
21 1fnn_A CDC6P, cell division co 99.9 1.6E-22 5.3E-27 183.9 25.6 282 13-299 8-344 (389)
22 1in4_A RUVB, holliday junction 99.9 5.7E-22 2E-26 176.4 24.1 205 14-232 14-247 (334)
23 2v1u_A Cell division control p 99.9 1.3E-21 4.3E-26 177.6 25.4 278 13-298 10-343 (387)
24 2qby_B CDC6 homolog 3, cell di 99.9 3.6E-22 1.2E-26 181.2 18.5 275 12-299 10-332 (384)
25 3vfd_A Spastin; ATPase, microt 99.9 2.8E-21 9.6E-26 175.6 22.1 188 14-213 104-325 (389)
26 3syl_A Protein CBBX; photosynt 99.9 6.3E-22 2.2E-26 174.4 15.7 203 9-217 7-259 (309)
27 3b9p_A CG5977-PA, isoform A; A 99.9 6.6E-21 2.3E-25 167.0 21.9 190 14-215 10-235 (297)
28 3eie_A Vacuolar protein sortin 99.9 4.8E-21 1.6E-25 169.7 18.3 196 13-216 6-231 (322)
29 2qby_A CDC6 homolog 1, cell di 99.9 6.6E-21 2.3E-25 172.7 18.9 275 13-299 11-341 (386)
30 2qp9_X Vacuolar protein sortin 99.9 5E-21 1.7E-25 171.5 16.8 191 14-216 40-264 (355)
31 2z4s_A Chromosomal replication 99.9 3.6E-21 1.2E-25 177.0 15.3 212 18-235 97-332 (440)
32 1ofh_A ATP-dependent HSL prote 99.9 8.9E-21 3E-25 167.0 15.7 203 25-234 15-298 (310)
33 3d8b_A Fidgetin-like protein 1 99.9 2.4E-20 8.2E-25 167.3 18.5 194 15-216 74-298 (357)
34 1lv7_A FTSH; alpha/beta domain 99.9 5.2E-20 1.8E-24 157.8 19.2 204 14-231 1-248 (257)
35 2r44_A Uncharacterized protein 99.8 6.4E-20 2.2E-24 163.2 20.3 208 13-230 15-292 (331)
36 2qz4_A Paraplegin; AAA+, SPG7, 99.8 2.6E-19 8.9E-24 153.8 22.5 198 21-230 2-244 (262)
37 1xwi_A SKD1 protein; VPS4B, AA 99.8 3.9E-19 1.3E-23 157.1 24.1 188 18-216 5-226 (322)
38 4b4t_J 26S protease regulatory 99.8 2.2E-19 7.7E-24 160.2 21.6 198 20-230 143-384 (405)
39 2zan_A Vacuolar protein sortin 99.8 1.1E-19 3.8E-24 167.4 19.2 192 14-216 123-348 (444)
40 3h4m_A Proteasome-activating n 99.8 8.9E-20 3E-24 158.8 17.3 204 19-231 11-254 (285)
41 1l8q_A Chromosomal replication 99.8 3.2E-20 1.1E-24 164.6 14.3 186 22-218 8-213 (324)
42 3pxg_A Negative regulator of g 99.8 2.4E-20 8.3E-25 173.0 11.7 195 10-217 165-382 (468)
43 3te6_A Regulatory protein SIR3 99.8 8.4E-19 2.9E-23 153.0 20.1 198 15-217 12-283 (318)
44 4fcw_A Chaperone protein CLPB; 99.8 9.5E-20 3.2E-24 160.6 13.6 185 25-217 17-275 (311)
45 4b4t_L 26S protease subunit RP 99.8 2.1E-18 7.1E-23 156.5 21.5 197 21-230 177-417 (437)
46 4b4t_I 26S protease regulatory 99.8 1.9E-18 6.6E-23 154.6 20.2 201 17-230 174-418 (437)
47 1g8p_A Magnesium-chelatase 38 99.8 1.6E-18 5.5E-23 155.2 19.5 215 17-231 16-318 (350)
48 2bjv_A PSP operon transcriptio 99.8 1.1E-18 3.7E-23 150.3 17.6 204 23-229 4-251 (265)
49 4b4t_H 26S protease regulatory 99.8 2.8E-18 9.6E-23 155.1 20.7 196 22-230 206-445 (467)
50 4b4t_M 26S protease regulatory 99.8 1.3E-18 4.5E-23 157.6 18.2 199 20-231 176-418 (434)
51 4b4t_K 26S protease regulatory 99.8 3.1E-18 1.1E-22 155.1 20.0 196 22-230 169-409 (428)
52 2ce7_A Cell division protein F 99.8 5.1E-18 1.7E-22 156.2 19.3 201 19-232 10-253 (476)
53 1jbk_A CLPB protein; beta barr 99.8 3.8E-19 1.3E-23 145.2 10.1 164 12-179 9-194 (195)
54 1qvr_A CLPB protein; coiled co 99.8 2.1E-18 7.1E-23 171.3 14.6 202 12-217 157-389 (854)
55 3cf0_A Transitional endoplasmi 99.8 1.1E-17 3.7E-22 146.6 17.6 185 18-215 8-231 (301)
56 3m6a_A ATP-dependent protease 99.8 2.5E-18 8.4E-23 162.1 14.1 214 12-234 59-340 (543)
57 1r6b_X CLPA protein; AAA+, N-t 99.8 7.6E-18 2.6E-22 165.6 17.7 218 9-231 170-429 (758)
58 1ojl_A Transcriptional regulat 99.8 2.9E-17 9.8E-22 143.9 19.2 204 25-231 2-248 (304)
59 3pxi_A Negative regulator of g 99.8 4.7E-18 1.6E-22 167.0 15.2 194 10-216 165-381 (758)
60 2p65_A Hypothetical protein PF 99.8 1.8E-18 6.2E-23 140.4 9.6 161 7-171 4-187 (187)
61 2r62_A Cell division protease 99.8 1.5E-19 5.1E-24 156.0 3.2 204 18-234 4-252 (268)
62 1d2n_A N-ethylmaleimide-sensit 99.7 1E-17 3.5E-22 144.7 13.4 178 24-218 32-247 (272)
63 1um8_A ATP-dependent CLP prote 99.7 1.2E-17 4.3E-22 150.9 14.2 202 26-232 22-362 (376)
64 3pxi_A Negative regulator of g 99.7 3.1E-17 1E-21 161.2 16.4 183 25-216 491-720 (758)
65 1r6b_X CLPA protein; AAA+, N-t 99.7 9E-17 3.1E-21 158.0 17.6 180 25-216 458-711 (758)
66 3hu3_A Transitional endoplasmi 99.7 6.8E-17 2.3E-21 149.8 14.1 187 17-216 196-418 (489)
67 1qvr_A CLPB protein; coiled co 99.7 5.8E-17 2E-21 160.9 13.3 184 24-216 557-815 (854)
68 3k1j_A LON protease, ATP-depen 99.7 1.3E-16 4.5E-21 152.5 14.6 217 14-232 30-372 (604)
69 1w5s_A Origin recognition comp 99.7 1.3E-15 4.4E-20 139.2 20.1 213 15-231 15-289 (412)
70 2dhr_A FTSH; AAA+ protein, hex 99.7 3E-16 1E-20 145.2 15.8 207 15-232 22-268 (499)
71 1ixz_A ATP-dependent metallopr 99.7 2.4E-15 8.2E-20 128.5 17.6 206 17-232 8-253 (254)
72 1iy2_A ATP-dependent metallopr 99.6 1.5E-14 5E-19 125.3 19.3 203 20-232 35-277 (278)
73 3hws_A ATP-dependent CLP prote 99.6 4.6E-16 1.6E-20 140.0 9.6 186 26-216 16-318 (363)
74 3cf2_A TER ATPase, transitiona 99.6 5.5E-15 1.9E-19 143.2 14.5 171 21-204 200-405 (806)
75 3n70_A Transport activator; si 99.6 5.3E-15 1.8E-19 115.2 11.0 132 26-170 2-144 (145)
76 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 3.3E-14 1.1E-18 131.8 17.4 199 25-229 22-280 (500)
77 3t15_A Ribulose bisphosphate c 99.6 6.3E-14 2.1E-18 122.1 17.8 148 49-207 39-221 (293)
78 1g41_A Heat shock protein HSLU 99.6 7.7E-14 2.6E-18 126.6 16.1 105 112-216 251-403 (444)
79 3cf2_A TER ATPase, transitiona 99.5 1.1E-14 3.9E-19 141.0 8.6 180 21-213 473-694 (806)
80 3f9v_A Minichromosome maintena 99.5 1.6E-15 5.5E-20 144.1 2.3 157 25-183 295-490 (595)
81 3co5_A Putative two-component 99.5 1.7E-14 5.7E-19 112.0 6.7 128 26-170 5-142 (143)
82 2x8a_A Nuclear valosin-contain 99.5 1.3E-12 4.3E-17 112.6 18.1 174 20-201 5-211 (274)
83 3dzd_A Transcriptional regulat 99.5 5.8E-13 2E-17 119.5 16.1 189 25-217 129-358 (368)
84 2qen_A Walker-type ATPase; unk 99.5 2.1E-12 7.1E-17 115.1 19.6 180 23-215 10-248 (350)
85 1ny5_A Transcriptional regulat 99.5 4.1E-12 1.4E-16 114.8 19.5 203 24-229 136-381 (387)
86 1ypw_A Transitional endoplasmi 99.4 5.9E-13 2E-17 130.9 11.7 182 18-208 197-409 (806)
87 2fna_A Conserved hypothetical 99.4 1E-11 3.6E-16 110.8 17.2 177 23-216 11-253 (357)
88 1ypw_A Transitional endoplasmi 99.4 1E-14 3.6E-19 143.3 -5.1 155 19-185 471-663 (806)
89 3ec2_A DNA replication protein 99.4 2.7E-12 9.3E-17 103.5 9.5 130 17-153 2-145 (180)
90 1u0j_A DNA replication protein 99.2 5.3E-11 1.8E-15 100.5 11.4 133 35-191 91-258 (267)
91 3upu_A ATP-dependent DNA helic 99.2 5.2E-11 1.8E-15 110.2 9.2 139 6-150 5-164 (459)
92 3f8t_A Predicted ATPase involv 99.1 4E-10 1.4E-14 101.9 12.9 169 27-201 215-426 (506)
93 4akg_A Glutathione S-transfera 99.1 9.3E-10 3.2E-14 118.6 16.7 166 14-185 1226-1433(2695)
94 2w58_A DNAI, primosome compone 99.1 1.9E-10 6.5E-15 94.3 7.4 127 14-151 14-159 (202)
95 2kjq_A DNAA-related protein; s 99.1 3.8E-10 1.3E-14 87.8 8.3 119 23-163 15-140 (149)
96 1tue_A Replication protein E1; 99.1 7.5E-10 2.5E-14 89.3 9.4 115 32-168 43-177 (212)
97 2qgz_A Helicase loader, putati 98.9 5.7E-10 1.9E-14 97.6 5.5 130 14-150 113-257 (308)
98 4akg_A Glutathione S-transfera 98.9 5.7E-08 1.9E-12 105.0 19.4 168 31-216 632-836 (2695)
99 1z6t_A APAF-1, apoptotic prote 98.8 2.3E-07 7.8E-12 88.5 17.4 179 20-216 119-331 (591)
100 3vkg_A Dynein heavy chain, cyt 98.8 8.2E-06 2.8E-10 89.3 29.9 168 31-216 591-796 (3245)
101 3vkg_A Dynein heavy chain, cyt 98.7 2E-07 6.9E-12 101.5 16.1 143 36-184 1296-1470(3245)
102 2a5y_B CED-4; apoptosis; HET: 98.7 4E-07 1.4E-11 86.0 14.8 175 28-212 131-336 (549)
103 3sfz_A APAF-1, apoptotic pepti 98.6 2.6E-06 8.8E-11 88.0 20.2 182 20-213 119-328 (1249)
104 1jql_B DNA polymerase III, del 98.5 1.7E-06 5.7E-11 66.2 11.3 123 37-167 9-139 (140)
105 1ye8_A Protein THEP1, hypothet 98.4 1.7E-06 5.7E-11 69.1 9.7 70 110-181 98-174 (178)
106 2r2a_A Uncharacterized protein 98.2 1.1E-06 3.9E-11 71.3 5.5 116 49-169 8-152 (199)
107 2orw_A Thymidine kinase; TMTK, 98.2 5.9E-07 2E-11 72.2 3.7 106 49-163 6-131 (184)
108 1vt4_I APAF-1 related killer D 98.2 6E-05 2E-09 74.9 18.2 142 27-183 130-311 (1221)
109 2b8t_A Thymidine kinase; deoxy 98.0 1.3E-05 4.4E-10 66.2 7.8 93 49-149 15-124 (223)
110 2vhj_A Ntpase P4, P4; non- hyd 97.9 5.2E-05 1.8E-09 65.6 10.1 69 49-125 126-196 (331)
111 1g5t_A COB(I)alamin adenosyltr 97.9 4.8E-05 1.6E-09 61.0 8.7 107 48-163 30-172 (196)
112 2fz4_A DNA repair protein RAD2 97.8 0.0001 3.5E-09 61.5 9.8 109 30-150 95-228 (237)
113 3ctd_A Putative ATPase, AAA fa 97.7 0.00047 1.6E-08 55.0 11.6 88 234-322 33-121 (213)
114 3e1s_A Exodeoxyribonuclease V, 97.7 7.7E-05 2.6E-09 70.5 7.7 112 30-150 191-315 (574)
115 1ly1_A Polynucleotide kinase; 97.7 0.00015 5.2E-09 57.4 8.4 20 49-68 5-24 (181)
116 2r8r_A Sensor protein; KDPD, P 97.6 0.00019 6.5E-09 58.9 7.7 126 49-180 9-174 (228)
117 3a4m_A L-seryl-tRNA(SEC) kinas 97.5 0.00044 1.5E-08 58.5 9.7 23 48-70 6-28 (260)
118 3dl0_A Adenylate kinase; phosp 97.5 0.0023 7.8E-08 52.2 13.7 22 49-70 3-24 (216)
119 1w36_D RECD, exodeoxyribonucle 97.5 0.00025 8.5E-09 67.6 8.3 99 48-150 166-298 (608)
120 2j9r_A Thymidine kinase; TK1, 97.5 0.00033 1.1E-08 56.9 7.6 96 49-149 31-136 (214)
121 3cmu_A Protein RECA, recombina 97.5 0.00032 1.1E-08 74.2 9.3 37 37-73 1415-1454(2050)
122 2cvh_A DNA repair and recombin 97.4 0.0027 9.2E-08 51.8 13.0 20 49-68 23-42 (220)
123 3lw7_A Adenylate kinase relate 97.4 0.00044 1.5E-08 54.2 7.8 22 48-70 3-24 (179)
124 1xx6_A Thymidine kinase; NESG, 97.4 0.00013 4.4E-09 58.6 4.4 90 49-149 11-116 (191)
125 3b6e_A Interferon-induced heli 97.4 0.0004 1.4E-08 56.6 7.3 39 29-70 34-72 (216)
126 2vli_A Antibiotic resistance p 97.4 0.00057 2E-08 54.2 7.9 23 48-70 7-29 (183)
127 3h1t_A Type I site-specific re 97.4 0.0005 1.7E-08 65.4 8.6 42 30-72 183-224 (590)
128 2i3b_A HCR-ntpase, human cance 97.3 0.00088 3E-08 53.7 8.8 71 109-181 103-182 (189)
129 3tlx_A Adenylate kinase 2; str 97.3 0.0047 1.6E-07 51.5 13.5 23 48-70 31-53 (243)
130 2iut_A DNA translocase FTSK; n 97.3 0.01 3.5E-07 55.4 16.8 69 112-180 344-420 (574)
131 2orv_A Thymidine kinase; TP4A 97.3 0.0015 5.2E-08 53.6 9.9 97 49-150 22-125 (234)
132 2r9g_A AAA ATPase, central reg 97.3 0.0039 1.3E-07 49.3 11.7 88 233-322 11-99 (204)
133 3fb4_A Adenylate kinase; psych 97.3 0.0027 9.3E-08 51.8 11.6 22 49-70 3-24 (216)
134 3sr0_A Adenylate kinase; phosp 97.3 0.0021 7.1E-08 52.3 10.5 22 49-70 3-24 (206)
135 1t6n_A Probable ATP-dependent 97.3 0.0053 1.8E-07 50.1 13.2 43 109-151 156-200 (220)
136 3bge_A Predicted ATPase; struc 97.2 0.0018 6.2E-08 51.0 9.1 50 236-285 7-57 (201)
137 3llm_A ATP-dependent RNA helic 97.2 0.002 6.7E-08 53.5 10.0 20 48-67 78-97 (235)
138 1nrj_B SR-beta, signal recogni 97.2 0.0022 7.7E-08 52.2 9.7 107 44-153 10-132 (218)
139 3zvl_A Bifunctional polynucleo 97.2 0.00091 3.1E-08 60.7 7.8 76 49-140 261-336 (416)
140 1ltq_A Polynucleotide kinase; 97.2 0.0021 7.3E-08 55.4 9.8 22 49-70 5-26 (301)
141 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.0022 7.5E-08 52.8 9.5 23 49-71 26-48 (235)
142 3umf_A Adenylate kinase; rossm 97.2 0.0019 6.4E-08 52.9 8.8 22 49-70 32-53 (217)
143 2zr9_A Protein RECA, recombina 97.1 0.002 6.7E-08 56.9 9.6 23 49-71 64-86 (349)
144 3dm5_A SRP54, signal recogniti 97.1 0.0051 1.8E-07 55.8 12.4 27 49-75 103-129 (443)
145 3io5_A Recombination and repai 97.1 0.0026 8.8E-08 54.9 9.8 85 36-124 13-124 (333)
146 3trf_A Shikimate kinase, SK; a 97.1 0.00036 1.2E-08 55.6 4.3 30 47-81 6-35 (185)
147 1qhx_A CPT, protein (chloramph 97.1 0.00043 1.5E-08 54.7 4.6 22 49-70 6-27 (178)
148 3kl4_A SRP54, signal recogniti 97.1 0.0035 1.2E-07 56.8 11.0 26 49-74 100-125 (433)
149 1xp8_A RECA protein, recombina 97.1 0.0026 9E-08 56.4 10.0 23 49-71 77-99 (366)
150 1w4r_A Thymidine kinase; type 97.1 0.0013 4.5E-08 52.5 7.2 93 49-148 23-124 (195)
151 3hr8_A Protein RECA; alpha and 97.1 0.0019 6.4E-08 57.0 8.8 37 35-71 47-86 (356)
152 1hv8_A Putative ATP-dependent 97.0 0.0036 1.2E-07 55.2 10.5 41 110-150 146-187 (367)
153 1qde_A EIF4A, translation init 97.0 0.0038 1.3E-07 51.1 9.8 41 110-150 154-195 (224)
154 1v5w_A DMC1, meiotic recombina 97.0 0.0032 1.1E-07 55.5 9.8 22 49-70 125-146 (343)
155 1svm_A Large T antigen; AAA+ f 97.0 0.0027 9.1E-08 56.6 9.0 22 49-70 172-193 (377)
156 3kb2_A SPBC2 prophage-derived 97.0 0.00072 2.5E-08 52.9 4.7 23 48-70 3-25 (173)
157 1u94_A RECA protein, recombina 97.0 0.003 1E-07 55.8 9.2 68 49-124 66-154 (356)
158 1vec_A ATP-dependent RNA helic 97.0 0.0058 2E-07 49.2 10.2 42 109-150 144-186 (206)
159 2ga8_A Hypothetical 39.9 kDa p 96.9 0.0007 2.4E-08 59.4 4.7 37 34-70 12-48 (359)
160 3vaa_A Shikimate kinase, SK; s 96.9 0.00079 2.7E-08 54.4 4.5 29 48-81 27-55 (199)
161 3iij_A Coilin-interacting nucl 96.9 0.00069 2.4E-08 53.7 4.1 24 47-70 12-35 (180)
162 1via_A Shikimate kinase; struc 96.9 0.00064 2.2E-08 53.6 3.9 24 47-70 5-28 (175)
163 2dr3_A UPF0273 protein PH0284; 96.9 0.0048 1.6E-07 51.2 9.6 23 49-71 26-48 (247)
164 1zuh_A Shikimate kinase; alpha 96.9 0.00076 2.6E-08 52.8 4.2 32 46-82 7-38 (168)
165 3pey_A ATP-dependent RNA helic 96.9 0.0095 3.2E-07 53.0 11.9 42 109-150 143-186 (395)
166 3cmw_A Protein RECA, recombina 96.8 0.0024 8.2E-08 66.9 8.3 23 49-71 1085-1107(1706)
167 2iyv_A Shikimate kinase, SK; t 96.8 0.00083 2.9E-08 53.4 4.0 29 48-81 4-32 (184)
168 2ius_A DNA translocase FTSK; n 96.8 0.021 7.2E-07 52.8 13.5 70 112-181 298-375 (512)
169 1rif_A DAR protein, DNA helica 96.8 0.0057 2E-07 52.2 9.2 39 29-70 114-152 (282)
170 3jvv_A Twitching mobility prot 96.8 0.018 6.3E-07 50.8 12.5 92 48-152 125-232 (356)
171 3fmo_B ATP-dependent RNA helic 96.8 0.0098 3.4E-07 51.3 10.6 41 110-150 234-276 (300)
172 1kht_A Adenylate kinase; phosp 96.8 0.001 3.6E-08 53.0 4.0 25 48-72 5-29 (192)
173 3fht_A ATP-dependent RNA helic 96.7 0.011 3.6E-07 53.1 11.0 41 110-150 167-209 (412)
174 1y63_A LMAJ004144AAA protein; 96.7 0.0011 3.8E-08 52.7 4.0 23 47-69 11-33 (184)
175 1kag_A SKI, shikimate kinase I 96.7 0.0013 4.4E-08 51.6 4.2 23 48-70 6-28 (173)
176 2ze6_A Isopentenyl transferase 96.7 0.0014 4.6E-08 55.2 4.5 23 48-70 3-25 (253)
177 3bor_A Human initiation factor 96.7 0.011 3.6E-07 49.0 9.9 41 110-150 172-213 (237)
178 3e2i_A Thymidine kinase; Zn-bi 96.7 0.0022 7.4E-08 52.1 5.4 91 49-148 31-135 (219)
179 1gvn_B Zeta; postsegregational 96.7 0.0031 1E-07 54.1 6.6 22 49-70 36-57 (287)
180 1vma_A Cell division protein F 96.7 0.0056 1.9E-07 52.9 8.2 25 49-73 107-131 (306)
181 1e6c_A Shikimate kinase; phosp 96.6 0.0013 4.3E-08 51.6 3.7 23 48-70 4-26 (173)
182 3t61_A Gluconokinase; PSI-biol 96.6 0.0016 5.4E-08 52.6 4.3 23 48-70 20-42 (202)
183 2oxc_A Probable ATP-dependent 96.6 0.0053 1.8E-07 50.6 7.5 40 110-149 165-206 (230)
184 2gxq_A Heat resistant RNA depe 96.6 0.013 4.4E-07 47.2 9.7 42 109-150 142-184 (207)
185 3iuy_A Probable ATP-dependent 96.6 0.012 4.2E-07 48.2 9.7 42 109-150 165-207 (228)
186 1aky_A Adenylate kinase; ATP:A 96.6 0.002 7E-08 52.8 4.9 23 48-70 6-28 (220)
187 2cdn_A Adenylate kinase; phosp 96.6 0.0015 5.1E-08 52.7 4.0 22 49-70 23-44 (201)
188 2rhm_A Putative kinase; P-loop 96.6 0.0015 5.3E-08 52.1 3.9 22 49-70 8-29 (193)
189 1nks_A Adenylate kinase; therm 96.6 0.0014 4.7E-08 52.3 3.5 25 48-72 3-27 (194)
190 1pzn_A RAD51, DNA repair and r 96.6 0.011 3.9E-07 52.0 9.7 22 49-70 134-155 (349)
191 2p5t_B PEZT; postsegregational 96.6 0.0014 4.9E-08 55.1 3.7 22 49-70 35-56 (253)
192 2pt5_A Shikimate kinase, SK; a 96.6 0.0017 5.8E-08 50.6 3.9 22 49-70 3-24 (168)
193 3exa_A TRNA delta(2)-isopenten 96.6 0.0037 1.3E-07 53.9 6.2 22 49-70 6-27 (322)
194 2c95_A Adenylate kinase 1; tra 96.5 0.0017 5.8E-08 52.0 3.9 23 48-70 11-33 (196)
195 1tev_A UMP-CMP kinase; ploop, 96.5 0.0017 5.8E-08 51.9 3.8 22 49-70 6-27 (196)
196 2eyu_A Twitching motility prot 96.5 0.013 4.3E-07 49.5 9.3 23 49-71 28-50 (261)
197 1q0u_A Bstdead; DEAD protein, 96.5 0.012 4.1E-07 48.0 9.0 41 110-150 149-190 (219)
198 3cm0_A Adenylate kinase; ATP-b 96.5 0.002 6.8E-08 51.2 4.1 22 49-70 7-28 (186)
199 3fmp_B ATP-dependent RNA helic 96.5 0.015 5.2E-07 53.5 10.4 42 110-151 234-277 (479)
200 3cmu_A Protein RECA, recombina 96.5 0.0064 2.2E-07 64.7 8.5 26 49-74 1084-1109(2050)
201 1qf9_A UMP/CMP kinase, protein 96.4 0.0022 7.5E-08 51.1 4.0 22 49-70 9-30 (194)
202 3bh0_A DNAB-like replicative h 96.4 0.014 4.7E-07 50.7 9.4 47 36-85 57-105 (315)
203 1xti_A Probable ATP-dependent 96.4 0.022 7.4E-07 50.7 10.9 42 109-150 150-193 (391)
204 2bwj_A Adenylate kinase 5; pho 96.4 0.0018 6.3E-08 51.9 3.3 23 48-70 14-36 (199)
205 1ukz_A Uridylate kinase; trans 96.4 0.0024 8.4E-08 51.5 4.0 23 48-70 17-39 (203)
206 1ak2_A Adenylate kinase isoenz 96.4 0.0035 1.2E-07 51.9 5.0 23 48-70 18-40 (233)
207 2xau_A PRE-mRNA-splicing facto 96.4 0.017 6E-07 56.5 10.7 28 39-68 104-131 (773)
208 3be4_A Adenylate kinase; malar 96.4 0.002 6.7E-08 52.8 3.4 23 48-70 7-29 (217)
209 4eun_A Thermoresistant glucoki 96.4 0.0035 1.2E-07 50.5 4.9 23 48-70 31-53 (200)
210 2j37_W Signal recognition part 96.4 0.041 1.4E-06 50.8 12.5 25 49-73 104-128 (504)
211 3dkp_A Probable ATP-dependent 96.4 0.03 1E-06 46.4 10.7 40 109-148 173-217 (245)
212 1n0w_A DNA repair protein RAD5 96.4 0.0071 2.4E-07 50.1 6.8 38 49-86 27-68 (243)
213 3gfo_A Cobalt import ATP-bindi 96.3 0.017 5.8E-07 49.0 9.1 45 110-154 160-207 (275)
214 1zd8_A GTP:AMP phosphotransfer 96.3 0.0019 6.6E-08 53.2 3.1 23 48-70 9-31 (227)
215 3vkw_A Replicase large subunit 96.3 0.0072 2.5E-07 54.7 7.0 90 49-150 164-269 (446)
216 3fho_A ATP-dependent RNA helic 96.3 0.014 4.7E-07 54.4 9.1 43 109-151 257-301 (508)
217 3ber_A Probable ATP-dependent 96.3 0.015 5E-07 48.6 8.5 41 109-149 184-225 (249)
218 2pt7_A CAG-ALFA; ATPase, prote 96.3 0.038 1.3E-06 48.2 11.4 37 33-71 160-196 (330)
219 3uie_A Adenylyl-sulfate kinase 96.3 0.0041 1.4E-07 50.1 4.8 23 49-71 28-50 (200)
220 1s2m_A Putative ATP-dependent 96.3 0.05 1.7E-06 48.5 12.4 40 109-148 161-201 (400)
221 1knq_A Gluconate kinase; ALFA/ 96.3 0.0036 1.2E-07 49.2 4.2 22 49-70 11-32 (175)
222 3ly5_A ATP-dependent RNA helic 96.3 0.012 4.1E-07 49.6 7.8 41 109-149 199-240 (262)
223 1zak_A Adenylate kinase; ATP:A 96.3 0.0022 7.4E-08 52.7 3.0 23 48-70 7-29 (222)
224 1zp6_A Hypothetical protein AT 96.3 0.0024 8.2E-08 50.9 3.2 22 49-70 12-33 (191)
225 1kgd_A CASK, peripheral plasma 96.2 0.003 1E-07 50.0 3.6 22 49-70 8-29 (180)
226 3eiq_A Eukaryotic initiation f 96.2 0.019 6.5E-07 51.5 9.3 41 110-150 182-223 (414)
227 3t1o_A Gliding protein MGLA; G 96.2 0.013 4.5E-07 46.4 7.4 22 49-70 17-38 (198)
228 2pl3_A Probable ATP-dependent 96.2 0.024 8.3E-07 46.7 9.2 41 109-149 169-210 (236)
229 2plr_A DTMP kinase, probable t 96.2 0.003 1E-07 51.1 3.5 24 49-72 7-30 (213)
230 3crm_A TRNA delta(2)-isopenten 96.2 0.0037 1.3E-07 54.3 4.1 31 48-83 7-37 (323)
231 1fuu_A Yeast initiation factor 96.2 0.031 1.1E-06 49.6 10.5 42 110-151 161-203 (394)
232 1e4v_A Adenylate kinase; trans 96.2 0.0037 1.3E-07 51.0 3.9 22 49-70 3-24 (214)
233 2qor_A Guanylate kinase; phosp 96.2 0.003 1E-07 51.1 3.3 22 49-70 15-36 (204)
234 2xb4_A Adenylate kinase; ATP-b 96.2 0.0043 1.5E-07 51.0 4.3 22 49-70 3-24 (223)
235 2jaq_A Deoxyguanosine kinase; 96.2 0.004 1.4E-07 50.1 4.1 23 48-70 2-24 (205)
236 4dkx_A RAS-related protein RAB 96.1 0.02 6.9E-07 46.7 8.3 23 49-71 16-38 (216)
237 2yvu_A Probable adenylyl-sulfa 96.1 0.0028 9.5E-08 50.4 3.0 24 49-72 16-39 (186)
238 1wp9_A ATP-dependent RNA helic 96.1 0.022 7.5E-07 52.0 9.5 37 30-70 11-47 (494)
239 2j0s_A ATP-dependent RNA helic 96.1 0.034 1.1E-06 49.9 10.5 41 110-150 178-219 (410)
240 3cmw_A Protein RECA, recombina 96.1 0.015 5.1E-07 61.1 8.9 68 49-124 735-823 (1706)
241 1wms_A RAB-9, RAB9, RAS-relate 96.1 0.031 1.1E-06 43.4 9.0 22 49-70 10-31 (177)
242 3nwj_A ATSK2; P loop, shikimat 96.1 0.0056 1.9E-07 51.3 4.6 43 32-81 33-78 (250)
243 3d31_A Sulfate/molybdate ABC t 96.1 0.015 5.2E-07 51.1 7.5 42 110-151 144-188 (348)
244 1cke_A CK, MSSA, protein (cyti 96.1 0.0051 1.7E-07 50.5 4.3 23 48-70 7-29 (227)
245 2fwr_A DNA repair protein RAD2 96.0 0.032 1.1E-06 51.2 9.9 39 29-70 94-132 (472)
246 2hf9_A Probable hydrogenase ni 96.0 0.011 3.6E-07 48.4 6.1 43 30-72 22-64 (226)
247 2eyq_A TRCF, transcription-rep 96.0 0.093 3.2E-06 53.7 14.1 40 29-68 607-646 (1151)
248 3nh6_A ATP-binding cassette SU 96.0 0.028 9.6E-07 48.5 8.9 41 111-151 208-249 (306)
249 4b3f_X DNA-binding protein smu 96.0 0.009 3.1E-07 57.4 6.4 41 30-72 191-231 (646)
250 1ex7_A Guanylate kinase; subst 96.0 0.004 1.4E-07 49.6 3.3 22 49-70 4-25 (186)
251 4gzl_A RAS-related C3 botulinu 96.0 0.0058 2E-07 49.3 4.2 42 30-71 14-55 (204)
252 1z0j_A RAB-22, RAS-related pro 96.0 0.022 7.4E-07 43.9 7.5 22 49-70 9-30 (170)
253 2wsm_A Hydrogenase expression/ 96.0 0.0045 1.5E-07 50.5 3.6 45 27-71 11-55 (221)
254 2v6i_A RNA helicase; membrane, 96.0 0.037 1.2E-06 50.3 9.9 20 48-67 4-24 (431)
255 2z0m_A 337AA long hypothetical 96.0 0.031 1E-06 48.5 9.2 23 48-70 33-55 (337)
256 2v3c_C SRP54, signal recogniti 96.0 0.0088 3E-07 54.3 5.7 23 49-71 102-124 (432)
257 1rz3_A Hypothetical protein rb 95.9 0.01 3.6E-07 47.7 5.6 40 32-71 5-47 (201)
258 3foz_A TRNA delta(2)-isopenten 95.9 0.007 2.4E-07 52.0 4.7 22 49-70 13-34 (316)
259 1xjc_A MOBB protein homolog; s 95.9 0.0066 2.3E-07 47.5 4.1 36 46-81 4-39 (169)
260 2pbr_A DTMP kinase, thymidylat 95.9 0.0049 1.7E-07 49.1 3.5 33 49-83 3-35 (195)
261 2yyz_A Sugar ABC transporter, 95.9 0.012 4.1E-07 52.0 6.2 42 110-151 150-194 (359)
262 2z0h_A DTMP kinase, thymidylat 95.9 0.0049 1.7E-07 49.3 3.5 24 49-72 3-26 (197)
263 3tau_A Guanylate kinase, GMP k 95.9 0.0041 1.4E-07 50.5 3.0 23 49-71 11-33 (208)
264 3clv_A RAB5 protein, putative; 95.9 0.026 9E-07 44.8 7.9 23 48-70 9-31 (208)
265 3c8u_A Fructokinase; YP_612366 95.9 0.0073 2.5E-07 48.9 4.5 23 49-71 25-47 (208)
266 2r6a_A DNAB helicase, replicat 95.9 0.094 3.2E-06 47.9 12.3 23 49-71 206-228 (454)
267 1kao_A RAP2A; GTP-binding prot 95.9 0.088 3E-06 40.1 10.5 22 49-70 6-27 (167)
268 2hup_A RAS-related protein RAB 95.9 0.078 2.7E-06 42.3 10.5 22 49-70 32-53 (201)
269 2wwf_A Thymidilate kinase, put 95.8 0.0044 1.5E-07 50.2 3.0 24 49-72 13-36 (212)
270 3tui_C Methionine import ATP-b 95.8 0.035 1.2E-06 49.0 8.9 42 110-151 180-224 (366)
271 2ged_A SR-beta, signal recogni 95.8 0.21 7.1E-06 39.3 12.9 24 47-70 49-72 (193)
272 1v43_A Sugar-binding transport 95.8 0.014 4.8E-07 51.8 6.4 42 110-151 158-202 (372)
273 1z0f_A RAB14, member RAS oncog 95.8 0.041 1.4E-06 42.7 8.5 23 48-70 17-39 (179)
274 1uj2_A Uridine-cytidine kinase 95.8 0.0073 2.5E-07 50.6 4.4 23 48-70 24-46 (252)
275 2oca_A DAR protein, ATP-depend 95.8 0.038 1.3E-06 51.2 9.7 38 30-70 115-152 (510)
276 3fe2_A Probable ATP-dependent 95.8 0.04 1.4E-06 45.6 8.8 42 109-150 174-216 (242)
277 3r20_A Cytidylate kinase; stru 95.8 0.0078 2.7E-07 49.8 4.3 23 48-70 11-33 (233)
278 2if2_A Dephospho-COA kinase; a 95.8 0.0049 1.7E-07 49.7 3.0 22 48-70 3-24 (204)
279 3bc1_A RAS-related protein RAB 95.8 0.032 1.1E-06 43.9 7.9 22 49-70 14-35 (195)
280 2bbw_A Adenylate kinase 4, AK4 95.8 0.0057 2E-07 51.0 3.5 23 48-70 29-51 (246)
281 3a8t_A Adenylate isopentenyltr 95.8 0.0053 1.8E-07 53.5 3.3 24 48-71 42-65 (339)
282 1z2a_A RAS-related protein RAB 95.8 0.018 6.2E-07 44.2 6.2 24 48-71 7-30 (168)
283 3rlf_A Maltose/maltodextrin im 95.8 0.053 1.8E-06 48.2 9.8 41 111-151 151-194 (381)
284 3dz8_A RAS-related protein RAB 95.8 0.029 9.9E-07 44.4 7.6 24 48-71 25-48 (191)
285 2px0_A Flagellar biosynthesis 95.8 0.024 8.3E-07 48.7 7.5 23 49-71 108-130 (296)
286 2q6t_A DNAB replication FORK h 95.8 0.096 3.3E-06 47.7 11.8 48 36-85 189-238 (444)
287 1nn5_A Similar to deoxythymidy 95.7 0.0051 1.7E-07 49.9 3.0 25 48-72 11-35 (215)
288 1ls1_A Signal recognition part 95.7 0.042 1.4E-06 47.1 8.9 25 49-73 101-125 (295)
289 3ake_A Cytidylate kinase; CMP 95.7 0.009 3.1E-07 48.1 4.4 23 48-70 4-26 (208)
290 2grj_A Dephospho-COA kinase; T 95.7 0.0071 2.4E-07 48.4 3.7 28 49-81 15-42 (192)
291 2v54_A DTMP kinase, thymidylat 95.7 0.0053 1.8E-07 49.4 3.0 23 48-70 6-28 (204)
292 1odf_A YGR205W, hypothetical 3 95.7 0.015 5.3E-07 49.7 5.9 23 49-71 34-56 (290)
293 2dyk_A GTP-binding protein; GT 95.7 0.068 2.3E-06 40.6 9.2 24 47-70 2-25 (161)
294 2xgj_A ATP-dependent RNA helic 95.7 0.075 2.6E-06 53.6 11.6 53 13-68 69-123 (1010)
295 1u8z_A RAS-related protein RAL 95.7 0.041 1.4E-06 42.0 7.9 22 49-70 7-28 (168)
296 1sky_E F1-ATPase, F1-ATP synth 95.7 0.0063 2.2E-07 55.4 3.5 36 33-71 141-176 (473)
297 1m7g_A Adenylylsulfate kinase; 95.7 0.013 4.6E-07 47.5 5.2 24 48-71 27-50 (211)
298 2bdt_A BH3686; alpha-beta prot 95.7 0.0065 2.2E-07 48.3 3.2 22 49-70 5-26 (189)
299 2j41_A Guanylate kinase; GMP, 95.7 0.0057 1.9E-07 49.3 2.9 22 49-70 9-30 (207)
300 2pez_A Bifunctional 3'-phospho 95.6 0.0079 2.7E-07 47.4 3.6 23 49-71 8-30 (179)
301 3con_A GTPase NRAS; structural 95.6 0.035 1.2E-06 43.8 7.5 22 49-70 24-45 (190)
302 2xxa_A Signal recognition part 95.6 0.12 4E-06 46.9 11.7 25 49-73 103-127 (433)
303 2z43_A DNA repair and recombin 95.6 0.02 7E-07 49.8 6.5 38 49-86 110-151 (324)
304 1np6_A Molybdopterin-guanine d 95.6 0.012 3.9E-07 46.4 4.4 38 46-83 6-43 (174)
305 3tr0_A Guanylate kinase, GMP k 95.6 0.0072 2.5E-07 48.6 3.3 22 49-70 10-31 (205)
306 4a74_A DNA repair and recombin 95.6 0.022 7.4E-07 46.6 6.3 23 49-71 28-50 (231)
307 2z83_A Helicase/nucleoside tri 95.6 0.027 9.4E-07 51.6 7.5 23 48-70 23-46 (459)
308 3ney_A 55 kDa erythrocyte memb 95.6 0.0078 2.7E-07 48.4 3.3 22 49-70 22-43 (197)
309 1mh1_A RAC1; GTP-binding, GTPa 95.6 0.022 7.4E-07 44.7 6.0 22 49-70 8-29 (186)
310 1jjv_A Dephospho-COA kinase; P 95.6 0.0088 3E-07 48.3 3.7 20 49-68 5-24 (206)
311 1tq4_A IIGP1, interferon-induc 95.5 0.0093 3.2E-07 53.7 4.0 58 13-70 18-93 (413)
312 3a00_A Guanylate kinase, GMP k 95.5 0.0081 2.8E-07 47.8 3.2 23 49-71 4-26 (186)
313 3d3q_A TRNA delta(2)-isopenten 95.5 0.01 3.5E-07 51.9 4.0 23 48-70 9-31 (340)
314 1lvg_A Guanylate kinase, GMP k 95.5 0.0093 3.2E-07 48.0 3.5 22 49-70 7-28 (198)
315 3llu_A RAS-related GTP-binding 95.5 0.091 3.1E-06 41.7 9.5 23 48-70 22-44 (196)
316 2fh5_B SR-beta, signal recogni 95.5 0.11 3.6E-06 41.8 10.0 25 47-71 8-32 (214)
317 1r2q_A RAS-related protein RAB 95.5 0.054 1.9E-06 41.5 7.9 22 49-70 9-30 (170)
318 4e22_A Cytidylate kinase; P-lo 95.4 0.012 4E-07 49.3 4.2 23 48-70 29-51 (252)
319 2bov_A RAla, RAS-related prote 95.4 0.057 1.9E-06 43.1 8.2 23 48-70 16-38 (206)
320 1p9r_A General secretion pathw 95.4 0.036 1.2E-06 50.0 7.6 51 22-73 144-194 (418)
321 1z63_A Helicase of the SNF2/RA 95.4 0.045 1.5E-06 50.6 8.5 102 48-152 58-189 (500)
322 3p32_A Probable GTPase RV1496/ 95.4 0.024 8.1E-07 50.1 6.2 38 45-82 78-115 (355)
323 1ek0_A Protein (GTP-binding pr 95.4 0.054 1.8E-06 41.5 7.7 22 49-70 6-27 (170)
324 2efe_B Small GTP-binding prote 95.4 0.061 2.1E-06 41.8 8.1 22 49-70 15-36 (181)
325 3q3j_B RHO-related GTP-binding 95.4 0.025 8.6E-07 45.9 5.9 22 49-70 30-51 (214)
326 3lda_A DNA repair protein RAD5 95.4 0.024 8.3E-07 50.8 6.2 39 49-87 181-223 (400)
327 4a1f_A DNAB helicase, replicat 95.3 0.13 4.4E-06 44.9 10.6 34 49-84 49-82 (338)
328 3pqc_A Probable GTP-binding pr 95.3 0.094 3.2E-06 41.2 9.1 24 47-70 24-47 (195)
329 1zj6_A ADP-ribosylation factor 95.3 0.081 2.8E-06 41.5 8.6 26 44-69 14-39 (187)
330 2i1q_A DNA repair and recombin 95.3 0.027 9.4E-07 48.9 6.2 22 49-70 101-122 (322)
331 2ce2_X GTPase HRAS; signaling 95.3 0.04 1.4E-06 42.0 6.6 23 49-71 6-28 (166)
332 2a9k_A RAS-related protein RAL 95.3 0.057 2E-06 42.1 7.6 22 49-70 21-42 (187)
333 3bgw_A DNAB-like replicative h 95.3 0.12 4.2E-06 47.0 10.7 47 36-85 186-234 (444)
334 1gtv_A TMK, thymidylate kinase 95.3 0.0051 1.8E-07 49.9 1.4 23 49-71 3-25 (214)
335 1z06_A RAS-related protein RAB 95.3 0.065 2.2E-06 42.2 7.9 23 48-70 22-44 (189)
336 1m7b_A RND3/RHOE small GTP-bin 95.2 0.02 6.8E-07 45.1 4.7 22 49-70 10-31 (184)
337 1vht_A Dephospho-COA kinase; s 95.2 0.016 5.4E-07 47.2 4.1 21 49-70 7-27 (218)
338 1q57_A DNA primase/helicase; d 95.2 0.17 5.8E-06 46.9 11.5 35 49-84 245-279 (503)
339 3ld9_A DTMP kinase, thymidylat 95.2 0.018 6.3E-07 47.2 4.4 38 35-72 10-47 (223)
340 3tkl_A RAS-related protein RAB 95.2 0.057 1.9E-06 42.7 7.3 23 49-71 19-41 (196)
341 3qf4_B Uncharacterized ABC tra 95.2 0.02 6.8E-07 54.4 5.2 43 110-152 508-551 (598)
342 4gp7_A Metallophosphoesterase; 95.2 0.011 3.8E-07 46.3 2.9 17 49-65 12-28 (171)
343 2ew1_A RAS-related protein RAB 95.1 0.043 1.5E-06 44.0 6.6 24 48-71 28-51 (201)
344 2bme_A RAB4A, RAS-related prot 95.1 0.049 1.7E-06 42.7 6.7 23 49-71 13-35 (186)
345 2qmh_A HPR kinase/phosphorylas 95.1 0.0085 2.9E-07 48.0 2.1 22 49-70 37-58 (205)
346 3tw8_B RAS-related protein RAB 95.1 0.013 4.6E-07 45.6 3.3 22 48-69 11-32 (181)
347 1zbd_A Rabphilin-3A; G protein 95.1 0.068 2.3E-06 42.6 7.6 22 49-70 11-32 (203)
348 1svi_A GTP-binding protein YSX 95.1 0.2 7E-06 39.3 10.5 24 46-69 23-46 (195)
349 1r8s_A ADP-ribosylation factor 95.1 0.24 8.2E-06 37.6 10.5 24 48-71 2-25 (164)
350 1bif_A 6-phosphofructo-2-kinas 95.1 0.12 4.1E-06 47.4 10.1 23 49-71 42-64 (469)
351 3reg_A RHO-like small GTPase; 95.1 0.026 8.7E-07 44.8 4.9 23 49-71 26-48 (194)
352 1j8m_F SRP54, signal recogniti 95.1 0.11 3.9E-06 44.5 9.2 25 49-73 101-125 (297)
353 3qf4_A ABC transporter, ATP-bi 95.0 0.098 3.4E-06 49.5 9.6 41 111-151 497-538 (587)
354 4dsu_A GTPase KRAS, isoform 2B 95.0 0.065 2.2E-06 41.9 7.3 23 49-71 7-29 (189)
355 1gwn_A RHO-related GTP-binding 95.0 0.024 8.2E-07 45.7 4.8 23 49-71 31-53 (205)
356 2fg5_A RAB-22B, RAS-related pr 95.0 0.073 2.5E-06 42.1 7.6 22 49-70 26-47 (192)
357 1htw_A HI0065; nucleotide-bind 95.0 0.016 5.3E-07 44.9 3.4 22 49-70 36-57 (158)
358 3l9o_A ATP-dependent RNA helic 95.0 0.076 2.6E-06 54.1 9.3 40 111-150 290-330 (1108)
359 4eaq_A DTMP kinase, thymidylat 95.0 0.015 5.2E-07 47.9 3.5 24 49-72 29-52 (229)
360 3b85_A Phosphate starvation-in 95.0 0.02 6.8E-07 46.5 4.2 42 18-69 4-45 (208)
361 3lxw_A GTPase IMAP family memb 95.0 0.19 6.4E-06 41.8 10.3 21 49-69 24-44 (247)
362 3lxx_A GTPase IMAP family memb 95.0 0.15 5.3E-06 41.9 9.8 23 48-70 31-53 (239)
363 1ky3_A GTP-binding protein YPT 95.0 0.045 1.5E-06 42.6 6.2 23 48-70 10-32 (182)
364 2h92_A Cytidylate kinase; ross 95.0 0.02 6.9E-07 46.6 4.2 22 49-70 6-27 (219)
365 1s96_A Guanylate kinase, GMP k 95.0 0.015 5.2E-07 47.6 3.3 23 49-71 19-41 (219)
366 2f7s_A C25KG, RAS-related prot 95.0 0.12 4.1E-06 41.7 8.8 21 49-69 28-48 (217)
367 1zd9_A ADP-ribosylation factor 94.9 0.13 4.6E-06 40.3 8.9 22 49-70 25-46 (188)
368 2gj8_A MNME, tRNA modification 94.9 0.1 3.5E-06 40.5 8.0 21 49-69 7-27 (172)
369 4edh_A DTMP kinase, thymidylat 94.9 0.038 1.3E-06 44.9 5.6 25 49-73 9-33 (213)
370 1uf9_A TT1252 protein; P-loop, 94.9 0.016 5.3E-07 46.5 3.2 21 49-69 11-31 (203)
371 1z6g_A Guanylate kinase; struc 94.9 0.016 5.4E-07 47.4 3.3 22 49-70 26-47 (218)
372 3asz_A Uridine kinase; cytidin 94.9 0.014 4.8E-07 47.2 3.0 22 49-70 9-30 (211)
373 2ffh_A Protein (FFH); SRP54, s 94.9 0.23 7.8E-06 44.8 11.0 26 49-74 101-126 (425)
374 2il1_A RAB12; G-protein, GDP, 94.9 0.052 1.8E-06 43.0 6.2 21 49-69 29-49 (192)
375 3kkq_A RAS-related protein M-R 94.8 0.055 1.9E-06 42.3 6.2 23 49-71 21-43 (183)
376 1c1y_A RAS-related protein RAP 94.8 0.055 1.9E-06 41.4 6.1 22 49-70 6-27 (167)
377 1h65_A Chloroplast outer envel 94.8 0.26 8.8E-06 41.5 10.8 22 49-70 42-63 (270)
378 1q3t_A Cytidylate kinase; nucl 94.8 0.031 1.1E-06 46.1 4.9 22 49-70 19-40 (236)
379 3lv8_A DTMP kinase, thymidylat 94.8 0.028 9.5E-07 46.5 4.5 25 49-73 30-54 (236)
380 2p5s_A RAS and EF-hand domain 94.8 0.062 2.1E-06 42.8 6.6 23 48-70 30-52 (199)
381 2g6b_A RAS-related protein RAB 94.8 0.062 2.1E-06 41.8 6.4 23 49-71 13-35 (180)
382 4a82_A Cystic fibrosis transme 94.8 0.08 2.7E-06 50.0 8.2 43 111-153 495-538 (578)
383 4dhe_A Probable GTP-binding pr 94.8 0.26 9E-06 39.7 10.5 25 45-69 28-52 (223)
384 2zj8_A DNA helicase, putative 94.8 0.053 1.8E-06 52.7 7.1 23 48-70 41-64 (720)
385 2atx_A Small GTP binding prote 94.7 0.032 1.1E-06 44.2 4.7 22 49-70 21-42 (194)
386 3b5x_A Lipid A export ATP-bind 94.7 0.087 3E-06 49.8 8.4 43 110-152 497-540 (582)
387 1znw_A Guanylate kinase, GMP k 94.7 0.019 6.3E-07 46.5 3.3 22 49-70 23-44 (207)
388 4tmk_A Protein (thymidylate ki 94.7 0.031 1.1E-06 45.4 4.6 26 49-74 6-31 (213)
389 1g8f_A Sulfate adenylyltransfe 94.7 0.031 1.1E-06 51.7 5.1 44 29-72 376-421 (511)
390 1gm5_A RECG; helicase, replica 94.7 0.16 5.4E-06 49.7 10.3 41 29-69 372-412 (780)
391 2f1r_A Molybdopterin-guanine d 94.7 0.013 4.5E-07 45.9 2.2 39 48-86 4-42 (171)
392 2f6r_A COA synthase, bifunctio 94.7 0.017 5.8E-07 49.2 3.1 21 49-70 78-98 (281)
393 2ehv_A Hypothetical protein PH 94.7 0.017 5.9E-07 47.9 3.1 20 49-68 33-52 (251)
394 2qt1_A Nicotinamide riboside k 94.7 0.012 4E-07 47.6 1.9 22 49-70 24-45 (207)
395 1g16_A RAS-related protein SEC 94.7 0.058 2E-06 41.4 6.0 23 48-70 5-27 (170)
396 3tqc_A Pantothenate kinase; bi 94.7 0.066 2.3E-06 46.4 6.8 23 49-71 95-117 (321)
397 2j1l_A RHO-related GTP-binding 94.7 0.041 1.4E-06 44.5 5.3 21 49-69 37-57 (214)
398 3q72_A GTP-binding protein RAD 94.7 0.043 1.5E-06 42.0 5.2 21 48-68 4-24 (166)
399 2erx_A GTP-binding protein DI- 94.6 0.055 1.9E-06 41.6 5.6 22 48-69 5-26 (172)
400 3bwd_D RAC-like GTP-binding pr 94.6 0.031 1.1E-06 43.6 4.2 23 48-70 10-32 (182)
401 3e70_C DPA, signal recognition 94.6 0.072 2.5E-06 46.4 6.9 25 49-73 132-156 (328)
402 2a5j_A RAS-related protein RAB 94.6 0.07 2.4E-06 42.1 6.4 22 49-70 24-45 (191)
403 2oap_1 GSPE-2, type II secreti 94.6 0.027 9.3E-07 52.3 4.3 40 30-71 246-285 (511)
404 3q85_A GTP-binding protein REM 94.6 0.062 2.1E-06 41.2 5.9 21 48-68 4-24 (169)
405 2y8e_A RAB-protein 6, GH09086P 94.5 0.069 2.4E-06 41.3 6.2 22 49-70 17-38 (179)
406 3eph_A TRNA isopentenyltransfe 94.5 0.023 7.9E-07 50.7 3.6 23 49-71 5-27 (409)
407 3tbk_A RIG-I helicase domain; 94.5 0.27 9.2E-06 45.7 11.2 35 33-70 9-43 (555)
408 3cph_A RAS-related protein SEC 94.5 0.093 3.2E-06 42.1 7.0 23 48-70 22-44 (213)
409 2va8_A SSO2462, SKI2-type heli 94.5 0.22 7.6E-06 48.2 10.8 20 48-67 48-67 (715)
410 2zts_A Putative uncharacterize 94.5 0.01 3.5E-07 49.2 1.2 21 49-69 33-53 (251)
411 1rj9_A FTSY, signal recognitio 94.5 0.063 2.2E-06 46.2 6.2 25 49-73 105-129 (304)
412 4a4z_A Antiviral helicase SKI2 94.5 0.12 4.2E-06 52.0 9.1 41 110-150 146-187 (997)
413 2whx_A Serine protease/ntpase/ 94.5 0.16 5.3E-06 48.4 9.4 40 109-148 275-315 (618)
414 4a2p_A RIG-I, retinoic acid in 94.5 0.25 8.4E-06 46.0 10.8 35 33-70 12-46 (556)
415 1wrb_A DJVLGB; RNA helicase, D 94.5 0.2 7E-06 41.5 9.2 31 31-64 48-78 (253)
416 2zpa_A Uncharacterized protein 94.4 0.21 7.1E-06 47.6 10.0 92 32-132 179-276 (671)
417 2j0v_A RAC-like GTP-binding pr 94.4 0.037 1.3E-06 44.6 4.4 22 49-70 12-33 (212)
418 2p6r_A Afuhel308 helicase; pro 94.4 0.23 7.9E-06 48.0 10.6 41 110-150 137-181 (702)
419 3tqf_A HPR(Ser) kinase; transf 94.4 0.022 7.6E-07 44.4 2.7 21 49-69 19-39 (181)
420 3dmq_A RNA polymerase-associat 94.3 0.1 3.4E-06 52.5 8.2 56 29-85 154-209 (968)
421 2v9p_A Replication protein E1; 94.3 0.037 1.3E-06 47.6 4.4 22 49-70 129-150 (305)
422 2gk6_A Regulator of nonsense t 94.3 0.043 1.5E-06 52.4 5.2 39 30-71 182-220 (624)
423 2gco_A H9, RHO-related GTP-bin 94.3 0.055 1.9E-06 43.2 5.1 22 49-70 28-49 (201)
424 2jeo_A Uridine-cytidine kinase 94.3 0.028 9.7E-07 46.7 3.5 22 49-70 28-49 (245)
425 3fdi_A Uncharacterized protein 94.2 0.031 1.1E-06 45.0 3.5 29 48-81 8-36 (201)
426 3gmt_A Adenylate kinase; ssgci 94.2 0.035 1.2E-06 45.6 3.8 22 49-70 11-32 (230)
427 1x3s_A RAS-related protein RAB 94.2 0.076 2.6E-06 41.8 5.8 22 49-70 18-39 (195)
428 2gf0_A GTP-binding protein DI- 94.2 0.1 3.5E-06 41.2 6.6 23 48-70 10-32 (199)
429 2yc2_C IFT27, small RAB-relate 94.2 0.051 1.8E-06 43.4 4.8 21 49-69 23-43 (208)
430 2fu5_C RAS-related protein RAB 94.2 0.047 1.6E-06 42.7 4.4 22 49-70 11-32 (183)
431 2jlq_A Serine protease subunit 94.2 0.22 7.5E-06 45.4 9.4 21 48-68 21-42 (451)
432 3lnc_A Guanylate kinase, GMP k 94.1 0.017 5.9E-07 47.5 1.8 22 49-70 30-52 (231)
433 3tmk_A Thymidylate kinase; pho 94.1 0.097 3.3E-06 42.6 6.3 23 49-71 8-30 (216)
434 4f4c_A Multidrug resistance pr 94.1 0.046 1.6E-06 56.8 5.2 60 111-170 1235-1299(1321)
435 2oil_A CATX-8, RAS-related pro 94.1 0.038 1.3E-06 43.7 3.8 24 48-71 27-50 (193)
436 1tf7_A KAIC; homohexamer, hexa 94.1 0.1 3.4E-06 48.7 7.1 24 49-72 284-307 (525)
437 3i5x_A ATP-dependent RNA helic 94.1 0.37 1.3E-05 45.1 11.1 39 110-148 225-271 (563)
438 1nlf_A Regulatory protein REPA 94.0 0.027 9.3E-07 47.8 3.0 23 49-71 33-55 (279)
439 3ozx_A RNAse L inhibitor; ATP 94.0 0.21 7.3E-06 46.6 9.2 42 110-151 155-197 (538)
440 2qm8_A GTPase/ATPase; G protei 94.0 0.073 2.5E-06 46.6 5.7 23 49-71 58-80 (337)
441 3v9p_A DTMP kinase, thymidylat 94.0 0.026 8.8E-07 46.4 2.5 23 49-71 28-50 (227)
442 2w00_A HSDR, R.ECOR124I; ATP-b 94.0 0.36 1.2E-05 48.7 11.2 24 48-71 302-325 (1038)
443 2p67_A LAO/AO transport system 93.9 0.077 2.6E-06 46.5 5.7 24 48-71 58-81 (341)
444 3aez_A Pantothenate kinase; tr 93.9 0.036 1.2E-06 48.0 3.5 24 49-72 93-116 (312)
445 2bcg_Y Protein YP2, GTP-bindin 93.9 0.081 2.8E-06 42.3 5.5 23 48-70 10-32 (206)
446 3o8b_A HCV NS3 protease/helica 93.9 0.32 1.1E-05 46.5 10.1 42 109-150 316-360 (666)
447 4f4c_A Multidrug resistance pr 93.9 0.19 6.5E-06 52.3 9.3 24 48-71 446-469 (1321)
448 1ewq_A DNA mismatch repair pro 93.9 0.3 1E-05 47.6 10.1 22 49-70 579-600 (765)
449 3hjn_A DTMP kinase, thymidylat 93.9 0.056 1.9E-06 43.4 4.3 26 49-74 3-28 (197)
450 2ocp_A DGK, deoxyguanosine kin 93.8 0.032 1.1E-06 46.2 2.8 23 49-71 5-27 (241)
451 2www_A Methylmalonic aciduria 93.8 0.1 3.5E-06 45.9 6.2 25 47-71 75-99 (349)
452 2o52_A RAS-related protein RAB 93.7 0.093 3.2E-06 41.8 5.5 22 48-69 27-48 (200)
453 1sq5_A Pantothenate kinase; P- 93.7 0.049 1.7E-06 47.0 4.0 23 49-71 83-105 (308)
454 2wjy_A Regulator of nonsense t 93.7 0.077 2.6E-06 52.1 5.8 40 30-72 358-397 (800)
455 2gza_A Type IV secretion syste 93.7 0.059 2E-06 47.7 4.6 35 35-71 166-200 (361)
456 2gks_A Bifunctional SAT/APS ki 93.7 0.059 2E-06 50.5 4.7 43 30-72 354-398 (546)
457 1pui_A ENGB, probable GTP-bind 93.6 0.12 4.1E-06 41.4 6.0 22 48-69 28-49 (210)
458 1cr0_A DNA primase/helicase; R 93.6 0.036 1.2E-06 47.5 3.0 23 49-71 38-60 (296)
459 3kta_A Chromosome segregation 93.6 0.039 1.3E-06 43.3 2.9 23 49-71 29-51 (182)
460 1yks_A Genome polyprotein [con 93.6 0.1 3.5E-06 47.4 6.1 22 48-69 10-32 (440)
461 2ewv_A Twitching motility prot 93.6 0.043 1.5E-06 48.7 3.5 23 49-71 139-161 (372)
462 2wv9_A Flavivirin protease NS2 93.6 0.28 9.7E-06 47.1 9.3 22 48-69 243-265 (673)
463 2f9l_A RAB11B, member RAS onco 93.6 0.043 1.5E-06 43.8 3.2 22 49-70 8-29 (199)
464 3b9q_A Chloroplast SRP recepto 93.5 0.047 1.6E-06 47.0 3.5 24 49-72 103-126 (302)
465 3sqw_A ATP-dependent RNA helic 93.5 0.46 1.6E-05 44.7 10.7 39 110-148 174-220 (579)
466 1yrb_A ATP(GTP)binding protein 93.5 0.092 3.2E-06 43.8 5.2 34 49-83 17-50 (262)
467 3thx_A DNA mismatch repair pro 93.5 0.33 1.1E-05 48.4 9.8 20 49-68 665-684 (934)
468 1f2t_A RAD50 ABC-ATPase; DNA d 93.5 0.064 2.2E-06 40.9 3.8 24 49-72 26-49 (149)
469 3thx_B DNA mismatch repair pro 93.5 0.38 1.3E-05 47.8 10.2 20 49-68 676-695 (918)
470 1wf3_A GTP-binding protein; GT 93.5 1.1 3.7E-05 38.4 12.0 133 49-184 10-169 (301)
471 1c9k_A COBU, adenosylcobinamid 93.4 0.04 1.4E-06 43.4 2.6 21 49-69 2-22 (180)
472 2onk_A Molybdate/tungstate ABC 93.4 0.046 1.6E-06 45.4 3.1 24 48-71 26-49 (240)
473 1oix_A RAS-related protein RAB 93.4 0.041 1.4E-06 43.6 2.8 23 49-71 32-54 (191)
474 3tif_A Uncharacterized ABC tra 93.4 0.037 1.3E-06 45.8 2.5 22 49-70 34-55 (235)
475 4a2q_A RIG-I, retinoic acid in 93.4 0.51 1.8E-05 46.3 11.1 37 31-70 251-287 (797)
476 3r7w_A Gtpase1, GTP-binding pr 93.4 0.53 1.8E-05 40.4 10.0 21 49-69 6-26 (307)
477 1m8p_A Sulfate adenylyltransfe 93.4 0.058 2E-06 50.8 4.1 23 49-71 399-421 (573)
478 1a7j_A Phosphoribulokinase; tr 93.3 0.029 1E-06 48.0 1.9 22 49-70 8-29 (290)
479 3b60_A Lipid A export ATP-bind 93.3 0.31 1.1E-05 46.0 9.1 42 111-152 498-540 (582)
480 3gj0_A GTP-binding nuclear pro 93.3 0.041 1.4E-06 44.7 2.6 20 49-68 18-37 (221)
481 2db3_A ATP-dependent RNA helic 93.3 0.37 1.3E-05 43.6 9.2 16 48-63 95-110 (434)
482 1p5z_B DCK, deoxycytidine kina 93.3 0.02 6.8E-07 48.2 0.7 23 48-70 26-48 (263)
483 1x6v_B Bifunctional 3'-phospho 93.3 0.051 1.8E-06 51.5 3.6 23 49-71 55-77 (630)
484 3cr8_A Sulfate adenylyltranfer 93.2 0.068 2.3E-06 50.0 4.2 23 49-71 372-394 (552)
485 3th5_A RAS-related C3 botulinu 92.3 0.016 5.5E-07 46.5 0.0 22 48-69 32-53 (204)
486 2zej_A Dardarin, leucine-rich 93.2 0.043 1.5E-06 43.1 2.5 20 49-68 5-24 (184)
487 4hlc_A DTMP kinase, thymidylat 93.2 0.063 2.2E-06 43.3 3.5 23 49-71 5-27 (205)
488 4a2w_A RIG-I, retinoic acid in 93.2 0.8 2.7E-05 45.8 12.2 38 31-71 251-288 (936)
489 2cbz_A Multidrug resistance-as 93.1 0.043 1.5E-06 45.4 2.5 43 111-153 145-191 (237)
490 2lkc_A Translation initiation 93.1 0.072 2.5E-06 41.2 3.8 23 47-69 9-31 (178)
491 3gee_A MNME, tRNA modification 93.1 0.23 7.9E-06 45.6 7.6 105 49-154 236-356 (476)
492 2wji_A Ferrous iron transport 93.1 0.055 1.9E-06 41.6 3.1 21 49-69 6-26 (165)
493 2nzj_A GTP-binding protein REM 93.1 0.056 1.9E-06 41.7 3.1 23 48-70 6-28 (175)
494 2axn_A 6-phosphofructo-2-kinas 93.1 0.056 1.9E-06 50.3 3.5 23 49-71 38-60 (520)
495 1sgw_A Putative ABC transporte 93.1 0.046 1.6E-06 44.5 2.6 23 49-71 38-60 (214)
496 3czq_A Putative polyphosphate 93.1 0.15 5E-06 43.6 5.8 37 37-73 76-113 (304)
497 3sop_A Neuronal-specific septi 93.1 0.054 1.9E-06 45.8 3.1 24 48-71 4-27 (270)
498 2pcj_A ABC transporter, lipopr 93.0 0.038 1.3E-06 45.3 2.1 22 49-70 33-54 (224)
499 4f92_B U5 small nuclear ribonu 93.0 0.15 5E-06 54.3 6.9 32 34-67 932-963 (1724)
500 3hdt_A Putative kinase; struct 93.0 0.067 2.3E-06 43.8 3.4 28 49-81 17-44 (223)
No 1
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=4.9e-49 Score=352.69 Aligned_cols=326 Identities=35% Similarity=0.625 Sum_probs=289.9
Q ss_pred CCCCCCCCCCCCCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceE
Q 020071 1 MASSSSSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVM 80 (331)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~ 80 (331)
|-+|+++......||.++|||+.|++++|+++++..|...+..|..||++|+||+|+|||++++.+++.+.|..+...+.
