BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020073
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 256 bits (655), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 131/304 (43%), Positives = 194/304 (63%), Gaps = 3/304 (0%)
Query: 26 PLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXX 85
P++ + ++ + + F+L + Y + + FL A SI A++ + ++
Sbjct: 31 PMSTYLEQELDKRFKLFR-YWTQPAQRDFLALQAESIRAVVGNSNAGADAELIDALPKLE 89
Query: 86 XVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQG 145
V + S G++ + + +C +G+ V N + +DD AD A+GL++ V R+I D+++R+G
Sbjct: 90 IVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRG 149
Query: 146 LWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-VPYAFYSN 204
W K GD+ L +K GKRVGI+GLG IGL VA+R +AF C + Y SRSKKP Y +Y +
Sbjct: 150 AW-KFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNTNYTYYGS 208
Query: 205 VCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG 264
V ELA+NSD L++ C LT +T +INREV+ ALG +G+++N+GRG +DE E+V LV G
Sbjct: 209 VVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEG 268
Query: 265 EIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPL 324
+ GAGLDVFE EP VP++L L+NVVL PH T E + +L VGNLEA FS +PL
Sbjct: 269 RLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPL 328
Query: 325 LSPV 328
L+PV
Sbjct: 329 LTPV 332
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 177 bits (450), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/310 (33%), Positives = 165/310 (53%), Gaps = 10/310 (3%)
Query: 16 PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESS--LSLEQFLISHAHSIEAILCSGDSPV 73
P +L+++P P F + R++ + + Y+++ +LE L SI A+ G + +
Sbjct: 31 PDLLLVEPXXP---FVXDELQRNYSVHRLYQAADRPALEAAL----PSIRAVATGGGAGL 83
Query: 74 TXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWR 133
+ + G + + + RRR I V + +DD AD + L + V R
Sbjct: 84 SNEWXEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLR 143
Query: 134 KISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRS 193
++ DR +R+G W+ PLG GKR+G++GLG IG +A R +AFG +V Y +RS
Sbjct: 144 RVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSVRYWNRS 203
Query: 194 K-KPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVI 252
V + + + +LA +SD L +C A + T+ +++ ++ ALG EGI+VNV RG V+
Sbjct: 204 TLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVV 263
Query: 253 DENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAV 312
DE+ ++ L G IAGAGLDVF NEP + E N VL PH+ T E +L +
Sbjct: 264 DEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLXPHQGSATVETRXAXGKLVL 323
Query: 313 GNLEALFSNQ 322
NL A F+ +
Sbjct: 324 ANLAAHFAGE 333
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 136/263 (51%), Gaps = 12/263 (4%)
Query: 63 EAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAAD 122
+ I+ S + +T + SAG ++I + E +RGI V + S+ A+
Sbjct: 44 DGIIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAE 103
Query: 123 AAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSK----LGGKRVGIVGLGNIGLQVAK 178
VGL+I++ RKI AD+F+R+G W G K L GK+VGI+G+G IG +A+
Sbjct: 104 FTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIAR 163
Query: 179 RLQAFGCNVLYNSRSKK----PVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234
RL FG + Y SR +K A Y ++ EL SD +I+ LT T +IN E +
Sbjct: 164 RLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERV 223
Query: 235 LALGKEG-IIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELD-NVVL 292
L EG +VN+GRGA++DE + + +G++ G DVFE EP EL + + VL
Sbjct: 224 KKL--EGKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVL 281
Query: 293 QPHRAVFTSECFVDLCELAVGNL 315
PH A E D+ AV NL
Sbjct: 282 TPHYAGLALEAQEDVGFRAVENL 304
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 138 bits (347), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 145/280 (51%), Gaps = 16/280 (5%)
Query: 36 SRSFQLLKAYESSLSLEQF-----LISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTA 90
++ Q+LK + E++ L+ +EAI+ VT + A
Sbjct: 14 EKAIQVLKDAGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRRVIESAPKLKVIARA 73
Query: 91 SAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKI 150
G+++I + + +GI V NA + S A+ AVGL+ V RKI+ ADR +R+G+W+K
Sbjct: 74 GVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAK- 132
Query: 151 GDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY-----NSRSKKPVPYAFYSNV 205
+G +L GK +GI+G G IG QVAK A G N+L N K V F ++
Sbjct: 133 -KEAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERAKEVNGKFV-DL 190
Query: 206 CELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGE 265
L SD + I L + T +IN E + + K I++N RG V+D N +V+ L G
Sbjct: 191 ETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGW 250
Query: 266 IAGAGLDVFENEPYVPKE--LLELDNVVLQPHRAVFTSEC 303
IAGAGLDVFE EP +PK+ L + DNVVL PH T E
Sbjct: 251 IAGAGLDVFEEEP-LPKDHPLTKFDNVVLTPHIGASTVEA 289
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/312 (32%), Positives = 155/312 (49%), Gaps = 12/312 (3%)
Query: 16 PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTX 75
P+V + + P + G K + F++ + + L+ ++A++ +
Sbjct: 3 PKVFITREIPEV---GIKMLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDK 59
Query: 76 XXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKI 135
V + G ++I + E +RGI V N + +D AD A LL+ R +
Sbjct: 60 EVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHV 119
Query: 136 SSADRFLRQGLWSKIG-----DYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYN 190
DRF+R G W K G + LG + GK +GI+GLG IG +AKR + F +LY
Sbjct: 120 VKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYY 179
Query: 191 SRSKKPVPY----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNV 246
SR++K A + + +L SD +++ LT +T +IN E + + K I++N+
Sbjct: 180 SRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINI 239
Query: 247 GRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVD 306
RG V+D N +V+ L G IAGAGLDVFE EPY +EL +LDNVVL PH +
Sbjct: 240 ARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAREG 299
Query: 307 LCELAVGNLEAL 318
+ EL NL A
Sbjct: 300 MAELVAKNLIAF 311
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 134 bits (336), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 128/247 (51%), Gaps = 7/247 (2%)
Query: 87 VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL 146
+ T S G++H+ + E ++RGI V + +D A+ AV LL+ R++ A ++ G
Sbjct: 80 ISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGG 139
Query: 147 WSKIGDYPL-GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCN-VLYNSRSKKPVPYAFYS- 203
W+ L G L VGI+GLG IG +A+RL+ FG LY R +P A +
Sbjct: 140 WTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQA 199
Query: 204 ---NVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRC 260
+ ELAA SD +++ C+LT T + N++ + + + +N+ RG V++++++ +
Sbjct: 200 EFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQA 259
Query: 261 LVRGEIAGAGLDVFENEPYVPKE-LLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALF 319
L G+IA AGLDV EP LL L N V+ PH T + LA NL A
Sbjct: 260 LASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGL 319
Query: 320 SNQPLLS 326
+P+ S
Sbjct: 320 RGEPMPS 326
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 147/289 (50%), Gaps = 12/289 (4%)
Query: 16 PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTX 75
P+V + + P + G K + F++ + + L+ ++A++ +
Sbjct: 3 PKVFITREIPEV---GIKXLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTXLSERIDK 59
Query: 76 XXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKI 135
V + G ++I + E +RGI V N + +D AD A LL+ R +
Sbjct: 60 EVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHV 119
Query: 136 SSADRFLRQGLWSKIG-----DYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYN 190
DRF+R G W K G + LG + GK +GI+GLG IG +AKR + F +LY
Sbjct: 120 VKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNXRILYY 179
Query: 191 SRSKKPVPY----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNV 246
SR++K A + + +L SD +++ LT +T +IN E + K I++N+
Sbjct: 180 SRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAILINI 239
Query: 247 GRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPH 295
RG V+D N +V+ L G IAGAGLDVFE EPY +EL +LDNVVL PH
Sbjct: 240 ARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPH 288
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|B Chain B, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|C Chain C, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|D Chain D, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2Q50|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Length = 328
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 124/244 (50%), Gaps = 7/244 (2%)
