Query 020073
Match_columns 331
No_of_seqs 256 out of 2110
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 06:48:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020073.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020073hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15409 bifunctional glyoxyla 100.0 7.5E-75 1.6E-79 550.9 36.7 314 14-331 1-321 (323)
2 COG1052 LdhA Lactate dehydroge 100.0 2E-74 4.3E-79 546.1 34.8 313 14-331 1-324 (324)
3 COG0111 SerA Phosphoglycerate 100.0 1.6E-74 3.4E-79 547.2 33.5 310 14-330 2-320 (324)
4 PRK13243 glyoxylate reductase; 100.0 2.4E-72 5.3E-77 536.5 35.8 315 14-331 1-324 (333)
5 PRK08410 2-hydroxyacid dehydro 100.0 3.1E-71 6.8E-76 524.3 35.7 301 17-323 2-311 (311)
6 PRK06487 glycerate dehydrogena 100.0 2E-70 4.4E-75 520.1 36.3 306 18-329 3-317 (317)
7 PRK11790 D-3-phosphoglycerate 100.0 9.4E-70 2E-74 531.0 36.4 308 15-329 10-326 (409)
8 PLN02306 hydroxypyruvate reduc 100.0 1.4E-69 3.1E-74 524.4 37.2 316 11-329 11-354 (386)
9 PRK06932 glycerate dehydrogena 100.0 4.5E-69 9.7E-74 510.0 33.9 268 55-323 38-314 (314)
10 PLN02928 oxidoreductase family 100.0 5.9E-69 1.3E-73 515.4 34.6 306 11-327 14-343 (347)
11 PLN03139 formate dehydrogenase 100.0 2.4E-68 5.3E-73 514.5 37.0 289 35-324 71-369 (386)
12 PRK07574 formate dehydrogenase 100.0 2.3E-68 5E-73 514.9 35.3 293 35-328 64-366 (385)
13 TIGR01327 PGDH D-3-phosphoglyc 100.0 1.4E-67 3.1E-72 530.9 35.7 306 17-330 1-312 (525)
14 PRK13581 D-3-phosphoglycerate 100.0 9.2E-67 2E-71 525.1 36.3 305 17-330 2-313 (526)
15 KOG0068 D-3-phosphoglycerate d 100.0 3.1E-66 6.6E-71 476.0 27.1 304 17-329 8-320 (406)
16 PRK12480 D-lactate dehydrogena 100.0 2.3E-65 5E-70 487.5 32.7 309 17-329 3-330 (330)
17 PRK08605 D-lactate dehydrogena 100.0 8.2E-65 1.8E-69 484.7 32.2 310 14-329 2-332 (332)
18 KOG0069 Glyoxylate/hydroxypyru 100.0 1.2E-63 2.5E-68 468.3 27.4 267 63-329 63-335 (336)
19 PRK15469 ghrA bifunctional gly 100.0 4.8E-62 1E-66 461.2 31.8 262 60-331 37-309 (312)
20 PRK06436 glycerate dehydrogena 100.0 3.8E-61 8.3E-66 452.8 32.6 257 60-331 33-291 (303)
21 PRK15438 erythronate-4-phospha 100.0 1.5E-60 3.3E-65 458.7 33.1 275 17-323 2-281 (378)
22 PRK00257 erythronate-4-phospha 100.0 6.1E-60 1.3E-64 455.8 33.5 277 17-324 2-283 (381)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 6.5E-49 1.4E-53 344.0 15.2 172 125-297 1-178 (178)
24 KOG0067 Transcription factor C 100.0 2.1E-31 4.5E-36 248.3 12.5 253 64-323 76-340 (435)
25 PF00389 2-Hacid_dh: D-isomer 99.9 1.8E-22 3.9E-27 168.3 14.4 101 18-124 1-101 (133)
26 PTZ00075 Adenosylhomocysteinas 99.9 2.6E-21 5.7E-26 190.1 17.5 166 88-281 196-368 (476)
27 TIGR02853 spore_dpaA dipicolin 99.8 1.7E-20 3.6E-25 175.9 11.1 148 72-250 81-243 (287)
28 PRK08306 dipicolinate synthase 99.7 9.2E-16 2E-20 144.6 14.1 162 58-249 52-243 (296)
29 PLN02494 adenosylhomocysteinas 99.6 5E-16 1.1E-20 152.6 9.4 115 158-278 251-374 (477)
30 TIGR00936 ahcY adenosylhomocys 99.5 2.7E-14 5.8E-19 139.2 10.8 114 158-276 192-312 (406)
31 PRK13403 ketol-acid reductoiso 99.5 3.5E-14 7.7E-19 133.5 9.0 91 157-250 12-108 (335)
32 PF03446 NAD_binding_2: NAD bi 99.4 4.8E-13 1E-17 115.4 7.9 110 162-273 2-118 (163)
33 COG2084 MmsB 3-hydroxyisobutyr 99.4 1.9E-12 4.2E-17 120.5 10.3 117 162-278 1-126 (286)
34 PRK05476 S-adenosyl-L-homocyst 99.4 6.6E-12 1.4E-16 123.2 12.3 151 88-259 154-312 (425)
35 TIGR01505 tartro_sem_red 2-hyd 99.3 7.9E-12 1.7E-16 117.5 10.5 105 163-267 1-113 (291)
36 PRK11559 garR tartronate semia 99.3 1.3E-11 2.8E-16 116.2 10.6 117 162-278 3-127 (296)
37 PF00670 AdoHcyase_NAD: S-aden 99.3 1.4E-11 3E-16 105.3 7.8 97 158-259 20-123 (162)
38 PRK15461 NADH-dependent gamma- 99.2 4.3E-11 9.2E-16 113.0 10.6 110 162-273 2-119 (296)
39 PRK12490 6-phosphogluconate de 99.2 6.9E-11 1.5E-15 111.7 11.4 107 163-272 2-117 (299)
40 PRK05479 ketol-acid reductoiso 99.2 4.8E-11 1E-15 113.6 7.6 114 157-282 13-134 (330)
41 PRK09599 6-phosphogluconate de 99.2 2.1E-10 4.5E-15 108.5 11.1 108 163-273 2-118 (301)
42 PLN02350 phosphogluconate dehy 99.1 2E-10 4.2E-15 115.1 10.6 116 162-278 7-138 (493)
43 PLN02712 arogenate dehydrogena 99.1 3E-10 6.5E-15 117.9 10.1 107 156-263 364-476 (667)
44 PLN02256 arogenate dehydrogena 99.1 1.9E-09 4.2E-14 102.1 14.2 131 159-296 34-174 (304)
45 cd00401 AdoHcyase S-adenosyl-L 99.1 7E-10 1.5E-14 108.7 10.7 98 157-259 198-302 (413)
46 PRK15059 tartronate semialdehy 99.0 1.3E-09 2.7E-14 102.8 10.7 109 163-273 2-117 (292)
47 TIGR00872 gnd_rel 6-phosphoglu 99.0 3.1E-09 6.7E-14 100.4 11.5 103 163-267 2-113 (298)
48 PTZ00142 6-phosphogluconate de 99.0 1.9E-09 4E-14 107.7 9.9 116 162-278 2-132 (470)
49 PRK08655 prephenate dehydrogen 99.0 7.2E-09 1.6E-13 102.9 12.8 127 162-296 1-137 (437)
50 PLN02858 fructose-bisphosphate 99.0 3.3E-09 7.2E-14 117.7 11.4 112 160-273 3-124 (1378)
51 TIGR01692 HIBADH 3-hydroxyisob 98.9 3.3E-09 7.1E-14 99.7 9.1 105 166-272 1-113 (288)
52 PLN02858 fructose-bisphosphate 98.9 5.1E-09 1.1E-13 116.3 11.3 110 161-272 324-443 (1378)
53 KOG0409 Predicted dehydrogenas 98.9 4.3E-09 9.4E-14 97.4 8.8 113 158-272 32-153 (327)
54 TIGR00873 gnd 6-phosphoglucona 98.9 6E-09 1.3E-13 104.1 10.1 115 163-278 1-129 (467)
55 PLN02545 3-hydroxybutyryl-CoA 98.9 2.1E-08 4.5E-13 94.5 12.4 99 162-263 5-133 (295)
56 PRK07502 cyclohexadienyl dehyd 98.9 2.8E-08 6E-13 94.2 13.2 136 160-298 5-155 (307)
57 PLN02712 arogenate dehydrogena 98.9 2.7E-08 5.8E-13 103.5 13.2 104 158-262 49-158 (667)
58 TIGR00465 ilvC ketol-acid redu 98.9 9.5E-09 2.1E-13 97.7 9.1 91 159-252 1-98 (314)
59 PRK14619 NAD(P)H-dependent gly 98.8 1.3E-08 2.8E-13 96.6 9.7 83 160-251 3-86 (308)
60 PRK05225 ketol-acid reductoiso 98.8 4.2E-09 9.2E-14 103.0 6.4 103 147-253 22-136 (487)
61 PF07991 IlvN: Acetohydroxy ac 98.8 7.2E-09 1.6E-13 88.4 6.5 89 159-250 2-97 (165)
62 PRK07417 arogenate dehydrogena 98.8 3.8E-08 8.2E-13 92.1 11.6 130 163-298 2-143 (279)
63 COG0287 TyrA Prephenate dehydr 98.8 9.1E-08 2E-12 89.5 13.9 131 161-299 3-148 (279)
64 PRK06545 prephenate dehydrogen 98.8 7E-08 1.5E-12 93.6 12.5 129 162-298 1-150 (359)
65 PRK09260 3-hydroxybutyryl-CoA 98.8 5.4E-08 1.2E-12 91.4 10.6 109 162-274 2-141 (288)
66 TIGR00518 alaDH alanine dehydr 98.7 1.7E-08 3.8E-13 98.1 7.3 90 158-247 164-267 (370)
67 PRK07066 3-hydroxybutyryl-CoA 98.7 6.3E-08 1.4E-12 92.3 10.7 100 162-263 8-133 (321)
68 PRK15182 Vi polysaccharide bio 98.7 8.4E-08 1.8E-12 95.0 11.8 128 162-292 7-173 (425)
69 PLN02688 pyrroline-5-carboxyla 98.7 1.7E-07 3.6E-12 86.8 13.1 98 162-263 1-109 (266)
70 PRK08818 prephenate dehydrogen 98.7 2.3E-07 5E-12 90.0 14.4 122 159-295 2-130 (370)
71 PRK11064 wecC UDP-N-acetyl-D-m 98.7 1.5E-07 3.3E-12 92.9 13.3 103 162-264 4-136 (415)
72 PF03807 F420_oxidored: NADP o 98.7 1.3E-08 2.8E-13 79.5 4.5 84 163-249 1-96 (96)
73 PRK11199 tyrA bifunctional cho 98.7 2.6E-07 5.7E-12 90.1 14.5 91 160-260 97-188 (374)
74 COG0499 SAM1 S-adenosylhomocys 98.7 4.8E-08 1E-12 92.4 8.2 97 159-259 207-309 (420)
75 PRK14194 bifunctional 5,10-met 98.7 6.4E-08 1.4E-12 91.0 9.0 131 156-320 154-287 (301)
76 PRK08293 3-hydroxybutyryl-CoA 98.7 3.6E-07 7.8E-12 85.8 13.5 135 162-307 4-169 (287)
77 PRK14189 bifunctional 5,10-met 98.6 1.4E-07 3E-12 88.1 9.1 125 156-315 153-278 (285)
78 cd01080 NAD_bind_m-THF_DH_Cycl 98.6 1.6E-07 3.4E-12 81.5 8.8 115 157-303 40-155 (168)
79 cd01075 NAD_bind_Leu_Phe_Val_D 98.6 3.6E-07 7.9E-12 81.5 11.0 104 156-267 23-134 (200)
80 PRK08507 prephenate dehydrogen 98.6 6E-07 1.3E-11 83.8 12.9 126 163-297 2-143 (275)
81 cd01065 NAD_bind_Shikimate_DH 98.6 3.1E-07 6.7E-12 77.7 9.8 104 158-266 16-133 (155)
82 PRK07530 3-hydroxybutyryl-CoA 98.6 5.3E-07 1.1E-11 84.8 12.3 109 162-275 5-144 (292)
83 PRK05808 3-hydroxybutyryl-CoA 98.6 8.5E-07 1.8E-11 83.0 13.3 99 162-263 4-132 (282)
84 PRK07679 pyrroline-5-carboxyla 98.6 4.4E-07 9.6E-12 84.9 11.0 99 161-263 3-113 (279)
85 PRK12491 pyrroline-5-carboxyla 98.6 1.8E-07 3.9E-12 87.4 7.9 97 162-262 3-110 (272)
86 PRK14188 bifunctional 5,10-met 98.6 3E-07 6.5E-12 86.5 9.2 130 157-315 154-285 (296)
87 PRK14618 NAD(P)H-dependent gly 98.5 4.1E-07 8.9E-12 87.0 10.1 97 161-263 4-123 (328)
88 PRK06035 3-hydroxyacyl-CoA deh 98.5 1.1E-06 2.3E-11 82.8 12.6 112 162-277 4-148 (291)
89 TIGR03026 NDP-sugDHase nucleot 98.5 1.5E-06 3.3E-11 85.7 14.2 130 163-293 2-174 (411)
90 PF01488 Shikimate_DH: Shikima 98.5 8E-08 1.7E-12 80.3 4.2 90 158-250 9-112 (135)
91 PRK13302 putative L-aspartate 98.5 3.3E-07 7.1E-12 85.5 8.6 103 160-267 5-118 (271)
92 PRK07819 3-hydroxybutyryl-CoA 98.5 5.6E-07 1.2E-11 84.6 9.6 111 162-276 6-147 (286)
93 COG1023 Gnd Predicted 6-phosph 98.5 8E-07 1.7E-11 80.0 10.0 111 162-275 1-120 (300)
94 PRK07531 bifunctional 3-hydrox 98.5 1.6E-06 3.4E-11 87.7 13.4 100 162-263 5-130 (495)
95 PRK06129 3-hydroxyacyl-CoA deh 98.5 1.9E-06 4E-11 81.8 13.1 126 162-298 3-159 (308)
96 PRK14806 bifunctional cyclohex 98.5 1.5E-06 3.3E-11 91.8 13.5 130 162-298 4-153 (735)
97 PRK06130 3-hydroxybutyryl-CoA 98.5 1E-06 2.2E-11 83.6 11.0 98 162-262 5-128 (311)
98 PF10727 Rossmann-like: Rossma 98.4 1.9E-07 4.1E-12 77.2 4.3 103 160-266 9-121 (127)
99 PF01210 NAD_Gly3P_dh_N: NAD-d 98.4 4.6E-07 9.9E-12 77.6 6.8 86 163-250 1-106 (157)
100 TIGR00561 pntA NAD(P) transhyd 98.4 3.2E-06 7E-11 85.0 13.6 176 61-248 64-285 (511)
101 KOG1370 S-adenosylhomocysteine 98.4 4.8E-07 1E-11 83.9 6.9 90 158-251 211-305 (434)
102 PRK00094 gpsA NAD(P)H-dependen 98.4 5.9E-07 1.3E-11 85.3 7.8 89 162-252 2-110 (325)
103 PRK14179 bifunctional 5,10-met 98.4 1E-06 2.3E-11 82.2 8.9 129 156-319 153-282 (284)
104 PRK15057 UDP-glucose 6-dehydro 98.4 3.6E-06 7.7E-11 82.5 12.1 121 163-292 2-160 (388)
105 PRK14175 bifunctional 5,10-met 98.4 1.4E-06 3.1E-11 81.4 8.9 122 157-313 154-276 (286)
106 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.4 2E-06 4.4E-11 86.9 10.4 112 162-278 6-148 (503)
107 PRK05472 redox-sensing transcr 98.4 2.4E-07 5.3E-12 83.3 3.3 126 118-263 61-201 (213)
108 PRK08268 3-hydroxy-acyl-CoA de 98.3 1.9E-06 4E-11 87.3 9.5 112 162-278 8-150 (507)
109 PRK07680 late competence prote 98.3 2.1E-06 4.5E-11 80.0 9.0 96 163-262 2-109 (273)
110 PRK06476 pyrroline-5-carboxyla 98.3 1.7E-06 3.6E-11 80.0 8.2 96 163-264 2-108 (258)
111 PRK06928 pyrroline-5-carboxyla 98.3 3.5E-06 7.6E-11 78.8 10.2 98 162-263 2-112 (277)
112 PRK09287 6-phosphogluconate de 98.3 2.3E-06 4.9E-11 85.5 8.9 106 172-278 1-120 (459)
113 COG2085 Predicted dinucleotide 98.3 2.9E-06 6.2E-11 75.5 8.5 85 162-249 2-95 (211)
114 cd05212 NAD_bind_m-THF_DH_Cycl 98.3 1.1E-05 2.3E-10 68.0 10.9 80 156-250 23-103 (140)
115 PF01262 AlaDh_PNT_C: Alanine 98.3 8.6E-07 1.9E-11 76.8 4.4 90 158-247 17-139 (168)
116 TIGR01724 hmd_rel H2-forming N 98.3 1.6E-05 3.4E-10 75.1 13.0 87 173-263 32-129 (341)
117 cd05191 NAD_bind_amino_acid_DH 98.2 8.5E-06 1.8E-10 62.6 8.9 67 157-247 19-86 (86)
118 KOG2380 Prephenate dehydrogena 98.2 1.3E-05 2.8E-10 75.6 11.5 135 161-297 52-192 (480)
119 PF02882 THF_DHG_CYH_C: Tetrah 98.2 6E-06 1.3E-10 71.0 8.5 122 156-311 31-153 (160)
120 TIGR01035 hemA glutamyl-tRNA r 98.2 2E-06 4.4E-11 85.0 6.1 90 158-250 177-280 (417)
121 PRK10792 bifunctional 5,10-met 98.2 1.2E-05 2.5E-10 75.3 10.3 127 156-317 154-281 (285)
122 PLN00203 glutamyl-tRNA reducta 98.2 2.9E-06 6.3E-11 85.8 6.4 89 158-249 263-371 (519)
123 PRK11880 pyrroline-5-carboxyla 98.2 3.5E-05 7.6E-10 71.3 13.1 95 162-262 3-107 (267)
124 COG0059 IlvC Ketol-acid reduct 98.2 5.3E-06 1.2E-10 77.2 7.3 90 158-250 15-111 (338)
125 COG0362 Gnd 6-phosphogluconate 98.1 5.3E-05 1.1E-09 72.9 14.0 158 162-330 4-175 (473)
126 COG0686 Ald Alanine dehydrogen 98.1 2.4E-06 5.3E-11 79.7 4.7 90 158-247 165-268 (371)
127 PTZ00431 pyrroline carboxylate 98.1 1.2E-05 2.5E-10 74.6 9.3 123 161-295 3-129 (260)
128 PRK14192 bifunctional 5,10-met 98.1 1.1E-05 2.5E-10 75.6 9.1 123 156-314 154-277 (283)
129 PRK14178 bifunctional 5,10-met 98.1 7.8E-06 1.7E-10 76.2 7.9 80 156-250 147-227 (279)
130 PRK14191 bifunctional 5,10-met 98.1 9.3E-06 2E-10 75.9 8.2 128 156-318 152-280 (285)
131 cd01079 NAD_bind_m-THF_DH NAD 98.1 2.2E-05 4.8E-10 69.2 9.8 87 154-247 55-156 (197)
132 cd05213 NAD_bind_Glutamyl_tRNA 98.1 8.3E-06 1.8E-10 77.6 7.7 89 159-249 176-275 (311)
133 PRK14176 bifunctional 5,10-met 98.1 1.5E-05 3.4E-10 74.4 8.9 121 156-312 159-280 (287)
134 PRK09424 pntA NAD(P) transhydr 98.1 3.4E-05 7.4E-10 77.8 12.0 177 61-248 65-286 (509)
135 PRK00045 hemA glutamyl-tRNA re 98.1 6.6E-06 1.4E-10 81.5 6.5 88 158-248 179-281 (423)
136 PRK13304 L-aspartate dehydroge 98.1 1.1E-05 2.4E-10 75.0 7.6 100 162-266 2-114 (265)
137 PRK07634 pyrroline-5-carboxyla 98.0 2.7E-05 5.9E-10 71.0 9.7 100 160-264 3-114 (245)
138 cd05311 NAD_bind_2_malic_enz N 98.0 9E-05 2E-09 67.4 12.7 148 157-320 21-196 (226)
139 PF02737 3HCDH_N: 3-hydroxyacy 98.0 9.8E-06 2.1E-10 71.0 6.1 108 163-274 1-138 (180)
140 PRK14190 bifunctional 5,10-met 98.0 3.4E-05 7.4E-10 72.2 9.6 126 156-316 153-279 (284)
141 COG0345 ProC Pyrroline-5-carbo 98.0 3.3E-05 7.2E-10 71.6 9.0 96 162-265 2-111 (266)
142 PRK14183 bifunctional 5,10-met 98.0 3E-05 6.4E-10 72.4 8.6 120 156-310 152-272 (281)
143 PRK14170 bifunctional 5,10-met 98.0 5.1E-05 1.1E-09 70.9 10.1 129 156-319 152-281 (284)
144 PRK14173 bifunctional 5,10-met 98.0 0.00014 3.1E-09 68.1 12.8 134 156-321 150-284 (287)
145 TIGR01915 npdG NADPH-dependent 98.0 2E-05 4.2E-10 71.2 6.9 88 162-252 1-106 (219)
146 PRK08229 2-dehydropantoate 2-r 97.9 4.2E-05 9E-10 73.3 9.4 102 162-267 3-126 (341)
147 PRK14171 bifunctional 5,10-met 97.9 6.1E-05 1.3E-09 70.5 10.1 127 157-318 155-282 (288)
148 PF03721 UDPG_MGDP_dh_N: UDP-g 97.9 1.7E-05 3.7E-10 69.8 5.8 131 162-292 1-171 (185)
149 PRK14177 bifunctional 5,10-met 97.9 4.5E-05 9.8E-10 71.2 8.8 120 156-314 154-274 (284)
150 PRK06522 2-dehydropantoate 2-r 97.9 8.6E-05 1.9E-09 69.7 10.8 102 163-268 2-120 (304)
151 PRK14186 bifunctional 5,10-met 97.9 8.3E-05 1.8E-09 70.0 10.3 131 156-317 153-284 (297)
152 PRK14172 bifunctional 5,10-met 97.9 7.9E-05 1.7E-09 69.5 10.0 116 157-308 154-270 (278)
153 PRK14169 bifunctional 5,10-met 97.9 5.7E-05 1.2E-09 70.6 9.0 127 156-317 151-278 (282)
154 PRK14166 bifunctional 5,10-met 97.9 5.3E-05 1.2E-09 70.8 8.7 123 156-313 152-275 (282)
155 COG0373 HemA Glutamyl-tRNA red 97.9 2.5E-05 5.4E-10 76.5 6.7 89 158-249 175-276 (414)
156 COG0240 GpsA Glycerol-3-phosph 97.9 3.5E-05 7.6E-10 73.1 7.4 90 162-253 2-111 (329)
157 PRK14982 acyl-ACP reductase; P 97.9 4.1E-05 8.9E-10 73.5 7.8 94 155-254 149-253 (340)
158 PRK14180 bifunctional 5,10-met 97.9 6.3E-05 1.4E-09 70.3 8.7 78 156-248 153-231 (282)
159 PRK06141 ornithine cyclodeamin 97.8 7.6E-05 1.6E-09 71.1 9.1 83 160-248 124-220 (314)
160 PRK14187 bifunctional 5,10-met 97.8 7.4E-05 1.6E-09 70.2 8.7 123 156-313 155-281 (294)
161 PLN02616 tetrahydrofolate dehy 97.8 6.9E-05 1.5E-09 71.9 8.5 128 156-313 226-355 (364)
162 TIGR02371 ala_DH_arch alanine 97.8 5.1E-05 1.1E-09 72.7 7.8 82 161-248 128-223 (325)
163 PRK12921 2-dehydropantoate 2-r 97.8 9.6E-05 2.1E-09 69.5 9.4 101 163-267 2-121 (305)
164 PLN02516 methylenetetrahydrofo 97.8 9.2E-05 2E-09 69.7 9.0 135 156-320 162-298 (299)
165 PRK00676 hemA glutamyl-tRNA re 97.8 7.9E-05 1.7E-09 71.4 8.6 90 158-248 171-262 (338)
166 PRK14182 bifunctional 5,10-met 97.8 9.2E-05 2E-09 69.1 8.8 123 157-314 153-276 (282)
167 cd01078 NAD_bind_H4MPT_DH NADP 97.8 5.4E-05 1.2E-09 66.8 7.0 93 156-252 23-134 (194)
168 PRK14193 bifunctional 5,10-met 97.8 9.8E-05 2.1E-09 69.0 9.0 122 156-313 153-277 (284)
169 PRK00258 aroE shikimate 5-dehy 97.8 4.8E-05 1E-09 71.2 6.9 93 158-250 120-224 (278)
170 PRK13940 glutamyl-tRNA reducta 97.8 4.6E-05 1E-09 75.2 7.0 86 158-248 178-274 (414)
171 PLN02897 tetrahydrofolate dehy 97.8 8.4E-05 1.8E-09 71.0 8.4 133 156-317 209-342 (345)
172 TIGR03376 glycerol3P_DH glycer 97.8 9.9E-05 2.1E-09 71.1 8.9 89 163-253 1-122 (342)
173 PRK14181 bifunctional 5,10-met 97.8 0.00012 2.5E-09 68.6 8.9 127 156-312 148-279 (287)
174 PRK12557 H(2)-dependent methyl 97.8 9E-05 2E-09 71.4 8.5 89 173-262 32-132 (342)
175 TIGR01546 GAPDH-II_archae glyc 97.7 7.6E-05 1.7E-09 71.4 7.3 83 164-249 1-110 (333)
176 PRK07340 ornithine cyclodeamin 97.7 8.5E-05 1.8E-09 70.5 7.1 83 160-249 124-219 (304)
177 PRK14168 bifunctional 5,10-met 97.7 0.00016 3.6E-09 68.0 8.5 135 156-319 156-295 (297)
178 PTZ00345 glycerol-3-phosphate 97.7 0.00016 3.6E-09 70.2 8.8 91 162-254 12-136 (365)
179 PRK14174 bifunctional 5,10-met 97.7 0.00017 3.6E-09 67.9 8.5 127 157-313 155-287 (295)
180 PRK06249 2-dehydropantoate 2-r 97.7 0.00095 2.1E-08 63.4 13.9 107 161-271 5-129 (313)
181 PRK14185 bifunctional 5,10-met 97.7 0.00018 3.9E-09 67.5 8.6 128 156-313 152-285 (293)