T Consensus 1 ~~~~~~~~~~~~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 80 (340)
T 1sxj_C 1 MSTSTEKRSKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVL 80 (340)
T ss_dssp -----------CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEE
T ss_pred CCCCCCCccccCCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEE
Confidence 55677777777899999999999999999999999999999999999999999999999999999999998876666788
Q ss_pred EeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhc
Q 020071 81 ELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQS 160 (331)
Q Consensus 81 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~s 160 (331)
++++++..+.+.+++.+..+......+ .++++++||||+|.++.+++++|++++|+|+.++++|+++|...++.++++|
T Consensus 81 ~~~~~~~~~~~~ir~~i~~~~~~~~~~-~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~s 159 (340)
T 1sxj_C 81 ELNASDDRGIDVVRNQIKDFASTRQIF-SKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLS 159 (340)
T ss_dssp EECTTSCCSHHHHHTHHHHHHHBCCSS-SCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred EEcCcccccHHHHHHHHHHHHhhcccC-CCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHh
Confidence 899888778888888877766432111 3568999999999999999999999999999999999999999999999999
Q ss_pred ccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCC-----ccchhhhhhhcCCC
Q 020071 161 RCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFR-----FVNQENVFKVCDQP 235 (331)
Q Consensus 161 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~-----~i~~~~v~~~~~~~ 235 (331)
||..+.|.|++.+++.+++..+++.+++.+++++++.+++.++|++|.+++.++.++.... .|+.+++.++++..
T Consensus 160 R~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~~~ 239 (340)
T 1sxj_C 160 QCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAP 239 (340)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTTCC
T ss_pred hceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHhCCC
Confidence 9999999999999999999999998999999999999999999999999999987753322 69999999999999
Q ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhcccC-hHhHHHHHHHHHHHHHHHhcCCCchHH
Q 020071 236 HPLHVKNMVRNVLEGKFDDACSGLKQLYD-LGYSPTDIITTLFRIIKNYEMA-EHLKLEFMKEAGFAHMRICDGVGSYLQ 313 (331)
Q Consensus 236 ~~~~i~~l~~~~~~~~~~~~~~~l~~l~~-~g~~~~~i~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~l~~~~~~~l~ 313 (331)
....++++++++.+++..+++.++.+++. .|+++.+|+..+.+.++.+.++ ...+.+++..+.+++++++.|+|+.++
T Consensus 240 ~~~~i~~l~~~i~~~~~~~al~~l~~l~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~ 319 (340)
T 1sxj_C 240 RPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYSISKGGNDQIQ 319 (340)
T ss_dssp CHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHhCCChHHH
Confidence 99999999999999999999999999998 9999999999999999887777 889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 020071 314 LCGLLAKLSIVRET 327 (331)
Q Consensus 314 l~~l~~~l~~~~~~ 327 (331)
|+.++++++++.+.
T Consensus 320 le~l~~~l~~~~~~ 333 (340)
T 1sxj_C 320 GSAVIGAIKASFEN 333 (340)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999987764
No 2
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=2.7e-46 Score=333.18 Aligned_cols=318 Identities=44% Similarity=0.725 Sum_probs=288.0
Q ss_pred CCCCCCCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCC
Q 020071 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASD 86 (331)
Q Consensus 7 ~~~~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (331)
.....+.||.++|+|.+|++++|+++.+..+..++..+..+|++|+||+|+|||++|+.+++.+.+..+...++.+++.+
T Consensus 7 ~~~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (327)
T 1iqp_A 7 EVKVLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 86 (327)
T ss_dssp HHHHTTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred hhcccCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc
Confidence 34556789999999999999999999999999999999998999999999999999999999987665556688888876
Q ss_pred CCChHhHHHHHHHHHhc-ccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhccccee
Q 020071 87 DRGIDVVRNKIKMFAQK-KVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIV 165 (331)
Q Consensus 87 ~~~~~~i~~~i~~~~~~-~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~~i 165 (331)
..+.+.+++.+..+... ++ ..++++++||||+|.++.+.+++|++++++++.++++|++++...++.+++.+||..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~--~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~ 164 (327)
T 1iqp_A 87 ERGINVIREKVKEFARTKPI--GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIF 164 (327)
T ss_dssp HHHHHTTHHHHHHHHHSCCG--GGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEE
T ss_pred cCchHHHHHHHHHHHhhCCc--CCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEE
Confidence 65556666666555432 22 1267899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCCccchhhhhhhcCCCCHHHHHHHHH
Q 020071 166 RFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR 245 (331)
Q Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~ 245 (331)
.|+|++.+++..++..++..+++.+++++++.+++.++||+|.+++.++.+......|+.+++.++.+...+..++++++
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~ 244 (327)
T 1iqp_A 165 RFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVASRARPEDIREMML 244 (327)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSEECHHHHHHHTTCCCHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998876667899999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcccChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 020071 246 NVLEGKFDDACSGLKQLY-DLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIV 324 (331)
Q Consensus 246 ~~~~~~~~~~~~~l~~l~-~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~ 324 (331)
++..++...++.++++++ ..|+++.+++..+.+.++.+.++...+.+++..+.++++++++|+|+.++|+.++++++++
T Consensus 245 ~~~~~~~~~~~~~~~~ll~~~g~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~lk~~~~~~~~le~l~~~l~~~ 324 (327)
T 1iqp_A 245 LALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEYNFRLVEGANEIIQLEALLAQFTLI 324 (327)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGGSSSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 999999999999999998 8999999999999998888778899999999999999999999999999999999999987
Q ss_pred Hh
Q 020071 325 RE 326 (331)
Q Consensus 325 ~~ 326 (331)
.+
T Consensus 325 ~~ 326 (327)
T 1iqp_A 325 GK 326 (327)
T ss_dssp HC
T ss_pred hc
Confidence 65
No 3
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=100.00 E-value=3.5e-46 Score=331.31 Aligned_cols=312 Identities=41% Similarity=0.699 Sum_probs=285.6
Q ss_pred CCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChH
Q 020071 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGID 91 (331)
Q Consensus 12 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (331)
..||.++|+|..|++++|+++.+..+.+++..+..+|++|+||+|+|||++|+.+++.+.+..+...++.+++++..+.+
T Consensus 4 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 83 (319)
T 2chq_A 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID 83 (319)
T ss_dssp --CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTT
T ss_pred cccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChH
Confidence 35899999999999999999999999999999998889999999999999999999999877666778899988776666
Q ss_pred hHHHHHHHHHh-cccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccceeeecCC
Q 020071 92 VVRNKIKMFAQ-KKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRL 170 (331)
Q Consensus 92 ~i~~~i~~~~~-~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~~i~~~~~ 170 (331)
.+++.+..+.. .++ ..++++++||||+|.++.+.+++|++++++++.++++|++++...++.+++++||..+.|.|+
T Consensus 84 ~~~~~~~~~~~~~~~--~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~ 161 (319)
T 2chq_A 84 VVRHKIKEFARTAPI--GGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPV 161 (319)
T ss_dssp TSSHHHHHHHHSCCS--SSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCC
T ss_pred HHHHHHHHHHhcCCC--CCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCC
Confidence 66666666552 222 135689999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCCccchhhhhhhcCCCCHHHHHHHHHHHHcC
Q 020071 171 SDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEG 250 (331)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~ 250 (331)
+.+++..++..++.++++.+++++++.++..++||+|.+.+.++.++...+.|+.+++.++++......++++++++..+
T Consensus 162 ~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~ 241 (319)
T 2chq_A 162 PKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTELIQTALKG 241 (319)
T ss_dssp CHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHSSSCBCHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999887666789999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhcccChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 020071 251 KFDDACSGLKQLYD-LGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVR 325 (331)
Q Consensus 251 ~~~~~~~~l~~l~~-~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~~ 325 (331)
+..+++.++.+++. .|+++.+++..+.+.++.+.++...+.+++..+.+++++++.|+++.++++.++++++++.
T Consensus 242 ~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~lk~~~~~~~~le~l~~~l~~~~ 317 (319)
T 2chq_A 242 NFMEARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDKLGEVDFRLTEGANERIQLDAYLAYLSTLA 317 (319)
T ss_dssp CHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCSCTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 99999999999997 9999999999999999887778888999999999999999999999999999999999764
No 4
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=9.6e-45 Score=322.61 Aligned_cols=314 Identities=61% Similarity=1.008 Sum_probs=284.0
Q ss_pred CCCCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCC
Q 020071 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRG 89 (331)
Q Consensus 10 ~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 89 (331)
....||.++|+|..|++++|++..++.+.+++..+..+|++|+||+|+|||++|+.+++.+.|+.+...++.+++.+..+
T Consensus 6 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 85 (323)
T 1sxj_B 6 SLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRG 85 (323)
T ss_dssp -CCCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCS
T ss_pred cccCcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccC
Confidence 34679999999999999999999999999999999988999999999999999999999987766566788899888777
Q ss_pred hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccceeeecC
Q 020071 90 IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSR 169 (331)
Q Consensus 90 ~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~~i~~~~ 169 (331)
.+.+++.+..+......+..+++++|||||+|.++...+++|++++++++.++++|++++...++.+++++||..+.|+|
T Consensus 86 ~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~ 165 (323)
T 1sxj_B 86 IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSK 165 (323)
T ss_dssp HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecC
Confidence 88888887777633222213458999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCCccchhhhhhhcCCCCHHHHHHHHHHHHc
Q 020071 170 LSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLE 249 (331)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~ 249 (331)
++.+++.+++..+++..++.+++++++.+++.++||+|.+++.++.+....+.|+.+++.++++......+++++++
T Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~~~~~--- 242 (323)
T 1sxj_B 166 LSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKMLLA--- 242 (323)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSBCHHHHHHHHTSCCHHHHHHHHSC---
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHCCCCHHHHHHHHhc---
Confidence 99999999999999999999999999999999999999999999988655567999999999999888899998887
Q ss_pred CCHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHhcc-cChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Q 020071 250 GKFDDACSGLKQ-LYDLGYSPTDIITTLFRIIKNYE-MAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRE 326 (331)
Q Consensus 250 ~~~~~~~~~l~~-l~~~g~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~~~ 326 (331)
++..+++.++.+ ++..|+++.+++..+.++++.+. ++...+.+++..+.+++++++.|+|+.++++.++++++++.+
T Consensus 243 ~~~~~~l~~l~~dl~~~g~~~~~i~~~l~~~~~~l~~~~~~~l~~~l~~l~~~~~~l~~~~~~~l~le~l~~~~~~~~~ 321 (323)
T 1sxj_B 243 SNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGTYLQLASMLAKIHKLNN 321 (323)
T ss_dssp SSHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhhcc
Confidence 788899999998 88899999999999999998876 788899999999999999999999999999999999998765
No 5
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=5.7e-44 Score=321.60 Aligned_cols=316 Identities=35% Similarity=0.564 Sum_probs=277.5
Q ss_pred CCCCCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCC-CCCCceEEeecCCC
Q 020071 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP-NYREAVMELNASDD 87 (331)
Q Consensus 9 ~~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~-~~~~~~~~~~~~~~ 87 (331)
.....||.++|+|.+|++++|+++.++.+..++..+..+|++|+||+|+|||++++.+++.+.+. .....++.+++.+.
T Consensus 21 ~~~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 100 (353)
T 1sxj_D 21 SLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE 100 (353)
T ss_dssp -----CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC
T ss_pred cccCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccc
Confidence 34457999999999999999999999999999999988889999999999999999999997542 23456788888876
Q ss_pred CChHhHHHHHHHHHhcccC---------CCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhh
Q 020071 88 RGIDVVRNKIKMFAQKKVT---------LPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPI 158 (331)
Q Consensus 88 ~~~~~i~~~i~~~~~~~~~---------~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l 158 (331)
.+.+.+++.+..+...... .+.+++++++|||+|.++...+++|++++++++.++++|++++.+.++.+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l 180 (353)
T 1sxj_D 101 RGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPL 180 (353)
T ss_dssp CCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred cchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchh
Confidence 6777777766665543211 1134678999999999999999999999999999999999999999999999
Q ss_pred hcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhh--CCC----ccchhhhhhhc
Q 020071 159 QSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS--GFR----FVNQENVFKVC 232 (331)
Q Consensus 159 ~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~--~~~----~i~~~~v~~~~ 232 (331)
++||..+.|.|++.+++..++..++..+++.+++++++.+++.++||+|.+++.++.++. +.. .|+.+++.+++
T Consensus 181 ~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~ 260 (353)
T 1sxj_D 181 ASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELA 260 (353)
T ss_dssp HHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHH
T ss_pred hccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999987642 221 79999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-ccChHhHHHHHHHHHHHHHHHhcCCCch
Q 020071 233 DQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-EMAEHLKLEFMKEAGFAHMRICDGVGSY 311 (331)
Q Consensus 233 ~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 311 (331)
.......++++++++..++...++.++.++...|+++..|+..+.+.+... +++...+.+++..+.++++++++|+|+.
T Consensus 261 ~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~ 340 (353)
T 1sxj_D 261 GVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNGTNEH 340 (353)
T ss_dssp TCCCSHHHHHHHHHHHSCCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCChH
Confidence 988889999999999999999999999999999999999999998887764 4788899999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 020071 312 LQLCGLLAKLSIV 324 (331)
Q Consensus 312 l~l~~l~~~l~~~ 324 (331)
++|+.++++++++
T Consensus 341 l~l~~~~~~~~~~ 353 (353)
T 1sxj_D 341 IQLLNLLVKISQL 353 (353)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999853
No 6
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=100.00 E-value=2.1e-42 Score=307.82 Aligned_cols=305 Identities=22% Similarity=0.316 Sum_probs=258.1
Q ss_pred CCCCCCCCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeec
Q 020071 6 SSSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNA 84 (331)
Q Consensus 6 ~~~~~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 84 (331)
...+....||.++|||.+|++++|+++.+..+.+++..+..|+ ++++||+|+|||++++++++.+ +.+++++++
T Consensus 7 ~~~~~~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l-----~~~~~~i~~ 81 (324)
T 3u61_B 7 ITVNEKEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV-----NADMMFVNG 81 (324)
T ss_dssp CCCCTTCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT-----TEEEEEEET
T ss_pred cccCcccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh-----CCCEEEEcc
Confidence 3445667799999999999999999999999999999999888 5888889999999999999998 678999998
Q ss_pred CCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC-HHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccc
Q 020071 85 SDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT-AGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCA 163 (331)
Q Consensus 85 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~-~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~ 163 (331)
++. +.+.+++.+..+..... ..++++++||||+|.++ .+.++.|++++++++.++++|+++|...++.+++++||.
T Consensus 82 ~~~-~~~~i~~~~~~~~~~~~--~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 82 SDC-KIDFVRGPLTNFASAAS--FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp TTC-CHHHHHTHHHHHHHBCC--CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred ccc-CHHHHHHHHHHHHhhcc--cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 775 57777777776655421 14578999999999999 999999999999999999999999999999999999999
Q ss_pred eeeecCCCHHH-------HHHHHHHHHHhcCCCCCH-HHHHHHHHhcCCCHHHHHHHHHHHhhCCCccchhhhhhhcCCC
Q 020071 164 IVRFSRLSDEE-------ILSRLMVVVQEEKVPYVP-EGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQP 235 (331)
Q Consensus 164 ~i~~~~~~~~~-------~~~~l~~~~~~~~~~i~~-~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~ 235 (331)
++.|++|+.++ +..++...+..+++.+++ ++++.+++.++||+|.+++.++.++ ..+.|+.+++.++...
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~-~~~~i~~~~v~~~~~~- 236 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS-SKGVLDAGILSLVTND- 236 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG-GGTCBCC----------
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh-ccCCCCHHHHHHHhCC-
Confidence 99999999877 455667777888999988 9999999999999999999999987 5567999999887665
Q ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccChHhHHHHHHHHHHHHHHHhcCCCchHHHH
Q 020071 236 HPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICDGVGSYLQLC 315 (331)
Q Consensus 236 ~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~ 315 (331)
.+.++++++++..++..+++.++.+++. ++..|+..+...... .++...+.++++.+++++++++.|.++.++|+
T Consensus 237 -~~~i~~~~~~~~~~~~~~a~~~~~~l~~---~~~~i~~~l~~~~~~-~~~~~~l~~i~~~l~~~d~~l~~g~~~~~~le 311 (324)
T 3u61_B 237 -RGAIDDVLESLKNKDVKQLRALAPKYAA---DYSWFVGKLAEEIYS-RVTPQSIIRMYEIVGENNQYHGIAANTELHLA 311 (324)
T ss_dssp ----CHHHHHHHHTTCHHHHHHHHHHHSS---CHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHTTTCSCHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHhcc---CHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 5678899999999999999999999877 888888887654433 26888899999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 020071 316 GLLAKLSIVR 325 (331)
Q Consensus 316 ~l~~~l~~~~ 325 (331)
.|+++++...
T Consensus 312 ~~~~~~~~~~ 321 (324)
T 3u61_B 312 YLFIQLACEM 321 (324)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9999998643
No 7
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=6.8e-42 Score=308.23 Aligned_cols=311 Identities=27% Similarity=0.404 Sum_probs=254.1
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHH-HcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCC---------------
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIA-RDGNMPNLILAGPPGTGKTTSILALAHELLGPNYR--------------- 76 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l-~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~--------------- 76 (331)
+||.+||||.+|++++|++++++.+.+++ ..+..+|++|+||+|+|||++++.+++.+.+...+
T Consensus 2 ~~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~ 81 (354)
T 1sxj_E 2 SLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR 81 (354)
T ss_dssp --CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------
T ss_pred CcchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccc
Confidence 48999999999999999999999999999 88888899999999999999999999987664321
Q ss_pred ---------CceEEeecCCCCChH--hHHHHHHHHHhcccC------CC-CCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Q 020071 77 ---------EAVMELNASDDRGID--VVRNKIKMFAQKKVT------LP-PGKHKVVVLDEADSMTAGAQQALRRTMEIY 138 (331)
Q Consensus 77 ---------~~~~~~~~~~~~~~~--~i~~~i~~~~~~~~~------~~-~~~~~vviide~d~l~~~~~~~Ll~~le~~ 138 (331)
..++.++..+..... .+++.+..+...... .. .++++++||||++.++...+++|+++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 82 KLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp ----CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred cceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 123445543321111 356666655432210 00 346899999999999999999999999999
Q ss_pred cCCcEEEEeeCCCCCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHhcCCCHHHHHHHHHHHh
Q 020071 139 SNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYV-PEGLEAIIFTADGDMRQALNNLQATY 217 (331)
Q Consensus 139 ~~~~~~I~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~-~~~~~~l~~~~~g~~r~~~~~l~~~~ 217 (331)
+.++.+|++|+++.++.++++|||..+.|+|++.+++..++..+++++|+.++ +++++.+++.++||+|.+++.++.+.
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMA 241 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999999999999886
Q ss_pred hCCC-ccchhhhhhhcCCCCHHHHHHHHHHHHcCC----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-cChHhHH
Q 020071 218 SGFR-FVNQENVFKVCDQPHPLHVKNMVRNVLEGK----FDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-MAEHLKL 291 (331)
Q Consensus 218 ~~~~-~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~----~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~-~~~~~~~ 291 (331)
.... .|+.+++ +........++++++++..++ ...+...+.+++..|+++.+|+..+...+.... ++...+.
T Consensus 242 ~~~~~~i~~~~~--~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~l~ 319 (354)
T 1sxj_E 242 LNNELALKSSSP--IIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKS 319 (354)
T ss_dssp HTTTTEECSSCC--CCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTTTCTTSCHHHHH
T ss_pred HhCCCCcCcCcC--CCCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCHHHHH
Confidence 5443 6776654 223334467899999998754 445666677788899999999988877655543 7888899
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 020071 292 EFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVR 325 (331)
Q Consensus 292 ~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~~ 325 (331)
++++.+++++++++.|.++.++|+.++.+++.++
T Consensus 320 ~~~~~l~~~d~~l~~g~~~~~~le~~~~~~~~~~ 353 (354)
T 1sxj_E 320 SIIEYSSVFDERLSLGNKAIFHLEGFIAKVMCCL 353 (354)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999865
No 8
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=100.00 E-value=4e-40 Score=298.66 Aligned_cols=312 Identities=18% Similarity=0.234 Sum_probs=273.1
Q ss_pred CCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCC--------------
Q 020071 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNYR-------------- 76 (331)
Q Consensus 12 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~-------------- 76 (331)
-.||.++|+|..|++++|+++.++.+...+..+..+| ++|+||+|+|||++++.+++.+.|....
T Consensus 3 ~~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 82 (373)
T 1jr3_A 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 82 (373)
T ss_dssp CCCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHH
T ss_pred cHHHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 3589999999999999999999999999999999888 7999999999999999999999875321
Q ss_pred -----CceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC
Q 020071 77 -----EAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVS 151 (331)
Q Consensus 77 -----~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~ 151 (331)
.+++.++.....+.+.+++.+..+...+. .++++++||||+|.++.+.++.|++++++++.++++|++++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 159 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA---RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCS---SSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCG
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhccc---cCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 13556665554556677887777665554 5678999999999999999999999999999999999999999
Q ss_pred CCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-hCCCccchhhhhh
Q 020071 152 SKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-SGFRFVNQENVFK 230 (331)
Q Consensus 152 ~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-~~~~~i~~~~v~~ 230 (331)
.++.+++++||..+.|.|++.+++..++..++++.|+.+++++++.+++.++||+|.+.+.++++. ...+.|+.++|.+
T Consensus 160 ~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~~~~i~~~~v~~ 239 (373)
T 1jr3_A 160 QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 (373)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHTTTCBCHHHHHH
T ss_pred HhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998764 3456799999999
Q ss_pred hcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------c---------------
Q 020071 231 VCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNY-----------E--------------- 284 (331)
Q Consensus 231 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~-----------~--------------- 284 (331)
+++......++++++++..++...++.++.++...|.++..++..+.+.++.+ .
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~l~~l~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ 319 (373)
T 1jr3_A 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELART 319 (373)
T ss_dssp HTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCTTCCCSGGGGTHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhhcCccccccchhHHHHHHHHHHh
Confidence 99999899999999999999999999999999999999998888776655431 0
Q ss_pred cChHhHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Q 020071 285 MAEHLKLEFMKEAGFAHMRICDGVGSYLQLCGLLAKLSIVRE 326 (331)
Q Consensus 285 ~~~~~~~~~~~~l~~~~~~l~~~~~~~l~l~~l~~~l~~~~~ 326 (331)
++...+.+++..+.+++.+++.+.++.+.+|.++++++....
T Consensus 320 ~~~~~l~~~~~~l~~~~~~lk~~~~~~l~le~~ll~~~~~~~ 361 (373)
T 1jr3_A 320 IPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 (373)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCC
Confidence 233334588899999999999999999999999999987643
No 9
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=2.8e-38 Score=276.68 Aligned_cols=281 Identities=17% Similarity=0.149 Sum_probs=237.4
Q ss_pred cCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHh-cCCCCCCceEEeecCC-CCChHhHHHHHHHHHhcccC
Q 020071 29 GNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL-LGPNYREAVMELNASD-DRGIDVVRNKIKMFAQKKVT 106 (331)
Q Consensus 29 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l-~~~~~~~~~~~~~~~~-~~~~~~i~~~i~~~~~~~~~ 106 (331)
||+++++.|.+.+++++.|+++||||+|+|||++|+++++.. .|.....++..+++.+ ..+++++++.++.+...++
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~- 79 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPE- 79 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCS-
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccc-
Confidence 788999999999999995568999999999999999999863 2333356788888764 6788999999988887776
Q ss_pred CCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccceeeecCCCHHHHHHHHHHHHHhc
Q 020071 107 LPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186 (331)
Q Consensus 107 ~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~ 186 (331)
.++++|+||||+|.|+.+++|+|+++||+||++++||++|+++++++++++|| +++|+|++++++.+|+.+++
T Consensus 80 --~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~~~~i~~~L~~~~--- 152 (305)
T 2gno_A 80 --LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNVPKEFRDLVKEKI--- 152 (305)
T ss_dssp --SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCHHHHHHHHHHH---
T ss_pred --cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEeCCCCCHHHHHHHHHHHh---
Confidence 67899999999999999999999999999999999999999999999999999 99999999999999999887
Q ss_pred CCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhC--------CCccchhhhhhhcCCCCHH--HHHHHHHHHHcCCHHHHH
Q 020071 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSG--------FRFVNQENVFKVCDQPHPL--HVKNMVRNVLEGKFDDAC 256 (331)
Q Consensus 187 ~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~--------~~~i~~~~v~~~~~~~~~~--~i~~l~~~~~~~~~~~~~ 256 (331)
.++++++ +.++||+|.+++.++..... ...-+.++|..++..+.+. .++++++++.+++..+++
T Consensus 153 --~i~~~~~----~~~~g~~~~al~~l~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~v~~l~~ai~~~~~~~a~ 226 (305)
T 2gno_A 153 --GDLWEEL----PLLERDFKTALEAYKLGAEKLSGLMESLKVLETEKLLKKVLSKGLEGYLACRELLERFSKVESKEFF 226 (305)
T ss_dssp --TTHHHHC----GGGGTCHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTTCSHHHHHHHHHHHHHHHHHSCGGGHH
T ss_pred --CCCHHHH----HHHCCCHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHccCCcchHHHHHHHHHHHCCCHHHHH
Confidence 3666665 55799999999888532100 0011467888888887755 899999999999999999
Q ss_pred HHHHHHHH--cCCCHHHHHHHHHHHHHhcccChHhHHHHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHH
Q 020071 257 SGLKQLYD--LGYSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRICD---GVGSYLQLCGLLAKLSIVR 325 (331)
Q Consensus 257 ~~l~~l~~--~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~---~~~~~l~l~~l~~~l~~~~ 325 (331)
..+++|+. .|+++.+++..+++.+...+ .....+.++.++.+++++.. |+|+.++|+.++.+++...
T Consensus 227 ~~~~~l~~~~~g~~~~~~i~~~~r~l~~~~--~~~~~~~l~~~~~~~~~~~~k~~g~~~~lql~~l~~~~~~~~ 298 (305)
T 2gno_A 227 ALFDQVTNTITGKDAFLLIQRLTRIILHEN--TWESVEDQKSVSFLDSILRVKIANLNNKLTLMNILAIHRERK 298 (305)
T ss_dssp HHHHHHHHHSCTHHHHHHHHHHHHHHHHTS--CCCSHHHHHHHHHHHHHHTCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhc--hhhhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Confidence 99999998 89999999999888887644 34446788899999999998 9999999999999999554
No 10
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=100.00 E-value=1.9e-36 Score=278.33 Aligned_cols=265 Identities=22% Similarity=0.298 Sum_probs=223.4
Q ss_pred CCCCchhhhcCCCCCCccccCHHHH---HHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCC
Q 020071 10 AYDIPWVEKYRPTKVCDIVGNLDAV---ARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASD 86 (331)
Q Consensus 10 ~~~~~~~~~~~p~~~~~~ig~~~~~---~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (331)
++..||++++||.+|++++|+++++ ..|...+..+..++++||||+|+|||++|+.+++.+ ..+++.+++..
T Consensus 11 ~~~~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~-----~~~f~~l~a~~ 85 (447)
T 3pvs_A 11 NTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA-----NADVERISAVT 85 (447)
T ss_dssp ---CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT-----TCEEEEEETTT
T ss_pred cccCChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh-----CCCeEEEEecc
Confidence 4446999999999999999999999 799999999998889999999999999999999998 66788888765
Q ss_pred CCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCC--CCCCChhhhcccce
Q 020071 87 DRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNV--SSKIIEPIQSRCAI 164 (331)
Q Consensus 87 ~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~--~~~l~~~l~sr~~~ 164 (331)
. +...+++.+........ .+++.++||||+|.++...++.|++++++ ..+++|++++. ...+.+++.|||.+
T Consensus 86 ~-~~~~ir~~~~~a~~~~~---~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~v 159 (447)
T 3pvs_A 86 S-GVKEIREAIERARQNRN---AGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARV 159 (447)
T ss_dssp C-CHHHHHHHHHHHHHHHH---TTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEEE
T ss_pred C-CHHHHHHHHHHHHHhhh---cCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCceeE
Confidence 4 67777877777665544 56789999999999999999999999997 45777777643 45889999999999
Q ss_pred eeecCCCHHHHHHHHHHHHHh-------cCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhh-------CCCccchhhhhh
Q 020071 165 VRFSRLSDEEILSRLMVVVQE-------EKVPYVPEGLEAIIFTADGDMRQALNNLQATYS-------GFRFVNQENVFK 230 (331)
Q Consensus 165 i~~~~~~~~~~~~~l~~~~~~-------~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~-------~~~~i~~~~v~~ 230 (331)
+.|.|++.+++..++.+.+.. .++.+++++++.|++.++||+|.+++.++.+.. +...||.+++.+
T Consensus 160 ~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~ 239 (447)
T 3pvs_A 160 YLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTE 239 (447)
T ss_dssp EECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHH
Confidence 999999999999999999886 567799999999999999999999999998752 224799999999
Q ss_pred hcCCC----------CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-ccc
Q 020071 231 VCDQP----------HPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKN-YEM 285 (331)
Q Consensus 231 ~~~~~----------~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~-~~~ 285 (331)
++... +++.+..+++++.+.|.++++.|+.+|+..|++|..|.+.+.+.+.+ +|+
T Consensus 240 ~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~ 305 (447)
T 3pvs_A 240 IAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGN 305 (447)
T ss_dssp HHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Confidence 88775 33677888889999999999999999999999999999999887765 565
No 11
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=100.00 E-value=4.3e-36 Score=267.64 Aligned_cols=282 Identities=17% Similarity=0.186 Sum_probs=222.3
Q ss_pred CHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCC-------------------CCceEEeecC---C
Q 020071 30 NLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNY-------------------REAVMELNAS---D 86 (331)
Q Consensus 30 ~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~-------------------~~~~~~~~~~---~ 86 (331)
+++.++.+.+.+++++.+| +||+||+|+|||++|+.+++.+.|... ..++..+++. .
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 86 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKN 86 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCS
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCC
Confidence 3458999999999999999 899999999999999999999998642 1456777764 4
Q ss_pred CCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccceee
Q 020071 87 DRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVR 166 (331)
Q Consensus 87 ~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~~i~ 166 (331)
..+++++++.++.+...+. .++++|+||||+|.++.+++|+|++++|+|+.+++||++|+++++++++++|||+.+.
T Consensus 87 ~~~i~~ir~l~~~~~~~~~---~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~ 163 (334)
T 1a5t_A 87 TLGVDAVREVTEKLNEHAR---LGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHY 163 (334)
T ss_dssp SBCHHHHHHHHHHTTSCCT---TSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHhhccc---cCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeee
Confidence 5678889998888776665 6789999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCCccchhhhhhhcCCCCHHHHHHHHHH
Q 020071 167 FSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 246 (331)
Q Consensus 167 ~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~ 246 (331)
|+|++.+++.+|+.+++ .+++++++.+++.++|++|.+++.++........++.+.+..+... ..++++++.
T Consensus 164 ~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 235 (334)
T 1a5t_A 164 LAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVPS---GDWYSLLAA 235 (334)
T ss_dssp CCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSHHHHHHHHHHHHHHHHHHH---CCCGGGHHH
T ss_pred CCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhccchHHHHHHHHHHHHHHHhC---hHHHHHHHH
Confidence 99999999999998864 6799999999999999999999998765422223344444443321 112234555
Q ss_pred HHcCCHHHHHHHHH----HHHHcC-----CCHHHHHHHHHHHHHhcccChHhHHHHHHHHHHHHHHHh--cCCCchHHHH
Q 020071 247 VLEGKFDDACSGLK----QLYDLG-----YSPTDIITTLFRIIKNYEMAEHLKLEFMKEAGFAHMRIC--DGVGSYLQLC 315 (331)
Q Consensus 247 ~~~~~~~~~~~~l~----~l~~~g-----~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~--~~~~~~l~l~ 315 (331)
+.+.+....+.++. +++... ....+....+.++++. ++...+.++++.+.+++++++ .|+|+++++|
T Consensus 236 l~~~~~~~~l~~l~~~~rdll~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~l~~~~~~l~~~~~~l~~~~~~n~~l~le 313 (334)
T 1a5t_A 236 LNHEQAPARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAELANH--LSPSRLQAILGDVCHIREQLMSVTGINRELLIT 313 (334)
T ss_dssp HCSTTHHHHHHHHHHHHHHHTCC------CCCTTCHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHHHHHhccCCccccCHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 55556655554444 443221 1112233445555565 677888999999999999999 9999999999
Q ss_pred HHHHHHHHH
Q 020071 316 GLLAKLSIV 324 (331)
Q Consensus 316 ~l~~~l~~~ 324 (331)
.++++++..
T Consensus 314 ~ll~~l~~~ 322 (334)
T 1a5t_A 314 DLLLRIEHY 322 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999864
No 12
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=100.00 E-value=9.1e-34 Score=253.96 Aligned_cols=279 Identities=11% Similarity=0.081 Sum_probs=236.6
Q ss_pred HHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCC-ceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCce
Q 020071 36 RLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNYRE-AVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHK 113 (331)
Q Consensus 36 ~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~ 113 (331)
.+.+.++ ++.+| ++||||+|+||++.+..+++.+.|.++.. ..+.++. ..++++.++.+...++ +++++
T Consensus 8 ~l~~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~pl---f~~~k 78 (343)
T 1jr3_D 8 QLRAQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-----NTDWNAIFSLCQAMSL---FASRQ 78 (343)
T ss_dssp THHHHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT-----TCCHHHHHHHHHHHHH---CCSCE
T ss_pred HHHHHHh-cCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC-----CCCHHHHHHHhcCcCC---ccCCe
Confidence 3455666 45556 79999999999999999999987654322 2344442 2467788888878777 78899
Q ss_pred EEEEeCCCC-CCHHHHHHHHHHHHHhcCCcEEEEeeCCC------CCCChhhhcccceeeecCCCHHHHHHHHHHHHHhc
Q 020071 114 VVVLDEADS-MTAGAQQALRRTMEIYSNSTRFALACNVS------SKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEE 186 (331)
Q Consensus 114 vviide~d~-l~~~~~~~Ll~~le~~~~~~~~I~~~~~~------~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~ 186 (331)
+|||||+|. ++.+.+++|++++++||+++++|++++.. .++.+++.|||.++.|.|++.+++..|+.++++++
T Consensus 79 vvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~ 158 (343)
T 1jr3_D 79 TLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQL 158 (343)
T ss_dssp EEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHc
Confidence 999999999 99999999999999999999999998763 46889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhh--CCCccchhhhhhhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020071 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYS--GFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYD 264 (331)
Q Consensus 187 ~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~--~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~ 264 (331)
|+.+++++++.|++.++||++.+.+++++++. +.+.||.++|.++++......++++++++..++..+++.++.+|..
T Consensus 159 g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~~~if~l~~ai~~~d~~~al~~l~~l~~ 238 (343)
T 1jr3_D 159 NLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRL 238 (343)
T ss_dssp TCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCCCCHHHHHHHHTTSCHHHHHHHHTSSTT
T ss_pred CCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998863 4568999999998887777889999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhc-------------------c---------------cChHhHHHHHHHHHHHHHHHhcCC--
Q 020071 265 LGYSPTDIITTLFRIIKNY-------------------E---------------MAEHLKLEFMKEAGFAHMRICDGV-- 308 (331)
Q Consensus 265 ~g~~~~~i~~~l~~~~~~~-------------------~---------------~~~~~~~~~~~~l~~~~~~l~~~~-- 308 (331)
.|+++..|+..+.+.++.+ + ++...+.+++..+.+++.+++++.
T Consensus 239 ~g~~~~~il~~l~~~~r~l~~~~~~~~~g~~~~i~~~l~i~~~~~~~~~~~~~~~s~~~L~~~l~~l~~~d~~lK~~~~~ 318 (343)
T 1jr3_D 239 EGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGMMGEALNRLSQTQLRQAVQLLTRTELTLKQDYGQ 318 (343)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHTCCSSHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999998876655432 1 122223588899999999999864
Q ss_pred CchHHHHHHHHHHHH
Q 020071 309 GSYLQLCGLLAKLSI 323 (331)
Q Consensus 309 ~~~l~l~~l~~~l~~ 323 (331)
++++.||.++++++.
T Consensus 319 ~~~~~le~l~l~l~~ 333 (343)
T 1jr3_D 319 SVWAELEGLSLLLCH 333 (343)
T ss_dssp CHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHcC
Confidence 778999999999874
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.8e-31 Score=224.01 Aligned_cols=221 Identities=46% Similarity=0.786 Sum_probs=195.3
Q ss_pred CCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChH
Q 020071 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGID 91 (331)
Q Consensus 12 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (331)
..||.++|+|..|++++|++..+..+..++..+..++++|+||+|+|||++++.+++.+.+......++.+++....+.+
T Consensus 4 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (226)
T 2chg_A 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID 83 (226)
T ss_dssp CCCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHH
T ss_pred hhhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChH
Confidence 35899999999999999999999999999999888789999999999999999999998766666778889888776766
Q ss_pred hHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccceeeecCCC
Q 020071 92 VVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCAIVRFSRLS 171 (331)
Q Consensus 92 ~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~~i~~~~~~ 171 (331)
.+.+.+..+..... ...+++.+++|||+|.+....++.|++++++++.++++|++++....+.+.+.+|+..+.|+|++
T Consensus 84 ~~~~~~~~~~~~~~-~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~ 162 (226)
T 2chg_A 84 VVRHKIKEFARTAP-IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVP 162 (226)
T ss_dssp HHHHHHHHHHTSCC-STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred HHHHHHHHHhcccC-CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCC
Confidence 66666666554321 11356889999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhhCCCccchhhhhhhcC
Q 020071 172 DEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCD 233 (331)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~ 233 (331)
.+++..++..++...+..+++++++.+++.++||+|.+.+.++.++...+.|+.+++.++++
T Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~~~I~~~~v~~~~~ 224 (226)
T 2chg_A 163 KEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCceecHHHHHHHhc
Confidence 99999999999998899999999999999999999999999998876567899998887654
No 14
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.97 E-value=2.6e-29 Score=213.65 Aligned_cols=220 Identities=24% Similarity=0.325 Sum_probs=181.8
Q ss_pred CCCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCC-------------
Q 020071 11 YDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGPNYR------------- 76 (331)
Q Consensus 11 ~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~------------- 76 (331)
...||.++|+|..|++++|+++.++.+..++..+..++ ++|+||+|+|||++++.+++.+.+....
T Consensus 9 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (250)
T 1njg_A 9 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 88 (250)
T ss_dssp --CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHH
T ss_pred HHHHHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 34689999999999999999999999999999988776 7999999999999999999988653211
Q ss_pred ------CceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 77 ------EAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 77 ------~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
..+..++.......+.+.+.+......+. .+++.++||||+|.++...++.|++.+++++.++.+|++++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~ 165 (250)
T 1njg_A 89 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA---RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 165 (250)
T ss_dssp HHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCS---SSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESC
T ss_pred HhccCCcceEEecCcccccHHHHHHHHHHhhhchh---cCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 12344444433333444444443322222 456789999999999999999999999998889999999999
Q ss_pred CCCCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-hCCCccchhhhh
Q 020071 151 SSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-SGFRFVNQENVF 229 (331)
Q Consensus 151 ~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-~~~~~i~~~~v~ 229 (331)
...+.+++.+|+..+.|+|++.+++.+++..++...+..+++++++.+++.++|++|.+.+.++.+. .+.+.|+.+++.
T Consensus 166 ~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~~~i~~~~v~ 245 (250)
T 1njg_A 166 PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 245 (250)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTTSSBCHHHHH
T ss_pred hHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCceecHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999999998775 344579999888
Q ss_pred hhcC
Q 020071 230 KVCD 233 (331)
Q Consensus 230 ~~~~ 233 (331)
++++
T Consensus 246 ~~~~ 249 (250)
T 1njg_A 246 AMLG 249 (250)
T ss_dssp HHSC
T ss_pred HHhC
Confidence 7654
No 15
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.96 E-value=1.6e-28 Score=230.92 Aligned_cols=237 Identities=30% Similarity=0.457 Sum_probs=185.2
Q ss_pred CCCCCCCchhhhcCCCCCCccccCHHHHHHHHHHHHcC-----------------CCCeEEEeCCCCccHHHHHHHHHHH
Q 020071 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDG-----------------NMPNLILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 7 ~~~~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~-----------------~~~~~ll~G~~G~GKt~la~~l~~~ 69 (331)
+......+|++||+|.+|++++|++..++.+..++... ..++++|+||+|+|||++|+++++.
T Consensus 21 ~~~~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 21 PHMASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp -----CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 33445568999999999999999999999999998761 2345899999999999999999999
Q ss_pred hcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcc-c----C------CCCCCceEEEEeCCCCCCHHHH---HHHHHHH
Q 020071 70 LLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKK-V----T------LPPGKHKVVVLDEADSMTAGAQ---QALRRTM 135 (331)
Q Consensus 70 l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-~----~------~~~~~~~vviide~d~l~~~~~---~~Ll~~l 135 (331)
+ +..++++++++......+...+....... . . ...+.+.++||||+|.++...+ +.|++++
T Consensus 101 l-----~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l 175 (516)
T 1sxj_A 101 L-----GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFC 175 (516)
T ss_dssp T-----TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHH
T ss_pred c-----CCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHH
Confidence 8 67889999988766554444333221110 0 0 0124678999999999976544 7888999
Q ss_pred HHhcCCcEEEEeeCCCC-CCChhhhcccceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 020071 136 EIYSNSTRFALACNVSS-KIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQ 214 (331)
Q Consensus 136 e~~~~~~~~I~~~~~~~-~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~ 214 (331)
+.. ..++|++++... ...+++++||..+.|++++.+++.+++..++.++++.+++++++.|++.++||+|.+++.++
T Consensus 176 ~~~--~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 176 RKT--STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp HHC--SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred Hhc--CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 874 456777777653 44567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCccchhhhhhhcC---CCCHHHHHHHHHHHHcC
Q 020071 215 ATYSGFRFVNQENVFKVCD---QPHPLHVKNMVRNVLEG 250 (331)
Q Consensus 215 ~~~~~~~~i~~~~v~~~~~---~~~~~~i~~l~~~~~~~ 250 (331)
.++.....|+.+++.+++. ......++++++.+..+
T Consensus 254 ~~~~~~~~It~~~v~~~~~~~~~~~~~~~f~~~~~il~~ 292 (516)
T 1sxj_A 254 TISTTTKTINHENINEISKAWEKNIALKPFDIAHKMLDG 292 (516)
T ss_dssp HHHHHSSCCCTTHHHHHHHHHHTTTTSHHHHHHHHHTBG
T ss_pred HHHhcCCCCchHHHHHHHHhhccCCCCCHHHHHHHHhcC
Confidence 8877777899998877654 33444677777777754
No 16
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.95 E-value=7.2e-26 Score=202.27 Aligned_cols=208 Identities=15% Similarity=0.206 Sum_probs=167.5
Q ss_pred CCCCchhhhcCCCCCCccccCHHHHHHHHHHHHc-----CCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeec
Q 020071 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARD-----GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNA 84 (331)
Q Consensus 10 ~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~-----~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 84 (331)
.....|.++|+|.+|++++|++..+..+..++.. ...++++|+||+|+|||++|+++++.+ +.+++.+++
T Consensus 14 ~~~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~-----~~~~~~~~~ 88 (338)
T 3pfi_A 14 SFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM-----SANIKTTAA 88 (338)
T ss_dssp ---------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT-----TCCEEEEEG
T ss_pred chhhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh-----CCCeEEecc
Confidence 4556899999999999999999999999888875 334469999999999999999999998 667888888
Q ss_pred CCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc------------------CCcEEEE
Q 020071 85 SDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS------------------NSTRFAL 146 (331)
Q Consensus 85 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~------------------~~~~~I~ 146 (331)
........+...+.. .+.+.++||||++.++...++.|++.+++.. +.+++|+
T Consensus 89 ~~~~~~~~~~~~~~~---------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 89 PMIEKSGDLAAILTN---------LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp GGCCSHHHHHHHHHT---------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred hhccchhHHHHHHHh---------ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 766554444444332 2457899999999999999999999998643 1368899
Q ss_pred eeCCCCCCChhhhccc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-----hCC
Q 020071 147 ACNVSSKIIEPIQSRC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-----SGF 220 (331)
Q Consensus 147 ~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-----~~~ 220 (331)
++|....+.+++++|+ ..+.|++++.+++..++...+...+..+++++++.+++.++||+|.+.+.++.+. .+.
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~ 239 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDE 239 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcC
Confidence 9999888999999999 7899999999999999999999999999999999999999999999999998752 235
Q ss_pred Cccchhhhhhh
Q 020071 221 RFVNQENVFKV 231 (331)
Q Consensus 221 ~~i~~~~v~~~ 231 (331)
..|+.+++...
T Consensus 240 ~~i~~~~~~~~ 250 (338)
T 3pfi_A 240 EIITEKRANEA 250 (338)
T ss_dssp SEECHHHHHHH
T ss_pred CccCHHHHHHH
Confidence 56777776543
No 17
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.94 E-value=2.1e-25 Score=201.49 Aligned_cols=219 Identities=20% Similarity=0.239 Sum_probs=167.1
Q ss_pred CCCchhhhcCCCC-CCccccCHHHHHH---HHHHHHcCCCC--eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeec
Q 020071 11 YDIPWVEKYRPTK-VCDIVGNLDAVAR---LGIIARDGNMP--NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNA 84 (331)
Q Consensus 11 ~~~~~~~~~~p~~-~~~~ig~~~~~~~---l~~~l~~~~~~--~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 84 (331)
..+++.++++|.. |++++|++..+.. +...+..+..+ +++|+||||+|||++|+++++.+.+. .+++.+++
T Consensus 29 ~~l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~---~~~~~~~~ 105 (368)
T 3uk6_A 29 RGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD---TPFTAIAG 105 (368)
T ss_dssp CSCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS---CCEEEEEG
T ss_pred hccCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc---CCcccccc
Confidence 3457889999998 9999999999775 56667777765 59999999999999999999998542 34444442
Q ss_pred CCC--------------------------------------------------CC-----hHhHHHHHHHHHhcccC--C
Q 020071 85 SDD--------------------------------------------------RG-----IDVVRNKIKMFAQKKVT--L 107 (331)
Q Consensus 85 ~~~--------------------------------------------------~~-----~~~i~~~i~~~~~~~~~--~ 107 (331)
... .+ ...+++.+..+...... .
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~ 185 (368)
T 3uk6_A 106 SEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGK 185 (368)
T ss_dssp GGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcc
Confidence 210 01 22334444333321110 0
Q ss_pred CCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeC------------CCCCCChhhhcccceeeecCCCHHHH
Q 020071 108 PPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACN------------VSSKIIEPIQSRCAIVRFSRLSDEEI 175 (331)
Q Consensus 108 ~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~------------~~~~l~~~l~sr~~~i~~~~~~~~~~ 175 (331)
....+.++||||+|.++.+.++.|++.+++++..+ ++++++ .+..+.+++++||..+.|+|++.+++
T Consensus 186 ~~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~ 264 (368)
T 3uk6_A 186 AEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDT 264 (368)
T ss_dssp ---CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHH
T ss_pred ccccCceEEEhhccccChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHH
Confidence 01114699999999999999999999999887765 444443 25678899999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHh-----hCCCccchhhhhhhcC
Q 020071 176 LSRLMVVVQEEKVPYVPEGLEAIIFTAD-GDMRQALNNLQATY-----SGFRFVNQENVFKVCD 233 (331)
Q Consensus 176 ~~~l~~~~~~~~~~i~~~~~~~l~~~~~-g~~r~~~~~l~~~~-----~~~~~i~~~~v~~~~~ 233 (331)
..+++.++...+..+++++++.+++.+. ||+|.+.+.++.+. .+...|+.+++.+++.
T Consensus 265 ~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~ 328 (368)
T 3uk6_A 265 KQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYS 328 (368)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999998 99999999998753 3566899888877543
No 18
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.93 E-value=2.8e-24 Score=190.78 Aligned_cols=203 Identities=20% Similarity=0.235 Sum_probs=165.0
Q ss_pred hhhhcCCCCCCccccCHHHHHHHHHHHHc----C-CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCC
Q 020071 15 WVEKYRPTKVCDIVGNLDAVARLGIIARD----G-NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRG 89 (331)
Q Consensus 15 ~~~~~~p~~~~~~ig~~~~~~~l~~~l~~----~-~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 89 (331)
|.++|+|.+|++++|++..+..+...+.. + ...+++|+||+|+|||++|+++++.+ +.+++.+++.....
T Consensus 2 ~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~-----~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 2 EDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL-----GVNLRVTSGPAIEK 76 (324)
T ss_dssp ---CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH-----TCCEEEECTTTCCS
T ss_pred CccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEeccccCC
Confidence 67899999999999999999988887763 2 33459999999999999999999998 56677788776644
Q ss_pred hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc------------------CCcEEEEeeCCC
Q 020071 90 IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS------------------NSTRFALACNVS 151 (331)
Q Consensus 90 ~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~------------------~~~~~I~~~~~~ 151 (331)
...+...+. . . .+.+.++||||++.++...++.|++.+++.. .++++|+++|..
T Consensus 77 ~~~l~~~l~---~-~----~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~ 148 (324)
T 1hqc_A 77 PGDLAAILA---N-S----LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRP 148 (324)
T ss_dssp HHHHHHHHT---T-T----CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCC
T ss_pred hHHHHHHHH---H-h----ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCc
Confidence 333333221 1 1 2457799999999999999999999999743 357899999999
Q ss_pred CCCChhhhccc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhh-----CCCccch
Q 020071 152 SKIIEPIQSRC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS-----GFRFVNQ 225 (331)
Q Consensus 152 ~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~-----~~~~i~~ 225 (331)
..+.+++.+|+ .++.|++++.+++..++...+...+..+++++++.++.+++|++|.+.+.++.+.. +...|+.
T Consensus 149 ~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~ 228 (324)
T 1hqc_A 149 GLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITR 228 (324)
T ss_dssp SSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCH
T ss_pred ccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 99999999999 58999999999999999999998899999999999999999999999999987642 2345777
Q ss_pred hhhhh
Q 020071 226 ENVFK 230 (331)
Q Consensus 226 ~~v~~ 230 (331)
+++..
T Consensus 229 ~~~~~ 233 (324)
T 1hqc_A 229 ERALE 233 (324)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 19
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.93 E-value=1.5e-24 Score=200.81 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=107.9
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEee---------CC----CCCCChhhhcccceeeecCCCHHHHHHHH
Q 020071 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALAC---------NV----SSKIIEPIQSRCAIVRFSRLSDEEILSRL 179 (331)
Q Consensus 113 ~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~---------~~----~~~l~~~l~sr~~~i~~~~~~~~~~~~~l 179 (331)
+|+||||+|.|+.+++++|++++|+|+.. .||+++ ++ +.+++++++|||+.+.|+|++.+++.++|
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 69999999999999999999999999988 577777 44 67899999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHH---h--hCCCccchhhhhhhcC
Q 020071 180 MVVVQEEKVPYVPEGLEAIIFTA-DGDMRQALNNLQAT---Y--SGFRFVNQENVFKVCD 233 (331)
Q Consensus 180 ~~~~~~~~~~i~~~~~~~l~~~~-~g~~r~~~~~l~~~---~--~~~~~i~~~~v~~~~~ 233 (331)
+.++..+++.++++++..++..+ +|++|.++++++.+ + .+...|+.++|.++..
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~ 435 (456)
T 2c9o_A 376 KIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISE 435 (456)
T ss_dssp HHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHH
Confidence 99999999999999999999999 99999999999865 2 3667899999887543
No 20
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.91 E-value=8.3e-24 Score=179.51 Aligned_cols=211 Identities=12% Similarity=0.120 Sum_probs=163.5
Q ss_pred CCCCchhhhcCC-CCCCcccc---CHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecC
Q 020071 10 AYDIPWVEKYRP-TKVCDIVG---NLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNAS 85 (331)
Q Consensus 10 ~~~~~~~~~~~p-~~~~~~ig---~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 85 (331)
+.+.||..+++| .+|+++++ +..++..+..++..+..++++|+||+|+|||++++.+++.+.+. +..+..+++.
T Consensus 12 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~ 89 (242)
T 3bos_A 12 PLQLSLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLG 89 (242)
T ss_dssp -CCCEEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGG
T ss_pred hhhcCCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHH
Confidence 447799999999 79999996 46888889988887666679999999999999999999988654 2445555554
Q ss_pred CCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHH--HHHHHHHHHHhcCC--cEEEEeeCCCC----CCChh
Q 020071 86 DDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGA--QQALRRTMEIYSNS--TRFALACNVSS----KIIEP 157 (331)
Q Consensus 86 ~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~--~~~Ll~~le~~~~~--~~~I~~~~~~~----~l~~~ 157 (331)
+... .+.+.+. . ..++.+++|||++.+.... ++.|+.+++..... ..+|++++... .+.+.
T Consensus 90 ~~~~--~~~~~~~-----~----~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 158 (242)
T 3bos_A 90 IHAS--ISTALLE-----G----LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPD 158 (242)
T ss_dssp GGGG--SCGGGGT-----T----GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHH
T ss_pred HHHH--HHHHHHH-----h----ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhh
Confidence 3211 1101110 0 2346799999999997665 88899988765432 24777776543 45689
Q ss_pred hhccc---ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh----hCCCccchhhhhh
Q 020071 158 IQSRC---AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY----SGFRFVNQENVFK 230 (331)
Q Consensus 158 l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~----~~~~~i~~~~v~~ 230 (331)
+.+|+ .++.|+|++.++..+++...+...++.+++++++.+++.++||+|.+.+.++.+. .....||.+++.+
T Consensus 159 l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~~It~~~v~~ 238 (242)
T 3bos_A 159 LVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQRKLTIPFVKE 238 (242)
T ss_dssp HHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred hhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 99999 8999999999999999999999899999999999999999999999999998763 2356688888877
Q ss_pred hcC
Q 020071 231 VCD 233 (331)
Q Consensus 231 ~~~ 233 (331)
++.
T Consensus 239 ~l~ 241 (242)
T 3bos_A 239 MLR 241 (242)
T ss_dssp HHT
T ss_pred Hhh
Confidence 543
No 21
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.91 E-value=1.6e-22 Score=183.87 Aligned_cols=282 Identities=14% Similarity=0.133 Sum_probs=195.1
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHc----CC--CCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCC
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARD----GN--MPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASD 86 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~----~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (331)
.+|..+|+| ++++|++..+..+..++.. +. .++++|+||+|+|||++++.+++.+.+.. +..++.+++..
T Consensus 8 ~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~ 83 (389)
T 1fnn_A 8 SVFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFI 83 (389)
T ss_dssp GGGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTT
T ss_pred hhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCcc
Confidence 468888888 7899999999988888765 22 23689999999999999999999986542 34577788665
Q ss_pred CCChH-hHHHHHHHHHhccc--C--------------CCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc----CCcEEE
Q 020071 87 DRGID-VVRNKIKMFAQKKV--T--------------LPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS----NSTRFA 145 (331)
Q Consensus 87 ~~~~~-~i~~~i~~~~~~~~--~--------------~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~----~~~~~I 145 (331)
..... .+......+..... . ...+++.+++|||++.++...++.|++++++.+ .++.+|
T Consensus 84 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI 163 (389)
T 1fnn_A 84 YRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALV 163 (389)
T ss_dssp CCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEE
T ss_pred CCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEE
Confidence 43322 22222211110000 0 002346799999999999999999999998654 478899
Q ss_pred EeeCCC---CCCChhhhcccc--eeeecCCCHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHhc---------CCCHHHH
Q 020071 146 LACNVS---SKIIEPIQSRCA--IVRFSRLSDEEILSRLMVVVQE--EKVPYVPEGLEAIIFTA---------DGDMRQA 209 (331)
Q Consensus 146 ~~~~~~---~~l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~--~~~~i~~~~~~~l~~~~---------~g~~r~~ 209 (331)
++++.. ..+.+.+.+|+. .+.|+|++.+++.+++..++.. ....+++++++.+++.+ +||+|.+
T Consensus 164 ~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~ 243 (389)
T 1fnn_A 164 IVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLA 243 (389)
T ss_dssp EEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHH
T ss_pred EEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHH
Confidence 999887 678889999986 6999999999999999998875 23478999999999999 8999999
Q ss_pred HHHHHHHhh-----CCCccchhhhhhhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH--HcC--CCHHHHHHHHHHHH
Q 020071 210 LNNLQATYS-----GFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLY--DLG--YSPTDIITTLFRII 280 (331)
Q Consensus 210 ~~~l~~~~~-----~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~--~~g--~~~~~i~~~l~~~~ 280 (331)
.+.++.+.. +...|+.+++..+........+.+.++.+. .+...++..+..+. ..| .+..++...+..++
T Consensus 244 ~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~-~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (389)
T 1fnn_A 244 IDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLP-LHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVC 322 (389)
T ss_dssp HHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSC-HHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCC-HHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHH
Confidence 999987642 456788888876543322222333333332 22334455554544 244 45566667666677
Q ss_pred Hhccc---ChHhHHHHHHHHHH
Q 020071 281 KNYEM---AEHLKLEFMKEAGF 299 (331)
Q Consensus 281 ~~~~~---~~~~~~~~~~~l~~ 299 (331)
+..++ +.....++++.+.+
T Consensus 323 ~~~~~~~~~~~~~~~~l~~L~~ 344 (389)
T 1fnn_A 323 EEYGERPRVHSQLWSYLNDLRE 344 (389)
T ss_dssp HHTTCCCCCHHHHHHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHHHHHh
Confidence 76553 44555566665543
No 22
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.90 E-value=5.7e-22 Score=176.37 Aligned_cols=205 Identities=19% Similarity=0.230 Sum_probs=159.6
Q ss_pred chhhhcCCCCCCccccCHHHHHHHHHHHHcC-----CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC
Q 020071 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDG-----NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR 88 (331)
Q Consensus 14 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~-----~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (331)
+|.++++|..|++++|++.++..+...+..+ ...+++|+||+|+|||++++.++..+. .++...++....