Query: 87 VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL 146
+ T S G++H+ + E ++RGI V + +D A+ AV LL+ R++ A ++ G
Sbjct: 78 ISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGG 137
Query: 147 WSKIGDYPL-GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCN-VLYNSRSKKPVPYAFYS- 203
W+ L G L VGI+GLG IG +A+RL+ FG LY R +P A +
Sbjct: 138 WTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQA 197
Query: 204 ---NVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRC 260
+ ELAA SD +++ C+LT T + N++ + + +N+ RG V++++++ +
Sbjct: 198 EFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINISRGDVVNQDDLYQA 257
Query: 261 LVRGEIAGAGLDVFENEPYVPKE-LLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALF 319
L G+IA AGLDV EP LL L N V+ PH T LA NL A
Sbjct: 258 LASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTXSLLAANNLLAGL 317
Query: 320 SNQP 323
+P
Sbjct: 318 RGEP 321
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/240 (37%), Positives = 133/240 (55%), Gaps = 4/240 (1%)
Query: 91 SAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKI 150
S GV+H+ + R RGI V + + ++ AD + LL+ V R++ + R GLW
Sbjct: 73 SVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAW 132
Query: 151 -GDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELA 209
+ LG L G +G+VG+G IG VAKR AFG V+Y++R+ KP+PY F S + EL
Sbjct: 133 HPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLPYPFLS-LEELL 191
Query: 210 ANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGA 269
+D + + LT +T R++NRE + A+ + I++N RGA++D +V L RG + GA
Sbjct: 192 KEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEAL-RGHLFGA 250
Query: 270 GLDVFENEPYVP-KELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPV 328
GLDV + EP P L L N V+ PH + E+AV NL A+ + +PV
Sbjct: 251 GLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGREPPNPV 310
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 134/292 (45%), Gaps = 10/292 (3%)
Query: 35 ISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXX-XXXXVVTASAG 93
+ + F L E ++ + S AH E + + +T + T S G
Sbjct: 45 LRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATLSVG 104
Query: 94 VNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDY 153
+HI R GI V + + SD A+ A L+++ R+ ADR +R G W G
Sbjct: 105 YDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNACRRGYEADRXVRSGSWPGWGPT 164
Query: 154 PL-GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYA------FYSNVC 206
L G L G+R+GI G G IG +A R + FG + Y++R++ + +A ++ +
Sbjct: 165 QLLGXGLTGRRLGIFGXGRIGRAIATRARGFGLAIHYHNRTR--LSHALEEGAIYHDTLD 222
Query: 207 ELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEI 266
L SD +I + + ++ + + + + +++N+ RG +I+++ ++ L +
Sbjct: 223 SLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHL 282
Query: 267 AGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEAL 318
AGLDVF NEP + LDN+ L PH T E L + +EAL
Sbjct: 283 FAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAXGWLLIQGIEAL 334
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 116/242 (47%), Gaps = 11/242 (4%)
Query: 87 VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL 146
+ T S G +HI + C+ RGI V NA + A+ A+ LL+ R+ ++ +R
Sbjct: 71 ISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRS 130
Query: 147 WSKIGDYPL---GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY------NSRSKKPV 197
W G PL G KL K +GI G G+IG +AKR Q F ++ Y +S +
Sbjct: 131 WP--GWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASY 188
Query: 198 PYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEM 257
F+ ++ L + S + T +TR N+ + +L + I+VN RG ++D +
Sbjct: 189 QATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELV 248
Query: 258 VRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEA 317
V L G +A AG DVF EP + + +L N L PH ++ D+ A ++A
Sbjct: 249 VAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDMAHQANDLIDA 308
Query: 318 LF 319
LF
Sbjct: 309 LF 310
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 127/261 (48%), Gaps = 7/261 (2%)
Query: 46 ESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRR 105
+ +LS E+ LI+ E ++ + VT V A GV+++ + R+
Sbjct: 53 KQNLSKEE-LIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRK 111
Query: 106 GIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVG 165
GI V N + S AA+ G+++ + R+I A ++ G W + +G++L GK +G
Sbjct: 112 GILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWER--KKFMGTELNGKTLG 169
Query: 166 IVGLGNIGLQVAKRLQAFGCNVL-YNSRSKKPVPYAFYSN---VCELAANSDALIICCAL 221
I+GLG IG +VA R+Q+FG + Y+ V +F + E+ D + + L
Sbjct: 170 ILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPL 229
Query: 222 TDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP 281
T ++N K +VN RG ++DE ++R L G+ AGA LDVF EP
Sbjct: 230 LPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRD 289
Query: 282 KELLELDNVVLQPHRAVFTSE 302
+ L++ +NV+ PH T E
Sbjct: 290 RALVDHENVISCPHLGASTKE 310
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In
Transcription Corepression And Golgi Membrane Fission
Length = 358
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 125/237 (52%), Gaps = 12/237 (5%)
Query: 87 VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL 146
+V +G ++I + GIAV N + ++ AD+ + +++++R+ + + LR+G
Sbjct: 92 IVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREGT 151
Query: 147 W----SKIGDYPLGS-KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY-----NSRSKKP 196
+I + G+ ++ G+ +GI+GLG +G VA R +AFG NVL+ + ++
Sbjct: 152 RVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGIERA 211
Query: 197 VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENE 256
+ S + +L +SD + + C L + +IN + + + +VN RG ++DE
Sbjct: 212 LGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKA 271
Query: 257 MVRCLVRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPHRAVFTSECFVDLCELA 311
+ + L G I GA LDV E+EP+ + L + N++ PH A ++ + +++ E A
Sbjct: 272 LAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEA 328
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK
PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 125/237 (52%), Gaps = 12/237 (5%)
Query: 87 VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL 146
+V +G ++I + GIAV N + ++ AD+ + +++++R+ + + LR+G
Sbjct: 92 IVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREGT 151
Query: 147 W----SKIGDYPLGS-KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY-----NSRSKKP 196
+I + G+ ++ G+ +GI+GLG +G VA R +AFG NVL+ + ++
Sbjct: 152 RVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGIERA 211
Query: 197 VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENE 256
+ S + +L +SD + + C L + +IN + + + +VN RG ++DE
Sbjct: 212 LGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKA 271
Query: 257 MVRCLVRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPHRAVFTSECFVDLCELA 311
+ + L G I GA LDV E+EP+ + L + N++ PH A ++ + +++ E A
Sbjct: 272 LAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEA 328
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 112/221 (50%), Gaps = 6/221 (2%)
Query: 87 VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL 146
V A G++++ + RG+ V NA + AA+ A+ LL+ R+I +AD LR+
Sbjct: 69 VARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHT 128
Query: 147 WSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYS--- 203
W + G+++ GK VG+VGLG IG VA+R+ AFG V+ P A
Sbjct: 129 WKRSSFS--GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIEL 186
Query: 204 -NVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLV 262
++ +L A +D + + T +T +I++E + IIVN RG ++DE + +
Sbjct: 187 LSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAIT 246
Query: 263 RGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSEC 303
G + AGLDVF EP L EL VV+ PH T+E
Sbjct: 247 GGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEA 287
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 112/221 (50%), Gaps = 6/221 (2%)
Query: 87 VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL 146
V A G++++ + RG+ V NA + AA+ A+ LL+ R+I +AD LR+
Sbjct: 70 VARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHT 129
Query: 147 WSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYS--- 203
W + G+++ GK VG+VGLG IG VA+R+ AFG V+ P A
Sbjct: 130 WKRSSFS--GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIEL 187
Query: 204 -NVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLV 262
++ +L A +D + + T +T +I++E + IIVN RG ++DE + +
Sbjct: 188 LSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAIT 247
Query: 263 RGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSEC 303