182 COG0190 FolD 5,10-methylene-te 97.7 0.00062 1.3E-08 63.3 11.9 126 156-316 151-277 (283)
183 TIGR00507 aroE shikimate 5-deh 97.7 0.00025 5.5E-09 66.0 9.5 103 159-266 115-231 (270)
184 PRK14184 bifunctional 5,10-met 97.7 0.00015 3.4E-09 67.8 7.8 78 156-248 152-234 (286)
185 TIGR02992 ectoine_eutC ectoine 97.6 0.00018 3.9E-09 68.9 8.3 83 160-248 128-225 (326)
186 TIGR02354 thiF_fam2 thiamine b 97.6 0.00029 6.2E-09 62.9 8.8 88 157-245 17-143 (200)
187 PRK08618 ornithine cyclodeamin 97.6 0.00017 3.7E-09 69.1 7.7 82 160-248 126-222 (325)
188 PRK14167 bifunctional 5,10-met 97.6 0.00033 7.1E-09 66.0 8.9 127 156-313 152-284 (297)
189 PF13380 CoA_binding_2: CoA bi 97.6 0.00074 1.6E-08 54.9 9.8 99 162-267 1-104 (116)
190 PF02153 PDH: Prephenate dehyd 97.6 0.0006 1.3E-08 63.1 10.4 118 176-297 1-133 (258)
191 PRK06823 ornithine cyclodeamin 97.5 0.00025 5.5E-09 67.6 7.8 82 161-248 128-223 (315)
192 PF02423 OCD_Mu_crystall: Orni 97.5 0.00014 3E-09 69.3 5.9 86 162-251 129-228 (313)
193 cd01076 NAD_bind_1_Glu_DH NAD( 97.5 0.0029 6.2E-08 57.6 14.1 103 157-267 27-154 (227)
194 COG0677 WecC UDP-N-acetyl-D-ma 97.5 0.00088 1.9E-08 64.8 11.1 137 162-306 10-190 (436)
195 PLN02353 probable UDP-glucose 97.5 0.0024 5.2E-08 64.3 14.7 128 162-292 2-176 (473)
196 KOG2653 6-phosphogluconate deh 97.5 0.002 4.3E-08 61.5 13.1 157 162-328 7-177 (487)
197 PRK12439 NAD(P)H-dependent gly 97.5 0.0004 8.6E-09 67.0 8.7 86 162-250 8-114 (341)
198 PRK06046 alanine dehydrogenase 97.5 0.00036 7.7E-09 66.9 8.0 81 161-248 129-224 (326)
199 PRK11730 fadB multifunctional 97.5 0.00074 1.6E-08 71.3 11.0 110 162-275 314-453 (715)
200 PRK14620 NAD(P)H-dependent gly 97.5 0.00051 1.1E-08 65.5 8.9 86 163-250 2-109 (326)
201 PRK12549 shikimate 5-dehydroge 97.5 0.00039 8.5E-09 65.3 7.9 64 159-222 125-203 (284)
202 PRK08291 ectoine utilization p 97.5 0.0003 6.6E-09 67.5 7.2 81 160-246 131-226 (330)
203 PRK06444 prephenate dehydrogen 97.4 0.00046 9.9E-09 61.4 7.6 61 163-251 2-63 (197)
204 COG2423 Predicted ornithine cy 97.4 0.00047 1E-08 66.0 8.1 81 162-248 131-226 (330)
205 COG1748 LYS9 Saccharopine dehy 97.4 0.0005 1.1E-08 67.0 7.8 83 162-250 2-102 (389)
206 PRK09310 aroDE bifunctional 3- 97.4 0.00061 1.3E-08 68.6 8.8 68 156-223 327-402 (477)
207 PF13241 NAD_binding_7: Putati 97.4 0.00012 2.6E-09 58.2 2.7 84 158-247 4-91 (103)
208 PRK06199 ornithine cyclodeamin 97.4 0.00051 1.1E-08 67.2 7.7 85 161-248 155-260 (379)
209 PRK06407 ornithine cyclodeamin 97.4 0.00059 1.3E-08 64.7 7.7 82 161-248 117-213 (301)
210 TIGR01470 cysG_Nterm siroheme 97.3 0.00043 9.4E-09 62.0 6.0 89 154-247 2-100 (205)
211 TIGR01921 DAP-DH diaminopimela 97.3 0.00072 1.6E-08 64.5 7.6 101 162-267 4-115 (324)
212 PLN02477 glutamate dehydrogena 97.3 0.0045 9.6E-08 61.1 13.3 104 156-267 201-329 (410)
213 PTZ00117 malate dehydrogenase; 97.3 0.0015 3.2E-08 62.5 9.7 113 159-272 3-151 (319)
214 cd05211 NAD_bind_Glu_Leu_Phe_V 97.3 0.0027 5.8E-08 57.4 10.9 103 157-267 19-145 (217)
215 PRK06718 precorrin-2 dehydroge 97.3 0.00068 1.5E-08 60.5 6.9 69 154-222 3-81 (202)
216 cd05313 NAD_bind_2_Glu_DH NAD( 97.3 0.0063 1.4E-07 56.2 13.2 104 157-267 34-172 (254)
217 TIGR02440 FadJ fatty oxidation 97.3 0.0019 4.2E-08 68.1 11.1 110 162-275 305-445 (699)
218 TIGR02441 fa_ox_alpha_mit fatt 97.2 0.0015 3.2E-08 69.3 9.9 110 162-275 336-475 (737)
219 PRK11154 fadJ multifunctional 97.2 0.002 4.3E-08 68.1 10.8 110 162-275 310-450 (708)
220 COG1250 FadB 3-hydroxyacyl-CoA 97.2 0.0029 6.3E-08 59.9 10.8 129 161-298 3-161 (307)
221 smart00859 Semialdhyde_dh Semi 97.2 0.0012 2.7E-08 53.6 7.2 84 163-248 1-100 (122)
222 TIGR02437 FadB fatty oxidation 97.2 0.0023 5E-08 67.6 10.9 110 162-275 314-453 (714)
223 PRK07589 ornithine cyclodeamin 97.2 0.0011 2.3E-08 64.1 7.6 83 161-247 129-225 (346)
224 PF01408 GFO_IDH_MocA: Oxidore 97.2 0.00069 1.5E-08 54.5 5.1 99 163-265 2-113 (120)
225 PRK13301 putative L-aspartate 97.0 0.0024 5.3E-08 59.1 8.0 98 162-264 3-113 (267)
226 PRK13303 L-aspartate dehydroge 97.0 0.0025 5.3E-08 59.3 8.2 100 162-266 2-114 (265)
227 TIGR01763 MalateDH_bact malate 97.0 0.0028 6.1E-08 60.2 8.7 110 162-272 2-147 (305)
228 TIGR01809 Shik-DH-AROM shikima 97.0 0.00097 2.1E-08 62.6 5.5 64 159-222 123-201 (282)
229 COG1712 Predicted dinucleotide 97.0 0.0017 3.6E-08 58.5 6.5 91 163-258 2-102 (255)
230 PRK06719 precorrin-2 dehydroge 97.0 0.0017 3.8E-08 55.6 6.5 68 153-220 5-79 (157)
231 cd00650 LDH_MDH_like NAD-depen 96.9 0.0025 5.4E-08 59.1 7.2 111 164-274 1-149 (263)
232 PF01113 DapB_N: Dihydrodipico 96.9 0.0063 1.4E-07 49.9 8.8 96 163-263 2-114 (124)
233 COG0026 PurK Phosphoribosylami 96.9 0.0018 3.8E-08 62.3 6.1 57 161-217 1-68 (375)
234 KOG2304 3-hydroxyacyl-CoA dehy 96.9 0.00041 8.9E-09 62.3 1.7 137 159-304 9-181 (298)
235 PF01118 Semialdhyde_dh: Semia 96.9 0.0018 3.9E-08 52.8 5.5 83 163-250 1-100 (121)
236 PRK14031 glutamate dehydrogena 96.9 0.0072 1.6E-07 60.1 10.6 105 156-267 223-361 (444)
237 COG0771 MurD UDP-N-acetylmuram 96.9 0.0045 9.7E-08 61.6 9.1 119 159-278 5-157 (448)
238 PRK09414 glutamate dehydrogena 96.9 0.0072 1.6E-07 60.2 10.5 105 156-267 227-362 (445)
239 COG1064 AdhP Zn-dependent alco 96.9 0.0021 4.5E-08 61.6 6.3 37 160-196 166-202 (339)
240 PRK08306 dipicolinate synthase 96.8 0.012 2.5E-07 55.8 11.0 103 160-267 1-116 (296)
241 PRK01710 murD UDP-N-acetylmura 96.8 0.0065 1.4E-07 60.8 9.7 106 159-265 12-143 (458)
242 PRK12548 shikimate 5-dehydroge 96.8 0.0028 6.1E-08 59.7 6.7 37 158-194 123-160 (289)
243 TIGR02356 adenyl_thiF thiazole 96.8 0.0037 8.1E-08 55.7 7.0 79 157-236 17-135 (202)
244 PTZ00082 L-lactate dehydrogena 96.7 0.0055 1.2E-07 58.6 8.0 60 159-219 4-82 (321)
245 PRK00048 dihydrodipicolinate r 96.7 0.0085 1.8E-07 55.5 8.9 61 162-222 2-71 (257)
246 COG5322 Predicted dehydrogenas 96.6 0.0044 9.5E-08 57.1 6.3 96 155-255 161-269 (351)
247 cd05291 HicDH_like L-2-hydroxy 96.6 0.0092 2E-07 56.6 8.6 86 162-247 1-117 (306)
248 PRK06223 malate dehydrogenase; 96.6 0.01 2.2E-07 56.2 8.8 57 162-219 3-78 (307)
249 COG0334 GdhA Glutamate dehydro 96.6 0.0088 1.9E-07 58.4 8.3 103 156-266 202-330 (411)
250 COG0169 AroE Shikimate 5-dehyd 96.6 0.0061 1.3E-07 57.2 7.1 104 157-264 122-242 (283)
251 KOG0023 Alcohol dehydrogenase, 96.6 0.0034 7.3E-08 59.3 5.2 36 160-195 181-216 (360)
252 PRK12475 thiamine/molybdopteri 96.6 0.0076 1.6E-07 58.1 7.8 37 157-193 20-57 (338)
253 PLN02968 Probable N-acetyl-gam 96.5 0.0047 1E-07 60.4 6.3 94 160-259 37-146 (381)
254 PF00185 OTCace: Aspartate/orn 96.5 0.011 2.4E-07 50.6 7.9 88 160-247 1-120 (158)
255 COG0569 TrkA K+ transport syst 96.5 0.0036 7.7E-08 56.9 4.7 62 162-223 1-78 (225)
256 TIGR02964 xanthine_xdhC xanthi 96.5 0.015 3.3E-07 53.5 8.9 92 162-270 101-192 (246)
257 PF00208 ELFV_dehydrog: Glutam 96.5 0.0075 1.6E-07 55.5 6.8 103 158-267 29-165 (244)
258 PRK14030 glutamate dehydrogena 96.5 0.019 4.2E-07 57.1 10.0 154 156-319 223-411 (445)
259 cd00757 ThiF_MoeB_HesA_family 96.5 0.008 1.7E-07 54.6 6.8 146 157-323 17-206 (228)
260 PF02558 ApbA: Ketopantoate re 96.4 0.0052 1.1E-07 51.6 5.0 104 164-270 1-123 (151)
261 PF03720 UDPG_MGDP_dh_C: UDP-g 96.4 0.0096 2.1E-07 47.4 6.1 74 172-246 18-100 (106)
262 cd01339 LDH-like_MDH L-lactate 96.4 0.01 2.2E-07 56.1 7.2 55 164-219 1-74 (300)
263 COG1004 Ugd Predicted UDP-gluc 96.4 0.024 5.2E-07 55.2 9.6 144 162-310 1-183 (414)
264 PF13478 XdhC_C: XdhC Rossmann 96.3 0.0077 1.7E-07 50.4 5.5 86 164-271 1-86 (136)
265 TIGR03026 NDP-sugDHase nucleot 96.3 0.022 4.7E-07 56.3 9.5 86 158-246 310-409 (411)
266 PRK00683 murD UDP-N-acetylmura 96.3 0.01 2.2E-07 58.7 7.3 104 161-264 3-127 (418)
267 TIGR01850 argC N-acetyl-gamma- 96.3 0.015 3.3E-07 56.2 8.2 88 162-254 1-106 (346)
268 PRK00856 pyrB aspartate carbam 96.3 0.026 5.6E-07 53.7 9.5 60 159-218 154-220 (305)
269 TIGR02717 AcCoA-syn-alpha acet 96.3 0.051 1.1E-06 54.4 12.1 108 159-269 5-125 (447)
270 PRK00066 ldh L-lactate dehydro 96.3 0.011 2.3E-07 56.5 6.9 61 160-220 5-82 (315)
271 PRK12749 quinate/shikimate deh 96.3 0.014 3E-07 55.0 7.6 38 158-195 121-159 (288)
272 cd05312 NAD_bind_1_malic_enz N 96.3 0.08 1.7E-06 49.5 12.5 179 120-322 4-224 (279)
273 cd00762 NAD_bind_malic_enz NAD 96.3 0.08 1.7E-06 48.8 12.2 175 120-320 4-223 (254)
274 COG1648 CysG Siroheme synthase 96.3 0.0071 1.5E-07 54.4 5.2 89 153-247 4-103 (210)
275 PLN02520 bifunctional 3-dehydr 96.3 0.0092 2E-07 61.0 6.6 39 157-195 375-413 (529)
276 PRK01713 ornithine carbamoyltr 96.2 0.097 2.1E-06 50.4 13.3 89 158-246 153-274 (334)
277 PRK06019 phosphoribosylaminoim 96.2 0.0096 2.1E-07 58.0 6.4 57 161-217 2-69 (372)
278 PRK05708 2-dehydropantoate 2-r 96.2 0.023 5E-07 53.8 8.7 107 162-271 3-127 (305)
279 PRK14106 murD UDP-N-acetylmura 96.2 0.033 7.2E-07 55.4 10.2 107 158-264 2-133 (450)
280 cd05297 GH4_alpha_glucosidase_ 96.2 0.0063 1.4E-07 60.4 4.8 59 163-221 2-84 (423)
281 PTZ00079 NADP-specific glutama 96.2 0.05 1.1E-06 54.2 11.0 105 156-267 232-371 (454)
282 PRK05690 molybdopterin biosynt 96.1 0.011 2.3E-07 54.4 5.9 79 157-236 28-146 (245)
283 TIGR02355 moeB molybdopterin s 96.1 0.018 4E-07 52.8 7.2 78 157-235 20-137 (240)
284 PRK10637 cysG siroheme synthas 96.1 0.011 2.4E-07 59.2 6.2 90 153-247 4-103 (457)
285 PF13460 NAD_binding_10: NADH( 96.1 0.0093 2E-07 51.3 4.9 60 164-223 1-72 (183)
286 PRK00779 ornithine carbamoyltr 96.1 0.15 3.2E-06 48.5 13.4 88 159-246 150-264 (304)
287 PRK02255 putrescine carbamoylt 96.0 0.16 3.6E-06 48.9 13.6 89 158-246 151-271 (338)
288 PF00056 Ldh_1_N: lactate/mala 96.0 0.006 1.3E-07 51.3 3.2 58 162-219 1-77 (141)
289 PRK08269 3-hydroxybutyryl-CoA 96.0 0.091 2E-06 50.1 11.7 89 172-262 1-128 (314)
290 PRK07232 bifunctional malic en 96.0 0.14 3.1E-06 54.3 13.8 176 105-319 152-352 (752)
291 KOG2711 Glycerol-3-phosphate d 96.0 0.035 7.6E-07 52.9 8.4 91 159-251 19-143 (372)
292 PF03435 Saccharop_dh: Sacchar 95.9 0.0064 1.4E-07 59.4 3.7 79 164-247 1-98 (386)
293 PRK08644 thiamine biosynthesis 95.9 0.041 8.8E-07 49.5 8.5 37 157-193 24-61 (212)
294 PRK07688 thiamine/molybdopteri 95.9 0.025 5.4E-07 54.6 7.5 37 157-193 20-57 (339)
295 TIGR03316 ygeW probable carbam 95.9 0.15 3.2E-06 49.6 12.8 61 158-218 167-252 (357)
296 PRK09496 trkA potassium transp 95.9 0.018 4E-07 57.1 6.8 63 162-224 1-78 (453)
297 PRK12861 malic enzyme; Reviewe 95.9 0.12 2.5E-06 54.9 12.9 176 106-320 157-357 (764)
298 TIGR00658 orni_carb_tr ornithi 95.9 0.19 4.2E-06 47.7 13.3 88 159-246 146-263 (304)
299 PRK12862 malic enzyme; Reviewe 95.9 0.18 4E-06 53.6 14.2 175 106-319 161-360 (763)
300 PRK11891 aspartate carbamoyltr 95.9 0.18 3.8E-06 50.1 13.3 89 158-246 238-354 (429)
301 PRK08223 hypothetical protein; 95.8 0.038 8.2E-07 52.0 8.2 79 157-235 23-142 (287)
302 PLN02342 ornithine carbamoyltr 95.8 0.22 4.8E-06 48.2 13.7 89 158-246 191-306 (348)
303 PRK04207 glyceraldehyde-3-phos 95.8 0.035 7.5E-07 53.6 8.1 61 162-222 2-89 (341)
304 PRK02472 murD UDP-N-acetylmura 95.8 0.086 1.9E-06 52.4 11.2 108 158-265 2-134 (447)
305 PRK02102 ornithine carbamoyltr 95.8 0.15 3.3E-06 49.0 12.3 88 159-246 153-272 (331)
306 PF02254 TrkA_N: TrkA-N domain 95.8 0.013 2.8E-07 46.8 4.2 79 164-244 1-93 (116)
307 cd05292 LDH_2 A subgroup of L- 95.8 0.022 4.8E-07 54.1 6.5 58 163-221 2-77 (308)
308 PRK11579 putative oxidoreducta 95.8 0.02 4.4E-07 55.0 6.3 62 162-223 5-76 (346)
309 PRK00436 argC N-acetyl-gamma-g 95.7 0.027 5.8E-07 54.4 6.9 88 162-254 3-106 (343)
310 PRK01390 murD UDP-N-acetylmura 95.7 0.062 1.3E-06 53.7 9.8 107 158-264 6-139 (460)
311 PLN02353 probable UDP-glucose 95.7 0.061 1.3E-06 54.2 9.4 97 158-258 321-456 (473)
312 COG2344 AT-rich DNA-binding pr 95.7 0.011 2.4E-07 51.8 3.5 101 162-262 85-200 (211)
313 cd01486 Apg7 Apg7 is an E1-lik 95.6 0.048 1E-06 51.5 7.8 81 163-247 1-140 (307)
314 PRK08328 hypothetical protein; 95.6 0.047 1E-06 49.7 7.6 37 157-193 23-60 (231)
315 PRK03369 murD UDP-N-acetylmura 95.6 0.025 5.4E-07 57.2 6.3 105 159-264 10-142 (488)
316 TIGR00670 asp_carb_tr aspartat 95.6 0.11 2.4E-06 49.2 10.3 88 158-246 147-262 (301)
317 PRK14027 quinate/shikimate deh 95.6 0.021 4.5E-07 53.7 5.3 64 159-222 125-205 (283)
318 PRK03515 ornithine carbamoyltr 95.5 0.16 3.4E-06 49.0 11.3 61 158-218 153-232 (336)
319 TIGR02853 spore_dpaA dipicolin 95.5 0.14 3.1E-06 48.2 10.8 108 161-275 1-121 (287)
320 COG3288 PntA NAD/NADP transhyd 95.5 0.026 5.6E-07 53.1 5.6 91 156-247 159-281 (356)
321 PRK04284 ornithine carbamoyltr 95.5 0.21 4.5E-06 48.1 12.0 88 159-246 153-273 (332)
322 PF02629 CoA_binding: CoA bind 95.5 0.051 1.1E-06 42.4 6.4 62 161-222 3-73 (96)
323 PRK05562 precorrin-2 dehydroge 95.5 0.028 6.1E-07 51.0 5.6 68 153-220 17-94 (223)
324 PLN02527 aspartate carbamoyltr 95.4 0.1 2.2E-06 49.7 9.6 88 159-246 149-265 (306)
325 PRK08762 molybdopterin biosynt 95.4 0.039 8.5E-07 53.9 6.8 37 157-193 131-168 (376)
326 cd05293 LDH_1 A subgroup of L- 95.4 0.042 9E-07 52.4 6.8 85 162-247 4-120 (312)
327 PLN02819 lysine-ketoglutarate 95.4 0.034 7.3E-07 60.8 6.8 63 160-222 568-659 (1042)
328 PRK07411 hypothetical protein; 95.4 0.046 1E-06 53.7 7.2 82 157-239 34-155 (390)
329 PLN02948 phosphoribosylaminoim 95.3 0.043 9.3E-07 56.7 7.2 65 157-221 18-93 (577)
330 PRK05600 thiamine biosynthesis 95.3 0.029 6.2E-07 54.8 5.6 78 157-235 37-154 (370)
331 PRK08265 short chain dehydroge 95.3 0.043 9.3E-07 50.2 6.5 38 158-195 3-41 (261)
332 cd01487 E1_ThiF_like E1_ThiF_l 95.3 0.065 1.4E-06 46.6 7.2 31 163-193 1-32 (174)
333 PRK06270 homoserine dehydrogen 95.3 0.085 1.8E-06 50.9 8.7 105 162-266 3-145 (341)
334 COG1893 ApbA Ketopantoate redu 95.3 0.2 4.2E-06 47.7 11.0 135 162-300 1-154 (307)
335 PRK10669 putative cation:proto 95.3 0.025 5.4E-07 58.1 5.2 68 162-229 418-499 (558)
336 PRK05086 malate dehydrogenase; 95.2 0.099 2.1E-06 49.8 8.9 88 162-249 1-120 (312)
337 PRK09496 trkA potassium transp 95.2 0.05 1.1E-06 54.0 7.2 86 159-246 229-330 (453)
338 PRK13814 pyrB aspartate carbam 95.2 0.099 2.1E-06 49.8 8.7 59 159-217 155-223 (310)
339 PRK11064 wecC UDP-N-acetyl-D-m 95.2 0.07 1.5E-06 52.9 7.8 67 156-222 315-397 (415)
340 PRK05678 succinyl-CoA syntheta 95.2 0.25 5.3E-06 46.7 11.1 106 161-269 8-120 (291)
341 PRK05597 molybdopterin biosynt 95.1 0.054 1.2E-06 52.6 6.9 37 157-193 24-61 (355)
342 cd00755 YgdL_like Family of ac 95.1 0.25 5.5E-06 45.0 10.8 119 158-279 8-184 (231)
343 PRK06349 homoserine dehydrogen 95.1 0.087 1.9E-06 52.4 8.4 101 162-266 4-124 (426)
344 cd00300 LDH_like L-lactate deh 95.1 0.089 1.9E-06 49.8 8.1 83 164-247 1-115 (300)
345 COG1004 Ugd Predicted UDP-gluc 95.1 0.089 1.9E-06 51.3 8.1 83 159-245 308-406 (414)
346 COG0281 SfcA Malic enzyme [Ene 95.1 0.75 1.6E-05 45.3 14.4 178 105-320 166-370 (432)
347 cd05188 MDR Medium chain reduc 95.1 0.15 3.2E-06 45.9 9.2 86 160-250 134-235 (271)
348 PF03447 NAD_binding_3: Homose 95.1 0.019 4.2E-07 46.2 2.9 92 168-264 1-110 (117)
349 TIGR00036 dapB dihydrodipicoli 95.0 0.13 2.8E-06 47.9 8.7 60 162-221 2-78 (266)
350 TIGR01161 purK phosphoribosyla 95.0 0.048 1E-06 52.5 6.1 55 163-217 1-66 (352)
351 PRK07878 molybdopterin biosynt 95.0 0.071 1.5E-06 52.4 7.3 79 157-236 38-156 (392)
352 PLN02383 aspartate semialdehyd 95.0 0.091 2E-06 50.8 7.8 83 160-247 6-100 (344)
353 PRK05786 fabG 3-ketoacyl-(acyl 95.0 0.062 1.4E-06 48.0 6.3 38 158-195 2-40 (238)
354 PRK02006 murD UDP-N-acetylmura 95.0 0.065 1.4E-06 54.3 7.1 108 159-266 5-148 (498)
355 PRK14874 aspartate-semialdehyd 94.9 0.068 1.5E-06 51.4 6.7 83 161-248 1-95 (334)
356 cd01492 Aos1_SUMO Ubiquitin ac 94.9 0.12 2.7E-06 45.8 7.9 37 157-193 17-54 (197)
357 PRK03659 glutathione-regulated 94.9 0.04 8.7E-07 57.2 5.5 85 161-247 400-498 (601)
358 PRK00421 murC UDP-N-acetylmura 94.9 0.083 1.8E-06 52.9 7.5 107 159-265 5-133 (461)
359 PRK15182 Vi polysaccharide bio 94.8 0.18 3.9E-06 50.2 9.6 94 156-252 309-417 (425)
360 PRK00141 murD UDP-N-acetylmura 94.8 0.058 1.3E-06 54.3 6.3 108 158-265 12-147 (473)
361 PRK09880 L-idonate 5-dehydroge 94.8 0.086 1.9E-06 50.3 7.1 84 160-248 169-267 (343)
362 PLN02602 lactate dehydrogenase 94.8 0.082 1.8E-06 51.2 6.9 85 162-247 38-154 (350)
363 PRK04690 murD UDP-N-acetylmura 94.8 0.071 1.5E-06 53.6 6.8 107 159-265 6-141 (468)
364 PLN00106 malate dehydrogenase 94.7 0.091 2E-06 50.4 7.0 91 160-250 17-138 (323)
365 COG0078 ArgF Ornithine carbamo 94.7 0.54 1.2E-05 44.3 11.7 88 159-246 151-269 (310)
366 PRK07877 hypothetical protein; 94.7 0.12 2.7E-06 54.5 8.4 77 158-236 104-220 (722)
367 TIGR01202 bchC 2-desacetyl-2-h 94.7 0.082 1.8E-06 49.8 6.5 83 160-247 144-231 (308)
368 COG0673 MviM Predicted dehydro 94.6 0.063 1.4E-06 51.0 5.8 64 161-224 3-80 (342)
369 PRK08300 acetaldehyde dehydrog 94.6 0.12 2.6E-06 49.0 7.4 92 161-257 4-118 (302)