T Consensus 14 ~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~-----~~~~~~sg~~~~ 88 (334)
T 1in4_A 14 SGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ-----TNIHVTSGPVLV 88 (334)
T ss_dssp ---CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT-----CCEEEEETTTCC
T ss_pred HHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEechHhc
Confidence 5799999999999999999999888877653 334599999999999999999999983 334444444333
Q ss_pred ChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc------------------CCcEEEEeeCC
Q 020071 89 GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS------------------NSTRFALACNV 150 (331)
Q Consensus 89 ~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~------------------~~~~~I~~~~~ 150 (331)
....+...... ...+.|++|||++.+....++.|+..++... +.+.++.+++.
T Consensus 89 ~~~~l~~~~~~---------~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~ 159 (334)
T 1in4_A 89 KQGDMAAILTS---------LERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTR 159 (334)
T ss_dssp SHHHHHHHHHH---------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESC
T ss_pred CHHHHHHHHHH---------ccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCC
Confidence 33333332211 1246799999999999888888888876532 13556777888
Q ss_pred CCCCChhhhcccc-eeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh-----hCCCccc
Q 020071 151 SSKIIEPIQSRCA-IVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY-----SGFRFVN 224 (331)
Q Consensus 151 ~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~-----~~~~~i~ 224 (331)
+..+.+.+++||. ...|.|++.+++.+++++.++..++.++++++..|++.++|++|.+.+.++.+. .+.+.||
T Consensus 160 ~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It 239 (334)
T 1in4_A 160 SGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRIN 239 (334)
T ss_dssp GGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBC
T ss_pred cccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcC
Confidence 8899999999996 579999999999999999998889999999999999999999999999997642 3456788
Q ss_pred hhhhhhhc
Q 020071 225 QENVFKVC 232 (331)
Q Consensus 225 ~~~v~~~~ 232 (331)
.+.+.+++
T Consensus 240 ~~~v~~al 247 (334)
T 1in4_A 240 TDIVLKTM 247 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777644
No 23
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.90 E-value=1.3e-21 Score=177.61 Aligned_cols=278 Identities=17% Similarity=0.117 Sum_probs=189.7
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHc----CCCCeEEEeCCCCccHHHHHHHHHHHhcCC----CCCCceEEeec
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARD----GNMPNLILAGPPGTGKTTSILALAHELLGP----NYREAVMELNA 84 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKt~la~~l~~~l~~~----~~~~~~~~~~~ 84 (331)
.+|..+|.| ++++|++..+..+..++.. +...+++|+||+|+|||++++.+++.+.+. +.+..++.+++
T Consensus 10 ~~l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 10 WVLLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp HHHSTTCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred HhcCCccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 356677777 7899999999999998854 344459999999999999999999987432 12456778887
Q ss_pred CCCCChHh-------------------HHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHH--HHHHHHHHHHHh-----
Q 020071 85 SDDRGIDV-------------------VRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG--AQQALRRTMEIY----- 138 (331)
Q Consensus 85 ~~~~~~~~-------------------i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~--~~~~Ll~~le~~----- 138 (331)
........ ..+....+..... ..+++.+++|||+|.+... .++.|..+++.+
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~ 164 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLS--RLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGD 164 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHT--TSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC--
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh--ccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCC
Confidence 65432221 1111111111110 1344679999999999876 778888888754
Q ss_pred cCCcEEEEeeCCC---CCCChhhhccc--ceeeecCCCHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHhcC---CCHHH
Q 020071 139 SNSTRFALACNVS---SKIIEPIQSRC--AIVRFSRLSDEEILSRLMVVVQE--EKVPYVPEGLEAIIFTAD---GDMRQ 208 (331)
Q Consensus 139 ~~~~~~I~~~~~~---~~l~~~l~sr~--~~i~~~~~~~~~~~~~l~~~~~~--~~~~i~~~~~~~l~~~~~---g~~r~ 208 (331)
+.++.+|++++.. ..+.+.+.+|+ ..+.|+|++.+++..++..++.. .+..+++++++.+++.++ ||+|.
T Consensus 165 ~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~ 244 (387)
T 2v1u_A 165 RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARR 244 (387)
T ss_dssp ---CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHH
T ss_pred CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHH
Confidence 5577899999876 67889999998 67999999999999999999875 566789999999999998 99999
Q ss_pred HHHHHHHHh-----hCCCccchhhhhhhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcC---CCHHHHHHHHHHH
Q 020071 209 ALNNLQATY-----SGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQL-YDLG---YSPTDIITTLFRI 279 (331)
Q Consensus 209 ~~~~l~~~~-----~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l-~~~g---~~~~~i~~~l~~~ 279 (331)
+.+.++.+. .+...|+.+++.+++.....+ .+.+.+...+..+...++.-+ +..| ....+++..+..+
T Consensus 245 ~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~---~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 245 ALDLLRVAGEIAERRREERVRREHVYSARAEIERD---RVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH---HHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhc---hHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 999998764 245679999888765443222 233444455555544433322 1123 2345666666667
Q ss_pred HHhccc---ChHhHHHHHHHHH
Q 020071 280 IKNYEM---AEHLKLEFMKEAG 298 (331)
Q Consensus 280 ~~~~~~---~~~~~~~~~~~l~ 298 (331)
++..+. +.....++++.+.
T Consensus 322 ~~~~~~~~~~~~~~~~~l~~L~ 343 (387)
T 2v1u_A 322 TSTLGLEHVTLRRVSGIISELD 343 (387)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHH
T ss_pred HHhcCCCCCCHHHHHHHHHHHH
Confidence 766653 3334444444444
No 24
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.89 E-value=3.6e-22 Score=181.23 Aligned_cols=275 Identities=17% Similarity=0.111 Sum_probs=184.6
Q ss_pred CCchhhhcCCCCCCccccCHHHHHHHHHHHHc---C-CCCeEEEeCCCCccHHHHHHHHHHHhcCCC-----C-CCceEE
Q 020071 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARD---G-NMPNLILAGPPGTGKTTSILALAHELLGPN-----Y-REAVME 81 (331)
Q Consensus 12 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~---~-~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~-~~~~~~ 81 (331)
..+|..+|+| ++++|+++.++.+..++.. + ..++++|+||+|+|||++++.+++.+.+.. . ...++.
T Consensus 10 ~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~ 86 (384)
T 2qby_B 10 KVFIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAY 86 (384)
T ss_dssp TTTTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEE
T ss_pred HhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEE
Confidence 4578999999 7899999999988877654 3 334589999999999999999999874321 1 456777
Q ss_pred eecCCCC-ChH-hHHHH-------------------HHHHHhcccCCCCCCceEEEEeCCCCCCHHH-HHH-HHHHHHHh
Q 020071 82 LNASDDR-GID-VVRNK-------------------IKMFAQKKVTLPPGKHKVVVLDEADSMTAGA-QQA-LRRTMEIY 138 (331)
Q Consensus 82 ~~~~~~~-~~~-~i~~~-------------------i~~~~~~~~~~~~~~~~vviide~d~l~~~~-~~~-Ll~~le~~ 138 (331)
+++.... ... .+... +..+.... ...+.+++|||+|.+.... ++. +..+++..
T Consensus 87 i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l----~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~ 162 (384)
T 2qby_B 87 VNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGT----RNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD 162 (384)
T ss_dssp EEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHH----SSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS
T ss_pred EECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHh----ccCCCEEEEECHHHhccCCCCceeHHHHhcCC
Confidence 7764322 111 11111 11111111 1222399999999987653 555 55555544
Q ss_pred cCCcEEEEeeCCC---CCCChhhhcc-cceeeecCCCHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHhcC---CCHHHH
Q 020071 139 SNSTRFALACNVS---SKIIEPIQSR-CAIVRFSRLSDEEILSRLMVVVQE--EKVPYVPEGLEAIIFTAD---GDMRQA 209 (331)
Q Consensus 139 ~~~~~~I~~~~~~---~~l~~~l~sr-~~~i~~~~~~~~~~~~~l~~~~~~--~~~~i~~~~~~~l~~~~~---g~~r~~ 209 (331)
.++.+|++++.. ..+.+.+.+| +..+.|+|++.+++.+++..++.. .+..+++++++.+++.++ ||+|.+
T Consensus 163 -~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a 241 (384)
T 2qby_B 163 -ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKA 241 (384)
T ss_dssp -SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHH
T ss_pred -cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHH
Confidence 678899999876 6788999999 478999999999999999998875 456789999999999998 999999
Q ss_pred HHHHHHHh---hCCCccchhhhhhhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc--
Q 020071 210 LNNLQATY---SGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYE-- 284 (331)
Q Consensus 210 ~~~l~~~~---~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~-- 284 (331)
++.++.+. .+...|+.+++.+++...... .+...+...+..+ ...+..+.. +....++...+..+++.+|
T Consensus 242 ~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~~---~~~~~~~~l~~~~-~~~l~al~~-~~~~~~~~~~~~~~~~~~g~~ 316 (384)
T 2qby_B 242 VNLLFRAAQLASGGGIIRKEHVDKAIVDYEQE---RLIEAVKALPFHY-KLALRSLIE-SEDVMSAHKMYTDLCNKFKQK 316 (384)
T ss_dssp HHHHHHHHHHTTSSSCCCHHHHHHHHHHHHHH---HHHHHHHSSCHHH-HHHHHHHHT-CCBHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCCCccCHHHHHHHHHHHhcc---hHHHHHHcCCHHH-HHHHHHHHH-hcccChHHHHHHHHHHHcCCC
Confidence 99998764 234578988888765543222 2333333334333 333444443 3332455556666677665
Q ss_pred -cChHhHHHHHHHHHH
Q 020071 285 -MAEHLKLEFMKEAGF 299 (331)
Q Consensus 285 -~~~~~~~~~~~~l~~ 299 (331)
.+.....+++..+.+
T Consensus 317 ~~~~~~~~~~l~~L~~ 332 (384)
T 2qby_B 317 PLSYRRFSDIISELDM 332 (384)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 334445555555543
No 25
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.88 E-value=2.8e-21 Score=175.59 Aligned_cols=188 Identities=22% Similarity=0.223 Sum_probs=149.0
Q ss_pred chhhhcCCCCCCccccCHHHHHHHHHHHHc------------CCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEE
Q 020071 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARD------------GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVME 81 (331)
Q Consensus 14 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 81 (331)
.|.++|+|..|++++|++.+++.+...+.. ....++|||||+|+|||++|+++++.+ +.+++.
T Consensus 104 ~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~-----~~~~~~ 178 (389)
T 3vfd_A 104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES-----NATFFN 178 (389)
T ss_dssp TTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT-----TCEEEE
T ss_pred hhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh-----cCcEEE
Confidence 689999999999999999999999888732 122459999999999999999999998 678899
Q ss_pred eecCCCCCh------HhHHHHHHHHHhcccCCCCCCceEEEEeCCCCC-----------CHHHHHHHHHHHHHh----cC
Q 020071 82 LNASDDRGI------DVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM-----------TAGAQQALRRTMEIY----SN 140 (331)
Q Consensus 82 ~~~~~~~~~------~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l-----------~~~~~~~Ll~~le~~----~~ 140 (331)
+++....+. ..+...+..+.. ....+|||||+|.+ ....++.|+..++.. +.
T Consensus 179 v~~~~l~~~~~g~~~~~~~~~~~~a~~-------~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 179 ISAASLTSKYVGEGEKLVRALFAVARE-------LQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp ECSCCC-------CHHHHHHHHHHHHH-------SSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred eeHHHhhccccchHHHHHHHHHHHHHh-------cCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 988765321 122333332222 23579999999988 344567788888743 45
Q ss_pred CcEEEEeeCCCCCCChhhhcccc-eeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 020071 141 STRFALACNVSSKIIEPIQSRCA-IVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNL 213 (331)
Q Consensus 141 ~~~~I~~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l 213 (331)
++++|.++|.+..+.+.+.+||. .+.|++|+.++...++...+...+..++++.+..|+..+.|..+..++.+
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 68889999999999999999995 68999999999999999999988999999999999999999777655555
No 26
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.88 E-value=6.3e-22 Score=174.43 Aligned_cols=203 Identities=22% Similarity=0.248 Sum_probs=154.3
Q ss_pred CCCCCchhhhcCCCCCC--------ccccCHHHHHHHHHHHH---------------cCCCCeEEEeCCCCccHHHHHHH
Q 020071 9 SAYDIPWVEKYRPTKVC--------DIVGNLDAVARLGIIAR---------------DGNMPNLILAGPPGTGKTTSILA 65 (331)
Q Consensus 9 ~~~~~~~~~~~~p~~~~--------~~ig~~~~~~~l~~~l~---------------~~~~~~~ll~G~~G~GKt~la~~ 65 (331)
.+...++.+.|++..++ +++|++.+++.+...+. .....+++|+||||+|||++|++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 7 APTSIDLRAEYEGSGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp SCSCCCHHHHHHHTTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHH
T ss_pred CCCCCCCChhhccccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHH
Confidence 34455677777776642 68999999998887765 22333599999999999999999
Q ss_pred HHHHhcCCCC--CCceEEeecCCCCC--hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCC---------CHHHHHHHH
Q 020071 66 LAHELLGPNY--REAVMELNASDDRG--IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM---------TAGAQQALR 132 (331)
Q Consensus 66 l~~~l~~~~~--~~~~~~~~~~~~~~--~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l---------~~~~~~~Ll 132 (331)
+++.+.+... ..+++.+++.+..+ .......+....... .+.+++|||+|.+ +...++.|+
T Consensus 87 la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~------~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll 160 (309)
T 3syl_A 87 MAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA------MGGVLFIDEAYYLYRPDNERDYGQEAIEILL 160 (309)
T ss_dssp HHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH------TTSEEEEETGGGSCCCC---CCTHHHHHHHH
T ss_pred HHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc------CCCEEEEEChhhhccCCCcccccHHHHHHHH
Confidence 9998855432 33677777654421 111111112211111 2469999999977 788899999
Q ss_pred HHHHHhcCCcEEEEeeCCCC-----CCChhhhccc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhc----
Q 020071 133 RTMEIYSNSTRFALACNVSS-----KIIEPIQSRC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTA---- 202 (331)
Q Consensus 133 ~~le~~~~~~~~I~~~~~~~-----~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~---- 202 (331)
+.+++.+.++++|++++... .+.+++++|| ..+.|++|+.+++..++...+.+.+..+++++++.++.+.
T Consensus 161 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~ 240 (309)
T 3syl_A 161 QVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRR 240 (309)
T ss_dssp HHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 99999888899999987532 3458999999 8899999999999999999999999999999999999863
Q ss_pred ----CCCHHHHHHHHHHHh
Q 020071 203 ----DGDMRQALNNLQATY 217 (331)
Q Consensus 203 ----~g~~r~~~~~l~~~~ 217 (331)
.||+|.+.+.++.+.
T Consensus 241 ~~~~~gn~r~l~~~l~~a~ 259 (309)
T 3syl_A 241 NQPHFANARSIRNALDRAR 259 (309)
T ss_dssp TSSSCCHHHHHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHH
Confidence 489999999998764
No 27
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.88 E-value=6.6e-21 Score=166.97 Aligned_cols=190 Identities=21% Similarity=0.190 Sum_probs=148.2
Q ss_pred chhhhcCCCCCCccccCHHHHHHHHHHHHc------------CCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEE
Q 020071 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARD------------GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVME 81 (331)
Q Consensus 14 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 81 (331)
.|.++++|..|++++|++.+++.+...+.. ....+++|+||+|+|||++|+++++.+ ..+++.
T Consensus 10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~-----~~~~~~ 84 (297)
T 3b9p_A 10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC-----SATFLN 84 (297)
T ss_dssp TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT-----TCEEEE
T ss_pred HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh-----CCCeEE
Confidence 477889999999999999999999888743 122349999999999999999999998 567888
Q ss_pred eecCCCCC------hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHHHhc-----
Q 020071 82 LNASDDRG------IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT-----------AGAQQALRRTMEIYS----- 139 (331)
Q Consensus 82 ~~~~~~~~------~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~-----------~~~~~~Ll~~le~~~----- 139 (331)
+++.+..+ ...++..+.... ...+.+++|||+|.+. ...++.|+..++..+
T Consensus 85 i~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 85 ISAASLTSKYVGDGEKLVRALFAVAR-------HMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp EESTTTSSSSCSCHHHHHHHHHHHHH-------HTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred eeHHHHhhcccchHHHHHHHHHHHHH-------HcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 88765422 122333333222 2346899999998873 345678888888765
Q ss_pred CCcEEEEeeCCCCCCChhhhccc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHH-HHHHH
Q 020071 140 NSTRFALACNVSSKIIEPIQSRC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQAL-NNLQA 215 (331)
Q Consensus 140 ~~~~~I~~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~-~~l~~ 215 (331)
..+.+|++||.+..+.+++.+|| ..+.+++|+.++...++...+.+.+..++++.++.+++.+.|..+..+ ++++.
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~ 235 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKD 235 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 35778888999999999999998 567899999999999999999888888999999999999999776555 44443
No 28
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.87 E-value=4.8e-21 Score=169.67 Aligned_cols=196 Identities=17% Similarity=0.154 Sum_probs=149.5
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHH----------cC-CC-CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceE
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIAR----------DG-NM-PNLILAGPPGTGKTTSILALAHELLGPNYREAVM 80 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~----------~~-~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~ 80 (331)
..|..++.+..|++++|++.+++.+...+. .+ .. .++|||||||+|||++|+++++.+ +.+++
T Consensus 6 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~-----~~~~~ 80 (322)
T 3eie_A 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA-----NSTFF 80 (322)
T ss_dssp CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH-----TCEEE
T ss_pred cceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH-----CCCEE
Confidence 357888999999999999999999998872 22 22 249999999999999999999998 67788
Q ss_pred EeecCCCC--ChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHHH---hcCCcEE
Q 020071 81 ELNASDDR--GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA-----------GAQQALRRTMEI---YSNSTRF 144 (331)
Q Consensus 81 ~~~~~~~~--~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~-----------~~~~~Ll~~le~---~~~~~~~ 144 (331)
.+++.+.. ........+........ ...+.+|+|||+|.+.. ..++.|+..++. ...++++
T Consensus 81 ~v~~~~l~~~~~g~~~~~~~~~f~~a~---~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 157 (322)
T 3eie_A 81 SVSSSDLVSKWMGESEKLVKQLFAMAR---ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 157 (322)
T ss_dssp EEEHHHHHTTTGGGHHHHHHHHHHHHH---HTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEE
T ss_pred EEchHHHhhcccchHHHHHHHHHHHHH---hcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEE
Confidence 88765421 11122222222222211 23467999999998853 346788888874 3456788
Q ss_pred EEeeCCCCCCChhhhccc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Q 020071 145 ALACNVSSKIIEPIQSRC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG-DMRQALNNLQAT 216 (331)
Q Consensus 145 I~~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~~~~~l~~~ 216 (331)
|.+||.+..+.+++++|| ..+.+++|+.++..++++..+...+..+++..++.|++.+.| +.+.+.++++.+
T Consensus 158 i~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a 231 (322)
T 3eie_A 158 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDA 231 (322)
T ss_dssp EEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHH
T ss_pred EEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 889999999999999998 567999999999999999999888888899999999999987 565666665543
No 29
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.87 E-value=6.6e-21 Score=172.74 Aligned_cols=275 Identities=17% Similarity=0.150 Sum_probs=178.6
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHc---CC-CCeEEEeCCCCccHHHHHHHHHHHhcCCCC-CCceEEeecCCC
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARD---GN-MPNLILAGPPGTGKTTSILALAHELLGPNY-REAVMELNASDD 87 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~---~~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-~~~~~~~~~~~~ 87 (331)
.+|..+|.| ++++|++..++.+..++.. +. ..+++|+||+|+|||++++.+++.+.+... +..++.+++...
T Consensus 11 ~~l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 11 EYLLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp GGGSSSCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred hhCCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 356667777 6789999999999988874 33 334899999999999999999998743321 344566654311
Q ss_pred C----------------------ChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC----HHHHHHHHHHHHH-hcC
Q 020071 88 R----------------------GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT----AGAQQALRRTMEI-YSN 140 (331)
Q Consensus 88 ~----------------------~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~----~~~~~~Ll~~le~-~~~ 140 (331)
. ......+.+...... .+.+.+++|||++.+. .+....|++.++. ...
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~-----~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~ 162 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRD-----YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKS 162 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHT-----CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC-
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc-----cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCC
Confidence 1 112222222222221 2347899999999885 3455666666654 345
Q ss_pred CcEEEEeeCCC---CCCChhhhccc--ceeeecCCCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHhcC---CCHHHHH
Q 020071 141 STRFALACNVS---SKIIEPIQSRC--AIVRFSRLSDEEILSRLMVVVQEE--KVPYVPEGLEAIIFTAD---GDMRQAL 210 (331)
Q Consensus 141 ~~~~I~~~~~~---~~l~~~l~sr~--~~i~~~~~~~~~~~~~l~~~~~~~--~~~i~~~~~~~l~~~~~---g~~r~~~ 210 (331)
++.+|++++.. ..+.+.+.+|+ ..+.|+|++.+++.+++..++... ...+++++++.+++.++ ||+|.++
T Consensus 163 ~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~ 242 (386)
T 2qby_A 163 KISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRAL 242 (386)
T ss_dssp -EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred eEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 67888888876 46778899998 689999999999999999887642 35789999999999988 9999999
Q ss_pred HHHHHHh-----hCCCccchhhhhhhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCC---HHHHHHHHHHH
Q 020071 211 NNLQATY-----SGFRFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLY---DLGYS---PTDIITTLFRI 279 (331)
Q Consensus 211 ~~l~~~~-----~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~---~~g~~---~~~i~~~l~~~ 279 (331)
+.++.+. .+...|+.+++..++.....+ .+...+...... ...++..+. ..|.+ ..+++..+..+
T Consensus 243 ~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~---~~~~~~~~l~~~-~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~ 318 (386)
T 2qby_A 243 DLLRVSGEIAERMKDTKVKEEYVYMAKEEIERD---RVRDIILTLPFH-SKLVLMAVVSISSEENVVSTTGAVYETYLNI 318 (386)
T ss_dssp HHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHH---HHHHHHHTSCHH-HHHHHHHHHHHC-----CEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhc---hHHHHHHcCCHH-HHHHHHHHHHHHhcCCCceeHHHHHHHHHHH
Confidence 9887653 245579999888765442222 222233222222 223333332 23433 36666766777
Q ss_pred HHhcccC---hHhHHHHHHHHHH
Q 020071 280 IKNYEMA---EHLKLEFMKEAGF 299 (331)
Q Consensus 280 ~~~~~~~---~~~~~~~~~~l~~ 299 (331)
+..++.+ ......+++.+.+
T Consensus 319 ~~~~g~~~~~~~~~~~~l~~L~~ 341 (386)
T 2qby_A 319 CKKLGVEAVTQRRVSDIINELDM 341 (386)
T ss_dssp HHHHTCCCCCHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCHHHHHHHHHHHHh
Confidence 7766533 3555566665544
No 30
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.86 E-value=5e-21 Score=171.53 Aligned_cols=191 Identities=18% Similarity=0.166 Sum_probs=141.9
Q ss_pred chhhhcCCCCCCccccCHHHHHHHHHHHHc-----------CCCC-eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEE
Q 020071 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARD-----------GNMP-NLILAGPPGTGKTTSILALAHELLGPNYREAVME 81 (331)
Q Consensus 14 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 81 (331)
.|..++.+.+|++++|++.+++.|...+.. ...+ ++|||||+|+|||++|+++++.+ +.+++.
T Consensus 40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~-----~~~~~~ 114 (355)
T 2qp9_X 40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA-----NSTFFS 114 (355)
T ss_dssp -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH-----TCEEEE
T ss_pred hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCCEEE
Confidence 466788899999999999999999888731 1222 39999999999999999999998 667777
Q ss_pred eecCCCC------ChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHHH---hcCC
Q 020071 82 LNASDDR------GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA-----------GAQQALRRTMEI---YSNS 141 (331)
Q Consensus 82 ~~~~~~~------~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~-----------~~~~~Ll~~le~---~~~~ 141 (331)
+++.+.. ....++..+.... ...+.||||||+|.+.. ...+.|+..++. .+.+
T Consensus 115 v~~~~l~~~~~g~~~~~~~~~f~~a~-------~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 115 VSSSDLVSKWMGESEKLVKQLFAMAR-------ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp EEHHHHHSCC---CHHHHHHHHHHHH-------HTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred eeHHHHhhhhcchHHHHHHHHHHHHH-------HcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 7764321 1122333333222 23468999999999863 346788888874 3467
Q ss_pred cEEEEeeCCCCCCChhhhccc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Q 020071 142 TRFALACNVSSKIIEPIQSRC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG-DMRQALNNLQAT 216 (331)
Q Consensus 142 ~~~I~~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~~~~~l~~~ 216 (331)
+++|++||.+..+.+++++|| ..+.+++|+.++...+++..+...+..+++..++.|++.+.| +.+.+.++++.+
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A 264 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDA 264 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 888889999999999999999 668999999999999999998888777899999999999988 565666665543
No 31
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.86 E-value=3.6e-21 Score=177.05 Aligned_cols=212 Identities=16% Similarity=0.190 Sum_probs=158.3
Q ss_pred hcCCC-CCCccc-c--CHHHHHHHHHHHHcCC-CCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHh
Q 020071 18 KYRPT-KVCDIV-G--NLDAVARLGIIARDGN-MPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDV 92 (331)
Q Consensus 18 ~~~p~-~~~~~i-g--~~~~~~~l~~~l~~~~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 92 (331)
..+|. +|++++ | +..+...+........ .++++||||+|+|||++++++++.+.+...+..++.+++... ...
T Consensus 97 ~l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~--~~~ 174 (440)
T 2z4s_A 97 PLNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF--LND 174 (440)
T ss_dssp CCCTTCSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH--HHH
T ss_pred CCCCCCChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH--HHH
Confidence 34555 899988 5 4555666777766643 445999999999999999999998865444556777765432 111
Q ss_pred HHHHHH-----HHHhcccCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHHHhc-CCcEEEEeeCCC-C---CCChhhhc
Q 020071 93 VRNKIK-----MFAQKKVTLPPGKHKVVVLDEADSMTA--GAQQALRRTMEIYS-NSTRFALACNVS-S---KIIEPIQS 160 (331)
Q Consensus 93 i~~~i~-----~~~~~~~~~~~~~~~vviide~d~l~~--~~~~~Ll~~le~~~-~~~~~I~~~~~~-~---~l~~~l~s 160 (331)
+...+. .+.. .. ..+..+++|||++.+.. ..++.|+.+++... .+..+|++++.+ . .+.+.+.+
T Consensus 175 ~~~~~~~~~~~~~~~-~~---~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s 250 (440)
T 2z4s_A 175 LVDSMKEGKLNEFRE-KY---RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS 250 (440)
T ss_dssp HHHHHHTTCHHHHHH-HH---TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH
T ss_pred HHHHHHcccHHHHHH-Hh---cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh
Confidence 111111 1111 00 11467999999999976 67889999988643 456677777764 2 37899999
Q ss_pred cc---ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHh----hCCCccchhhhhhhcC
Q 020071 161 RC---AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATY----SGFRFVNQENVFKVCD 233 (331)
Q Consensus 161 r~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~----~~~~~i~~~~v~~~~~ 233 (331)
|| .++.+.||+.++...++...+...++.++++++++|+..++||+|.+.+.++.+. ..+..||.+++.+++.
T Consensus 251 R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~ 330 (440)
T 2z4s_A 251 RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLK 330 (440)
T ss_dssp HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTS
T ss_pred hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 98 6899999999999999999999899999999999999999999999999998663 2345799999988776
Q ss_pred CC
Q 020071 234 QP 235 (331)
Q Consensus 234 ~~ 235 (331)
..
T Consensus 331 ~~ 332 (440)
T 2z4s_A 331 DF 332 (440)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 32
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.85 E-value=8.9e-21 Score=166.98 Aligned_cols=203 Identities=19% Similarity=0.246 Sum_probs=146.5
Q ss_pred CccccCHHHHHHHHHHHHc--------------CCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCC-
Q 020071 25 CDIVGNLDAVARLGIIARD--------------GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRG- 89 (331)
Q Consensus 25 ~~~ig~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~- 89 (331)
++++|++.++..+...+.. ....+++|+||+|+|||++|+.+++.+ +.+++.+++.....
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l-----~~~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA-----NAPFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH-----TCCEEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEcchhcccC
Confidence 3589999999999888765 223459999999999999999999998 55677777654321
Q ss_pred -------hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHH------------HHHHHHHHHHh----------cC
Q 020071 90 -------IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGA------------QQALRRTMEIY----------SN 140 (331)
Q Consensus 90 -------~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~------------~~~Ll~~le~~----------~~ 140 (331)
...+.+....... ... ....+.+++|||+|.++... ++.|++++++. +.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~ 167 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGG-AID-AVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTD 167 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTT-CHH-HHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECT
T ss_pred CccCccHHHHHHHHHHHhhH-HHh-hccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCC
Confidence 1123333221100 000 00136799999999997654 88999999963 34
Q ss_pred CcEEEEee----CCCCCCChhhhcccc-eeeecCCCHHHHHHHHHH-----------HHHhcC--CCCCHHHHHHHHHhc
Q 020071 141 STRFALAC----NVSSKIIEPIQSRCA-IVRFSRLSDEEILSRLMV-----------VVQEEK--VPYVPEGLEAIIFTA 202 (331)
Q Consensus 141 ~~~~I~~~----~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~-----------~~~~~~--~~i~~~~~~~l~~~~ 202 (331)
++.+|+++ +.+..+.+++.+||. .+.|+||+.+++..+++. .+...+ +.+++++++.|++.+
T Consensus 168 ~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 247 (310)
T 1ofh_A 168 HILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAA 247 (310)
T ss_dssp TCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHH
T ss_pred cEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHh
Confidence 67777774 355678899999996 589999999999999883 233344 368999999999988
Q ss_pred --------CCCHHHHHHHHHHHh--------hCCC---ccchhhhhhhcCC
Q 020071 203 --------DGDMRQALNNLQATY--------SGFR---FVNQENVFKVCDQ 234 (331)
Q Consensus 203 --------~g~~r~~~~~l~~~~--------~~~~---~i~~~~v~~~~~~ 234 (331)
+||+|.+.+.++.+. ...+ .|+.+++.+++..
T Consensus 248 ~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 248 FRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred hhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 799999999998753 1111 3888888776654
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.85 E-value=2.4e-20 Score=167.34 Aligned_cols=194 Identities=18% Similarity=0.155 Sum_probs=146.9
Q ss_pred hhhhcCCCCCCccccCHHHHHHHHHHHHc------------CCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEe
Q 020071 15 WVEKYRPTKVCDIVGNLDAVARLGIIARD------------GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMEL 82 (331)
Q Consensus 15 ~~~~~~p~~~~~~ig~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 82 (331)
+.++++|..|++++|++.+++.+...+.. ....++||+||+|+|||++|+++++.+ +.+++.+
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~-----~~~~~~i 148 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS-----GATFFSI 148 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT-----TCEEEEE
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc-----CCeEEEE
Confidence 45678899999999999999999888753 223349999999999999999999998 6678888
Q ss_pred ecCCCCCh--HhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHHH----hcCCcEEE
Q 020071 83 NASDDRGI--DVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT-----------AGAQQALRRTMEI----YSNSTRFA 145 (331)
Q Consensus 83 ~~~~~~~~--~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~-----------~~~~~~Ll~~le~----~~~~~~~I 145 (331)
++.+..+. ......+........ ...+.+|||||+|.+. ...++.|+..++. ++.++++|
T Consensus 149 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI 225 (357)
T 3d8b_A 149 SASSLTSKWVGEGEKMVRALFAVAR---CQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVV 225 (357)
T ss_dssp EGGGGCCSSTTHHHHHHHHHHHHHH---HTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEE
T ss_pred ehHHhhccccchHHHHHHHHHHHHH---hcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEE
Confidence 87654221 111222222211111 2346899999998773 2346677777773 34577888
Q ss_pred EeeCCCCCCChhhhcccc-eeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Q 020071 146 LACNVSSKIIEPIQSRCA-IVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG-DMRQALNNLQAT 216 (331)
Q Consensus 146 ~~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~~~~~l~~~ 216 (331)
++||.+..+.+++++||. .+.+++|+.++..+++...+...+..++++.++.+++.+.| +.+.+..+++.+
T Consensus 226 ~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a 298 (357)
T 3d8b_A 226 GATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREA 298 (357)
T ss_dssp EEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred EecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 899999999999999996 67999999999999999999888888999999999999988 555555555543
No 34
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.85 E-value=5.2e-20 Score=157.83 Aligned_cols=204 Identities=20% Similarity=0.195 Sum_probs=149.0
Q ss_pred chhhhcCCCCCCccccCHHHHHHHHHHHHc-----------CCCC-eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEE
Q 020071 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARD-----------GNMP-NLILAGPPGTGKTTSILALAHELLGPNYREAVME 81 (331)
Q Consensus 14 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 81 (331)
+|.+++++..|++++|++.+++.+...+.. ...+ +++|+||+|+|||++|+++++.+ +.+++.
T Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~-----~~~~~~ 75 (257)
T 1lv7_A 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA-----KVPFFT 75 (257)
T ss_dssp CEEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH-----TCCEEE
T ss_pred CCCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc-----CCCEEE
Confidence 489999999999999999999988766542 1223 49999999999999999999988 556788
Q ss_pred eecCCCC------ChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHHH--hc
Q 020071 82 LNASDDR------GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA--------------GAQQALRRTMEI--YS 139 (331)
Q Consensus 82 ~~~~~~~------~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~--------------~~~~~Ll~~le~--~~ 139 (331)
+++.+.. +...++..+.... ...+.+++|||+|.+.. ...+.++..++. .+
T Consensus 76 i~~~~~~~~~~~~~~~~~~~~~~~a~-------~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 76 ISGSDFVEMFVGVGASRVRDMFEQAK-------KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp ECSCSSTTSCCCCCHHHHHHHHHHHH-------TTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred EeHHHHHHHhhhhhHHHHHHHHHHHH-------HcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 8776542 1223444444332 22357999999976532 345566666764 34
Q ss_pred CCcEEEEeeCCCCCCChhhhc--cc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHhcCC-CHHHHHHHHH
Q 020071 140 NSTRFALACNVSSKIIEPIQS--RC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVP-EGLEAIIFTADG-DMRQALNNLQ 214 (331)
Q Consensus 140 ~~~~~I~~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~-~~~~~l~~~~~g-~~r~~~~~l~ 214 (331)
.++++|+++|.+..+.+.+.+ |+ ..+.+++|+.++..++++..+++.+ +++ .....++..+.| +.|.+.+.++
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~--l~~~~~~~~la~~~~G~~~~dl~~l~~ 226 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIARGTPGFSGADLANLVN 226 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC--CCccccHHHHHHHcCCCCHHHHHHHHH
Confidence 567888899999999999987 65 4578999999999999988776543 333 336778888999 9999998887
Q ss_pred HHh-----hCCCccchhhhhhh
Q 020071 215 ATY-----SGFRFVNQENVFKV 231 (331)
Q Consensus 215 ~~~-----~~~~~i~~~~v~~~ 231 (331)
.+. .+...|+.+++.++
T Consensus 227 ~a~~~a~~~~~~~i~~~~~~~a 248 (257)
T 1lv7_A 227 EAALFAARGNKRVVSMVEFEKA 248 (257)
T ss_dssp HHHHHHHHTTCSSBCHHHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHH
Confidence 653 23456777777653
No 35
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.85 E-value=6.4e-20 Score=163.15 Aligned_cols=208 Identities=20% Similarity=0.169 Sum_probs=153.0
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHh
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDV 92 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 92 (331)
.+|.++++|..+++++|+++++..+...+..+. +++|+||||+|||++|+++++.+ +.++..+++........
T Consensus 15 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~-----~~~~~~i~~~~~~~~~~ 87 (331)
T 2r44_A 15 RNKIKEVIDEVGKVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTM-----DLDFHRIQFTPDLLPSD 87 (331)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHT-----TCCEEEEECCTTCCHHH
T ss_pred HHHHHHHHHHhccceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHh-----CCCeEEEecCCCCChhh
Confidence 379999999999999999999999988888764 69999999999999999999988 44566666543222111
Q ss_pred HHHHHHHHH----hcccCCCCC--CceEEEEeCCCCCCHHHHHHHHHHHHHh-----------cCCcEEEEeeCCCC---
Q 020071 93 VRNKIKMFA----QKKVTLPPG--KHKVVVLDEADSMTAGAQQALRRTMEIY-----------SNSTRFALACNVSS--- 152 (331)
Q Consensus 93 i~~~i~~~~----~~~~~~~~~--~~~vviide~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~~~~~--- 152 (331)
.+.... ...+....+ ...+++|||++.++...++.|++.+++. +..+.+|.++|...
T Consensus 88 ---l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~ 164 (331)
T 2r44_A 88 ---LIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEG 164 (331)
T ss_dssp ---HHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSC
T ss_pred ---cCCceeecCCCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccC
Confidence 110000 000000001 1369999999999999999999999963 44566676666432
Q ss_pred --CCChhhhcccce-eeecCCCHHHHHHHHHHHHHhc----------------------CCCCCHHHHHHHHHhc-----
Q 020071 153 --KIIEPIQSRCAI-VRFSRLSDEEILSRLMVVVQEE----------------------KVPYVPEGLEAIIFTA----- 202 (331)
Q Consensus 153 --~l~~~l~sr~~~-i~~~~~~~~~~~~~l~~~~~~~----------------------~~~i~~~~~~~l~~~~----- 202 (331)
.+.+++.+||.. +.+.+|+.++..++++..+... ++.+++++++++++.+
T Consensus 165 ~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~ 244 (331)
T 2r44_A 165 TYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRF 244 (331)
T ss_dssp CCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHS
T ss_pred cccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhc
Confidence 388999999985 8999999999999998876542 6778999999888654
Q ss_pred ---------------CCCHHHHHHHHHHHh-----hCCCccchhhhhh
Q 020071 203 ---------------DGDMRQALNNLQATY-----SGFRFVNQENVFK 230 (331)
Q Consensus 203 ---------------~g~~r~~~~~l~~~~-----~~~~~i~~~~v~~ 230 (331)
+.++|.+.+.++.+. .+...|+.+++.+
T Consensus 245 ~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~ 292 (331)
T 2r44_A 245 PAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKE 292 (331)
T ss_dssp GGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHH
T ss_pred cccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 226999888886542 3455677776655
No 36
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.85 E-value=2.6e-19 Score=153.83 Aligned_cols=198 Identities=17% Similarity=0.095 Sum_probs=136.0
Q ss_pred CCCCCccccCHHHHHHHHHHHHc------------CCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC
Q 020071 21 PTKVCDIVGNLDAVARLGIIARD------------GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR 88 (331)
Q Consensus 21 p~~~~~~ig~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (331)
+.+|++++|++.+++.+.+.+.. ....+++|+||+|+|||++|+++++.+ +.+++.+++.+..
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~-----~~~~~~~~~~~~~ 76 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA-----QVPFLAMAGAEFV 76 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH-----TCCEEEEETTTTS
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCEEEechHHHH
Confidence 45899999999999988777542 122348999999999999999999998 6678888876542
Q ss_pred C------hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC------------HHHHHHHHHHHH---H--hcCCcEEE
Q 020071 89 G------IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT------------AGAQQALRRTME---I--YSNSTRFA 145 (331)
Q Consensus 89 ~------~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~------------~~~~~~Ll~~le---~--~~~~~~~I 145 (331)
. ...+...+..+.. ..+.+++|||+|.+. ...+..+..+++ . .+.++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~a~~-------~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi 149 (262)
T 2qz4_A 77 EVIGGLGAARVRSLFKEARA-------RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVL 149 (262)
T ss_dssp SSSTTHHHHHHHHHHHHHHH-------TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEE
T ss_pred hhccChhHHHHHHHHHHHHh-------cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEE
Confidence 2 1223333333221 236799999999983 223344444444 3 34567888
Q ss_pred EeeCCCCCCChhhhc--cc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhcCCC-HHHHHHHHHHHh---
Q 020071 146 LACNVSSKIIEPIQS--RC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEG-LEAIIFTADGD-MRQALNNLQATY--- 217 (331)
Q Consensus 146 ~~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~~~g~-~r~~~~~l~~~~--- 217 (331)
+++|.+..+.+++.+ |+ ..+.+++|+.++..++++..+...+...+.+. ...++..+.|. .+.+.+.++.++
T Consensus 150 ~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a 229 (262)
T 2qz4_A 150 ASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHA 229 (262)
T ss_dssp EEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC-
T ss_pred ecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 889988888899988 88 57899999999999999999988888777664 57888888774 556666666543
Q ss_pred --hCCCccchhhhhh
Q 020071 218 --SGFRFVNQENVFK 230 (331)
Q Consensus 218 --~~~~~i~~~~v~~ 230 (331)
.+...|+.+++.+
T Consensus 230 ~~~~~~~i~~~d~~~ 244 (262)
T 2qz4_A 230 AREGHTSVHTLNFEY 244 (262)
T ss_dssp -------CCBCCHHH
T ss_pred HHcCCCCCCHHHHHH
Confidence 2234566666554
No 37
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.85 E-value=3.9e-19 Score=157.08 Aligned_cols=188 Identities=17% Similarity=0.158 Sum_probs=143.2
Q ss_pred hcCCCCCCccccCHHHHHHHHHHHHc----------C-CC-CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecC
Q 020071 18 KYRPTKVCDIVGNLDAVARLGIIARD----------G-NM-PNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNAS 85 (331)
Q Consensus 18 ~~~p~~~~~~ig~~~~~~~l~~~l~~----------~-~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 85 (331)
.+.+.+|+|++|++.+++.|...+.. + .. .++|||||||+|||++|+++++.+. ..+++.++++
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~----~~~~~~i~~~ 80 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSISSS 80 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT----SCEEEEEECC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC----CCcEEEEEhH
Confidence 45567999999999999999888742 1 22 2499999999999999999999873 3467777766
Q ss_pred CCCC------hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHHH---hcCCcEEE
Q 020071 86 DDRG------IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT-----------AGAQQALRRTMEI---YSNSTRFA 145 (331)
Q Consensus 86 ~~~~------~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~-----------~~~~~~Ll~~le~---~~~~~~~I 145 (331)
+..+ ...++..+..... ..+.+|||||+|.+. ....+.|+..++. ++.++.+|
T Consensus 81 ~l~~~~~g~~~~~~~~lf~~a~~-------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI 153 (322)
T 1xwi_A 81 DLVSKWLGESEKLVKNLFQLARE-------NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVL 153 (322)
T ss_dssp SSCCSSCCSCHHHHHHHHHHHHH-------TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEE
T ss_pred HHHhhhhhHHHHHHHHHHHHHHh-------cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEE
Confidence 5421 2234444433322 346799999999882 2345677777775 34678888
Q ss_pred EeeCCCCCCChhhhccc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCC-HHHHHHHHHHH
Q 020071 146 LACNVSSKIIEPIQSRC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGD-MRQALNNLQAT 216 (331)
Q Consensus 146 ~~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~-~r~~~~~l~~~ 216 (331)
.+||.+..+.+++++|+ ..+.+++|+.++...+++..+...+..+++..++.|++.+.|- .+.+.++++.+
T Consensus 154 ~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A 226 (322)
T 1xwi_A 154 GATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDA 226 (322)
T ss_dssp EEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred EecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 89999999999999999 5689999999999999999988877778999999999999874 55555555443
No 38
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.2e-19 Score=160.24 Aligned_cols=198 Identities=18% Similarity=0.181 Sum_probs=141.7
Q ss_pred CCCCCCccccCHHHHHHHHHHHHc-----------CC-CCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCC
Q 020071 20 RPTKVCDIVGNLDAVARLGIIARD-----------GN-MPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASD 86 (331)
Q Consensus 20 ~p~~~~~~ig~~~~~~~l~~~l~~-----------~~-~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (331)
...+|+|+.|.+++++.|+..+.- |. .|. +|||||||||||++|+++|.++ +.+++.+++++
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~-----~~~f~~v~~s~ 217 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT-----DCKFIRVSGAE 217 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH-----TCEEEEEEGGG
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh-----CCCceEEEhHH
Confidence 345899999999999999877642 32 233 9999999999999999999999 78899888765
Q ss_pred CCC------hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHHH--hcCCcEE
Q 020071 87 DRG------IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA--------------GAQQALRRTMEI--YSNSTRF 144 (331)
Q Consensus 87 ~~~------~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~--------------~~~~~Ll~~le~--~~~~~~~ 144 (331)
..+ ...+++.+..+... .+.+|||||+|.+.. ...+.|+..|+. ...++.+
T Consensus 218 l~sk~vGese~~vr~lF~~Ar~~-------aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~v 290 (405)
T 4b4t_J 218 LVQKYIGEGSRMVRELFVMAREH-------APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKI 290 (405)
T ss_dssp GSCSSTTHHHHHHHHHHHHHHHT-------CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEE
T ss_pred hhccccchHHHHHHHHHHHHHHh-------CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEE
Confidence 422 23455555444432 367999999998842 124566666763 3456788
Q ss_pred EEeeCCCCCCChhhhc--cc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH---h
Q 020071 145 ALACNVSSKIIEPIQS--RC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG-DMRQALNNLQAT---Y 217 (331)
Q Consensus 145 I~~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~~~~~l~~~---~ 217 (331)
|.+||.++.+.+++++ |+ ..+.|++|+.++..++++..+++.++. ++-.++.|++.+.| +...+.+.+..+ +
T Consensus 291 IaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G~SGADi~~l~~eA~~~A 369 (405)
T 4b4t_J 291 IMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNGCSGADVKGVCTEAGMYA 369 (405)
T ss_dssp EEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred EeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999987 76 468999999999999998877655432 22247888988866 444444444332 1
Q ss_pred --hCCCccchhhhhh
Q 020071 218 --SGFRFVNQENVFK 230 (331)
Q Consensus 218 --~~~~~i~~~~v~~ 230 (331)
.+...|+.+++..
T Consensus 370 ir~~~~~vt~~Df~~ 384 (405)
T 4b4t_J 370 LRERRIHVTQEDFEL 384 (405)
T ss_dssp HHTTCSBCCHHHHHH
T ss_pred HHcCCCCcCHHHHHH
Confidence 3445567666544
No 39
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.84 E-value=1.1e-19 Score=167.43 Aligned_cols=192 Identities=17% Similarity=0.163 Sum_probs=144.9
Q ss_pred chhhhcCCCCCCccccCHHHHHHHHHHHHc-----------CCC-CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEE
Q 020071 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARD-----------GNM-PNLILAGPPGTGKTTSILALAHELLGPNYREAVME 81 (331)
Q Consensus 14 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~-----------~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 81 (331)
-+...+.+..|++++|++.+++.|...+.. ... .++|||||||+|||++|+++++.+. ..+++.
T Consensus 123 ~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~----~~~~~~ 198 (444)
T 2zan_A 123 AIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFS 198 (444)
T ss_dssp -CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC----SSEEEE
T ss_pred ceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC----CCCEEE
Confidence 345567888999999999999999988731 122 3499999999999999999999873 346777
Q ss_pred eecCCCCC------hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHHH---hcCC
Q 020071 82 LNASDDRG------IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT-----------AGAQQALRRTMEI---YSNS 141 (331)
Q Consensus 82 ~~~~~~~~------~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~-----------~~~~~~Ll~~le~---~~~~ 141 (331)
+++++..+ ...++..+..+.. ..+.||||||+|.+. ....+.|+..++. ++.+
T Consensus 199 v~~~~l~~~~~g~~~~~~~~~f~~a~~-------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 199 ISSSDLVSKWLGESEKLVKNLFQLARE-------NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp ECCC---------CCCTHHHHHHHHHH-------SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred EeHHHHHhhhcchHHHHHHHHHHHHHH-------cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 77665421 1233444433322 246799999999883 2456777777765 3567
Q ss_pred cEEEEeeCCCCCCChhhhcccc-eeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Q 020071 142 TRFALACNVSSKIIEPIQSRCA-IVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG-DMRQALNNLQAT 216 (331)
Q Consensus 142 ~~~I~~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~~~~~l~~~ 216 (331)
+.||++||.+..+.+++++||. .+.+++|+.++...+++..+...+..+++..++.|++.+.| +.+.+.++++.+
T Consensus 272 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a 348 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDA 348 (444)
T ss_dssp CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 8899999999999999999995 78999999999999999988877777899999999999988 555655555543
No 40
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.84 E-value=8.9e-20 Score=158.78 Aligned_cols=204 Identities=18% Similarity=0.165 Sum_probs=143.4
Q ss_pred cCCCCCCccccCHHHHHHHHHHHHc-------------CCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecC
Q 020071 19 YRPTKVCDIVGNLDAVARLGIIARD-------------GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNAS 85 (331)
Q Consensus 19 ~~p~~~~~~ig~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 85 (331)
..+..|++++|++.+++.+...+.. ....+++|+||+|+|||++|+++++.+ +.+++.+++.
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~-----~~~~~~v~~~ 85 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET-----NATFIRVVGS 85 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT-----TCEEEEEEGG
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEehH
Confidence 3456899999999999999888754 233349999999999999999999998 6677777765
Q ss_pred CCCC--hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCC-----------CHHHHHHHHHHHHH-----hcCCcEEEEe
Q 020071 86 DDRG--IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM-----------TAGAQQALRRTMEI-----YSNSTRFALA 147 (331)
Q Consensus 86 ~~~~--~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l-----------~~~~~~~Ll~~le~-----~~~~~~~I~~ 147 (331)
+..+ .......+........ ...+.+++|||+|.+ ....+..|..+++. ...++++|++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~t 162 (285)
T 3h4m_A 86 ELVKKFIGEGASLVKDIFKLAK---EKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGA 162 (285)
T ss_dssp GGCCCSTTHHHHHHHHHHHHHH---HTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEE
T ss_pred HHHHhccchHHHHHHHHHHHHH---HcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEe
Confidence 4321 1112222222211111 233579999999987 44556667666654 3357888999
Q ss_pred eCCCCCCChhhhc--ccc-eeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH---h--h
Q 020071 148 CNVSSKIIEPIQS--RCA-IVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG-DMRQALNNLQAT---Y--S 218 (331)
Q Consensus 148 ~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~~~~~l~~~---~--~ 218 (331)
+|.+..+.+.+.+ |+. .+.+++|+.++..++++..+...+.. ++..+..++..+.| +.+.+.+.++.+ + .
T Consensus 163 tn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~ 241 (285)
T 3h4m_A 163 TNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRE 241 (285)
T ss_dssp CSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999998 774 68999999999999999887765543 23346778888876 555655555443 2 3
Q ss_pred CCCccchhhhhhh
Q 020071 219 GFRFVNQENVFKV 231 (331)
Q Consensus 219 ~~~~i~~~~v~~~ 231 (331)
+...|+.+++.++
T Consensus 242 ~~~~I~~~d~~~a 254 (285)
T 3h4m_A 242 LRDYVTMDDFRKA 254 (285)
T ss_dssp TCSSBCHHHHHHH
T ss_pred ccCcCCHHHHHHH
Confidence 4556888877653
No 41
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.83 E-value=3.2e-20 Score=164.59 Aligned_cols=186 Identities=15% Similarity=0.160 Sum_probs=139.8
Q ss_pred CCCCccc---cCHHHHHHHHHHHHcCC--CCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHH
Q 020071 22 TKVCDIV---GNLDAVARLGIIARDGN--MPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNK 96 (331)
Q Consensus 22 ~~~~~~i---g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 96 (331)
.+|++++ ++......+...+.... .++++||||+|+|||++++.+++.+... +.+++.+++.+. ...+...
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~~~--~~~~~~~ 83 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSADDF--AQAMVEH 83 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHHHH--HHHHHHH
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHHHH--HHHHHHH
Confidence 3788887 46666777888777653 3459999999999999999999988544 456677765432 1111111
Q ss_pred HH-----HHHhcccCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHHHh-cCCcEEEEeeCCC-C---CCChhhhccc--
Q 020071 97 IK-----MFAQKKVTLPPGKHKVVVLDEADSMTA--GAQQALRRTMEIY-SNSTRFALACNVS-S---KIIEPIQSRC-- 162 (331)
Q Consensus 97 i~-----~~~~~~~~~~~~~~~vviide~d~l~~--~~~~~Ll~~le~~-~~~~~~I~~~~~~-~---~l~~~l~sr~-- 162 (331)
+. .+... .....+++|||++.+.. ..++.++.+++.. ..+.++|++++.. . .+.+.+.+|+
T Consensus 84 ~~~~~~~~~~~~-----~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~ 158 (324)
T 1l8q_A 84 LKKGTINEFRNM-----YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEG 158 (324)
T ss_dssp HHHTCHHHHHHH-----HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHT
T ss_pred HHcCcHHHHHHH-----hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccC
Confidence 11 11110 12357999999999976 6788888888753 3445677776653 2 6889999998
Q ss_pred -ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 020071 163 -AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYS 218 (331)
Q Consensus 163 -~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 218 (331)
.++.|+| +.++...++...+...++.++++++++|++.+ ||+|.+.+.++.+..
T Consensus 159 ~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~ 213 (324)
T 1l8q_A 159 GILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKL 213 (324)
T ss_dssp SEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHH
T ss_pred ceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHHHHH
Confidence 7899999 99999999999999999999999999999999 999999999987653
No 42
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.82 E-value=2.4e-20 Score=172.96 Aligned_cols=195 Identities=16% Similarity=0.238 Sum_probs=145.5
Q ss_pred CCCCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCC-----CCCceEEeec
Q 020071 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN-----YREAVMELNA 84 (331)
Q Consensus 10 ~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~ 84 (331)
....+|+++++|..|++++|++..+..+...+.....+|+||+||||+|||++|+.+++.+.+.. .+..++.+++
T Consensus 165 ~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 244 (468)
T 3pxg_A 165 SLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (468)
T ss_dssp SSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred HHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence 45668999999999999999999999999999988878899999999999999999999986532 2445666665
Q ss_pred CCC-CC--hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCC-----CCCh
Q 020071 85 SDD-RG--IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSS-----KIIE 156 (331)
Q Consensus 85 ~~~-~~--~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~-----~l~~ 156 (331)
... .+ ...+...+..+.. .++.++||| .+.+.++.|+..++. ..+++|.++|... .+.+
T Consensus 245 ~~~~~g~~e~~~~~~~~~~~~-------~~~~iLfiD----~~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~~ 311 (468)
T 3pxg_A 245 GTKYRGEFEDRLKKVMDEIRQ-------AGNIILFID----AAIDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDA 311 (468)
T ss_dssp --------CTTHHHHHHHHHT-------CCCCEEEEC----C--------CCCTTS--SSCEEEEECCTTTTHHHHTTCS
T ss_pred CccccchHHHHHHHHHHHHHh-------cCCeEEEEe----CchhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcCH
Confidence 411 11 1234444444332 346799999 455678888888874 4688888888775 5889
Q ss_pred hhhcccceeeecCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhcCC------CHHHHHHHHHHHh
Q 020071 157 PIQSRCAIVRFSRLSDEEILSRLMVVVQE----EKVPYVPEGLEAIIFTADG------DMRQALNNLQATY 217 (331)
Q Consensus 157 ~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~~~g------~~r~~~~~l~~~~ 217 (331)
++.+||.++.|++|+.++...+++..+.+ .++.++++++..++.++.+ -++++++.++.+.
T Consensus 312 al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~ 382 (468)
T 3pxg_A 312 ALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAG 382 (468)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHH
T ss_pred HHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHH
Confidence 99999999999999999999999987765 6888999999999987642 3667888887653
No 43
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.82 E-value=8.4e-19 Score=152.98 Aligned_cols=198 Identities=8% Similarity=0.109 Sum_probs=139.0
Q ss_pred hhhhcCCCCCCccccCHHHHHHHH----HHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCC-----CCCceEEeecC
Q 020071 15 WVEKYRPTKVCDIVGNLDAVARLG----IIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN-----YREAVMELNAS 85 (331)
Q Consensus 15 ~~~~~~p~~~~~~ig~~~~~~~l~----~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~ 85 (331)
+.+.|.|..+ +.|++..+..+. ..+..+..++++|+||||||||++++.+++.+.... ....++.+||.
T Consensus 12 l~~~~~~~~~--L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~ 89 (318)
T 3te6_A 12 IRESLQKREL--LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL 89 (318)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT
T ss_pred hhhccCCccc--cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc
Confidence 3444555332 677777777655 445567777799999999999999999999985321 13567889987
Q ss_pred CCCChHhHH-H-----------------HHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh---cCCcEE
Q 020071 86 DDRGIDVVR-N-----------------KIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY---SNSTRF 144 (331)
Q Consensus 86 ~~~~~~~i~-~-----------------~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~---~~~~~~ 144 (331)
.......+. . .+........ ...+...||++||+|.+. .++.|..+++.+ ..++.+
T Consensus 90 ~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~-~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~v 166 (318)
T 3te6_A 90 ELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVP-KAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSI 166 (318)
T ss_dssp CCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSC-GGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEE
T ss_pred ccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhh-hccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEE
Confidence 643322111 1 1111111100 012346799999999998 677888887643 345678
Q ss_pred EEeeCCCCC----CChhhhccc--ceeeecCCCHHHHHHHHHHHHHhcC-------------------------------
Q 020071 145 ALACNVSSK----IIEPIQSRC--AIVRFSRLSDEEILSRLMVVVQEEK------------------------------- 187 (331)
Q Consensus 145 I~~~~~~~~----l~~~l~sr~--~~i~~~~~~~~~~~~~l~~~~~~~~------------------------------- 187 (331)
|+++|..+. +.+.++||+ ..+.|+|++.+++.++++++++...
T Consensus 167 I~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (318)
T 3te6_A 167 ICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNV 246 (318)
T ss_dssp EEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTE
T ss_pred EEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccc
Confidence 888887643 446678887 5799999999999999999987632
Q ss_pred ----CCCCHHHHHHHHH---hcCCCHHHHHHHHHHHh
Q 020071 188 ----VPYVPEGLEAIIF---TADGDMRQALNNLQATY 217 (331)
Q Consensus 188 ----~~i~~~~~~~l~~---~~~g~~r~~~~~l~~~~ 217 (331)
..+++++++.+++ ..+||+|+|++.|+.+.
T Consensus 247 ~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~ 283 (318)
T 3te6_A 247 IVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAV 283 (318)
T ss_dssp EEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Confidence 1369999999998 57899999999998763
No 44
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.82 E-value=9.5e-20 Score=160.57 Aligned_cols=185 Identities=17% Similarity=0.198 Sum_probs=140.0
Q ss_pred CccccCHHHHHHHHHHHHcCC--------CC-eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHH
Q 020071 25 CDIVGNLDAVARLGIIARDGN--------MP-NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRN 95 (331)
Q Consensus 25 ~~~ig~~~~~~~l~~~l~~~~--------~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 95 (331)
.+++|++.+++.+...+..+. .. +++|+||+|+|||++|+.+++.+.+. ..+++.+++...........
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~~~~~ 94 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKHAVSR 94 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTTHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeecccccccccHHH
Confidence 468899999999988887642 22 48999999999999999999998654 34566777654322111111
Q ss_pred HH---------------HHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCcEEEEeeC
Q 020071 96 KI---------------KMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS-----------NSTRFALACN 149 (331)
Q Consensus 96 ~i---------------~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~~ 149 (331)
.+ ..... ...+.+++|||+|.++...++.|++++++.. .++.+|+++|
T Consensus 95 l~g~~~~~~~~~~~~~~~~~~~------~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn 168 (311)
T 4fcw_A 95 LIGAPPGYVGYEEGGQLTEAVR------RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSN 168 (311)
T ss_dssp HHCCCTTSTTTTTCCHHHHHHH------HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEES
T ss_pred hcCCCCccccccccchHHHHHH------hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecc
Confidence 11 11111 1235799999999999999999999999764 3566899998
Q ss_pred C--------------------------CCCCChhhhccc-ceeeecCCCHHHHHHHHHHHHHhc---------CCCCCHH
Q 020071 150 V--------------------------SSKIIEPIQSRC-AIVRFSRLSDEEILSRLMVVVQEE---------KVPYVPE 193 (331)
Q Consensus 150 ~--------------------------~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~---------~~~i~~~ 193 (331)
. ...+.+.+.+|+ .++.|.|++.+++..++...+.+. .+.++++
T Consensus 169 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 248 (311)
T 4fcw_A 169 LGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEA 248 (311)
T ss_dssp TTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHH
T ss_pred cCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHH
Confidence 7 346778899999 678999999999999988765542 3568999
Q ss_pred HHHHHHHhc---CCCHHHHHHHHHHHh
Q 020071 194 GLEAIIFTA---DGDMRQALNNLQATY 217 (331)
Q Consensus 194 ~~~~l~~~~---~g~~r~~~~~l~~~~ 217 (331)
+++.|++++ .||.|.+.+.++.+.
T Consensus 249 ~~~~l~~~~~~~~gn~R~L~~~i~~~~ 275 (311)
T 4fcw_A 249 AKDFLAERGYDPVFGARPLRRVIQREL 275 (311)
T ss_dssp HHHHHHHHSCBTTTBTTTHHHHHHHHT
T ss_pred HHHHHHHhCCCccCCchhHHHHHHHHH
Confidence 999999976 489999999987653
No 45
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.1e-18 Score=156.45 Aligned_cols=197 Identities=19% Similarity=0.223 Sum_probs=139.3
Q ss_pred CCCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC
Q 020071 21 PTKVCDIVGNLDAVARLGIIARD-----------G-NMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD 87 (331)
Q Consensus 21 p~~~~~~ig~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (331)
..+|+|+.|.+++++.|...+.- | ..|. +|||||||||||++|+++|..+ +.+++.+++++.