G + AGLDVF EP L EL VV+ PH T+E
Sbjct: 248 GGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEA 288
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 125/237 (52%), Gaps = 12/237 (5%)
Query: 87 VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL 146
+V +G ++I + GIAV N + ++ AD+ + +++++R+ + + LR+G
Sbjct: 89 IVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGT 148
Query: 147 W----SKIGDYPLGS-KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY-----NSRSKKP 196
+I + G+ ++ G+ +GI+GLG +G VA R +AFG NVL+ + ++
Sbjct: 149 RVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERA 208
Query: 197 VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENE 256
+ S + +L +SD + + C L + +IN + + + +VN RG ++DE
Sbjct: 209 LGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKA 268
Query: 257 MVRCLVRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPHRAVFTSECFVDLCELA 311
+ + L G I GA LDV E+EP+ + L + N++ PH A ++ + +++ E A
Sbjct: 269 LAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEA 325
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 122/253 (48%), Gaps = 17/253 (6%)
Query: 90 ASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQG---- 145
A AG + + + RG+A AN+ +D A+ L++ V+R S ++R R G
Sbjct: 87 AGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPET 146
Query: 146 ---LWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKR-LQAFGCNVLY------NSRSKK 195
+ +IG + G +G VGLG I ++A++ + G ++Y ++ ++K
Sbjct: 147 FNRVHLEIGKSAHNPR--GHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEK 204
Query: 196 PVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDEN 255
+ ++ ELA SD + + T +I+ A+ IVN RG VI ++
Sbjct: 205 ALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQD 264
Query: 256 EMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNL 315
++ L G++ AGLDV E EP V KEL+E+ +V L H E F + L + N+
Sbjct: 265 ALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNI 324
Query: 316 EA-LFSNQPLLSP 327
+ L +PLL+P
Sbjct: 325 DRFLLQGKPLLTP 337
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 122/253 (48%), Gaps = 17/253 (6%)
Query: 90 ASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQG---- 145
A AG + + + RG+A AN+ +D A+ L++ V+R S ++R R G
Sbjct: 87 AGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPET 146
Query: 146 ---LWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKR-LQAFGCNVLY------NSRSKK 195
+ +IG + G +G VGLG I ++A++ + G ++Y ++ ++K
Sbjct: 147 FNRVHLEIGKSAHNPR--GHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEK 204
Query: 196 PVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDEN 255
+ ++ ELA SD + + T +I+ A+ IVN RG VI ++
Sbjct: 205 ALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQD 264
Query: 256 EMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNL 315
++ L G++ AGLDV E EP V KEL+E+ +V L H E F + L + N+
Sbjct: 265 ALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNI 324
Query: 316 EA-LFSNQPLLSP 327
+ L +PLL+P
Sbjct: 325 DRFLLQGKPLLTP 337
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 121/249 (48%), Gaps = 14/249 (5%)
Query: 90 ASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSK 149
A G ++ + C RG+ + + + A+ A+GL + + R + +AD F+R G +
Sbjct: 74 ALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRG 133
Query: 150 IGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSR----SKKPVPYAFYSNV 205
G+ L VG +G+G IGL +A RLQ +G + Y++R ++
Sbjct: 134 WQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGLRQVA 193
Query: 206 C-ELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG 264
C EL A+SD +++ L T ++N E++ + ++VN RG+V+DE ++ L RG
Sbjct: 194 CSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERG 253
Query: 265 EIAGAGLDVFENEPYV----PKE----LLELDNVVLQPHRAVFTSECFVDLCELAVGN-L 315
++ G DVFE E + P++ LL N + PH +++ A N L
Sbjct: 254 QLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNIL 313
Query: 316 EALFSNQPL 324
+AL +P+
Sbjct: 314 QALAGERPI 322
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 121/249 (48%), Gaps = 14/249 (5%)
Query: 90 ASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSK 149
A G ++ + C RG+ + + + A+ A+GL + + R + +AD F+R G +
Sbjct: 74 ALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRG 133
Query: 150 IGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSR----SKKPVPYAFYSNV 205
G+ L VG +G+G IGL +A RLQ +G + Y++R ++
Sbjct: 134 WQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGLRQVA 193
Query: 206 C-ELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG 264
C EL A+SD +++ L T ++N E++ + ++VN RG+V+DE ++ L RG
Sbjct: 194 CSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERG 253
Query: 265 EIAGAGLDVFENEPYV----PKE----LLELDNVVLQPHRAVFTSECFVDLCELAVGN-L 315
++ G DVFE E + P++ LL N + PH +++ A N L
Sbjct: 254 QLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNIL 313
Query: 316 EALFSNQPL 324
+AL +P+
Sbjct: 314 QALAGERPI 322
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 122/253 (48%), Gaps = 17/253 (6%)
Query: 90 ASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQG---- 145
A AG + + + RG+A AN+ +D A+ L++ V+R S ++R R G
Sbjct: 87 AGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPET 146
Query: 146 ---LWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKR-LQAFGCNVLY------NSRSKK 195
+ +IG + G +G VGLG I ++A++ + G ++Y ++ ++K
Sbjct: 147 FNRVHLEIGKSAHNPR--GHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEK 204
Query: 196 PVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDEN 255
+ ++ ELA SD + + T +I+ A+ IVN RG VI ++
Sbjct: 205 ALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQD 264
Query: 256 EMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNL 315
++ L G++ AGLDV E EP V KEL+E+ +V L H E F + L + N+
Sbjct: 265 ALIAALKSGKLLSAGLDVHEFEPNVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNI 324
Query: 316 EA-LFSNQPLLSP 327
+ L +PLL+P
Sbjct: 325 DRFLLQGKPLLTP 337
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 124/237 (52%), Gaps = 12/237 (5%)
Query: 87 VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL 146
+V +G ++I + GIAV N + ++ AD+ + +++++R+ + + LR+G
Sbjct: 92 IVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREGT 151
Query: 147 W----SKIGDYPLGS-KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY-----NSRSKKP 196
+I + G+ ++ G+ +GI+GL +G VA R +AFG NVL+ + ++
Sbjct: 152 RVQSVEQIREVASGAARIRGETLGIIGLERVGQAVALRAKAFGFNVLFYDPYLSDGIERA 211
Query: 197 VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENE 256
+ S + +L +SD + + C L + +IN + + + +VN RG ++DE
Sbjct: 212 LGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKA 271
Query: 257 MVRCLVRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPHRAVFTSECFVDLCELA 311
+ + L G I GA LDV E+EP+ + L + N++ PH A ++ + +++ E A
Sbjct: 272 LAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEA 328
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 127/250 (50%), Gaps = 22/250 (8%)
Query: 89 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWS 148
T S G +HI + C+++GI V + + + A+ ++ + +++ + +++ +S
Sbjct: 70 TRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLKRIEDRVKKLNFS 129
Query: 149 KIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL-YNSRSKKPVPYA--FYSNV 205
+ + L +L +G++G G IG +VA AFG VL Y+ ++ + Y+++
Sbjct: 130 QDSEI-LARELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCYDVVKREDLKEKGCVYTSL 188
Query: 206 CELAANSDALIICCALTDQTRRMINREVMLALGKEGI-IVNVGRGAVIDENEMVRCLVRG 264
EL SD + + T +T IN E ++L K+G+ ++N RG V+D + + R RG
Sbjct: 189 DELLKESDVISLHVPYTKETHHXINEE-RISLXKDGVYLINTARGKVVDTDALYRAYQRG 247
Query: 265 EIAGAGLDVFENEPYV-------------PKELLEL---DNVVLQPHRAVFTSECFVDLC 308
+ +G GLDVFE+E + ++LEL DNV++ PH A +T + +
Sbjct: 248 KFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPHIAYYTDKSLERIR 307
Query: 309 ELAVGNLEAL 318
E V ++A
Sbjct: 308 EETVKVVKAF 317
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 103/225 (45%), Gaps = 19/225 (8%)
Query: 91 SAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKI 150
S G N + + R+RGI V NA + A+ +G +I + R+I G W K
Sbjct: 88 SVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKT 147
Query: 151 GDYPLGSK-LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVC--- 206
+GS+ + GK +GIVG GNIG QV ++ G V Y S K Y NV
Sbjct: 148 A---IGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDK----LQYGNVKPAA 200
Query: 207 ---ELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVR 263
EL SD + + + T ++I + + K ++N RG+ +D + + L
Sbjct: 201 SLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQE 260
Query: 264 GEIAGAGLDVFENEPYVPKE-----LLELDNVVLQPHRAVFTSEC 303