370 PF05368 NmrA: NmrA-like famil 94.6 0.041 8.9E-07 49.4 4.2 74 164-237 1-95 (233)
371 COG2910 Putative NADH-flavin r 94.6 0.077 1.7E-06 46.6 5.6 60 162-221 1-72 (211)
372 cd08230 glucose_DH Glucose deh 94.6 0.095 2.1E-06 50.3 6.9 84 160-248 172-270 (355)
373 PRK12550 shikimate 5-dehydroge 94.6 0.04 8.7E-07 51.5 4.1 62 161-222 122-189 (272)
374 PRK11863 N-acetyl-gamma-glutam 94.6 0.12 2.5E-06 49.4 7.3 77 162-247 3-81 (313)
375 PRK01438 murD UDP-N-acetylmura 94.5 0.26 5.6E-06 49.5 10.0 108 156-264 11-147 (480)
376 PTZ00325 malate dehydrogenase; 94.4 0.11 2.3E-06 49.8 6.8 62 159-220 6-85 (321)
377 TIGR01019 sucCoAalpha succinyl 94.4 0.51 1.1E-05 44.5 11.2 104 161-267 6-116 (286)
378 cd05290 LDH_3 A subgroup of L- 94.4 0.095 2.1E-06 49.9 6.3 58 163-220 1-77 (307)
379 PLN02586 probable cinnamyl alc 94.3 0.17 3.7E-06 48.9 7.9 84 160-248 183-279 (360)
380 PF00070 Pyr_redox: Pyridine n 94.3 0.089 1.9E-06 39.3 4.7 34 163-196 1-34 (80)
381 PRK03562 glutathione-regulated 94.3 0.045 9.7E-07 57.1 4.1 82 161-244 400-495 (621)
382 TIGR01772 MDH_euk_gproteo mala 94.3 0.24 5.2E-06 47.2 8.8 86 163-248 1-117 (312)
383 PRK14804 ornithine carbamoyltr 94.3 0.56 1.2E-05 44.7 11.2 61 158-218 150-225 (311)
384 PF00899 ThiF: ThiF family; I 94.2 0.051 1.1E-06 44.9 3.6 33 161-193 2-35 (135)
385 CHL00194 ycf39 Ycf39; Provisio 94.2 0.088 1.9E-06 49.8 5.7 59 162-220 1-73 (317)
386 TIGR03649 ergot_EASG ergot alk 94.2 0.11 2.4E-06 48.0 6.3 60 163-222 1-78 (285)
387 PF04016 DUF364: Domain of unk 94.2 0.081 1.8E-06 44.8 4.9 80 159-247 9-95 (147)
388 TIGR03366 HpnZ_proposed putati 94.1 0.13 2.8E-06 47.7 6.6 36 160-195 120-156 (280)
389 PRK08192 aspartate carbamoyltr 94.1 0.31 6.8E-06 47.0 9.2 61 158-218 156-233 (338)
390 PRK06182 short chain dehydroge 94.1 0.095 2.1E-06 48.1 5.5 36 160-195 2-38 (273)
391 PF05222 AlaDh_PNT_N: Alanine 94.0 0.42 9.2E-06 39.9 8.8 92 175-276 18-119 (136)
392 TIGR01771 L-LDH-NAD L-lactate 94.0 0.17 3.7E-06 47.9 7.2 82 166-247 1-113 (299)
393 TIGR03215 ac_ald_DH_ac acetald 94.0 0.23 5.1E-06 46.7 7.9 80 162-246 2-94 (285)
394 PRK04148 hypothetical protein; 93.9 0.097 2.1E-06 43.6 4.6 62 160-222 16-88 (134)
395 PF03949 Malic_M: Malic enzyme 93.9 0.2 4.4E-06 46.2 7.1 122 120-265 4-159 (255)
396 PRK14851 hypothetical protein; 93.7 0.17 3.7E-06 53.2 7.2 159 157-323 39-256 (679)
397 PRK01368 murD UDP-N-acetylmura 93.7 0.18 4E-06 50.5 7.1 104 160-264 5-129 (454)
398 PRK06392 homoserine dehydrogen 93.7 0.31 6.8E-06 46.7 8.4 102 163-265 2-135 (326)
399 TIGR01851 argC_other N-acetyl- 93.7 0.24 5.2E-06 47.1 7.5 76 163-247 3-80 (310)
400 cd01338 MDH_choloroplast_like 93.6 0.2 4.4E-06 48.0 7.0 95 162-258 3-137 (322)
401 cd05294 LDH-like_MDH_nadp A la 93.6 0.31 6.8E-06 46.3 8.2 58 162-220 1-81 (309)
402 PRK06398 aldose dehydrogenase; 93.6 0.18 3.8E-06 46.1 6.3 38 158-195 3-41 (258)
403 PRK10206 putative oxidoreducta 93.6 0.13 2.7E-06 49.7 5.5 62 163-224 3-77 (344)
404 PRK12562 ornithine carbamoyltr 93.5 0.9 2E-05 43.7 11.2 89 158-246 153-274 (334)
405 PRK08040 putative semialdehyde 93.5 0.22 4.8E-06 48.0 7.0 83 160-247 3-97 (336)
406 PLN02819 lysine-ketoglutarate 93.4 0.087 1.9E-06 57.7 4.5 89 159-247 201-338 (1042)
407 PLN02214 cinnamoyl-CoA reducta 93.4 0.24 5.1E-06 47.5 7.1 62 159-220 8-90 (342)
408 cd01336 MDH_cytoplasmic_cytoso 93.4 0.23 4.9E-06 47.6 6.8 58 163-220 4-87 (325)
409 PRK06523 short chain dehydroge 93.3 0.15 3.2E-06 46.3 5.3 39 157-195 5-44 (260)
410 TIGR01759 MalateDH-SF1 malate 93.2 0.28 6.1E-06 47.0 7.2 59 162-220 4-88 (323)
411 PRK06728 aspartate-semialdehyd 93.2 0.3 6.5E-06 47.3 7.4 81 161-247 5-99 (347)
412 TIGR01761 thiaz-red thiazoliny 93.2 0.22 4.8E-06 48.1 6.5 103 162-269 4-119 (343)
413 cd08237 ribitol-5-phosphate_DH 93.2 0.37 8E-06 46.1 8.1 87 160-248 163-257 (341)
414 COG4007 Predicted dehydrogenas 93.2 0.28 6E-06 45.3 6.6 85 173-261 33-128 (340)
415 PRK13376 pyrB bifunctional asp 93.2 0.44 9.5E-06 48.6 8.8 89 158-246 171-292 (525)
416 PRK07523 gluconate 5-dehydroge 93.2 0.24 5.2E-06 44.8 6.5 38 158-195 7-45 (255)
417 COG1063 Tdh Threonine dehydrog 93.1 0.32 6.9E-06 47.0 7.5 82 163-249 171-271 (350)
418 PLN02662 cinnamyl-alcohol dehy 93.1 0.29 6.2E-06 45.9 7.1 61 160-220 3-85 (322)
419 PLN00141 Tic62-NAD(P)-related 93.1 0.19 4.1E-06 45.7 5.7 64 158-221 14-95 (251)
420 KOG4230 C1-tetrahydrofolate sy 93.1 0.96 2.1E-05 46.2 10.8 137 157-322 158-295 (935)
421 TIGR02822 adh_fam_2 zinc-bindi 93.0 0.26 5.7E-06 46.9 6.8 84 160-248 165-255 (329)
422 PLN02896 cinnamyl-alcohol dehy 93.0 0.25 5.4E-06 47.4 6.6 65 156-220 5-88 (353)
423 PLN02514 cinnamyl-alcohol dehy 93.0 0.28 6E-06 47.3 6.9 84 160-248 180-276 (357)
424 TIGR01087 murD UDP-N-acetylmur 93.0 0.74 1.6E-05 45.6 10.1 102 163-265 1-128 (433)
425 cd00704 MDH Malate dehydrogena 92.9 0.28 6.1E-06 47.0 6.8 94 163-258 2-135 (323)
426 PRK08628 short chain dehydroge 92.9 0.34 7.3E-06 43.9 7.0 38 158-195 4-42 (258)
427 PLN02657 3,8-divinyl protochlo 92.9 0.22 4.8E-06 48.8 6.1 39 156-194 55-94 (390)
428 PLN02178 cinnamyl-alcohol dehy 92.9 0.3 6.5E-06 47.5 7.0 34 160-193 178-211 (375)
429 cd05283 CAD1 Cinnamyl alcohol 92.9 0.36 7.8E-06 45.8 7.5 84 160-248 169-264 (337)
430 TIGR01532 E4PD_g-proteo D-eryt 92.9 0.25 5.4E-06 47.4 6.3 29 163-191 1-33 (325)
431 PRK08374 homoserine dehydrogen 92.8 0.46 1E-05 45.8 8.0 113 162-279 3-156 (336)
432 PRK08324 short chain dehydroge 92.8 0.21 4.5E-06 52.7 6.1 39 157-195 418-457 (681)
433 PRK05442 malate dehydrogenase; 92.7 0.33 7.1E-06 46.6 6.9 93 162-256 5-137 (326)
434 PLN02695 GDP-D-mannose-3',5'-e 92.7 0.25 5.4E-06 48.0 6.2 60 160-219 20-93 (370)
435 TIGR01296 asd_B aspartate-semi 92.6 0.28 6.1E-06 47.3 6.4 80 163-247 1-92 (339)
436 PRK07856 short chain dehydroge 92.6 0.19 4E-06 45.6 4.9 37 158-194 3-40 (252)
437 cd08239 THR_DH_like L-threonin 92.6 0.26 5.6E-06 46.7 6.1 36 160-195 163-199 (339)
438 cd08245 CAD Cinnamyl alcohol d 92.6 0.42 9.1E-06 44.9 7.4 84 160-248 162-257 (330)
439 TIGR03466 HpnA hopanoid-associ 92.6 0.22 4.8E-06 46.6 5.5 59 162-220 1-73 (328)
440 COG0039 Mdh Malate/lactate deh 92.6 0.34 7.5E-06 46.1 6.7 62 162-223 1-83 (313)
441 PLN03209 translocon at the inn 92.5 0.21 4.7E-06 51.3 5.6 62 159-220 78-168 (576)
442 PRK06196 oxidoreductase; Provi 92.5 0.37 8E-06 45.5 6.9 38 158-195 23-61 (315)
443 PRK15076 alpha-galactosidase; 92.5 0.13 2.9E-06 51.2 4.0 60 162-221 2-85 (431)
444 TIGR01758 MDH_euk_cyt malate d 92.5 0.31 6.7E-06 46.7 6.4 58 163-220 1-84 (324)
445 cd01483 E1_enzyme_family Super 92.4 0.21 4.5E-06 41.6 4.6 31 163-193 1-32 (143)
446 PRK04523 N-acetylornithine car 92.4 1.7 3.7E-05 41.9 11.4 61 159-219 166-252 (335)
447 cd08281 liver_ADH_like1 Zinc-d 92.4 0.29 6.2E-06 47.3 6.2 84 160-248 191-291 (371)
448 TIGR03451 mycoS_dep_FDH mycoth 92.4 0.33 7.1E-06 46.6 6.6 36 160-195 176-212 (358)
449 PRK13529 malate dehydrogenase; 92.4 2.5 5.5E-05 43.3 13.0 187 105-321 262-500 (563)
450 PRK15181 Vi polysaccharide bio 92.4 0.3 6.4E-06 46.9 6.2 36 159-194 13-49 (348)
451 PRK04308 murD UDP-N-acetylmura 92.4 0.22 4.7E-06 49.6 5.4 107 159-265 3-136 (445)
452 PRK08664 aspartate-semialdehyd 92.3 0.51 1.1E-05 45.6 7.7 81 162-248 4-108 (349)
453 cd01491 Ube1_repeat1 Ubiquitin 92.3 0.88 1.9E-05 42.9 9.1 37 157-193 15-52 (286)
454 PRK06114 short chain dehydroge 92.3 0.46 1E-05 43.1 7.1 37 158-194 5-42 (254)
455 cd08296 CAD_like Cinnamyl alco 92.3 0.37 8E-06 45.6 6.7 36 160-195 163-198 (333)
456 TIGR01142 purT phosphoribosylg 92.3 0.27 5.9E-06 47.7 5.8 56 163-218 1-69 (380)
457 PRK05884 short chain dehydroge 92.3 0.4 8.6E-06 42.9 6.5 33 163-195 2-35 (223)
458 PLN02427 UDP-apiose/xylose syn 92.2 0.34 7.5E-06 47.0 6.5 64 156-219 9-94 (386)
459 cd01337 MDH_glyoxysomal_mitoch 92.2 0.39 8.5E-06 45.8 6.7 87 162-249 1-119 (310)
460 TIGR03201 dearomat_had 6-hydro 92.2 0.33 7.2E-06 46.4 6.3 36 160-195 166-201 (349)
461 PF04321 RmlD_sub_bind: RmlD s 92.2 0.15 3.3E-06 47.7 3.8 58 162-221 1-61 (286)
462 PRK07806 short chain dehydroge 92.1 0.34 7.4E-06 43.5 6.0 37 158-194 3-40 (248)
463 PRK07825 short chain dehydroge 92.1 0.43 9.4E-06 43.7 6.7 37 158-194 2-39 (273)
464 PRK08589 short chain dehydroge 92.0 0.39 8.5E-06 44.1 6.4 36 158-193 3-39 (272)
465 COG0540 PyrB Aspartate carbamo 92.0 0.39 8.5E-06 45.4 6.3 60 159-218 156-231 (316)
466 PRK15057 UDP-glucose 6-dehydro 92.0 0.48 1E-05 46.6 7.2 61 159-219 294-367 (388)
467 PRK08594 enoyl-(acyl carrier p 92.0 0.92 2E-05 41.4 8.7 36 158-193 4-42 (257)
468 TIGR01214 rmlD dTDP-4-dehydror 92.0 0.33 7.2E-06 44.7 5.8 57 163-221 1-60 (287)
469 KOG0399 Glutamate synthase [Am 92.0 0.4 8.6E-06 52.5 6.9 64 159-222 1783-1881(2142)
470 TIGR02622 CDP_4_6_dhtase CDP-g 92.0 0.36 7.7E-06 46.2 6.2 37 159-195 2-39 (349)
471 PRK07370 enoyl-(acyl carrier p 92.0 0.49 1.1E-05 43.2 6.9 36 158-193 3-41 (258)
472 cd01485 E1-1_like Ubiquitin ac 91.9 0.2 4.4E-06 44.5 4.1 37 157-193 15-52 (198)
473 PLN02272 glyceraldehyde-3-phos 91.9 0.2 4.3E-06 49.5 4.4 30 162-191 86-116 (421)
474 cd01488 Uba3_RUB Ubiquitin act 91.9 0.7 1.5E-05 43.6 7.9 87 163-250 1-131 (291)
475 PRK12367 short chain dehydroge 91.9 0.37 8E-06 44.0 5.9 63 158-220 11-88 (245)
476 PRK08862 short chain dehydroge 91.9 0.38 8.3E-06 43.3 5.9 38 158-195 2-40 (227)
477 cd08233 butanediol_DH_like (2R 91.8 0.47 1E-05 45.2 6.8 84 160-248 172-273 (351)
478 PRK07984 enoyl-(acyl carrier p 91.7 0.55 1.2E-05 43.2 7.0 35 159-193 4-41 (262)
479 PLN03129 NADP-dependent malic 91.7 5.4 0.00012 41.2 14.4 186 105-320 288-518 (581)
480 PLN02989 cinnamyl-alcohol dehy 91.6 0.57 1.2E-05 44.1 7.1 61 160-220 4-86 (325)
481 PRK14852 hypothetical protein; 91.6 0.49 1.1E-05 51.4 7.2 157 158-322 329-544 (989)
482 PRK06171 sorbitol-6-phosphate 91.6 0.34 7.5E-06 44.1 5.4 39 158-196 6-45 (266)
483 PRK10537 voltage-gated potassi 91.6 0.47 1E-05 46.7 6.6 67 161-227 240-318 (393)
484 PRK05865 hypothetical protein; 91.6 0.84 1.8E-05 49.3 9.0 89 162-250 1-105 (854)
485 COG0057 GapA Glyceraldehyde-3- 91.6 0.35 7.6E-06 46.2 5.4 31 162-192 2-34 (335)
486 PRK05671 aspartate-semialdehyd 91.5 0.95 2.1E-05 43.6 8.5 81 162-247 5-97 (336)
487 PRK07424 bifunctional sterol d 91.5 0.34 7.4E-06 47.9 5.6 62 158-219 175-253 (406)
488 PRK06179 short chain dehydroge 91.3 0.29 6.2E-06 44.7 4.6 36 160-195 3-39 (270)
489 TIGR03325 BphB_TodD cis-2,3-di 91.3 0.62 1.3E-05 42.4 6.8 36 159-194 3-39 (262)
490 PRK07533 enoyl-(acyl carrier p 91.3 0.72 1.6E-05 42.1 7.2 37 158-194 7-46 (258)
491 KOG4169 15-hydroxyprostaglandi 91.3 0.67 1.5E-05 42.2 6.7 97 158-259 2-101 (261)
492 cd08234 threonine_DH_like L-th 91.3 0.49 1.1E-05 44.5 6.3 86 160-250 159-260 (334)
493 PRK05717 oxidoreductase; Valid 91.3 0.61 1.3E-05 42.2 6.7 37 158-194 7-44 (255)
494 PRK06598 aspartate-semialdehyd 91.2 0.54 1.2E-05 45.8 6.5 81 162-247 2-98 (369)
495 PRK08217 fabG 3-ketoacyl-(acyl 91.2 0.36 7.8E-06 43.2 5.1 37 158-194 2-39 (253)
496 TIGR01777 yfcH conserved hypot 91.2 0.48 1E-05 43.5 6.0 57 164-220 1-66 (292)
497 PF00044 Gp_dh_N: Glyceraldehy 91.2 0.25 5.4E-06 42.1 3.7 31 163-193 2-33 (151)
498 PRK09288 purT phosphoribosylgl 91.1 0.63 1.4E-05 45.3 7.0 36 161-196 12-47 (395)
499 PRK07200 aspartate/ornithine c 91.1 0.87 1.9E-05 44.9 7.9 61 158-218 184-269 (395)
500 PRK06153 hypothetical protein; 91.1 0.24 5.2E-06 48.4 3.9 35 158-192 173-208 (393)
No 1
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=7.5e-75 Score=550.91 Aligned_cols=314 Identities=28% Similarity=0.426 Sum_probs=276.8
Q ss_pred CCCeEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCC
Q 020073 14 HLPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAG 93 (331)
Q Consensus 14 ~k~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G 93 (331)
||++|+++.+. ++...+. |++.+++..+........+.+.+.+.++|++++. ..++++++++++|+||+|+++|+|
T Consensus 1 ~~~~vl~~~~~--~~~~~~~-l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~-~~~~~~~~l~~~p~Lk~I~~~g~G 76 (323)
T PRK15409 1 MKPSVILYKAL--PDDLLQR-LEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGS-GEKVDAALLEKMPKLRAASTISVG 76 (323)
T ss_pred CCceEEEeCCC--CHHHHHH-HHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEc-CCCCCHHHHhhCCCCeEEEECcee
Confidence 35889999976 5677777 8777776543221111223345566899999875 458999999999999999999999
Q ss_pred CCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCC-CCCCCccCCCceEEEEecChH
Q 020073 94 VNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIG-DYPLGSKLGGKRVGIVGLGNI 172 (331)
Q Consensus 94 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~-~~~~~~~l~g~~vgIiG~G~I 172 (331)
+|+||+++|+++||.|+|+||+++++||||++++||+++|++..+++.+++|.|.... ....|.+|+|||+||||+|+|
T Consensus 77 ~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~I 156 (323)
T PRK15409 77 YDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRI 156 (323)
T ss_pred cccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHH
Confidence 9999999999999999999999999999999999999999999999999999996431 112478999999999999999
Q ss_pred HHHHHHHHh-hCCCEEEEECCCCCC-C---CccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcC
Q 020073 173 GLQVAKRLQ-AFGCNVLYNSRSKKP-V---PYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVG 247 (331)
Q Consensus 173 G~~~A~~l~-~~G~~V~~~~~~~~~-~---~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~s 247 (331)
|+.+|++++ +|||+|++|+++... . ....+.++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|
T Consensus 157 G~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~a 236 (323)
T PRK15409 157 GMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAG 236 (323)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECC
Confidence 999999998 999999999987543 1 11234689999999999999999999999999999999999999999999
Q ss_pred CCCccCHHHHHHHHHhCCceEEEeecCCCCCCCC-CccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 020073 248 RGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP-KELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLS 326 (331)
Q Consensus 248 rg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~-~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~ 326 (331)
||++||++||++||++|+|+||+||||++||++. +|||++|||++|||+||.|.+++.++...+++||.+|++|+++.|
T Consensus 237 RG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~ 316 (323)
T PRK15409 237 RGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDALQGKVEKN 316 (323)
T ss_pred CccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999999999999999999864 489999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 020073 327 PVTAE 331 (331)
Q Consensus 327 ~v~~~ 331 (331)
.||++
T Consensus 317 ~vn~~ 321 (323)
T PRK15409 317 CVNPQ 321 (323)
T ss_pred ccCcc
Confidence 99975
No 2
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=2e-74 Score=546.11 Aligned_cols=313 Identities=37% Similarity=0.571 Sum_probs=280.3
Q ss_pred CCCeEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCC
Q 020073 14 HLPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAG 93 (331)
Q Consensus 14 ~k~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G 93 (331)
+|+.++...+. +++..++ +.+.|++..+.....+.. .+.+.+.++|++++....++++++++++|+||+|++.|+|
T Consensus 1 mk~~~~~~~~~--~~~~~~~-l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G 76 (324)
T COG1052 1 MKIVVLSTRKL--PPEVLER-LKEKFEVERYEDDLTPDT-ELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAG 76 (324)
T ss_pred CCcEEEecCcC--CHHHHHH-hhccEEEEEeccCCccch-HHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccc
Confidence 45777777665 5677778 888888655433212222 4556668999999987889999999999999999999999
Q ss_pred CCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCC--CCCCCccCCCceEEEEecCh
Q 020073 94 VNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIG--DYPLGSKLGGKRVGIVGLGN 171 (331)
Q Consensus 94 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~--~~~~~~~l~g~~vgIiG~G~ 171 (331)
|||||+++|+++||.|+|+|++++++||||++++||++.|++...++++|+|.|...+ ....+.+++|||+||||+|+
T Consensus 77 ~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~Gr 156 (324)
T COG1052 77 YDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGR 156 (324)
T ss_pred cCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCH
Confidence 9999999999999999999999999999999999999999999999999999998753 23468899999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEc
Q 020073 172 IGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNV 246 (331)
Q Consensus 172 IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~ 246 (331)
||+++|+++++|||+|+||+|++.+ .+..+ .+++|++++||+|++|||+|++|+||||++.|++||+|++|||+
T Consensus 157 IG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y-~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNt 235 (324)