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~-----~~~~~~v~~s~l 251 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI-----GANFIFSPASGI 251 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH-----TCEEEEEEGGGT
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEehhhh
Confidence 34899999999999998887642 3 2233 9999999999999999999999 788888887655
Q ss_pred CC------hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHHHh--cCCcEEE
Q 020071 88 RG------IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA--------------GAQQALRRTMEIY--SNSTRFA 145 (331)
Q Consensus 88 ~~------~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~--------------~~~~~Ll~~le~~--~~~~~~I 145 (331)
.+ ...++..+..+.. ..+.||||||+|.+.. ...+.|+..|+.. ..++.+|
T Consensus 252 ~sk~~Gese~~ir~~F~~A~~-------~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI 324 (437)
T 4b4t_L 252 VDKYIGESARIIREMFAYAKE-------HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKII 324 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHH-------SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEE
T ss_pred ccccchHHHHHHHHHHHHHHh-------cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEE
Confidence 32 1233444333332 2367999999998731 1245677777643 3467899
Q ss_pred EeeCCCCCCChhhhcc--c-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH---h-
Q 020071 146 LACNVSSKIIEPIQSR--C-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG-DMRQALNNLQAT---Y- 217 (331)
Q Consensus 146 ~~~~~~~~l~~~l~sr--~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~~~~~l~~~---~- 217 (331)
++||.+..+.++++++ + ..+.|++|+.++..++++..+++.... ++..++.+++.+.| +...+.+++..+ +
T Consensus 325 ~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA~~~ai 403 (437)
T 4b4t_L 325 MATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEAGFFAI 403 (437)
T ss_dssp EEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHH
T ss_pred EecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999876 4 358999999999999998887765432 22236788988866 444444444332 1
Q ss_pred -hCCCccchhhhhh
Q 020071 218 -SGFRFVNQENVFK 230 (331)
Q Consensus 218 -~~~~~i~~~~v~~ 230 (331)
.+...|+.+++.+
T Consensus 404 r~~~~~i~~~d~~~ 417 (437)
T 4b4t_L 404 RDDRDHINPDDLMK 417 (437)
T ss_dssp HTTCSSBCHHHHHH
T ss_pred HcCCCCCCHHHHHH
Confidence 3445566665544
No 46
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.9e-18 Score=154.64 Aligned_cols=201 Identities=18% Similarity=0.182 Sum_probs=140.7
Q ss_pred hhcCCCCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEee
Q 020071 17 EKYRPTKVCDIVGNLDAVARLGIIARD-----------G-NMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELN 83 (331)
Q Consensus 17 ~~~~p~~~~~~ig~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 83 (331)
++-...+|+|+.|.+++++.|+..+.. | ..|. +|||||||||||++|+++|.++ +.+++.++
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~-----~~~fi~v~ 248 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT-----SATFLRIV 248 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH-----TCEEEEEE
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh-----CCCEEEEE
Confidence 343445999999999999999887642 3 2233 9999999999999999999999 78888888
Q ss_pred cCCCCC------hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHHH--hcCC
Q 020071 84 ASDDRG------IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA--------------GAQQALRRTMEI--YSNS 141 (331)
Q Consensus 84 ~~~~~~------~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~--------------~~~~~Ll~~le~--~~~~ 141 (331)
+++..+ ...++..+..+... .+.||||||+|.+.. .....|+..++. ...+
T Consensus 249 ~s~l~sk~vGesek~ir~lF~~Ar~~-------aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ 321 (437)
T 4b4t_I 249 GSELIQKYLGDGPRLCRQIFKVAGEN-------APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGD 321 (437)
T ss_dssp SGGGCCSSSSHHHHHHHHHHHHHHHT-------CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSS
T ss_pred HHHhhhccCchHHHHHHHHHHHHHhc-------CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCC
Confidence 765422 12344444444332 367999999997731 123455666663 3356
Q ss_pred cEEEEeeCCCCCCChhhhc--ccc-eeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH-
Q 020071 142 TRFALACNVSSKIIEPIQS--RCA-IVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG-DMRQALNNLQAT- 216 (331)
Q Consensus 142 ~~~I~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~~~~~l~~~- 216 (331)
+.+|++||.++.+.+++++ |+. .+.|+.|+.++..++++..+++..+. ++-.++.|++.+.| +...+.+++..+
T Consensus 322 ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eA~ 400 (437)
T 4b4t_I 322 VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-EDVNLETLVTTKDDLSGADIQAMCTEAG 400 (437)
T ss_dssp EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-SCCCHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 7889999999999999987 664 57999999999999998887654432 12237888888765 444444444332
Q ss_pred --h--hCCCccchhhhhh
Q 020071 217 --Y--SGFRFVNQENVFK 230 (331)
Q Consensus 217 --~--~~~~~i~~~~v~~ 230 (331)
+ .+...|+.+++.+
T Consensus 401 ~~Air~~~~~It~eDf~~ 418 (437)
T 4b4t_I 401 LLALRERRMQVTAEDFKQ 418 (437)
T ss_dssp HHHHHTTCSCBCHHHHHH
T ss_pred HHHHHcCCCccCHHHHHH
Confidence 1 3445566666554
No 47
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.81 E-value=1.6e-18 Score=155.22 Aligned_cols=215 Identities=18% Similarity=0.122 Sum_probs=141.5
Q ss_pred hhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCC----CCCC---------------
Q 020071 17 EKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP----NYRE--------------- 77 (331)
Q Consensus 17 ~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~----~~~~--------------- 77 (331)
..-+|.+|++++|++.++..+..........+++|+||+|+|||++|+++++.+... ....
T Consensus 16 ~~~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (350)
T 1g8p_A 16 KTRPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVL 95 (350)
T ss_dssp --CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCS
T ss_pred CCCCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhh
Confidence 444678999999999988876666554444569999999999999999999987421 0001
Q ss_pred ---------ceEEeecCCC----CChHhHHHHHHHHHhccc--CCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh----
Q 020071 78 ---------AVMELNASDD----RGIDVVRNKIKMFAQKKV--TLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY---- 138 (331)
Q Consensus 78 ---------~~~~~~~~~~----~~~~~i~~~i~~~~~~~~--~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~---- 138 (331)
+++.+..... .+...+...+........ ....+.+.+++|||++.++.+.++.|++.+++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~ 175 (350)
T 1g8p_A 96 STNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVV 175 (350)
T ss_dssp CCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEE
T ss_pred ccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCceEE
Confidence 1111111100 000001111111100000 000123679999999999999999999999973
Q ss_pred ---------cCCcEEEEeeCCCC-CCChhhhcccce-eeecCCC-HHHHHHHHHHH------------------------
Q 020071 139 ---------SNSTRFALACNVSS-KIIEPIQSRCAI-VRFSRLS-DEEILSRLMVV------------------------ 182 (331)
Q Consensus 139 ---------~~~~~~I~~~~~~~-~l~~~l~sr~~~-i~~~~~~-~~~~~~~l~~~------------------------ 182 (331)
+.++++|+++|... .+.+++.+||.. +.+++++ .++..+++..+
T Consensus 176 ~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (350)
T 1g8p_A 176 ERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQ 255 (350)
T ss_dssp CCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred EecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHH
Confidence 24677888888644 899999999976 8999995 44444555441
Q ss_pred -----HHhcCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHHh-----hCCCccchhhhhhh
Q 020071 183 -----VQEEKVPYVPEGLEAIIFTADG----DMRQALNNLQATY-----SGFRFVNQENVFKV 231 (331)
Q Consensus 183 -----~~~~~~~i~~~~~~~l~~~~~g----~~r~~~~~l~~~~-----~~~~~i~~~~v~~~ 231 (331)
....++.++++++++|++.+.+ ++|.+.+.++.+. .+...|+.+++.++
T Consensus 256 i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a 318 (350)
T 1g8p_A 256 ILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRV 318 (350)
T ss_dssp HHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHH
Confidence 2234568999999999988765 8999999987542 34456888877653
No 48
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.81 E-value=1.1e-18 Score=150.28 Aligned_cols=204 Identities=15% Similarity=0.173 Sum_probs=139.1
Q ss_pred CCCccccCHHHHHHHHHHHHc--CCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHH
Q 020071 23 KVCDIVGNLDAVARLGIIARD--GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMF 100 (331)
Q Consensus 23 ~~~~~ig~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 100 (331)
+|++++|++..+..+.+.+.. ....+++|+||+|+|||++|+++++..... ..+++.+++... ..+.+...+-..
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~-~~~~~~~~l~g~ 80 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAAL-NENLLDSELFGH 80 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGS-CHHHHHHHHHCC
T ss_pred ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCC-ChhHHHHHhcCC
Confidence 688999999999887776654 222359999999999999999999987433 357888888765 222222211000
Q ss_pred Hhccc---------CCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh-----------cCCcEEEEeeCCC-------CC
Q 020071 101 AQKKV---------TLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY-----------SNSTRFALACNVS-------SK 153 (331)
Q Consensus 101 ~~~~~---------~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~~~~-------~~ 153 (331)
....+ .+......+++|||++.++.+.++.|++++++. +.++++|+++|.. ..
T Consensus 81 ~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~ 160 (265)
T 2bjv_A 81 EAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGT 160 (265)
T ss_dssp C---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTS
T ss_pred cccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCC
Confidence 00000 000124579999999999999999999999963 3568899999874 25
Q ss_pred CChhhhcccc--eeeecCCCH--HHHHHHH----HHHHHhcCC----CCCHHHHHHHHHhc-CCCHHHHHHHHHHHh--h
Q 020071 154 IIEPIQSRCA--IVRFSRLSD--EEILSRL----MVVVQEEKV----PYVPEGLEAIIFTA-DGDMRQALNNLQATY--S 218 (331)
Q Consensus 154 l~~~l~sr~~--~i~~~~~~~--~~~~~~l----~~~~~~~~~----~i~~~~~~~l~~~~-~g~~r~~~~~l~~~~--~ 218 (331)
+.+.+.+|+. .+.++|++. +++..++ ...+.+.+. .+++++++.|..+. .||+|.+.+.++.+. .
T Consensus 161 ~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 161 FRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp SCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 6789999984 468888875 5665544 444444554 68999999998876 899999999998764 3
Q ss_pred CCCccchhhhh
Q 020071 219 GFRFVNQENVF 229 (331)
Q Consensus 219 ~~~~i~~~~v~ 229 (331)
....|+.+++.
T Consensus 241 ~~~~i~~~~l~ 251 (265)
T 2bjv_A 241 GTSDYPLDDII 251 (265)
T ss_dssp CCSSSCBCCCC
T ss_pred CCCcCcHHHcc
Confidence 45567777664
No 49
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.8e-18 Score=155.05 Aligned_cols=196 Identities=19% Similarity=0.233 Sum_probs=137.2
Q ss_pred CCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC
Q 020071 22 TKVCDIVGNLDAVARLGIIARD-----------G-NMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR 88 (331)
Q Consensus 22 ~~~~~~ig~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (331)
.+|+|+.|.+++++.|+..+.- | ..|. +|||||||||||++|+++|.++ +.+++.+++++..
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~-----~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT-----DATFIRVIGSELV 280 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH-----TCEEEEEEGGGGC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc-----CCCeEEEEhHHhh
Confidence 4899999999999999876532 3 3333 9999999999999999999999 7888888876542
Q ss_pred C------hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH-----------H---HHHHHHHHHHHh--cCCcEEEE
Q 020071 89 G------IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA-----------G---AQQALRRTMEIY--SNSTRFAL 146 (331)
Q Consensus 89 ~------~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~-----------~---~~~~Ll~~le~~--~~~~~~I~ 146 (331)
+ ...+++.+..+... .+.||||||+|.+.. . ....|+..|+.. ..++.+|+
T Consensus 281 sk~vGesek~ir~lF~~Ar~~-------aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIa 353 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTK-------KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMF 353 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHT-------CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhc-------CCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEe
Confidence 2 22444444444332 367999999998731 1 234455555532 34677888
Q ss_pred eeCCCCCCChhhhc--cc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH-----h
Q 020071 147 ACNVSSKIIEPIQS--RC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG-DMRQALNNLQAT-----Y 217 (331)
Q Consensus 147 ~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~~~~~l~~~-----~ 217 (331)
+||.+..+.+++++ |+ ..+.|+.|+.++..++++..+++..+. ++-.++.|++.+.| +...+.+++..+ .
T Consensus 354 ATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air 432 (467)
T 4b4t_H 354 ATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGMFAIR 432 (467)
T ss_dssp ECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999987 77 457999999999999998877654432 11236788888866 444444444332 1
Q ss_pred hCCCccchhhhhh
Q 020071 218 SGFRFVNQENVFK 230 (331)
Q Consensus 218 ~~~~~i~~~~v~~ 230 (331)
.+...|+.+++.+
T Consensus 433 ~~~~~it~~Df~~ 445 (467)
T 4b4t_H 433 ARRKVATEKDFLK 445 (467)
T ss_dssp HTCSSBCHHHHHH
T ss_pred cCCCccCHHHHHH
Confidence 3455666666544
No 50
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.3e-18 Score=157.58 Aligned_cols=199 Identities=18% Similarity=0.204 Sum_probs=139.5
Q ss_pred CCCCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCC
Q 020071 20 RPTKVCDIVGNLDAVARLGIIARD-----------G-NMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASD 86 (331)
Q Consensus 20 ~p~~~~~~ig~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (331)
.+.+|+|+.|.+++++.|...+.. | ..|. +|||||||||||++|+++|.++ +.+++.+++++
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~-----~~~f~~v~~s~ 250 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT-----NATFLKLAAPQ 250 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH-----TCEEEEEEGGG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh-----CCCEEEEehhh
Confidence 445899999999999998876431 3 2233 9999999999999999999999 78888888765
Q ss_pred CCC------hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC-----------HH---HHHHHHHHHHHh--cCCcEE
Q 020071 87 DRG------IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT-----------AG---AQQALRRTMEIY--SNSTRF 144 (331)
Q Consensus 87 ~~~------~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~-----------~~---~~~~Ll~~le~~--~~~~~~ 144 (331)
..+ ...++..+..+... .+.||||||+|.+. .. ..+.|+..|+.. ..++.+
T Consensus 251 l~~~~vGese~~ir~lF~~A~~~-------aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViV 323 (434)
T 4b4t_M 251 LVQMYIGEGAKLVRDAFALAKEK-------APTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKV 323 (434)
T ss_dssp GCSSCSSHHHHHHHHHHHHHHHH-------CSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEE
T ss_pred hhhcccchHHHHHHHHHHHHHhc-------CCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEE
Confidence 422 22344444443332 25799999998662 11 234566666643 346788
Q ss_pred EEeeCCCCCCChhhhc--ccc-eeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH----
Q 020071 145 ALACNVSSKIIEPIQS--RCA-IVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG-DMRQALNNLQAT---- 216 (331)
Q Consensus 145 I~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~~~~~l~~~---- 216 (331)
|.+||.+..+.+++.+ |+. .+.|++|+.++..++++..+++.... ++-.++.|++.+.| +...+.+.+..+
T Consensus 324 IaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a 402 (434)
T 4b4t_M 324 LAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDINWQELARSTDEFNGAQLKAVTVEAGMIA 402 (434)
T ss_dssp EEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCCHHHHHHHCSSCCHHHHHHHHHHHHHHH
T ss_pred EEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 8899999999999987 664 57999999999999998887765432 11236788888766 444444444432
Q ss_pred -hhCCCccchhhhhhh
Q 020071 217 -YSGFRFVNQENVFKV 231 (331)
Q Consensus 217 -~~~~~~i~~~~v~~~ 231 (331)
..+...|+.+++.+.
T Consensus 403 ~r~~~~~i~~~Df~~A 418 (434)
T 4b4t_M 403 LRNGQSSVKHEDFVEG 418 (434)
T ss_dssp HHHTCSSBCHHHHHHH
T ss_pred HHcCCCCcCHHHHHHH
Confidence 144556777766543
No 51
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=3.1e-18 Score=155.06 Aligned_cols=196 Identities=19% Similarity=0.254 Sum_probs=138.7
Q ss_pred CCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC
Q 020071 22 TKVCDIVGNLDAVARLGIIARD-----------G-NMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR 88 (331)
Q Consensus 22 ~~~~~~ig~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (331)
.+|+|+.|.+++++.|...+.. | ..|. +|||||||||||++|+++|..+ +.+++.+++++..
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~-----~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST-----KAAFIRVNGSEFV 243 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH-----TCEEEEEEGGGTC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEecchhh
Confidence 4899999999999998887642 3 2233 9999999999999999999999 7889988876642
Q ss_pred C------hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC--------------HHHHHHHHHHHHHh--cCCcEEEE
Q 020071 89 G------IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT--------------AGAQQALRRTMEIY--SNSTRFAL 146 (331)
Q Consensus 89 ~------~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~--------------~~~~~~Ll~~le~~--~~~~~~I~ 146 (331)
+ ...+++.+..+... .+.+++|||+|.+. ....+.|+..|+.. ..++.+|+
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~-------aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~ 316 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLAREN-------APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIM 316 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHT-------CSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEE
T ss_pred ccccchhHHHHHHHHHHHHHc-------CCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEE
Confidence 2 23455555444432 36799999998551 12356777777753 45678899
Q ss_pred eeCCCCCCChhhhc--ccc-eeeec-CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH-----
Q 020071 147 ACNVSSKIIEPIQS--RCA-IVRFS-RLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG-DMRQALNNLQAT----- 216 (331)
Q Consensus 147 ~~~~~~~l~~~l~s--r~~-~i~~~-~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~~~~~l~~~----- 216 (331)
+||.+..+.+++++ |+. .+.|+ +|+.++...+++..+++.++. ++..++.|+..+.| +...+.+.+..+
T Consensus 317 aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~ 395 (428)
T 4b4t_K 317 ATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGLRAV 395 (428)
T ss_dssp EESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred ecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999987 664 57885 688888888888877655432 22247888888765 444444444432
Q ss_pred hhCCCccchhhhhh
Q 020071 217 YSGFRFVNQENVFK 230 (331)
Q Consensus 217 ~~~~~~i~~~~v~~ 230 (331)
..+...|+.+++.+
T Consensus 396 r~~~~~i~~~d~~~ 409 (428)
T 4b4t_K 396 RKNRYVILQSDLEE 409 (428)
T ss_dssp HTTCSSBCHHHHHH
T ss_pred HCCCCCCCHHHHHH
Confidence 13445677666654
No 52
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.79 E-value=5.1e-18 Score=156.18 Aligned_cols=201 Identities=19% Similarity=0.174 Sum_probs=144.4
Q ss_pred cCCCCCCccccCHHHHHHHHHHHHc-----------CCCC-eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCC
Q 020071 19 YRPTKVCDIVGNLDAVARLGIIARD-----------GNMP-NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASD 86 (331)
Q Consensus 19 ~~p~~~~~~ig~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (331)
..+.+|+|++|++.++..+...+.. ...| +++|+||||+|||++|++++... +.+++.+++++
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~-----~~~f~~is~~~ 84 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA-----NVPFFHISGSD 84 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH-----TCCEEEEEGGG
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCCeeeCCHHH
Confidence 3445899999999999988777543 2233 49999999999999999999998 67788888765
Q ss_pred CCC------hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHHH--hcCCcEE
Q 020071 87 DRG------IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA--------------GAQQALRRTMEI--YSNSTRF 144 (331)
Q Consensus 87 ~~~------~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~--------------~~~~~Ll~~le~--~~~~~~~ 144 (331)
... ...++..+..+.. ..+.++||||+|.+.. ...+.|+..++. ...++++
T Consensus 85 ~~~~~~g~~~~~~r~lf~~A~~-------~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viV 157 (476)
T 2ce7_A 85 FVELFVGVGAARVRDLFAQAKA-------HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIV 157 (476)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHH-------TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEE
T ss_pred HHHHHhcccHHHHHHHHHHHHh-------cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEE
Confidence 421 1233444443332 2367999999998743 245677777764 3456788
Q ss_pred EEeeCCCCCCChhhhc--ccc-eeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCH-HHHHHHHHHHh---
Q 020071 145 ALACNVSSKIIEPIQS--RCA-IVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDM-RQALNNLQATY--- 217 (331)
Q Consensus 145 I~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~-r~~~~~l~~~~--- 217 (331)
|.+||.+..+.+++.+ |+. .+.+++|+.++..++++..+++..+. ++..+..++..+.|+. +.+.+.++.++
T Consensus 158 IaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~-~~v~l~~la~~t~G~sgadL~~lv~~Aal~A 236 (476)
T 2ce7_A 158 MAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA-EDVNLEIIAKRTPGFVGADLENLVNEAALLA 236 (476)
T ss_dssp EEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred EEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc-chhhHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 8899998888888876 664 67999999999999998777654432 2223777999998876 66777776542
Q ss_pred --hCCCccchhhhhhhc
Q 020071 218 --SGFRFVNQENVFKVC 232 (331)
Q Consensus 218 --~~~~~i~~~~v~~~~ 232 (331)
.+...|+.+++.+.+
T Consensus 237 ~~~~~~~I~~~dl~~al 253 (476)
T 2ce7_A 237 AREGRDKITMKDFEEAI 253 (476)
T ss_dssp HHTTCSSBCHHHHHHHH
T ss_pred HHcCCCeecHHHHHHHH
Confidence 244678888876543
No 53
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.79 E-value=3.8e-19 Score=145.16 Aligned_cols=164 Identities=18% Similarity=0.236 Sum_probs=119.6
Q ss_pred CCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCC-----CCceEEeecCC
Q 020071 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY-----REAVMELNASD 86 (331)
Q Consensus 12 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-----~~~~~~~~~~~ 86 (331)
..+|.++++|..|++++|++..+..+...+..+...+++|+||+|+|||++++.+++.+.+... ...++.+++..
T Consensus 9 ~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (195)
T 1jbk_A 9 TIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 88 (195)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH
T ss_pred hHHHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH
Confidence 3589999999999999999999999999998877667999999999999999999999854221 23455555322
Q ss_pred C----CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH--------HHHHHHHHHHHHhcCCcEEEEeeCCCC--
Q 020071 87 D----RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA--------GAQQALRRTMEIYSNSTRFALACNVSS-- 152 (331)
Q Consensus 87 ~----~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~--------~~~~~Ll~~le~~~~~~~~I~~~~~~~-- 152 (331)
. .........+......... .+++.+++|||+|.+.. ..++.|..+++. .++.+|++++...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~~~~~~ 164 (195)
T 1jbk_A 89 LVAGAKYRGEFEERLKGVLNDLAK--QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYR 164 (195)
T ss_dssp HHTTTCSHHHHHHHHHHHHHHHHH--STTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEECHHHHH
T ss_pred HhccCCccccHHHHHHHHHHHHhh--cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCCHHHHH
Confidence 1 1112222222222221100 23467999999999953 236677777764 4577888887754
Q ss_pred ---CCChhhhcccceeeecCCCHHHHHHHH
Q 020071 153 ---KIIEPIQSRCAIVRFSRLSDEEILSRL 179 (331)
Q Consensus 153 ---~l~~~l~sr~~~i~~~~~~~~~~~~~l 179 (331)
.+.+++.+||..+.|.+|+.++..+++
T Consensus 165 ~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 165 QYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 678999999999999999999887664
No 54
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.77 E-value=2.1e-18 Score=171.28 Aligned_cols=202 Identities=17% Similarity=0.188 Sum_probs=142.3
Q ss_pred CCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCC-----CCceEEeecCC
Q 020071 12 DIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY-----REAVMELNASD 86 (331)
Q Consensus 12 ~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-----~~~~~~~~~~~ 86 (331)
..+|+++++|..|++++|++..+..+...+..+..++++|+||||+|||++++.+++.+.+... +..++.+++..
T Consensus 157 ~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~ 236 (854)
T 1qvr_A 157 GIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGS 236 (854)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--
T ss_pred HHhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHH
Confidence 4589999999999999999999999999999888778999999999999999999999854221 45567776654
Q ss_pred CCC----hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC--------HHHHHHHHHHHHHhcCCcEEEEeeCCCC--
Q 020071 87 DRG----IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT--------AGAQQALRRTMEIYSNSTRFALACNVSS-- 152 (331)
Q Consensus 87 ~~~----~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~--------~~~~~~Ll~~le~~~~~~~~I~~~~~~~-- 152 (331)
... ...+.+.+......... .+++.++||||+|.+. .+..+.|..+++. ..+.+|++++...
T Consensus 237 l~~g~~~~g~~~~~l~~~~~~~~~--~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~~~~~~ 312 (854)
T 1qvr_A 237 LLAGAKYRGEFEERLKAVIQEVVQ--SQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTLDEYR 312 (854)
T ss_dssp ---------CHHHHHHHHHHHHHT--TCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECHHHHH
T ss_pred hhccCccchHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecCchHHh
Confidence 321 11222222222221110 2346799999999996 4456778888875 4567788877543
Q ss_pred --CCChhhhcccceeeecCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHhcCC------CHHHHHHHHHHHh
Q 020071 153 --KIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQ----EEKVPYVPEGLEAIIFTADG------DMRQALNNLQATY 217 (331)
Q Consensus 153 --~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~----~~~~~i~~~~~~~l~~~~~g------~~r~~~~~l~~~~ 217 (331)
.+.+++.+||..+.+++|+.++...+++..+. ..++.++++++..++++++| -+.+++..++.++
T Consensus 313 ~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~ 389 (854)
T 1qvr_A 313 EIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAA 389 (854)
T ss_dssp HHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHH
T ss_pred hhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHH
Confidence 46799999999999999999999999987655 34788999999999987743 4788888887653
No 55
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.77 E-value=1.1e-17 Score=146.59 Aligned_cols=185 Identities=19% Similarity=0.187 Sum_probs=132.8
Q ss_pred hcCCCCCCccccCHHHHHHHHHHHHc-----------C-CCC-eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeec
Q 020071 18 KYRPTKVCDIVGNLDAVARLGIIARD-----------G-NMP-NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNA 84 (331)
Q Consensus 18 ~~~p~~~~~~ig~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 84 (331)
.+.+.+|++++|++.+++.+...+.. + ..+ +++|+||+|+|||++|+++++.+ +.+++.+++
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~-----~~~~i~v~~ 82 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKG 82 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT-----TCEEEEECH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh-----CCCEEEEEh
Confidence 45567899999999999999888753 2 222 38999999999999999999988 567777775
Q ss_pred CCCC------ChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHH--------------HHHHHHHHHHH--hcCCc
Q 020071 85 SDDR------GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG--------------AQQALRRTMEI--YSNST 142 (331)
Q Consensus 85 ~~~~------~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~--------------~~~~Ll~~le~--~~~~~ 142 (331)
.+.. ....++..+..... ..+.+++|||+|.+... .++.|+..++. ...++
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~-------~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v 155 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQ-------AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNV 155 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHH-------TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSE
T ss_pred HHHHhhhcCchHHHHHHHHHHHHh-------cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCE
Confidence 4321 11233344333322 23679999999987543 36788888874 34578
Q ss_pred EEEEeeCCCCCCChhhhc--cc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHH
Q 020071 143 RFALACNVSSKIIEPIQS--RC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG-DMRQALNNLQA 215 (331)
Q Consensus 143 ~~I~~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~~~~~l~~ 215 (331)
++|++||.+..+.+++.+ |+ ..+.+++|+.++..++++..+++.+.. ++..++.++..+.| +.+.+.+.++.
T Consensus 156 ~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~~l~~~ 231 (301)
T 3cf0_A 156 FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQR 231 (301)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHHHHHHH
T ss_pred EEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHHHHHHH
Confidence 899999999999999888 77 468999999999999999888766543 22235567776654 34455555544
No 56
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.77 E-value=2.5e-18 Score=162.08 Aligned_cols=214 Identities=21% Similarity=0.251 Sum_probs=145.0
Q ss_pred CCchhhhcCCCC---------CCccccCHHHHHHHHHHHHc------CCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCC
Q 020071 12 DIPWVEKYRPTK---------VCDIVGNLDAVARLGIIARD------GNMPNLILAGPPGTGKTTSILALAHELLGPNYR 76 (331)
Q Consensus 12 ~~~~~~~~~p~~---------~~~~ig~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~ 76 (331)
.+||....++.. .++++|++++...+...+.- ...++++|+||+|+|||++++.++..+ .
T Consensus 59 ~lp~~~~~~~~~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l-----~ 133 (543)
T 3m6a_A 59 ALPWTDETDDKLDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL-----G 133 (543)
T ss_dssp HSCSSCCCCCCCCTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH-----T
T ss_pred cCCCCccccccccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc-----C
Confidence 357766554332 34589999999877655431 223458999999999999999999998 5
Q ss_pred CceEEeecCCCCChHhHH-----------HHHHHHHhcccCCCCCCceEEEEeCCCCCCHH----HHHHHHHHHHHhc--
Q 020071 77 EAVMELNASDDRGIDVVR-----------NKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG----AQQALRRTMEIYS-- 139 (331)
Q Consensus 77 ~~~~~~~~~~~~~~~~i~-----------~~i~~~~~~~~~~~~~~~~vviide~d~l~~~----~~~~Ll~~le~~~-- 139 (331)
.++..+++........+. ..+....... .....+++|||+|.+..+ .++.|++.++...
T Consensus 134 ~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a----~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~ 209 (543)
T 3m6a_A 134 RKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKA----GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNS 209 (543)
T ss_dssp CEEEEECCCC--------------------CHHHHHHTT----CSSSEEEEEEESSSCC---------CCGGGTCTTTTT
T ss_pred CCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHh----hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcc
Confidence 667777665432111110 0111111111 223459999999999876 4588898887432
Q ss_pred -------------CCcEEEEeeCCCCCCChhhhcccceeeecCCCHHHHHHHHHHHH-----Hhc-----CCCCCHHHHH
Q 020071 140 -------------NSTRFALACNVSSKIIEPIQSRCAIVRFSRLSDEEILSRLMVVV-----QEE-----KVPYVPEGLE 196 (331)
Q Consensus 140 -------------~~~~~I~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~-----~~~-----~~~i~~~~~~ 196 (331)
.+++||+++|....+.+++++||.++.|++|+.++...++...+ +.. ++.++++++.
T Consensus 210 ~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~ 289 (543)
T 3m6a_A 210 SFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAIL 289 (543)
T ss_dssp BCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHH
T ss_pred eeecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHH
Confidence 46789999999999999999999999999999999988887765 222 4467899999
Q ss_pred HHHHhcC--CCHHHHHHHHHHHh--------h---CCCccchhhhhhhcCC
Q 020071 197 AIIFTAD--GDMRQALNNLQATY--------S---GFRFVNQENVFKVCDQ 234 (331)
Q Consensus 197 ~l~~~~~--g~~r~~~~~l~~~~--------~---~~~~i~~~~v~~~~~~ 234 (331)
.++.... |++|.+.+.++.++ . ....|+.+++.++++.
T Consensus 290 ~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 290 DIIRYYTREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp HHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred HHHHhCChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 9887443 78888887776542 1 2335888888877655
No 57
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.77 E-value=7.6e-18 Score=165.65 Aligned_cols=218 Identities=14% Similarity=0.144 Sum_probs=155.5
Q ss_pred CCCCCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCC-----CCceEEee
Q 020071 9 SAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY-----REAVMELN 83 (331)
Q Consensus 9 ~~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-----~~~~~~~~ 83 (331)
.....+|+++++|..|++++|++..+..+.+.+......+++|+||+|+|||++|+.+++.+.+... ...++.++
T Consensus 170 ~~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 170 ENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp CSSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred HHHhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 4456699999999999999999999999999998887778999999999999999999999865321 22334443
Q ss_pred cCCCC----ChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCC---------CHHHHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 84 ASDDR----GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM---------TAGAQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 84 ~~~~~----~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l---------~~~~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
..... ....+.+.+........ ..++.++||||+|.+ ..+..+.|..+++. ..+++|++++.
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~---~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~I~at~~ 324 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLE---QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTY 324 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHS---SSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEEEEEECH
T ss_pred HHHHhccccccchHHHHHHHHHHHHH---hcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEEEEEeCc
Confidence 32211 11123333333332221 234689999999998 23345555555553 45778888775
Q ss_pred C-----CCCChhhhcccceeeecCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhcCC------CHHHHHHHHHH
Q 020071 151 S-----SKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE----EKVPYVPEGLEAIIFTADG------DMRQALNNLQA 215 (331)
Q Consensus 151 ~-----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~~~g------~~r~~~~~l~~ 215 (331)
. ....+++.+||..+.|++|+.++..+++...+.. .++.++++++..++..+.| .+.+++..++.
T Consensus 325 ~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~ 404 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDE 404 (758)
T ss_dssp HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHH
Confidence 3 3566889999999999999999999999887654 6788999999998877643 45677777765
Q ss_pred Hhh---------CCCccchhhhhhh
Q 020071 216 TYS---------GFRFVNQENVFKV 231 (331)
Q Consensus 216 ~~~---------~~~~i~~~~v~~~ 231 (331)
+.. ....++.+++.++
T Consensus 405 a~~~~~~~~~~~~~~~v~~~di~~~ 429 (758)
T 1r6b_X 405 AGARARLMPVSKRKKTVNVADIESV 429 (758)
T ss_dssp HHHHHHHSSSCCCCCSCCHHHHHHH
T ss_pred HHHHHhcccccccCCccCHHHHHHH
Confidence 431 2345777777654
No 58
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.77 E-value=2.9e-17 Score=143.90 Aligned_cols=204 Identities=15% Similarity=0.204 Sum_probs=142.6
Q ss_pred CccccCHHHHHHHHHHHHc--CCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHh
Q 020071 25 CDIVGNLDAVARLGIIARD--GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQ 102 (331)
Q Consensus 25 ~~~ig~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 102 (331)
++++|++..+..+...+.. ....+++|+||+|+|||++|+++++..... +.+++.+++.... .+.+...+-....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~--~~~~v~v~~~~~~-~~l~~~~lfg~~~ 78 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARS--DRPLVTLNCAALN-ESLLESELFGHEK 78 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCS--SSCCCEEECSSCC-HHHHHHHHTCCCS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCccc--CCCeEEEeCCCCC-hHHHHHHhcCccc
Confidence 4689999999988887765 233359999999999999999999976433 4578888887652 2222211100000
Q ss_pred cccC---------CCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh-----------cCCcEEEEeeCCC-------CCCC
Q 020071 103 KKVT---------LPPGKHKVVVLDEADSMTAGAQQALRRTMEIY-----------SNSTRFALACNVS-------SKII 155 (331)
Q Consensus 103 ~~~~---------~~~~~~~vviide~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~~~~-------~~l~ 155 (331)
..++ +....+.++||||++.++.+.+..|++++++. +.++++|++||.. ..+.
T Consensus 79 g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr 158 (304)
T 1ojl_A 79 GAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFR 158 (304)
T ss_dssp SCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSC
T ss_pred cccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcH
Confidence 0000 00123569999999999999999999999964 3468899999874 3466
Q ss_pred hhhhcccce--eeecCCC--HHHHHHHHHHH----HHhcC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHh--hCCC
Q 020071 156 EPIQSRCAI--VRFSRLS--DEEILSRLMVV----VQEEK---VPYVPEGLEAIIFTA-DGDMRQALNNLQATY--SGFR 221 (331)
Q Consensus 156 ~~l~sr~~~--i~~~~~~--~~~~~~~l~~~----~~~~~---~~i~~~~~~~l~~~~-~g~~r~~~~~l~~~~--~~~~ 221 (331)
+.+.+|+.+ +.++|+. .+++..++... +.+.+ ..+++++++.|..++ .||+|.+.+.++.++ ....
T Consensus 159 ~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~~~~ 238 (304)
T 1ojl_A 159 QDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLLTGE 238 (304)
T ss_dssp HHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 788888644 5688887 45555555443 33333 568999999999998 899999999998764 3455
Q ss_pred ccchhhhhhh
Q 020071 222 FVNQENVFKV 231 (331)
Q Consensus 222 ~i~~~~v~~~ 231 (331)
.|+.+++...
T Consensus 239 ~i~~~~l~~~ 248 (304)
T 1ojl_A 239 YISERELPLA 248 (304)
T ss_dssp SBCGGGSCGG
T ss_pred cccHHhhhhh
Confidence 6887777543
No 59
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.76 E-value=4.7e-18 Score=166.96 Aligned_cols=194 Identities=16% Similarity=0.219 Sum_probs=144.2
Q ss_pred CCCCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCC-----CCCceEEeec
Q 020071 10 AYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN-----YREAVMELNA 84 (331)
Q Consensus 10 ~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~ 84 (331)
....+|+++++|..+++++|++..+..+...+.....+|+||+||||+|||++|+.+++.+.+.. .+..++.+++
T Consensus 165 ~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 165 SLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp SSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred HHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 34568999999999999999999999999999998888899999999999999999999985532 1334555554
Q ss_pred CCC-C--ChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCC-----CCCh
Q 020071 85 SDD-R--GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSS-----KIIE 156 (331)
Q Consensus 85 ~~~-~--~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~-----~l~~ 156 (331)
... . ....++..+..+.. .++.++||| .+.+.++.|+..++. ..+++|+++|... .+.+
T Consensus 245 g~~~~G~~e~~l~~~~~~~~~-------~~~~iLfiD----~~~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~~d~ 311 (758)
T 3pxi_A 245 GTKYRGEFEDRLKKVMDEIRQ-------AGNIILFID----AAIDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDA 311 (758)
T ss_dssp --------CTTHHHHHHHHHT-------CCCCEEEEC----C--------CCCTTS--SSCEEEEECCTTTTHHHHTTCS
T ss_pred cccccchHHHHHHHHHHHHHh-------cCCEEEEEc----CchhHHHHHHHHHhc--CCEEEEeCCChHHHHHHhhccH
Confidence 111 1 11234455544432 346799999 445678888888874 5688899888876 6899
Q ss_pred hhhcccceeeecCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhcC------CCHHHHHHHHHHH
Q 020071 157 PIQSRCAIVRFSRLSDEEILSRLMVVVQE----EKVPYVPEGLEAIIFTAD------GDMRQALNNLQAT 216 (331)
Q Consensus 157 ~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~~~------g~~r~~~~~l~~~ 216 (331)
++++||..+.|++|+.++...+++..... .++.++++++..++.++. ..++.++..++.+
T Consensus 312 al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a 381 (758)
T 3pxi_A 312 ALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEA 381 (758)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHH
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHH
Confidence 99999999999999999999999977655 678899999999888753 3567888888655
No 60
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.76 E-value=1.8e-18 Score=140.43 Aligned_cols=161 Identities=19% Similarity=0.213 Sum_probs=115.3
Q ss_pred CCCCCCCchhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCC-----CCCceEE
Q 020071 7 SSSAYDIPWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN-----YREAVME 81 (331)
Q Consensus 7 ~~~~~~~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~ 81 (331)
.......+|.++|+|..|++++|++..+..+.+.+..+...+++|+||+|+|||++++.+++.+.+.. .+..++.
T Consensus 4 ~l~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~ 83 (187)
T 2p65_A 4 ALEKYSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVS 83 (187)
T ss_dssp CTTTTEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEE
T ss_pred HHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEE
Confidence 34556779999999999999999999999999999887767799999999999999999999985532 1334455
Q ss_pred eecCCC----CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC---------HHHHHHHHHHHHHhcCCcEEEEee
Q 020071 82 LNASDD----RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT---------AGAQQALRRTMEIYSNSTRFALAC 148 (331)
Q Consensus 82 ~~~~~~----~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~---------~~~~~~Ll~~le~~~~~~~~I~~~ 148 (331)
+++... .........+......... .+++.+++|||+|.+. .+..+.|...++. ..+.+|+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~~~ii~~~ 159 (187)
T 2p65_A 84 LDLSSLIAGAKYRGDFEERLKSILKEVQD--AEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--GELRCIGAT 159 (187)
T ss_dssp ECHHHHHHHCCSHHHHHHHHHHHHHHHHH--TTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--TCSCEEEEE
T ss_pred EeHHHhhcCCCchhHHHHHHHHHHHHHHh--cCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc--CCeeEEEec
Confidence 443221 0111222222222111110 2346799999999986 4556777777765 457788888
Q ss_pred CCCC-----CCChhhhcccceeeecCCC
Q 020071 149 NVSS-----KIIEPIQSRCAIVRFSRLS 171 (331)
Q Consensus 149 ~~~~-----~l~~~l~sr~~~i~~~~~~ 171 (331)
+... .+.+++++||..+.+++|+
T Consensus 160 ~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 160 TVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp CHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred CHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 7653 6889999999999998875
No 61
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.76 E-value=1.5e-19 Score=155.95 Aligned_cols=204 Identities=19% Similarity=0.229 Sum_probs=139.2
Q ss_pred hcCCCCCCccccCHHHHHHHHHHHHc-----------CCCC-eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecC
Q 020071 18 KYRPTKVCDIVGNLDAVARLGIIARD-----------GNMP-NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNAS 85 (331)
Q Consensus 18 ~~~p~~~~~~ig~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 85 (331)
++.+..|++++|++.+++.+...+.. ...+ +++|+||+|+|||++|+++++.+ ..+++.+++.
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~-----~~~~~~v~~~ 78 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-----HVPFFSMGGS 78 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH-----TCCCCCCCSC
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCCEEEechH
Confidence 45677899999999999988877652 2333 38999999999999999999998 4455666554
Q ss_pred CCC------ChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHH---------------HHHHHHHHHHHhc---CC
Q 020071 86 DDR------GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAG---------------AQQALRRTMEIYS---NS 141 (331)
Q Consensus 86 ~~~------~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~---------------~~~~Ll~~le~~~---~~ 141 (331)
+.. +...++..+..+.. ..+.+++|||+|.+... .++.|+..++... ..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~a~~-------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (268)
T 2r62_A 79 SFIEMFVGLGASRVRDLFETAKK-------QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAP 151 (268)
T ss_dssp TTTTSCSSSCSSSSSTTHHHHHH-------SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSC
T ss_pred HHHHhhcchHHHHHHHHHHHHHh-------cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCC
Confidence 321 11112222322222 13579999999998643 2455666666543 24
Q ss_pred cEEEEeeCCCCCCChhhhc--cc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHh
Q 020071 142 TRFALACNVSSKIIEPIQS--RC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG-DMRQALNNLQATY 217 (331)
Q Consensus 142 ~~~I~~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 217 (331)
+.+|+++|.+..+.+.+.+ |+ ..+.|++|+.++..++++..++..++. ++..++.+++.+.| ..+.+.+.++.+.
T Consensus 152 v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl~~l~~~a~ 230 (268)
T 2r62_A 152 VIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADLANIINEAA 230 (268)
T ss_dssp CEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHHHHHHHHHH
T ss_pred EEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 6788888888888889988 55 568999999999999998877544322 22235667777766 4556666665543
Q ss_pred -----hCCCccchhhhhhhcCC
Q 020071 218 -----SGFRFVNQENVFKVCDQ 234 (331)
Q Consensus 218 -----~~~~~i~~~~v~~~~~~ 234 (331)
.+...|+.+++.+++..
T Consensus 231 ~~a~~~~~~~i~~~~~~~a~~~ 252 (268)
T 2r62_A 231 LLAGRNNQKEVRQQHLKEAVER 252 (268)
T ss_dssp HTTSSSCCCSCCHHHHHTSCTT
T ss_pred HHHHHhccCCcCHHHHHHHHHH
Confidence 22457888888776654
No 62
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.75 E-value=1e-17 Score=144.75 Aligned_cols=178 Identities=16% Similarity=0.224 Sum_probs=122.0
Q ss_pred CCccccCHHHHHHHHH-------HHH---cCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC-C--h
Q 020071 24 VCDIVGNLDAVARLGI-------IAR---DGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR-G--I 90 (331)
Q Consensus 24 ~~~~ig~~~~~~~l~~-------~l~---~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~-~--~ 90 (331)
...++|++..+..+.. .+. .....+++|+||+|+|||++|+++++.+ +.+++.+++++.. + .
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~-----~~~~~~i~~~~~~~g~~~ 106 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES-----NFPFIKICSPDKMIGFSE 106 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH-----TCSEEEEECGGGCTTCCH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEeCHHHhcCCch
Confidence 3467888766554433 444 2222348999999999999999999997 6677887765421 1 1
Q ss_pred ----HhHHHHHHHHHhcccCCCCCCceEEEEeCCCCC----------CHHHHHHHHHHHHH---hcCCcEEEEeeCCCCC
Q 020071 91 ----DVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSM----------TAGAQQALRRTMEI---YSNSTRFALACNVSSK 153 (331)
Q Consensus 91 ----~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l----------~~~~~~~Ll~~le~---~~~~~~~I~~~~~~~~ 153 (331)
..++..+..+. .....+++|||+|.+ .....+.|...++. ++..+++|.++|.+..
T Consensus 107 ~~~~~~~~~~~~~~~-------~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~ 179 (272)
T 1d2n_A 107 TAKCQAMKKIFDDAY-------KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDV 179 (272)
T ss_dssp HHHHHHHHHHHHHHH-------TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHH
T ss_pred HHHHHHHHHHHHHHH-------hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhh
Confidence 12223332221 245789999999887 34455566666553 3345667777777665
Q ss_pred CCh-hhhcc-cceeeecCCCH-HHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC-----CHHHHHHHHHHHhh
Q 020071 154 IIE-PIQSR-CAIVRFSRLSD-EEILSRLMVVVQEEKVPYVPEGLEAIIFTADG-----DMRQALNNLQATYS 218 (331)
Q Consensus 154 l~~-~l~sr-~~~i~~~~~~~-~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-----~~r~~~~~l~~~~~ 218 (331)
+.+ .+.+| +..+.++|++. +++..++... + .++++.+..+++.+.| |+|.+++.++.+..
T Consensus 180 l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~----~-~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 180 LQEMEMLNAFSTTIHVPNIATGEQLLEALELL----G-NFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ 247 (272)
T ss_dssp HHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH----T-CSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT
T ss_pred cchhhhhcccceEEcCCCccHHHHHHHHHHhc----C-CCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh
Confidence 555 57788 57789998887 6676666542 2 5789999999999988 99999999998653
No 63
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.75 E-value=1.2e-17 Score=150.93 Aligned_cols=202 Identities=20% Similarity=0.219 Sum_probs=136.0
Q ss_pred ccccCHHHHHHHHHHHH----c-------------------------C-CCCeEEEeCCCCccHHHHHHHHHHHhcCCCC
Q 020071 26 DIVGNLDAVARLGIIAR----D-------------------------G-NMPNLILAGPPGTGKTTSILALAHELLGPNY 75 (331)
Q Consensus 26 ~~ig~~~~~~~l~~~l~----~-------------------------~-~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~ 75 (331)
.++||+++++.+...+. . . ...+++|+||+|+|||++|+++++.+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l----- 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL----- 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT-----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh-----
Confidence 58999999998887762 1 1 12359999999999999999999998
Q ss_pred CCceEEeecCCCCCh----HhHHHHHHHHHhc-ccCCCCCCceEEEEeCCCCCCHH--------------HHHHHHHHHH
Q 020071 76 REAVMELNASDDRGI----DVVRNKIKMFAQK-KVTLPPGKHKVVVLDEADSMTAG--------------AQQALRRTME 136 (331)
Q Consensus 76 ~~~~~~~~~~~~~~~----~~i~~~i~~~~~~-~~~~~~~~~~vviide~d~l~~~--------------~~~~Ll~~le 136 (331)
+.+++.+++...... ......+...... ........+.+++|||++.+... .++.|+++|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le 176 (376)
T 1um8_A 97 DIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVE 176 (376)
T ss_dssp TCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHH
T ss_pred CCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhh
Confidence 566777776543210 1111222222111 10000124689999999999887 8999999999
Q ss_pred Hhc---------------------CCcEEEEeeCC-----------------------------------------CCCC
Q 020071 137 IYS---------------------NSTRFALACNV-----------------------------------------SSKI 154 (331)
Q Consensus 137 ~~~---------------------~~~~~I~~~~~-----------------------------------------~~~l 154 (331)
+.. .++.+|+++|. ...+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 256 (376)
T 1um8_A 177 GSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGL 256 (376)
T ss_dssp CCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTC
T ss_pred ccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCC
Confidence 541 34567776651 1135
Q ss_pred Chhhhccc-ceeeecCCCHHHHHHHHHH----H-------HH--hcCCCCCHHHHHHHHHhcC---CCHHHHHHHHHHHh
Q 020071 155 IEPIQSRC-AIVRFSRLSDEEILSRLMV----V-------VQ--EEKVPYVPEGLEAIIFTAD---GDMRQALNNLQATY 217 (331)
Q Consensus 155 ~~~l~sr~-~~i~~~~~~~~~~~~~l~~----~-------~~--~~~~~i~~~~~~~l~~~~~---g~~r~~~~~l~~~~ 217 (331)
.+.+.+|+ .++.|+|++.+++..++.. . .. ..++.++++++++|++.+. |+.|.+.+.++.+.
T Consensus 257 ~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~ 336 (376)
T 1um8_A 257 IPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFC 336 (376)
T ss_dssp CHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHH
T ss_pred ChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 68899998 7789999999999998862 1 11 1245689999999999865 99999999998653
Q ss_pred h-----C------CCccchhhhhhhc
Q 020071 218 S-----G------FRFVNQENVFKVC 232 (331)
Q Consensus 218 ~-----~------~~~i~~~~v~~~~ 232 (331)
. . ...||.+++.+..
T Consensus 337 ~~~~~~~~~~~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 337 LDIMFDLPKLKGSEVRITKDCVLKQA 362 (376)
T ss_dssp HHHHHTGGGGTTSEEEECHHHHTTSS
T ss_pred HHHHhhccCCCCCEEEEeHHHhcCCC
Confidence 1 1 1147777776643
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.74 E-value=3.1e-17 Score=161.15 Aligned_cols=183 Identities=18% Similarity=0.250 Sum_probs=136.8
Q ss_pred CccccCHHHHHHHHHHHHcCC-------CC--eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChH--hH
Q 020071 25 CDIVGNLDAVARLGIIARDGN-------MP--NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGID--VV 93 (331)
Q Consensus 25 ~~~ig~~~~~~~l~~~l~~~~-------~~--~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~i 93 (331)
.+++|++.++..+...+.... .| +++|+||+|+|||++|+++++.+.+. ..+++.++++...... ..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~~~~~ 568 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHSTSG 568 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSCCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhccccccccc
Confidence 468999999998888876421 12 59999999999999999999998544 4567888876542211 00
Q ss_pred HHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHH-----------hcCCcEEEEeeCCCCC---------
Q 020071 94 RNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEI-----------YSNSTRFALACNVSSK--------- 153 (331)
Q Consensus 94 ~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~-----------~~~~~~~I~~~~~~~~--------- 153 (331)
........ ..++.|++|||++.++.+.++.|++++++ ...++++|++||....
T Consensus 569 ~~l~~~~~-------~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~ 641 (758)
T 3pxi_A 569 GQLTEKVR-------RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGEL 641 (758)
T ss_dssp --CHHHHH-------HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHH
T ss_pred chhhHHHH-------hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHH
Confidence 11111111 12367999999999999999999999997 3457899999986443
Q ss_pred ---CChhhhccc-ceeeecCCCHHHHHHHHHHHHHh---------cCCCCCHHHHHHHHHh---cCCCHHHHHHHHHHH
Q 020071 154 ---IIEPIQSRC-AIVRFSRLSDEEILSRLMVVVQE---------EKVPYVPEGLEAIIFT---ADGDMRQALNNLQAT 216 (331)
Q Consensus 154 ---l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~---------~~~~i~~~~~~~l~~~---~~g~~r~~~~~l~~~ 216 (331)
+.+.+.+|+ .++.|+|++.+++..++...+.. ..+.++++++++|++. ..|+.|.+.+.++..
T Consensus 642 ~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~ 720 (758)
T 3pxi_A 642 KRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKH 720 (758)
T ss_dssp HHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHH
T ss_pred HhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHH
Confidence 789999999 78899999999999988776653 2456899999999875 257888888888754
No 65
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.72 E-value=9e-17 Score=158.01 Aligned_cols=180 Identities=18% Similarity=0.209 Sum_probs=135.2
Q ss_pred CccccCHHHHHHHHHHHHcC--------CC-CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCC------
Q 020071 25 CDIVGNLDAVARLGIIARDG--------NM-PNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRG------ 89 (331)
Q Consensus 25 ~~~ig~~~~~~~l~~~l~~~--------~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~------ 89 (331)
.+++|+++++..+...+... +. .+++|+||+|+|||++|+++++.+ +.+++.++++....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l-----~~~~~~i~~s~~~~~~~~~~ 532 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL-----GIELLRFDMSEYMERHTVSR 532 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH-----TCEEEEEEGGGCSSSSCCSS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh-----cCCEEEEechhhcchhhHhh
Confidence 46899999999887776532 12 259999999999999999999998 45677777654311
Q ss_pred --------h--HhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCcEEEEee
Q 020071 90 --------I--DVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS-----------NSTRFALAC 148 (331)
Q Consensus 90 --------~--~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~ 148 (331)
. +........+. ..++.|++|||++.++++.++.|+++|++.. .++++|+++
T Consensus 533 l~g~~~g~~g~~~~~~l~~~~~-------~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~ts 605 (758)
T 1r6b_X 533 LIGAPPGYVGFDQGGLLTDAVI-------KHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_dssp SCCCCSCSHHHHHTTHHHHHHH-------HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEE
T ss_pred hcCCCCCCcCccccchHHHHHH-------hCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEec
Confidence 0 01011111111 2347899999999999999999999999742 467789998
Q ss_pred CCCC-------------------------CCChhhhccc-ceeeecCCCHHHHHHHHHHHHHhc---------CCCCCHH
Q 020071 149 NVSS-------------------------KIIEPIQSRC-AIVRFSRLSDEEILSRLMVVVQEE---------KVPYVPE 193 (331)
Q Consensus 149 ~~~~-------------------------~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~---------~~~i~~~ 193 (331)
|... .+.+.+.+|+ .++.|+|++.+++..++...+.+. .+.++++
T Consensus 606 N~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 685 (758)
T 1r6b_X 606 NAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQE 685 (758)
T ss_dssp CSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHH
T ss_pred CcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHH
Confidence 8643 5678999999 678999999999999998877532 3468999
Q ss_pred HHHHHHHhc---CCCHHHHHHHHHHH
Q 020071 194 GLEAIIFTA---DGDMRQALNNLQAT 216 (331)
Q Consensus 194 ~~~~l~~~~---~g~~r~~~~~l~~~ 216 (331)
++++|++.. +++.|.+.+.++..
T Consensus 686 a~~~l~~~~~~~~~g~R~l~~~i~~~ 711 (758)
T 1r6b_X 686 ARNWLAEKGYDRAMGARPMARVIQDN 711 (758)
T ss_dssp HHHHHHHHHCBTTTBTTTHHHHHHHH
T ss_pred HHHHHHHhCCCcCCCchHHHHHHHHH
Confidence 999999876 45578888877654
No 66
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.71 E-value=6.8e-17 Score=149.81 Aligned_cols=187 Identities=19% Similarity=0.180 Sum_probs=136.5
Q ss_pred hhcCCCCCCccccCHHHHHHHHHHHHc------------CCC-CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEee
Q 020071 17 EKYRPTKVCDIVGNLDAVARLGIIARD------------GNM-PNLILAGPPGTGKTTSILALAHELLGPNYREAVMELN 83 (331)
Q Consensus 17 ~~~~p~~~~~~ig~~~~~~~l~~~l~~------------~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 83 (331)
+.+++..|++++|++..++.+...+.. ... .++|||||+|+|||++|+++++.+ +.+++.++
T Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~-----~~~fv~vn 270 (489)
T 3hu3_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLIN 270 (489)
T ss_dssp HHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC-----SSEEEEEE
T ss_pred cccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh-----CCCEEEEE
Confidence 466788999999999999999888763 122 349999999999999999999988 67888888
Q ss_pred cCCC----CC--hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHHHh--cCCcEE
Q 020071 84 ASDD----RG--IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA-----------GAQQALRRTMEIY--SNSTRF 144 (331)
Q Consensus 84 ~~~~----~~--~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~-----------~~~~~Ll~~le~~--~~~~~~ 144 (331)
+.+. .+ ...++..+..+. .+.+.++||||+|.+.. ..++.|++.|+.. +.++++
T Consensus 271 ~~~l~~~~~g~~~~~~~~~f~~A~-------~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 271 GPEIMSKLAGESESNLRKAFEEAE-------KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp HHHHHTSCTTHHHHHHHHHHHHHH-------HTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred chHhhhhhcchhHHHHHHHHHHHH-------hcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 6432 11 112333333322 23357999999976642 5678899999853 457788
Q ss_pred EEeeCCCCCCChhhhc--cc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Q 020071 145 ALACNVSSKIIEPIQS--RC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG-DMRQALNNLQAT 216 (331)
Q Consensus 145 I~~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g-~~r~~~~~l~~~ 216 (331)
|.+||.+..+.+.+++ |+ ..+.|++|+.++..++++.+++..... .+..+..++..+.| +.+.+.++++.+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s~~dL~~L~~~A 418 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEA 418 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCcHHHHHHHHHHH
Confidence 8899999899999998 55 358999999999999999887655433 22346778888877 444455554443
No 67
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.70 E-value=5.8e-17 Score=160.90 Aligned_cols=184 Identities=17% Similarity=0.209 Sum_probs=139.2
Q ss_pred CCccccCHHHHHHHHHHHHcCC--------C-CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhH-
Q 020071 24 VCDIVGNLDAVARLGIIARDGN--------M-PNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVV- 93 (331)
Q Consensus 24 ~~~~ig~~~~~~~l~~~l~~~~--------~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i- 93 (331)
+.+++|++.++..+...+.... . .+++|+||+|+|||++|+++++.+.+. ..+++.++++........
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~--~~~~i~i~~~~~~~~~~~s 634 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKHAVS 634 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS--GGGEEEECTTTCCSSGGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhccchhHHH
Confidence 3568999999999888876532 1 248999999999999999999998764 456788887654221100
Q ss_pred ---------------HHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhc-----------CCcEEEEe
Q 020071 94 ---------------RNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYS-----------NSTRFALA 147 (331)
Q Consensus 94 ---------------~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~ 147 (331)
........ ...+.++||||++.++.+.++.|++++++.. .++++|++
T Consensus 635 ~l~g~~~~~~G~~~~g~l~~~~~-------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~t 707 (854)
T 1qvr_A 635 RLIGAPPGYVGYEEGGQLTEAVR-------RRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILT 707 (854)
T ss_dssp GC--------------CHHHHHH-------HCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEE
T ss_pred HHcCCCCCCcCccccchHHHHHH-------hCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEe
Confidence 11111111 1236799999999999999999999999753 36678888
Q ss_pred eCC--------------------------CCCCChhhhccc-ceeeecCCCHHHHHHHHHHHHHh-------c--CCCCC
Q 020071 148 CNV--------------------------SSKIIEPIQSRC-AIVRFSRLSDEEILSRLMVVVQE-------E--KVPYV 191 (331)
Q Consensus 148 ~~~--------------------------~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~-------~--~~~i~ 191 (331)
||. ...+.+.+.+|+ .++.|.|++.+++..++...+.+ . .+.++
T Consensus 708 sn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~ 787 (854)
T 1qvr_A 708 SNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELT 787 (854)
T ss_dssp CCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEEC
T ss_pred cCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEEC
Confidence 885 234678889998 67799999999999998776652 1 34689
Q ss_pred HHHHHHHHHhcC---CCHHHHHHHHHHH
Q 020071 192 PEGLEAIIFTAD---GDMRQALNNLQAT 216 (331)
Q Consensus 192 ~~~~~~l~~~~~---g~~r~~~~~l~~~ 216 (331)
+++++.|++++- |++|.+.+.++..
T Consensus 788 ~~a~~~L~~~~~~~~gn~R~L~~~i~~~ 815 (854)
T 1qvr_A 788 EAAKDFLAERGYDPVFGARPLRRVIQRE 815 (854)
T ss_dssp HHHHHHHHHHHCBTTTBTSTHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCChHHHHHHHHHH
Confidence 999999999764 9999999998765
No 68
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.70 E-value=1.3e-16 Score=152.51 Aligned_cols=217 Identities=20% Similarity=0.228 Sum_probs=147.5
Q ss_pred chhhhcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC-----
Q 020071 14 PWVEKYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR----- 88 (331)
Q Consensus 14 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~----- 88 (331)
....+|+|..|++++|++++++.+...+..+. +++|+||+|+|||++|+.++..+.+.......+..+..+..
T Consensus 30 ~~~~~~rp~~l~~i~G~~~~l~~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~ 107 (604)
T 3k1j_A 30 TEEIEVPEKLIDQVIGQEHAVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIK 107 (604)
T ss_dssp GGGSCCCSSHHHHCCSCHHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEE
T ss_pred cCcccccccccceEECchhhHhhccccccCCC--EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEE
Confidence 35679999999999999999999999999885 69999999999999999999988654311111111100000
Q ss_pred -----ChHhH--------------------------------------------------HHHHHHHHhc-----cc---
Q 020071 89 -----GIDVV--------------------------------------------------RNKIKMFAQK-----KV--- 105 (331)
Q Consensus 89 -----~~~~i--------------------------------------------------~~~i~~~~~~-----~~--- 105 (331)
....+ .+.+...... ..
T Consensus 108 ~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g 187 (604)
T 3k1j_A 108 TVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTP 187 (604)
T ss_dssp EEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCC
T ss_pred EEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCcccc
Confidence 00011 1111000000 00
Q ss_pred --------CCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh---------------------cCCcEEEEeeCCC--CCC
Q 020071 106 --------TLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY---------------------SNSTRFALACNVS--SKI 154 (331)
Q Consensus 106 --------~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~---------------------~~~~~~I~~~~~~--~~l 154 (331)
.+....++++||||++.+++..++.|++.|++. +.++++|+++|.. ..+
T Consensus 188 ~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l 267 (604)
T 3k1j_A 188 AHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKM 267 (604)
T ss_dssp GGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHS
T ss_pred ccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhc
Confidence 000124569999999999999999999999842 2467899999875 678
Q ss_pred Chhhhcccc----eeeec---CCCHHHHHHHHHHHHHhc-----CCCCCHHHHHHHHHhc---CC-------CHHHHHHH
Q 020071 155 IEPIQSRCA----IVRFS---RLSDEEILSRLMVVVQEE-----KVPYVPEGLEAIIFTA---DG-------DMRQALNN 212 (331)
Q Consensus 155 ~~~l~sr~~----~i~~~---~~~~~~~~~~l~~~~~~~-----~~~i~~~~~~~l~~~~---~g-------~~r~~~~~ 212 (331)
.+++.+||. .+.|+ +...+.+..++...++.. ...++++++..|++++ .| ++|.+.+.
T Consensus 268 ~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~l 347 (604)
T 3k1j_A 268 HPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGI 347 (604)
T ss_dssp CHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHH
T ss_pred CHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHH
Confidence 999999995 34543 334556666665554432 2578999999998765 45 69999999
Q ss_pred HHHHh-----hCCCccchhhhhhhc
Q 020071 213 LQATY-----SGFRFVNQENVFKVC 232 (331)
Q Consensus 213 l~~~~-----~~~~~i~~~~v~~~~ 232 (331)
++.+. .+...|+.+++.++.
T Consensus 348 lr~A~~~A~~~~~~~I~~edv~~A~ 372 (604)
T 3k1j_A 348 VRAAGDIAVKKGKKYVEREDVIEAV 372 (604)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHhcCcccccHHHHHHHH
Confidence 87542 355678888887754
No 69
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.70 E-value=1.3e-15 Score=139.25 Aligned_cols=213 Identities=20% Similarity=0.185 Sum_probs=139.3
Q ss_pred hhhhcCCCCCCccccCHHHHHHHHHHH-Hc---C---CCCeEEE--eCCCCccHHHHHHHHHHHhcCC----CCCCceEE
Q 020071 15 WVEKYRPTKVCDIVGNLDAVARLGIIA-RD---G---NMPNLIL--AGPPGTGKTTSILALAHELLGP----NYREAVME 81 (331)
Q Consensus 15 ~~~~~~p~~~~~~ig~~~~~~~l~~~l-~~---~---~~~~~ll--~G~~G~GKt~la~~l~~~l~~~----~~~~~~~~ 81 (331)
+...|.| ++++|++..++.+...+ .. + ...++++ +||+|+|||++++.+++.+.+. +.+..++.