G +AGA +DVF EP E L L+NV+L PH T E
Sbjct: 261 GHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEA 305
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 114/243 (46%), Gaps = 11/243 (4%)
Query: 89 TASAGVNHIHMPECRRRGIAVAN-AGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLW 147
TA G +HI + G+ VA GS A D + +LI + R + +G W
Sbjct: 92 TAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILI-LMRNFVPGYNQVVKGEW 150
Query: 148 SKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK------KPVPYAF 201
+ G L GK +G VG G IG + +RL+ FGCN+LY+ R + K F
Sbjct: 151 NVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKF 210
Query: 202 YSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCL 261
++ E+ D ++I LT++TR M N+E++ L K +IVN RGA+++ +V +
Sbjct: 211 VEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAV 270
Query: 262 VRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALF 319
G I G DV++ +P PK+ + N + PH + T + + LE F
Sbjct: 271 ESGHIGGYSGDVWDPQP-APKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYF 329
Query: 320 SNQ 322
+
Sbjct: 330 KGE 332
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 114/243 (46%), Gaps = 11/243 (4%)
Query: 89 TASAGVNHIHMPECRRRGIAVAN-AGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLW 147
TA G +HI + G+ VA GS A D + +LI + R + +G W
Sbjct: 98 TAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILI-LMRNFVPGYNQVVKGEW 156
Query: 148 SKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK------KPVPYAF 201
+ G L GK +G VG G IG + +RL+ FGCN+LY+ R + K F
Sbjct: 157 NVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKF 216
Query: 202 YSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCL 261
++ E+ D ++I LT++TR M N+E++ L K +IVN RGA+++ +V +
Sbjct: 217 VEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAV 276
Query: 262 VRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALF 319
G I G DV++ +P PK+ + N + PH + T + + LE F
Sbjct: 277 ESGHIGGYSGDVWDPQP-APKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYF 335
Query: 320 SNQ 322
+
Sbjct: 336 KGE 338
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 119/249 (47%), Gaps = 14/249 (5%)
Query: 90 ASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSK 149
A G ++ + C RG+ + + + A+ A+GL + + R + +AD F+R G +
Sbjct: 74 ALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRG 133
Query: 150 IGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSR----SKKPVPYAFYSNV 205
G+ L VG +G+G IGL +A RLQ +G + Y+ ++
Sbjct: 134 WQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVA 193
Query: 206 C-ELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG 264
C EL A+SD +++ L T ++N E++ + ++VN RG+V+DE ++ L RG
Sbjct: 194 CSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERG 253
Query: 265 EIAGAGLDVFENEPYV----PKE----LLELDNVVLQPHRAVFTSECFVDLCELAVGN-L 315
++ G DVFE E + P++ LL N + PH +++ A N L
Sbjct: 254 QLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNIL 313
Query: 316 EALFSNQPL 324
+AL +P+
Sbjct: 314 QALAGERPI 322
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 119/249 (47%), Gaps = 14/249 (5%)
Query: 90 ASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSK 149
A G ++ + C RG+ + + + A+ A+GL + + R + +AD F+R G +
Sbjct: 74 ALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRG 133
Query: 150 IGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSR----SKKPVPYAFYSNV 205
G+ L VG +G+G IGL +A RLQ +G + Y+ ++
Sbjct: 134 WQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVA 193
Query: 206 C-ELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG 264
C EL A+SD +++ L T ++N E++ + ++VN RG+V+DE ++ L RG
Sbjct: 194 CSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERG 253
Query: 265 EIAGAGLDVFENEPYV----PKE----LLELDNVVLQPHRAVFTSECFVDLCELAVGN-L 315
++ G DVFE E + P++ LL N + PH +++ A N L
Sbjct: 254 QLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNIL 313
Query: 316 EALFSNQPL 324
+AL +P+
Sbjct: 314 QALAGERPI 322
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|B Chain B, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|C Chain C, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|D Chain D, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|E Chain E, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|F Chain F, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
Length = 334
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 118/249 (47%), Gaps = 14/249 (5%)
Query: 90 ASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSK 149
A G ++ + C RG+ + + + A+ A+GL + + R + +AD F+R G +
Sbjct: 75 ALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRG 134
Query: 150 IGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSR----SKKPVPYAFYSNV 205
G+ L VG +G G IGL A RLQ +G + Y++ ++
Sbjct: 135 WQPRFYGTGLDNATVGFLGXGAIGLAXADRLQGWGATLQYHAAKALDTQTEQRLGLRQVA 194
Query: 206 C-ELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG 264
C EL A+SD +++ L T ++N E++ + ++VN RG+V+DE ++ L RG
Sbjct: 195 CSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERG 254
Query: 265 EIAGAGLDVFENEPYV----PKE----LLELDNVVLQPHRAVFTSECFVDLCELAVGN-L 315
++ G DVFE E + P++ LL N + PH +++ A N L
Sbjct: 255 QLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNIL 314
Query: 316 EALFSNQPL 324
+AL +P+
Sbjct: 315 QALAGERPI 323
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 124/280 (44%), Gaps = 16/280 (5%)
Query: 45 YESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRR 104
Y +S E+ L + + + I+ + VT + A G+++I E +
Sbjct: 31 YMPEISKEELL-NIIGNYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEK 89
Query: 105 RGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRV 164
R I V A +D A + +GL+I RK+ ++ + G++ KI G +L GK +
Sbjct: 90 RNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIE----GLELAGKTI 145
Query: 165 GIVGLGNIGLQVAKRLQAFGCNVL----YNSRSKKPVPYAFYSNVCELAANSDALIICCA 220
GIVG G IG +V A G VL + R K A ++ EL NSD + +
Sbjct: 146 GIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVT 205
Query: 221 LTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYV 280
++ + +I+ + IIVN R ++ ++ + +G++ DVF NEP
Sbjct: 206 VSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEP-- 263
Query: 281 PK-----ELLELDNVVLQPHRAVFTSECFVDLCELAVGNL 315
PK ELL+ + V++ H T E + E+ NL
Sbjct: 264 PKEEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNL 303
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 122/263 (46%), Gaps = 27/263 (10%)
Query: 88 VTASAGVNHIHMPECRRRGIAVANA-GSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL 146
V+ AG HI + C +G+ V GS + A+ L++ R+I L+ G
Sbjct: 81 VSRDAG-GHIDLEACTDKGVVVLEGKGSPVA--PAELTWALVMAAQRRIPQYVASLKHGA 137
Query: 147 WSKIG--------DYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY----NSRSK 194
W + G ++ +G L G+ +GI G G IG VA +AFG NVL NS+ +
Sbjct: 138 WQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKER 197
Query: 195 -KPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVID 253
+ +A + L SD L + L D+TR +I + + + VN R +++
Sbjct: 198 ARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVE 257
Query: 254 ENEMVRCLVRGEIAGAGLDVFENEPYVP-KELLELDNVVLQPHRAVFTSE--------CF 304
EN MV L RG A +DVFE EP + LL ++N + PH E F
Sbjct: 258 ENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESYEMYFGIAF 317
Query: 305 VDLCELAVGNLEALFSNQPLLSP 327
++ ++ GN++++ +N L+P
Sbjct: 318 QNILDILQGNVDSV-ANPTALAP 339
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 120/237 (50%), Gaps = 12/237 (5%)
Query: 87 VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL 146
+V +G +++ + GIAV N S ++ AD+ + +++++R+ + + LR+G
Sbjct: 73 IVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALREGT 132
Query: 147 W----SKIGDYPLGS-KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY-----NSRSKKP 196
+I + G+ ++ G+ +G++G G G VA R +AFG +V++ ++
Sbjct: 133 RVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERS 192
Query: 197 VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENE 256
+ + +L SD + + C L + +IN + + + +VN RG ++DE
Sbjct: 193 LGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKA 252
Query: 257 MVRCLVRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPHRAVFTSECFVDLCELA 311
+ + L G I GA LDV E+EP+ + L + N++ PH A ++ + +++ E A
Sbjct: 253 LAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAA 309
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 113/244 (46%), Gaps = 9/244 (3%)
Query: 93 GVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGD 152
G N + + +RGI V NA + A+ +G L+ + R + A+ +G+W+K+
Sbjct: 85 GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAA 144