T COG1052 157 IGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARY-VDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNT 235 (324)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCChHHHhhcCcee-ccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEEC
Confidence 9999999999999999999998743 22344 45999999999999999999999999999999999999999999
Q ss_pred CCCCccCHHHHHHHHHhCCceEEEeecCCCCCCC-CCccccCCc---eEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 020073 247 GRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYV-PKELLELDN---VVLQPHRAVFTSECFVDLCELAVGNLEALFSNQ 322 (331)
Q Consensus 247 srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~-~~~L~~~~n---vilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~ 322 (331)
|||++||++||++||++|+|+|||||||+.||.. +++|+.++| |++|||+|++|.+++.+|.+.+++|+.+|++|+
T Consensus 236 aRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~ 315 (324)
T COG1052 236 ARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGG 315 (324)
T ss_pred CCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999985 568888777 999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q 020073 323 PLLSPVTAE 331 (331)
Q Consensus 323 ~~~~~v~~~ 331 (331)
.+.++|+++
T Consensus 316 ~~~~~v~~~ 324 (324)
T COG1052 316 VPPNEVNPE 324 (324)
T ss_pred CCCCCCCCC
Confidence 999999985
No 3
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-74 Score=547.16 Aligned_cols=310 Identities=32% Similarity=0.467 Sum_probs=273.4
Q ss_pred CCCeEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCC
Q 020073 14 HLPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAG 93 (331)
Q Consensus 14 ~k~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G 93 (331)
++.+++...+. .++.++. +...... .........++.+.+.+.++|++++ +.+++++++++.+|+||+|++.|+|
T Consensus 2 ~~~~vl~~~~~--~~~~~~~-l~~~~~~-~~~~~~~~~~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~G 76 (324)
T COG0111 2 MMIKVLVTDPL--APDALEE-LLAAYDV-EVPDGPDLDEEELLEALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGAG 76 (324)
T ss_pred CcceeeccCcc--CHHHHHH-HHhcccc-ccccccccchHHHHhhcccCcEEEE-ecCCCCHHHHhhCCCceEEEEcccc
Confidence 34678888776 6777777 6554222 2222222233445566789999988 7789999999999999999999999
Q ss_pred CCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHH
Q 020073 94 VNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIG 173 (331)
Q Consensus 94 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG 173 (331)
+||||+++++++||.|+|+|+.|+.+||||+++++|+++|+++.+++.+++|.|.+. ...|.+|+|||+||||+|.||
T Consensus 77 vd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~--~~~g~el~gkTvGIiG~G~IG 154 (324)
T COG0111 77 VDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRK--AFRGTELAGKTVGIIGLGRIG 154 (324)
T ss_pred ccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCcccc--ccccccccCCEEEEECCCHHH
Confidence 999999999999999999999999999999999999999999999999999999863 224679999999999999999
Q ss_pred HHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 020073 174 LQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGR 248 (331)
Q Consensus 174 ~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~sr 248 (331)
+.+|+++++|||+|++||+.... .+.....+|++++++||||++|+|+|++|+||||++.|++||+|++|||+||
T Consensus 155 ~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aR 234 (324)
T COG0111 155 RAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAAR 234 (324)
T ss_pred HHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCC
Confidence 99999999999999999995433 2344567899999999999999999999999999999999999999999999
Q ss_pred CCccCHHHHHHHHHhCCceEEEeecCCCCCCCCC-ccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC---C
Q 020073 249 GAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPK-ELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQP---L 324 (331)
Q Consensus 249 g~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~-~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~---~ 324 (331)
|++||++||++||++|+|+||+||||++||++++ |||++|||++|||+||+|.|+..++...+++|+.+|++|++ .
T Consensus 235 G~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~ 314 (324)
T COG0111 235 GGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPVVNN 314 (324)
T ss_pred cceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 9999999999999999999999999999998875 99999999999999999999999999999999999999999 4
Q ss_pred CCCCCC
Q 020073 325 LSPVTA 330 (331)
Q Consensus 325 ~~~v~~ 330 (331)
.+.|+.
T Consensus 315 ~~~v~~ 320 (324)
T COG0111 315 APEVDL 320 (324)
T ss_pred cccccc
Confidence 555543
No 4
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=2.4e-72 Score=536.52 Aligned_cols=315 Identities=34% Similarity=0.514 Sum_probs=277.9
Q ss_pred CCCeEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCC
Q 020073 14 HLPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAG 93 (331)
Q Consensus 14 ~k~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G 93 (331)
||+||+++.+. .+...+. |++.+++..+........+.+.+.++++|+++++...++++++++++|+||||+++|+|
T Consensus 1 ~~~kil~~~~~--~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G 77 (333)
T PRK13243 1 MKPKVFITREI--PENGIEM-LEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVG 77 (333)
T ss_pred CCceEEEECCC--CHHHHHH-HhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCcc
Confidence 46889998865 5666667 87777654332211112334456678999998876668999999999999999999999
Q ss_pred CCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCC-----CCCCCccCCCceEEEEe
Q 020073 94 VNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIG-----DYPLGSKLGGKRVGIVG 168 (331)
Q Consensus 94 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~-----~~~~~~~l~g~~vgIiG 168 (331)
+|+||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|.|.... ....|.+|+|+||||||
T Consensus 78 ~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG 157 (333)
T PRK13243 78 YDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIG 157 (333)
T ss_pred ccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999997421 11246799999999999
Q ss_pred cChHHHHHHHHHhhCCCEEEEECCCCCCC----CccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEE
Q 020073 169 LGNIGLQVAKRLQAFGCNVLYNSRSKKPV----PYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIV 244 (331)
Q Consensus 169 ~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lI 244 (331)
+|.||+.+|+++++|||+|++|+++.... ......++++++++||+|++|+|++++|+++|+++.|++||+|++||
T Consensus 158 ~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lI 237 (333)
T PRK13243 158 FGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILV 237 (333)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE
Confidence 99999999999999999999999976541 11124589999999999999999999999999999999999999999
Q ss_pred EcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 020073 245 NVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPL 324 (331)
Q Consensus 245 n~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~ 324 (331)
|+|||++||++||+++|++|+|+||+||||++||++++|||++|||++|||+||+|.++..++.+.+++||.+|++|+++
T Consensus 238 N~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~ 317 (333)
T PRK13243 238 NTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGEVP 317 (333)
T ss_pred ECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999998867999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 020073 325 LSPVTAE 331 (331)
Q Consensus 325 ~~~v~~~ 331 (331)
.|.||++
T Consensus 318 ~~~v~~~ 324 (333)
T PRK13243 318 PTLVNRE 324 (333)
T ss_pred CcccCHH
Confidence 9999863
No 5
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=3.1e-71 Score=524.30 Aligned_cols=301 Identities=26% Similarity=0.421 Sum_probs=262.6
Q ss_pred eEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCCC
Q 020073 17 RVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNH 96 (331)
Q Consensus 17 ~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~ 96 (331)
||+++.+..+.+...+. |++.+++..+ ... +. +.+.+.+.++|+++++ ..++++++++++|+||||+++|+|+|+
T Consensus 2 ki~~~~~~~~~~~~~~~-l~~~~~~~~~-~~~-~~-~~~~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~ 76 (311)
T PRK08410 2 KIVILDAKTLGDKDLSV-FEEFGDFQIY-PTT-SP-EEVIERIKDANIIITN-KVVIDKEVLSQLPNLKLICITATGTNN 76 (311)
T ss_pred eEEEEecCCCChhhHHH-HhhCceEEEe-CCC-CH-HHHHHHhCCCCEEEEC-CCCCCHHHHhhCCCCeEEEEccccccc
Confidence 37777764345555666 7776665443 221 22 3345566899998874 568999999999999999999999999
Q ss_pred CChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCC----CCccCCCceEEEEecChH
Q 020073 97 IHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYP----LGSKLGGKRVGIVGLGNI 172 (331)
Q Consensus 97 id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~----~~~~l~g~~vgIiG~G~I 172 (331)
||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+|+|.|.....+. .+++|+|||+||||+|+|
T Consensus 77 id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~I 156 (311)
T PRK08410 77 VDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTI 156 (311)
T ss_pred ccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHH
Confidence 9999999999999999999999999999999999999999999999999997532111 246899999999999999
Q ss_pred HHHHHHHHhhCCCEEEEECCCCCC-CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCc
Q 020073 173 GLQVAKRLQAFGCNVLYNSRSKKP-VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAV 251 (331)
Q Consensus 173 G~~~A~~l~~~G~~V~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~ 251 (331)
|+++|+++++|||+|++|+++... .......++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++
T Consensus 157 G~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~v 236 (311)
T PRK08410 157 GKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGI 236 (311)
T ss_pred HHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccc
Confidence 999999999999999999997543 1222356899999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHhCCceEEEeecCCCCCCCCC-ccccC---CceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 020073 252 IDENEMVRCLVRGEIAGAGLDVFENEPYVPK-ELLEL---DNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQP 323 (331)
Q Consensus 252 vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~-~L~~~---~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~ 323 (331)
||++||++||++|+|+ |+||||++||++++ |||++ |||++|||+||+|.++..++...+++|+.+|++|++
T Consensus 237 VDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~~ 311 (311)
T PRK08410 237 VNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGGK 311 (311)
T ss_pred cCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999 99999999998754 89987 899999999999999999999999999999999863
No 6
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=2e-70 Score=520.05 Aligned_cols=306 Identities=24% Similarity=0.417 Sum_probs=262.6
Q ss_pred EEEECCCCC--CchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCC
Q 020073 18 VLVIKPPPP--LTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVN 95 (331)
Q Consensus 18 vl~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d 95 (331)
|++++...+ .+...+. |++.+..+...... . ++.+.+.+.++|+++++ ..++++++++++|+||||+++|+|+|
T Consensus 3 i~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~-~-~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d 78 (317)
T PRK06487 3 AVFLDHDSLDLGDLDLSP-LEQAFDELQLHDAT-T-PEQVAERLRGAQVAISN-KVALDAAALAAAPQLKLILVAATGTN 78 (317)
T ss_pred EEEEccccCCccccchhH-HHhhCCeEEEecCC-C-HHHHHHHhCCCeEEEEe-CCCCCHHHHhhCCCCeEEEEcCcccc
Confidence 777765322 2334455 66555333322222 1 23345566899988864 56899999999999999999999999
Q ss_pred CCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCC----CCCccCCCceEEEEecCh
Q 020073 96 HIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDY----PLGSKLGGKRVGIVGLGN 171 (331)
Q Consensus 96 ~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~----~~~~~l~g~~vgIiG~G~ 171 (331)
+||+++++++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|.....+ ..+.+|+|||+||||+|+
T Consensus 79 ~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~ 158 (317)
T PRK06487 79 NVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGE 158 (317)
T ss_pred ccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCH
Confidence 9999999999999999999999999999999999999999999999999999753211 124689999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCc
Q 020073 172 IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAV 251 (331)
Q Consensus 172 IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~ 251 (331)
||+++|+++++|||+|++|+++..... ....+|++++++||+|++|+|+|++|+|+||++.|++||+|++|||+|||++
T Consensus 159 IG~~vA~~l~~fgm~V~~~~~~~~~~~-~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~v 237 (317)
T PRK06487 159 LGGAVARLAEAFGMRVLIGQLPGRPAR-PDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGL 237 (317)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCCccc-ccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccc
Confidence 999999999999999999998644322 2245899999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHhCCceEEEeecCCCCCCCC-Ccccc--CCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 020073 252 IDENEMVRCLVRGEIAGAGLDVFENEPYVP-KELLE--LDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPV 328 (331)
Q Consensus 252 vd~~al~~aL~~~~i~ga~lDV~~~EP~~~-~~L~~--~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v 328 (331)
||++||++||++|+|+||+||||++||++. +|||. +|||++|||+||+|.++..++...+++||.+|++|+++ |.|
T Consensus 238 Vde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~-~~v 316 (317)
T PRK06487 238 VDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPL-RVV 316 (317)
T ss_pred cCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCCC-cCC
Confidence 999999999999999999999999999876 48995 89999999999999999999999999999999999854 555
Q ss_pred C
Q 020073 329 T 329 (331)
Q Consensus 329 ~ 329 (331)
|
T Consensus 317 ~ 317 (317)
T PRK06487 317 S 317 (317)
T ss_pred C
Confidence 4
No 7
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=9.4e-70 Score=531.03 Aligned_cols=308 Identities=26% Similarity=0.343 Sum_probs=273.3
Q ss_pred CCeEEEECCCCCCchHHHHHHhcc-C-cEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccC
Q 020073 15 LPRVLVIKPPPPLTLFGDKFISRS-F-QLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASA 92 (331)
Q Consensus 15 k~~vl~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~ 92 (331)
|++|+++++. .+...+. |++. + ++.. .....+ ++.+.+.+.++|++++++..++++++++++|+||||+++|+
T Consensus 10 ~~~ili~~~~--~~~~~~~-l~~~~~~~v~~-~~~~~~-~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~ 84 (409)
T PRK11790 10 KIKFLLLEGV--HQSAVEV-LRAAGYTNIEY-HKGALD-EEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVAIGCFCI 84 (409)
T ss_pred CeEEEEECCC--CHHHHHH-HHhcCCceEEE-CCCCCC-HHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeEEEECce
Confidence 4578888765 5666666 7654 5 4433 222222 23345566899998877667899999999999999999999
Q ss_pred CCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChH
Q 020073 93 GVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNI 172 (331)
Q Consensus 93 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~I 172 (331)
|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|.+. ...+.+|+|||+||||+|+|
T Consensus 85 G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~--~~~~~~L~gktvGIiG~G~I 162 (409)
T PRK11790 85 GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKS--AAGSFEVRGKTLGIVGYGHI 162 (409)
T ss_pred ecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCccccc--ccCcccCCCCEEEEECCCHH
Confidence 9999999999999999999999999999999999999999999999999999999753 12467999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEECCCCCC--CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCC
Q 020073 173 GLQVAKRLQAFGCNVLYNSRSKKP--VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGA 250 (331)
Q Consensus 173 G~~~A~~l~~~G~~V~~~~~~~~~--~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~ 250 (331)
|+.+|+++++|||+|++||++... .+.....++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||+
T Consensus 163 G~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 242 (409)
T PRK11790 163 GTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGT 242 (409)
T ss_pred HHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCc
Confidence 999999999999999999987543 223344689999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHhCCceEEEeecCCCCCCCC-----CccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 020073 251 VIDENEMVRCLVRGEIAGAGLDVFENEPYVP-----KELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLL 325 (331)
Q Consensus 251 ~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~-----~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~ 325 (331)
+||++||++||++|+|+||+||||++||++. +|||++|||++|||+||+|.++..++.+.+++|+.+|++|+++.