T Consensus 15 ~~~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 15 FDENYIP---PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp GSTTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCccCC---CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 3345555 67899999999888877 42 3 3334799 9999999999999999887431 11234566
Q ss_pred eecCCCCChHh-HHHHHHHHHhc-----------------ccCCCCCCceEEEEeCCCCCC------HHHHHHHHHHHHH
Q 020071 82 LNASDDRGIDV-VRNKIKMFAQK-----------------KVTLPPGKHKVVVLDEADSMT------AGAQQALRRTMEI 137 (331)
Q Consensus 82 ~~~~~~~~~~~-i~~~i~~~~~~-----------------~~~~~~~~~~vviide~d~l~------~~~~~~Ll~~le~ 137 (331)
+++........ +...+...... .+. ..+++.+|||||+|.+. .+....|++.+++
T Consensus 92 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~ 170 (412)
T 1w5s_A 92 VNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLY-VENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEE 170 (412)
T ss_dssp EEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHH-HHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHH
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH-hcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHh
Confidence 66533222211 11111111000 000 01346799999999874 3556667777776
Q ss_pred hc-----CCcEEEEeeCCCC---CCC---hhhhccc-ceeeecCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHhcC
Q 020071 138 YS-----NSTRFALACNVSS---KII---EPIQSRC-AIVRFSRLSDEEILSRLMVVVQEEK--VPYVPEGLEAIIFTAD 203 (331)
Q Consensus 138 ~~-----~~~~~I~~~~~~~---~l~---~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~--~~i~~~~~~~l~~~~~ 203 (331)
.+ ..+.+|++++... .+. +.+.+++ ..+.|+|++.+++.+++..++...+ ..+++++++.+++.++
T Consensus 171 ~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~ 250 (412)
T 1w5s_A 171 IPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYG 250 (412)
T ss_dssp SCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHC
T ss_pred cccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 54 5677888876543 222 4455553 3489999999999999988776432 3578999999999999
Q ss_pred ------CCHHHHHHHHHHHh-----hCCCccchhhhhhh
Q 020071 204 ------GDMRQALNNLQATY-----SGFRFVNQENVFKV 231 (331)
Q Consensus 204 ------g~~r~~~~~l~~~~-----~~~~~i~~~~v~~~ 231 (331)
|+++.+.+.++.+. .+...++.+++...
T Consensus 251 ~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~ 289 (412)
T 1w5s_A 251 EDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKA 289 (412)
T ss_dssp GGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHH
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 99999999887542 23345666666543
No 70
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.69 E-value=3e-16 Score=145.22 Aligned_cols=207 Identities=18% Similarity=0.204 Sum_probs=140.9
Q ss_pred hhhhcCCCCCCccccCHHHHHHHHHHHHc-----------CCCC-eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEe
Q 020071 15 WVEKYRPTKVCDIVGNLDAVARLGIIARD-----------GNMP-NLILAGPPGTGKTTSILALAHELLGPNYREAVMEL 82 (331)
Q Consensus 15 ~~~~~~p~~~~~~ig~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 82 (331)
|.+. .+.+|++++|+++++..+...+.. ...| +++|+||+|+|||+++++++..+ ..+++.+
T Consensus 22 ~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~-----~~~~i~i 95 (499)
T 2dhr_A 22 LTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-----RVPFITA 95 (499)
T ss_dssp ECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT-----TCCEEEE
T ss_pred eccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCEEEE
Confidence 4444 677999999999999988777542 1233 39999999999999999999988 5678888
Q ss_pred ecCCCCC--hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHHHh--cCCcEE
Q 020071 83 NASDDRG--IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA--------------GAQQALRRTMEIY--SNSTRF 144 (331)
Q Consensus 83 ~~~~~~~--~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~--------------~~~~~Ll~~le~~--~~~~~~ 144 (331)
++.+... .......+....+... ...+.+++|||+|.+.. ...+.|+..|+.. ...+++
T Consensus 96 ~g~~~~~~~~g~~~~~v~~lfq~a~---~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viv 172 (499)
T 2dhr_A 96 SGSDFVEMFVGVGAARVRDLFETAK---RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVV 172 (499)
T ss_dssp EGGGGTSSCTTHHHHHHHHHTTTSS---SSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEE
T ss_pred ehhHHHHhhhhhHHHHHHHHHHHHH---hcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEE
Confidence 8765321 1222223333332221 12357999999987632 2234555555432 234567
Q ss_pred EEeeCCCCCCChhhhccc---ceeeecCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCCCH-HHHHHHHHHHh--
Q 020071 145 ALACNVSSKIIEPIQSRC---AIVRFSRLSDEEILSRLMVVVQEEKVPYVPE-GLEAIIFTADGDM-RQALNNLQATY-- 217 (331)
Q Consensus 145 I~~~~~~~~l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~~~g~~-r~~~~~l~~~~-- 217 (331)
+.++|.+..+.+++.+++ ..+.+++|+.++..++++..++ ++.++++ .+..++..+.|+. +.+.+.++.++
T Consensus 173 iAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~ 250 (499)
T 2dhr_A 173 MAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALL 250 (499)
T ss_dssp EECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHH
T ss_pred EEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 777888888888998853 4689999999999999876553 3455544 3788999998877 77777776543
Q ss_pred ---hCCCccchhhhhhhc
Q 020071 218 ---SGFRFVNQENVFKVC 232 (331)
Q Consensus 218 ---~~~~~i~~~~v~~~~ 232 (331)
.+...|+.+++.+.+
T Consensus 251 A~~~~~~~It~~dl~~al 268 (499)
T 2dhr_A 251 AAREGRRKITMKDLEEAA 268 (499)
T ss_dssp HTTTCCSSCCSHHHHHHH
T ss_pred HHHhCCCccCHHHHHHHH
Confidence 234578888876543
No 71
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.67 E-value=2.4e-15 Score=128.47 Aligned_cols=206 Identities=18% Similarity=0.203 Sum_probs=134.0
Q ss_pred hhcCCCCCCccccCHHHHHHHHHHHHc-----------CCCC-eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeec
Q 020071 17 EKYRPTKVCDIVGNLDAVARLGIIARD-----------GNMP-NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNA 84 (331)
Q Consensus 17 ~~~~p~~~~~~ig~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 84 (331)
....+.+|++++|.++.+..+...... ...+ +++|+||+|+|||+++++++..+ ...++.+++
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~-----~~~~i~~~~ 82 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-----RVPFITASG 82 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT-----TCCEEEEEH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh-----CCCEEEeeH
Confidence 345567999999999998877665432 1222 39999999999999999999987 455676665
Q ss_pred CCCC--ChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC-----------H---HHHHHHHHHHHHhc--CCcEEEE
Q 020071 85 SDDR--GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT-----------A---GAQQALRRTMEIYS--NSTRFAL 146 (331)
Q Consensus 85 ~~~~--~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~-----------~---~~~~~Ll~~le~~~--~~~~~I~ 146 (331)
.+.. ........+....+... .....++++||+|.+. . ...+.++..++... ..+.++.
T Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~---~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a 159 (254)
T 1ixz_A 83 SDFVEMFVGVGAARVRDLFETAK---RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMA 159 (254)
T ss_dssp HHHHHSCTTHHHHHHHHHHHHHT---TSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEE
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH---hcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence 3210 01111222222222221 1235799999997652 1 12345555555322 2345666
Q ss_pred eeCCCCCCChhhhc--cc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCCCH-HHHHHHHHHHh----
Q 020071 147 ACNVSSKIIEPIQS--RC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPE-GLEAIIFTADGDM-RQALNNLQATY---- 217 (331)
Q Consensus 147 ~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~~~g~~-r~~~~~l~~~~---- 217 (331)
+++.+..+.+.+.+ |+ ..+.+++|+.++..++++..++ +..++++ .+..++..+.|+. +.+.+.++.++
T Consensus 160 ~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~ 237 (254)
T 1ixz_A 160 ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAA 237 (254)
T ss_dssp EESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred ccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 78888889999988 44 4579999999999999987654 3444443 3788999998855 66777766542
Q ss_pred -hCCCccchhhhhhhc
Q 020071 218 -SGFRFVNQENVFKVC 232 (331)
Q Consensus 218 -~~~~~i~~~~v~~~~ 232 (331)
.+...|+.+++.+++
T Consensus 238 ~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 238 REGRRKITMKDLEEAA 253 (254)
T ss_dssp HTTCSSBCHHHHHHHT
T ss_pred HhcCCCcCHHHHHHHh
Confidence 234568888877643
No 72
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.64 E-value=1.5e-14 Score=125.26 Aligned_cols=203 Identities=19% Similarity=0.209 Sum_probs=131.4
Q ss_pred CCCCCCccccCHHHHHHHHHHHHc-----------CCCC-eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC
Q 020071 20 RPTKVCDIVGNLDAVARLGIIARD-----------GNMP-NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD 87 (331)
Q Consensus 20 ~p~~~~~~ig~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (331)
.+.+|++++|+++.+..+...... ...+ +++|+||+|+|||+++++++..+ ...++.+++.+.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~-----~~~~i~~~~~~~ 109 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-----RVPFITASGSDF 109 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT-----TCCEEEEEHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc-----CCCEEEecHHHH
Confidence 566899999999998887766542 1222 48999999999999999999987 455677665321
Q ss_pred C--ChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHHHh-----cCCcEEEEeeC
Q 020071 88 R--GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT-----------AGAQQALRRTMEIY-----SNSTRFALACN 149 (331)
Q Consensus 88 ~--~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~-----------~~~~~~Ll~~le~~-----~~~~~~I~~~~ 149 (331)
. ........+....+... .....++++||+|.+. ......+..++.+. ...+.++.+++
T Consensus 110 ~~~~~~~~~~~i~~~~~~~~---~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~ 186 (278)
T 1iy2_A 110 VEMFVGVGAARVRDLFETAK---RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATN 186 (278)
T ss_dssp HHSTTTHHHHHHHHHHHHHH---TSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEES
T ss_pred HHHHhhHHHHHHHHHHHHHH---hcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecC
Confidence 0 01111222222222211 1235799999997552 12233333333322 22345666788
Q ss_pred CCCCCChhhhc--cc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCCCH-HHHHHHHHHHh-----hC
Q 020071 150 VSSKIIEPIQS--RC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPE-GLEAIIFTADGDM-RQALNNLQATY-----SG 219 (331)
Q Consensus 150 ~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~~~g~~-r~~~~~l~~~~-----~~ 219 (331)
.+..+.+.+.+ |+ ..+.|++|+.++..++++..++. ..++++ .+..++..+.|+. +.+.+.++.++ .+
T Consensus 187 ~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~ 264 (278)
T 1iy2_A 187 RPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG 264 (278)
T ss_dssp CTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc--CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 88889999988 44 46899999999999999877643 444443 3788999998866 56666666442 23
Q ss_pred CCccchhhhhhhc
Q 020071 220 FRFVNQENVFKVC 232 (331)
Q Consensus 220 ~~~i~~~~v~~~~ 232 (331)
...|+.+++.+++
T Consensus 265 ~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 265 RRKITMKDLEEAA 277 (278)
T ss_dssp CCSBCHHHHHHHT
T ss_pred CCCcCHHHHHHHh
Confidence 4568888877643
No 73
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.64 E-value=4.6e-16 Score=139.97 Aligned_cols=186 Identities=23% Similarity=0.287 Sum_probs=126.7
Q ss_pred ccccCHHHHHHHHHHHH-------------cC--CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCCh
Q 020071 26 DIVGNLDAVARLGIIAR-------------DG--NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGI 90 (331)
Q Consensus 26 ~~ig~~~~~~~l~~~l~-------------~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 90 (331)
.++|++.+++.+...+. .. ...+++|+||||+|||++|+++++.+ +.+++.+++......
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~-----~~~~~~~~~~~l~~~ 90 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL-----DVPFTMADATTLTEA 90 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT-----TCCEEEEEHHHHTTC
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCCEEEechHHhccc
Confidence 47999999999888873 11 22349999999999999999999998 677888887543221
Q ss_pred Hh----HHHHHHHHHhcc-cCCCCCCceEEEEeCCCCCCHH--------------HHHHHHHHHHHh-------------
Q 020071 91 DV----VRNKIKMFAQKK-VTLPPGKHKVVVLDEADSMTAG--------------AQQALRRTMEIY------------- 138 (331)
Q Consensus 91 ~~----i~~~i~~~~~~~-~~~~~~~~~vviide~d~l~~~--------------~~~~Ll~~le~~------------- 138 (331)
.. ....+....... .......+.++||||+|.++.. .++.|++.|+..
T Consensus 91 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~ 170 (363)
T 3hws_A 91 GYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHP 170 (363)
T ss_dssp HHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC-------------
T ss_pred ccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccC
Confidence 11 112222221111 0000124679999999988765 899999999921
Q ss_pred --------cCCcEEEEeeCCC----------CC-----------------------------------CChhhhccccee
Q 020071 139 --------SNSTRFALACNVS----------SK-----------------------------------IIEPIQSRCAIV 165 (331)
Q Consensus 139 --------~~~~~~I~~~~~~----------~~-----------------------------------l~~~l~sr~~~i 165 (331)
..+..||++++.. .+ +.+.+.+|+..+
T Consensus 171 ~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~ 250 (363)
T 3hws_A 171 QQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVV 250 (363)
T ss_dssp ---CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEE
T ss_pred CCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCee
Confidence 1234455555532 11 678899998776
Q ss_pred -eecCCCHHHHHHHHHH----HH-------HhcC--CCCCHHHHHHHHHh---cCCCHHHHHHHHHHH
Q 020071 166 -RFSRLSDEEILSRLMV----VV-------QEEK--VPYVPEGLEAIIFT---ADGDMRQALNNLQAT 216 (331)
Q Consensus 166 -~~~~~~~~~~~~~l~~----~~-------~~~~--~~i~~~~~~~l~~~---~~g~~r~~~~~l~~~ 216 (331)
.|.|++.+++.+++.. .. ...+ +.+++++++.|++. ..++.|.+.+.++.+
T Consensus 251 ~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~ 318 (363)
T 3hws_A 251 ATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAA 318 (363)
T ss_dssp EECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHH
Confidence 5999999998888764 21 2223 45799999999965 357788888888765
No 74
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.61 E-value=5.5e-15 Score=143.22 Aligned_cols=171 Identities=22% Similarity=0.248 Sum_probs=125.3
Q ss_pred CCCCCccccCHHHHHHHHHHHHc-----------C-CCC-eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC
Q 020071 21 PTKVCDIVGNLDAVARLGIIARD-----------G-NMP-NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD 87 (331)
Q Consensus 21 p~~~~~~ig~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (331)
...|+|+.|.++.++.|++.+.- | ..| ++|||||||||||++|+++++++ +.+++.+++++.
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el-----g~~~~~v~~~~l 274 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLINGPEI 274 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT-----TCEEEEEEHHHH
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh-----CCeEEEEEhHHh
Confidence 45899999999999988887642 2 233 39999999999999999999988 778888887543
Q ss_pred C----C--hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHHHhc--CCcEEEEee
Q 020071 88 R----G--IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA-----------GAQQALRRTMEIYS--NSTRFALAC 148 (331)
Q Consensus 88 ~----~--~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~-----------~~~~~Ll~~le~~~--~~~~~I~~~ 148 (331)
. + ...+++.+..+. ...+.||||||+|.+.. ...+.|+..|+... .++.+|.+|
T Consensus 275 ~sk~~gese~~lr~lF~~A~-------~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaT 347 (806)
T 3cf2_A 275 MSKLAGESESNLRKAFEEAE-------KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (806)
T ss_dssp HSSCTTHHHHHHHHHHHHHT-------TSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEEC
T ss_pred hcccchHHHHHHHHHHHHHH-------HcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEec
Confidence 1 1 123444443332 23478999999998842 24567777787543 457788889
Q ss_pred CCCCCCChhhhc--ccc-eeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Q 020071 149 NVSSKIIEPIQS--RCA-IVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADG 204 (331)
Q Consensus 149 ~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g 204 (331)
|.++.+.+++++ |+. .+.++.|+..+..++++..++..... ++..+..++..+.|
T Consensus 348 N~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~G 405 (806)
T 3cf2_A 348 NRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHG 405 (806)
T ss_dssp SSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCS
T ss_pred CChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCC
Confidence 999999999998 764 58999999999999998765443221 22346788888765
No 75
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.60 E-value=5.3e-15 Score=115.17 Aligned_cols=132 Identities=15% Similarity=0.148 Sum_probs=95.4
Q ss_pred ccccCHHHHHHHHHHHHc--CCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhc
Q 020071 26 DIVGNLDAVARLGIIARD--GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQK 103 (331)
Q Consensus 26 ~~ig~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 103 (331)
+++|++..+..+.+.+.. ....+++|+||+|+|||++|+++++..... +.+++ +++............+..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~--~~~~v-~~~~~~~~~~~~~~~~~~---- 74 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNA--QGEFV-YRELTPDNAPQLNDFIAL---- 74 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTT--TSCCE-EEECCTTTSSCHHHHHHH----
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCcc--CCCEE-EECCCCCcchhhhcHHHH----
Confidence 688999999988887754 233359999999999999999999875332 44667 777655332222222221
Q ss_pred ccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC-------CCCChhhhccc--ceeeecCC
Q 020071 104 KVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVS-------SKIIEPIQSRC--AIVRFSRL 170 (331)
Q Consensus 104 ~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~-------~~l~~~l~sr~--~~i~~~~~ 170 (331)
....+++|||+|.++.+.+..|+.+++..+.++++|+++|.. ..+.+.+..|+ ..+.++|+
T Consensus 75 ------a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 75 ------AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACLPL 144 (145)
T ss_dssp ------HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHHEEECCCC
T ss_pred ------cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCCEEeCCCC
Confidence 124699999999999999999999998878889999999864 34566777774 34666665
No 76
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.59 E-value=3.3e-14 Score=131.77 Aligned_cols=199 Identities=18% Similarity=0.167 Sum_probs=130.2
Q ss_pred CccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHH--HHHHH-H
Q 020071 25 CDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRN--KIKMF-A 101 (331)
Q Consensus 25 ~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~--~i~~~-~ 101 (331)
..++|+++++..+...+..+. |++|+||||+|||++|+++++.+.. ..++..+++.-. ....+.. ..... .
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l~~---~~~f~~~~~~~~-t~~dL~G~~~~~~~~~ 95 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQN---ARAFEYLMTRFS-TPEEVFGPLSIQALKD 95 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGBSS---CCEEEEECCTTC-CHHHHHCCBC------
T ss_pred hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHHhh---hhHHHHHHHhcC-CHHHhcCcccHHHHhh
Confidence 368999999999988888775 7999999999999999999998732 223333333211 1111100 00000 0
Q ss_pred hcccC-CCCC---CceEEEEeCCCCCCHHHHHHHHHHHHHhc---------CCc-EEEEeeCCCC---CCChhhhcccce
Q 020071 102 QKKVT-LPPG---KHKVVVLDEADSMTAGAQQALRRTMEIYS---------NST-RFALACNVSS---KIIEPIQSRCAI 164 (331)
Q Consensus 102 ~~~~~-~~~~---~~~vviide~d~l~~~~~~~Ll~~le~~~---------~~~-~~I~~~~~~~---~l~~~l~sr~~~ 164 (331)
...+. ...+ ...+++|||+++++++.++.|+..|++.. ... .+|++||... ...+++.+|+..
T Consensus 96 ~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~ 175 (500)
T 3nbx_X 96 EGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLI 175 (500)
T ss_dssp ----CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCCE
T ss_pred chhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHHHH
Confidence 00010 0011 34589999999999999999999998421 112 3477777532 245689999744
Q ss_pred -eeecCCCH-HHHHHHHHHHH-----------------------HhcCCCCCHHHHHHHHHhc----------CCCHHHH
Q 020071 165 -VRFSRLSD-EEILSRLMVVV-----------------------QEEKVPYVPEGLEAIIFTA----------DGDMRQA 209 (331)
Q Consensus 165 -i~~~~~~~-~~~~~~l~~~~-----------------------~~~~~~i~~~~~~~l~~~~----------~g~~r~~ 209 (331)
+.+++|+. ++...++.... ...++.++++.++++++.. +.+.|.+
T Consensus 176 ~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~ 255 (500)
T 3nbx_X 176 RLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRW 255 (500)
T ss_dssp EEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHH
T ss_pred HHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHH
Confidence 68888886 55666665432 1236778999999988766 5688887
Q ss_pred HHHHHHH---h--hCCCccchhhhh
Q 020071 210 LNNLQAT---Y--SGFRFVNQENVF 229 (331)
Q Consensus 210 ~~~l~~~---~--~~~~~i~~~~v~ 229 (331)
...+..+ + .+...++.+++.
T Consensus 256 ~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 256 KKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred HHHHHHHHHHHhhcCCccccchHHH
Confidence 7776533 2 567788999887
No 77
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.59 E-value=6.3e-14 Score=122.06 Aligned_cols=148 Identities=13% Similarity=0.155 Sum_probs=97.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC----CC--hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD----RG--IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADS 122 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~----~~--~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~ 122 (331)
+|||||||+|||++|+++++.+ +.+++.+++++. .+ ...+++.+..+....- ...+.|++|||+|.
T Consensus 39 lLl~GppGtGKT~la~aiA~~l-----~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~---~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIR---KGNMCCLFINDLDA 110 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH-----TCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHT---TSSCCCEEEECCC-
T ss_pred EEEECCCCCCHHHHHHHHHHHh-----CCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHh---cCCCeEEEEechhh
Confidence 8999999999999999999999 677888876432 11 1233344433321111 23467999999998
Q ss_pred CCH-------------HHHHHHHHHHHH-------------hcCCcEEEEeeCCCCCCChhhhc--ccceeeecCCCHHH
Q 020071 123 MTA-------------GAQQALRRTMEI-------------YSNSTRFALACNVSSKIIEPIQS--RCAIVRFSRLSDEE 174 (331)
Q Consensus 123 l~~-------------~~~~~Ll~~le~-------------~~~~~~~I~~~~~~~~l~~~l~s--r~~~i~~~~~~~~~ 174 (331)
+.. ..++.|+..++. ...++.+|++||.++.+.+++++ |+....+ .|+.++
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~-~P~~~~ 189 (293)
T 3t15_A 111 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRED 189 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE-CCCHHH
T ss_pred hcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe-CcCHHH
Confidence 754 234888888862 23468899999999999999986 6655434 459999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHH-HhcCCCHH
Q 020071 175 ILSRLMVVVQEEKVPYVPEGLEAII-FTADGDMR 207 (331)
Q Consensus 175 ~~~~l~~~~~~~~~~i~~~~~~~l~-~~~~g~~r 207 (331)
..++++......+ ++.+.+..+. ..++.++.
T Consensus 190 r~~Il~~~~~~~~--~~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 190 RIGVCTGIFRTDN--VPAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp HHHHHHHHHGGGC--CCHHHHHHHHHHSCSCCHH
T ss_pred HHHHHHHhccCCC--CCHHHHHHHhCCCCcccHH
Confidence 9999998877665 4455444444 44555654
No 78
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.56 E-value=7.7e-14 Score=126.65 Aligned_cols=105 Identities=20% Similarity=0.289 Sum_probs=78.7
Q ss_pred ceEEEEeCCCCCCH------------HHHHHHHHHHHHh----------cCCcEEEEee----CCCCCCChhhhcccce-
Q 020071 112 HKVVVLDEADSMTA------------GAQQALRRTMEIY----------SNSTRFALAC----NVSSKIIEPIQSRCAI- 164 (331)
Q Consensus 112 ~~vviide~d~l~~------------~~~~~Ll~~le~~----------~~~~~~I~~~----~~~~~l~~~l~sr~~~- 164 (331)
..++++||+|++.. ..|++|++++|.. ..++.||+++ .++..+.|.+.+|+.+
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~ 330 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIR 330 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEE
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhccccee
Confidence 45899999998853 2678999999942 3456677776 2455577999999987
Q ss_pred eeecCCCHHHHHHHHHH-----------HHHhcC--CCCCHHHHHHHHHh--------cCCCHHHHHHHHHHH
Q 020071 165 VRFSRLSDEEILSRLMV-----------VVQEEK--VPYVPEGLEAIIFT--------ADGDMRQALNNLQAT 216 (331)
Q Consensus 165 i~~~~~~~~~~~~~l~~-----------~~~~~~--~~i~~~~~~~l~~~--------~~g~~r~~~~~l~~~ 216 (331)
+.|++++.+++.+++.. .+..++ +.++++++..|++. -+...|.+.+.++++
T Consensus 331 i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~ 403 (444)
T 1g41_A 331 VELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERL 403 (444)
T ss_dssp EECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHH
T ss_pred eeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHH
Confidence 79999999999999831 222233 45799999999985 356788887777755
No 79
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.53 E-value=1.1e-14 Score=141.00 Aligned_cols=180 Identities=20% Similarity=0.210 Sum_probs=116.2
Q ss_pred CCCCCccccCHHHHHHHHHHHHc-----------C-CCC-eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC
Q 020071 21 PTKVCDIVGNLDAVARLGIIARD-----------G-NMP-NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD 87 (331)
Q Consensus 21 p~~~~~~ig~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (331)
...|+++.|.+++++.|...+.. | ..+ .+|||||||||||.+|++++.++ +.+++.++.++.
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~-----~~~f~~v~~~~l 547 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKGPEL 547 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT-----TCEEEECCHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh-----CCceEEeccchh
Confidence 34799999999999998877642 2 122 39999999999999999999998 778887765432
Q ss_pred ------CChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHHHhc--CCcEEE
Q 020071 88 ------RGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA--------------GAQQALRRTMEIYS--NSTRFA 145 (331)
Q Consensus 88 ------~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~--------------~~~~~Ll~~le~~~--~~~~~I 145 (331)
.+...+++.+..+... .+.||||||+|.+.. ...+.|+..|+... .++.+|
T Consensus 548 ~s~~vGese~~vr~lF~~Ar~~-------~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi 620 (806)
T 3cf2_A 548 LTMWFGESEANVREIFDKARQA-------APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFII 620 (806)
T ss_dssp HTTTCSSCHHHHHHHHHHHHTT-------CSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEE
T ss_pred hccccchHHHHHHHHHHHHHHc-------CCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEE
Confidence 2334566666655432 367999999998842 12567888888433 456677
Q ss_pred EeeCCCCCCChhhhc--cc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhc----CCCHHHHHHHH
Q 020071 146 LACNVSSKIIEPIQS--RC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTA----DGDMRQALNNL 213 (331)
Q Consensus 146 ~~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~----~g~~r~~~~~l 213 (331)
.+||.+..+.+++.+ |+ ..+.|++|+.++..++++..+++..+. ++..++.|++.+ +.|+..+++..
T Consensus 621 ~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SGadi~~l~~~A 694 (806)
T 3cf2_A 621 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRA 694 (806)
T ss_dssp CC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------CHHHHHHHH
T ss_pred EeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 788999999999988 77 457899998888888887766544322 223356666554 55777666554
No 80
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.53 E-value=1.6e-15 Score=144.12 Aligned_cols=157 Identities=20% Similarity=0.199 Sum_probs=97.0
Q ss_pred CccccCHHHHHHHHHHHHcCCCC-----------eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhH
Q 020071 25 CDIVGNLDAVARLGIIARDGNMP-----------NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVV 93 (331)
Q Consensus 25 ~~~ig~~~~~~~l~~~l~~~~~~-----------~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i 93 (331)
..++|++.++..+...+.+|..+ |+||+||||+|||++|+++++.+....+... ...++.+..+ ...
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~-~~~~~~~l~~-~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTG-KGSTAAGLTA-AVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCT-TCSTTTTSEE-ECS
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCC-Cccccccccc-eee
Confidence 46889999988887777766322 6999999999999999999987732111000 0011111100 000
Q ss_pred HHHHH-HHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh-------------cCCcEEEEeeCCCC-------
Q 020071 94 RNKIK-MFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY-------------SNSTRFALACNVSS------- 152 (331)
Q Consensus 94 ~~~i~-~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~-------------~~~~~~I~~~~~~~------- 152 (331)
.+... .+...+..+..+.+.+++|||+|.++.+.+++|++.||+. +.++.+|.++|...
T Consensus 373 ~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~ 452 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISER 452 (595)
T ss_dssp SGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTS
T ss_pred eccccccccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCccc
Confidence 00000 0000000000123579999999999999999999999852 34677888888764
Q ss_pred ------CCChhhhccc-ceeeecCCCHHHHHHHHHHHH
Q 020071 153 ------KIIEPIQSRC-AIVRFSRLSDEEILSRLMVVV 183 (331)
Q Consensus 153 ------~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~ 183 (331)
.+.+++.+|+ ..+.+.+++..+...+.+...
T Consensus 453 ~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il 490 (595)
T 3f9v_A 453 PVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYIL 490 (595)
T ss_dssp CSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHH
T ss_pred CchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHH
Confidence 7889999999 455566665555333344333
No 81
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.51 E-value=1.7e-14 Score=112.03 Aligned_cols=128 Identities=13% Similarity=0.150 Sum_probs=89.5
Q ss_pred ccccCHHHHHHHHHHHHc--CCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhc
Q 020071 26 DIVGNLDAVARLGIIARD--GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQK 103 (331)
Q Consensus 26 ~~ig~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 103 (331)
+++|++..++.+.+.+.. ....+++|+||+|+|||++|+++++.. . +++.+++..... +.....+.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~-----~-~~~~~~~~~~~~-~~~~~~~~----- 72 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG-----T-PWVSPARVEYLI-DMPMELLQ----- 72 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT-----S-CEECCSSTTHHH-HCHHHHHH-----
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC-----C-CeEEechhhCCh-HhhhhHHH-----
Confidence 588999999888888764 233459999999999999999998865 3 788888775311 11112211
Q ss_pred ccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh-cCCcEEEEeeCCC-CC----CChhhhcccc--eeeecCC
Q 020071 104 KVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY-SNSTRFALACNVS-SK----IIEPIQSRCA--IVRFSRL 170 (331)
Q Consensus 104 ~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~-~~~~~~I~~~~~~-~~----l~~~l~sr~~--~i~~~~~ 170 (331)
..+..+++|||++.++.+.+..|++++++. +.++++|+++|.. .. +.+.+..|+. .+.++|+
T Consensus 73 -----~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 73 -----KAEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSDGISCEEKLAGLFSESVVRIPPL 142 (143)
T ss_dssp -----HTTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--CHHHHHHHHSSSEEEEECCC
T ss_pred -----hCCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhCccHHHHHHhcCcEEeCCCC
Confidence 123569999999999999999999999975 4568899998754 23 3345556643 3566665
No 82
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.50 E-value=1.3e-12 Score=112.57 Aligned_cols=174 Identities=21% Similarity=0.200 Sum_probs=109.5
Q ss_pred CCCCCCccccCHHHHHHHHHHHHc------------CCCC-eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCC
Q 020071 20 RPTKVCDIVGNLDAVARLGIIARD------------GNMP-NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASD 86 (331)
Q Consensus 20 ~p~~~~~~ig~~~~~~~l~~~l~~------------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (331)
...+|+|+.|.+++++.+...+.. -..+ +++|+||+|+|||+++++++..+ +..++.+++.+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~-----~~~~i~i~g~~ 79 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES-----GLNFISVKGPE 79 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT-----TCEEEEEETTT
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc-----CCCEEEEEcHH
Confidence 346899999999999988775421 1222 39999999999999999999987 55678888766
Q ss_pred CCC--hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHHHh--cCCcEEEEeeCCC
Q 020071 87 DRG--IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA-----------GAQQALRRTMEIY--SNSTRFALACNVS 151 (331)
Q Consensus 87 ~~~--~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~-----------~~~~~Ll~~le~~--~~~~~~I~~~~~~ 151 (331)
... .......+....+... ...+.++++||++.+.. ...+.++..|+.. ...+.++.++|.+
T Consensus 80 l~~~~~~~~~~~i~~vf~~a~---~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p 156 (274)
T 2x8a_A 80 LLNMYVGESERAVRQVFQRAK---NSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRP 156 (274)
T ss_dssp TCSSTTHHHHHHHHHHHHHHH---HTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCG
T ss_pred HHhhhhhHHHHHHHHHHHHHH---hcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCCh
Confidence 532 1222222332222211 12356999999998632 1234555555532 2345566778889
Q ss_pred CCCChhhhc--cc-ceeeecCCCHHHHHHHHHHHHHhc-CCCCC-HHHHHHHHHh
Q 020071 152 SKIIEPIQS--RC-AIVRFSRLSDEEILSRLMVVVQEE-KVPYV-PEGLEAIIFT 201 (331)
Q Consensus 152 ~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~-~~~i~-~~~~~~l~~~ 201 (331)
..+.+++++ |+ ..+.+++|+.++..++++...+.. ...++ +..++.++..
T Consensus 157 ~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~ 211 (274)
T 2x8a_A 157 DIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGD 211 (274)
T ss_dssp GGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTC
T ss_pred hhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHh
Confidence 999999987 76 457899999999999998876432 22222 2235666653
No 83
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.49 E-value=5.8e-13 Score=119.47 Aligned_cols=189 Identities=16% Similarity=0.209 Sum_probs=132.0
Q ss_pred CccccCHHHHHHHHHHHHc--CCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHh
Q 020071 25 CDIVGNLDAVARLGIIARD--GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQ 102 (331)
Q Consensus 25 ~~~ig~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 102 (331)
.+++|++..+..+...+.. ....+++++|++|+||+.+|+.++...... ..++.+||.... .+.+...+-....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~---~~fv~vnc~~~~-~~~~~~~lfg~~~ 204 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRK---GAFVDLNCASIP-QELAESELFGHEK 204 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCC---SCEEEEESSSSC-TTTHHHHHHEECS
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcccc---CCcEEEEcccCC-hHHHHHHhcCccc
Confidence 4678888877766655533 122249999999999999999999876432 238999998652 2222222211111
Q ss_pred cccCCC---------CCCceEEEEeCCCCCCHHHHHHHHHHHHHh-----------cCCcEEEEeeCCC-------CCCC
Q 020071 103 KKVTLP---------PGKHKVVVLDEADSMTAGAQQALRRTMEIY-----------SNSTRFALACNVS-------SKII 155 (331)
Q Consensus 103 ~~~~~~---------~~~~~vviide~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~~~~-------~~l~ 155 (331)
..++-. .++++++++||++.++...|..|++++++. +.++++|.+||.. ..+.
T Consensus 205 g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr 284 (368)
T 3dzd_A 205 GAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFR 284 (368)
T ss_dssp CSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSC
T ss_pred cccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCcc
Confidence 111100 134679999999999999999999999963 2367899998863 3566
Q ss_pred hhhhcccce--eeecCCCH--HHHHHHHHHH----HHhcC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHh
Q 020071 156 EPIQSRCAI--VRFSRLSD--EEILSRLMVV----VQEEK---VPYVPEGLEAIIFTA-DGDMRQALNNLQATY 217 (331)
Q Consensus 156 ~~l~sr~~~--i~~~~~~~--~~~~~~l~~~----~~~~~---~~i~~~~~~~l~~~~-~g~~r~~~~~l~~~~ 217 (331)
+.+..|+.+ +.++|+.+ +++..++... +.+.+ ..+++++++.|..+. .||+|++.|.++.++
T Consensus 285 ~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~ 358 (368)
T 3dzd_A 285 EDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAV 358 (368)
T ss_dssp HHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 778888665 56888887 5655544443 33334 458999999999988 899999999999875
No 84
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.49 E-value=2.1e-12 Score=115.13 Aligned_cols=180 Identities=13% Similarity=0.083 Sum_probs=122.1
Q ss_pred CCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC------ChHh----
Q 020071 23 KVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR------GIDV---- 92 (331)
Q Consensus 23 ~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~------~~~~---- 92 (331)
.-..++|+++.+..|.+.+..+ +.++++||+|+|||++++.+++.. + ++.+++.... ....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER-----P--GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS-----S--EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc-----C--cEEEEeecccccccCCCHHHHHHH
Confidence 3457899999999999999876 468999999999999999999875 2 3333332110 1111
Q ss_pred --------------------------------HHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH-------HHHHHHHH
Q 020071 93 --------------------------------VRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA-------GAQQALRR 133 (331)
Q Consensus 93 --------------------------------i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~-------~~~~~Ll~ 133 (331)
+.+.+........ ..++.+++|||++.+.. +....|..
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~ 157 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGE---ELGEFIVAFDEAQYLRFYGSRGGKELLALFAY 157 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHH---HHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHh---ccCCEEEEEeCHHHHhccCccchhhHHHHHHH
Confidence 1111111111000 01267999999999753 34455555
Q ss_pred HHHHhcCCcEEEEeeCCCC---------CCChhhhccc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcC
Q 020071 134 TMEIYSNSTRFALACNVSS---------KIIEPIQSRC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTAD 203 (331)
Q Consensus 134 ~le~~~~~~~~I~~~~~~~---------~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~ 203 (331)
.++.. .++.+|+++.... .....+..|. ..+.+.|++.++..+++...+...+..++++.+..+...++
T Consensus 158 ~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tg 236 (350)
T 2qen_A 158 AYDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLD 236 (350)
T ss_dssp HHHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHT
T ss_pred HHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 55553 4677888765421 1122344344 57899999999999999988877788889999999999999
Q ss_pred CCHHHHHHHHHH
Q 020071 204 GDMRQALNNLQA 215 (331)
Q Consensus 204 g~~r~~~~~l~~ 215 (331)
|++..+......
T Consensus 237 G~P~~l~~~~~~ 248 (350)
T 2qen_A 237 GIPGWLVVFGVE 248 (350)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999876655544
No 85
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.46 E-value=4.1e-12 Score=114.84 Aligned_cols=203 Identities=16% Similarity=0.165 Sum_probs=138.7
Q ss_pred CCccccCHHHHHHHHHHHHcC--CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHH
Q 020071 24 VCDIVGNLDAVARLGIIARDG--NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFA 101 (331)
Q Consensus 24 ~~~~ig~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 101 (331)
+..++|....+..+.+.+..- ...+++++|++|+||+.+|+.++...... ..+|+.+||... ..+.+...+-...
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~--~~~fv~v~~~~~-~~~~~~~elfg~~ 212 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRS--KEPFVALNVASI-PRDIFEAELFGYE 212 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTT--TSCEEEEETTTS-CHHHHHHHHHCBC
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCC--CCCeEEEecCCC-CHHHHHHHhcCCC
Confidence 567888888888777666542 11238999999999999999999875332 467999999875 2222222221111
Q ss_pred hcccCCC---------CCCceEEEEeCCCCCCHHHHHHHHHHHHHh-----------cCCcEEEEeeCCC-------CCC
Q 020071 102 QKKVTLP---------PGKHKVVVLDEADSMTAGAQQALRRTMEIY-----------SNSTRFALACNVS-------SKI 154 (331)
Q Consensus 102 ~~~~~~~---------~~~~~vviide~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~~~~-------~~l 154 (331)
...++-. ..+++++++||++.++.+.|..|++++++. +.++++|++||.. ..+
T Consensus 213 ~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~f 292 (387)
T 1ny5_A 213 KGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKF 292 (387)
T ss_dssp TTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSS
T ss_pred CCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCc
Confidence 1111100 134679999999999999999999999962 2477899998863 355
Q ss_pred Chhhhcccc--eeeecCCCH--HHHHHHHHH----HHHhcCC---CCCHHHHHHHHHhc-CCCHHHHHHHHHHHh--hCC
Q 020071 155 IEPIQSRCA--IVRFSRLSD--EEILSRLMV----VVQEEKV---PYVPEGLEAIIFTA-DGDMRQALNNLQATY--SGF 220 (331)
Q Consensus 155 ~~~l~sr~~--~i~~~~~~~--~~~~~~l~~----~~~~~~~---~i~~~~~~~l~~~~-~g~~r~~~~~l~~~~--~~~ 220 (331)
.+.+-.|.. .+.++|+.+ +++..++.. .+.+.+. .+++++++.+..+. .||+|.+.+.++.++ ..+
T Consensus 293 r~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~~~ 372 (387)
T 1ny5_A 293 REDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEG 372 (387)
T ss_dssp CHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCCS
T ss_pred cHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCCC
Confidence 666666653 457777765 555544443 3344443 47899999999877 899999999998764 334
Q ss_pred Cccchhhhh
Q 020071 221 RFVNQENVF 229 (331)
Q Consensus 221 ~~i~~~~v~ 229 (331)
..|+.+++-
T Consensus 373 ~~i~~~~l~ 381 (387)
T 1ny5_A 373 KFIDRGELS 381 (387)
T ss_dssp SEECHHHHH
T ss_pred CcCcHHHCc
Confidence 467766553
No 86
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.42 E-value=5.9e-13 Score=130.89 Aligned_cols=182 Identities=18% Similarity=0.202 Sum_probs=126.4
Q ss_pred hcCCCCCCccccCHHHHHHHHHHHHc-----------C-CC-CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeec
Q 020071 18 KYRPTKVCDIVGNLDAVARLGIIARD-----------G-NM-PNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNA 84 (331)
Q Consensus 18 ~~~p~~~~~~ig~~~~~~~l~~~l~~-----------~-~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 84 (331)
.+.+..|++++|++..++.+..++.. + .. .+++|+||+|+|||++|++++..+ +.+++.+++
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l-----~~~~i~v~~ 271 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLING 271 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT-----TCEEEEEEH
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc-----CCcEEEEEc
Confidence 45677999999999999999888764 2 22 249999999999999999999987 667788876
Q ss_pred CCCCC--hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHHHh--cCCcEEEEeeC
Q 020071 85 SDDRG--IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA-----------GAQQALRRTMEIY--SNSTRFALACN 149 (331)
Q Consensus 85 ~~~~~--~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~-----------~~~~~Ll~~le~~--~~~~~~I~~~~ 149 (331)
.+..+ .......+....+.+. .....++++||++.+.. ...+.|+..++.. ...+.+|+++|
T Consensus 272 ~~l~~~~~g~~~~~l~~vf~~a~---~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn 348 (806)
T 1ypw_A 272 PEIMSKLAGESESNLRKAFEEAE---KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (806)
T ss_dssp HHHSSSSTTHHHHHHHHHHHHHH---HHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECS
T ss_pred hHhhhhhhhhHHHHHHHHHHHHH---hcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccC
Confidence 43211 1122222222222221 12357999999987742 3456778888743 34678888899
Q ss_pred CCCCCChhhhc--cc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHH
Q 020071 150 VSSKIIEPIQS--RC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQ 208 (331)
Q Consensus 150 ~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~ 208 (331)
.+..+.+.+++ |+ ..+.+..|+.++..++++..+....+. ++..+..++..+.|..+.
T Consensus 349 ~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~g~ 409 (806)
T 1ypw_A 349 RPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGA 409 (806)
T ss_dssp CTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHSCSSCCHH
T ss_pred CchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHhhcCcchH
Confidence 99999999987 66 457999999999999998776544322 222356677777665443
No 87
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.40 E-value=1e-11 Score=110.78 Aligned_cols=177 Identities=19% Similarity=0.166 Sum_probs=117.8
Q ss_pred CCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC-----CChHhH----
Q 020071 23 KVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD-----RGIDVV---- 93 (331)
Q Consensus 23 ~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-----~~~~~i---- 93 (331)
..+.++|+++.+..|.. +.. +.++++||+|+|||++++.+++... ..++.+++... .....+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN-----LPYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT-----CCEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC-----CCEEEEEchhhccccCCCHHHHHHHH
Confidence 44678999999999998 765 5689999999999999999999873 23444444321 111111
Q ss_pred -------------------------------------------HHHHHHHHhcccCCCCCCceEEEEeCCCCCCH----H
Q 020071 94 -------------------------------------------RNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA----G 126 (331)
Q Consensus 94 -------------------------------------------~~~i~~~~~~~~~~~~~~~~vviide~d~l~~----~ 126 (331)
.+.+....... . ++.+++|||+|.+.. +
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~-~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQAS----K-DNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTC----S-SCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcC----C-CCeEEEEECHHHhhccCchh
Confidence 11111111100 1 367999999999753 2
Q ss_pred HHHHHHHHHHHhcCCcEEEEeeCCCC---------CCChhhhccc-ceeeecCCCHHHHHHHHHHHHHhcCCCCCHHHHH
Q 020071 127 AQQALRRTMEIYSNSTRFALACNVSS---------KIIEPIQSRC-AIVRFSRLSDEEILSRLMVVVQEEKVPYVPEGLE 196 (331)
Q Consensus 127 ~~~~Ll~~le~~~~~~~~I~~~~~~~---------~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~ 196 (331)
....|....+.. .++.+|+++.... .....+..|. ..+.+.|++.++..+++...+...+...++. .
T Consensus 157 ~~~~l~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~--~ 233 (357)
T 2fna_A 157 LLPALAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY--E 233 (357)
T ss_dssp CHHHHHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH--H
T ss_pred HHHHHHHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH--H
Confidence 334454455543 3677888876531 1122344454 6889999999999999998876666666544 8
Q ss_pred HHHHhcCCCHHHHHHHHHHH
Q 020071 197 AIIFTADGDMRQALNNLQAT 216 (331)
Q Consensus 197 ~l~~~~~g~~r~~~~~l~~~ 216 (331)
.+...++|++..+......+
T Consensus 234 ~i~~~t~G~P~~l~~~~~~~ 253 (357)
T 2fna_A 234 VVYEKIGGIPGWLTYFGFIY 253 (357)
T ss_dssp HHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHH
Confidence 89999999999876666554
No 88
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.36 E-value=1e-14 Score=143.29 Aligned_cols=155 Identities=20% Similarity=0.200 Sum_probs=111.0
Q ss_pred cCCCCCCccccCHHHHHHHHHHHHc-----------C--CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecC
Q 020071 19 YRPTKVCDIVGNLDAVARLGIIARD-----------G--NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNAS 85 (331)
Q Consensus 19 ~~p~~~~~~ig~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 85 (331)
.....|+++.|.+.+++.+...+.. + ...+++|+||||+|||++|++++..+ +.+++.+++.
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~-----~~~~i~v~~~ 545 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKGP 545 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH-----TCCCCCCCCS
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh-----CCCEEEEech
Confidence 3455899999999999999887653 1 12248999999999999999999998 5566666665
Q ss_pred CCC------ChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCC--------------HHHHHHHHHHHHH--hcCCcE
Q 020071 86 DDR------GIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMT--------------AGAQQALRRTMEI--YSNSTR 143 (331)
Q Consensus 86 ~~~------~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~--------------~~~~~~Ll~~le~--~~~~~~ 143 (331)
+.. ....++..++...... +.++||||+|.+. ....+.|+..|+. ...++.
T Consensus 546 ~l~~~~~g~~~~~i~~~f~~a~~~~-------p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~ 618 (806)
T 1ypw_A 546 ELLTMWFGESEANVREIFDKARQAA-------PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618 (806)
T ss_dssp SSTTCCTTTSSHHHHHHHHHHHHHC-------SBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred HhhhhhcCccHHHHHHHHHHHHhcC-------CeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeE
Confidence 532 1234444544443322 4699999998763 1234556666653 234677
Q ss_pred EEEeeCCCCCCChhhhc--ccc-eeeecCCCHHHHHHHHHHHHHh
Q 020071 144 FALACNVSSKIIEPIQS--RCA-IVRFSRLSDEEILSRLMVVVQE 185 (331)
Q Consensus 144 ~I~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~ 185 (331)
+|++||.++.+.+++.+ |+. .+.|++|+.++...+++..+++
T Consensus 619 vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~ 663 (806)
T 1ypw_A 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp CCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSC
T ss_pred EEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhcc
Confidence 88889999999999998 885 7899999999999998876643
No 89
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.35 E-value=2.7e-12 Score=103.48 Aligned_cols=130 Identities=16% Similarity=0.188 Sum_probs=82.9
Q ss_pred hhcCCCCCCcccc----CHHHHHHHHHHHHcCCC---CeEEEeCCCCccHHHHHHHHHHHhc-CCCCCCceEEeecCCCC
Q 020071 17 EKYRPTKVCDIVG----NLDAVARLGIIARDGNM---PNLILAGPPGTGKTTSILALAHELL-GPNYREAVMELNASDDR 88 (331)
Q Consensus 17 ~~~~p~~~~~~ig----~~~~~~~l~~~l~~~~~---~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~ 88 (331)
++|++.+|+++++ +.+++..+..++.+... ..++|+||+|+|||+++++++..+. ..+. .++.++..+
T Consensus 2 ~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~--~~~~~~~~~-- 77 (180)
T 3ec2_A 2 KRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI--RGYFFDTKD-- 77 (180)
T ss_dssp CSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC--CCCEEEHHH--
T ss_pred chhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC--eEEEEEHHH--
Confidence 6899999999986 45666677777766433 2389999999999999999999874 2221 222232211
Q ss_pred ChHhHHHHHHHHHhcccC---CCCCCceEEEEeCCC--CCCHHHHHHHHHHHHHhc-CCcEEEEeeCCCCC
Q 020071 89 GIDVVRNKIKMFAQKKVT---LPPGKHKVVVLDEAD--SMTAGAQQALRRTMEIYS-NSTRFALACNVSSK 153 (331)
Q Consensus 89 ~~~~i~~~i~~~~~~~~~---~~~~~~~vviide~d--~l~~~~~~~Ll~~le~~~-~~~~~I~~~~~~~~ 153 (331)
.+......+...... ....+..++||||++ .++....+.|..+++... .+..+|++||....
T Consensus 78 ---~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 78 ---LIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp ---HHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred ---HHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 111111111110000 001246799999998 567777888888887643 56778888887644
No 90
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=99.24 E-value=5.3e-11 Score=100.50 Aligned_cols=133 Identities=18% Similarity=0.197 Sum_probs=88.3
Q ss_pred HHHHHHHHcC-C-CCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcccCCCC-CC
Q 020071 35 ARLGIIARDG-N-MPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPP-GK 111 (331)
Q Consensus 35 ~~l~~~l~~~-~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~-~~ 111 (331)
..+..++++. . ..+++||||||+|||.++.++++.+. . +..++.... .+.+.. .+
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~-----l-~G~vn~~~~----------------~f~l~~~~~ 148 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVP-----F-YGCVNWTNE----------------NFPFNDCVD 148 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSS-----C-EEECCTTCS----------------SCTTGGGSS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhc-----c-cceeecccc----------------ccccccccc
Confidence 3466666654 2 23499999999999999999999752 1 222222211 011111 23
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHH--------Hhc-----CCcEEEEeeCCC-----------CCCChhhhcccceeee
Q 020071 112 HKVVVLDEADSMTAGAQQALRRTME--------IYS-----NSTRFALACNVS-----------SKIIEPIQSRCAIVRF 167 (331)
Q Consensus 112 ~~vviide~d~l~~~~~~~Ll~~le--------~~~-----~~~~~I~~~~~~-----------~~l~~~l~sr~~~i~~ 167 (331)
+++++.||+ .+..+.++.+.++++ ... ..+++|++||.. ....+.|+||+.++.|
T Consensus 149 k~i~l~Ee~-~~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~~f~F 227 (267)
T 1u0j_A 149 KMVIWWEEG-KMTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFEL 227 (267)
T ss_dssp CSEEEECSC-CEETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEEEEC
T ss_pred cEEEEeccc-cchhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhEEEEEC
Confidence 455555555 455567778888887 322 567899999871 2566899999999999
Q ss_pred c--------CCCHHHHHHHHHHHHHhcCCCCC
Q 020071 168 S--------RLSDEEILSRLMVVVQEEKVPYV 191 (331)
Q Consensus 168 ~--------~~~~~~~~~~l~~~~~~~~~~i~ 191 (331)
. +++++++..++... +.+..+++
T Consensus 228 ~~~~p~~~~~lt~~~~~~f~~w~-~~~~~~~~ 258 (267)
T 1u0j_A 228 TRRLDHDFGKVTKQEVKDFFRWA-KDHVVEVE 258 (267)
T ss_dssp CSCCCTTSCCCCHHHHHHHHHHH-HHTCCCCC
T ss_pred CCcCCcccCCCCHHHHHHHHHHH-HHcCCCCc
Confidence 9 89999999999844 56665543
No 91
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.18 E-value=5.2e-11 Score=110.19 Aligned_cols=139 Identities=13% Similarity=0.114 Sum_probs=81.4
Q ss_pred CCCCCCCCchhhhcCCCCCCccc-cCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeec
Q 020071 6 SSSSAYDIPWVEKYRPTKVCDIV-GNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNA 84 (331)
Q Consensus 6 ~~~~~~~~~~~~~~~p~~~~~~i-g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 84 (331)
+.-..+..||..||||++|+++- +|.+++..+...+.++.. ++++.|++|+|||+++..+++.+.+.+. ..++.+.+
T Consensus 5 ~~~~~~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~-~~li~G~aGTGKT~ll~~~~~~l~~~~~-~~il~~a~ 82 (459)
T 3upu_A 5 HHHHHHSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKH-HVTINGPAGTGATTLTKFIIEALISTGE-TGIILAAP 82 (459)
T ss_dssp ----------------CCSSCCCHHHHHHHHHHHHHHHSSSC-EEEEECCTTSCHHHHHHHHHHHHHHTTC-CCEEEEES
T ss_pred CCCCCccCCCccccCCCccccCCHHHHHHHHHHHHHHhcCCC-EEEEEeCCCCCHHHHHHHHHHHHHhcCC-ceEEEecC
Confidence 34455677999999999999987 788888888888887663 6899999999999999999998865433 12333322
Q ss_pred CCCCChHhHHHHH-------HHHHhcc-------------cCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEE
Q 020071 85 SDDRGIDVVRNKI-------KMFAQKK-------------VTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRF 144 (331)
Q Consensus 85 ~~~~~~~~i~~~i-------~~~~~~~-------------~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~ 144 (331)
. ......+.+.+ ..+.... ......+..++||||++.++......|++.+. ..+.+
T Consensus 83 T-~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~ 158 (459)
T 3upu_A 83 T-HAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTI 158 (459)
T ss_dssp S-HHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEE
T ss_pred c-HHHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEE
Confidence 2 11111222211 1111100 00112357899999999999888888887764 56677
Q ss_pred EEeeCC
Q 020071 145 ALACNV 150 (331)
Q Consensus 145 I~~~~~ 150 (331)
+++...
T Consensus 159 ~~vGD~ 164 (459)
T 3upu_A 159 IGIGDN 164 (459)
T ss_dssp EEEECT
T ss_pred EEECCH
Confidence 777644
No 92
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.14 E-value=4e-10 Score=101.89 Aligned_cols=169 Identities=13% Similarity=0.123 Sum_probs=106.6
Q ss_pred cccCHHHHHHHHHHHHcCC-----CCeEEEeCCCCccHHHHHHHH-HHHhcCCCCCCceEEeecCCCCChH-hHHHHHHH
Q 020071 27 IVGNLDAVARLGIIARDGN-----MPNLILAGPPGTGKTTSILAL-AHELLGPNYREAVMELNASDDRGID-VVRNKIKM 99 (331)
Q Consensus 27 ~ig~~~~~~~l~~~l~~~~-----~~~~ll~G~~G~GKt~la~~l-~~~l~~~~~~~~~~~~~~~~~~~~~-~i~~~i~~ 99 (331)
++||+.++..+.-.+-+|. --|+|+.|+||+ ||.+|+.+ ++.+. ...+....++...+.. .+++. ..
T Consensus 215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~p----R~~ft~g~~ss~~gLt~s~r~~-tG 288 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAP----RGVYVDLRRTELTDLTAVLKED-RG 288 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCS----SEEEEEGGGCCHHHHSEEEEES-SS
T ss_pred cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCC----CeEEecCCCCCccCceEEEEcC-CC
Confidence 8899999888877777763 126999999999 99999999 66542 1111111111000000 00000 00
Q ss_pred HHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHh---------cCCcEEEEeeCCCC-----------CCChhhh
Q 020071 100 FAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIY---------SNSTRFALACNVSS-----------KIIEPIQ 159 (331)
Q Consensus 100 ~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~---------~~~~~~I~~~~~~~-----------~l~~~l~ 159 (331)
+...+-.+..+...++++||++.++++.+.+|++.||+. +..+.+|.++|... .+.+++.
T Consensus 289 ~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alL 368 (506)
T 3f8t_A 289 WALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFL 368 (506)
T ss_dssp EEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHH
T ss_pred cccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHh
Confidence 000000011245789999999999999999999999963 56788999988754 7889999
Q ss_pred cccceeee---------------cCCCHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHh
Q 020071 160 SRCAIVRF---------------SRLSDEEILSRLMVVV-QEEKVPYVPEGLEAIIFT 201 (331)
Q Consensus 160 sr~~~i~~---------------~~~~~~~~~~~l~~~~-~~~~~~i~~~~~~~l~~~ 201 (331)
+|+..+.. +.++.+++.+++...- ......+++++.++|++.
T Consensus 369 DRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~ 426 (506)
T 3f8t_A 369 SHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHW 426 (506)
T ss_dssp TTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHH
T ss_pred hheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHH
Confidence 99844321 2345566666665432 123567888888777743
No 93
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.12 E-value=9.3e-10 Score=118.58 Aligned_cols=166 Identities=18% Similarity=0.209 Sum_probs=113.6
Q ss_pred chhhhcCCC-------CCCc-cccCHHHHH---HHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEe
Q 020071 14 PWVEKYRPT-------KVCD-IVGNLDAVA---RLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMEL 82 (331)
Q Consensus 14 ~~~~~~~p~-------~~~~-~ig~~~~~~---~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 82 (331)
||.++..+. .+.+ +|--.+..+ .+..++..++ ++||+||||||||++|+.+..... +..+..+
T Consensus 1226 ~W~~~v~~~~~~~~~~~~~~iiVpT~DT~R~~~ll~~~l~~~~--~vLL~GPpGtGKT~la~~~l~~~~----~~~~~~i 1299 (2695)
T 4akg_A 1226 SFCSEIPSVSLEAHEVMRPDIVIPTIDTIKHEKIFYDLLNSKR--GIILCGPPGSGKTMIMNNALRNSS----LYDVVGI 1299 (2695)
T ss_dssp CCCCCCCCCCCCSGGGSCSSCCCCCHHHHHHHHHHHHHHHHTC--EEEEECSTTSSHHHHHHHHHHSCS----SCEEEEE
T ss_pred echhcCCCcccCccccCccceeEeccchHHHHHHHHHHHHCCC--eEEEECCCCCCHHHHHHHHHhcCC----CCceEEE
Confidence 677765322 2333 444444443 4556666664 699999999999999977766542 4566778
Q ss_pred ecCCCCChHhHHHHHHHHHhcc-------cCC-CCCCceEEEEeCCCCCCH------HHHHHHHHHHHHhc---------
Q 020071 83 NASDDRGIDVVRNKIKMFAQKK-------VTL-PPGKHKVVVLDEADSMTA------GAQQALRRTMEIYS--------- 139 (331)
Q Consensus 83 ~~~~~~~~~~i~~~i~~~~~~~-------~~~-~~~~~~vviide~d~l~~------~~~~~Ll~~le~~~--------- 139 (331)
+.+...+...+...+....... +.. +.+.+.|++|||++.... ...+.|...+|...
T Consensus 1300 nfsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~ 1379 (2695)
T 4akg_A 1300 NFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKW 1379 (2695)
T ss_dssp ECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCE
T ss_pred EeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcE
Confidence 8777666666666666543211 111 134567999999776432 35677778887411
Q ss_pred ---CCcEEEEeeCCC-----CCCChhhhcccceeeecCCCHHHHHHHHHHHHHh
Q 020071 140 ---NSTRFALACNVS-----SKIIEPIQSRCAIVRFSRLSDEEILSRLMVVVQE 185 (331)
Q Consensus 140 ---~~~~~I~~~~~~-----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~ 185 (331)
.++.+|.++|.+ ..+.+++.+||.++.+++|+.+++..++..+.+.
T Consensus 1380 ~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1380 VTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp EEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCCTTTHHHHHHHHHHHH
T ss_pred EEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCCCCHHHHHHHHHHHHHH
Confidence 246788888887 4799999999999999999999999999887653
No 94
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.08 E-value=1.9e-10 Score=94.34 Aligned_cols=127 Identities=17% Similarity=0.124 Sum_probs=77.0
Q ss_pred chhhhcCCCCCCccccCH----HHHHHHHHHHHcCCC----CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecC
Q 020071 14 PWVEKYRPTKVCDIVGNL----DAVARLGIIARDGNM----PNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNAS 85 (331)
Q Consensus 14 ~~~~~~~p~~~~~~ig~~----~~~~~l~~~l~~~~~----~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 85 (331)
.+..+|++.+|+++++.. .++..+.+++..... .+++|+||+|+|||++++++++.+...+ ..++.+++.
T Consensus 14 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~--~~~~~~~~~ 91 (202)
T 2w58_A 14 FMPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRN--VSSLIVYVP 91 (202)
T ss_dssp SSCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTT--CCEEEEEHH
T ss_pred CCCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEEhH
Confidence 345678899999999744 355666777765521 4599999999999999999999886543 344444432
Q ss_pred CCCC-------hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH--HHHHHHH-HHHHHh-cCCcEEEEeeCCC
Q 020071 86 DDRG-------IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA--GAQQALR-RTMEIY-SNSTRFALACNVS 151 (331)
Q Consensus 86 ~~~~-------~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~--~~~~~Ll-~~le~~-~~~~~~I~~~~~~ 151 (331)
+... .......+..+. ...+++|||++.... ..+..++ .+++.. ....++|+++|..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 92 ELFRELKHSLQDQTMNEKLDYIK---------KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp HHHHHHHHC---CCCHHHHHHHH---------HSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHHHHHhccchHHHHHHHhc---------CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 1100 000011111111 234999999976543 2244344 466543 4566788888753
No 95
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.07 E-value=3.8e-10 Score=87.76 Aligned_cols=119 Identities=15% Similarity=0.170 Sum_probs=77.7
Q ss_pred CCCccc-c-CHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHH
Q 020071 23 KVCDIV-G-NLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMF 100 (331)
Q Consensus 23 ~~~~~i-g-~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 100 (331)
+|++++ | +..++..+... ....++|+||+|+|||++++.++..+... +...+.++..+....