Query: 153 YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNV-LYNSRSKKPVPYAFY-SNVCELAA 210
++ GK++GI+G G+IG Q+ ++ G V Y+ +K P+ A ++ +L
Sbjct: 145 GSFEAR--GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLN 202
Query: 211 NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAG 270
SD + + T+ M+ + + + +++N RG V+D + L +AGA
Sbjct: 203 MSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAA 262
Query: 271 LDVFENEPYVPKE-----LLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLL 325
+DVF EP + L E DNV+L PH T E ++ G L N L
Sbjct: 263 IDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTL 322
Query: 326 SPVT 329
S V
Sbjct: 323 SAVN 326
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 113/244 (46%), Gaps = 9/244 (3%)
Query: 93 GVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGD 152
G N + + +RGI V NA + A+ +G L+ + R + A+ +G+W+K+
Sbjct: 85 GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAA 144
Query: 153 YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNV-LYNSRSKKPVPYAFY-SNVCELAA 210
++ GK++GI+G G+IG Q+ ++ G V Y+ +K P+ A ++ +L
Sbjct: 145 GSFEAR--GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLN 202
Query: 211 NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAG 270
SD + + T+ M+ + + + +++N RG V+D + L +AGA
Sbjct: 203 MSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAA 262
Query: 271 LDVFENEPYVPKE-----LLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLL 325
+DVF EP + L E DNV+L PH T E ++ G L N L
Sbjct: 263 IDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTL 322
Query: 326 SPVT 329
S V
Sbjct: 323 SAVN 326
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 113/244 (46%), Gaps = 9/244 (3%)
Query: 93 GVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGD 152
G N + + +RGI V NA + A+ +G L+ + R + A+ +G+W+K+
Sbjct: 84 GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAA 143
Query: 153 YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNV-LYNSRSKKPVPYAFY-SNVCELAA 210
++ GK++GI+G G+IG Q+ ++ G V Y+ +K P+ A ++ +L
Sbjct: 144 GSFEAR--GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLN 201
Query: 211 NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAG 270
SD + + T+ M+ + + + +++N RG V+D + L +AGA
Sbjct: 202 MSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAA 261
Query: 271 LDVFENEPYVPKE-----LLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLL 325
+DVF EP + L E DNV+L PH T E ++ G L N L
Sbjct: 262 IDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTL 321
Query: 326 SPVT 329
S V
Sbjct: 322 SAVN 325
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 115/256 (44%), Gaps = 17/256 (6%)
Query: 91 SAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKI 150
+ G ++I M ++ GI ++N + A+ A+ + + R + L+ G + K
Sbjct: 76 NVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKA 135
Query: 151 GDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL-YNSRSKK-PVPYAFYSNVCEL 208
G + +G +LG + VG++G G+IG K + FG V+ Y+ K P Y ++ +L
Sbjct: 136 GTF-IGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDL 194
Query: 209 AANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAG 268
SD + + +Q +IN + I++N R +ID M+ L G++AG
Sbjct: 195 FKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAG 254
Query: 269 AGLDVFENEPY--------------VPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN 314
G+D +E E + ELL + NVVL PH A +T ++ ++ +
Sbjct: 255 VGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQH 314
Query: 315 LEALFSNQPLLSPVTA 330
L + + VT
Sbjct: 315 LVDFLTKGETSTEVTG 330
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 114/245 (46%), Gaps = 11/245 (4%)
Query: 93 GVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGD 152
G N + + +RGI V NA + A+ +G L+ + R + A+ +G+W+K+
Sbjct: 85 GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAA 144
Query: 153 YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNV-LYNSRSKKPVPYAFY-SNVCELAA 210
++ GK++GI+G G+IG Q+ ++ G V Y+ +K P+ A ++ +L
Sbjct: 145 GSFEAR--GKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKLPLGNATQVQHLSDLLN 202
Query: 211 NSDALIICCALTDQTRRMINREVMLALGKEG-IIVNVGRGAVIDENEMVRCLVRGEIAGA 269
SD + + T+ + ++L K G +++N RG V+D + L +AGA
Sbjct: 203 XSDVVSLHVPENPSTKNXXGAK-EISLXKPGSLLINASRGTVVDIPALCDALASKHLAGA 261
Query: 270 GLDVFENEPYVPKE-----LLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPL 324
+DVF EP + L E DNV+L PH T E ++ G L N
Sbjct: 262 AIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGST 321
Query: 325 LSPVT 329
LS V
Sbjct: 322 LSAVN 326
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 105/273 (38%), Gaps = 31/273 (11%)
Query: 40 QLLKAYESSLSLEQFLISHAHSIEAILCSGDSP-----------------------VTXX 76
QLL + L L ++L S+ H++ + D P +T
Sbjct: 48 QLLGSVSGELGLRKYLESNGHTL-VVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPE 106
Query: 77 XXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKIS 136
+TA G +H+ + R + VA S A+ V +++ + R
Sbjct: 107 RIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYL 166
Query: 137 SADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP 196
+ + R+G W+ L VG V G IGL V +RL F ++ Y R + P
Sbjct: 167 PSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLP 226
Query: 197 VPYAFYSNVCELAANSDALIIC------CALTDQTRRMINREVMLALGKEGIIVNVGRGA 250
N+ A D +C C L +T MIN E + + IVN RG
Sbjct: 227 ESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGK 286
Query: 251 VIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE 283
+ D + + R L G +AG DV+ +P PK+
Sbjct: 287 LCDRDAVARALESGRLAGYAGDVWFPQP-APKD 318
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 105/273 (38%), Gaps = 31/273 (11%)
Query: 40 QLLKAYESSLSLEQFLISHAHSIEAILCSGDSP-----------------------VTXX 76
QLL + L L ++L S+ H++ + D P +T
Sbjct: 49 QLLGSVSGELGLRKYLESNGHTL-VVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPE 107
Query: 77 XXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKIS 136
+TA G +H+ + R + VA S A+ V +++ + R
Sbjct: 108 RIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYL 167
Query: 137 SADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP 196
+ + R+G W+ L VG V G IGL V +RL F ++ Y R + P
Sbjct: 168 PSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLP 227
Query: 197 VPYAFYSNVCELAANSDALIIC------CALTDQTRRMINREVMLALGKEGIIVNVGRGA 250
N+ A D +C C L +T MIN E + + IVN RG
Sbjct: 228 ESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGK 287
Query: 251 VIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE 283
+ D + + R L G +AG DV+ +P PK+
Sbjct: 288 LCDRDAVARALESGRLAGYAGDVWFPQP-APKD 319
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 105/273 (38%), Gaps = 31/273 (11%)
Query: 40 QLLKAYESSLSLEQFLISHAHSIEAILCSGDSP-----------------------VTXX 76
QLL + L L ++L S+ H++ + D P +T
Sbjct: 49 QLLGSVSGELGLRKYLESNGHTL-VVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPE 107
Query: 77 XXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKIS 136
+TA G +H+ + R + VA S A+ V +++ + R
Sbjct: 108 RIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYL 167
Query: 137 SADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP 196
+ + R+G W+ L VG V G IGL V +RL F ++ Y R + P
Sbjct: 168 PSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLP 227
Query: 197 VPYAFYSNVCELAANSDALIIC------CALTDQTRRMINREVMLALGKEGIIVNVGRGA 250
N+ A D +C C L +T MIN E + + IVN RG
Sbjct: 228 ESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGK 287
Query: 251 VIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE 283
+ D + + R L G +AG DV+ +P PK+
Sbjct: 288 LCDRDAVARALESGRLAGYAGDVWFPQP-APKD 319
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 113/245 (46%), Gaps = 11/245 (4%)
Query: 93 GVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGD 152
G N + + +RGI V NA + A+ +G L+ + R + A+ +G+ +K+
Sbjct: 79 GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAA 138
Query: 153 YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNV-LYNSRSKKPVPYAFY-SNVCELAA 210
++ GK++GI+G G+IG Q+ ++ G V Y+ +K P+ A ++ +L
Sbjct: 139 GSFEAR--GKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKLPLGNATQVQHLSDLLN 196
Query: 211 NSDALIICCALTDQTRRMINREVMLALGKEG-IIVNVGRGAVIDENEMVRCLVRGEIAGA 269
SD + + T+ + ++L K G +++N RG V+D + L +AGA
Sbjct: 197 XSDVVSLHVPENPSTKNXXGAK-EISLXKPGSLLINASRGTVVDIPALADALASKHLAGA 255
Query: 270 GLDVFENEPYVPKE-----LLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPL 324
+DVF EP + L E DNV+L PH T E ++ G L N
Sbjct: 256 AIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGST 315
Query: 325 LSPVT 329
LS V
Sbjct: 316 LSAVN 320