T Consensus 243 ~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~~~~~~ 322 (409)
T PRK11790 243 VVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYSDNGSTL 322 (409)
T ss_pred ccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 9999999999999999999999999999764 48999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 020073 326 SPVT 329 (331)
Q Consensus 326 ~~v~ 329 (331)
+.||
T Consensus 323 ~~vn 326 (409)
T PRK11790 323 SAVN 326 (409)
T ss_pred ccee
Confidence 9998
No 8
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=1.4e-69 Score=524.43 Aligned_cols=316 Identities=25% Similarity=0.363 Sum_probs=273.8
Q ss_pred ccCCCCeEEEECCCCCCch-HHHHHHhcc-CcEEEeccCC-ccHHHHHHhhc-CCeeEEEEeCCCCCCHHHHhcCCC--c
Q 020073 11 QSQHLPRVLVIKPPPPLTL-FGDKFISRS-FQLLKAYESS-LSLEQFLISHA-HSIEAILCSGDSPVTLDILRLLPK--L 84 (331)
Q Consensus 11 ~~~~k~~vl~~~~~~~~~~-~~~~~l~~~-~~~~~~~~~~-~~~~~~l~~~~-~~~d~ii~~~~~~i~~~~l~~~p~--L 84 (331)
.-+.|++|+++.+. +++ ..+. |.+. +++....... ...++.+.+.+ .++|++++....++++++++++|+ |
T Consensus 11 ~~~~~~~v~~~~~~--~~~~~~~~-L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~l 87 (386)
T PLN02306 11 NPNGKYRVVSTKPM--PGTRWINL-LVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGG 87 (386)
T ss_pred CCCCCceEEEeCCC--CcHHHHHH-HHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCc
Confidence 34678999999876 443 5666 7654 6654322111 11233444554 569999887667899999999996 6
Q ss_pred eEEEEccCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCC-CCCCCccCCCce
Q 020073 85 RLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIG-DYPLGSKLGGKR 163 (331)
Q Consensus 85 k~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~-~~~~~~~l~g~~ 163 (331)
|+|+++|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|.... ....|.+|+|+|
T Consensus 88 k~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gkt 167 (386)
T PLN02306 88 KAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQT 167 (386)
T ss_pred eEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCE
Confidence 9999999999999999999999999999999999999999999999999999999999999985321 112477899999
Q ss_pred EEEEecChHHHHHHHHHh-hCCCEEEEECCCCCC--C------C------------ccccCCHHhhhcCCCEEEEeccCC
Q 020073 164 VGIVGLGNIGLQVAKRLQ-AFGCNVLYNSRSKKP--V------P------------YAFYSNVCELAANSDALIICCALT 222 (331)
Q Consensus 164 vgIiG~G~IG~~~A~~l~-~~G~~V~~~~~~~~~--~------~------------~~~~~~l~ell~~aDiV~l~~P~t 222 (331)
+||||+|.||+.+|++++ +|||+|++||++... . + .....+|++++++||+|++|+|+|
T Consensus 168 vGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt 247 (386)
T PLN02306 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLD 247 (386)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCC
Confidence 999999999999999985 999999999987642 0 0 012358999999999999999999
Q ss_pred hhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHH
Q 020073 223 DQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSE 302 (331)
Q Consensus 223 ~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~ 302 (331)
++|+||||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++++||++|||++|||+||+|.+
T Consensus 248 ~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPHiag~T~e 327 (386)
T PLN02306 248 KTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIASASKW 327 (386)
T ss_pred hhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCccccCcHH
Confidence 99999999999999999999999999999999999999999999999999999999876789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 020073 303 CFVDLCELAVGNLEALFSNQPLLSPVT 329 (331)
Q Consensus 303 ~~~~~~~~~~~nl~~~~~g~~~~~~v~ 329 (331)
+++++.+.+++|+.+|++|+++.|.||
T Consensus 328 ~~~~~~~~~~~ni~~~~~g~~~~~~~~ 354 (386)
T PLN02306 328 TREGMATLAALNVLGKLKGYPVWGDPN 354 (386)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCccccc
Confidence 999999999999999999999999998
No 9
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=4.5e-69 Score=510.02 Aligned_cols=268 Identities=26% Similarity=0.447 Sum_probs=243.8
Q ss_pred HHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhc
Q 020073 55 LISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRK 134 (331)
Q Consensus 55 l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~ 134 (331)
+.+.+.++|++++ +..++++++++++|+||||+++|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|+
T Consensus 38 ~~~~~~~~d~ii~-~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~R~ 116 (314)
T PRK06932 38 TIERAKDADIVIT-SKVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHS 116 (314)
T ss_pred HHHHhCCCcEEEE-eCCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHHHhC
Confidence 3455679998876 456799999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHcCCcccCCCC----CCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhc
Q 020073 135 ISSADRFLRQGLWSKIGDY----PLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAA 210 (331)
Q Consensus 135 ~~~~~~~~~~g~w~~~~~~----~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~ 210 (331)
+..+++.+++|.|.....+ ..+.+|+|||+||||+|.||+++|+++++|||+|++|+++........+.+|+++++
T Consensus 117 ~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~ 196 (314)
T PRK06932 117 LMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLK 196 (314)
T ss_pred hHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHH
Confidence 9999999999999753211 124689999999999999999999999999999999998643211112468999999
Q ss_pred CCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCC-Cccc----
Q 020073 211 NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP-KELL---- 285 (331)
Q Consensus 211 ~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~-~~L~---- 285 (331)
+||+|++|||+|++|+|+||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++. +|||
T Consensus 197 ~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~~~ 276 (314)
T PRK06932 197 QADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAK 276 (314)
T ss_pred hCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhhHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999865 4898
Q ss_pred cCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 020073 286 ELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQP 323 (331)
Q Consensus 286 ~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~ 323 (331)
++|||++|||+||+|.++..++.+.+++||.+|++|++
T Consensus 277 ~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~ 314 (314)
T PRK06932 277 RLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK 314 (314)
T ss_pred CCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 59999999999999999999999999999999999864
No 10
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=5.9e-69 Score=515.42 Aligned_cols=306 Identities=24% Similarity=0.438 Sum_probs=265.0
Q ss_pred ccCCCCeEEEECCCCCCch---HHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEE
Q 020073 11 QSQHLPRVLVIKPPPPLTL---FGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLV 87 (331)
Q Consensus 11 ~~~~k~~vl~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I 87 (331)
-+++||+||++.+. .+. +..+++ +.+++..+... +.++ +.+.+.++|+++++ ..++++++++.+|+||||
T Consensus 14 ~~~~~~~vl~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~--~~~e-~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I 86 (347)
T PLN02928 14 SDMRPTRVLFCGPE--FPASYSYTREYL-QKYPFIQVDAV--ARED-VPDVIANYDICVPK-MMRLDADIIARASQMKLI 86 (347)
T ss_pred CCCCCCEEEEECCC--chhHHHHHHHHh-hcCCeeEecCC--CHHH-HHHHhcCCcEEEEC-CCCCCHHHHhcCCCceEE
Confidence 45678899999866 333 222313 34444332221 2223 45556799988774 558999999999999999
Q ss_pred EEccCCCCCCChhHHhhCCcEEEeCCCC---ChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceE
Q 020073 88 VTASAGVNHIHMPECRRRGIAVANAGSI---FSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRV 164 (331)
Q Consensus 88 ~~~~~G~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~v 164 (331)
++.|+|+|++|++++.++||.|+|+|++ ++.+||||+++++|+++|++..+++.+++|.|.. +.+.+|+|+|+
T Consensus 87 ~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~----~~~~~l~gktv 162 (347)
T PLN02928 87 MQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE----PIGDTLFGKTV 162 (347)
T ss_pred EECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc----ccccCCCCCEE
Confidence 9999999999999999999999999985 7899999999999999999999999999999964 24678999999
Q ss_pred EEEecChHHHHHHHHHhhCCCEEEEECCCCCC--CC---------------ccccCCHHhhhcCCCEEEEeccCChhhhh
Q 020073 165 GIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--VP---------------YAFYSNVCELAANSDALIICCALTDQTRR 227 (331)
Q Consensus 165 gIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--~~---------------~~~~~~l~ell~~aDiV~l~~P~t~~t~~ 227 (331)
||||+|.||+.+|+++++|||+|++|+|+..+ .. .....+|++++++||+|++|+|+|++|++
T Consensus 163 GIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~ 242 (347)
T PLN02928 163 FILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAG 242 (347)
T ss_pred EEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhc
Confidence 99999999999999999999999999987432 10 11346899999999999999999999999
Q ss_pred hccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCC-CccccCCceEEcCCCCCCcHHHHHH
Q 020073 228 MINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP-KELLELDNVVLQPHRAVFTSECFVD 306 (331)
Q Consensus 228 li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~-~~L~~~~nvilTPH~a~~t~~~~~~ 306 (331)
+|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++ +|||++|||++|||+||+|.+++.+
T Consensus 243 li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~ 322 (347)
T PLN02928 243 IVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRS 322 (347)
T ss_pred ccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999865 4999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCC
Q 020073 307 LCELAVGNLEALFSNQPLLSP 327 (331)
Q Consensus 307 ~~~~~~~nl~~~~~g~~~~~~ 327 (331)
+.+.+++|+.+|++|+++.|.
T Consensus 323 ~~~~~~~nl~~~~~g~~~~~~ 343 (347)
T PLN02928 323 MGKIVGDAALQLHAGRPLTGI 343 (347)
T ss_pred HHHHHHHHHHHHHCCCCCCce
Confidence 999999999999999988764
No 11
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=2.4e-68 Score=514.52 Aligned_cols=289 Identities=25% Similarity=0.369 Sum_probs=256.9
Q ss_pred Hhcc-CcEEEeccCCccHHHHHHhhcCCeeEEEEeC--CCCCCHHHHhcCCCceEEEEccCCCCCCChhHHhhCCcEEEe
Q 020073 35 ISRS-FQLLKAYESSLSLEQFLISHAHSIEAILCSG--DSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVAN 111 (331)
Q Consensus 35 l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~--~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n 111 (331)
|++. ++++...+.+.+ ++.+.+.+.++|++++.. ..+++++.++++|+||||+++|+|+|+||+++|+++||.|+|
T Consensus 71 l~~~g~~~v~~~~~~~~-~~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n 149 (386)
T PLN03139 71 LESQGHQYIVTDDKEGP-DCELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAE 149 (386)
T ss_pred HHhcCCeEEEeCCCCCC-HHHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEE
Confidence 5555 455443332222 334456678999998753 357999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEEC
Q 020073 112 AGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNS 191 (331)
Q Consensus 112 ~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~ 191 (331)
++|+++.+||||++++||++.|++..+++.+++|.|........+.+|.|++|||||+|+||+.+|++|++|||+|++||
T Consensus 150 ~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d 229 (386)
T PLN03139 150 VTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHD 229 (386)
T ss_pred CCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEEC
Confidence 99999999999999999999999999999999999975322234678999999999999999999999999999999999
Q ss_pred CCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 020073 192 RSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGE 265 (331)
Q Consensus 192 ~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~ 265 (331)
++..+ .+.....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++||++||++|+
T Consensus 230 ~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~ 309 (386)
T PLN03139 230 RLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGH 309 (386)
T ss_pred CCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCC
Confidence 87533 223344689999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeecCCCCCCCC-CccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 020073 266 IAGAGLDVFENEPYVP-KELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPL 324 (331)
Q Consensus 266 i~ga~lDV~~~EP~~~-~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~ 324 (331)
|+||+||||++||++. +|||.+|||++|||+||.|.+++.++.+.+++||.+|++|+++
T Consensus 310 l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~ 369 (386)
T PLN03139 310 IGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDF 369 (386)
T ss_pred ceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999875 4999999999999999999999999999999999999999864
No 12
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=2.3e-68 Score=514.94 Aligned_cols=293 Identities=23% Similarity=0.378 Sum_probs=261.0
Q ss_pred Hhcc-CcEEEeccCCccHHHHHHhhcCCeeEEEEeC--CCCCCHHHHhcCCCceEEEEccCCCCCCChhHHhhCCcEEEe
Q 020073 35 ISRS-FQLLKAYESSLSLEQFLISHAHSIEAILCSG--DSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVAN 111 (331)
Q Consensus 35 l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~--~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n 111 (331)
|++. ++++...+.+.+ ++.+.+.+.++|++++.. ..++++++++++|+||||+++|+|+|+||+++|+++||.|+|
T Consensus 64 l~~~g~e~~~~~~~~~~-~~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~n 142 (385)
T PRK07574 64 LEERGHELVVTSDKDGP-DSDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAE 142 (385)
T ss_pred HHhcCcEEEEeCCCCCC-HHHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEEEc
Confidence 6555 555443222222 334456678999998753 467999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEEC
Q 020073 112 AGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNS 191 (331)
Q Consensus 112 ~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~ 191 (331)
++++++.+||||++++||+++|++..+++.+++|.|........+.+|+|++|||||+|+||+.+|++|++|||+|++||
T Consensus 143 ~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~d 222 (385)
T PRK07574 143 VTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTD 222 (385)
T ss_pred CCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEC
Confidence 99999999999999999999999999999999999975422224678999999999999999999999999999999999
Q ss_pred CCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 020073 192 RSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGE 265 (331)
Q Consensus 192 ~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~ 265 (331)
|+..+ .+.....++++++++||+|++|||+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+
T Consensus 223 r~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~ 302 (385)
T PRK07574 223 RHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGH 302 (385)
T ss_pred CCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCC
Confidence 98632 233345789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeecCCCCCCCCC-ccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 020073 266 IAGAGLDVFENEPYVPK-ELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPV 328 (331)
Q Consensus 266 i~ga~lDV~~~EP~~~~-~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v 328 (331)
|+||+||||++||++.+ |||++|||++|||+||+|.+++.++.+.+++||++|++|+++.|+.
T Consensus 303 i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~~ 366 (385)
T PRK07574 303 LAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDEY 366 (385)
T ss_pred ccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCCc
Confidence 99999999999998754 9999999999999999999999999999999999999999998864
No 13
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=1.4e-67 Score=530.87 Aligned_cols=306 Identities=31% Similarity=0.460 Sum_probs=272.7
Q ss_pred eEEEECCCCCCchHHHHHHhcc-CcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCC
Q 020073 17 RVLVIKPPPPLTLFGDKFISRS-FQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVN 95 (331)
Q Consensus 17 ~vl~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d 95 (331)
||+++.+. .+...+. |++. +++.. . ...+. +.+.+.++++|++++++.+++++++++++|+||||+++|+|+|
T Consensus 1 ~vli~~~~--~~~~~~~-l~~~~~~~~~-~-~~~~~-~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d 74 (525)
T TIGR01327 1 KVLIADPI--SPDGIDI-LEDVGVEVDV-Q-TGLSR-EELLEIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVD 74 (525)
T ss_pred CEEEeCCC--CHHHHHH-HHhcCcEEEe-C-CCCCH-HHHHHHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccc
Confidence 47777765 5666666 7654 45442 2 12222 3345566899999987777899999999999999999999999
Q ss_pred CCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHH
Q 020073 96 HIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQ 175 (331)
Q Consensus 96 ~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~ 175 (331)
+||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|+|.+. ...|.+|+|||+||||+|+||+.
T Consensus 75 ~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~--~~~g~~l~gktvgIiG~G~IG~~ 152 (525)
T TIGR01327 75 NIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRK--AFMGTELYGKTLGVIGLGRIGSI 152 (525)
T ss_pred hhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCcccc--ccCccccCCCEEEEECCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999753 22578999999999999999999
Q ss_pred HHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCC
Q 020073 176 VAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGA 250 (331)
Q Consensus 176 ~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~ 250 (331)
+|++|++|||+|++||++... .+.....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||+
T Consensus 153 vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 232 (525)
T TIGR01327 153 VAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGG 232 (525)
T ss_pred HHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCc
Confidence 999999999999999986432 233334589999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 020073 251 VIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPVTA 330 (331)
Q Consensus 251 ~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~~ 330 (331)
+||++||++||++|+|+||+||||++||++++|||++|||++|||+||+|.+++.++...+++|+.+|++|+++.|.||.
T Consensus 233 ~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~ 312 (525)
T TIGR01327 233 IIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVNA 312 (525)
T ss_pred eeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCceeeC
Confidence 99999999999999999999999999997767999999999999999999999999999999999999999999999985
No 14
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=9.2e-67 Score=525.12 Aligned_cols=305 Identities=30% Similarity=0.457 Sum_probs=272.3
Q ss_pred eEEEECCCCCCchHHHHHHhcc--CcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCC
Q 020073 17 RVLVIKPPPPLTLFGDKFISRS--FQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGV 94 (331)
Q Consensus 17 ~vl~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~ 94 (331)
+|+++.+. .+...+. |++. +++.. . ...+.+ .+.+.+.++|++++++.+++++++++++|+||||+++|+|+
T Consensus 2 ~ili~~~~--~~~~~~~-l~~~~~~~v~~-~-~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~ 75 (526)
T PRK13581 2 KVLVSDPI--SPAGLEI-LKDAPGVEVDV-K-TGLDKE-ELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGV 75 (526)
T ss_pred eEEEeCCC--CHHHHHH-HhccCCeEEEe-C-CCCCHH-HHHHHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCccc
Confidence 58888765 5666666 7765 34332 2 122223 34556689999998777789999999999999999999999
Q ss_pred CCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHH
Q 020073 95 NHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGL 174 (331)
Q Consensus 95 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~ 174 (331)
|+||+++|+++||.|+|+|++++.+||||++++||+++|+++.+++.+++|.|.+. ...+.+|.|||+||||+|+||+
T Consensus 76 d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~--~~~g~~l~gktvgIiG~G~IG~ 153 (526)
T PRK13581 76 DNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERK--KFMGVELYGKTLGIIGLGRIGS 153 (526)
T ss_pred ccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCcc--CccccccCCCEEEEECCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999753 2247789999999999999999
Q ss_pred HHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 020073 175 QVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRG 249 (331)
Q Consensus 175 ~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg 249 (331)
.+|+++++|||+|++||++... .+... .++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||
T Consensus 154 ~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~-~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG 232 (526)
T PRK13581 154 EVAKRAKAFGMKVIAYDPYISPERAAQLGVEL-VSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARG 232 (526)
T ss_pred HHHHHHHhCCCEEEEECCCCChhHHHhcCCEE-EcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCC
Confidence 9999999999999999986432 23333 38999999999999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 020073 250 AVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPVT 329 (331)
Q Consensus 250 ~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~ 329 (331)
++||++||++||++|+|+||+||||++||++++|||++|||++|||+||+|.+++.++.+.+++|+.+|++|+++.|.||
T Consensus 233 ~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn 312 (526)
T PRK13581 233 GIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGPVPNAVN 312 (526)
T ss_pred ceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCCcCceee
Confidence 99999999999999999999999999999876799999999999999999999999999999999999999999999998
Q ss_pred C
Q 020073 330 A 330 (331)
Q Consensus 330 ~ 330 (331)
.