T Consensus 15 ~~~~f~~g~n~~~~~~l~~~----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~--g~~~~~~~~~~~~~~---------- 78 (149)
T 2kjq_A 15 SFDKFLGTENAELVYVLRHK----HGQFIYVWGEEGAGKSHLLQAWVAQALEA--GKNAAYIDAASMPLT---------- 78 (149)
T ss_dssp CCCCCCSCCTHHHHHHCCCC----CCSEEEEESSSTTTTCHHHHHHHHHHHTT--TCCEEEEETTTSCCC----------
T ss_pred chhhcCcCccHHHHHHHHhc----CCCEEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEcHHHhhHH----------
Confidence 455544 3 34444444444 22348999999999999999999988543 334666666554322
Q ss_pred HhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeeCCC-CCC--Chhhhcccc
Q 020071 101 AQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSN--STRFALACNVS-SKI--IEPIQSRCA 163 (331)
Q Consensus 101 ~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~--~~~~I~~~~~~-~~l--~~~l~sr~~ 163 (331)
.+ ..+..+++|||++.+....++.|..+++.... .+++|++++.. ..+ .+.+.||+.
T Consensus 79 ---~~---~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl~ 140 (149)
T 2kjq_A 79 ---DA---AFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMA 140 (149)
T ss_dssp ---GG---GGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHGG
T ss_pred ---HH---HhCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHHh
Confidence 01 12367999999999987778888888875332 22377777743 322 289999964
No 96
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=99.05 E-value=7.5e-10 Score=89.31 Aligned_cols=115 Identities=22% Similarity=0.319 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHcCCCC---eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcccCCC
Q 020071 32 DAVARLGIIARDGNMP---NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLP 108 (331)
Q Consensus 32 ~~~~~l~~~l~~~~~~---~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~ 108 (331)
..+..++.++++ .| +++||||||+|||++|.++++.+.+ .++.+..... . +.-.+
T Consensus 43 ~f~~~l~~~~~~--iPkkn~ili~GPPGtGKTt~a~ala~~l~g-----~i~~fans~s-~----------f~l~~---- 100 (212)
T 1tue_A 43 TFLGALKSFLKG--TPKKNCLVFCGPANTGKSYFGMSFIHFIQG-----AVISFVNSTS-H----------FWLEP---- 100 (212)
T ss_dssp HHHHHHHHHHHT--CTTCSEEEEESCGGGCHHHHHHHHHHHHTC-----EECCCCCSSS-C----------GGGGG----
T ss_pred HHHHHHHHHHhc--CCcccEEEEECCCCCCHHHHHHHHHHHhCC-----CeeeEEeccc-h----------hhhcc----
Confidence 345566777764 34 5999999999999999999999842 2222111110 0 00011
Q ss_pred CCCceEEEEeCCCCCCHHH-HHHHHHHHHHhc-------------CCcEEEEeeCCC---CCCChhhhcccceeeec
Q 020071 109 PGKHKVVVLDEADSMTAGA-QQALRRTMEIYS-------------NSTRFALACNVS---SKIIEPIQSRCAIVRFS 168 (331)
Q Consensus 109 ~~~~~vviide~d~l~~~~-~~~Ll~~le~~~-------------~~~~~I~~~~~~---~~l~~~l~sr~~~i~~~ 168 (331)
..+.+++++||++.-.... ...+..+++..+ ...++|+|||.. ....+.|.||+..+.|+
T Consensus 101 l~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f~F~ 177 (212)
T 1tue_A 101 LTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEFP 177 (212)
T ss_dssp GTTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEEEECC
T ss_pred cCCCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEEEEcC
Confidence 2346799999998421111 234555555432 134789999873 44558899999988776
No 97
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.95 E-value=5.7e-10 Score=97.55 Aligned_cols=130 Identities=18% Similarity=0.173 Sum_probs=73.3
Q ss_pred chhhhcCCCCCCccccC----HHHHHHHHHHHHcCC---CCeEEEeCCCCccHHHHHHHHHHHhc-CCCCCCceEEeecC
Q 020071 14 PWVEKYRPTKVCDIVGN----LDAVARLGIIARDGN---MPNLILAGPPGTGKTTSILALAHELL-GPNYREAVMELNAS 85 (331)
Q Consensus 14 ~~~~~~~p~~~~~~ig~----~~~~~~l~~~l~~~~---~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~ 85 (331)
.+...+++.+|+++++. ..++..+..++.... ..+++||||+|+|||++|.++++.+. ..+ ..++.++.+
T Consensus 113 ~l~~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g--~~v~~~~~~ 190 (308)
T 2qgz_A 113 SLPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKG--VSTTLLHFP 190 (308)
T ss_dssp SSCGGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSC--CCEEEEEHH
T ss_pred CCCHHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcC--CcEEEEEHH
Confidence 34566778999999863 335556667777632 34599999999999999999999885 443 334444332
Q ss_pred CCCChHhHHHHHHHHHhcccCC---CCCCceEEEEeCCCCCC--HHHHHHHHH-HHHHh-cCCcEEEEeeCC
Q 020071 86 DDRGIDVVRNKIKMFAQKKVTL---PPGKHKVVVLDEADSMT--AGAQQALRR-TMEIY-SNSTRFALACNV 150 (331)
Q Consensus 86 ~~~~~~~i~~~i~~~~~~~~~~---~~~~~~vviide~d~l~--~~~~~~Ll~-~le~~-~~~~~~I~~~~~ 150 (331)
+. +.+....+....... ...+..++||||++... ...++.|+. +++.. ..+..+|++||.
T Consensus 191 ~l-----~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~ 257 (308)
T 2qgz_A 191 SF-----AIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNY 257 (308)
T ss_dssp HH-----HHHHHCCCC----CCTTHHHHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESS
T ss_pred HH-----HHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 10 111100000000000 00134699999996543 333333443 66543 345678888885
No 98
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.90 E-value=5.7e-08 Score=105.01 Aligned_cols=168 Identities=17% Similarity=0.153 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCC
Q 020071 31 LDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG 110 (331)
Q Consensus 31 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~ 110 (331)
++....+..++..+. ..++.||+|+|||++++.+++.+ +..++.+||++......+...+..+....
T Consensus 632 dr~~~tl~~Al~~~~--~~~l~GpaGtGKTe~vk~LA~~l-----g~~~v~~nc~e~ld~~~lg~~~~g~~~~G------ 698 (2695)
T 4akg_A 632 LIGFATLTDSLHQKY--GGCFFGPAGTGKTETVKAFGQNL-----GRVVVVFNCDDSFDYQVLSRLLVGITQIG------ 698 (2695)
T ss_dssp HHHHHHHHHHHHTTC--EEEEECCTTSCHHHHHHHHHHTT-----TCCCEEEETTSSCCHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHhCC--CCcccCCCCCCcHHHHHHHHHHh-----CCcEEEEECCCCCChhHhhHHHHHHHhcC------
Confidence 445566677777664 37899999999999999999999 88899999998877777777776665543
Q ss_pred CceEEEEeCCCCCCHHHHHHHHH-------HHHH-------------hcCCcEEEEeeCC----CCCCChhhhcccceee
Q 020071 111 KHKVVVLDEADSMTAGAQQALRR-------TMEI-------------YSNSTRFALACNV----SSKIIEPIQSRCAIVR 166 (331)
Q Consensus 111 ~~~vviide~d~l~~~~~~~Ll~-------~le~-------------~~~~~~~I~~~~~----~~~l~~~l~sr~~~i~ 166 (331)
.++++||++++..+...++.. .+.+ .++++.+++|.|. ...+++.+++||..+.
T Consensus 699 --aw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~ 776 (2695)
T 4akg_A 699 --AWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFREFS 776 (2695)
T ss_dssp --CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEEEEE
T ss_pred --CEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheEEEE
Confidence 499999999999988777633 3321 1245567777773 4689999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh-------c------CCCHHHHHHHHHHH
Q 020071 167 FSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFT-------A------DGDMRQALNNLQAT 216 (331)
Q Consensus 167 ~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~-------~------~g~~r~~~~~l~~~ 216 (331)
+..|+.+.+.+++.. ..|+...+..+..++.. . +..+|.+...+..+
T Consensus 777 m~~Pd~~~i~ei~l~---s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~a 836 (2695)
T 4akg_A 777 MKSPQSGTIAEMILQ---IMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNC 836 (2695)
T ss_dssp CCCCCHHHHHHHHHH---HHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHH
T ss_pred eeCCCHHHHHHHHHH---hcCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHH
Confidence 999998888887543 23544455544444321 1 24677777777543
No 99
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.78 E-value=2.3e-07 Score=88.53 Aligned_cols=179 Identities=13% Similarity=0.127 Sum_probs=105.9
Q ss_pred CCCCCCccccCHHHHHHHHHHHHcC--CCCeEEEeCCCCccHHHHHHHHHHHhc--CCCCCCceEEeecCCCCChH---h
Q 020071 20 RPTKVCDIVGNLDAVARLGIIARDG--NMPNLILAGPPGTGKTTSILALAHELL--GPNYREAVMELNASDDRGID---V 92 (331)
Q Consensus 20 ~p~~~~~~ig~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~---~ 92 (331)
-|.....++|++..+..|...+... ....+.++|++|+|||++|..+++... ...+...+..++........ .
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~ 198 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMK 198 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHH
T ss_pred CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHH
Confidence 3666778999999999999999743 333379999999999999999875320 01111122332222111101 1
Q ss_pred H------------------------HHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEee
Q 020071 93 V------------------------RNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALAC 148 (331)
Q Consensus 93 i------------------------~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~ 148 (331)
+ .+.+...... ..++-++||||++.. . .++..++++.+|+||
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-----~~~~~LLVLDdv~~~--~-------~l~~l~~~~~ilvTs 264 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLR-----KHPRSLLILDDVWDS--W-------VLKAFDSQCQILLTT 264 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHH-----TCTTCEEEEEEECCH--H-------HHHTTCSSCEEEEEE
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHcc-----CCCCeEEEEeCCCCH--H-------HHHHhcCCCeEEEEC
Confidence 1 1111111110 114679999999752 1 223336678888888
Q ss_pred CCCCCCChhhhcccceeee---cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 020071 149 NVSSKIIEPIQSRCAIVRF---SRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNLQAT 216 (331)
Q Consensus 149 ~~~~~l~~~l~sr~~~i~~---~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l~~~ 216 (331)
....-. .... ...+.+ .+++.++..+++...+.... .-.++.+..|++.++|.+-.+......+
T Consensus 265 R~~~~~-~~~~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~i~~~~~G~PLal~~~a~~l 331 (591)
T 1z6t_A 265 RDKSVT-DSVM--GPKYVVPVESSLGKEKGLEILSLFVNMKK-ADLPEQAHSIIKECKGSPLVVSLIGALL 331 (591)
T ss_dssp SCGGGG-TTCC--SCEEEEECCSSCCHHHHHHHHHHHHTSCG-GGSCTHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCcHHH-HhcC--CCceEeecCCCCCHHHHHHHHHHHhCCCc-ccccHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 654311 1111 233333 48999999999988764321 1124567899999999987665554433
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.75 E-value=8.2e-06 Score=89.28 Aligned_cols=168 Identities=14% Similarity=0.106 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCC
Q 020071 31 LDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPG 110 (331)
Q Consensus 31 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~ 110 (331)
++....|..++..+. ...+.||+|+|||.+++.+++.+ +..++.+||++......+...+....+..
T Consensus 591 drcy~tl~~Al~~~~--gg~~~GPaGtGKTet~k~La~~l-----gr~~~vfnC~~~~d~~~~g~i~~G~~~~G------ 657 (3245)
T 3vkg_A 591 DRCYLTLTQALESRM--GGNPFGPAGTGKTETVKALGSQL-----GRFVLVFCCDEGFDLQAMSRIFVGLCQCG------ 657 (3245)
T ss_dssp HHHHHHHHHHHHTTC--EEEEECSTTSSHHHHHHHHHHHT-----TCCEEEEECSSCCCHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHh-----CCeEEEEeCCCCCCHHHHHHHHhhHhhcC------
Confidence 456667777777655 25789999999999999999999 88899999998877777777666666543
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHH-------H--------------hcCCcEEEEeeCC----CCCCChhhhccccee
Q 020071 111 KHKVVVLDEADSMTAGAQQALRRTME-------I--------------YSNSTRFALACNV----SSKIIEPIQSRCAIV 165 (331)
Q Consensus 111 ~~~vviide~d~l~~~~~~~Ll~~le-------~--------------~~~~~~~I~~~~~----~~~l~~~l~sr~~~i 165 (331)
...++||++++..+....+...+. . ..+++.+++|.|. ...+++.+++||..+
T Consensus 658 --aW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v 735 (3245)
T 3vkg_A 658 --AWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSM 735 (3245)
T ss_dssp --CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEEE
T ss_pred --cEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEEE
Confidence 377999999999887666555443 1 1235667777774 468999999999999
Q ss_pred eecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh-------------cCCCHHHHHHHHHHH
Q 020071 166 RFSRLSDEEILSRLMVVVQEEKVPYVPEGLEAIIFT-------------ADGDMRQALNNLQAT 216 (331)
Q Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~-------------~~g~~r~~~~~l~~~ 216 (331)
.+..|+.+.+.+++.- ..|+.-....+..++.. .+-.+|.+...|..+
T Consensus 736 ~m~~Pd~~~i~ei~L~---s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~A 796 (3245)
T 3vkg_A 736 AMIKPDREMIAQVMLY---SQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSA 796 (3245)
T ss_dssp ECCSCCHHHHHHHHHH---TTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Confidence 9999999888887643 45665444444444321 124578888887654
No 101
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.71 E-value=2e-07 Score=101.51 Aligned_cols=143 Identities=22% Similarity=0.258 Sum_probs=101.8
Q ss_pred HHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhc-------ccCCC
Q 020071 36 RLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQK-------KVTLP 108 (331)
Q Consensus 36 ~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-------~~~~~ 108 (331)
.+..++..++ ++||+||+|+|||.++..+...+. +..++.++++.......+...+...... ++..+
T Consensus 1296 ll~~ll~~~~--pvLL~GptGtGKT~li~~~L~~l~----~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p 1369 (3245)
T 3vkg_A 1296 VLHAWLSEHR--PLILCGPPGSGKTMTLTSTLRAFP----DFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRP 1369 (3245)
T ss_dssp HHHHHHHTTC--CCEEESSTTSSHHHHHHHHGGGCT----TEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEE
T ss_pred HHHHHHHCCC--cEEEECCCCCCHHHHHHHHHHhCC----CCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCC
Confidence 4555566655 599999999999988877665542 3456788888776666666666543321 11111
Q ss_pred --CCCceEEEEeCCCCCCH------HHHHHHHHHHHHh------------cCCcEEEEeeCCC-----CCCChhhhcccc
Q 020071 109 --PGKHKVVVLDEADSMTA------GAQQALRRTMEIY------------SNSTRFALACNVS-----SKIIEPIQSRCA 163 (331)
Q Consensus 109 --~~~~~vviide~d~l~~------~~~~~Ll~~le~~------------~~~~~~I~~~~~~-----~~l~~~l~sr~~ 163 (331)
.+++.|++|||++.-.. ...+.|+.+++.. ..++.+|.++|.+ ..+.+.+.+||.
T Consensus 1370 ~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~ 1449 (3245)
T 3vkg_A 1370 TQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAP 1449 (3245)
T ss_dssp SSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCC
T ss_pred CcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhce
Confidence 25567999999976543 3677788888741 1456788888875 468899999999
Q ss_pred eeeecCCCHHHHHHHHHHHHH
Q 020071 164 IVRFSRLSDEEILSRLMVVVQ 184 (331)
Q Consensus 164 ~i~~~~~~~~~~~~~l~~~~~ 184 (331)
++.++.|+.+++..+...+..
T Consensus 1450 vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1450 ILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp EEECCCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHH
Confidence 999999999999999766544
No 102
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.65 E-value=4e-07 Score=86.02 Aligned_cols=175 Identities=16% Similarity=0.147 Sum_probs=102.3
Q ss_pred ccCHHHHHHHHHHHHcC---CCCeEEEeCCCCccHHHHHHHHHH---HhcCCCCCCceEEeecCCCC--Ch-HhHHHHHH
Q 020071 28 VGNLDAVARLGIIARDG---NMPNLILAGPPGTGKTTSILALAH---ELLGPNYREAVMELNASDDR--GI-DVVRNKIK 98 (331)
Q Consensus 28 ig~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKt~la~~l~~---~l~~~~~~~~~~~~~~~~~~--~~-~~i~~~i~ 98 (331)
+|++..+..+.+++..+ ....+.++|+.|+|||++|+.+++ .-....+. ..+.++.+... +. ....+++.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYD-SIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBS-EEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCC-cEEEEEECCCCCCCHHHHHHHHHH
Confidence 49999999999998765 333379999999999999999997 22222221 22333333321 11 12222222
Q ss_pred HHHhcc----c-C---------------CCCCC-ceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChh
Q 020071 99 MFAQKK----V-T---------------LPPGK-HKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEP 157 (331)
Q Consensus 99 ~~~~~~----~-~---------------~~~~~-~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~ 157 (331)
...... . . ...++ +-++|+||++.... . .+. .. .++++|+||.... +...
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~--~-~~~---~~--~gs~ilvTTR~~~-v~~~ 280 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEET--I-RWA---QE--LRLRCLVTTRDVE-ISNA 280 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHH--H-HHH---HH--TTCEEEEEESBGG-GGGG
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchh--h-ccc---cc--CCCEEEEEcCCHH-HHHH
Confidence 222110 0 0 00243 78999999987321 1 111 11 5678888886532 2111
Q ss_pred hhcccceeeecCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHhcCCCHHHHHHH
Q 020071 158 IQSRCAIVRFSRLSDEEILSRLMVVVQEEKV-PYVPEGLEAIIFTADGDMRQALNN 212 (331)
Q Consensus 158 l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~~~~~~~l~~~~~g~~r~~~~~ 212 (331)
.......+.+.+++.++..+++.+.+..... .-.++....|++.++|.|-.+...
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~ 336 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMF 336 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHH
Confidence 1112256899999999999999886432211 111346788999999988765433
No 103
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.60 E-value=2.6e-06 Score=88.03 Aligned_cols=182 Identities=15% Similarity=0.116 Sum_probs=109.2
Q ss_pred CCCCCCccccCHHHHHHHHHHHHcC--CCCeEEEeCCCCccHHHHHHHHHHHh--cCCCCCCceEEeecCCCCChH---h
Q 020071 20 RPTKVCDIVGNLDAVARLGIIARDG--NMPNLILAGPPGTGKTTSILALAHEL--LGPNYREAVMELNASDDRGID---V 92 (331)
Q Consensus 20 ~p~~~~~~ig~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l--~~~~~~~~~~~~~~~~~~~~~---~ 92 (331)
-|.....++|++..+..|.+.+... ....+.|+|+.|+|||++|+.++... ....+...++.++........ .
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 4666778999999999999999643 32237999999999999999887653 111122223333332211110 1
Q ss_pred HHHHHHHHHh--------------------cccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCC
Q 020071 93 VRNKIKMFAQ--------------------KKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSS 152 (331)
Q Consensus 93 i~~~i~~~~~--------------------~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~ 152 (331)
+......... ..+ ....++-++|+||++.. . .++..++++++|+||.+..
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~LlvlDd~~~~--~-------~~~~~~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLM-LRKHPRSLLILDDVWDP--W-------VLKAFDNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHT-SSSSCSCEEEEESCCCH--H-------HHTTTCSSCEEEEEESSTT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHH-hccCCCEEEEEecCCCH--H-------HHHhhcCCCEEEEEcCCHH
Confidence 1111111110 000 00123779999999853 1 2233356788888887543
Q ss_pred CCChhhhcccceeeecC-CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 020071 153 KIIEPIQSRCAIVRFSR-LSDEEILSRLMVVVQEEKVPYVPEGLEAIIFTADGDMRQALNNL 213 (331)
Q Consensus 153 ~l~~~l~sr~~~i~~~~-~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~g~~r~~~~~l 213 (331)
- ..........+...+ ++.++..+.+...+....-. .++....|++.++|.|-.+....
T Consensus 269 ~-~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~-~~~~~~~i~~~~~glPLal~~~~ 328 (1249)
T 3sfz_A 269 V-TDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKED-LPAEAHSIIKECKGSPLVVSLIG 328 (1249)
T ss_dssp T-TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTT-CCTHHHHHHHHTTTCHHHHHHHH
T ss_pred H-HHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhh-CcHHHHHHHHHhCCCHHHHHHHH
Confidence 2 222223345677775 99999999998876433322 23567889999999886554433
No 104
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.48 E-value=1.7e-06 Score=66.24 Aligned_cols=123 Identities=10% Similarity=0.067 Sum_probs=86.1
Q ss_pred HHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCC-CceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEE
Q 020071 37 LGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYR-EAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVV 115 (331)
Q Consensus 37 l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vv 115 (331)
+.+.++++-.|.++|||++-.-....+..+.+.+..++.. .+++.+++ ...+.+++..+.+.++ ++++++|
T Consensus 9 l~~~l~~~~~pvyll~G~E~~l~~~~~~~i~~~~~~~~~~e~~~~~~~~-----~~~~~~l~~~~~s~sl---F~~rrlV 80 (140)
T 1jql_B 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-----NTDWNAIFSLCQAMSL---FASRQTL 80 (140)
T ss_dssp HHHHHHHCCCSEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEECCCCST-----TCCHHHHHHHHHCCCT---TCCCEEE
T ss_pred HHHHHhccCCceEEEEcCcHHHHHHHHHHHHHHHHHCCCcceeEEEecC-----CCCHHHHHHHHhcCCC---CCCCEEE
Confidence 3444554544447999999878888888887766433211 11222222 2467888888888887 8999999
Q ss_pred EEeCCCC-CCHHHHHHHHHHHHHhcCCcEEEEeeCCC------CCCChhhhcccceeee
Q 020071 116 VLDEADS-MTAGAQQALRRTMEIYSNSTRFALACNVS------SKIIEPIQSRCAIVRF 167 (331)
Q Consensus 116 iide~d~-l~~~~~~~Ll~~le~~~~~~~~I~~~~~~------~~l~~~l~sr~~~i~~ 167 (331)
+|.+++. ++.+..+.|..+++.|++++.+|++.... .++.+++.+.+.++.+
T Consensus 81 ~v~~~~~~~~~~~~~~L~~yl~~p~~~~~lvi~~~kld~~~~~~k~~k~l~k~g~~v~~ 139 (140)
T 1jql_B 81 LLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTC 139 (140)
T ss_dssp EEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGGCEEEEC
T ss_pred EEECCCCCCChHHHHHHHHHHhcCCCCEEEEEEeCCcChhHHhhHHHHHHHhCeEEEEe
Confidence 9999755 66777889999999999999999987542 3466777666666654
No 105
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.39 E-value=1.7e-06 Score=69.11 Aligned_cols=70 Identities=13% Similarity=0.274 Sum_probs=49.8
Q ss_pred CCceEEEEeCC---CCCCHHHHHHHHHHHHHhcCCcEEEEeeC--CCCCCChhhhcc--cceeeecCCCHHHHHHHHHH
Q 020071 110 GKHKVVVLDEA---DSMTAGAQQALRRTMEIYSNSTRFALACN--VSSKIIEPIQSR--CAIVRFSRLSDEEILSRLMV 181 (331)
Q Consensus 110 ~~~~vviide~---d~l~~~~~~~Ll~~le~~~~~~~~I~~~~--~~~~l~~~l~sr--~~~i~~~~~~~~~~~~~l~~ 181 (331)
.++.++++||+ ..+.....+.+.+++++. .+.+|+++. +...+...+.+| +.++.+.+.+.+++...+.+
T Consensus 98 ~~p~llilDEigp~~~ld~~~~~~l~~~l~~~--~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~~ 174 (178)
T 1ye8_A 98 DRRKVIIIDEIGKMELFSKKFRDLVRQIMHDP--NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDILS 174 (178)
T ss_dssp CTTCEEEECCCSTTGGGCHHHHHHHHHHHTCT--TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHHH
T ss_pred cCCCEEEEeCCCCcccCCHHHHHHHHHHHhcC--CCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHHH
Confidence 35789999995 345677889999999873 344556663 345667788888 78899988887666555543
No 106
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.24 E-value=1.1e-06 Score=71.29 Aligned_cols=116 Identities=10% Similarity=0.143 Sum_probs=65.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc-----CCCCCCceEEeecCCCC--C-------------h-Hh-HHHHHHHHHhcccC
Q 020071 49 LILAGPPGTGKTTSILALAHELL-----GPNYREAVMELNASDDR--G-------------I-DV-VRNKIKMFAQKKVT 106 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~-----~~~~~~~~~~~~~~~~~--~-------------~-~~-i~~~i~~~~~~~~~ 106 (331)
.+++|+||+|||++|..+..... ..+. .++...+..+.. . . +. -.+....+...+
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~-r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~-- 84 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMANDEMFKPDENGI-RRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP-- 84 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCGGGSCCTTSC-CCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG--
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhcccccCc-eEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc--
Confidence 59999999999999988765531 1110 222222221110 0 0 00 001111221112
Q ss_pred CCCCCceEEEEeCCCCC--CH-HH--HHHHHHHHHHh-cCCcEEEEeeCCCCCCChhhhcccc-eeeecC
Q 020071 107 LPPGKHKVVVLDEADSM--TA-GA--QQALRRTMEIY-SNSTRFALACNVSSKIIEPIQSRCA-IVRFSR 169 (331)
Q Consensus 107 ~~~~~~~vviide~d~l--~~-~~--~~~Ll~~le~~-~~~~~~I~~~~~~~~l~~~l~sr~~-~i~~~~ 169 (331)
.+++.+|||||++.+ +. +. ...++..++.. .....+|++++.+..+...++.|+. .+++.+
T Consensus 85 --~~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~ 152 (199)
T 2r2a_A 85 --ENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIAS 152 (199)
T ss_dssp --GGTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEE
T ss_pred --ccCceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcC
Confidence 345789999999988 22 11 12344555533 3355788999888899999999975 356665
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.24 E-value=5.9e-07 Score=72.21 Aligned_cols=106 Identities=13% Similarity=0.093 Sum_probs=57.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC--CChHhHHHH------------HHHHHhcccCCCCCCceE
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD--RGIDVVRNK------------IKMFAQKKVTLPPGKHKV 114 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~i~~~------------i~~~~~~~~~~~~~~~~v 114 (331)
.+++||+|+|||+++..++..+...+. .+..+.+... .+...+... ...+.... .++..+
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g~--~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~----~~~~dv 79 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGKK--KVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYI----EEDTRG 79 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTC--EEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGC----CTTEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC--eEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHh----cCCCCE
Confidence 599999999999999777766543322 2222211100 000000000 00011100 235789
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC------CCCChhhhcccc
Q 020071 115 VVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVS------SKIIEPIQSRCA 163 (331)
Q Consensus 115 viide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~------~~l~~~l~sr~~ 163 (331)
|+|||++.++++..+.|..+.+. +..+|++.... ....+.+.+++.
T Consensus 80 viIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad 131 (184)
T 2orw_A 80 VFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDLTHKQNPFETTALLLSLAD 131 (184)
T ss_dssp EEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESBCTTSCBCHHHHHHHHHCS
T ss_pred EEEECcccCCHHHHHHHHHHHHC---CCCEEEEeeccccccCCccchHHHHHHhh
Confidence 99999999987777777667664 55666655422 233355666653
No 108
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.23 E-value=6e-05 Score=74.87 Aligned_cols=142 Identities=18% Similarity=0.204 Sum_probs=82.1
Q ss_pred cccCHHHHHHHHHHHHcC-CCCeEEEeCCCCccHHHHHHHHHHHh-cCCCCCCceEEeecCCCCChHhHHHH--------
Q 020071 27 IVGNLDAVARLGIIARDG-NMPNLILAGPPGTGKTTSILALAHEL-LGPNYREAVMELNASDDRGIDVVRNK-------- 96 (331)
Q Consensus 27 ~ig~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKt~la~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~i~~~-------- 96 (331)
.+|++..+..|.+.+... ..+.+.++|+.|+|||++|+.+++.. ....+...++.++.+.......+...
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 399999999999998763 33347999999999999999998531 00011222233333222222111111
Q ss_pred ------------------------HHHHHhcccCCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCC
Q 020071 97 ------------------------IKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSS 152 (331)
Q Consensus 97 ------------------------i~~~~~~~~~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~ 152 (331)
+...... ..+++-+||+||++. .+..+ .+ ++++++|+||.+..
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~----l~~KRvLLVLDDVwd--~eqLe----~f---~pGSRILVTTRd~~ 276 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKS----KPYENCLLVLLNVQN--AKAWN----AF---NLSCKILLTTRFKQ 276 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHH----STTSSCEEEEESCCC--HHHHH----HH---HSSCCEEEECSCSH
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHh----hcCCCEEEEEeCcCh--HHHHH----hh---CCCeEEEEeccChH
Confidence 1111100 134678999999988 22222 22 36788888886543
Q ss_pred CCChhhhcccceeeec------CCCHHHHHHHHHHHH
Q 020071 153 KIIEPIQSRCAIVRFS------RLSDEEILSRLMVVV 183 (331)
Q Consensus 153 ~l~~~l~sr~~~i~~~------~~~~~~~~~~l~~~~ 183 (331)
.. ..+.. ...+.++ +++.++..+++.+..
T Consensus 277 Va-~~l~g-~~vy~LeL~d~dL~LS~eEA~eLF~~~~ 311 (1221)
T 1vt4_I 277 VT-DFLSA-ATTTHISLDHHSMTLTPDEVKSLLLKYL 311 (1221)
T ss_dssp HH-HHHHH-HSSCEEEECSSSSCCCHHHHHHHHHHHH
T ss_pred HH-HhcCC-CeEEEecCccccCCcCHHHHHHHHHHHc
Confidence 11 11111 1234444 899999999998874
No 109
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.03 E-value=1.3e-05 Score=66.17 Aligned_cols=93 Identities=13% Similarity=0.163 Sum_probs=54.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCC----------CCCh-------HhHHHHHHHHHhcccCCCCCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASD----------DRGI-------DVVRNKIKMFAQKKVTLPPGK 111 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~----------~~~~-------~~i~~~i~~~~~~~~~~~~~~ 111 (331)
++++||+|+|||+++..++..+...+.. +..+.+.. ..+. ....+.......... ..+
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~k--Vli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~---~~~ 89 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVK--YLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF---NDE 89 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCC--EEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS---CTT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCE--EEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhh---CCC
Confidence 5999999999999999988887544322 22221111 0010 111122222222111 345
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeC
Q 020071 112 HKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACN 149 (331)
Q Consensus 112 ~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~ 149 (331)
..+|+|||++.++.+..+.+.. +.+. ++.+|++..
T Consensus 90 ~dvViIDEaQ~l~~~~ve~l~~-L~~~--gi~Vil~Gl 124 (223)
T 2b8t_A 90 TKVIGIDEVQFFDDRICEVANI-LAEN--GFVVIISGL 124 (223)
T ss_dssp CCEEEECSGGGSCTHHHHHHHH-HHHT--TCEEEEECC
T ss_pred CCEEEEecCccCcHHHHHHHHH-HHhC--CCeEEEEec
Confidence 7899999999998775555544 3332 677888765
No 110
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.93 E-value=5.2e-05 Score=65.58 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=38.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCC--hHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCH
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRG--IDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTA 125 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~ 125 (331)
++|+||||+|||+++..++... +....|+.+...+... .....+.+..+..... .. . +||||+++.+..
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~~---G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~---~~-~-LLVIDsI~aL~~ 196 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEAL---GGKDKYATVRFGEPLSGYNTDFNVFVDDIARAML---QH-R-VIVIDSLKNVIG 196 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHHH---HTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHH---HC-S-EEEEECCTTTC-
T ss_pred EEEEcCCCCCHHHHHHHHHHhC---CCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHh---hC-C-EEEEeccccccc
Confidence 6999999999999999999862 1133345541111000 0122222222222111 11 2 999999998843
No 111
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.90 E-value=4.8e-05 Score=61.01 Aligned_cols=107 Identities=17% Similarity=0.153 Sum_probs=69.2
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCC-CCCh-----------------------------HhHHHHH
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASD-DRGI-----------------------------DVVRNKI 97 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~-~~~~-----------------------------~~i~~~i 97 (331)
.+++|+++|.|||++|..++-...+.+...-++.+.... ..+. ......+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 489999999999999999999887766555555443321 0000 0111122
Q ss_pred HHHHhcccCCCCCCceEEEEeCC------CCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCChhhhcccc
Q 020071 98 KMFAQKKVTLPPGKHKVVVLDEA------DSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIEPIQSRCA 163 (331)
Q Consensus 98 ~~~~~~~~~~~~~~~~vviide~------d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~~l~sr~~ 163 (331)
...... ...+++.+||+||+ +.++. +.++.++.+.|.+.-+|+|++.. ++.|...+.
T Consensus 110 ~~a~~~---l~~~~yDlvILDEi~~al~~g~l~~---~ev~~~l~~Rp~~~~vIlTGr~a---p~~l~e~AD 172 (196)
T 1g5t_A 110 QHGKRM---LADPLLDMVVLDELTYMVAYDYLPL---EEVISALNARPGHQTVIITGRGC---HRDILDLAD 172 (196)
T ss_dssp HHHHHH---TTCTTCSEEEEETHHHHHHTTSSCH---HHHHHHHHTSCTTCEEEEECSSC---CHHHHHHCS
T ss_pred HHHHHH---HhcCCCCEEEEeCCCccccCCCCCH---HHHHHHHHhCcCCCEEEEECCCC---cHHHHHhCc
Confidence 222222 22567899999998 45554 46888899888899999999864 445555543
No 112
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.82 E-value=0.0001 Score=61.53 Aligned_cols=109 Identities=15% Similarity=0.173 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhc-c--c-
Q 020071 30 NLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQK-K--V- 105 (331)
Q Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~--~- 105 (331)
.+.....+..++..+ +++++||+|+|||.++..++... ...++.+.+... -..++.+.+..+... . +
T Consensus 95 ~~~Q~~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~-----~~~~liv~P~~~-L~~q~~~~~~~~~~~~v~~~~ 165 (237)
T 2fz4_A 95 RDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLA-LAEQWKERLGIFGEEYVGEFS 165 (237)
T ss_dssp CHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS-----CSCEEEEESSHH-HHHHHHHHHGGGCGGGEEEES
T ss_pred CHHHHHHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEeCCHH-HHHHHHHHHHhCCCCeEEEEe
Confidence 455555555555442 48999999999999999888876 333444433211 122222222221000 0 0
Q ss_pred ---------------------CCCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 106 ---------------------TLPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 106 ---------------------~~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
........+|||||+|.+....... +++..+...++.++++.
T Consensus 166 g~~~~~~~i~v~T~~~l~~~~~~~~~~~~llIiDEaH~l~~~~~~~---i~~~~~~~~~l~LSATp 228 (237)
T 2fz4_A 166 GRIKELKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESYVQ---IAQMSIAPFRLGLTATF 228 (237)
T ss_dssp SSCBCCCSEEEEEHHHHHHTHHHHTTTCSEEEEECSSCCCTTTHHH---HHHTCCCSEEEEEEESC
T ss_pred CCCCCcCCEEEEeHHHHHhhHHHhcccCCEEEEECCccCCChHHHH---HHHhccCCEEEEEecCC
Confidence 0001346899999999998654443 44443455566666654
No 113
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=97.72 E-value=0.00047 Score=54.95 Aligned_cols=88 Identities=15% Similarity=0.089 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cccChHhHHHHHHHHHHHHHHHhcCCCchH
Q 020071 234 QPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKN-YEMAEHLKLEFMKEAGFAHMRICDGVGSYL 312 (331)
Q Consensus 234 ~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~l 312 (331)
..+++.+..+++++.+.|.+.|+.|+.+|+..|++|..|.+.|.+++.+ +|+.+.....+.....++-.+|..- ..++
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P-E~~i 111 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP-EGLF 111 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT-TTHH
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC-HHHH
Confidence 3567889999999999999999999999999999999999999988776 6764444444444444444444321 4444
Q ss_pred HHHHHHHHHH
Q 020071 313 QLCGLLAKLS 322 (331)
Q Consensus 313 ~l~~l~~~l~ 322 (331)
.|...+.-|+
T Consensus 112 ~LaqaviyLA 121 (213)
T 3ctd_A 112 FLSQASLYLA 121 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5544444444
No 114
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.68 E-value=7.7e-05 Score=70.51 Aligned_cols=112 Identities=19% Similarity=0.213 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHH-------HHHHh
Q 020071 30 NLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKI-------KMFAQ 102 (331)
Q Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i-------~~~~~ 102 (331)
.+.....+...+.+ +.++++|+||||||+++..++..+...+ ..+..+.+ .......+.+.+ ..+..
T Consensus 191 ~~~Q~~Av~~~~~~---~~~~I~G~pGTGKTt~i~~l~~~l~~~g--~~Vl~~Ap-T~~Aa~~L~e~~~~~a~Tih~ll~ 264 (574)
T 3e1s_A 191 SEEQASVLDQLAGH---RLVVLTGGPGTGKSTTTKAVADLAESLG--LEVGLCAP-TGKAARRLGEVTGRTASTVHRLLG 264 (574)
T ss_dssp CHHHHHHHHHHTTC---SEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEEES-SHHHHHHHHHHHTSCEEEHHHHTT
T ss_pred CHHHHHHHHHHHhC---CEEEEEcCCCCCHHHHHHHHHHHHHhcC--CeEEEecC-cHHHHHHhHhhhcccHHHHHHHHc
Confidence 45555555555432 3479999999999999999998775442 23333322 111112222211 11111
Q ss_pred cc---cC---CCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 103 KK---VT---LPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 103 ~~---~~---~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
.. +. ....+..+|||||+..++......|++.+ +..+++|++...
T Consensus 265 ~~~~~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~---~~~~~lilvGD~ 315 (574)
T 3e1s_A 265 YGPQGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAV---PPGARVLLVGDT 315 (574)
T ss_dssp EETTEESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTS---CTTCEEEEEECT
T ss_pred CCcchhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhC---cCCCEEEEEecc
Confidence 00 00 01224689999999999988777666554 356788888754
No 115
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.67 E-value=0.00015 Score=57.37 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=19.3
Q ss_pred EEEeCCCCccHHHHHHHHHH
Q 020071 49 LILAGPPGTGKTTSILALAH 68 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~ 68 (331)
++|.|+||+||||+++.+++
T Consensus 5 I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHh
Confidence 79999999999999999998
No 116
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.58 E-value=0.00019 Score=58.85 Aligned_cols=126 Identities=20% Similarity=0.251 Sum_probs=72.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcc-------------cCC---CCCCc
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKK-------------VTL---PPGKH 112 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-------------~~~---~~~~~ 112 (331)
+++.|++|+|||+++..++..+...+...-++.++.... ......+......+ ... ...++
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~---~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~~p 85 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGR---AETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLKAAP 85 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTC---HHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHHHCC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCC---hhHHHHhcCccccCcceeecCCcccccccHHHHHhcCC
Confidence 899999999999999999998865544433344433111 11111111100000 000 00135
Q ss_pred eEEEEeCCCCCCHH------HHHHHHHHHHHhcCCcEEEEeeCC------------------CCCCChhhhcccceeeec
Q 020071 113 KVVVLDEADSMTAG------AQQALRRTMEIYSNSTRFALACNV------------------SSKIIEPIQSRCAIVRFS 168 (331)
Q Consensus 113 ~vviide~d~l~~~------~~~~Ll~~le~~~~~~~~I~~~~~------------------~~~l~~~l~sr~~~i~~~ 168 (331)
.++||||+...+.. ..+-+.. ..+...-++.++|- .+.++..+..++..+.+=
T Consensus 86 dlvIVDElG~~~~~~~r~~~~~qDV~~---~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v~lv 162 (228)
T 2r8r_A 86 SLVLVDELAHTNAPGSRHTKRWQDIQE---LLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDLVLI 162 (228)
T ss_dssp SEEEESCTTCBCCTTCSSSBHHHHHHH---HHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEEEEB
T ss_pred CEEEEeCCCCCCcccchhHHHHHHHHH---HHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeEEEe
Confidence 79999998765321 1222222 33455667777652 245677777888777777
Q ss_pred CCCHHHHHHHHH
Q 020071 169 RLSDEEILSRLM 180 (331)
Q Consensus 169 ~~~~~~~~~~l~ 180 (331)
-++++++.+.+.
T Consensus 163 D~~p~~l~~rl~ 174 (228)
T 2r8r_A 163 DLPPRELLERLR 174 (228)
T ss_dssp CCCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 788888777654
No 117
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.53 E-value=0.00044 Score=58.50 Aligned_cols=23 Identities=48% Similarity=0.609 Sum_probs=21.3
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.++|+|++|+||||+++.+++.+
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 47999999999999999999985
No 118
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.52 E-value=0.0023 Score=52.25 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|.|++|+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999987
No 119
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.48 E-value=0.00025 Score=67.60 Aligned_cols=99 Identities=20% Similarity=0.233 Sum_probs=55.5
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCC--CCCCceEEeecCCCCChHhHHHHHHHHHh--------------cccC-----
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGP--NYREAVMELNASDDRGIDVVRNKIKMFAQ--------------KKVT----- 106 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~i~~~i~~~~~--------------~~~~----- 106 (331)
.++++|++|||||+++..+...+... ..+..+..+. +.......+.+.+..... ...+
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~A-PTg~AA~~L~e~~~~~~~~l~l~~~~~~~~~~~~~Tih~ll 244 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA-PTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLL 244 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEB-SSHHHHHHHHHHHTHHHHHSSCCSCCCCSCSCCCBTTTSCC
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEe-CChhHHHHHHHHHHHHHhcCCCCHHHHhccchhhhhhHhhh
Confidence 48999999999999999888776421 1122232222 221122223222221100 0000
Q ss_pred -------------CCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 107 -------------LPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 107 -------------~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
....+..++||||++.++......|++. .+.++++|++...
T Consensus 245 ~~~~~~~~~~~~~~~~l~~d~lIIDEAsml~~~~~~~Ll~~---l~~~~~liLvGD~ 298 (608)
T 1w36_D 245 GAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDA---LPDHARVIFLGDR 298 (608)
T ss_dssp -----------CTTSCCSCSEEEECSGGGCBHHHHHHHHHT---CCTTCEEEEEECT
T ss_pred ccCCCchHHHhccCCCCCCCEEEEechhhCCHHHHHHHHHh---CCCCCEEEEEcch
Confidence 0011457999999998886655555544 4567888888754
No 120
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.46 E-value=0.00033 Score=56.93 Aligned_cols=96 Identities=10% Similarity=0.086 Sum_probs=51.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC--CChHhHHHHHHHHHh--------cccCCCCCCceEEEEe
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD--RGIDVVRNKIKMFAQ--------KKVTLPPGKHKVVVLD 118 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~i~~~i~~~~~--------~~~~~~~~~~~vviid 118 (331)
.+++|+.|+|||+.+...+..+...+ ..++.+.+... .+...+...+..... ..+....++..+|+||
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g--~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~dvViID 108 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAK--QHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHITEEMDVIAID 108 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEECC-----------------CCEEECSSGGGGGGGCCSSCCEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC--CEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHhcCCCEEEEE
Confidence 48999999999999988888775443 33333333211 111111111110000 0000001246899999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEeeC
Q 020071 119 EADSMTAGAQQALRRTMEIYSNSTRFALACN 149 (331)
Q Consensus 119 e~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~ 149 (331)
|++.++++..+.+..+. + .+..+|++.-
T Consensus 109 EaQF~~~~~V~~l~~l~-~--~~~~Vi~~Gl 136 (214)
T 2j9r_A 109 EVQFFDGDIVEVVQVLA-N--RGYRVIVAGL 136 (214)
T ss_dssp CGGGSCTTHHHHHHHHH-H--TTCEEEEEEC
T ss_pred CcccCCHHHHHHHHHHh-h--CCCEEEEEec
Confidence 99999877664443333 2 3677888764
No 121
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.45 E-value=0.00032 Score=74.22 Aligned_cols=37 Identities=27% Similarity=0.260 Sum_probs=27.2
Q ss_pred HHHHHH-cCC--CCeEEEeCCCCccHHHHHHHHHHHhcCC
Q 020071 37 LGIIAR-DGN--MPNLILAGPPGTGKTTSILALAHELLGP 73 (331)
Q Consensus 37 l~~~l~-~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~ 73 (331)
|..++. .|- ...++|+||||+|||++|.+++......
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~ 1454 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 1454 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 555555 331 1238999999999999999998876544
No 122
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.43 E-value=0.0027 Score=51.78 Aligned_cols=20 Identities=35% Similarity=0.376 Sum_probs=19.2
Q ss_pred EEEeCCCCccHHHHHHHHHH
Q 020071 49 LILAGPPGTGKTTSILALAH 68 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~ 68 (331)
++++||+|+|||+++..++.
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 69999999999999999998
No 123
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.42 E-value=0.00044 Score=54.24 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.9
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.++|.|++|+||||+++.+ +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 3799999999999999999 666
No 124
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.40 E-value=0.00013 Score=58.64 Aligned_cols=90 Identities=18% Similarity=0.262 Sum_probs=50.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC---------CC-------hHhHHHHHHHHHhcccCCCCCCc
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD---------RG-------IDVVRNKIKMFAQKKVTLPPGKH 112 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~---------~~-------~~~i~~~i~~~~~~~~~~~~~~~ 112 (331)
.+++||.|+|||+.+..++..+...+...-++....... .+ .....+..... .++.
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~--------~~~~ 82 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYF--------EEDT 82 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHC--------CTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHH--------hccC
Confidence 599999999999999888888754332222221000000 00 00011111110 1246
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeC
Q 020071 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACN 149 (331)
Q Consensus 113 ~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~ 149 (331)
.+|+|||++.++++..+.+..+.+ .+..+|++.-
T Consensus 83 dvViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl 116 (191)
T 1xx6_A 83 EVIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGL 116 (191)
T ss_dssp SEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEec
Confidence 799999999998766554444333 3567777754
No 125
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.38 E-value=0.0004 Score=56.58 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=27.5
Q ss_pred cCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHh
Q 020071 29 GNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 29 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 70 (331)
-.+.....+...+.. .++++++|+|+|||.++...+...
T Consensus 34 l~~~Q~~~i~~~~~~---~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 34 LRPYQMEVAQPALEG---KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCHHHHHHHHHHHTT---CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcC---CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 345555555555543 258999999999999888777654
No 126
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.36 E-value=0.00057 Score=54.19 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=17.6
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.++|.|++|+||||+++.+++.+
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 37999999999999999999987
No 127
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=97.35 E-value=0.0005 Score=65.39 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcC
Q 020071 30 NLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
|.+++..+...+.++. .++++++|+|+|||..+..++..+..
T Consensus 183 Q~~ai~~~~~~~~~~~-~~~ll~~~TGsGKT~~~~~~~~~l~~ 224 (590)
T 3h1t_A 183 QQIAINRAVQSVLQGK-KRSLITMATGTGKTVVAFQISWKLWS 224 (590)
T ss_dssp HHHHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CceEEEecCCCChHHHHHHHHHHHHh
Confidence 3444444444555554 35899999999999998888877643
No 128
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.35 E-value=0.00088 Score=53.69 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=43.7
Q ss_pred CCCceEEEEeCCCCC---CHHHHHHHHHHHHHhcCCcEEEE-ee--CCC-CCCChhhhcc--cceeeecCCCHHHHHHHH
Q 020071 109 PGKHKVVVLDEADSM---TAGAQQALRRTMEIYSNSTRFAL-AC--NVS-SKIIEPIQSR--CAIVRFSRLSDEEILSRL 179 (331)
Q Consensus 109 ~~~~~vviide~d~l---~~~~~~~Ll~~le~~~~~~~~I~-~~--~~~-~~l~~~l~sr--~~~i~~~~~~~~~~~~~l 179 (331)
..++.++++||++.+ .....++|.++++.+. ..++. ++ .+. ..+.+.+..+ +.++.+.+-+.+.+..-+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~--~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~i 180 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPG--TIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDI 180 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSS--CCEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCCC--cEEEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHHH
Confidence 356789999997666 3456778888887542 23321 22 222 2566777664 577888776666555554
Q ss_pred HH
Q 020071 180 MV 181 (331)
Q Consensus 180 ~~ 181 (331)
..
T Consensus 181 ~~ 182 (189)
T 2i3b_A 181 VT 182 (189)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 129
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.33 E-value=0.0047 Score=51.54 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=21.6
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.++|.||+|+||||+++.+++.+
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37999999999999999999988
No 130
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.32 E-value=0.01 Score=55.38 Aligned_cols=69 Identities=22% Similarity=0.196 Sum_probs=49.8
Q ss_pred ceEEEEeCCCCCC----HHHHHHHHHHHHHhc-CCcEEEEeeCCCC--CCChhhhcccce-eeecCCCHHHHHHHHH
Q 020071 112 HKVVVLDEADSMT----AGAQQALRRTMEIYS-NSTRFALACNVSS--KIIEPIQSRCAI-VRFSRLSDEEILSRLM 180 (331)
Q Consensus 112 ~~vviide~d~l~----~~~~~~Ll~~le~~~-~~~~~I~~~~~~~--~l~~~l~sr~~~-i~~~~~~~~~~~~~l~ 180 (331)
+-+|||||++.+. .+....|.++..... ..+.+|+++..+. .+...+++.+.. +.|.--+..+...++.
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 5699999998773 344555666666543 4677888887776 677888888754 6788788888877763
No 131
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.32 E-value=0.0015 Score=53.57 Aligned_cols=97 Identities=13% Similarity=0.130 Sum_probs=53.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhc-ccCC------CCCCceEEEEeCCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQK-KVTL------PPGKHKVVVLDEAD 121 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~~~~------~~~~~~vviide~d 121 (331)
.+++|+-|+|||+.+...+......+...-++........+ ..+...+...... +... ..++..+|+|||++
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg-~~i~sr~G~~~~a~~i~~~~di~~~~~~~dvViIDEaQ 100 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQ 100 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHHTTCSEEEESSGG
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch-HHHHhhcCCeeEEEecCCHHHHHHHhccCCEEEEEchh
Confidence 49999999999988877777665543332222222222222 2222111000000 0000 00346799999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 122 SMTAGAQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 122 ~l~~~~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
.+.. ...+.+.+.+ .+..+|++.-+
T Consensus 101 F~~~--v~el~~~l~~--~gi~VI~~GL~ 125 (234)
T 2orv_A 101 FFPD--IVEFCEAMAN--AGKTVIVAALD 125 (234)
T ss_dssp GCTT--HHHHHHHHHH--TTCEEEEECCS
T ss_pred hhhh--HHHHHHHHHh--CCCEEEEEecc
Confidence 9974 6777788877 56778887654
No 132
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=97.32 E-value=0.0039 Score=49.31 Aligned_cols=88 Identities=15% Similarity=0.129 Sum_probs=61.7
Q ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cccChHhHHHHHHHHHHHHHHHhcCCCch
Q 020071 233 DQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKN-YEMAEHLKLEFMKEAGFAHMRICDGVGSY 311 (331)
Q Consensus 233 ~~~~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 311 (331)
+...++.+..+++++.+.|.+.|+.|+.+|+..| +|..|.+.|..++.+ +|+.+.....+.....++-.+|..- ..+
T Consensus 11 Gd~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P-E~~ 88 (204)
T 2r9g_A 11 GDAHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP-EAR 88 (204)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT-TTH
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC-HHH
Confidence 4566788999999999999999999999999999 999999999887765 6764444444444444444444321 344
Q ss_pred HHHHHHHHHHH
Q 020071 312 LQLCGLLAKLS 322 (331)
Q Consensus 312 l~l~~l~~~l~ 322 (331)
+.|...+.-|+
T Consensus 89 i~LaqaviyLA 99 (204)
T 2r9g_A 89 IPLADVVVDLC 99 (204)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 133
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.31 E-value=0.0027 Score=51.76 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=21.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|.|++|+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 134
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.29 E-value=0.0021 Score=52.26 Aligned_cols=22 Identities=50% Similarity=0.807 Sum_probs=21.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|.||||+||+|.|+.+++.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999988
No 135
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.29 E-value=0.0053 Score=50.13 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=28.2
Q ss_pred CCCceEEEEeCCCCCC--HHHHHHHHHHHHHhcCCcEEEEeeCCC
Q 020071 109 PGKHKVVVLDEADSMT--AGAQQALRRTMEIYSNSTRFALACNVS 151 (331)
Q Consensus 109 ~~~~~vviide~d~l~--~~~~~~Ll~~le~~~~~~~~I~~~~~~ 151 (331)
....+++|+||+|.+. ......+..++...+.+..+++.|...
T Consensus 156 ~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 200 (220)
T 1t6n_A 156 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 200 (220)
T ss_dssp CTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCC
T ss_pred cccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeec
Confidence 3456899999999874 344455666666656566666655443
No 136
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=97.24 E-value=0.0018 Score=51.05 Aligned_cols=50 Identities=14% Similarity=0.075 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-ccc
Q 020071 236 HPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKN-YEM 285 (331)
Q Consensus 236 ~~~~i~~l~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~-~~~ 285 (331)
.++.+..+++++.+.|.+.|+.|+.+|+..|++|..|.+.|..++.+ +|+
T Consensus 7 HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 7 FYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 45788999999999999999999999999999999999999987766 665
No 137
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.23 E-value=0.002 Score=53.50 Aligned_cols=20 Identities=35% Similarity=0.595 Sum_probs=16.1
Q ss_pred eEEEeCCCCccHHHHHHHHH
Q 020071 48 NLILAGPPGTGKTTSILALA 67 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~ 67 (331)
.+++.||+|+|||++...+.
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHHH
Confidence 48999999999997655443
No 138
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.17 E-value=0.0022 Score=52.21 Aligned_cols=107 Identities=22% Similarity=0.367 Sum_probs=57.6
Q ss_pred CCCCeEEEeCCCCccHHHHHHHHHHHhcCCCC--CCceE-------EeecCCCCChHhHHHHHHHHHhcccCCCCCCceE
Q 020071 44 GNMPNLILAGPPGTGKTTSILALAHELLGPNY--REAVM-------ELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKV 114 (331)
Q Consensus 44 ~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~--~~~~~-------~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~v 114 (331)
...+++++.|++|+|||+++..+......... ..+.+ .+.-.+..|.+..+.....+...... ....-+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~--~~~~~i 87 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK--FVKGLI 87 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGG--GEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEeeCceEEEEECCCcHHHHHHHHHHHHhccc--cCCEEE
Confidence 34556999999999999999999986533210 01111 11111222333333444443332110 123457
Q ss_pred EEEeCC---CCCCHHHHHHHHHHHHH----hcCCcEEEEeeCCCCC
Q 020071 115 VVLDEA---DSMTAGAQQALRRTMEI----YSNSTRFALACNVSSK 153 (331)
Q Consensus 115 viide~---d~l~~~~~~~Ll~~le~----~~~~~~~I~~~~~~~~ 153 (331)
+++|-. +.+ ......+..++.. .+.++++|++.|....
T Consensus 88 ~v~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 132 (218)
T 1nrj_B 88 FMVDSTVDPKKL-TTTAEFLVDILSITESSCENGIDILIACNKSEL 132 (218)
T ss_dssp EEEETTSCTTCC-HHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred EEEECCCChHHH-HHHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence 777765 232 3444556666654 3456778888887654
No 139
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.16 E-value=0.00091 Score=60.66 Aligned_cols=76 Identities=16% Similarity=0.147 Sum_probs=44.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcccCCCCCCceEEEEeCCCCCCHHHH
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVVVLDEADSMTAGAQ 128 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~vviide~d~l~~~~~ 128 (331)
++++|++|+||||+++.+++.+ +. ..++...........+.+..... .+..+|||.... .....
T Consensus 261 Iil~G~pGSGKSTla~~L~~~~-----~~--~~i~~D~~~~~~~~~~~~~~~l~--------~g~~vIiD~~~~-~~~~r 324 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLVSA-----GY--VHVNRDTLGSWQRCVSSCQAALR--------QGKRVVIDNTNP-DVPSR 324 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTGGG-----TC--EECCGGGSCSHHHHHHHHHHHHH--------TTCCEEEESCCC-SHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc-----Cc--EEEccchHHHHHHHHHHHHHHHh--------cCCcEEEeCCCC-CHHHH
Confidence 7999999999999999999876 33 33333333222222222222221 134567876543 45555
Q ss_pred HHHHHHHHHhcC
Q 020071 129 QALRRTMEIYSN 140 (331)
Q Consensus 129 ~~Ll~~le~~~~ 140 (331)
..+...+.....
T Consensus 325 ~~~~~~~~~~~~ 336 (416)
T 3zvl_A 325 ARYIQCAKDAGV 336 (416)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHcCC
Confidence 666666665443
No 140
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.15 E-value=0.0021 Score=55.36 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|.|++|+||||+++.+++.+
T Consensus 5 I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7999999999999999999864
No 141
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.15 E-value=0.0022 Score=52.77 Aligned_cols=23 Identities=43% Similarity=0.593 Sum_probs=20.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
++|+||+|+|||++++.++..+.
T Consensus 26 ~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 69999999999999999997653
No 142
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.15 E-value=0.0019 Score=52.93 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=21.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|.||||+||+|.++.+++.+
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6889999999999999999988
No 143
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.15 E-value=0.002 Score=56.93 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
++++||+|+|||+++..++....
T Consensus 64 v~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 64 IEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 69999999999999999987664
No 144
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.14 E-value=0.0051 Score=55.75 Aligned_cols=27 Identities=37% Similarity=0.621 Sum_probs=23.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNY 75 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~ 75 (331)
+++.|++|+||||++..++..+...+.
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~~G~ 129 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQKRGY 129 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTC
T ss_pred EEEECcCCCCHHHHHHHHHHHHHHCCC
Confidence 699999999999999999998865543
No 145
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.13 E-value=0.0026 Score=54.89 Aligned_cols=85 Identities=16% Similarity=0.255 Sum_probs=49.3
Q ss_pred HHHHHHH----cCCCCe-EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC---------------------C
Q 020071 36 RLGIIAR----DGNMPN-LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR---------------------G 89 (331)
Q Consensus 36 ~l~~~l~----~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~---------------------~ 89 (331)
.|...+. .|-.+. ++++||||+|||+++..++......+.+..++.++..... .
T Consensus 13 ~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~ 92 (333)
T 3io5_A 13 MMNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQS 92 (333)
T ss_dssp HHHHHHHSSTTCCBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSB
T ss_pred HHHHHhCCCCCCCCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCC
Confidence 4556666 444444 6999999999999999888776432112334445443221 1
Q ss_pred hHhH-HHHHHHHHhcccCCCCCCceEEEEeCCCCCC
Q 020071 90 IDVV-RNKIKMFAQKKVTLPPGKHKVVVLDEADSMT 124 (331)
Q Consensus 90 ~~~i-~~~i~~~~~~~~~~~~~~~~vviide~d~l~ 124 (331)
.+++ .+.++.... .......+||||-+..+.
T Consensus 93 ~E~~~l~i~~~l~~----i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 93 LEQLRIDMVNQLDA----IERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HHHHHHHHHHHHHT----CCTTCCEEEEEECSTTCB
T ss_pred HHHHHHHHHHHHHH----hhccCceEEEEecccccc
Confidence 1222 222222111 124568999999988773
No 146
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.13 E-value=0.00036 Score=55.57 Aligned_cols=30 Identities=30% Similarity=0.377 Sum_probs=25.7
Q ss_pred CeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEE
Q 020071 47 PNLILAGPPGTGKTTSILALAHELLGPNYREAVME 81 (331)
Q Consensus 47 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 81 (331)
+.++|.|++|+||||+++.+++.+ +..++.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l-----~~~~i~ 35 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT-----KRILYD 35 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH-----CCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh-----CCCEEE
Confidence 358999999999999999999998 555554
No 147
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.11 E-value=0.00043 Score=54.67 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=21.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|+|++|+||||+++.+++.+
T Consensus 6 i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 7999999999999999999998
No 148
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.11 E-value=0.0035 Score=56.81 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=22.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPN 74 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~ 74 (331)
+++.|++|+||||++..++..+...+
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~~G 125 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKRG 125 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 69999999999999999998886543
No 149
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.10 E-value=0.0026 Score=56.42 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
++|+|+||+|||+++..++....
T Consensus 77 i~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 77 TEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHH
Confidence 69999999999999999988764
No 150
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.10 E-value=0.0013 Score=52.52 Aligned_cols=93 Identities=12% Similarity=0.099 Sum_probs=49.7
Q ss_pred EEEeCCCCccHH-HHHHHHHHHhcCCCCCCceEEeecCC-CCChHhHHHHHHHHHhc-ccCC------CCCCceEEEEeC
Q 020071 49 LILAGPPGTGKT-TSILALAHELLGPNYREAVMELNASD-DRGIDVVRNKIKMFAQK-KVTL------PPGKHKVVVLDE 119 (331)
Q Consensus 49 ~ll~G~~G~GKt-~la~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~i~~~i~~~~~~-~~~~------~~~~~~vviide 119 (331)
.++|||.|+||| .+.+++.+.... +..++.+.+.- .+..+.+...+...... +... ...+..+|+|||
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~---~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~~DvIlIDE 99 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDE 99 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHTCSEEEESS
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccCCCEEEEEc
Confidence 599999999999 777877776543 23444444331 11111111111100000 0000 011246999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEee
Q 020071 120 ADSMTAGAQQALRRTMEIYSNSTRFALAC 148 (331)
Q Consensus 120 ~d~l~~~~~~~Ll~~le~~~~~~~~I~~~ 148 (331)
++.+ ++ +..+++.+.+ .+.++|++.
T Consensus 100 aQFf-k~-~ve~~~~L~~--~gk~VI~~G 124 (195)
T 1w4r_A 100 GQFF-PD-IVEFCEAMAN--AGKTVIVAA 124 (195)
T ss_dssp GGGC-TT-HHHHHHHHHH--TTCEEEEEE
T ss_pred hhhh-HH-HHHHHHHHHH--CCCeEEEEe
Confidence 9999 55 5555566654 345666664
No 151
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.09 E-value=0.0019 Score=57.04 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCCC-e--EEEeCCCCccHHHHHHHHHHHhc
Q 020071 35 ARLGIIARDGNMP-N--LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 35 ~~l~~~l~~~~~~-~--~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
..|...+..|.++ . ++|+||+|+|||+++..++..+.
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455566523333 2 69999999999999999998764
No 152
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.04 E-value=0.0036 Score=55.17 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=26.1
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 110 GKHKVVVLDEADSMTAG-AQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 110 ~~~~vviide~d~l~~~-~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
.+..++|+||+|.+... ....+..++...+....+++.|..