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 111/244 (45%), Gaps = 18/244 (7%)
Query: 89 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWS 148
+ AGV+ + CRR + N IF ++ G L+ + R++ +Q LW
Sbjct: 73 STYAGVDVLLDARCRR-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQ 131
Query: 149 KIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCEL 208
+P L G+ + I+G G+IG +A + FG VL SRS + A + V +L
Sbjct: 132 S---HPY-QGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRE--RAGFDQVYQL 185
Query: 209 AA------NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLV 262
A +D ++ T +T + I+ NVGRG I+E +++ L
Sbjct: 186 PALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALR 245
Query: 263 RGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFS 320
G++ A LDVFE EP +P + L N+++ PH + ++ D+ ++ V N
Sbjct: 246 TGKLGMAVLDVFEQEP-LPADSPLWGQPNLIITPHNSAYSFPD--DVAQIFVRNYIRFID 302
Query: 321 NQPL 324
QPL
Sbjct: 303 GQPL 306
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 102/254 (40%), Gaps = 8/254 (3%)
Query: 33 KFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSP--VTXXXXXXXXXXXXVVTA 90
K++ L S + L H H E I+ P +T +TA
Sbjct: 61 KYLESQGHELVVTSSKDGPDSELEKHLHDAEVIISQPFWPAYLTAERIAKAPKLKLALTA 120
Query: 91 SAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKI 150
G +H+ + I VA S+ A+ V +++ + R + + R G W+
Sbjct: 121 GIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNGGWNIA 180
Query: 151 GDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSN 204
+ G VG V G IGL+V + L F ++ Y R + P + +++
Sbjct: 181 DCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHRLPEAVEKELNLTWHAT 240
Query: 205 VCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG 264
++ D + + C L +T MIN E + + +VN RG + D + +VR L G
Sbjct: 241 REDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESG 300
Query: 265 EIAGAGLDVFENEP 278
+AG DV+ +P
Sbjct: 301 RLAGYAGDVWFPQP 314
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Lactobacillus Plantarum
Length = 324
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 108/216 (50%), Gaps = 19/216 (8%)
Query: 91 SAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSA---DRFLRQGLW 147
SAGV+++ + + G+ VAN I +D +++ + ++ V R +A R RQ W
Sbjct: 69 SAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQ--W 126
Query: 148 SKIGDYPLG-SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVC 206
+ P+ S L G+++ I G G IG +A + A G +V+ + + P + F+ V
Sbjct: 127 A----LPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADH-FHETVA 181
Query: 207 ELAANS-----DALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCL 261
A + ++ LT T + + E+ ++ +++N+GRG +D ++ L
Sbjct: 182 FTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTAL 241
Query: 262 VRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPH 295
+++ A LDV E EP +P + L + D+V++ PH
Sbjct: 242 DHHQLSMAALDVTEPEP-LPTDHPLWQRDDVLITPH 276
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium
Moraxella Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 102/254 (40%), Gaps = 8/254 (3%)
Query: 33 KFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSP--VTXXXXXXXXXXXXVVTA 90
K++ L S + L H H E I+ P +T +TA
Sbjct: 62 KYLESQGHELVVTSSKDGPDSELEKHLHDAEVIISQPFWPAYLTAERIAKAPKLKLALTA 121
Query: 91 SAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKI 150
G +H+ + I VA S+ A+ V +++ + R + + R G W+
Sbjct: 122 GIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNGGWNIA 181
Query: 151 GDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSN 204
+ G VG V G IGL+V + L F ++ Y R + P + +++
Sbjct: 182 DCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHRLPEAVEKELNLTWHAT 241
Query: 205 VCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG 264
++ D + + C L +T MIN E + + +VN RG + D + +VR L G
Sbjct: 242 REDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESG 301
Query: 265 EIAGAGLDVFENEP 278
+AG DV+ +P
Sbjct: 302 RLAGYAGDVWFPQP 315
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 16/163 (9%)
Query: 164 VGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV--PYAFYSNVCELAANSDALIICCAL 221
VG++G+G+IG VA+ A G V+ + P P+ Y++ + +D + + L
Sbjct: 151 VGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTPL 210
Query: 222 TDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENE---- 277
T MI + + + K ++N RG ++D +++ L GEIAGAGLD E
Sbjct: 211 FPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSYF 270
Query: 278 ----------PYVPKELLELDNVVLQPHRAVFTSECFVDLCEL 310
P K L ++ NVV+ PH A +T ++ ++
Sbjct: 271 GHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQI 313
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 121/258 (46%), Gaps = 25/258 (9%)
Query: 91 SAGVNHIHMPECRRRGIAVANAGSIFSDDA-ADAAVGLLIDVWRKISSAD-RFLRQGL-W 147
+ GV++I M + + G + N ++S +A A+ A + R+ + D + R L W
Sbjct: 78 NVGVDNIDMAKAKELGFQITNV-PVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRW 136
Query: 148 SKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV--PYAFY-SN 204
+ +G ++ + VG+VG G+IG + ++ FG V+ + P +Y +
Sbjct: 137 APT----IGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDS 192
Query: 205 VCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG 264
+ +L +D + + MIN E + + ++ +IVNV RG ++D + ++R L G
Sbjct: 193 LDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSG 252
Query: 265 EIAGAGLDVFE------NEPYVPKE--------LLELDNVVLQPHRAVFTSECFVDLCEL 310
+I G +DV+E NE + KE L+ NV++ PH A +T+ ++
Sbjct: 253 KIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPHTAFYTTHAVRNMVVK 312
Query: 311 AVGNLEALFSNQPLLSPV 328
A N L + +PV
Sbjct: 313 AFDNNLELVEGKEAETPV 330
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 90/202 (44%), Gaps = 12/202 (5%)
Query: 122 DAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQ 181
+ AV ++ +R+ Q LW + +Y VGI G G +G +VA+ LQ
Sbjct: 104 EYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEF----SVGIXGAGVLGAKVAESLQ 159
Query: 182 AFGCNVLYNSRSKKPVP----YAFYSNVCELAANSDALIICCALTDQTRRMINREVMLAL 237
A+G + SRS+K P Y + + LI T QT +IN E++ L
Sbjct: 160 AWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQL 219
Query: 238 GKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPH 295
++N+ RG + E +++ L G++ GA LDVF EP +P+E L V PH
Sbjct: 220 PDGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEP-LPQESPLWRHPRVAXTPH 278
Query: 296 RAVFTSEC-FVDLCELAVGNLE 316
A T +D + LE
Sbjct: 279 IAAVTRPAEAIDYISRTITQLE 300
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 120/258 (46%), Gaps = 25/258 (9%)
Query: 91 SAGVNHIHMPECRRRGIAVANAGSIFSDDA-ADAAVGLLIDVWRKISSAD-RFLRQGL-W 147
+ GV++I M + + G + N ++S +A A+ A + R+ + D + R L W
Sbjct: 78 NVGVDNIDMAKAKELGFQITNV-PVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRW 136
Query: 148 SKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV--PYAFY-SN 204
+ +G ++ + VG+VG G+IG + ++ FG V+ + P +Y +
Sbjct: 137 APT----IGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDS 192
Query: 205 VCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG 264
+ +L +D + + MIN E + + ++ +IVNV RG ++D + ++R L G
Sbjct: 193 LDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSG 252
Query: 265 EIAGAGLDVFE------NEPYVPKE--------LLELDNVVLQPHRAVFTSECFVDLCEL 310
+I G +DV+E NE + KE L+ NV++ P A +T+ ++
Sbjct: 253 KIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVK 312
Query: 311 AVGNLEALFSNQPLLSPV 328
A N L + +PV
Sbjct: 313 AFDNNLELVEGKEAETPV 330
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 114/260 (43%), Gaps = 29/260 (11%)
Query: 91 SAGVNHIHMPECRRRGIAVANA-----GSIFSDDAADAAVGLLIDVWRKISSADRFLRQG 145
+ GV++I M + + G + N +I A AA L D A R LR
Sbjct: 78 NVGVDNIDMDKAKELGFQITNVPVYSPNAIAEHAAIQAARVLRQDKRMDEKMAKRDLR-- 135
Query: 146 LWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV--PYAFY- 202
W+ +G ++ + VG+VG G+IG + ++ FG V+ K P +Y
Sbjct: 136 -WAPT----IGREVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIFKNPELEKKGYYV 190
Query: 203 SNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLV 262
++ +L +D + + MIN + + + +IVN RG ++D + ++R L
Sbjct: 191 DSLDDLYKQADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLD 250
Query: 263 RGEIAGAGLDVFE------NEPYVPKE--------LLELDNVVLQPHRAVFTSECFVDLC 308
G+I G +D +E N+ + KE L++ NV++ PH A +T+ ++
Sbjct: 251 SGKIFGFVMDTYEDEVGVFNKDWEGKEFPDKRLADLIDRPNVLVTPHTAFYTTHAVRNMV 310
Query: 309 ELAVGNLEALFSNQPLLSPV 328
A N L + + SPV
Sbjct: 311 VKAFNNNLKLINGEKPDSPV 330
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 99/206 (48%), Gaps = 6/206 (2%)
Query: 91 SAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKI 150
+AG++H+ NAGS +D A+ A+ LL+ +++I ++G + +
Sbjct: 58 TAGLDHLPWESIPPHVTVAGNAGS-NADAVAEFALALLLAPYKRIIQYGEKXKRGDYGRD 116