T Consensus 313 ~ 313 (526)
T PRK13581 313 L 313 (526)
T ss_pred C
Confidence 5
No 15
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-66 Score=476.01 Aligned_cols=304 Identities=28% Similarity=0.415 Sum_probs=272.7
Q ss_pred eEEEECCCCCCchHHHHHHhccC-cEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHh-cCCCceEEEEccCCC
Q 020073 17 RVLVIKPPPPLTLFGDKFISRSF-QLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILR-LLPKLRLVVTASAGV 94 (331)
Q Consensus 17 ~vl~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~-~~p~Lk~I~~~~~G~ 94 (331)
+||+.++. .+...+. |++.+ ++...... +.+ ++...++++|++++++.+++++++|+ ...+||+|.+.++|+
T Consensus 8 ~il~~e~~--~~~~~~~-l~~~g~~v~~~~~~--~~e-el~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~ 81 (406)
T KOG0068|consen 8 KILVAESL--DQACIEI-LKDNGYQVEFKKNL--SLE-ELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGV 81 (406)
T ss_pred eEEEeccc--chHHHHH-HHhcCceEEEeccC--CHH-HHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCc
Confidence 79999976 7777877 88887 44433222 234 45566789999999999999999999 556899999999999
Q ss_pred CCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHH
Q 020073 95 NHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGL 174 (331)
Q Consensus 95 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~ 174 (331)
||+|++++.++||.|.|+|.+|+.++||+++++++++.|++++....+|+|+|.+.. ..|.+|+|||+||+|+|+||+
T Consensus 82 dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~--~~G~el~GKTLgvlG~GrIGs 159 (406)
T KOG0068|consen 82 DNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVK--YLGWELRGKTLGVLGLGRIGS 159 (406)
T ss_pred cccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecc--eeeeEEeccEEEEeecccchH
Confidence 999999999999999999999999999999999999999999999999999998752 368999999999999999999
Q ss_pred HHHHHHhhCCCEEEEECCCCCC----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCC
Q 020073 175 QVAKRLQAFGCNVLYNSRSKKP----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGA 250 (331)
Q Consensus 175 ~~A~~l~~~G~~V~~~~~~~~~----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~ 250 (331)
.+|++++++||+|++||+-... .-.....+++|+++.||||++|+|++|+|++|+|++.|++||+|..+||+|||+
T Consensus 160 eVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGG 239 (406)
T KOG0068|consen 160 EVAVRAKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGG 239 (406)
T ss_pred HHHHHHHhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCc
Confidence 9999999999999999886543 112245799999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHhCCceEEEeecCCCCCCC---CCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 020073 251 VIDENEMVRCLVRGEIAGAGLDVFENEPYV---PKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSP 327 (331)
Q Consensus 251 ~vd~~al~~aL~~~~i~ga~lDV~~~EP~~---~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~ 327 (331)
+||+.||++||++|+++||++|||+.||.. +..|.++|||++|||+|++|.|++.+++..+++++..|.+| .....
T Consensus 240 vVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~-~~~g~ 318 (406)
T KOG0068|consen 240 VVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING-NSAGS 318 (406)
T ss_pred eechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhcc-Cccce
Confidence 999999999999999999999999999976 34799999999999999999999999999999999999999 45444
Q ss_pred CC
Q 020073 328 VT 329 (331)
Q Consensus 328 v~ 329 (331)
||
T Consensus 319 Vn 320 (406)
T KOG0068|consen 319 VN 320 (406)
T ss_pred ec
Confidence 54
No 16
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=2.3e-65 Score=487.50 Aligned_cols=309 Identities=17% Similarity=0.300 Sum_probs=265.5
Q ss_pred eEEEECCCCCCchHHHHHHhccCcEE-EeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCC--CceEEEEccCC
Q 020073 17 RVLVIKPPPPLTLFGDKFISRSFQLL-KAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLP--KLRLVVTASAG 93 (331)
Q Consensus 17 ~vl~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p--~Lk~I~~~~~G 93 (331)
||++.+.-++...+..+.+++. ++. .....+.+ ++ +.+.+.++|++++....++++++++++| +||+|++.|+|
T Consensus 3 ~i~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G 79 (330)
T PRK12480 3 KIMFFGTRDYEKEMALNWGKKN-NVEVTTSKELLS-SA-TVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAG 79 (330)
T ss_pred EEEEEeCcHHHHHHHHHHHHhc-CeEEEEcCCCCC-HH-HHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEecccc
Confidence 6888875432333444414433 432 21222222 23 3556689999998766789999999998 89999999999
Q ss_pred CCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHH
Q 020073 94 VNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIG 173 (331)
Q Consensus 94 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG 173 (331)
+|+||+++|+++||.|+|+|++++++||||+++++|+++|++..+++.+++|.|.... ...+++|+|++|||||+|.||
T Consensus 80 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~-~~~~~~l~g~~VgIIG~G~IG 158 (330)
T PRK12480 80 FDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQA-EIMSKPVKNMTVAIIGTGRIG 158 (330)
T ss_pred cchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCccccc-ccCccccCCCEEEEECCCHHH
Confidence 9999999999999999999999999999999999999999999999999999764221 124678999999999999999
Q ss_pred HHHHHHHhhCCCEEEEECCCCCC-CC-ccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCc
Q 020073 174 LQVAKRLQAFGCNVLYNSRSKKP-VP-YAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAV 251 (331)
Q Consensus 174 ~~~A~~l~~~G~~V~~~~~~~~~-~~-~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~ 251 (331)
+.+|++|++|||+|++|+++... .. .....++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||.+
T Consensus 159 ~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~ 238 (330)
T PRK12480 159 AATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAV 238 (330)
T ss_pred HHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccc
Confidence 99999999999999999988654 22 22345899999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHhCCceEEEeecCCCCCCC----------C----CccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHH
Q 020073 252 IDENEMVRCLVRGEIAGAGLDVFENEPYV----------P----KELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEA 317 (331)
Q Consensus 252 vd~~al~~aL~~~~i~ga~lDV~~~EP~~----------~----~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~ 317 (331)
||++||++||++|+|+||+||||++||+. + +|||++|||++|||+|++|.+++.++.+.+++|+.+
T Consensus 239 vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~~ 318 (330)
T PRK12480 239 INTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALS 318 (330)
T ss_pred cCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999952 1 269999999999999999999999999999999999
Q ss_pred HHcCCCCCCCCC
Q 020073 318 LFSNQPLLSPVT 329 (331)
Q Consensus 318 ~~~g~~~~~~v~ 329 (331)
|++|+.+.++||
T Consensus 319 ~~~~~~~~~~~~ 330 (330)
T PRK12480 319 VINTGTCETRLN 330 (330)
T ss_pred HHhCCCCcccCC
Confidence 999999999987
No 17
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=8.2e-65 Score=484.68 Aligned_cols=310 Identities=18% Similarity=0.297 Sum_probs=269.6
Q ss_pred CCCeEEEECCCCCCchHHHHHHhccCcEEE-eccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCC--ceEEEEc
Q 020073 14 HLPRVLVIKPPPPLTLFGDKFISRSFQLLK-AYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPK--LRLVVTA 90 (331)
Q Consensus 14 ~k~~vl~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~--Lk~I~~~ 90 (331)
+|++++++.+. ...+.+. +.+.+++.. .+....+ ++. .+.+.++|+++++..+++++++++++|+ ||+|+++
T Consensus 2 ~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~-~e~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~ 76 (332)
T PRK08605 2 TKIKIMSVRDE--DAPYIKA-WAEKHHVEVDLTKEALT-DDN-VEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQR 76 (332)
T ss_pred cEEEEEecCHH--HHHHHHH-HHHhcCeEEEEecCCCC-HHH-HHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEc
Confidence 56778888865 5567777 655565432 2222222 233 3556799999887778999999999997 9999999
Q ss_pred cCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecC
Q 020073 91 SAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLG 170 (331)
Q Consensus 91 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G 170 (331)
|+|+|+||+++|+++||.|+|+|++++.+||||+++++|+++|++...++.+++|.|.... ...+++|+|++|||||+|
T Consensus 77 ~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~-~~~~~~l~g~~VgIIG~G 155 (332)
T PRK08605 77 SAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEP-PILSRSIKDLKVAVIGTG 155 (332)
T ss_pred ccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCccccc-ccccceeCCCEEEEECCC
Confidence 9999999999999999999999999999999999999999999999999999999874221 124789999999999999
Q ss_pred hHHHHHHHHH-hhCCCEEEEECCCCCC---CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEc
Q 020073 171 NIGLQVAKRL-QAFGCNVLYNSRSKKP---VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNV 246 (331)
Q Consensus 171 ~IG~~~A~~l-~~~G~~V~~~~~~~~~---~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~ 246 (331)
.||+++|++| ++||++|+++|++... .......++++++++||+|++|+|++++|+++++++.+++||+|++|||+
T Consensus 156 ~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~ 235 (332)
T PRK08605 156 RIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNC 235 (332)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEEC
Confidence 9999999999 7899999999987654 12223458999999999999999999999999999999999999999999
Q ss_pred CCCCccCHHHHHHHHHhCCceEEEeecCCCCCC--CCC------------ccccCCceEEcCCCCCCcHHHHHHHHHHHH
Q 020073 247 GRGAVIDENEMVRCLVRGEIAGAGLDVFENEPY--VPK------------ELLELDNVVLQPHRAVFTSECFVDLCELAV 312 (331)
Q Consensus 247 srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~--~~~------------~L~~~~nvilTPH~a~~t~~~~~~~~~~~~ 312 (331)
|||.++|+++|+++|++|+|+||+||||+.||. +.+ +||++|||++|||+||+|.++..++...++
T Consensus 236 sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~ 315 (332)
T PRK08605 236 ARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDAL 315 (332)
T ss_pred CCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999983 221 499999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCC
Q 020073 313 GNLEALFSNQPLLSPVT 329 (331)
Q Consensus 313 ~nl~~~~~g~~~~~~v~ 329 (331)
+|+.+|++|++..|.||
T Consensus 316 ~n~~~~~~g~~~~~~~~ 332 (332)
T PRK08605 316 DATLEVLQTGTTRLRVN 332 (332)
T ss_pred HHHHHHHcCCCCCCCcC
Confidence 99999999999999986
No 18
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=1.2e-63 Score=468.29 Aligned_cols=267 Identities=45% Similarity=0.764 Sum_probs=246.3
Q ss_pred eEEEEeCCCCCCHHHHhcC-CCceEEEEccCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHH
Q 020073 63 EAILCSGDSPVTLDILRLL-PKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRF 141 (331)
Q Consensus 63 d~ii~~~~~~i~~~~l~~~-p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~ 141 (331)
.++.+......+.+.+.+. |+||+|+++|+|+||||+++|++|||+|+|+|+.+.++|||++++++|.++|++...+++
T Consensus 63 ~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~ 142 (336)
T KOG0069|consen 63 IAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEM 142 (336)
T ss_pred eeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 3444444456777777765 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--CCc---cccCCHHhhhcCCCEEE
Q 020073 142 LRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--VPY---AFYSNVCELAANSDALI 216 (331)
Q Consensus 142 ~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--~~~---~~~~~l~ell~~aDiV~ 216 (331)
+++|+|.....++.|.++.||||||+|+|+||+.+|++|++||+.+.|++|++.+ ... ....++++++++||+|+
T Consensus 143 ~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~iv 222 (336)
T KOG0069|consen 143 VRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIV 222 (336)
T ss_pred hhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEE
Confidence 9999995555567889999999999999999999999999999999999998765 111 22459999999999999
Q ss_pred EeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCC
Q 020073 217 ICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHR 296 (331)
Q Consensus 217 l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~ 296 (331)
+|||+|++|+|+||++.|++||+|+++||++||+++|++++++||++|+|+||+||||++||.++++|++++||++|||+
T Consensus 223 v~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHi 302 (336)
T KOG0069|consen 223 VNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHI 302 (336)
T ss_pred EecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccceeEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999666799999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 020073 297 AVFTSECFVDLCELAVGNLEALFSNQPLLSPVT 329 (331)
Q Consensus 297 a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~ 329 (331)
|++|.+++.+|+..++.|+.+++.|+++.++++
T Consensus 303 gs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~~ 335 (336)
T KOG0069|consen 303 GSATLETREKMAEIVLNNLLAFFSGKPLLTPVL 335 (336)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHccCCCCCcCC
Confidence 999999999999999999999999999988876
No 19
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=4.8e-62 Score=461.17 Aligned_cols=262 Identities=22% Similarity=0.332 Sum_probs=234.1
Q ss_pred CCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCCCCChhH-----HhhCCcEEEeCCC-CChHHHHHHHHHHHHHHHh
Q 020073 60 HSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPE-----CRRRGIAVANAGS-IFSDDAADAAVGLLIDVWR 133 (331)
Q Consensus 60 ~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~-----~~~~gI~v~n~~~-~~~~~vAE~al~l~L~~~r 133 (331)
.++|+++++. .+.+.++ .|+||||++.|+|+|++|.+. +..+||.|+|+++ .++.+||||+++++|++.|
T Consensus 37 ~~a~~~~~~~---~~~~~l~-~~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r 112 (312)
T PRK15469 37 DPADYALVWH---PPVEMLA-GRDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFR 112 (312)
T ss_pred ccCeEEEEeC---CChHHhc-cCCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHc
Confidence 5789888864 2567776 589999999999999998322 3458999999864 6899999999999999999
Q ss_pred chHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-CC---ccccCCHHhhh
Q 020073 134 KISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-VP---YAFYSNVCELA 209 (331)
Q Consensus 134 ~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-~~---~~~~~~l~ell 209 (331)
++..+.+.+++|.|... .+.+++|+||||||+|.||+.+|++|++|||+|++|+++.+. .+ .....++++++
T Consensus 113 ~~~~~~~~~~~~~w~~~----~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l 188 (312)
T PRK15469 113 RFDDYQALQNSSHWQPL----PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFL 188 (312)
T ss_pred ChHHHHHHHHhCCcCCC----CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHH
Confidence 99999999999999643 245799999999999999999999999999999999987654 12 12245899999
Q ss_pred cCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCC-ccccCC
Q 020073 210 ANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPK-ELLELD 288 (331)
Q Consensus 210 ~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~-~L~~~~ 288 (331)
++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++.+ |||++|
T Consensus 189 ~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~ 268 (312)
T PRK15469 189 SQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHP 268 (312)
T ss_pred hcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998764 899999
Q ss_pred ceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 020073 289 NVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPVTAE 331 (331)
Q Consensus 289 nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~~~ 331 (331)
||++|||+||+|.+. ++.+.+++|+++|++|+++.|.||++
T Consensus 269 nvi~TPHiag~t~~~--~~~~~~~~n~~~~~~g~~~~~~V~~~ 309 (312)
T PRK15469 269 RVAITPHVAAVTRPA--EAVEYISRTIAQLEKGERVCGQVDRA 309 (312)
T ss_pred CeEECCcCCCCcCHH--HHHHHHHHHHHHHHcCCCCcccCCcc
Confidence 999999999999874 68899999999999999999999974
No 20
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=3.8e-61 Score=452.81 Aligned_cols=257 Identities=31% Similarity=0.407 Sum_probs=230.4
Q ss_pred CCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHH
Q 020073 60 HSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSAD 139 (331)
Q Consensus 60 ~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~ 139 (331)
.++|++++... +..+|+||||++.|+|+|+||+++|+++||.++|. |.++.+||||+++++|+++|++..++
T Consensus 33 ~~a~~~~~~~~-------~~~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~ 104 (303)
T PRK06436 33 YDAEAILIKGR-------YVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENN 104 (303)
T ss_pred CCCCEEEecCC-------cCCCCCeEEEEECCcccCcccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHH
Confidence 46787765432 23468999999999999999999999988888775 78999999999999999999999999
Q ss_pred HHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCCCcc-ccCCHHhhhcCCCEEEEe
Q 020073 140 RFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYA-FYSNVCELAANSDALIIC 218 (331)
Q Consensus 140 ~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~ 218 (331)
+.+++|.|... .+++|+|+|+||||+|+||+++|+++++|||+|++|+|+..+.+.. .+.++++++++||+|++|
T Consensus 105 ~~~~~g~w~~~----~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~l~ell~~aDiv~~~ 180 (303)
T PRK06436 105 YNMKNGNFKQS----PTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLIS 180 (303)
T ss_pred HHHHcCCCCCC----CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcccCcccccCCHHHHHhhCCEEEEC
Confidence 99999999753 3568999999999999999999999999999999999976543322 256899999999999999
Q ss_pred ccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCC-
Q 020073 219 CALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRA- 297 (331)
Q Consensus 219 ~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a- 297 (331)
+|+|++|+++|+++.|++||+|++|||+|||+++|++||+++|++|++.||+||||++||++++. .+|||++|||++
T Consensus 181 lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~--~~~nviiTPHi~g 258 (303)
T PRK06436 181 LPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET--NPDNVILSPHVAG 258 (303)
T ss_pred CCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC--CCCCEEECCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999975543 789999999986
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 020073 298 VFTSECFVDLCELAVGNLEALFSNQPLLSPVTAE 331 (331)
Q Consensus 298 ~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~~~ 331 (331)
++|.++..++.+.+++|+.+|++|++ .|.||++
T Consensus 259 ~~t~e~~~~~~~~~~~ni~~~~~g~~-~~~V~~~ 291 (303)
T PRK06436 259 GMSGEIMQPAVALAFENIKNFFEGKP-KNIVRKE 291 (303)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHcCCC-CceEchH
Confidence 58899999999999999999999986 6888864
No 21
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=1.5e-60 Score=458.75 Aligned_cols=275 Identities=23% Similarity=0.323 Sum_probs=238.5
Q ss_pred eEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCCC
Q 020073 17 RVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNH 96 (331)
Q Consensus 17 ~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~ 96 (331)
||++.... +...+. +.+.+++......+.+.+ .+.++|++++++.+++++++++ .|+||+|+++++|+||
T Consensus 2 kIl~d~~~---~~~~~~-~~~~~ev~~~~~~~~~~~-----~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~ 71 (378)
T PRK15438 2 KILVDENM---PYAREL-FSRLGEVKAVPGRPIPVA-----QLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDH 71 (378)
T ss_pred EEEEeCCc---chHHHH-HhhcCcEEEeCCCCCCHH-----HhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccc
Confidence 57777755 333444 665667654332222222 2478999999887899999986 6999999999999999
Q ss_pred CChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHH
Q 020073 97 IHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQV 176 (331)
Q Consensus 97 id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~ 176 (331)
||+++++++||.|+|+||+++.+||||+++++|++.|+ .+.+|+|+||||||+|+||+.+
T Consensus 72 iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~--------------------~g~~L~gktvGIIG~G~IG~~v 131 (378)
T PRK15438 72 VDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAER--------------------DGFSLHDRTVGIVGVGNVGRRL 131 (378)
T ss_pred cCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhcc--------------------CCCCcCCCEEEEECcCHHHHHH
Confidence 99999999999999999999999999999999999885 1346899999999999999999
Q ss_pred HHHHhhCCCEEEEECCCCCCCC-ccccCCHHhhhcCCCEEEEeccCChh----hhhhccHHHHhcCCCCcEEEEcCCCCc
Q 020073 177 AKRLQAFGCNVLYNSRSKKPVP-YAFYSNVCELAANSDALIICCALTDQ----TRRMINREVMLALGKEGIIVNVGRGAV 251 (331)
Q Consensus 177 A~~l~~~G~~V~~~~~~~~~~~-~~~~~~l~ell~~aDiV~l~~P~t~~----t~~li~~~~l~~mk~ga~lIn~srg~~ 251 (331)
|+++++|||+|++||+.....+ ...+.+|++++++||+|++|+|+|++ |+||+|++.|++||+|++|||+|||++
T Consensus 132 A~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~v 211 (378)
T PRK15438 132 QARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAV 211 (378)
T ss_pred HHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchh
Confidence 9999999999999997644322 12356899999999999999999996 999999999999999999999999999
Q ss_pred cCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 020073 252 IDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQP 323 (331)
Q Consensus 252 vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~ 323 (331)
||++||+++|++|++.||+||||++||.++++||..++ ++|||+||+|.+...++...+++|+.+|+ |.+
T Consensus 212 VDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~-~~~ 281 (378)
T PRK15438 212 VDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFI-GHE 281 (378)
T ss_pred cCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHH-cCc
Confidence 99999999999999999999999999976678988776 99999999999999999999999999999 443
No 22
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=6.1e-60 Score=455.82 Aligned_cols=277 Identities=21% Similarity=0.325 Sum_probs=240.0
Q ss_pred eEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCCC
Q 020073 17 RVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNH 96 (331)
Q Consensus 17 ~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~ 96 (331)
||++-+.++ ...+. +++..++......... .+.+.++|++++++.+++++++++. |+||||+++++|+||
T Consensus 2 kI~~d~~~p---~~~~~-~~~~~~v~~~~~~~~~-----~~~l~daD~liv~~~t~v~~~ll~~-~~Lk~I~~~~~G~D~ 71 (381)
T PRK00257 2 KIVADENIP---LLDAF-FAGFGEIRRLPGRAFD-----RAAVRDADVLLVRSVTRVDRALLEG-SRVRFVGTCTIGTDH 71 (381)
T ss_pred EEEEecCch---hHHHH-HhhCCcEEEcCCcccC-----HHHhCCceEEEEeCCCCCCHHHhcC-CCCeEEEECCccccc
Confidence 577777763 22223 5544555432211111 2234789999988888999999984 899999999999999
Q ss_pred CChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHH
Q 020073 97 IHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQV 176 (331)
Q Consensus 97 id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~ 176 (331)
||+++++++||.|+|+||+|+.+||||+++++|++.|+ .+.+++|+||||||+|+||+.+
T Consensus 72 iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~--------------------~g~~l~gktvGIIG~G~IG~~v 131 (381)
T PRK00257 72 LDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER--------------------EGVDLAERTYGVVGAGHVGGRL 131 (381)
T ss_pred cCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc--------------------cCCCcCcCEEEEECCCHHHHHH
Confidence 99999999999999999999999999999999998875 1346899999999999999999
Q ss_pred HHHHhhCCCEEEEECCCCCC-CCccccCCHHhhhcCCCEEEEeccCCh----hhhhhccHHHHhcCCCCcEEEEcCCCCc
Q 020073 177 AKRLQAFGCNVLYNSRSKKP-VPYAFYSNVCELAANSDALIICCALTD----QTRRMINREVMLALGKEGIIVNVGRGAV 251 (331)
Q Consensus 177 A~~l~~~G~~V~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~~P~t~----~t~~li~~~~l~~mk~ga~lIn~srg~~ 251 (331)
|+++++|||+|++||+.... .+...+.++++++++||+|++|+|+|+ +|+||||++.|++||+|++|||+|||++
T Consensus 132 a~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~v 211 (381)
T PRK00257 132 VRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAV 211 (381)
T ss_pred HHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcc
Confidence 99999999999999986543 222345689999999999999999999 5999999999999999999999999999
Q ss_pred cCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 020073 252 IDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPL 324 (331)
Q Consensus 252 vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~ 324 (331)
||++||+++|++|++.||+||||++||.++++||.. ||++|||+||+|.++..++...+++|+.+|+.+.+.