T Consensus 146 ~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 187 (367)
T 1hv8_A 146 KNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSAT 187 (367)
T ss_dssp TSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSS
T ss_pred ccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeec
Confidence 45689999999986432 234555666655556666665543
No 153
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.03 E-value=0.0038 Score=51.14 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=25.9
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 110 GKHKVVVLDEADSMTAG-AQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 110 ~~~~vviide~d~l~~~-~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
.+..++|+||+|.+... ....+..++...+....+++.|..
T Consensus 154 ~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT 195 (224)
T 1qde_A 154 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSAT 195 (224)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESS
T ss_pred hhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEee
Confidence 45689999999987442 234455666655556666555443
No 154
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.03 E-value=0.0032 Score=55.51 Aligned_cols=22 Identities=27% Similarity=0.072 Sum_probs=20.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|+||+|+|||+++..++...
T Consensus 125 ~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 125 TEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp EEEECCTTCTHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6999999999999999999874
No 155
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.99 E-value=0.0027 Score=56.57 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=21.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|+||+|+||||+++.++..+
T Consensus 172 i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 172 WLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 7999999999999999999876
No 156
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.98 E-value=0.00072 Score=52.94 Aligned_cols=23 Identities=39% Similarity=0.446 Sum_probs=21.7
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.++|.|++|+||||+++.+++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999998
No 157
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.97 E-value=0.003 Score=55.81 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=41.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCC---------------------ChHhHHHHHHHHHhcccCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDR---------------------GIDVVRNKIKMFAQKKVTL 107 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~---------------------~~~~i~~~i~~~~~~~~~~ 107 (331)
++++|++|+|||+++..++......+ ..++.++..... ..+++.+.+.....
T Consensus 66 i~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~----- 138 (356)
T 1u94_A 66 VEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR----- 138 (356)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH-----
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh-----
Confidence 69999999999999999988764332 234444432211 12233333332222
Q ss_pred CCCCceEEEEeCCCCCC
Q 020071 108 PPGKHKVVVLDEADSMT 124 (331)
Q Consensus 108 ~~~~~~vviide~d~l~ 124 (331)
..+..+||||.+..+.
T Consensus 139 -~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 139 -SGAVDVIVVDSVAALT 154 (356)
T ss_dssp -HTCCSEEEEECGGGCC
T ss_pred -ccCCCEEEEcCHHHhc
Confidence 1346799999988775
No 158
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.97 E-value=0.0058 Score=49.24 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=26.2
Q ss_pred CCCceEEEEeCCCCCCH-HHHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 109 PGKHKVVVLDEADSMTA-GAQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 109 ~~~~~vviide~d~l~~-~~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
..+..++|+||+|.+.. .....+..++...+.+..+++.|..
T Consensus 144 ~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT 186 (206)
T 1vec_A 144 VDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSAT 186 (206)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESC
T ss_pred cccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEee
Confidence 34568999999997643 2344555566655555666555543
No 159
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.94 E-value=0.0007 Score=59.41 Aligned_cols=37 Identities=30% Similarity=0.390 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHh
Q 020071 34 VARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 34 ~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 70 (331)
+..+...+..|..++++|.|++|+|||++++.+++.+
T Consensus 12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3344444557777779999999999999999999988
No 160
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.92 E-value=0.00079 Score=54.39 Aligned_cols=29 Identities=34% Similarity=0.457 Sum_probs=25.1
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEE
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVME 81 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 81 (331)
.++|.|++|+||||+++.+++.+ +..++.
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l-----~~~~i~ 55 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKL-----NVPFID 55 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-----TCCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc-----CCCEEc
Confidence 58999999999999999999998 555554
No 161
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.91 E-value=0.00069 Score=53.66 Aligned_cols=24 Identities=50% Similarity=0.749 Sum_probs=22.2
Q ss_pred CeEEEeCCCCccHHHHHHHHHHHh
Q 020071 47 PNLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 47 ~~~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.++|+|++|+||||+++.+++.+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 348999999999999999999988
No 162
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.91 E-value=0.00064 Score=53.63 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=22.2
Q ss_pred CeEEEeCCCCccHHHHHHHHHHHh
Q 020071 47 PNLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 47 ~~~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.++|.|++|+||||+++.+++.+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999998
No 163
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.91 E-value=0.0048 Score=51.20 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
++++||+|+|||+++..++....
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 69999999999999988877653
No 164
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.90 E-value=0.00076 Score=52.76 Aligned_cols=32 Identities=31% Similarity=0.485 Sum_probs=26.2
Q ss_pred CCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEe
Q 020071 46 MPNLILAGPPGTGKTTSILALAHELLGPNYREAVMEL 82 (331)
Q Consensus 46 ~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 82 (331)
+.+++|.|++|+||||+++.+++.+ +.+++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l-----g~~~id~ 38 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL-----KLEVLDT 38 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH-----TCCEEEH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh-----CCCEEEC
Confidence 3458999999999999999999998 5566543
No 165
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=96.89 E-value=0.0095 Score=53.00 Aligned_cols=42 Identities=31% Similarity=0.364 Sum_probs=26.8
Q ss_pred CCCceEEEEeCCCCCCH--HHHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 109 PGKHKVVVLDEADSMTA--GAQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 109 ~~~~~vviide~d~l~~--~~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
..+..+||+||+|.+.. .....+..++...+.+..+|+.+..
T Consensus 143 ~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 186 (395)
T 3pey_A 143 LQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSAT 186 (395)
T ss_dssp CTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred cccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEec
Confidence 34578999999998754 2334455555555556666666544
No 166
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.84 E-value=0.0024 Score=66.94 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=21.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+++|||||||||++|++++.+-.
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~~ 1107 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAAQ 1107 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHhh
Confidence 79999999999999999998653
No 167
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.83 E-value=0.00083 Score=53.37 Aligned_cols=29 Identities=34% Similarity=0.546 Sum_probs=24.8
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEE
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVME 81 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 81 (331)
.++|.|++|+||||+++.+++.+ +.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l-----g~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL-----GVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH-----TCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHc-----CCCEEe
Confidence 48999999999999999999988 555554
No 168
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.79 E-value=0.021 Score=52.80 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=45.6
Q ss_pred ceEEEEeCCCCCCHH----HHHHHHHHHHHhc-CCcEEEEeeCCCC--CCChhhhccc-ceeeecCCCHHHHHHHHHH
Q 020071 112 HKVVVLDEADSMTAG----AQQALRRTMEIYS-NSTRFALACNVSS--KIIEPIQSRC-AIVRFSRLSDEEILSRLMV 181 (331)
Q Consensus 112 ~~vviide~d~l~~~----~~~~Ll~~le~~~-~~~~~I~~~~~~~--~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~ 181 (331)
+-+++|||+..+... ..+.+.++..... ..+.+|+++..+. .+...+++.+ ..+.|.--+..+...++..
T Consensus 298 ~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg~ 375 (512)
T 2ius_A 298 YIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQ 375 (512)
T ss_dssp EEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHSS
T ss_pred cEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcCC
Confidence 359999999665432 2333334444333 3677888887776 4667777765 4578888888888777643
No 169
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=96.78 E-value=0.0057 Score=52.15 Aligned_cols=39 Identities=15% Similarity=-0.010 Sum_probs=28.6
Q ss_pred cCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHh
Q 020071 29 GNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 29 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 70 (331)
-.+...+.+..++..+ +.++.+|+|+|||..+..++...
T Consensus 114 l~~~Q~~ai~~~l~~~---~~ll~~~tGsGKT~~~~~~~~~~ 152 (282)
T 1rif_A 114 PHWYQKDAVFEGLVNR---RRILNLPTSAGRSLIQALLARYY 152 (282)
T ss_dssp CCHHHHHHHHHHHHHS---EEEECCCTTSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcC---CeEEEcCCCCCcHHHHHHHHHHH
Confidence 4555666666666653 46889999999999987777654
No 170
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.77 E-value=0.018 Score=50.77 Aligned_cols=92 Identities=13% Similarity=0.203 Sum_probs=50.9
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeec------CC----------CCChHhHHHHHHHHHhcccCCCCCC
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNA------SD----------DRGIDVVRNKIKMFAQKKVTLPPGK 111 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~------~~----------~~~~~~i~~~i~~~~~~~~~~~~~~ 111 (331)
.+++.||+|+||||+.+.++..+.... +..++.+.. .. ......+.+.+..+. ..+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~-~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL-------~~~ 196 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTK-YHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSAL-------RED 196 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHC-CCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHT-------TSC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCC-CcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHh-------hhC
Confidence 489999999999999999988775320 011111100 00 000112333333222 345
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCC
Q 020071 112 HKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSS 152 (331)
Q Consensus 112 ~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~ 152 (331)
+.++++||+- ..+....+++..+. +..+++++...+
T Consensus 197 PdvillDEp~--d~e~~~~~~~~~~~---G~~vl~t~H~~~ 232 (356)
T 3jvv_A 197 PDIILVGEMR--DLETIRLALTAAET---GHLVFGTLHTTS 232 (356)
T ss_dssp CSEEEESCCC--SHHHHHHHHHHHHT---TCEEEEEESCSS
T ss_pred cCEEecCCCC--CHHHHHHHHHHHhc---CCEEEEEEccCh
Confidence 7899999996 45566666666543 233555554433
No 171
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=96.77 E-value=0.0098 Score=51.26 Aligned_cols=41 Identities=37% Similarity=0.405 Sum_probs=26.5
Q ss_pred CCceEEEEeCCCCCCH--HHHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 110 GKHKVVVLDEADSMTA--GAQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 110 ~~~~vviide~d~l~~--~~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
..-+++||||+|.+.. .....+..++...+.++.+|+.+..
T Consensus 234 ~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT 276 (300)
T 3fmo_B 234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSAT 276 (300)
T ss_dssp GGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESC
T ss_pred hhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEecc
Confidence 3568999999998754 3344455556555566666665543
No 172
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.75 E-value=0.001 Score=52.97 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.5
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcC
Q 020071 48 NLILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
.++|.|++|+||||+++.+++.+..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3799999999999999999998843
No 173
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=96.74 E-value=0.011 Score=53.10 Aligned_cols=41 Identities=37% Similarity=0.405 Sum_probs=25.3
Q ss_pred CCceEEEEeCCCCCCH--HHHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 110 GKHKVVVLDEADSMTA--GAQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 110 ~~~~vviide~d~l~~--~~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
.+..+|||||+|.+.. .....+..++...+.+..+|+.+..
T Consensus 167 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 209 (412)
T 3fht_A 167 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSAT 209 (412)
T ss_dssp GGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESC
T ss_pred hhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEee
Confidence 4568999999997632 2333444555555556666665543
No 174
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.73 E-value=0.0011 Score=52.75 Aligned_cols=23 Identities=43% Similarity=0.720 Sum_probs=21.4
Q ss_pred CeEEEeCCCCccHHHHHHHHHHH
Q 020071 47 PNLILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 47 ~~~ll~G~~G~GKt~la~~l~~~ 69 (331)
..++|+|++|+||||+++.+++.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 34899999999999999999998
No 175
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.71 E-value=0.0013 Score=51.60 Aligned_cols=23 Identities=48% Similarity=0.712 Sum_probs=21.6
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+.|.|++|+||||+++.++..+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999987
No 176
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.70 E-value=0.0014 Score=55.24 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=21.5
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+++.||+|+||||+|+.+++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 36999999999999999999988
No 177
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.69 E-value=0.011 Score=49.04 Aligned_cols=41 Identities=24% Similarity=0.273 Sum_probs=25.7
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 110 GKHKVVVLDEADSMTAG-AQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 110 ~~~~vviide~d~l~~~-~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
...+++|+||+|.+... ....+..++...+....+|+.|..
T Consensus 172 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT 213 (237)
T 3bor_A 172 KWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSAT 213 (237)
T ss_dssp TTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSS
T ss_pred ccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEe
Confidence 45689999999976432 234455566655556666665543
No 178
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.69 E-value=0.0022 Score=52.08 Aligned_cols=91 Identities=12% Similarity=0.113 Sum_probs=48.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC--CChHhHHHHH------------HHHHhcccCCCCCCceE
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD--RGIDVVRNKI------------KMFAQKKVTLPPGKHKV 114 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~i~~~i------------~~~~~~~~~~~~~~~~v 114 (331)
.+++||-|+|||+.+...+..+...+ ..+..+.+... .+...+...+ ...... -..+..+
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~~g--~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~----i~~~~dv 104 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIYAK--QKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTH----DLTNVDV 104 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTT--CCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGS----CCTTCSE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC--CceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHH----HhcCCCE
Confidence 49999999999995544445443332 23333332211 0100000000 000000 0245679
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEee
Q 020071 115 VVLDEADSMTAGAQQALRRTMEIYSNSTRFALAC 148 (331)
Q Consensus 115 viide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~ 148 (331)
|+|||+++++++..+.+..+.+ .+.++|+..
T Consensus 105 V~IDEaQFf~~~~v~~l~~la~---~gi~Vi~~G 135 (219)
T 3e2i_A 105 IGIDEVQFFDDEIVSIVEKLSA---DGHRVIVAG 135 (219)
T ss_dssp EEECCGGGSCTHHHHHHHHHHH---TTCEEEEEE
T ss_pred EEEechhcCCHHHHHHHHHHHH---CCCEEEEee
Confidence 9999999999887777777663 356666653
No 179
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.67 E-value=0.0031 Score=54.10 Aligned_cols=22 Identities=41% Similarity=0.670 Sum_probs=20.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|.||+|+||||+++.+++.+
T Consensus 36 ivl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6999999999999999999987
No 180
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.66 E-value=0.0056 Score=52.93 Aligned_cols=25 Identities=40% Similarity=0.530 Sum_probs=22.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGP 73 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~ 73 (331)
+++.|++|+||||++..++..+...
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEcCCCChHHHHHHHHHHHHHhc
Confidence 6999999999999999999887543
No 181
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.65 E-value=0.0013 Score=51.64 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=21.8
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.++|.|++|+||||+++.+++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 182
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.63 E-value=0.0016 Score=52.62 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=21.7
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.++|.|++|+||||+++.+++.+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 183
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=96.62 E-value=0.0053 Score=50.62 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=23.8
Q ss_pred CCceEEEEeCCCCCCHH--HHHHHHHHHHHhcCCcEEEEeeC
Q 020071 110 GKHKVVVLDEADSMTAG--AQQALRRTMEIYSNSTRFALACN 149 (331)
Q Consensus 110 ~~~~vviide~d~l~~~--~~~~Ll~~le~~~~~~~~I~~~~ 149 (331)
.+.+++||||+|.+... -...+..++...+....+++.+.
T Consensus 165 ~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSA 206 (230)
T 2oxc_A 165 GSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSA 206 (230)
T ss_dssp GGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEES
T ss_pred ccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEe
Confidence 34579999999987322 23445555555555565555443
No 184
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.62 E-value=0.013 Score=47.17 Aligned_cols=42 Identities=24% Similarity=0.239 Sum_probs=26.0
Q ss_pred CCCceEEEEeCCCCCCHH-HHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 109 PGKHKVVVLDEADSMTAG-AQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 109 ~~~~~vviide~d~l~~~-~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
..+.+++|+||+|.+... ....+..++...+.+..+++.|..
T Consensus 142 ~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 184 (207)
T 2gxq_A 142 LSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSAT 184 (207)
T ss_dssp CTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSS
T ss_pred hhhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEe
Confidence 345789999999977432 234455555555556666655543
No 185
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.61 E-value=0.012 Score=48.23 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=27.1
Q ss_pred CCCceEEEEeCCCCCCHHH-HHHHHHHHHHhcCCcEEEEeeCC
Q 020071 109 PGKHKVVVLDEADSMTAGA-QQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 109 ~~~~~vviide~d~l~~~~-~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
..+.+++||||+|.+.... ...+..++...+.+..+++.+..
T Consensus 165 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 207 (228)
T 3iuy_A 165 LRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSAT 207 (228)
T ss_dssp CTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESC
T ss_pred cccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEee
Confidence 3457899999999875432 34555666666666666665543
No 186
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.61 E-value=0.002 Score=52.76 Aligned_cols=23 Identities=39% Similarity=0.768 Sum_probs=21.8
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.++|.|++|+||||+++.+++.+
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999988
No 187
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.60 E-value=0.0015 Score=52.71 Aligned_cols=22 Identities=50% Similarity=0.915 Sum_probs=21.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|.|++|+||||+++.+++.+
T Consensus 23 I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 23 VLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999999988
No 188
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.58 E-value=0.0015 Score=52.10 Aligned_cols=22 Identities=55% Similarity=0.702 Sum_probs=21.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|.|++|+||||+++.+++.+
T Consensus 8 I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7999999999999999999988
No 189
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.57 E-value=0.0014 Score=52.33 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=22.6
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcC
Q 020071 48 NLILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
.++|.|++|+||||+++.+++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3799999999999999999999853
No 190
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.57 E-value=0.011 Score=52.02 Aligned_cols=22 Identities=32% Similarity=0.277 Sum_probs=20.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.|+||+|+|||++++.++...
T Consensus 134 ~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6999999999999999999876
No 191
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.56 E-value=0.0014 Score=55.07 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=21.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|.|++|+||||+++.+++.+
T Consensus 35 i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 7999999999999999999987
No 192
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.56 E-value=0.0017 Score=50.63 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=21.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|.|++|+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 193
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.55 E-value=0.0037 Score=53.85 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=21.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.||+|+|||+++..+++.+
T Consensus 6 i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEECCCcCCHHHHHHHHHHhC
Confidence 6999999999999999999987
No 194
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.54 E-value=0.0017 Score=51.98 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=21.8
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.++|.|++|+||||+++.+++.+
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 195
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.52 E-value=0.0017 Score=51.87 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=21.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|.|++|+||||+++.+++.+
T Consensus 6 I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999999987
No 196
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.52 E-value=0.013 Score=49.47 Aligned_cols=23 Identities=30% Similarity=0.712 Sum_probs=21.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
++|.||+|+||||+.+.++..+.
T Consensus 28 v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 28 ILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp EEEECSTTCSHHHHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHhCC
Confidence 79999999999999999998764
No 197
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=96.51 E-value=0.012 Score=47.98 Aligned_cols=41 Identities=15% Similarity=0.143 Sum_probs=25.4
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 110 GKHKVVVLDEADSMTAG-AQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 110 ~~~~vviide~d~l~~~-~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
...+++||||+|.+... ....+..++...+.+..+++.|..
T Consensus 149 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT 190 (219)
T 1q0u_A 149 HTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSAT 190 (219)
T ss_dssp GGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESC
T ss_pred CcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecC
Confidence 34679999999987532 234455666655556655555433
No 198
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.51 E-value=0.002 Score=51.17 Aligned_cols=22 Identities=55% Similarity=0.889 Sum_probs=21.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|.|++|+||||+++.+++.+
T Consensus 7 I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999999987
No 199
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.48 E-value=0.015 Score=53.49 Aligned_cols=42 Identities=36% Similarity=0.374 Sum_probs=26.8
Q ss_pred CCceEEEEeCCCCCCH--HHHHHHHHHHHHhcCCcEEEEeeCCC
Q 020071 110 GKHKVVVLDEADSMTA--GAQQALRRTMEIYSNSTRFALACNVS 151 (331)
Q Consensus 110 ~~~~vviide~d~l~~--~~~~~Ll~~le~~~~~~~~I~~~~~~ 151 (331)
...++|||||+|.+.. .....+..++...+.++.+|+.+..+
T Consensus 234 ~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 277 (479)
T 3fmp_B 234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATF 277 (479)
T ss_dssp GGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCC
T ss_pred ccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCC
Confidence 4568999999997632 33444555555555667776665443
No 200
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.46 E-value=0.0064 Score=64.66 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPN 74 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~ 74 (331)
++++||+|+|||+++..++.+....+
T Consensus 1084 vll~G~~GtGKT~la~~~~~ea~k~G 1109 (2050)
T 3cmu_A 1084 VEIYGPESSGKTTLTLQVIAAAQREG 1109 (2050)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 89999999999999999998765443
No 201
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.45 E-value=0.0022 Score=51.12 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=21.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|.|++|+||||+++.+++.+
T Consensus 9 I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999999988
No 202
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.45 E-value=0.014 Score=50.72 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=31.7
Q ss_pred HHHHHHHcCCCCe--EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecC
Q 020071 36 RLGIIARDGNMPN--LILAGPPGTGKTTSILALAHELLGPNYREAVMELNAS 85 (331)
Q Consensus 36 ~l~~~l~~~~~~~--~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 85 (331)
.|...+ .|-.+. +++.|+||+|||+++..++.....++ .+++.++..
T Consensus 57 ~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE 105 (315)
T 3bh0_A 57 ELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE 105 (315)
T ss_dssp HHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS
T ss_pred HHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC
Confidence 344444 443333 69999999999999999998765443 345555543
No 203
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=96.43 E-value=0.022 Score=50.66 Aligned_cols=42 Identities=14% Similarity=0.247 Sum_probs=27.6
Q ss_pred CCCceEEEEeCCCCCCH--HHHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 109 PGKHKVVVLDEADSMTA--GAQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 109 ~~~~~vviide~d~l~~--~~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
.....+||+||+|.+.. .....+..++...+....+++.|..
T Consensus 150 ~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 193 (391)
T 1xti_A 150 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 193 (391)
T ss_dssp CTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESS
T ss_pred ccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEee
Confidence 34578999999998854 4445566666665556666655443
No 204
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.39 E-value=0.0018 Score=51.90 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=21.7
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.++|.|++|+||||+++.+++.+
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37999999999999999999988
No 205
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.39 E-value=0.0024 Score=51.48 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=21.4
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.++|.|++|+||||+++.+++.+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 37999999999999999999987
No 206
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.39 E-value=0.0035 Score=51.91 Aligned_cols=23 Identities=43% Similarity=0.751 Sum_probs=21.9
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.++|.|++|+||||+++.+++.+
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999998
No 207
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.39 E-value=0.017 Score=56.46 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=20.0
Q ss_pred HHHHcCCCCeEEEeCCCCccHHHHHHHHHH
Q 020071 39 IIARDGNMPNLILAGPPGTGKTTSILALAH 68 (331)
Q Consensus 39 ~~l~~~~~~~~ll~G~~G~GKt~la~~l~~ 68 (331)
..+.++. .+++.||+|+|||+++..+..
T Consensus 104 ~~l~~~~--~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 104 KLYQNNQ--IMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp HHHHHCS--EEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhCCC--eEEEECCCCCCHHHHHHHHHH
Confidence 3344443 489999999999996666543
No 208
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.38 E-value=0.002 Score=52.81 Aligned_cols=23 Identities=48% Similarity=0.716 Sum_probs=21.8
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.++|.|++|+||||+++.+++.+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999998
No 209
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.38 E-value=0.0035 Score=50.53 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=21.5
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+.|.||+|+||||+++.++..+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 47999999999999999999987
No 210
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.37 E-value=0.041 Score=50.82 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=22.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGP 73 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~ 73 (331)
++|.|++|+||||++..++..+...
T Consensus 104 I~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 104 IMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC
Confidence 7999999999999999999877543
No 211
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=96.36 E-value=0.03 Score=46.43 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=24.6
Q ss_pred CCCceEEEEeCCCCCCH----HHHHHHHHHHHHh-cCCcEEEEee
Q 020071 109 PGKHKVVVLDEADSMTA----GAQQALRRTMEIY-SNSTRFALAC 148 (331)
Q Consensus 109 ~~~~~vviide~d~l~~----~~~~~Ll~~le~~-~~~~~~I~~~ 148 (331)
..+.+++||||+|.+.. .....+..++... +.+.++++.+
T Consensus 173 ~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~S 217 (245)
T 3dkp_A 173 LASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFS 217 (245)
T ss_dssp CTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEE
T ss_pred cccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEe
Confidence 34578999999998864 2445556665542 2345555444
No 212
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.35 E-value=0.0071 Score=50.05 Aligned_cols=38 Identities=24% Similarity=0.114 Sum_probs=26.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCC----CCCceEEeecCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPN----YREAVMELNASD 86 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~----~~~~~~~~~~~~ 86 (331)
+.|+||+|+|||++++.++....... .....+.++...
T Consensus 27 ~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 27 TEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 69999999999999999998642211 123455555544
No 213
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.34 E-value=0.017 Score=49.05 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=32.6
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHHHhc--CCcEEEEeeCCCCCC
Q 020071 110 GKHKVVVLDEA-DSMTAGAQQALRRTMEIYS--NSTRFALACNVSSKI 154 (331)
Q Consensus 110 ~~~~vviide~-d~l~~~~~~~Ll~~le~~~--~~~~~I~~~~~~~~l 154 (331)
.+++++++||. ..|.......+.+++.+.. .+..+|+++.+...+
T Consensus 160 ~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 160 MEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIV 207 (275)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSG
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH
Confidence 46899999996 5678888888888877643 255677777765543
No 214
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.34 E-value=0.0019 Score=53.21 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=21.6
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.++|.|++|+||||+++.+++.+
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47999999999999999999987
No 215
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.33 E-value=0.0072 Score=54.67 Aligned_cols=90 Identities=19% Similarity=0.224 Sum_probs=50.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHH----------------HHhcccCCCCCCc
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKM----------------FAQKKVTLPPGKH 112 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~----------------~~~~~~~~~~~~~ 112 (331)
.++.|++|+|||+++..++.. .....+.+... ..+.+++.+.. +..........+.
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~~-------~~~lVlTpT~~-aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~~~ 235 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVNF-------EEDLILVPGRQ-AAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQF 235 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCCT-------TTCEEEESCHH-HHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCCCC
T ss_pred EEEEcCCCCCHHHHHHHHhcc-------CCeEEEeCCHH-HHHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCCcC
Confidence 499999999999999877642 11222332221 22333333321 1111100001136
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 113 ~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
.++||||+..++......++..+ +. ..+|+....
T Consensus 236 d~liiDE~sm~~~~~l~~l~~~~---~~-~~vilvGD~ 269 (446)
T 3vkw_A 236 KRLFIDEGLMLHTGCVNFLVEMS---LC-DIAYVYGDT 269 (446)
T ss_dssp SEEEEETGGGSCHHHHHHHHHHT---TC-SEEEEEECT
T ss_pred CEEEEeCcccCCHHHHHHHHHhC---CC-CEEEEecCc
Confidence 89999999999887777666553 23 677777643
No 216
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=96.31 E-value=0.014 Score=54.36 Aligned_cols=43 Identities=30% Similarity=0.337 Sum_probs=27.1
Q ss_pred CCCceEEEEeCCCCCCH--HHHHHHHHHHHHhcCCcEEEEeeCCC
Q 020071 109 PGKHKVVVLDEADSMTA--GAQQALRRTMEIYSNSTRFALACNVS 151 (331)
Q Consensus 109 ~~~~~vviide~d~l~~--~~~~~Ll~~le~~~~~~~~I~~~~~~ 151 (331)
.....+|||||+|.+.. .....+..++...+.+..+|+.|...
T Consensus 257 ~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~ 301 (508)
T 3fho_A 257 ARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATF 301 (508)
T ss_dssp CTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred ccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCC
Confidence 45578999999998754 22344555555555567766655443
No 217
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=96.31 E-value=0.015 Score=48.64 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=24.8
Q ss_pred CCCceEEEEeCCCCCCHH-HHHHHHHHHHHhcCCcEEEEeeC
Q 020071 109 PGKHKVVVLDEADSMTAG-AQQALRRTMEIYSNSTRFALACN 149 (331)
Q Consensus 109 ~~~~~vviide~d~l~~~-~~~~Ll~~le~~~~~~~~I~~~~ 149 (331)
....+++|+||+|.+... -...+.+++...+....+++.+.
T Consensus 184 l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SA 225 (249)
T 3ber_A 184 LRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSA 225 (249)
T ss_dssp CTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEES
T ss_pred ccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEec
Confidence 345679999999976432 23445556655555555555443
No 218
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.30 E-value=0.038 Score=48.24 Aligned_cols=37 Identities=30% Similarity=0.377 Sum_probs=30.0
Q ss_pred HHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhc
Q 020071 33 AVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 33 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+...+.-.+..|. .+++.||+|+||||+++.++..+.
T Consensus 160 ~l~~l~~~i~~g~--~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 160 AISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HHHHHHHHHHHTC--CEEEEESTTSCHHHHHHHGGGGSC
T ss_pred HHhhhhhhccCCC--EEEEECCCCCCHHHHHHHHhCCCc
Confidence 4556666676766 489999999999999999998764
No 219
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.28 E-value=0.0041 Score=50.11 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=21.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+.|.||+|+||||+++.++..+.
T Consensus 28 i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 28 IWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 79999999999999999999884
No 220
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=96.28 E-value=0.05 Score=48.51 Aligned_cols=40 Identities=15% Similarity=0.271 Sum_probs=24.0
Q ss_pred CCCceEEEEeCCCCCCHHH-HHHHHHHHHHhcCCcEEEEee
Q 020071 109 PGKHKVVVLDEADSMTAGA-QQALRRTMEIYSNSTRFALAC 148 (331)
Q Consensus 109 ~~~~~vviide~d~l~~~~-~~~Ll~~le~~~~~~~~I~~~ 148 (331)
..+..++|+||+|.+.... ...+..++...+....+++.+
T Consensus 161 ~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lS 201 (400)
T 1s2m_A 161 LSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFS 201 (400)
T ss_dssp CTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEE
T ss_pred cccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEE
Confidence 3456899999999775443 334444554444455555444
No 221
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.28 E-value=0.0036 Score=49.18 Aligned_cols=22 Identities=36% Similarity=0.661 Sum_probs=20.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|.|++|+||||+++.++..+
T Consensus 11 i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHhh
Confidence 7999999999999999999887
No 222
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=96.27 E-value=0.012 Score=49.59 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=26.2
Q ss_pred CCCceEEEEeCCCCCCHH-HHHHHHHHHHHhcCCcEEEEeeC
Q 020071 109 PGKHKVVVLDEADSMTAG-AQQALRRTMEIYSNSTRFALACN 149 (331)
Q Consensus 109 ~~~~~vviide~d~l~~~-~~~~Ll~~le~~~~~~~~I~~~~ 149 (331)
..+.+++||||+|.+... -...+..++...+....+++.+.
T Consensus 199 ~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SA 240 (262)
T 3ly5_A 199 YKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSA 240 (262)
T ss_dssp CTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECS
T ss_pred cccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEe
Confidence 355789999999986543 23445556666566666655543
No 223
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.26 E-value=0.0022 Score=52.68 Aligned_cols=23 Identities=22% Similarity=0.510 Sum_probs=21.8
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.++|.|++|+||||+++.+++.+
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999998
No 224
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.26 E-value=0.0024 Score=50.93 Aligned_cols=22 Identities=50% Similarity=0.703 Sum_probs=20.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.|.||+|+||||+++.++...
T Consensus 12 i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEECTTSCHHHHHHHHHTCS
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7999999999999999998863
No 225
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.22 E-value=0.003 Score=50.01 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.|.||+|+||||+++.+...+
T Consensus 8 i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 7999999999999999999876
No 226
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=96.22 E-value=0.019 Score=51.48 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=27.0
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 110 GKHKVVVLDEADSMTAG-AQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 110 ~~~~vviide~d~l~~~-~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
...++|||||+|.+... ....+..++...+.+..+|+.+..
T Consensus 182 ~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 223 (414)
T 3eiq_A 182 KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSAT 223 (414)
T ss_dssp TTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSC
T ss_pred ccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEe
Confidence 44689999999986433 234556666666666777666544
No 227
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.21 E-value=0.013 Score=46.41 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||++++.+....
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 8999999999999998777654
No 228
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.19 E-value=0.024 Score=46.68 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=25.9
Q ss_pred CCCceEEEEeCCCCCCHH-HHHHHHHHHHHhcCCcEEEEeeC
Q 020071 109 PGKHKVVVLDEADSMTAG-AQQALRRTMEIYSNSTRFALACN 149 (331)
Q Consensus 109 ~~~~~vviide~d~l~~~-~~~~Ll~~le~~~~~~~~I~~~~ 149 (331)
.....++||||+|.+... ....+..++...+....+++.|.
T Consensus 169 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 210 (236)
T 2pl3_A 169 ATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSA 210 (236)
T ss_dssp CTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEES
T ss_pred cccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEe
Confidence 345679999999977432 23455666666565665555443
No 229
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.19 E-value=0.003 Score=51.14 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=22.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcC
Q 020071 49 LILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
++|.|++|+||||+++.+++.+..
T Consensus 7 I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhh
Confidence 799999999999999999999854
No 230
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.18 E-value=0.0037 Score=54.29 Aligned_cols=31 Identities=32% Similarity=0.562 Sum_probs=25.6
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEee
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVMELN 83 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 83 (331)
.++++||+|+|||+++..+++.+ +..++..+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l-----~~~iis~D 37 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL-----PCELISVD 37 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS-----CEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-----CCcEEecc
Confidence 37999999999999999999988 44455544
No 231
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=96.18 E-value=0.031 Score=49.65 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=26.7
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHHHhcCCcEEEEeeCCC
Q 020071 110 GKHKVVVLDEADSMTAG-AQQALRRTMEIYSNSTRFALACNVS 151 (331)
Q Consensus 110 ~~~~vviide~d~l~~~-~~~~Ll~~le~~~~~~~~I~~~~~~ 151 (331)
.+..++|+||+|.+... ....+..++...+....+++.+..+
T Consensus 161 ~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 203 (394)
T 1fuu_A 161 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATM 203 (394)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSC
T ss_pred hhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEec
Confidence 45689999999987432 2344555566555666666665443
No 232
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.16 E-value=0.0037 Score=50.98 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=21.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|.|++|+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 233
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.16 E-value=0.003 Score=51.11 Aligned_cols=22 Identities=41% Similarity=0.715 Sum_probs=21.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|.||+|+||||+++.+++.+
T Consensus 15 i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp EEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7999999999999999999987
No 234
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.15 E-value=0.0043 Score=50.99 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=21.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|.|++|+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999988
No 235
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.15 E-value=0.004 Score=50.05 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=21.5
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+.|.|++|+||||+++.+++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 37899999999999999999988
No 236
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.15 E-value=0.02 Score=46.71 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+++.|.+|+|||+++..+...-.
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~~f 38 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYDSF 38 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCcCHHHHHHHHHhCCC
Confidence 79999999999999999987543
No 237
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.15 E-value=0.0028 Score=50.40 Aligned_cols=24 Identities=46% Similarity=0.559 Sum_probs=22.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcC
Q 020071 49 LILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
++|.|++|+||||+++.++..+..
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 799999999999999999998853
No 238
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=96.14 E-value=0.022 Score=51.96 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHh
Q 020071 30 NLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+.....+...+.. ++++.+|+|+|||..+..++...
T Consensus 11 ~~~Q~~~i~~~~~~----~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 11 RIYQEVIYAKCKET----NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp CHHHHHHHHHGGGS----CEEEECCTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhC----CEEEEcCCCCCHHHHHHHHHHHH
Confidence 34455555544443 68999999999999888886655
No 239
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=96.12 E-value=0.034 Score=49.86 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=26.1
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 110 GKHKVVVLDEADSMTAG-AQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 110 ~~~~vviide~d~l~~~-~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
....++||||+|.+... ....+..++...+....+++.+..
T Consensus 178 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 219 (410)
T 2j0s_A 178 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISAT 219 (410)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESC
T ss_pred hheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcC
Confidence 45689999999976432 245556666655556666655433
No 240
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.12 E-value=0.015 Score=61.12 Aligned_cols=68 Identities=21% Similarity=0.281 Sum_probs=42.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCC---------------------CChHhHHHHHHHHHhcccCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDD---------------------RGIDVVRNKIKMFAQKKVTL 107 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~---------------------~~~~~i~~~i~~~~~~~~~~ 107 (331)
++|+||||+|||+++..++......+ ..+..++.... ...+.+.+.+.....
T Consensus 735 VlI~G~PG~GKTtLal~lA~~aa~~g--~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~----- 807 (1706)
T 3cmw_A 735 VEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR----- 807 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH-----
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHcC--CCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH-----
Confidence 79999999999999999988764322 23444433221 122333333332222
Q ss_pred CCCCceEEEEeCCCCCC
Q 020071 108 PPGKHKVVVLDEADSMT 124 (331)
Q Consensus 108 ~~~~~~vviide~d~l~ 124 (331)
..+..+||||.++.+.
T Consensus 808 -~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 808 -SGAVDVIVVDSVAALT 823 (1706)
T ss_dssp -HTCCSEEEESCSTTCC
T ss_pred -ccCCCEEEEechhhhc
Confidence 1346799999999886
No 241
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.10 E-value=0.031 Score=43.37 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||+++..+...-
T Consensus 10 i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998654
No 242
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.07 E-value=0.0056 Score=51.28 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHc---CCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEE
Q 020071 32 DAVARLGIIARD---GNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVME 81 (331)
Q Consensus 32 ~~~~~l~~~l~~---~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 81 (331)
.+++.+.-.+.. |. .+.|.|++|+||||+++.+++.+ +..++.
T Consensus 33 ~~l~~~~~~i~~~l~g~--~i~l~G~~GsGKSTl~~~La~~l-----g~~~~d 78 (250)
T 3nwj_A 33 QILKKKAEEVKPYLNGR--SMYLVGMMGSGKTTVGKIMARSL-----GYTFFD 78 (250)
T ss_dssp HHHHHHHHTTHHHHTTC--CEEEECSTTSCHHHHHHHHHHHH-----TCEEEE
T ss_pred hhhhhhhhhhhhhcCCC--EEEEECCCCCCHHHHHHHHHHhc-----CCcEEe
Confidence 344444333444 43 48999999999999999999988 555554
No 243
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.06 E-value=0.015 Score=51.08 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=30.8
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHHHhc--CCcEEEEeeCCC
Q 020071 110 GKHKVVVLDEA-DSMTAGAQQALRRTMEIYS--NSTRFALACNVS 151 (331)
Q Consensus 110 ~~~~vviide~-d~l~~~~~~~Ll~~le~~~--~~~~~I~~~~~~ 151 (331)
.+++++++||. ..|.......+.+.+.+.. .+..+|++|.+.
T Consensus 144 ~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~ 188 (348)
T 3d31_A 144 TNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ 188 (348)
T ss_dssp SCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46899999995 6778888888888777543 245677777654
No 244
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.05 E-value=0.0051 Score=50.46 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=21.5
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+.|.||+|+||||+++.+++.+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999987
No 245
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=96.02 E-value=0.032 Score=51.22 Aligned_cols=39 Identities=26% Similarity=0.145 Sum_probs=29.1
Q ss_pred cCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHh
Q 020071 29 GNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 29 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 70 (331)
-.+...+.+..++..+ ++++.||.|+|||..+..++...
T Consensus 94 l~~~Q~~ai~~i~~~~---~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 94 LRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp BCHHHHHHHHHHTTTT---EEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 3555666666555443 48999999999999988887776
No 246
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.02 E-value=0.011 Score=48.43 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcC
Q 020071 30 NLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
+++....++..+.....+.+++.|.+|+|||+++..++.....
T Consensus 22 ~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 22 NKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 3445566777776666666899999999999999999988643
No 247
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.02 E-value=0.093 Score=53.72 Aligned_cols=40 Identities=18% Similarity=0.123 Sum_probs=28.4
Q ss_pred cCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHH
Q 020071 29 GNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH 68 (331)
Q Consensus 29 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~ 68 (331)
.|..++..+.+.+.++...+++++||.|+|||..+...+-
T Consensus 607 ~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~ 646 (1151)
T 2eyq_A 607 DQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAF 646 (1151)
T ss_dssp HHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHH
Confidence 3555555566555667655699999999999987764443
No 248
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.01 E-value=0.028 Score=48.47 Aligned_cols=41 Identities=12% Similarity=0.265 Sum_probs=29.9
Q ss_pred CceEEEEeCC-CCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC
Q 020071 111 KHKVVVLDEA-DSMTAGAQQALRRTMEIYSNSTRFALACNVS 151 (331)
Q Consensus 111 ~~~vviide~-d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~ 151 (331)
+++++++||+ ..+.......+.+.+.+...+..+|+++.+.
T Consensus 208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l 249 (306)
T 3nh6_A 208 APGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRL 249 (306)
T ss_dssp CCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcCh
Confidence 5789999996 4667777778888877655555667777653
No 249
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.01 E-value=0.009 Score=57.36 Aligned_cols=41 Identities=24% Similarity=0.416 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcC
Q 020071 30 NLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
++...+.+...+.... -.|++||||||||+++-.+...+..
T Consensus 191 N~~Q~~AV~~al~~~~--~~lI~GPPGTGKT~ti~~~I~~l~~ 231 (646)
T 4b3f_X 191 DTSQKEAVLFALSQKE--LAIIHGPPGTGKTTTVVEIILQAVK 231 (646)
T ss_dssp CHHHHHHHHHHHHCSS--EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCC--ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 6777777887776543 3699999999999877776666543
No 250
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.01 E-value=0.004 Score=49.59 Aligned_cols=22 Identities=41% Similarity=0.758 Sum_probs=20.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|+||+|+||||+++.+.+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999998876
No 251
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.99 E-value=0.0058 Score=49.30 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhc
Q 020071 30 NLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
++...+.+.+.......-.+++.|++|+|||+++..+.....
T Consensus 14 ~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~ 55 (204)
T 4gzl_A 14 LVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAF 55 (204)
T ss_dssp ----------------CEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred cccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCC
Confidence 333444444444444433489999999999999999987543
No 252
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.98 E-value=0.022 Score=43.89 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=20.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||++++.+...-
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7999999999999999998764
No 253
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.98 E-value=0.0045 Score=50.53 Aligned_cols=45 Identities=18% Similarity=0.165 Sum_probs=36.1
Q ss_pred cccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhc
Q 020071 27 IVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 27 ~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+-++.+....+.........+.++|.|++|+|||+++..++..+.
T Consensus 11 l~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 11 LAENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HhhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 345566677777777766777789999999999999999998863
No 254
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.97 E-value=0.037 Score=50.29 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=16.4
Q ss_pred eEEEeCCCCccHHHHH-HHHH
Q 020071 48 NLILAGPPGTGKTTSI-LALA 67 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la-~~l~ 67 (331)
++++.||+|+|||..+ ..+.
T Consensus 4 ~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp EEEEECCTTSCTTTTHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999875 4444
No 255
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=95.97 E-value=0.031 Score=48.47 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=18.3
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
++++.+|+|+|||..+...+...
T Consensus 33 ~~lv~~~TGsGKT~~~~~~~~~~ 55 (337)
T 2z0m_A 33 NVVVRAKTGSGKTAAYAIPILEL 55 (337)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEcCCCCcHHHHHHHHHHhh
Confidence 59999999999998766655443
No 256
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.96 E-value=0.0088 Score=54.29 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=21.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
++|+|++|+||||++..++..+.
T Consensus 102 I~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 102 ILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp EEEECCSSSSTTHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 79999999999999999998874
No 257
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.94 E-value=0.01 Score=47.74 Aligned_cols=40 Identities=25% Similarity=0.106 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHcCC--CCe-EEEeCCCCccHHHHHHHHHHHhc
Q 020071 32 DAVARLGIIARDGN--MPN-LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 32 ~~~~~l~~~l~~~~--~~~-~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+.+..+...+.... .+. +.+.|++|+||||+++.++..+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34555555555432 222 69999999999999999998774
No 258
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.93 E-value=0.007 Score=52.04 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=21.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.||+|+|||+++..+++.+
T Consensus 13 i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEECCCccCHHHHHHHHHHhC
Confidence 6999999999999999999987
No 259
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.92 E-value=0.0066 Score=47.47 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=26.9
Q ss_pred CCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEE
Q 020071 46 MPNLILAGPPGTGKTTSILALAHELLGPNYREAVME 81 (331)
Q Consensus 46 ~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 81 (331)
++-+.|.|++|+||||++..++..+...+....++.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 445799999999999999999998754433333333
No 260
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.92 E-value=0.0049 Score=49.12 Aligned_cols=33 Identities=27% Similarity=0.208 Sum_probs=25.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEee
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELN 83 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 83 (331)
+.|.|++|+||||+++.+++.+... +..++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~--g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQK--GYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEe
Confidence 6899999999999999999987322 33445443
No 261
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.91 E-value=0.012 Score=51.97 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=30.2
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CcEEEEeeCCC
Q 020071 110 GKHKVVVLDEA-DSMTAGAQQALRRTMEIYSN--STRFALACNVS 151 (331)
Q Consensus 110 ~~~~vviide~-d~l~~~~~~~Ll~~le~~~~--~~~~I~~~~~~ 151 (331)
.+++++++||. ..|.......+.+.+.+... +..+|++|.+.
T Consensus 150 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 194 (359)
T 2yyz_A 150 KQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ 194 (359)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 46899999995 56778888888777765432 45677777664
No 262
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.91 E-value=0.0049 Score=49.27 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=21.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcC
Q 020071 49 LILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
+.|.|++|+||||+++.+++.+..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999998743
No 263
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.91 E-value=0.0041 Score=50.54 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+.|.||+|+||||+++.++..+.
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHSTT
T ss_pred EEEECcCCCCHHHHHHHHHhhCC
Confidence 79999999999999999998763
No 264
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.91 E-value=0.026 Score=44.81 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.7
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+++.|++|+|||+++..+...-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998864
No 265
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.89 E-value=0.0073 Score=48.95 Aligned_cols=23 Identities=43% Similarity=0.629 Sum_probs=21.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+.|.||+|+||||+++.++..+.
T Consensus 25 v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 69999999999999999999884
No 266
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.88 E-value=0.094 Score=47.93 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=21.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+++.|+||+|||+++..++..+.
T Consensus 206 iiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 206 IIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 69999999999999999998764
No 267
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.86 E-value=0.088 Score=40.06 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=20.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||+++..+...-
T Consensus 6 i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998754
No 268
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.85 E-value=0.078 Score=42.34 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||+++..+...-
T Consensus 32 i~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 32 LVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhhCC
Confidence 8999999999999999997654
No 269
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.84 E-value=0.0044 Score=50.23 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=22.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcC
Q 020071 49 LILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
++|.|++|+||||+++.+++.+..
T Consensus 13 I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 13 IVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 799999999999999999998743
No 270
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.84 E-value=0.035 Score=48.98 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=31.5
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHHHhc--CCcEEEEeeCCC
Q 020071 110 GKHKVVVLDEA-DSMTAGAQQALRRTMEIYS--NSTRFALACNVS 151 (331)
Q Consensus 110 ~~~~vviide~-d~l~~~~~~~Ll~~le~~~--~~~~~I~~~~~~ 151 (331)
.+++++++||. ..|.+.....+++++.+.. .+..+|+++.+.
T Consensus 180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl 224 (366)
T 3tui_C 180 SNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM 224 (366)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 46899999996 5678888888888887653 256677777654
No 271
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.21 Score=39.25 Aligned_cols=24 Identities=38% Similarity=0.740 Sum_probs=21.1
Q ss_pred CeEEEeCCCCccHHHHHHHHHHHh
Q 020071 47 PNLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 47 ~~~ll~G~~G~GKt~la~~l~~~l 70 (331)
..+++.|++|+|||+++..+...-
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 348999999999999999998754
No 272
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.83 E-value=0.014 Score=51.79 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=30.3
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CcEEEEeeCCC
Q 020071 110 GKHKVVVLDEA-DSMTAGAQQALRRTMEIYSN--STRFALACNVS 151 (331)
Q Consensus 110 ~~~~vviide~-d~l~~~~~~~Ll~~le~~~~--~~~~I~~~~~~ 151 (331)
.+++++++||. ..|.......+...+.+... +..+|++|.+.
T Consensus 158 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 202 (372)
T 1v43_A 158 VEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 202 (372)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 46899999995 56778888888777765432 45677777664
No 273
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.83 E-value=0.041 Score=42.69 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.6
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+++.|++|+|||+++..+...-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998754
No 274
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.83 E-value=0.0073 Score=50.60 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=21.5
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+.|.|++|+||||+++.+++.+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37999999999999999999987
No 275
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=95.83 E-value=0.038 Score=51.19 Aligned_cols=38 Identities=16% Similarity=0.004 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHh
Q 020071 30 NLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+.....+...+.. .+++++||.|+|||..+..++...
T Consensus 115 ~~~Q~~ai~~~~~~---~~~ll~~~tGsGKT~~~~~~~~~~ 152 (510)
T 2oca_A 115 HWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYY 152 (510)
T ss_dssp CHHHHHHHHHHHHH---SEEEEECCSTTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHHHH
Confidence 45555556555554 358999999999999887776654
No 276
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.81 E-value=0.04 Score=45.57 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=26.8
Q ss_pred CCCceEEEEeCCCCCCHH-HHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 109 PGKHKVVVLDEADSMTAG-AQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 109 ~~~~~vviide~d~l~~~-~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
..+-+++||||+|.+... -...+..++...+.+..+++.+..
T Consensus 174 ~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT 216 (242)
T 3fe2_A 174 LRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 216 (242)
T ss_dssp CTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESC
T ss_pred cccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEee
Confidence 345789999999987542 234455566655566666665443
No 277
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.81 E-value=0.0078 Score=49.75 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=21.7
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+.|.||+|+||||+++.+++.+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999988
No 278
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.80 E-value=0.0049 Score=49.72 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.4
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+.|.|++|+||||+++.+++ +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 478999999999999999999 6
No 279
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.79 E-value=0.032 Score=43.93 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||+++..+...-
T Consensus 14 i~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998753
No 280
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.79 E-value=0.0057 Score=51.01 Aligned_cols=23 Identities=35% Similarity=0.723 Sum_probs=21.6
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+.|.||+|+||||+++.+++.+
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999887
No 281
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.79 E-value=0.0053 Score=53.52 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=22.1
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhc
Q 020071 48 NLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
.++|.||+|+|||+++..+++.+.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHCC
Confidence 479999999999999999999883
No 282
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.78 E-value=0.018 Score=44.23 Aligned_cols=24 Identities=17% Similarity=0.439 Sum_probs=20.9
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhc
Q 020071 48 NLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
.+++.|++|+|||+++..+.....
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~~ 30 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGIF 30 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 389999999999999999987543
No 283
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.78 E-value=0.053 Score=48.15 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=29.8
Q ss_pred CceEEEEeCC-CCCCHHHHHHHHHHHHHhcC--CcEEEEeeCCC
Q 020071 111 KHKVVVLDEA-DSMTAGAQQALRRTMEIYSN--STRFALACNVS 151 (331)
Q Consensus 111 ~~~vviide~-d~l~~~~~~~Ll~~le~~~~--~~~~I~~~~~~ 151 (331)
+++++++||. ..|.......+++.+.+... +..+|++|.+.
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~ 194 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 194 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 5889999995 56777777888777765432 46677777664
No 284
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.78 E-value=0.029 Score=44.42 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=21.3
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhc
Q 020071 48 NLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
.+++.|++|+|||+++..+...-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~~ 48 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDTF 48 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCcCHHHHHHHHhcCCC
Confidence 389999999999999999988653
No 285
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.78 E-value=0.024 Score=48.68 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=21.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+.|.|++|+||||++..++..+.
T Consensus 108 i~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 79999999999999999998875
No 286
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.76 E-value=0.096 Score=47.72 Aligned_cols=48 Identities=23% Similarity=0.170 Sum_probs=32.1
Q ss_pred HHHHHHHcCCCCe--EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecC
Q 020071 36 RLGIIARDGNMPN--LILAGPPGTGKTTSILALAHELLGPNYREAVMELNAS 85 (331)
Q Consensus 36 ~l~~~l~~~~~~~--~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 85 (331)
.|...+ .|-.+. +++.|+||+|||+++..++...... .+.+++.++..
T Consensus 189 ~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE 238 (444)
T 2q6t_A 189 ELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE 238 (444)
T ss_dssp HHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS
T ss_pred hhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC
Confidence 455555 443333 6999999999999999999876432 12345555543
No 287
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.75 E-value=0.0051 Score=49.95 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.4
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcC
Q 020071 48 NLILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
.++|.|++|+||||+++.+++.+..
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3799999999999999999998743
No 288
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.74 E-value=0.042 Score=47.15 Aligned_cols=25 Identities=40% Similarity=0.484 Sum_probs=21.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGP 73 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~ 73 (331)
+.+.|+.|+||||++..++..+...
T Consensus 101 i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 101 WFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 6788999999999999999887543
No 289
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.74 E-value=0.009 Score=48.15 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=21.6
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+.|.|++|+||||+++.+++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 47999999999999999999988
No 290
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.74 E-value=0.0071 Score=48.45 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=23.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEE
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVME 81 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 81 (331)
+.|+|++|+||||+++.+++.+ +.+++.
T Consensus 15 IgltG~~GSGKSTva~~L~~~l-----g~~vid 42 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKY-----GAHVVN 42 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH-----CCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhc-----CCEEEE
Confidence 6899999999999999999987 555554
No 291
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.73 E-value=0.0053 Score=49.39 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.5
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.++|.|++|+||||+++.+++.+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 37999999999999999999987
No 292
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.69 E-value=0.015 Score=49.73 Aligned_cols=23 Identities=26% Similarity=0.716 Sum_probs=21.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+.+.|++|+||||+++.++..+.
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 69999999999999999999874
No 293
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.69 E-value=0.068 Score=40.57 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=21.1
Q ss_pred CeEEEeCCCCccHHHHHHHHHHHh
Q 020071 47 PNLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 47 ~~~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.+++.|++|+|||+++..+...-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999998753
No 294
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.075 Score=53.58 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=31.6
Q ss_pred CchhhhcCCCCCCc--cccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHH
Q 020071 13 IPWVEKYRPTKVCD--IVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAH 68 (331)
Q Consensus 13 ~~~~~~~~p~~~~~--~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~ 68 (331)
.||.+...|..... +--.+...+.+.... ++. ++++.+|+|+|||..+.....
T Consensus 69 ~~~~~~~~p~~~~~~~f~L~~~Q~eai~~l~-~g~--~vLV~apTGSGKTlva~lai~ 123 (1010)
T 2xgj_A 69 TPIAEHKRVNEARTYPFTLDPFQDTAISCID-RGE--SVLVSAHTSAGKTVVAEYAIA 123 (1010)
T ss_dssp CCGGGCCCSSCSCCCSSCCCHHHHHHHHHHH-HTC--EEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCcccChhhHHhCCCCCCHHHHHHHHHHH-cCC--CEEEECCCCCChHHHHHHHHH
Confidence 46766665543111 222444444555443 343 599999999999998754443
No 295
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.67 E-value=0.041 Score=42.03 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||+++..+...-
T Consensus 7 i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 8999999999999999998754
No 296
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.67 E-value=0.0063 Score=55.43 Aligned_cols=36 Identities=33% Similarity=0.444 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhc
Q 020071 33 AVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 33 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
.+..|....+.+ .++|+|++|+|||++++.++....
T Consensus 141 ~ID~L~pi~kGq---~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 141 VVDLLAPYIKGG---KIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHHSCEETTC---EEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCC---EEEEECCCCCCccHHHHHHHhhhh
Confidence 445554444333 389999999999999999987653
No 297
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.67 E-value=0.013 Score=47.46 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=21.8
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhc
Q 020071 48 NLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
.++|.|++|+||||+++.+++.+.
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 379999999999999999999874
No 298
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.67 E-value=0.0065 Score=48.34 Aligned_cols=22 Identities=45% Similarity=0.777 Sum_probs=20.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.|.||+|+||||+++.++...
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHhccc
Confidence 6899999999999999998754
No 299
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.65 E-value=0.0057 Score=49.32 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=20.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.|.||+|+||||+++.++..+
T Consensus 9 i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 9 IVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 7999999999999999999876
No 300
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.64 E-value=0.0079 Score=47.37 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=21.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+.|.|++|+||||+++.++..+.
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 69999999999999999999873
No 301
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.64 E-value=0.035 Score=43.77 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=20.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||+++..+....
T Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998764
No 302
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.63 E-value=0.12 Score=46.92 Aligned_cols=25 Identities=40% Similarity=0.507 Sum_probs=22.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGP 73 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~ 73 (331)
+++.|+.|+||||++..++..+...
T Consensus 103 I~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 103 VLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh
Confidence 6889999999999999999888654
No 303
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.62 E-value=0.02 Score=49.82 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=27.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCC----CCCCceEEeecCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGP----NYREAVMELNASD 86 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~----~~~~~~~~~~~~~ 86 (331)
++|+||+|+|||+++..++...... +.+..++.++...
T Consensus 110 ~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 110 TEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred EEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 6999999999999999999875322 0123455665554
No 304
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.62 E-value=0.012 Score=46.40 Aligned_cols=38 Identities=32% Similarity=0.399 Sum_probs=27.3
Q ss_pred CCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEee
Q 020071 46 MPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELN 83 (331)
Q Consensus 46 ~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 83 (331)
.+.+.|.|++|+||||++..+...+...+.....+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~ 43 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeC
Confidence 34579999999999999999998875433333344433
No 305
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.61 E-value=0.0072 Score=48.65 Aligned_cols=22 Identities=41% Similarity=0.747 Sum_probs=20.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.|.||+|+||||+++.++..+
T Consensus 10 i~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHhhC
Confidence 6999999999999999999875
No 306
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.61 E-value=0.022 Score=46.60 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=20.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+.|.||+|+||||+++.++..+.
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 69999999999999999998653
No 307
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=95.58 E-value=0.027 Score=51.57 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=17.5
Q ss_pred eEEEeCCCCccHHHH-HHHHHHHh
Q 020071 48 NLILAGPPGTGKTTS-ILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~l-a~~l~~~l 70 (331)
++++.||+|+|||.. ...+...+
T Consensus 23 ~vlv~a~TGsGKT~~~~l~il~~~ 46 (459)
T 2z83_A 23 MTVLDLHPGSGKTRKILPQIIKDA 46 (459)
T ss_dssp EEEECCCTTSCTTTTHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999986 45554443
No 308
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.56 E-value=0.0078 Score=48.36 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.|.||+|+||||+++.+.+..
T Consensus 22 ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 22 LVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhhC
Confidence 7999999999999999999876
No 309
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.56 E-value=0.022 Score=44.66 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=19.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||+++..+....
T Consensus 8 i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7999999999999999998654
No 310
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.55 E-value=0.0088 Score=48.27 Aligned_cols=20 Identities=35% Similarity=0.391 Sum_probs=18.9
Q ss_pred EEEeCCCCccHHHHHHHHHH
Q 020071 49 LILAGPPGTGKTTSILALAH 68 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~ 68 (331)
+.|.|++|+||||+++.++.
T Consensus 5 i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999987
No 311
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.51 E-value=0.0093 Score=53.70 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=37.3
Q ss_pred CchhhhcCCCCCCccccCHHHHHHHHHHHHcCC------------------CCeEEEeCCCCccHHHHHHHHHHHh
Q 020071 13 IPWVEKYRPTKVCDIVGNLDAVARLGIIARDGN------------------MPNLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 13 ~~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~------------------~~~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.++..-|.+.....-.-...++..+.-.+..|. ...+.|.||+|+||||+.+.++...
T Consensus 18 ~~~~~~~~~~~~~~k~~~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 18 SSFTGYFKKFNTGRKIISQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp HHHHHHHTTSCGGGCSSCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred hhhHHhhhhhccccccCCHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 344445544322222224556666666676666 1137999999999999999998754
No 312
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.50 E-value=0.0081 Score=47.75 Aligned_cols=23 Identities=39% Similarity=0.691 Sum_probs=21.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+.|.||+|+||||+++.++..+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 68999999999999999998763
No 313
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.49 E-value=0.01 Score=51.86 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=21.6
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+++.||+|+|||+++..+++.+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 37999999999999999999988
No 314
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.47 E-value=0.0093 Score=47.98 Aligned_cols=22 Identities=41% Similarity=0.733 Sum_probs=20.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.|.||+|+||||+++.+...+
T Consensus 7 i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 7999999999999999999876
No 315
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.47 E-value=0.091 Score=41.71 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=19.6
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+++.|++|+|||++++.+...+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48999999999999998776643
No 316
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.46 E-value=0.11 Score=41.85 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=21.5
Q ss_pred CeEEEeCCCCccHHHHHHHHHHHhc
Q 020071 47 PNLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 47 ~~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
..+++.|++|+|||+++..+...-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~~ 32 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQY 32 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3489999999999999999987543
No 317
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.45 E-value=0.054 Score=41.48 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=19.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||+++..+...-
T Consensus 9 i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7999999999999999998753
No 318
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.45 E-value=0.012 Score=49.34 Aligned_cols=23 Identities=43% Similarity=0.618 Sum_probs=21.6
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+.|.||+|+||||+++.+++.+
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 37999999999999999999987
No 319
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.44 E-value=0.057 Score=43.05 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.4
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+++.|++|+|||+++..+...-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 38999999999999999998754
No 320
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.43 E-value=0.036 Score=49.99 Aligned_cols=51 Identities=18% Similarity=0.271 Sum_probs=34.5
Q ss_pred CCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCC
Q 020071 22 TKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 73 (331)
Q Consensus 22 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~ 73 (331)
..++++--.......+...+. ..-..+++.||+|+||||+.+.+...+...
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLIK-RPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHHT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred CCHHHcCCCHHHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 345555444444555666643 221237999999999999999999988543
No 321
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=95.42 E-value=0.045 Score=50.58 Aligned_cols=102 Identities=19% Similarity=0.211 Sum_probs=61.2
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcc-cC--------------------
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKK-VT-------------------- 106 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-~~-------------------- 106 (331)
+.++.-+.|+|||..+-.++..+...+...+++.+.+.. -..+|.+.+..+.... ..
T Consensus 58 ~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~--l~~qw~~e~~~~~~~~~v~~~~g~~~~~~~~~~~ivi~t 135 (500)
T 1z63_A 58 GICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS--VLKNWEEELSKFAPHLRFAVFHEDRSKIKLEDYDIILTT 135 (500)
T ss_dssp CEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECST--THHHHHHHHHHHCTTSCEEECSSSTTSCCGGGSSEEEEE
T ss_pred CEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHH--HHHHHHHHHHHHCCCceEEEEecCchhccccCCcEEEee
Confidence 488999999999998888877765433334455554432 3466776666553210 00
Q ss_pred ---------CCCCCceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCC
Q 020071 107 ---------LPPGKHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSS 152 (331)
Q Consensus 107 ---------~~~~~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~ 152 (331)
+......+||+||+|.+.... ....+.+...+...++.++++...