Query: 151 GDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAA 210
+ PL + G++V ++GLG IG +V K L A G V SR+ K P+ F +++ E
Sbjct: 117 VEIPL---IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALR 173
Query: 211 NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAG 270
+ A + L TR ++ + + ++ + VNVGR V+D + ++R L
Sbjct: 174 EARAAVCALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFA 233
Query: 271 LDVF--ENEPYVPKELLELDNVVLQP 294
DV+ N+ E L NVV P
Sbjct: 234 SDVWWGRNDFAKDAEFFSLPNVVATP 259
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 107/250 (42%), Gaps = 20/250 (8%)
Query: 87 VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKIS-SADRFLRQG 145
++T +AG +HI + G +A + A+ AV + + R + + R ++
Sbjct: 73 ILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKN 132
Query: 146 LWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNS--RSKKPVPYAFYS 203
K+ + ++ VG+VGLG IG A+ G V+ K Y
Sbjct: 133 F--KVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIEDYCTQV 190
Query: 204 NVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVR 263
++ E+ SD + I + ++ R+ + + I+VN RG ++D ++ +
Sbjct: 191 SLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVES 250
Query: 264 GEIAGAGLDVFENEPYVPKELLE---LDN------------VVLQPHRAVFTSECFVDLC 308
G++ G G DV + E V + LE L+N V++ PH +T E ++
Sbjct: 251 GKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMV 310
Query: 309 ELAVGNLEAL 318
E++ NL+ L
Sbjct: 311 EVSYQNLKDL 320
>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
pdb|3GVX|B Chain B, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
Length = 290
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 109/234 (46%), Gaps = 9/234 (3%)
Query: 91 SAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKI 150
SAGV+HI + + +NAG+ +S A+ A LL+ + I + + G++ +
Sbjct: 57 SAGVDHIDVNGIPENVVLCSNAGA-YSISVAEHAFALLLAHAKNILENNELXKAGIFRQ- 114
Query: 151 GDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNV-CELA 209
+ L GK +GI+G G IG +VA +AFG V+ +RS S +L
Sbjct: 115 ---SPTTLLYGKALGILGYGGIGRRVAHLAKAFGXRVIAYTRSSVDQNVDVISESPADLF 171
Query: 210 ANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGA 269
SD ++I LTD+TR +N ++ K IVNV R V+ + + + L
Sbjct: 172 RQSDFVLIAIPLTDKTRGXVNSRLLANARKNLTIVNVARADVVSKPDXIGFLKERSDVWY 231
Query: 270 GLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLC-ELAVGNLEALFSNQ 322
DV+ NEP + + L N +L PH A S D+ +LA N+ F +
Sbjct: 232 LSDVWWNEPEITET--NLRNAILSPHVAGGXSGEIXDIAIQLAFENVRNFFEGE 283
>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|B Chain B, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|C Chain C, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|D Chain D, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
Length = 365
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 90/208 (43%), Gaps = 9/208 (4%)
Query: 104 RRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQG--LWSKIGDYPLGSKLGG 161
+RGI V G +F++ A+ +G + + R I AD ++G LW G+ + G
Sbjct: 118 QRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNAS-ARLIAG 176
Query: 162 KRVGIVGLGNIGLQVAKRLQAFGCNVL----YNSRSKKPVPYAFYSNVCELAANSDALII 217
+GIVG G++G + + L F + + RS +++ ++ SD + +
Sbjct: 177 SEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSXLEENGVEPASLEDVLTKSDFIFV 236
Query: 218 CCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENE 277
A+T + +R + E + + + + R V+D + + + G I A DV+ E
Sbjct: 237 VAAVTSENKRFLGAEAFSSXRRGAAFILLSRADVVDFDALXAAVSSGHIVAAS-DVYPEE 295
Query: 278 PY-VPKELLELDNVVLQPHRAVFTSECF 304
P + + L + HRA F
Sbjct: 296 PLPLDHPVRSLKGFIRSAHRAGALDSAF 323
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 104/253 (41%), Gaps = 19/253 (7%)
Query: 87 VVTASAGVNHIHMPECRRRGIAVAN---AGSIFSDDAADAAVGLLIDVWRKISSADRFLR 143
VV A G +HI + + G ++ GS A + +L+ V + + ++ +
Sbjct: 88 VVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIIN 147
Query: 144 QGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCN-VLYNSRSKKP------ 196
W + GK + +G G IG +V +RL F +LY P
Sbjct: 148 HD-WEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEK 206
Query: 197 VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENE 256
V N+ EL A +D + + L T+ +IN+E++ K +VN RGA+ +
Sbjct: 207 VGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAED 266
Query: 257 MVRCLVRGEIAGAGLDVFENEPYVPKELLELD-------NVVLQPHRAVFTSECFVDLCE 309
+ L G++ G G DV+ +P PK+ D + PH + T + +
Sbjct: 267 VAAALESGQLRGYGGDVWFPQP-APKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQ 325
Query: 310 LAVGNLEALFSNQ 322
V LE+ F+ +
Sbjct: 326 GTVNILESFFTGK 338
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 103/253 (40%), Gaps = 19/253 (7%)
Query: 87 VVTASAGVNHIHMPECRRRGIAVAN---AGSIFSDDAADAAVGLLIDVWRKISSADRFLR 143
VV A G +HI + + G ++ GS A + +L+ V + + ++ +
Sbjct: 89 VVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIIN 148
Query: 144 QGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCN-VLYNSRSKKP------ 196
W + GK + +G G IG +V +RL F +LY P
Sbjct: 149 HD-WEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEK 207
Query: 197 VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENE 256
V N+ EL A +D + + L T+ +IN+E++ K +VN RGA+ +
Sbjct: 208 VGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAED 267
Query: 257 MVRCLVRGEIAGAGLDVFENEPYVPKELLELD-------NVVLQPHRAVFTSECFVDLCE 309
+ L G++ G G DV+ +P PK+ D + PH + T + +
Sbjct: 268 VAAALESGQLRGYGGDVWFPQP-APKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQ 326
Query: 310 LAVGNLEALFSNQ 322
LE+ F+ +
Sbjct: 327 GTKNILESFFTGK 339
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 87/209 (41%), Gaps = 33/209 (15%)
Query: 87 VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL 146
V TA+AG +H+ ++ GI + A A A V + ++ D F
Sbjct: 65 VGTATAGTDHVDEAWLKQAGIGFSAAPGC----NAIAVVEYVFSALLXLAERDGF----- 115
Query: 147 WSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFG-----CNVLYNSRSKKPVPYAF 201
L + +GIVG+GN+G ++ RL+A G C+ +R +
Sbjct: 116 -----------SLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDE----GD 160
Query: 202 YSNVCELAANSDALIICCALTD----QTRRMINREVMLALGKEGIIVNVGRGAVIDENEM 257
+ + EL +D L L +T + + ++ L I++N RG V+D +
Sbjct: 161 FRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAAL 220
Query: 258 VRCLVRGEIAGAGLDVFENEPYVPKELLE 286
+ L G+ LDV+E EP + LLE
Sbjct: 221 LARLNAGQPLSVVLDVWEGEPDLNVALLE 249
>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
pdb|2O4C|B Chain B, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
Length = 380
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 225 TRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKEL 284
TR +++ + AL +VN RGAV+D + R L G LDV+E EP E
Sbjct: 185 TRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPE- 243
Query: 285 LELDNVVLQPHRAVFTSE 302
L ++ PH A ++ E
Sbjct: 244 LAARCLIATPHIAGYSLE 261
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 153 YPLGSKLGGKRVGIVGLGNIGLQVAKRL 180
+P G L G+RVG++G G+ G QV L
Sbjct: 203 WPEGKSLAGRRVGVIGTGSTGQQVITSL 230
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 153 YPLGSKLGGKRVGIVGLGNIGLQVAKRL 180
+P G L G+RVG++G G+ G QV L
Sbjct: 170 WPEGKSLAGRRVGVIGTGSTGQQVITSL 197
>pdb|3GPI|A Chain A, Structure Of Putative Nad-Dependent EpimeraseDEHYDRATASE
From Methylobacillus Flagellatus
Length = 286
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVP 198
++ I G G++GL++A+RL A G V RS +P+P
Sbjct: 5 KILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMP 40
>pdb|2RIR|A Chain A, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|B Chain B, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|C Chain C, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|D Chain D, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|E Chain E, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|F Chain F, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|G Chain G, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|H Chain H, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
Length = 300
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRS 193
G +V ++GLG G +A+ A G NV +RS
Sbjct: 157 GSQVAVLGLGRTGXTIARTFAALGANVKVGARS 189
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 145 GLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNV 187
G++ +I PL +K GK V I+G G GL A++LQ+FG +V
Sbjct: 143 GIYKRIK--PLPTKKTGK-VIIIGSGVSGLAAARQLQSFGMDV 182
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 145 GLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNV 187
G++ +I PL +K GK V I+G G GL A++LQ+FG +V
Sbjct: 143 GIYKRIK--PLPTKKTGK-VIIIGSGVSGLAAARQLQSFGMDV 182