T Consensus 212 Vde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~~ 283 (381)
T PRK00257 212 VDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFFGIPAR 283 (381)
T ss_pred cCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 999999999999999999999999999766689986 999999999999999999999999999999998753
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=6.5e-49 Score=344.02 Aligned_cols=172 Identities=40% Similarity=0.636 Sum_probs=151.3
Q ss_pred HHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-C----Cc
Q 020073 125 VGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-V----PY 199 (331)
Q Consensus 125 l~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-~----~~ 199 (331)
++++|++.|++..+++.+++|.|... ....+++++|+||||||+|+||+++|+++++|||+|++|+|+... . ..
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~~-~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~ 79 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWASR-ERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFG 79 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHHH-TTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTT
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCCC-cCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccccc
Confidence 58999999999999999999999211 123578999999999999999999999999999999999998865 1 12
Q ss_pred cccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCC
Q 020073 200 AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPY 279 (331)
Q Consensus 200 ~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~ 279 (331)
....++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||+
T Consensus 80 ~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~ 159 (178)
T PF02826_consen 80 VEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPL 159 (178)
T ss_dssp EEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSS
T ss_pred ceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCC
Confidence 24579999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC-ccccCCceEEcCCCC
Q 020073 280 VPK-ELLELDNVVLQPHRA 297 (331)
Q Consensus 280 ~~~-~L~~~~nvilTPH~a 297 (331)
+.+ |||++|||++|||+|
T Consensus 160 ~~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 160 PADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp STTHHHHTSTTEEEESS-T
T ss_pred CCCChHHcCCCEEEeCccC
Confidence 865 999999999999997
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.97 E-value=2.1e-31 Score=248.33 Aligned_cols=253 Identities=23% Similarity=0.381 Sum_probs=225.2
Q ss_pred EEEEeCCCCCCHHHHhcCCCceEEEEccCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHH
Q 020073 64 AILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLR 143 (331)
Q Consensus 64 ~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~ 143 (331)
.-+...+..++++-+++++.||++...+.|+|++|+.++.+.||.|||.|+..-+.+|+-++..+|.++|+-.-..+.++
T Consensus 76 gam~yh~i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~cq~l~ 155 (435)
T KOG0067|consen 76 GAMMYHTITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLCQALR 155 (435)
T ss_pred hcceeeecccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchhhhhhc
Confidence 33444556799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCC----CCC-CccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCC
Q 020073 144 QGLWSKIGD----YPL-GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSD 213 (331)
Q Consensus 144 ~g~w~~~~~----~~~-~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aD 213 (331)
+|.|...-. ... ....+|.+.|++|+|+.|++++.++++||+.|+.||+.... .+.....++.+++.++|
T Consensus 156 eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd~~~~sd 235 (435)
T KOG0067|consen 156 EGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQDLLYQSD 235 (435)
T ss_pred ccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhcccceecccchhhhhcc
Confidence 999864311 111 34689999999999999999999999999999999987654 34444457999999999
Q ss_pred EEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCC--CCccccCCceE
Q 020073 214 ALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYV--PKELLELDNVV 291 (331)
Q Consensus 214 iV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~--~~~L~~~~nvi 291 (331)
.+++||-+++.+.++|+.-.+.+|+.|++++|++||.++|+.+|.++|+.|++.|++ |.. -.||-+-||.+
T Consensus 236 ~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-------~~~~~~~~l~d~pn~i 308 (435)
T KOG0067|consen 236 CVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-------PRSFKQGPLKDAPNLI 308 (435)
T ss_pred ceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-------CcccccccccCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999988 221 23788999999
Q ss_pred EcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 020073 292 LQPHRAVFTSECFVDLCELAVGNLEALFSNQP 323 (331)
Q Consensus 292 lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~ 323 (331)
+|||.++++..+..++.+.++..+++-..|.-
T Consensus 309 c~~~ta~~~e~~~~e~re~aa~eiR~ai~g~i 340 (435)
T KOG0067|consen 309 CTPHTAWYSEAASVELREVAALEIRRAITGRI 340 (435)
T ss_pred CCcccchhhHHHHHHHHHHHhhhhhhccCCCC
Confidence 99999999999999999999999998887753
No 25
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.89 E-value=1.8e-22 Score=168.32 Aligned_cols=101 Identities=28% Similarity=0.458 Sum_probs=82.1
Q ss_pred EEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCCCC
Q 020073 18 VLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHI 97 (331)
Q Consensus 18 vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~i 97 (331)
||++++. +++..+. |++.+++.. .. ..+ .+.+.+.+.++|+++++..+++++++++++|+||||++.|+|+|+|
T Consensus 1 ili~~~~--~~~~~~~-l~~~~~v~~-~~-~~~-~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i 74 (133)
T PF00389_consen 1 ILITDPL--PDEEIER-LEEGFEVEF-CD-SPS-EEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNI 74 (133)
T ss_dssp EEESSS---SHHHHHH-HHHTSEEEE-ES-SSS-HHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB
T ss_pred eEEeccC--CHHHHHH-HHCCceEEE-eC-CCC-HHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCcc
Confidence 6788876 6788888 888666544 33 222 3445666789999999776679999999999999999999999999
Q ss_pred ChhHHhhCCcEEEeCCCCChHHHHHHH
Q 020073 98 HMPECRRRGIAVANAGSIFSDDAADAA 124 (331)
Q Consensus 98 d~~~~~~~gI~v~n~~~~~~~~vAE~a 124 (331)
|+++|+++||.|+|+||+++.+||||+
T Consensus 75 d~~~a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 75 DLEAAKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp -HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred cHHHHhhCeEEEEEeCCcCCcchhccc
Confidence 999999999999999999999999999
No 26
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.87 E-value=2.6e-21 Score=190.08 Aligned_cols=166 Identities=20% Similarity=0.294 Sum_probs=135.6
Q ss_pred EEccCCCCCCC-hhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEE
Q 020073 88 VTASAGVNHIH-MPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGI 166 (331)
Q Consensus 88 ~~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgI 166 (331)
=-+++|+..+- ++.....+|+|+|+|+++..+++|+++++++++. +..+|.+ +..+.|++++|
T Consensus 196 EeTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~------d~~~R~~----------~~~LaGKtVgV 259 (476)
T PTZ00075 196 EETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLI------DGIFRAT----------DVMIAGKTVVV 259 (476)
T ss_pred ecchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHH------HHHHHhc----------CCCcCCCEEEE
Confidence 34577776652 2222336899999999999999999999999988 3344443 23689999999
Q ss_pred EecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCC
Q 020073 167 VGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKE 240 (331)
Q Consensus 167 iG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~g 240 (331)
+|+|.||+.+|+++++||++|+++++.+.. .++ ...++++++++||+|++|+ .+.++|+++.|++||+|
T Consensus 260 IG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~-~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpG 334 (476)
T PTZ00075 260 CGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGY-QVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNN 334 (476)
T ss_pred ECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCc-eeccHHHHHhcCCEEEECC----CcccccCHHHHhccCCC
Confidence 999999999999999999999999776543 122 2457999999999999984 37889999999999999
Q ss_pred cEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCC
Q 020073 241 GIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP 281 (331)
Q Consensus 241 a~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~ 281 (331)
++|||+||+ |++.++++|+++. ++||++.||...
T Consensus 335 AiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~ 368 (476)
T PTZ00075 335 AIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD 368 (476)
T ss_pred cEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence 999999999 7888889998754 799999999654
No 27
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.83 E-value=1.7e-20 Score=175.95 Aligned_cols=148 Identities=19% Similarity=0.291 Sum_probs=126.0
Q ss_pred CCCHHHHhcCCCceEEEEccCCCCCCChh-HHhhCCcEEE------eCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHc
Q 020073 72 PVTLDILRLLPKLRLVVTASAGVNHIHMP-ECRRRGIAVA------NAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQ 144 (331)
Q Consensus 72 ~i~~~~l~~~p~Lk~I~~~~~G~d~id~~-~~~~~gI~v~------n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~ 144 (331)
++++++++++|. ++...+|+++.|++ +|+++||.|+ |++.+|+.++||.++.+++..
T Consensus 81 ~l~~~~l~~~~~---~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~------------- 144 (287)
T TIGR02853 81 VLTPELLESTKG---HCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH------------- 144 (287)
T ss_pred cccHHHHHhcCC---CCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh-------------
Confidence 467899999983 77788899999988 8999999999 899999999999999987742
Q ss_pred CCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc--ccCCHHhhhcCCCEEE
Q 020073 145 GLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA--FYSNVCELAANSDALI 216 (331)
Q Consensus 145 g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~--~~~~l~ell~~aDiV~ 216 (331)
.+.+++|++++|+|+|.||+.+|+.|+++|++|++++|+... .+.. ...++.++++++|+|+
T Consensus 145 ----------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVi 214 (287)
T TIGR02853 145 ----------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVI 214 (287)
T ss_pred ----------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEE
Confidence 123688999999999999999999999999999999998653 1221 2346788999999999
Q ss_pred EeccCChhhhhhccHHHHhcCCCCcEEEEcCCCC
Q 020073 217 ICCALTDQTRRMINREVMLALGKEGIIVNVGRGA 250 (331)
Q Consensus 217 l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~ 250 (331)
+|+|.+ +++++.++.||+++++||++...
T Consensus 215 nt~P~~-----ii~~~~l~~~k~~aliIDlas~P 243 (287)
T TIGR02853 215 NTIPAL-----VLTADVLSKLPKHAVIIDLASKP 243 (287)
T ss_pred ECCChH-----HhCHHHHhcCCCCeEEEEeCcCC
Confidence 999864 77889999999999999999844
No 28
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.67 E-value=9.2e-16 Score=144.62 Aligned_cols=162 Identities=17% Similarity=0.271 Sum_probs=128.4
Q ss_pred hcCCeeEEEEeCC----------------CCCCHHHHhcCCCceEEEEccCCCCCCChhHHhhCCcEEEeCCCC------
Q 020073 58 HAHSIEAILCSGD----------------SPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSI------ 115 (331)
Q Consensus 58 ~~~~~d~ii~~~~----------------~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~------ 115 (331)
.+.++|+|+..-+ ..++++.++.+|++..+. .|.+.++++ +.+.++||.+.+....
T Consensus 52 ~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ 129 (296)
T PRK08306 52 ALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAIL 129 (296)
T ss_pred HhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhhh
Confidence 3468898886411 124788999999997544 588889988 8889999999987764
Q ss_pred ChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073 116 FSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK 195 (331)
Q Consensus 116 ~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~ 195 (331)
++.++||.++.+.+. + .+.++.|++++|||+|.+|+.+++.|+.+|++|.+++|+..
T Consensus 130 ns~~~aegav~~a~~---~--------------------~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~ 186 (296)
T PRK08306 130 NSIPTAEGAIMMAIE---H--------------------TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA 186 (296)
T ss_pred ccHhHHHHHHHHHHH---h--------------------CCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 888999997775442 0 12357899999999999999999999999999999999864
Q ss_pred C------CCcc--ccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 020073 196 P------VPYA--FYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRG 249 (331)
Q Consensus 196 ~------~~~~--~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg 249 (331)
. .+.. .+.++.+.++++|+|+.++|. .+++++.++.|++++++||++..
T Consensus 187 ~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 187 HLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred HHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEccC
Confidence 3 2222 234678889999999999874 46889999999999999999863
No 29
>PLN02494 adenosylhomocysteinase
Probab=99.64 E-value=5e-16 Score=152.65 Aligned_cols=115 Identities=19% Similarity=0.275 Sum_probs=100.8
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINR 231 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~ 231 (331)
.+.|++++|+|+|.||+.+|+++++||++|+++++++.. .++. ..+++++++.+|+|+.+ ..+++++++
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~-vv~leEal~~ADVVI~t----TGt~~vI~~ 325 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQ-VLTLEDVVSEADIFVTT----TGNKDIIMV 325 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe-eccHHHHHhhCCEEEEC----CCCccchHH
Confidence 479999999999999999999999999999999887643 2232 34789999999999973 457889999
Q ss_pred HHHhcCCCCcEEEEcCC-CCccCHHHHHHH--HHhCCceEEEeecCCCCC
Q 020073 232 EVMLALGKEGIIVNVGR-GAVIDENEMVRC--LVRGEIAGAGLDVFENEP 278 (331)
Q Consensus 232 ~~l~~mk~ga~lIn~sr-g~~vd~~al~~a--L~~~~i~ga~lDV~~~EP 278 (331)
+.|+.||+|++++|+|| +..||+++|.++ ++.+.++ +.+|+|+.|-
T Consensus 326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d 374 (477)
T PLN02494 326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD 374 (477)
T ss_pred HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence 99999999999999999 689999999998 9999998 9999999753
No 30
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.54 E-value=2.7e-14 Score=139.25 Aligned_cols=114 Identities=21% Similarity=0.262 Sum_probs=99.3
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINR 231 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~ 231 (331)
.+.|++++|+|+|.||+.+|++++++|++|+++++.+.+ .++ ...+++++++.+|+|+.+.. +.++|+.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~-~v~~leeal~~aDVVItaTG----~~~vI~~ 266 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGF-RVMTMEEAAKIGDIFITATG----NKDVIRG 266 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCC-EeCCHHHHHhcCCEEEECCC----CHHHHHH
Confidence 478999999999999999999999999999999876643 222 23467889999999987643 6788999
Q ss_pred HHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHhCCceEEEeecCCC
Q 020073 232 EVMLALGKEGIIVNVGRGAV-IDENEMVRCLVRGEIAGAGLDVFEN 276 (331)
Q Consensus 232 ~~l~~mk~ga~lIn~srg~~-vd~~al~~aL~~~~i~ga~lDV~~~ 276 (331)
+.|..||+|++++|+||+.+ ||.++|.+++.+.+..+..+|+|.-
T Consensus 267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 99999999999999999998 9999999999888877899999884
No 31
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.52 E-value=3.5e-14 Score=133.50 Aligned_cols=91 Identities=22% Similarity=0.309 Sum_probs=77.1
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN 230 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~ 230 (331)
..|+|+||||||+|+||+++|++|+++|++|+++++.... .+.. ..++++++++||+|++|+|+ ++++++++
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~-v~sl~Eaak~ADVV~llLPd-~~t~~V~~ 89 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFE-VMSVSEAVRTAQVVQMLLPD-EQQAHVYK 89 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCE-ECCHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence 3699999999999999999999999999999998765332 1332 35899999999999999997 67899999
Q ss_pred HHHHhcCCCCcEEEEcCCCC
Q 020073 231 REVMLALGKEGIIVNVGRGA 250 (331)
Q Consensus 231 ~~~l~~mk~ga~lIn~srg~ 250 (331)
++.++.||+|++|+- |.|=
T Consensus 90 ~eil~~MK~GaiL~f-~hgf 108 (335)
T PRK13403 90 AEVEENLREGQMLLF-SHGF 108 (335)
T ss_pred HHHHhcCCCCCEEEE-CCCc
Confidence 999999999998764 3444
No 32
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.41 E-value=4.8e-13 Score=115.38 Aligned_cols=110 Identities=22% Similarity=0.372 Sum_probs=89.2
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhc-cHHHH
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMI-NREVM 234 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li-~~~~l 234 (331)
++|||||+|.||+.+|++|...|++|++|||++++ .+.....++.|+++++|+|++|+|..++++.++ +.+.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 68999999999999999999999999999998654 345567899999999999999999988888876 22378
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeec
Q 020073 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDV 273 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV 273 (331)
+.+++|.++||++....-....+.+.+.+..+. .+|.
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda 118 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVDA 118 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEEE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccce--eeee
Confidence 889999999999999999999999999987765 4554
No 33
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.38 E-value=1.9e-12 Score=120.52 Aligned_cols=117 Identities=18% Similarity=0.227 Sum_probs=101.9
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc--HH
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN--RE 232 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~--~~ 232 (331)
.+||+||+|.||..+|++|...|+.|++|||++.+ .+.....+..|+.+++|+|++|+|.+++.+..+- ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 37999999999999999999999999999999765 2555667889999999999999999999999884 67
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCC
Q 020073 233 VMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEP 278 (331)
Q Consensus 233 ~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP 278 (331)
.++.+|+|+++||+|.-+......+.++++++.+...--=|....+
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~ 126 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVP 126 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCch
Confidence 8999999999999999999999999999999998633333555555
No 34
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.35 E-value=6.6e-12 Score=123.24 Aligned_cols=151 Identities=21% Similarity=0.265 Sum_probs=110.6
Q ss_pred EEccCCCCCC-ChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEE
Q 020073 88 VTASAGVNHI-HMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGI 166 (331)
Q Consensus 88 ~~~~~G~d~i-d~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgI 166 (331)
=-+++|+..+ ......+.+++|.|++..+..+.-|...+.-- +.|.... ...+..+.|++++|
T Consensus 154 EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~---------------s~~~ai~-rat~~~l~Gk~VlV 217 (425)
T PRK05476 154 EETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGE---------------SLLDGIK-RATNVLIAGKVVVV 217 (425)
T ss_pred ecchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHh---------------hhHHHHH-HhccCCCCCCEEEE
Confidence 4567787765 22333457899999999887775553332222 2221100 00123478999999
Q ss_pred EecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCC
Q 020073 167 VGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKE 240 (331)
Q Consensus 167 iG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~g 240 (331)
+|+|.||+.+|++++++|++|+++++.+.+ .++. ..+++++++.+|+|+.++ .+.++|+.+.|..||+|
T Consensus 218 iG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~-v~~l~eal~~aDVVI~aT----G~~~vI~~~~~~~mK~G 292 (425)
T PRK05476 218 AGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFR-VMTMEEAAELGDIFVTAT----GNKDVITAEHMEAMKDG 292 (425)
T ss_pred ECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCE-ecCHHHHHhCCCEEEECC----CCHHHHHHHHHhcCCCC
Confidence 999999999999999999999999987654 2222 357899999999998875 35678999999999999
Q ss_pred cEEEEcCCCCc-cCHHHHHH
Q 020073 241 GIIVNVGRGAV-IDENEMVR 259 (331)
Q Consensus 241 a~lIn~srg~~-vd~~al~~ 259 (331)
++++|+|+... +|.++|.+
T Consensus 293 ailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 293 AILANIGHFDNEIDVAALEE 312 (425)
T ss_pred CEEEEcCCCCCccChHHHhh
Confidence 99999999886 77777654
No 35
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.32 E-value=7.9e-12 Score=117.46 Aligned_cols=105 Identities=12% Similarity=0.216 Sum_probs=89.5
Q ss_pred eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhc-c-HHHH
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMI-N-REVM 234 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li-~-~~~l 234 (331)
+|||||+|.||+.+|+.+...|++|++|+|++.. .+.....+..+++++||+|++|+|.++.++.++ + ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 4899999999999999999999999999998754 233335678899999999999999888887765 3 3467
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA 267 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ 267 (331)
..+++|.++||++++...+.+++.+.++++.+.
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~ 113 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID 113 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 788999999999999998889999999987654
No 36
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.30 E-value=1.3e-11 Score=116.15 Aligned_cols=117 Identities=18% Similarity=0.254 Sum_probs=95.6
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc--HHH
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN--REV 233 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~--~~~ 233 (331)
++|||||+|.||+.+|+.+...|++|.+||+++.. .+.....++++++++||+|++|+|.+..++.++. ...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 47999999999999999999999999999998654 2233456789999999999999999888887763 346
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCC
Q 020073 234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEP 278 (331)
Q Consensus 234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP 278 (331)
++.+++|.++||+++......+++.+.+.+..+...---|+..+|
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~ 127 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP 127 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence 778899999999999998888899999988766533334555444
No 37
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.26 E-value=1.4e-11 Score=105.31 Aligned_cols=97 Identities=23% Similarity=0.379 Sum_probs=70.5
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINR 231 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~ 231 (331)
.+.||++.|+|||.+|+.+|+.|+++|++|.+++..|-. .++. ..+++++++++|+++.++- ..+++..
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~-v~~~~~a~~~adi~vtaTG----~~~vi~~ 94 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFE-VMTLEEALRDADIFVTATG----NKDVITG 94 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-E-EE-HHHHTTT-SEEEE-SS----SSSSB-H
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcE-ecCHHHHHhhCCEEEECCC----CccccCH
Confidence 589999999999999999999999999999999987644 3343 4589999999999988753 3567899
Q ss_pred HHHhcCCCCcEEEEcCCCCc-cCHHHHHH
Q 020073 232 EVMLALGKEGIIVNVGRGAV-IDENEMVR 259 (331)
Q Consensus 232 ~~l~~mk~ga~lIn~srg~~-vd~~al~~ 259 (331)
+.|.+||+|+++.|++.-.. +|-+.|.+
T Consensus 95 e~~~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 95 EHFRQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp HHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred HHHHHhcCCeEEeccCcCceeEeeccccc
Confidence 99999999999999987554 56555443
No 38
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.24 E-value=4.3e-11 Score=112.96 Aligned_cols=110 Identities=15% Similarity=0.232 Sum_probs=93.6
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc--HHH
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN--REV 233 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~--~~~ 233 (331)
++|||||+|.||..+|+.|...|++|++||+++.. .+.....+..+++++||+|++|+|....++..+. ...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 47999999999999999999999999999998764 2333456888999999999999998877777763 346
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeec
Q 020073 234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDV 273 (331)
Q Consensus 234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV 273 (331)
+..+++|.++||+|++.....+.+.+.+.+..+. .+|.