T Consensus 136 ~~~l~~~~~l~~~~~~~vIvDEaH~~kn~~-~~~~~~l~~l~~~~~l~LTaTP~~ 189 (500)
T 1z63_A 136 YAVLLRDTRLKEVEWKYIVIDEAQNIKNPQ-TKIFKAVKELKSKYRIALTGTPIE 189 (500)
T ss_dssp HHHHTTCHHHHTCCEEEEEEETGGGGSCTT-SHHHHHHHTSCEEEEEEECSSCST
T ss_pred HHHHhccchhcCCCcCEEEEeCccccCCHh-HHHHHHHHhhccCcEEEEecCCCC
Confidence 001245799999999985321 223344444445566777776544
No 322
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.41 E-value=0.024 Score=50.12 Aligned_cols=38 Identities=37% Similarity=0.532 Sum_probs=27.5
Q ss_pred CCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEe
Q 020071 45 NMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMEL 82 (331)
Q Consensus 45 ~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 82 (331)
..+.+.|.|++|+||||++..++..+...+....++..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 33347999999999999999999887554433333333
No 323
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.41 E-value=0.054 Score=41.51 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||+++..+...-
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7999999999999999998754
No 324
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.40 E-value=0.061 Score=41.81 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=20.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||+++..+...-
T Consensus 15 i~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998753
No 325
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.38 E-value=0.025 Score=45.87 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||+++..+...-
T Consensus 30 i~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 30 LVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998754
No 326
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.37 E-value=0.024 Score=50.81 Aligned_cols=39 Identities=21% Similarity=0.095 Sum_probs=26.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCC----CCCceEEeecCCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPN----YREAVMELNASDD 87 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~----~~~~~~~~~~~~~ 87 (331)
+.|+||+|+|||+++..++-...... .....+.++....
T Consensus 181 ~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~ 223 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT 223 (400)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred EEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc
Confidence 69999999999999998875432211 1234666665543
No 327
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.34 E-value=0.13 Score=44.91 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=25.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeec
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNA 84 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 84 (331)
+++.|+||+|||+++..++...... +.++..++.
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSl 82 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSL 82 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeC
Confidence 6999999999999999998876442 334444443
No 328
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.34 E-value=0.094 Score=41.23 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=20.9
Q ss_pred CeEEEeCCCCccHHHHHHHHHHHh
Q 020071 47 PNLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 47 ~~~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.+++.|++|+|||+++..+...-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 458999999999999999997653
No 329
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.33 E-value=0.081 Score=41.54 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=21.3
Q ss_pred CCCCeEEEeCCCCccHHHHHHHHHHH
Q 020071 44 GNMPNLILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 44 ~~~~~~ll~G~~G~GKt~la~~l~~~ 69 (331)
.....+++.|++|+|||++...+...
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 33334899999999999999999853
No 330
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.31 E-value=0.027 Score=48.91 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=20.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|+|++|+|||+++..++...
T Consensus 101 ~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 101 TEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6999999999999999999764
No 331
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.30 E-value=0.04 Score=41.96 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=20.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+++.|++|+|||+++..+.....
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~~ 28 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNHF 28 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHhCcC
Confidence 89999999999999999987643
No 332
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.29 E-value=0.057 Score=42.14 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||+++..+...-
T Consensus 21 i~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhhCC
Confidence 8999999999999999998754
No 333
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.28 E-value=0.12 Score=46.95 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=31.7
Q ss_pred HHHHHHHcCCCCe--EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecC
Q 020071 36 RLGIIARDGNMPN--LILAGPPGTGKTTSILALAHELLGPNYREAVMELNAS 85 (331)
Q Consensus 36 ~l~~~l~~~~~~~--~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 85 (331)
.|.+.+ .|-.+. +++.|+||+|||+++..++.....+ +.++..++..
T Consensus 186 ~LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE 234 (444)
T 3bgw_A 186 ELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE 234 (444)
T ss_dssp HHHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS
T ss_pred HHHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC
Confidence 344444 343333 6999999999999999999887544 3345555443
No 334
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.28 E-value=0.0051 Score=49.89 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+.|.|++|+||||+++.+++.+.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999884
No 335
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.28 E-value=0.065 Score=42.21 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.4
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+++.|++|+|||+++..+...-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998654
No 336
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.24 E-value=0.02 Score=45.08 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||+++..+...-
T Consensus 10 i~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7999999999999999998754
No 337
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.18 E-value=0.016 Score=47.24 Aligned_cols=21 Identities=43% Similarity=0.577 Sum_probs=19.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.|.|++|+||||+++.+++ +
T Consensus 7 I~i~G~~GSGKST~~~~L~~-l 27 (218)
T 1vht_A 7 VALTGGIGSGKSTVANAFAD-L 27 (218)
T ss_dssp EEEECCTTSCHHHHHHHHHH-T
T ss_pred EEEECCCCCCHHHHHHHHHH-c
Confidence 79999999999999999987 5
No 338
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.18 E-value=0.17 Score=46.87 Aligned_cols=35 Identities=11% Similarity=-0.046 Sum_probs=26.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeec
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELNA 84 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 84 (331)
+++.|+||+|||+++..++.....+. +.++..++.
T Consensus 245 ~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~ 279 (503)
T 1q57_A 245 IMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAML 279 (503)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEES
T ss_pred EEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEec
Confidence 69999999999999999998875431 234444443
No 339
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.18 E-value=0.018 Score=47.15 Aligned_cols=38 Identities=26% Similarity=0.228 Sum_probs=23.8
Q ss_pred HHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcC
Q 020071 35 ARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 35 ~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
..+..........-+.|.|++|+||||.++.+++.+..
T Consensus 10 ~~~~~~~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 10 GTLEAQTQGPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp ---------CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34444444433333799999999999999999998853
No 340
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.16 E-value=0.057 Score=42.68 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=20.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+++.|++|+|||+++..+...-.
T Consensus 19 i~v~G~~~~GKSsli~~l~~~~~ 41 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADDTY 41 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHHcCCC
Confidence 89999999999999999987543
No 341
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.16 E-value=0.02 Score=54.38 Aligned_cols=43 Identities=14% Similarity=0.253 Sum_probs=31.5
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCC
Q 020071 110 GKHKVVVLDEA-DSMTAGAQQALRRTMEIYSNSTRFALACNVSS 152 (331)
Q Consensus 110 ~~~~vviide~-d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~ 152 (331)
.+++++++||+ ..+.......+.+.+.+...+..+|+++.+.+
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~ 551 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLN 551 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTT
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 35789999996 45677777777777776555666777777654
No 342
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.15 E-value=0.011 Score=46.27 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=16.0
Q ss_pred EEEeCCCCccHHHHHHH
Q 020071 49 LILAGPPGTGKTTSILA 65 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~ 65 (331)
+.+.||+|+||||+++.
T Consensus 12 ~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 69999999999999994
No 343
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.15 E-value=0.043 Score=44.02 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=21.0
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhc
Q 020071 48 NLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
.+++.|++|+|||+++..+.....
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~~ 51 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGLF 51 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 389999999999999999987643
No 344
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.12 E-value=0.049 Score=42.65 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+++.|++|+|||+++..+...-.
T Consensus 13 i~v~G~~~~GKSsli~~l~~~~~ 35 (186)
T 2bme_A 13 FLVIGNAGTGKSCLLHQFIEKKF 35 (186)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHcCCC
Confidence 89999999999999999987543
No 345
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.12 E-value=0.0085 Score=47.99 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=20.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
++|.||+|+|||++|..+++..
T Consensus 37 ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 37 VLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7999999999999999999876
No 346
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.11 E-value=0.013 Score=45.63 Aligned_cols=22 Identities=32% Similarity=0.684 Sum_probs=19.4
Q ss_pred eEEEeCCCCccHHHHHHHHHHH
Q 020071 48 NLILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~ 69 (331)
.+++.|++|+|||+++..+...
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999998654
No 347
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.10 E-value=0.068 Score=42.58 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=19.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||+++..+...-
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999987653
No 348
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.10 E-value=0.2 Score=39.33 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=20.9
Q ss_pred CCeEEEeCCCCccHHHHHHHHHHH
Q 020071 46 MPNLILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 46 ~~~~ll~G~~G~GKt~la~~l~~~ 69 (331)
.+.+++.|++|+|||+++..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345899999999999999999764
No 349
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.08 E-value=0.24 Score=37.58 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=20.6
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhc
Q 020071 48 NLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
.+++.|++|+|||+++..+...-.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~ 25 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc
Confidence 378999999999999999986543
No 350
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.08 E-value=0.12 Score=47.44 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=21.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+++.|.+|+||||+++.+++.+.
T Consensus 42 IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 42 IVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 79999999999999999999874
No 351
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.06 E-value=0.026 Score=44.83 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+++.|++|+|||+++..+...-.
T Consensus 26 i~~vG~~~~GKSsl~~~l~~~~~ 48 (194)
T 3reg_A 26 IVVVGDGAVGKTCLLLAFSKGEI 48 (194)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 89999999999999999987643
No 352
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.05 E-value=0.11 Score=44.48 Aligned_cols=25 Identities=40% Similarity=0.405 Sum_probs=21.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGP 73 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~ 73 (331)
+.+.|++|+||||++..++..+...
T Consensus 101 i~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 101 IMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp EEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 6889999999999999999887543
No 353
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.05 E-value=0.098 Score=49.49 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=31.3
Q ss_pred CceEEEEeCC-CCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC
Q 020071 111 KHKVVVLDEA-DSMTAGAQQALRRTMEIYSNSTRFALACNVS 151 (331)
Q Consensus 111 ~~~vviide~-d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~ 151 (331)
+++++++||+ ..+.......+.+.+.+...+..+|+++.+.
T Consensus 497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l 538 (587)
T 3qf4_A 497 KPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKI 538 (587)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCh
Confidence 5789999997 4667777888888887765566677777764
No 354
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.05 E-value=0.065 Score=41.93 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+++.|++|+|||+++..+...-.
T Consensus 7 i~v~G~~~~GKSsli~~l~~~~~ 29 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQNHF 29 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHhCCC
Confidence 89999999999999999987543
No 355
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.05 E-value=0.024 Score=45.69 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=20.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+++.|++|+|||+++..+...-.
T Consensus 31 i~vvG~~~vGKSsLi~~l~~~~~ 53 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFAKDCF 53 (205)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 89999999999999999988643
No 356
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.04 E-value=0.073 Score=42.07 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=20.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||+++..+...-
T Consensus 26 i~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998754
No 357
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.04 E-value=0.016 Score=44.86 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=21.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.|.||.|+||||+++.++..+
T Consensus 36 v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6999999999999999999987
No 358
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=95.03 E-value=0.076 Score=54.06 Aligned_cols=40 Identities=15% Similarity=0.254 Sum_probs=25.3
Q ss_pred CceEEEEeCCCCCCHHH-HHHHHHHHHHhcCCcEEEEeeCC
Q 020071 111 KHKVVVLDEADSMTAGA-QQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 111 ~~~vviide~d~l~~~~-~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
+..+|||||+|++.... ...+..++...+.+..+|+.|..
T Consensus 290 ~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSAT 330 (1108)
T 3l9o_A 290 EVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSAT 330 (1108)
T ss_dssp HEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECS
T ss_pred cCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEEEEcCC
Confidence 46899999999996533 33344455555556666555433
No 359
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.03 E-value=0.015 Score=47.93 Aligned_cols=24 Identities=42% Similarity=0.715 Sum_probs=22.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcC
Q 020071 49 LILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
++|.|++|+||||+++.+++.+..
T Consensus 29 i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhc
Confidence 799999999999999999999854
No 360
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.03 E-value=0.02 Score=46.45 Aligned_cols=42 Identities=26% Similarity=0.310 Sum_probs=29.8
Q ss_pred hcCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHH
Q 020071 18 KYRPTKVCDIVGNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 18 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~ 69 (331)
..+|+++.+ ..++.. +..|. .+.+.||.|+||||+.+.++..
T Consensus 4 ~i~pk~~g~----~~~l~~----i~~Ge--~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 4 VIRPKTLGQ----KHYVDA----IDTNT--IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CCCCCSHHH----HHHHHH----HHHCS--EEEEECCTTSSTTHHHHHHHHH
T ss_pred ccccCCHhH----HHHHHh----ccCCC--EEEEECCCCCCHHHHHHHHhcC
Confidence 457777732 223322 45554 3789999999999999999876
No 361
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.02 E-value=0.19 Score=41.76 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.3
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 020071 49 LILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~ 69 (331)
++|.|.+|+|||+++..+...
T Consensus 24 I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 24 LILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEESSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 899999999999999998764
No 362
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.01 E-value=0.15 Score=41.89 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.5
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.++|.|++|+|||+++..+...-
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 48999999999999999998654
No 363
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.00 E-value=0.045 Score=42.56 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.5
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+++.|++|+|||+++..+...-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998754
No 364
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.00 E-value=0.02 Score=46.55 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=21.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.|.|++|+|||++++.+++.+
T Consensus 6 i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 6 IALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 7999999999999999999987
No 365
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.98 E-value=0.015 Score=47.60 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=21.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+.|.||+|+||||+.+.++....
T Consensus 19 i~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 19 YIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhccCC
Confidence 69999999999999999998764
No 366
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.96 E-value=0.12 Score=41.66 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=19.3
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 020071 49 LILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~ 69 (331)
++|.|++|+|||+++..+...
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 899999999999999998764
No 367
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.93 E-value=0.13 Score=40.34 Aligned_cols=22 Identities=36% Similarity=0.363 Sum_probs=20.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||+++..+...-
T Consensus 25 i~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998754
No 368
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.93 E-value=0.1 Score=40.52 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=19.6
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 020071 49 LILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~ 69 (331)
+.|.|++|+|||++.+.+...
T Consensus 7 i~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999865
No 369
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.91 E-value=0.038 Score=44.93 Aligned_cols=25 Identities=40% Similarity=0.527 Sum_probs=22.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGP 73 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~ 73 (331)
+.|.|++|+||||.++.+++.+...
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 6999999999999999999998654
No 370
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.90 E-value=0.016 Score=46.51 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=19.9
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 020071 49 LILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~ 69 (331)
+.|.|++|+||||+++.+++.
T Consensus 11 I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEECTTSCHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHC
Confidence 799999999999999999985
No 371
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.89 E-value=0.016 Score=47.38 Aligned_cols=22 Identities=45% Similarity=0.785 Sum_probs=20.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.|.||+|+||||+++.++..+
T Consensus 26 ~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 26 LVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 7999999999999999999866
No 372
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.89 E-value=0.014 Score=47.20 Aligned_cols=22 Identities=45% Similarity=0.519 Sum_probs=20.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.|.||+|+||||+++.++..+
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999987
No 373
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.86 E-value=0.23 Score=44.81 Aligned_cols=26 Identities=38% Similarity=0.470 Sum_probs=22.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPN 74 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~ 74 (331)
+.+.|+.|+||||++..++..+...+
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~~~g 126 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKGKG 126 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 68889999999999999999886543
No 374
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.85 E-value=0.052 Score=43.01 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=18.7
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 020071 49 LILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~ 69 (331)
+++.|++|+|||+++..+...
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999998754
No 375
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.83 E-value=0.055 Score=42.28 Aligned_cols=23 Identities=22% Similarity=0.560 Sum_probs=20.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+++.|++|+|||+++..+.....
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~~~ 43 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQKIF 43 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHhCCC
Confidence 79999999999999999987643
No 376
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.82 E-value=0.055 Score=41.37 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=20.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||+++..+...-
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7999999999999999998754
No 377
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.81 E-value=0.26 Score=41.46 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=19.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||+++..+...-
T Consensus 42 I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 42 ILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999998653
No 378
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.81 E-value=0.031 Score=46.13 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=21.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.|.|++|+||||+++.+++.+
T Consensus 19 i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 19 IAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp EEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7999999999999999999988
No 379
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.79 E-value=0.028 Score=46.54 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=22.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGP 73 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~ 73 (331)
+.|.|++|+||||.++.+++.+...
T Consensus 30 i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 30 IVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp EEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 7999999999999999999988544
No 380
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.79 E-value=0.062 Score=42.78 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=20.5
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+++.|++|+|||+++..+...-
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998653
No 381
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.78 E-value=0.062 Score=41.75 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+++.|++|+|||+++..+...-.
T Consensus 13 i~v~G~~~~GKssli~~l~~~~~ 35 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFKDGAF 35 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHHhCCC
Confidence 89999999999999999987543
No 382
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.78 E-value=0.08 Score=50.01 Aligned_cols=43 Identities=14% Similarity=0.333 Sum_probs=31.6
Q ss_pred CceEEEEeCC-CCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCC
Q 020071 111 KHKVVVLDEA-DSMTAGAQQALRRTMEIYSNSTRFALACNVSSK 153 (331)
Q Consensus 111 ~~~vviide~-d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~ 153 (331)
+++++++||+ ..+.......+.+.+.+...+..+|+++.+.+.
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 538 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLST 538 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 5789999996 466777778888888766555667777776543
No 383
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.78 E-value=0.26 Score=39.71 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=21.3
Q ss_pred CCCeEEEeCCCCccHHHHHHHHHHH
Q 020071 45 NMPNLILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 45 ~~~~~ll~G~~G~GKt~la~~l~~~ 69 (331)
..+.+++.|++|+|||+++..+...
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3445899999999999999998765
No 384
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.76 E-value=0.053 Score=52.68 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=17.7
Q ss_pred eEEEeCCCCccHHHHHH-HHHHHh
Q 020071 48 NLILAGPPGTGKTTSIL-ALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~-~l~~~l 70 (331)
+++++||+|+|||..+. .+.+.+
T Consensus 41 ~~lv~apTGsGKT~~~~l~il~~~ 64 (720)
T 2zj8_A 41 NALISIPTASGKTLIAEIAMVHRI 64 (720)
T ss_dssp EEEEECCGGGCHHHHHHHHHHHHH
T ss_pred cEEEEcCCccHHHHHHHHHHHHHH
Confidence 69999999999998873 444333
No 385
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.75 E-value=0.032 Score=44.18 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=20.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||+++..+...-
T Consensus 21 i~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 21 CVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998764
No 386
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.75 E-value=0.087 Score=49.81 Aligned_cols=43 Identities=16% Similarity=0.316 Sum_probs=31.3
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCC
Q 020071 110 GKHKVVVLDEA-DSMTAGAQQALRRTMEIYSNSTRFALACNVSS 152 (331)
Q Consensus 110 ~~~~vviide~-d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~ 152 (331)
.+++++++||+ ..+.......+.+.+.+...+..+|+++.+.+
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 540 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLS 540 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 45889999997 45677777788888876655556777776643
No 387
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.74 E-value=0.019 Score=46.48 Aligned_cols=22 Identities=32% Similarity=0.702 Sum_probs=20.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.|.||+|+||||+++.++..+
T Consensus 23 ~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 7999999999999999999876
No 388
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.73 E-value=0.031 Score=45.44 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=23.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPN 74 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~ 74 (331)
+.|.|++|+||||.++.+++.+...+
T Consensus 6 i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 6 IVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 79999999999999999999986543
No 389
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.72 E-value=0.031 Score=51.69 Aligned_cols=44 Identities=16% Similarity=0.117 Sum_probs=32.1
Q ss_pred cCHHHHHHHHHHH--HcCCCCeEEEeCCCCccHHHHHHHHHHHhcC
Q 020071 29 GNLDAVARLGIIA--RDGNMPNLILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 29 g~~~~~~~l~~~l--~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
..+++.+.+++.. .......++|.|.+|+||||+++++++.+..
T Consensus 376 ~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 376 SYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4456666666655 2222234799999999999999999999953
No 390
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.72 E-value=0.16 Score=49.66 Aligned_cols=41 Identities=20% Similarity=0.117 Sum_probs=30.9
Q ss_pred cCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHH
Q 020071 29 GNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 29 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~ 69 (331)
.|.+++..+.+.+.++...++++.||.|+|||..+...+-.
T Consensus 372 ~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~ 412 (780)
T 1gm5_A 372 AQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILD 412 (780)
T ss_dssp HHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHH
Confidence 46777777777777766556899999999999877655443
No 391
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.71 E-value=0.013 Score=45.93 Aligned_cols=39 Identities=31% Similarity=0.320 Sum_probs=26.7
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCC
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASD 86 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (331)
.+.|.|++|+||||+++.+...+...+...-.+.++..+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 478999999999999999999885433223345555443
No 392
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.70 E-value=0.017 Score=49.24 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=19.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.|+|++|+||||+++.++ .+
T Consensus 78 I~I~G~~GSGKSTva~~La-~l 98 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLK-NL 98 (281)
T ss_dssp EEEEECTTSCHHHHHHHHH-HH
T ss_pred EEEECCCCCCHHHHHHHHH-HC
Confidence 7999999999999999999 45
No 393
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.70 E-value=0.017 Score=47.87 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=18.7
Q ss_pred EEEeCCCCccHHHHHHHHHH
Q 020071 49 LILAGPPGTGKTTSILALAH 68 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~ 68 (331)
+.|.||+|+||||+++.++.
T Consensus 33 ~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 79999999999999999984
No 394
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.69 E-value=0.012 Score=47.62 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.+.|++|+||||+++.+++.+
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 6899999999999999999865
No 395
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.68 E-value=0.058 Score=41.38 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=20.2
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+++.|++|+|||+++..+...-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 38999999999999999998653
No 396
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.68 E-value=0.066 Score=46.42 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=21.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+.|.||+|+||||+++.+...+.
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 69999999999999999998874
No 397
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.68 E-value=0.041 Score=44.51 Aligned_cols=21 Identities=33% Similarity=0.648 Sum_probs=18.9
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 020071 49 LILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~ 69 (331)
+++.|++|+|||+++..+...
T Consensus 37 i~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 37 VVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 899999999999999999754
No 398
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.67 E-value=0.043 Score=42.01 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=18.7
Q ss_pred eEEEeCCCCccHHHHHHHHHH
Q 020071 48 NLILAGPPGTGKTTSILALAH 68 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~ 68 (331)
.+++.|++|+|||++++.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 389999999999999998854
No 399
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.61 E-value=0.055 Score=41.57 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.7
Q ss_pred eEEEeCCCCccHHHHHHHHHHH
Q 020071 48 NLILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~ 69 (331)
.+++.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999864
No 400
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.59 E-value=0.031 Score=43.59 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=20.4
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+++.|++|+|||+++..+...-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998653
No 401
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.59 E-value=0.072 Score=46.38 Aligned_cols=25 Identities=40% Similarity=0.542 Sum_probs=22.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGP 73 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~ 73 (331)
+.|.||+|+||||+++.++..+...
T Consensus 132 i~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 6999999999999999999887543
No 402
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.58 E-value=0.07 Score=42.10 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=20.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||+++..+...-
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998754
No 403
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.57 E-value=0.027 Score=52.25 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhc
Q 020071 30 NLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
...++..+.-.+..|. .+++.||+|+||||+++++...+.
T Consensus 246 ~~~~l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 246 PSGVLAYLWLAIEHKF--SAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp CHHHHHHHHHHHHTTC--CEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CHHHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhCC
Confidence 4566677777777776 489999999999999999988764
No 404
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.55 E-value=0.062 Score=41.23 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=18.8
Q ss_pred eEEEeCCCCccHHHHHHHHHH
Q 020071 48 NLILAGPPGTGKTTSILALAH 68 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~ 68 (331)
.+++.|++|+|||+++..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 379999999999999999864
No 405
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.54 E-value=0.069 Score=41.31 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.9
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||+++..+...-
T Consensus 17 i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998653
No 406
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.53 E-value=0.023 Score=50.70 Aligned_cols=23 Identities=30% Similarity=0.613 Sum_probs=21.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
++|.||+|+|||+++..+++.+.
T Consensus 5 i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHT
T ss_pred EEEECcchhhHHHHHHHHHHHCC
Confidence 69999999999999999999983
No 407
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=94.53 E-value=0.27 Score=45.69 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHh
Q 020071 33 AVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 33 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 70 (331)
....+...+. +. ++++.+|+|+|||..+...+...
T Consensus 9 Q~~~i~~~~~-~~--~~l~~~~tGsGKT~~~~~~~~~~ 43 (555)
T 3tbk_A 9 QLELALPAKK-GK--NTIICAPTGCGKTFVSLLICEHH 43 (555)
T ss_dssp HHHHHHHHHT-TC--CEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CC--CEEEEeCCCChHHHHHHHHHHHH
Confidence 3444444443 32 59999999999998766665443
No 408
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.51 E-value=0.093 Score=42.05 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=20.4
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+++.|++|+|||+++..+...-
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998653
No 409
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=94.49 E-value=0.22 Score=48.21 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=16.8
Q ss_pred eEEEeCCCCccHHHHHHHHH
Q 020071 48 NLILAGPPGTGKTTSILALA 67 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~ 67 (331)
+++++||+|+|||+.+....
T Consensus 48 ~~lv~apTGsGKT~~~~l~i 67 (715)
T 2va8_A 48 RLLLTSPTGSGKTLIAEMGI 67 (715)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEcCCCCcHHHHHHHHH
Confidence 59999999999999884443
No 410
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.48 E-value=0.01 Score=49.24 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=18.8
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 020071 49 LILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~ 69 (331)
++++|+||+|||+++..++..
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 699999999999999988754
No 411
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.48 E-value=0.063 Score=46.23 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGP 73 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~ 73 (331)
+.|.||+|+||||+++.++..+...
T Consensus 105 i~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhc
Confidence 6899999999999999999987543
No 412
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=94.47 E-value=0.12 Score=51.96 Aligned_cols=41 Identities=12% Similarity=0.222 Sum_probs=24.9
Q ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHHHhcCCcEEEEeeCC
Q 020071 110 GKHKVVVLDEADSMTAGA-QQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 110 ~~~~vviide~d~l~~~~-~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
.+..+|||||+|.+.... ...+.+++...+.++.+|+.|..
T Consensus 146 ~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT 187 (997)
T 4a4z_A 146 RDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSAT 187 (997)
T ss_dssp GGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECC
T ss_pred cCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEcCC
Confidence 457899999999885421 12233444444556666665443
No 413
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=94.47 E-value=0.16 Score=48.40 Aligned_cols=40 Identities=13% Similarity=0.013 Sum_probs=23.2
Q ss_pred CCCceEEEEeCCCCCCHHHHHHHHHHHHHh-cCCcEEEEee
Q 020071 109 PGKHKVVVLDEADSMTAGAQQALRRTMEIY-SNSTRFALAC 148 (331)
Q Consensus 109 ~~~~~vviide~d~l~~~~~~~Ll~~le~~-~~~~~~I~~~ 148 (331)
.....+|||||+|.+.......+..+++.. ..+..+|+.+
T Consensus 275 l~~~~~iViDEah~~~~~~~~~~~~i~~~l~~~~~q~il~S 315 (618)
T 2whx_A 275 VPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMT 315 (618)
T ss_dssp CCCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred ccCCeEEEEECCCCCCccHHHHHHHHHHHhcccCccEEEEE
Confidence 356789999999999654433333333322 1345555443
No 414
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=94.46 E-value=0.25 Score=46.03 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHh
Q 020071 33 AVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 33 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 70 (331)
....+...+. +. ++++.+|+|+|||..+...+...
T Consensus 12 Q~~~i~~~~~-~~--~~l~~~~tGsGKT~~~~~~~~~~ 46 (556)
T 4a2p_A 12 QIELAQPAIN-GK--NALICAPTGSGKTFVSILICEHH 46 (556)
T ss_dssp HHHHHHHHHT-TC--CEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CC--CEEEEcCCCChHHHHHHHHHHHH
Confidence 3444444443 32 49999999999998766665443
No 415
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=94.45 E-value=0.2 Score=41.47 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHH
Q 020071 31 LDAVARLGIIARDGNMPNLILAGPPGTGKTTSIL 64 (331)
Q Consensus 31 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~ 64 (331)
+.....+...+. ++ ++++.+|+|+|||..+.
T Consensus 48 ~~Q~~~i~~i~~-~~--~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 48 PIQKNAIPAILE-HR--DIMACAQTGSGKTAAFL 78 (253)
T ss_dssp HHHHHHHHHHHT-TC--CEEEECCTTSSHHHHHH
T ss_pred HHHHHHHHHHhC-CC--CEEEECCCCChHHHHHH
Confidence 333344444443 32 59999999999997544
No 416
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.42 E-value=0.21 Score=47.60 Aligned_cols=92 Identities=16% Similarity=0.119 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecCCCCChHhHHHHHHHHHhcccC-----
Q 020071 32 DAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNASDDRGIDVVRNKIKMFAQKKVT----- 106 (331)
Q Consensus 32 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~----- 106 (331)
+..+.+...+.... ...+++|+.|.|||+++..++..+.. . +.+.++.......+.+..... ..+.
T Consensus 179 dQ~~al~~~~~~~~-~~~vlta~RGRGKSa~lG~~~a~~~~-----~-~~vtAP~~~a~~~l~~~~~~~--i~~~~Pd~~ 249 (671)
T 2zpa_A 179 EQQQLLKQLMTMPP-GVAAVTAARGRGKSALAGQLISRIAG-----R-AIVTAPAKASTDVLAQFAGEK--FRFIAPDAL 249 (671)
T ss_dssp HHHHHHHHHTTCCS-EEEEEEECTTSSHHHHHHHHHHHSSS-----C-EEEECSSCCSCHHHHHHHGGG--CCBCCHHHH
T ss_pred HHHHHHHHHHHhhh-CeEEEecCCCCCHHHHHHHHHHHHHh-----C-cEEECCCHHHHHHHHHHhhCC--eEEeCchhh
Confidence 33344444443221 34799999999999999999998842 2 344555554555544433211 0000
Q ss_pred -CCCCCceEEEEeCCCCCCHHHHHHHH
Q 020071 107 -LPPGKHKVVVLDEADSMTAGAQQALR 132 (331)
Q Consensus 107 -~~~~~~~vviide~d~l~~~~~~~Ll 132 (331)
.......++||||+-.++......|+
T Consensus 250 ~~~~~~~dlliVDEAAaIp~pll~~ll 276 (671)
T 2zpa_A 250 LASDEQADWLVVDEAAAIPAPLLHQLV 276 (671)
T ss_dssp HHSCCCCSEEEEETGGGSCHHHHHHHH
T ss_pred hhCcccCCEEEEEchhcCCHHHHHHHH
Confidence 01234679999999999876444443
No 417
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.41 E-value=0.037 Score=44.58 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=20.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||+++..+...-
T Consensus 12 i~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 12 CVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998754
No 418
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.39 E-value=0.23 Score=48.01 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=25.9
Q ss_pred CCceEEEEeCCCCCC----HHHHHHHHHHHHHhcCCcEEEEeeCC
Q 020071 110 GKHKVVVLDEADSMT----AGAQQALRRTMEIYSNSTRFALACNV 150 (331)
Q Consensus 110 ~~~~vviide~d~l~----~~~~~~Ll~~le~~~~~~~~I~~~~~ 150 (331)
.+.++|||||+|.+. ....+.++..+....++.++|+.+..
T Consensus 137 ~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSAT 181 (702)
T 2p6r_A 137 KAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSAT 181 (702)
T ss_dssp GGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECC
T ss_pred hhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCC
Confidence 356899999999864 23445555555544456666665543
No 419
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.36 E-value=0.022 Score=44.42 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=19.8
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 020071 49 LILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~ 69 (331)
++|.|++|+|||++|..+.+.
T Consensus 19 vli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 19 VLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHc
Confidence 899999999999999999884
No 420
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=94.34 E-value=0.1 Score=52.51 Aligned_cols=56 Identities=21% Similarity=0.182 Sum_probs=37.4
Q ss_pred cCHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEeecC
Q 020071 29 GNLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYREAVMELNAS 85 (331)
Q Consensus 29 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 85 (331)
-.+.....+...+... ...+++.++.|+|||..+-.++..+...+....++.+.+.
T Consensus 154 LrpyQ~eav~~~l~~~-~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~ 209 (968)
T 3dmq_A 154 LIPHQLNIAHDVGRRH-APRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE 209 (968)
T ss_dssp CCHHHHHHHHHHHHSS-SCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT
T ss_pred CcHHHHHHHHHHHHhc-CCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH
Confidence 3566666666666654 3358999999999999988888776544333344444443
No 421
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.33 E-value=0.037 Score=47.60 Aligned_cols=22 Identities=45% Similarity=0.667 Sum_probs=21.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.|+||+|+||||+++.++..+
T Consensus 129 vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 129 LAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhhhc
Confidence 7999999999999999999987
No 422
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.30 E-value=0.043 Score=52.35 Aligned_cols=39 Identities=31% Similarity=0.514 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhc
Q 020071 30 NLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
.+.....+...+.+ +..++.||||+|||+++..+...+.
T Consensus 182 n~~Q~~av~~~l~~---~~~li~GppGTGKT~~~~~~i~~l~ 220 (624)
T 2gk6_A 182 NHSQVYAVKTVLQR---PLSLIQGPPGTGKTVTSATIVYHLA 220 (624)
T ss_dssp CHHHHHHHHHHHTC---SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcC---CCeEEECCCCCCHHHHHHHHHHHHH
Confidence 56666666666542 3479999999999999888877764
No 423
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.29 E-value=0.055 Score=43.21 Aligned_cols=22 Identities=23% Similarity=0.524 Sum_probs=20.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||+++..+...-
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 8999999999999999998754
No 424
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.28 E-value=0.028 Score=46.72 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=20.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+-|.||.|+||||+++.++..+
T Consensus 28 igI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6999999999999999999876
No 425
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.25 E-value=0.031 Score=45.00 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=25.3
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCCCCCceEE
Q 020071 48 NLILAGPPGTGKTTSILALAHELLGPNYREAVME 81 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 81 (331)
.+.|.|+.|+|||++++.+++.+ +.+++.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~l-----g~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHY-----NIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT-----TCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHh-----CcCEEC
Confidence 37999999999999999999999 666663
No 426
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.24 E-value=0.035 Score=45.64 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=21.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+-|.|+||+||||.++.+++.+
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999988
No 427
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.23 E-value=0.076 Score=41.82 Aligned_cols=22 Identities=23% Similarity=0.637 Sum_probs=20.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||+++..+...-
T Consensus 18 i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 18 ILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998764
No 428
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.22 E-value=0.1 Score=41.22 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=20.5
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+++.|++|+|||+++..+...-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 48999999999999999998753
No 429
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.19 E-value=0.051 Score=43.36 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=3.8
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 020071 49 LILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~ 69 (331)
+++.|++|+|||+++..+...
T Consensus 23 i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 23 VAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEC-----------------
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999998765
No 430
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.16 E-value=0.047 Score=42.65 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=8.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+++.|++|+|||+++..+...-
T Consensus 11 i~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 11 LLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEECCCCC-------------
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 8999999999999999987643
No 431
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=94.15 E-value=0.22 Score=45.38 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=15.7
Q ss_pred eEEEeCCCCccHHHH-HHHHHH
Q 020071 48 NLILAGPPGTGKTTS-ILALAH 68 (331)
Q Consensus 48 ~~ll~G~~G~GKt~l-a~~l~~ 68 (331)
.+++.||+|+|||.. +..+..
T Consensus 21 ~~lv~a~TGsGKT~~~~~~~l~ 42 (451)
T 2jlq_A 21 LTIMDLHPGAGKTKRILPSIVR 42 (451)
T ss_dssp EEEECCCTTSSCCTTHHHHHHH
T ss_pred eEEEECCCCCCHhhHHHHHHHH
Confidence 369999999999983 444443
No 432
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.15 E-value=0.017 Score=47.52 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=14.3
Q ss_pred EEEeCCCCccHHHHHHHHH-HHh
Q 020071 49 LILAGPPGTGKTTSILALA-HEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~-~~l 70 (331)
+.|.||+|+||||+++.++ ..+
T Consensus 30 i~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEECSCC----CHHHHHHC---
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 6999999999999999999 765
No 433
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.14 E-value=0.097 Score=42.59 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=21.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+.|.|++|+||||.++.+++.+.
T Consensus 8 i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 8 ILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 79999999999999999999984
No 434
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.09 E-value=0.046 Score=56.81 Aligned_cols=60 Identities=12% Similarity=0.270 Sum_probs=38.1
Q ss_pred CceEEEEeCCC-CCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCCh----hhhcccceeeecCC
Q 020071 111 KHKVVVLDEAD-SMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIE----PIQSRCAIVRFSRL 170 (331)
Q Consensus 111 ~~~vviide~d-~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~----~l~sr~~~i~~~~~ 170 (331)
+.+++++||+- .+..+....+.+.+++...++.+|+++.+.+-+.. -..+.+.++++..+
T Consensus 1235 ~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth 1299 (1321)
T 4f4c_A 1235 NPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTH 1299 (1321)
T ss_dssp CCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCH
Confidence 47899999984 44556667778888876666777777776443211 01233555666654
No 435
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.09 E-value=0.038 Score=43.69 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=20.9
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhc
Q 020071 48 NLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
.+++.|++|+|||+++..+...-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~~ 50 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNEF 50 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 389999999999999999987543
No 436
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.06 E-value=0.1 Score=48.70 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcC
Q 020071 49 LILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
+++.||+|+|||++++.++.....
T Consensus 284 ~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 284 ILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHh
Confidence 699999999999999999987654
No 437
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=94.05 E-value=0.37 Score=45.07 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=23.8
Q ss_pred CCceEEEEeCCCCCC----HHHHHHHHHHHHHhc----CCcEEEEee
Q 020071 110 GKHKVVVLDEADSMT----AGAQQALRRTMEIYS----NSTRFALAC 148 (331)
Q Consensus 110 ~~~~vviide~d~l~----~~~~~~Ll~~le~~~----~~~~~I~~~ 148 (331)
..-.+|||||+|.+. ......+...+.... .++.+++.|
T Consensus 225 ~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~S 271 (563)
T 3i5x_A 225 RFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFS 271 (563)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEE
T ss_pred ccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEE
Confidence 456899999999874 344555655554322 244555544
No 438
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.05 E-value=0.027 Score=47.80 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
++|+||+|+|||+++..++..+.
T Consensus 33 ~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 33 GALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHh
Confidence 69999999999999999997654
No 439
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.04 E-value=0.21 Score=46.56 Aligned_cols=42 Identities=5% Similarity=0.101 Sum_probs=32.6
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC
Q 020071 110 GKHKVVVLDEA-DSMTAGAQQALRRTMEIYSNSTRFALACNVS 151 (331)
Q Consensus 110 ~~~~vviide~-d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~ 151 (331)
.+++++++||. ..|.......+.+++.+...+..+|+++.+.
T Consensus 155 ~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl 197 (538)
T 3ozx_A 155 READVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDL 197 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeCh
Confidence 35789999996 5778888888888888765566677777654
No 440
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.04 E-value=0.073 Score=46.59 Aligned_cols=23 Identities=43% Similarity=0.603 Sum_probs=21.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+.|.|++|+||||+.+.++..+.
T Consensus 58 v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 58 VGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhhh
Confidence 79999999999999999998764
No 441
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.97 E-value=0.026 Score=46.44 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=18.6
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+.|.|++|+||||.++.+++.+.
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 79999999999999999999884
No 442
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=93.97 E-value=0.36 Score=48.71 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=19.8
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhc
Q 020071 48 NLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+.+++.+.|+|||.++-.+++.+.
T Consensus 302 ~gli~~~TGSGKT~t~~~l~~ll~ 325 (1038)
T 2w00_A 302 GGYIWHTTGSGKTLTSFKAARLAT 325 (1038)
T ss_dssp SEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEecCCCCHHHHHHHHHHHHH
Confidence 489999999999999877776553
No 443
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.94 E-value=0.077 Score=46.51 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=21.3
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhc
Q 020071 48 NLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
.+.+.|++|+||||++..++..+.
T Consensus 58 ~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 58 RLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 479999999999999999988764
No 444
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.94 E-value=0.036 Score=47.96 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcC
Q 020071 49 LILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
+.|.||+|+||||+++.++..+..
T Consensus 93 vgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEECCCCchHHHHHHHHHhhccc
Confidence 699999999999999999998753
No 445
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.93 E-value=0.081 Score=42.28 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=20.4
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+++.|++|+|||+++..+...-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999998754
No 446
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=93.88 E-value=0.32 Score=46.49 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=26.8
Q ss_pred CCCceEEEEeCCCCCCHHHHHHHHHHHHHhcC---CcEEEEeeCC
Q 020071 109 PGKHKVVVLDEADSMTAGAQQALRRTMEIYSN---STRFALACNV 150 (331)
Q Consensus 109 ~~~~~vviide~d~l~~~~~~~Ll~~le~~~~---~~~~I~~~~~ 150 (331)
..+.+++||||++.+.......+..+++..+. ...++++++.
T Consensus 316 l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~ 360 (666)
T 3o8b_A 316 GGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATP 360 (666)
T ss_dssp TTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSC
T ss_pred cCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCC
Confidence 34578999999998887665556666664432 2234445543
No 447
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.88 E-value=0.19 Score=52.26 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=21.5
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhc
Q 020071 48 NLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
.+.++||+|+||||+++.+...+.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSC
T ss_pred EEEEEecCCCcHHHHHHHhccccc
Confidence 379999999999999999988764
No 448
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.88 E-value=0.3 Score=47.58 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=20.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.|.||.|+||||+.+.++...
T Consensus 579 ~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 579 VLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp EEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHhhh
Confidence 6999999999999999998754
No 449
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.87 E-value=0.056 Score=43.35 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=22.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPN 74 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~ 74 (331)
+.|.|+.|+||||.++.+++.+...+
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g 28 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 47899999999999999999986553
No 450
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.76 E-value=0.032 Score=46.22 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=21.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+.|.|++|+||||+++.+++.+.
T Consensus 5 i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999873
No 451
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.75 E-value=0.1 Score=45.88 Aligned_cols=25 Identities=40% Similarity=0.557 Sum_probs=21.8
Q ss_pred CeEEEeCCCCccHHHHHHHHHHHhc
Q 020071 47 PNLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 47 ~~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+.+.|.|+||+||||+...+...+.
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 3479999999999999999998653
No 452
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.74 E-value=0.093 Score=41.83 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=19.2
Q ss_pred eEEEeCCCCccHHHHHHHHHHH
Q 020071 48 NLILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~ 69 (331)
.+++.|++|+|||+++..+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3899999999999999998754
No 453
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.72 E-value=0.049 Score=47.03 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=21.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+.|.||+|+||||+++.++..+.
T Consensus 83 igI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 69999999999999999999774
No 454
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.72 E-value=0.077 Score=52.05 Aligned_cols=40 Identities=30% Similarity=0.493 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhcC
Q 020071 30 NLDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
.+.....+...+.+ +..++.||||||||+++..++..+..
T Consensus 358 n~~Q~~Av~~~l~~---~~~lI~GppGTGKT~ti~~~i~~l~~ 397 (800)
T 2wjy_A 358 NHSQVYAVKTVLQR---PLSLIQGPPGTGKTVTSATIVYHLAR 397 (800)
T ss_dssp CHHHHHHHHHHHTS---SEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhccC---CeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45566666665542 34799999999999998888877653
No 455
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.71 E-value=0.059 Score=47.66 Aligned_cols=35 Identities=31% Similarity=0.393 Sum_probs=28.0
Q ss_pred HHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhc
Q 020071 35 ARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 35 ~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
..+.-.+..|. .++|.||+|+||||+++.++..+.
T Consensus 166 ~~l~~~i~~G~--~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 166 SFLRRAVQLER--VIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHHHHHHTTC--CEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHHHHHHhcCC--EEEEECCCCCCHHHHHHHHHhcCC
Confidence 44555566665 489999999999999999998764
No 456
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.68 E-value=0.059 Score=50.46 Aligned_cols=43 Identities=23% Similarity=0.143 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHc-CCCCe-EEEeCCCCccHHHHHHHHHHHhcC
Q 020071 30 NLDAVARLGIIARD-GNMPN-LILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 30 ~~~~~~~l~~~l~~-~~~~~-~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
.+++...+++.... +..+. ++|+|++|+||||+++.+++.+..
T Consensus 354 r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 354 RPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 45555566665521 22223 799999999999999999998753
No 457
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.64 E-value=0.12 Score=41.37 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=19.3
Q ss_pred eEEEeCCCCccHHHHHHHHHHH
Q 020071 48 NLILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~ 69 (331)
.+.|.|++|+||||+.+.+...
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999988754
No 458
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.64 E-value=0.036 Score=47.48 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=21.2
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
++|.||+|+|||++++.++..+.
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 69999999999999999998764
No 459
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.61 E-value=0.039 Score=43.35 Aligned_cols=23 Identities=26% Similarity=0.262 Sum_probs=21.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
.+|+||.|+|||+++.++.-.+.
T Consensus 29 ~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 59999999999999999998774
No 460
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=93.59 E-value=0.1 Score=47.44 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=17.0
Q ss_pred eEEEeCCCCccHHHHH-HHHHHH
Q 020071 48 NLILAGPPGTGKTTSI-LALAHE 69 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la-~~l~~~ 69 (331)
++++.||+|+|||..+ ..+.+.
T Consensus 10 ~vlv~a~TGSGKT~~~l~~~l~~ 32 (440)
T 1yks_A 10 TTVLDFHPGAGKTRRFLPQILAE 32 (440)
T ss_dssp EEEECCCTTSSTTTTHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 5899999999999864 444443
No 461
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.58 E-value=0.043 Score=48.75 Aligned_cols=23 Identities=30% Similarity=0.712 Sum_probs=21.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+++.||+|+||||+++.++..+.
T Consensus 139 i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 139 ILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhhcC
Confidence 79999999999999999998774
No 462
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=93.57 E-value=0.28 Score=47.09 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=17.0
Q ss_pred eEEEeCCCCccHHHHH-HHHHHH
Q 020071 48 NLILAGPPGTGKTTSI-LALAHE 69 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la-~~l~~~ 69 (331)
++++.||+|+|||..+ ..+.+.
T Consensus 243 dvlv~apTGSGKTl~~ll~il~~ 265 (673)
T 2wv9_A 243 LTVLDLHPGAGKTRRILPQIIKD 265 (673)
T ss_dssp EEEECCCTTTTTTTTHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHH
Confidence 5899999999999863 444444
No 463
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.57 E-value=0.043 Score=43.77 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=20.3
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.+.|++|+|||++.+.+....
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7999999999999999998864
No 464
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.53 E-value=0.047 Score=46.97 Aligned_cols=24 Identities=46% Similarity=0.663 Sum_probs=21.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcC
Q 020071 49 LILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
+.|.||.|+||||+++.++..+..
T Consensus 103 i~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 103 IMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 699999999999999999998753
No 465
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=93.52 E-value=0.46 Score=44.71 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=23.8
Q ss_pred CCceEEEEeCCCCCC----HHHHHHHHHHHHHhc----CCcEEEEee
Q 020071 110 GKHKVVVLDEADSMT----AGAQQALRRTMEIYS----NSTRFALAC 148 (331)
Q Consensus 110 ~~~~vviide~d~l~----~~~~~~Ll~~le~~~----~~~~~I~~~ 148 (331)
..-.+|||||+|.+. ......++..+.... .++.+++.|
T Consensus 174 ~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~S 220 (579)
T 3sqw_A 174 RFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFS 220 (579)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEE
T ss_pred ccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEe
Confidence 456799999999874 344555666655432 244555443
No 466
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.49 E-value=0.092 Score=43.80 Aligned_cols=34 Identities=32% Similarity=0.521 Sum_probs=26.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEEee
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVMELN 83 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 83 (331)
+++.|.+|+||||++..++..+. .+....++..+
T Consensus 17 ~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D 50 (262)
T 1yrb_A 17 VVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLD 50 (262)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 69999999999999999999886 54444344433
No 467
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.46 E-value=0.33 Score=48.38 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=18.1
Q ss_pred EEEeCCCCccHHHHHHHHHH
Q 020071 49 LILAGPPGTGKTTSILALAH 68 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~ 68 (331)
++|.||.|+||||+.+.++-
T Consensus 665 ~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 665 HIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 69999999999999999843
No 468
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.46 E-value=0.064 Score=40.86 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcC
Q 020071 49 LILAGPPGTGKTTSILALAHELLG 72 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~ 72 (331)
.+|+||.|+|||++..++.-.+.+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 599999999999999999877643
No 469
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.46 E-value=0.38 Score=47.80 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=18.3
Q ss_pred EEEeCCCCccHHHHHHHHHH
Q 020071 49 LILAGPPGTGKTTSILALAH 68 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~ 68 (331)
+.|.||.|+||||+.+.++.
T Consensus 676 ~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 676 MIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EEEESCCCHHHHHHHHHHHH
T ss_pred EEEECCCCCchHHHHHHHHH
Confidence 69999999999999998864
No 470
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.45 E-value=1.1 Score=38.36 Aligned_cols=133 Identities=14% Similarity=0.132 Sum_probs=65.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCC---C---C-----------CceEEeecCCCCC-hHhHHHHHHHHHhcccCCCCC
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPN---Y---R-----------EAVMELNASDDRG-IDVVRNKIKMFAQKKVTLPPG 110 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~---~---~-----------~~~~~~~~~~~~~-~~~i~~~i~~~~~~~~~~~~~ 110 (331)
+.+.|.+|+||||+...+...-.... . . ..+.-++.+.... ...+.+.+.......+ ...
T Consensus 10 V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l--~~a 87 (301)
T 1wf3_A 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL--ADV 87 (301)
T ss_dssp EEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT--SSC
T ss_pred EEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH--hcC
Confidence 79999999999999999986532210 0 0 0111122222111 1122222222222211 134
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCCCh------hhhcc---cceeeecCCCHHHHHHHHHH
Q 020071 111 KHKVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKIIE------PIQSR---CAIVRFSRLSDEEILSRLMV 181 (331)
Q Consensus 111 ~~~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l~~------~l~sr---~~~i~~~~~~~~~~~~~l~~ 181 (331)
+.-++++|=-+.++.. ...+++.+.....+..+|++.|..+...+ .+... ..++.+...+...+...+..
T Consensus 88 d~il~VvD~~~~~~~~-~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~ 166 (301)
T 1wf3_A 88 NAVVWVVDLRHPPTPE-DELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKAD 166 (301)
T ss_dssp SEEEEEEETTSCCCHH-HHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEEEECCCCCChH-HHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHH
Confidence 5567777755666544 34555566554335667777776543321 11111 12344445555555555555
Q ss_pred HHH
Q 020071 182 VVQ 184 (331)
Q Consensus 182 ~~~ 184 (331)
...
T Consensus 167 l~~ 169 (301)
T 1wf3_A 167 LLA 169 (301)
T ss_dssp HHT
T ss_pred HHH
Confidence 443
No 471
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.41 E-value=0.04 Score=43.45 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=19.2
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 020071 49 LILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~ 69 (331)
++++|++|+|||++|..++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 589999999999999999865
No 472
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.40 E-value=0.046 Score=45.38 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.1
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhc
Q 020071 48 NLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
.+.+.||.|+||||+.+.++..+.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999987653
No 473
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.39 E-value=0.041 Score=43.65 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=20.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+.+.|++|+|||++++.+.....
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 79999999999999999998653
No 474
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.39 E-value=0.037 Score=45.77 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.1
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.|.||.|+||||+.+.++..+
T Consensus 34 ~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 34 VSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999998765
No 475
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=93.38 E-value=0.51 Score=46.32 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHh
Q 020071 31 LDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 31 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.....+...+. +. ++++.+|.|+|||..+...+...
T Consensus 251 ~~Q~~~i~~~l~-~~--~~ll~~~TGsGKTl~~~~~i~~~ 287 (797)
T 4a2q_A 251 SYQIELAQPAIN-GK--NALICAPTGSGKTFVSILICEHH 287 (797)
T ss_dssp HHHHHHHHHHHT-TC--CEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CC--CEEEEeCCCChHHHHHHHHHHHH
Confidence 444444444443 32 59999999999998776665544
No 476
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.36 E-value=0.53 Score=40.41 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=19.1
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 020071 49 LILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~ 69 (331)
+++.|++|+|||++...+...
T Consensus 6 I~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 6 LLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEECCTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999997754
No 477
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.36 E-value=0.058 Score=50.81 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=21.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
++|.|.+|+||||+++.+++.+.
T Consensus 399 I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 399 IFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEeecCCCCCHHHHHHHHHHHhc
Confidence 79999999999999999999984
No 478
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.32 E-value=0.029 Score=47.99 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=17.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.+.|++|+||||+++.+++.+
T Consensus 8 IgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 8 ISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp EEEESCC---CCTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999977
No 479
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.31 E-value=0.31 Score=45.96 Aligned_cols=42 Identities=14% Similarity=0.309 Sum_probs=31.0
Q ss_pred CceEEEEeCC-CCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCC
Q 020071 111 KHKVVVLDEA-DSMTAGAQQALRRTMEIYSNSTRFALACNVSS 152 (331)
Q Consensus 111 ~~~vviide~-d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~ 152 (331)
+++++++||+ ..+.......+.+.+.+...+..+|+++.+.+
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 540 (582)
T 3b60_A 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 540 (582)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHH
Confidence 5789999997 46677777888888876554566777777654
No 480
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=93.28 E-value=0.041 Score=44.71 Aligned_cols=20 Identities=45% Similarity=0.561 Sum_probs=17.9
Q ss_pred EEEeCCCCccHHHHHHHHHH
Q 020071 49 LILAGPPGTGKTTSILALAH 68 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~ 68 (331)
+++.|++|+|||+++..+..
T Consensus 18 i~v~G~~~~GKSsli~~~~~ 37 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLT 37 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 89999999999999999443
No 481
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=93.27 E-value=0.37 Score=43.59 Aligned_cols=16 Identities=31% Similarity=0.657 Sum_probs=14.1
Q ss_pred eEEEeCCCCccHHHHH
Q 020071 48 NLILAGPPGTGKTTSI 63 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la 63 (331)
++++.+|+|+|||...
T Consensus 95 d~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 95 DLMACAQTGSGKTAAF 110 (434)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred CEEEECCCCCCchHHH
Confidence 5999999999999843
No 482
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.26 E-value=0.02 Score=48.20 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=21.3
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.++|.|++|+||||+++.+++.+
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 37999999999999999999987
No 483
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.26 E-value=0.051 Score=51.49 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=21.7
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
++|.|.+|+||||+++.+++.+.
T Consensus 55 IvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 55 VWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 79999999999999999999884
No 484
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.19 E-value=0.068 Score=50.04 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+.|.|++|+||||+++.++..+.
T Consensus 372 I~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 372 VFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHHhhc
Confidence 79999999999999999999885
No 485
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=92.30 E-value=0.016 Score=46.48 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=19.4
Q ss_pred eEEEeCCCCccHHHHHHHHHHH
Q 020071 48 NLILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~ 69 (331)
.+++.|++|+|||+++..+...
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 4899999999999999888754
No 486
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.17 E-value=0.043 Score=43.14 Aligned_cols=20 Identities=40% Similarity=0.682 Sum_probs=18.8
Q ss_pred EEEeCCCCccHHHHHHHHHH
Q 020071 49 LILAGPPGTGKTTSILALAH 68 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~ 68 (331)
+++.|++|+|||++++.++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 89999999999999999876
No 487
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.16 E-value=0.063 Score=43.34 Aligned_cols=23 Identities=43% Similarity=0.762 Sum_probs=21.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+.|.|+.|+||||.++.+++.+.
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 68999999999999999999984
No 488
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=93.16 E-value=0.8 Score=45.83 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHHHHhc
Q 020071 31 LDAVARLGIIARDGNMPNLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 31 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+.....+...+. |. ++++.+|.|+|||..+...+....
T Consensus 251 ~~Q~~ai~~il~-g~--~~ll~a~TGsGKTl~~~~~i~~~l 288 (936)
T 4a2w_A 251 SYQIELAQPAIN-GK--NALICAPTGSGKTFVSILICEHHF 288 (936)
T ss_dssp HHHHHHHHHHHT-TC--CEEEECCTTSCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHc-CC--CEEEEeCCCchHHHHHHHHHHHHH
Confidence 334444444443 32 599999999999988777766553
No 489
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.13 E-value=0.043 Score=45.45 Aligned_cols=43 Identities=9% Similarity=0.085 Sum_probs=30.8
Q ss_pred CceEEEEeCC-CCCCHHHHHHHHHHHH---HhcCCcEEEEeeCCCCC
Q 020071 111 KHKVVVLDEA-DSMTAGAQQALRRTME---IYSNSTRFALACNVSSK 153 (331)
Q Consensus 111 ~~~vviide~-d~l~~~~~~~Ll~~le---~~~~~~~~I~~~~~~~~ 153 (331)
+++++++||. ..+.......+.+.+. ....+..+|+++.+...
T Consensus 145 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~ 191 (237)
T 2cbz_A 145 NADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSY 191 (237)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTT
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHH
Confidence 5789999996 5677888888888883 22335567777776554
No 490
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.12 E-value=0.072 Score=41.25 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.4
Q ss_pred CeEEEeCCCCccHHHHHHHHHHH
Q 020071 47 PNLILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 47 ~~~ll~G~~G~GKt~la~~l~~~ 69 (331)
+.+++.|++|+|||+++..+...
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999764
No 491
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=93.12 E-value=0.23 Score=45.56 Aligned_cols=105 Identities=14% Similarity=0.206 Sum_probs=46.8
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc--CCC---CCC----ceEEee-----cCCCCChHhHHHHHHHH--HhcccCCCCCCc
Q 020071 49 LILAGPPGTGKTTSILALAHELL--GPN---YRE----AVMELN-----ASDDRGIDVVRNKIKMF--AQKKVTLPPGKH 112 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~--~~~---~~~----~~~~~~-----~~~~~~~~~i~~~i~~~--~~~~~~~~~~~~ 112 (331)
+.|.|++|+|||++...+...-. ... ... ..+.++ -.|..|.....+.++.+ ..........+.
T Consensus 236 V~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~ 315 (476)
T 3gee_A 236 TVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADL 315 (476)
T ss_dssp EEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCSSCSE
T ss_pred EEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCE
Confidence 89999999999999999876521 000 000 111111 11222222222222221 111111224556
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCCC
Q 020071 113 KVVVLDEADSMTAGAQQALRRTMEIYSNSTRFALACNVSSKI 154 (331)
Q Consensus 113 ~vviide~d~l~~~~~~~Ll~~le~~~~~~~~I~~~~~~~~l 154 (331)
-++++|--+..+....+....+++... +..+|++.|.....
T Consensus 316 vl~VvD~s~~~s~~~~~~~~~~l~~l~-~~piIvV~NK~Dl~ 356 (476)
T 3gee_A 316 ILYLLDLGTERLDDELTEIRELKAAHP-AAKFLTVANKLDRA 356 (476)
T ss_dssp EEEEEETTTCSSGGGHHHHHHHHHHCT-TSEEEEEEECTTSC
T ss_pred EEEEEECCCCcchhhhHHHHHHHHhcC-CCCEEEEEECcCCC
Confidence 677777665555433334455555544 56777777765543
No 492
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.12 E-value=0.055 Score=41.64 Aligned_cols=21 Identities=43% Similarity=0.605 Sum_probs=19.3
Q ss_pred EEEeCCCCccHHHHHHHHHHH
Q 020071 49 LILAGPPGTGKTTSILALAHE 69 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~ 69 (331)
+.+.|++|+|||++.+.+...
T Consensus 6 v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999763
No 493
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.11 E-value=0.056 Score=41.72 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=19.6
Q ss_pred eEEEeCCCCccHHHHHHHHHHHh
Q 020071 48 NLILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l 70 (331)
.+++.|++|+|||+++..+...-
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 38999999999999999987543
No 494
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.09 E-value=0.056 Score=50.30 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=21.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+++.|.||+||||+++.+++.+.
T Consensus 38 IvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 38 IVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 69999999999999999999874
No 495
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.09 E-value=0.046 Score=44.51 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.5
Q ss_pred EEEeCCCCccHHHHHHHHHHHhc
Q 020071 49 LILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
+.|.||.|+||||+.+.++..+.
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 78999999999999999987653
No 496
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=93.07 E-value=0.15 Score=43.64 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=28.0
Q ss_pred HHHHHHcCCCCe-EEEeCCCCccHHHHHHHHHHHhcCC
Q 020071 37 LGIIARDGNMPN-LILAGPPGTGKTTSILALAHELLGP 73 (331)
Q Consensus 37 l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~ 73 (331)
++..+...+.+. ++|-|..|+||++.++.+...+...
T Consensus 76 lQ~~~~~~~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldpr 113 (304)
T 3czq_A 76 VQFWMQATGKRVMAVFEGRDAAGKGGAIHATTANMNPR 113 (304)
T ss_dssp HHHHHHHHCCCEEEEEEESTTSSHHHHHHHHHTTSCTT
T ss_pred HHHHHHHcCCCeEEEEeCCCCCCHHHHHHHHHHHhccc
Confidence 344444444455 6999999999999999999998543
No 497
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.06 E-value=0.054 Score=45.80 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.4
Q ss_pred eEEEeCCCCccHHHHHHHHHHHhc
Q 020071 48 NLILAGPPGTGKTTSILALAHELL 71 (331)
Q Consensus 48 ~~ll~G~~G~GKt~la~~l~~~l~ 71 (331)
.+.+.||+|+||||+.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 378999999999999999998764
No 498
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.03 E-value=0.038 Score=45.30 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.0
Q ss_pred EEEeCCCCccHHHHHHHHHHHh
Q 020071 49 LILAGPPGTGKTTSILALAHEL 70 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l 70 (331)
+.|.||.|+||||+.+.++..+
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999998765
No 499
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=93.01 E-value=0.15 Score=54.32 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCCCeEEEeCCCCccHHHHHHHHH
Q 020071 34 VARLGIIARDGNMPNLILAGPPGTGKTTSILALA 67 (331)
Q Consensus 34 ~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~ 67 (331)
.+.+...+.++. ++++.+|+|+|||.++....
T Consensus 932 ~q~~~~l~~~~~--nvlv~APTGSGKTliaelai 963 (1724)
T 4f92_B 932 TQVFNTVYNSDD--NVFVGAPTGSGKTICAEFAI 963 (1724)
T ss_dssp HHHHHHHHSCCS--CEEEECCTTSCCHHHHHHHH
T ss_pred HHHHHHHhcCCC--cEEEEeCCCCCchHHHHHHH
Confidence 334444444444 69999999999999876544
No 500
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=92.97 E-value=0.067 Score=43.82 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=24.4
Q ss_pred EEEeCCCCccHHHHHHHHHHHhcCCCCCCceEE
Q 020071 49 LILAGPPGTGKTTSILALAHELLGPNYREAVME 81 (331)
Q Consensus 49 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 81 (331)
+.+.|++|+|||++++.+++.+ +.+++.
T Consensus 17 I~i~g~~gsGk~~i~~~la~~l-----g~~~~d 44 (223)
T 3hdt_A 17 ITIEREYGSGGRIVGKKLAEEL-----GIHFYD 44 (223)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH-----TCEEEC
T ss_pred EEEeCCCCCCHHHHHHHHHHHc-----CCcEEc
Confidence 6999999999999999999999 555543
Done!