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 145 GLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNV 187
G++ +I PL +K GK V I+G G GL A++LQ+FG +V
Sbjct: 95 GIYKRIK--PLPTKKTGK-VIIIGSGVSGLAAARQLQSFGMDV 134
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 145 GLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNV 187
G++ +I PL +K GK V I+G G GL A++LQ+FG +V
Sbjct: 94 GIYKRIK--PLPTKKTGK-VIIIGSGVSGLAAARQLQSFGMDV 133
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 145 GLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNV 187
G++ +I PL +K GK V I+G G GL A++LQ+FG +V
Sbjct: 94 GIYKRIK--PLPTKKTGK-VIIIGSGVSGLAAARQLQSFGMDV 133
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 145 GLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNV 187
G++ +I PL +K GK V I+G G GL A++LQ+FG +V
Sbjct: 94 GIYKRIK--PLPTKKTGK-VIIIGSGVSGLAAARQLQSFGMDV 133
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 145 GLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNV 187
G++ +I PL +K GK V I+G G GL A++LQ+FG +V
Sbjct: 94 GIYKRIK--PLPTKKTGK-VIIIGSGVSGLAAARQLQSFGMDV 133
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 145 GLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNV 187
G++ +I PL +K GK + I+G G GL A++LQ+FG +V
Sbjct: 265 GIYKRI--KPLPTKKTGKVI-IIGSGVSGLAAARQLQSFGMDV 304
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 162 KRVGIVGLGNIGLQVAKRLQAFGCNV-LYNSRSKKPVPYAFYSNVCELAANSDALIICCA 220
++ G +GLG +G +AK L GC+V ++N +K A E AA ++ C
Sbjct: 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALG--AERAATPXEVVESCP 59
Query: 221 LTDQTRRMINREVMLALGKEGIIVNVGRG 249
+T + GK G++ +G G
Sbjct: 60 VTFAMLADPAAAEEVCFGKHGVLEGIGEG 88
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 12/54 (22%)
Query: 154 PLGSKLGGKRVGIVGLGNIGLQV-------AKRLQAF-----GCNVLYNSRSKK 195
P G GKRVG++G G G+Q+ AK L F C L NS K
Sbjct: 178 PKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSK 231
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 162 KRVGIVGLGNIGLQVAKRLQAFGCNV 187
KRV I+G G IG+++A L++FG V
Sbjct: 167 KRVAIIGAGYIGIELAGLLRSFGSEV 192
>pdb|3SC4|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase (A0qtm2
Homolog) Mycobacterium Thermoresistibile
pdb|3SC4|B Chain B, Crystal Structure Of A Short Chain Dehydrogenase (A0qtm2
Homolog) Mycobacterium Thermoresistibile
Length = 285
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 172 IGLQVAKRLQAFGCNVLYNSRSKKP---VPYAFYSNVCEL-AANSDALIICCALTD 223
IGL +AKR+ A G NV ++S +P +P Y+ E+ A AL I + D
Sbjct: 21 IGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRD 76
>pdb|2WSP|A Chain A, Thermotoga Maritima Alpha-L-Fucosynthase, Tmd224g, In
Complex With Alpha-L-Fuc-(1-2)-Beta-L-Fuc-N3
pdb|2WSP|B Chain B, Thermotoga Maritima Alpha-L-Fucosynthase, Tmd224g, In
Complex With Alpha-L-Fuc-(1-2)-Beta-L-Fuc-N3
Length = 449
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 16/85 (18%)
Query: 218 CCALTD-----QTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLD 272
CCA T+ + R NR ++ LG + G VI++ + VR + G L
Sbjct: 364 CCAKTEDGTEIRFTRKCNRIFVIFLG-----IPTGEKIVIEDLNLSAGTVRHFLTGERLS 418
Query: 273 VFEN-----EPYVPKELLELDNVVL 292
F+N E VPK+LLE D++ L
Sbjct: 419 -FKNVGKNLEITVPKKLLETDSITL 442
>pdb|2ZWY|A Chain A, Alpha-L-Fucosidase
pdb|2ZWY|B Chain B, Alpha-L-Fucosidase
pdb|2ZWZ|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Core1
pdb|2ZWZ|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Core1
pdb|2ZX5|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10
pdb|2ZX5|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10
pdb|2ZX6|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10-1c
pdb|2ZX6|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10-1c
pdb|2ZX7|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c
pdb|2ZX7|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c
pdb|2ZX8|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c-O
pdb|2ZX8|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c-O
pdb|2ZX9|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, B4
pdb|2ZX9|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, B4
pdb|2ZXA|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Fnj-Acetyl
pdb|2ZXA|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Fnj-Acetyl
pdb|2ZXB|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Ph-6fnj
pdb|2ZXB|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Ph-6fnj
pdb|2ZXD|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Iso-6fnj
pdb|2ZXD|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Iso-6fnj
Length = 455
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 16/85 (18%)
Query: 218 CCALTD-----QTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLD 272
CCA T+ + R NR ++ LG + G VI++ + VR + G L
Sbjct: 364 CCAKTEDGTEIRFTRKCNRIFVIFLG-----IPTGEKIVIEDLNLSAGTVRHFLTGERLS 418
Query: 273 VFEN-----EPYVPKELLELDNVVL 292
F+N E VPK+LLE D++ L
Sbjct: 419 -FKNVGKNLEITVPKKLLETDSITL 442
>pdb|1ODU|A Chain A, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
In Complex With Fucose
pdb|1ODU|B Chain B, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
In Complex With Fucose
Length = 449
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 16/85 (18%)
Query: 218 CCALTD-----QTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLD 272
CCA T+ + R NR ++ LG + G VI++ + VR + G L
Sbjct: 364 CCAKTEDGTEIRFTRKCNRIFVIFLG-----IPTGEKIVIEDLNLSAGTVRHFLTGERLS 418
Query: 273 VFEN-----EPYVPKELLELDNVVL 292
F+N E VPK+LLE D++ L
Sbjct: 419 -FKNVGKNLEITVPKKLLETDSITL 442
>pdb|1HL8|A Chain A, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
pdb|1HL8|B Chain B, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
pdb|1HL9|A Chain A, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
In Complex With A Mechanism Based Inhibitor
pdb|1HL9|B Chain B, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
In Complex With A Mechanism Based Inhibitor
Length = 449
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 16/85 (18%)
Query: 218 CCALTD-----QTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLD 272
CCA T+ + R NR ++ LG + G VI++ + VR + G L
Sbjct: 364 CCAKTEDGTEIRFTRKCNRIFVIFLG-----IPTGEKIVIEDLNLSAGTVRHFLTGERLS 418
Query: 273 VFEN-----EPYVPKELLELDNVVL 292
F+N E VPK+LLE D++ L
Sbjct: 419 -FKNVGKNLEITVPKKLLETDSITL 442
>pdb|4GBJ|A Chain A, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|B Chain B, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|C Chain C, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|D Chain D, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
Length = 297
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 162 KRVGIVGLGNIGLQVAKRLQAFGCN-VLYNSRSKKPVPYA-FYSNVCELA--ANSDALII 217
+++ +GLGN+G +A+ L G V++N + K P + V E A A + I+
Sbjct: 6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIV 65
Query: 218 CCALTDQT--RRMINREVMLALGKEGIIVN 245
L D + + E++ LGK+G+ V+
Sbjct: 66 FSVLADDAAVEELFSXELVEKLGKDGVHVS 95
>pdb|1HYH|A Chain A, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|B Chain B, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|C Chain C, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|D Chain D, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
Length = 309
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 162 KRVGIVGLGNIGLQVAKRLQAFGC 185
+++GI+GLGN+G VA L A G
Sbjct: 2 RKIGIIGLGNVGAAVAHGLIAQGV 25
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 154 PLGSK---LGGKRVGIVGLGNIGLQVAKRLQAFGCNV 187
P GS L K V I+G G +GL +AK LQ G +V
Sbjct: 16 PRGSHMNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDV 52
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
Length = 398
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 154 PLGSK---LGGKRVGIVGLGNIGLQVAKRLQAFGCNV 187
P GS L K V I+G G +GL +AK LQ G +V
Sbjct: 16 PRGSHMNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDV 52
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNV 187
L K V I+G G +GL +AK LQ G +V
Sbjct: 4 LSDKNVAIIGGGPVGLTMAKLLQQNGIDV 32
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
Length = 398
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 154 PLGSK---LGGKRVGIVGLGNIGLQVAKRLQAFGCNV 187
P GS L K V I+G G +GL +AK LQ G +V
Sbjct: 16 PRGSHMNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDV 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,009,214
Number of Sequences: 62578
Number of extensions: 346733
Number of successful extensions: 1200
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1021
Number of HSP's gapped (non-prelim): 97
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)