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~lda 119 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDV 119 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence 7778999999999999999999999999998876 3553
No 39
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.22 E-value=6.9e-11 Score=111.69 Aligned_cols=107 Identities=21% Similarity=0.328 Sum_probs=91.9
Q ss_pred eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcC---CCEEEEeccCChhhhhhccHHH
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAAN---SDALIICCALTDQTRRMINREV 233 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~---aDiV~l~~P~t~~t~~li~~~~ 233 (331)
+|||||+|.||+.+|++|...|++|++|||++.. .+.....++++++++ +|+|++|+|..+.++.++ .+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~i 80 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KDL 80 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HHH
Confidence 6999999999999999999999999999998654 233445688888876 699999999888888887 457
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 020073 234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLD 272 (331)
Q Consensus 234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lD 272 (331)
+..+++|.++||+|++...+..++.+.+.+..+. .+|
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd 117 (299)
T PRK12490 81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD 117 (299)
T ss_pred hccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence 7789999999999999999999999999988765 366
No 40
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.17 E-value=4.8e-11 Score=113.58 Aligned_cols=114 Identities=26% Similarity=0.325 Sum_probs=85.5
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhc
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMI 229 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li 229 (331)
..++|++|||||+|+||+++|+.|+.+|++|+++++...+ .+.. ..+..+++++||+|++++|.+.. ..++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~-~~s~~eaa~~ADVVvLaVPd~~~-~~V~ 90 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFE-VLTVAEAAKWADVIMILLPDEVQ-AEVY 90 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCe-eCCHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence 3589999999999999999999999999999887665332 2332 34889999999999999997755 7777
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCc-eEEEeecCCCCCCCCC
Q 020073 230 NREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEI-AGAGLDVFENEPYVPK 282 (331)
Q Consensus 230 ~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i-~ga~lDV~~~EP~~~~ 282 (331)
+++.+..|++|+++ -.+.|--+.. +.+ -+...||+-..|..|.
T Consensus 91 ~~~I~~~Lk~g~iL-~~a~G~~i~~---------~~~~p~~~~~Vi~vaPn~Pg 134 (330)
T PRK05479 91 EEEIEPNLKEGAAL-AFAHGFNIHF---------GQIVPPADVDVIMVAPKGPG 134 (330)
T ss_pred HHHHHhcCCCCCEE-EECCCCChhh---------ceeccCCCCcEEEeCCCCCc
Confidence 78888899999987 5566622211 111 1345788888886543
No 41
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.16 E-value=2.1e-10 Score=108.49 Aligned_cols=108 Identities=23% Similarity=0.285 Sum_probs=91.8
Q ss_pred eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcC---CCEEEEeccCChhhhhhccHHH
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAAN---SDALIICCALTDQTRRMINREV 233 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~---aDiV~l~~P~t~~t~~li~~~~ 233 (331)
+|||||+|.||+.+|++|...|.+|.+||++++. .+.....+++++++. +|+|++++|..+.+..++ ...
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~l 80 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DEL 80 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HHH
Confidence 7999999999999999999999999999998754 233445678888775 699999999887888877 467
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeec
Q 020073 234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDV 273 (331)
Q Consensus 234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV 273 (331)
+..+++|.++||++++.......+.+.+++..+. .+|.
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da 118 (301)
T PRK09599 81 APLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV 118 (301)
T ss_pred HhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence 7889999999999999999999999999998876 3564
No 42
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.14 E-value=2e-10 Score=115.06 Aligned_cols=116 Identities=14% Similarity=0.193 Sum_probs=100.2
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----C-----Ccc---ccCCHHhhhcC---CCEEEEeccCChhh
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----V-----PYA---FYSNVCELAAN---SDALIICCALTDQT 225 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~-----~~~---~~~~l~ell~~---aDiV~l~~P~t~~t 225 (331)
.+||+||+|.||+.+|++|...|++|.+|||++.+ . +.. ...++.++.+. +|+|++|+|..+.+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV 86 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV 86 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence 36999999999999999999999999999998764 1 221 35678888875 99999999999999
Q ss_pred hhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCC
Q 020073 226 RRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEP 278 (331)
Q Consensus 226 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP 278 (331)
+.++ ...++.+++|.++||+|....-+...+.+.+++..+.....=|+..++
T Consensus 87 ~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~ 138 (493)
T PLN02350 87 DQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE 138 (493)
T ss_pred HHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence 9988 568888999999999999999999999999999999866666776665
No 43
>PLN02712 arogenate dehydrogenase
Probab=99.10 E-value=3e-10 Score=117.90 Aligned_cols=107 Identities=21% Similarity=0.347 Sum_probs=85.7
Q ss_pred CccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhc-CCCEEEEeccCChhhhhhc
Q 020073 156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAA-NSDALIICCALTDQTRRMI 229 (331)
Q Consensus 156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~-~aDiV~l~~P~t~~t~~li 229 (331)
+.++.+++|||||+|.||+.+|+.++.+|++|++++++... .+.....++++++. .+|+|++|+| ...+..++
T Consensus 364 ~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP-~~~~~~vi 442 (667)
T PLN02712 364 VNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTS-ILSTEKVL 442 (667)
T ss_pred cCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCC-hHHHHHHH
Confidence 56788999999999999999999999999999999987532 23334567888776 5999999999 46788888
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 020073 230 NREVMLALGKEGIIVNVGRGAVIDENEMVRCLVR 263 (331)
Q Consensus 230 ~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~ 263 (331)
.+-....||+|++++|++.++-...+++.+.+..
T Consensus 443 ~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~ 476 (667)
T PLN02712 443 KSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ 476 (667)
T ss_pred HHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence 7655557999999999999985555566655544
No 44
>PLN02256 arogenate dehydrogenase
Probab=99.09 E-value=1.9e-09 Score=102.07 Aligned_cols=131 Identities=22% Similarity=0.324 Sum_probs=92.4
Q ss_pred CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhh-cCCCEEEEeccCChhhhhhccHH
Q 020073 159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELA-ANSDALIICCALTDQTRRMINRE 232 (331)
Q Consensus 159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell-~~aDiV~l~~P~t~~t~~li~~~ 232 (331)
-++++|+|||+|.||+.+|+.++..|.+|++++++... .+.....++++++ .++|+|++|+|.. .+..++.+-
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl~~l 112 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVLRSL 112 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHHHhh
Confidence 35679999999999999999999999999999987532 2333346778876 4799999999954 677777543
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCC----CccccCCceEEcCCC
Q 020073 233 VMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP----KELLELDNVVLQPHR 296 (331)
Q Consensus 233 ~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~----~~L~~~~nvilTPH~ 296 (331)
....+++++++++++.++-+..+++.+.+..+. .+...-|... ...+...+++++|..
T Consensus 113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~------~~V~~HPmaG~e~~~~~~~~~~~~~~~~~ 174 (304)
T PLN02256 113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEF------DILCTHPMFGPESGKGGWAGLPFVYDKVR 174 (304)
T ss_pred hhhccCCCCEEEecCCchHHHHHHHHHhCCCCC------eEEecCCCCCCCCCccccCCCeEEEecce
Confidence 356689999999999977666666666664422 1222233211 134556667777754
No 45
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.07 E-value=7e-10 Score=108.74 Aligned_cols=98 Identities=20% Similarity=0.309 Sum_probs=81.7
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN 230 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~ 230 (331)
..+.|++|+|+|+|.||+.+|+.++++|++|+++++++.+ .+. ...+++++++.+|+|+.+.. +.+.++
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~-~~~~~~e~v~~aDVVI~atG----~~~~i~ 272 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGY-EVMTMEEAVKEGDIFVTTTG----NKDIIT 272 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCC-EEccHHHHHcCCCEEEECCC----CHHHHH
Confidence 3578999999999999999999999999999999887654 233 23357788999999998743 456788
Q ss_pred HHHHhcCCCCcEEEEcCCCCc-cCHHHHHH
Q 020073 231 REVMLALGKEGIIVNVGRGAV-IDENEMVR 259 (331)
Q Consensus 231 ~~~l~~mk~ga~lIn~srg~~-vd~~al~~ 259 (331)
.+.+..||+|++++|+|++.+ +|..+|..
T Consensus 273 ~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 273 GEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred HHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 888999999999999999876 78777664
No 46
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.04 E-value=1.3e-09 Score=102.83 Aligned_cols=109 Identities=19% Similarity=0.191 Sum_probs=90.2
Q ss_pred eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc--HHHHh
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMIN--REVML 235 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~--~~~l~ 235 (331)
+|||||+|.||+.+|+.|...|++|.+|++++.. .+.....+..++.++||+|++|+|..+.++..+. ...++
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~ 81 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTK 81 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhc
Confidence 6999999999999999999999999999987543 2333456788899999999999998888777662 23567
Q ss_pred cCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeec
Q 020073 236 ALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDV 273 (331)
Q Consensus 236 ~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV 273 (331)
.+++|.++|++|....-....+.+.+.+..+. .+|.
T Consensus 82 ~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda 117 (292)
T PRK15059 82 ASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA 117 (292)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence 78999999999999988888999999887664 4563
No 47
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.00 E-value=3.1e-09 Score=100.42 Aligned_cols=103 Identities=18% Similarity=0.283 Sum_probs=85.3
Q ss_pred eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhh---hcCCCEEEEeccCChhhhhhccHHH
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCEL---AANSDALIICCALTDQTRRMINREV 233 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~el---l~~aDiV~l~~P~t~~t~~li~~~~ 233 (331)
+|||||+|.||..+|+.|...|++|.+|||++.. .+.....+++++ +.++|+|++++|.. .++.++ .+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~l 79 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EEL 79 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HHH
Confidence 7999999999999999999999999999998754 122223455554 56789999999987 888887 466
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073 234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA 267 (331)
Q Consensus 234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ 267 (331)
...+++|.++||++.+...+...+.+.+++..+.
T Consensus 80 ~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~ 113 (298)
T TIGR00872 80 APTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH 113 (298)
T ss_pred HhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence 7788999999999999888999999999887775
No 48
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=98.98 E-value=1.9e-09 Score=107.73 Aligned_cols=116 Identities=18% Similarity=0.270 Sum_probs=98.3
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----C-----C--ccccCCHHhhhc---CCCEEEEeccCChhhh
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----V-----P--YAFYSNVCELAA---NSDALIICCALTDQTR 226 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~-----~--~~~~~~l~ell~---~aDiV~l~~P~t~~t~ 226 (331)
.+|||||+|.||+.+|++|...|++|.+|||+++. . + .....++++++. ++|+|++++|....++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 47999999999999999999999999999998764 1 2 123568888886 5899999999999999
Q ss_pred hhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCC
Q 020073 227 RMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEP 278 (331)
Q Consensus 227 ~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP 278 (331)
.++ .+.+..+++|.++||++.+.--|...+.+.+.+..+.....=|...++
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~ 132 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE 132 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence 988 567788999999999999999999999999999988755555665544
No 49
>PRK08655 prephenate dehydrogenase; Provisional
Probab=98.95 E-value=7.2e-09 Score=102.91 Aligned_cols=127 Identities=20% Similarity=0.336 Sum_probs=92.8
Q ss_pred ceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHH
Q 020073 162 KRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREV 233 (331)
Q Consensus 162 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~ 233 (331)
++|+||| +|.||+.+|+.|+..|.+|.++++++.. .+.....++.+.+.++|+|++|+|.. .+..++ ++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH-HHH
Confidence 3799998 8999999999999999999999987543 13333457888999999999999964 556666 556
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCC--CCCccccCCceEEcCCC
Q 020073 234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPY--VPKELLELDNVVLQPHR 296 (331)
Q Consensus 234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~--~~~~L~~~~nvilTPH~ 296 (331)
...+++++++++++..+....+++.+.+..+. .+...-|. +..+++....++++|+-
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~------~~V~~HPmaGp~~~~~~g~~~il~p~~ 137 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEGV------EILPTHPMFGPRTPSLKGQVVILTPTE 137 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCCCC------EEEEcCCCCCCCCcccCCCEEEEecCC
Confidence 67789999999999876555566666554321 12222332 22357778899999965
No 50
>PLN02858 fructose-bisphosphate aldolase
Probab=98.95 E-value=3.3e-09 Score=117.74 Aligned_cols=112 Identities=20% Similarity=0.203 Sum_probs=97.0
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhc--cH
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMI--NR 231 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li--~~ 231 (331)
..++||+||+|.||..||++|...|++|.+|||++.+ .+.....+..++.++||+|++|+|..+.++.++ ..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 3568999999999999999999999999999998765 344556799999999999999999999999887 35
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCC--ceEEEeec
Q 020073 232 EVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGE--IAGAGLDV 273 (331)
Q Consensus 232 ~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~--i~ga~lDV 273 (331)
..++.+++|.++|++|....-....+.+.+.+.. +. .+|.
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~--~lDa 124 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIF--LVDA 124 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceE--EEEc
Confidence 6788899999999999999999999999998876 53 4664
No 51
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=98.94 E-value=3.3e-09 Score=99.66 Aligned_cols=105 Identities=14% Similarity=0.146 Sum_probs=86.1
Q ss_pred EEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc--HHHHhcC
Q 020073 166 IVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN--REVMLAL 237 (331)
Q Consensus 166 IiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~--~~~l~~m 237 (331)
|||+|.||..+|+.|...|++|.+|||++.. .+.....++.++++++|+|++|+|....++.++. ...+..+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 6899999999999999999999999998754 2333456889999999999999998777777762 4566788
Q ss_pred CCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 020073 238 GKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLD 272 (331)
Q Consensus 238 k~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lD 272 (331)
++|.++||++....-....+.+.+.+..+. .+|
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd 113 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD 113 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence 999999999977766777888888876664 356
No 52
>PLN02858 fructose-bisphosphate aldolase
Probab=98.92 E-value=5.1e-09 Score=116.26 Aligned_cols=110 Identities=24% Similarity=0.194 Sum_probs=94.1
Q ss_pred CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhc--cHH
Q 020073 161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMI--NRE 232 (331)
Q Consensus 161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li--~~~ 232 (331)
.++|||||+|.||..+|++|...|++|.+||+++.. .+.....+..+++++||+|++|+|..++++.++ +..
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 478999999999999999999999999999998754 233345688999999999999999999998887 456
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHh--CCceEEEee
Q 020073 233 VMLALGKEGIIVNVGRGAVIDENEMVRCLVR--GEIAGAGLD 272 (331)
Q Consensus 233 ~l~~mk~ga~lIn~srg~~vd~~al~~aL~~--~~i~ga~lD 272 (331)
.++.+++|.++||+|....-..+.+.+.+.+ ..+. .+|
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~--~lD 443 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIK--LVD 443 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcE--EEE
Confidence 7888999999999999998888889999988 5554 455
No 53
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.91 E-value=4.3e-09 Score=97.36 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=96.0
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhc--
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMI-- 229 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li-- 229 (331)
..+.++||+||+|.||..++..|...|++|++|||+.+. .+.....+..|+.+.||+|+.++|.....+.++
T Consensus 32 ~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g 111 (327)
T KOG0409|consen 32 TPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLG 111 (327)
T ss_pred CcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcC
Confidence 346789999999999999999999999999999998765 355567899999999999999999998888877
Q ss_pred cHHHHhcCCCCcEE-EEcCCCCccCHHHHHHHHHhCCceEEEee
Q 020073 230 NREVMLALGKEGII-VNVGRGAVIDENEMVRCLVRGEIAGAGLD 272 (331)
Q Consensus 230 ~~~~l~~mk~ga~l-In~srg~~vd~~al~~aL~~~~i~ga~lD 272 (331)
....++..++|... |+.+.-+.--...+.+++.....+ .+|
T Consensus 112 ~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vD 153 (327)
T KOG0409|consen 112 KSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVD 153 (327)
T ss_pred CCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEe
Confidence 45577777888777 899988777778899999988765 455
No 54
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.90 E-value=6e-09 Score=104.08 Aligned_cols=115 Identities=18% Similarity=0.236 Sum_probs=93.3
Q ss_pred eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------C---C--ccccCCHHhhh---cCCCEEEEeccCChhhhhh
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------V---P--YAFYSNVCELA---ANSDALIICCALTDQTRRM 228 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~---~--~~~~~~l~ell---~~aDiV~l~~P~t~~t~~l 228 (331)
.|||||+|.||+.+|++|...|++|.+|||++.. . + .....++.++. +++|+|++++|..+.+..+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 3899999999999999999999999999998764 1 1 22345676665 5799999999998888888
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCC
Q 020073 229 INREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEP 278 (331)
Q Consensus 229 i~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP 278 (331)
+ .+.+..+++|.++||++.+..-|.....+.+.+..+.....=|...++
T Consensus 81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~ 129 (467)
T TIGR00873 81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEE 129 (467)
T ss_pred H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHH
Confidence 8 457788999999999999998998999999998888755444555443
No 55
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.88 E-value=2.1e-08 Score=94.48 Aligned_cols=99 Identities=18% Similarity=0.225 Sum_probs=75.4
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCCC-----------------------------ccccCCHHhhhcCC
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVP-----------------------------YAFYSNVCELAANS 212 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----------------------------~~~~~~l~ell~~a 212 (331)
++|+|||+|.||..+|+.+...|++|+++|+++.... .....+-.+.+++|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 6899999999999999999999999999998764310 01112223568999
Q ss_pred CEEEEeccCChhhhhhccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHh
Q 020073 213 DALIICCALTDQTRRMINREVMLALGKEGIIV-NVGRGAVIDENEMVRCLVR 263 (331)
Q Consensus 213 DiV~l~~P~t~~t~~li~~~~l~~mk~ga~lI-n~srg~~vd~~al~~aL~~ 263 (331)
|+|+.|+|.+++.+..+-++..+.++++++++ |+|.- ....+.+.+..
T Consensus 85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i---~~~~l~~~~~~ 133 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSI---SITRLASATQR 133 (295)
T ss_pred CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCC---CHHHHHhhcCC
Confidence 99999999999988887777777789999887 66654 34456665543
No 56
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.88 E-value=2.8e-08 Score=94.22 Aligned_cols=136 Identities=20% Similarity=0.264 Sum_probs=88.1
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC------CCc--cccCCHHhhhcCCCEEEEeccCChhhhhhc
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP------VPY--AFYSNVCELAANSDALIICCALTDQTRRMI 229 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~------~~~--~~~~~l~ell~~aDiV~l~~P~t~~t~~li 229 (331)
..++|+|||+|.||..+|+.++..|. +|+++++++.. .+. ....++++.++++|+|++|+|.. .+..++
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~ 83 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA 83 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH
Confidence 34689999999999999999998885 89999997643 121 22356788899999999999964 334444
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEe-ecCCCCC---CCC-CccccCCceEEcCCCCC
Q 020073 230 NREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGL-DVFENEP---YVP-KELLELDNVVLQPHRAV 298 (331)
Q Consensus 230 ~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~l-DV~~~EP---~~~-~~L~~~~nvilTPH~a~ 298 (331)
++....++++.++++++..+.--.+++.+.+.. .+...+. -++..|- ... .+|+.-.++++||+-++
T Consensus 84 -~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~ 155 (307)
T PRK07502 84 -AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT 155 (307)
T ss_pred -HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC
Confidence 445567899999999977553222333333322 2221111 2233221 111 25777788999996554
No 57
>PLN02712 arogenate dehydrogenase
Probab=98.85 E-value=2.7e-08 Score=103.48 Aligned_cols=104 Identities=23% Similarity=0.396 Sum_probs=78.1
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhh-cCCCEEEEeccCChhhhhhccH
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELA-ANSDALIICCALTDQTRRMINR 231 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell-~~aDiV~l~~P~t~~t~~li~~ 231 (331)
+-+.++|||||+|.||+.+|+.++.+|++|++++++... .+.....++++++ .++|+|++|+|. ..+..++..
T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~ 127 (667)
T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKS 127 (667)
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHh
Confidence 345578999999999999999999999999999987432 2333456788865 569999999995 577888866
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 020073 232 EVMLALGKEGIIVNVGRGAVIDENEMVRCLV 262 (331)
Q Consensus 232 ~~l~~mk~ga~lIn~srg~~vd~~al~~aL~ 262 (331)
-.+..+++|++++|+++-+..--+++.+.+.
T Consensus 128 l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~ 158 (667)
T PLN02712 128 LPLQRLKRNTLFVDVLSVKEFAKNLLLDYLP 158 (667)
T ss_pred hhhhcCCCCeEEEECCCCcHHHHHHHHHhcC
Confidence 4446789999999998666333334444443
No 58
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.85 E-value=9.5e-09 Score=97.71 Aligned_cols=91 Identities=24% Similarity=0.281 Sum_probs=69.0
Q ss_pred CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCC-CC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073 159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK-KP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINR 231 (331)
Q Consensus 159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~-~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~ 231 (331)
|+|++|||||+|+||+++|+.|+.+|++|+++++.. .. .+.. ..+..+++++||+|++++|.... ...+.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~-~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~ 78 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFK-VGTVEEAIPQADLIMNLLPDEVQ-HEVYEA 78 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCE-ECCHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence 578999999999999999999999999887654432 22 2222 34688899999999999995533 334456
Q ss_pred HHHhcCCCCcEEEEcCCCCcc
Q 020073 232 EVMLALGKEGIIVNVGRGAVI 252 (331)
Q Consensus 232 ~~l~~mk~ga~lIn~srg~~v 252 (331)
+....++++. +|.++.|--+
T Consensus 79 ei~~~l~~g~-iVs~aaG~~i 98 (314)
T TIGR00465 79 EIQPLLKEGK-TLGFSHGFNI 98 (314)
T ss_pred HHHhhCCCCc-EEEEeCCccH
Confidence 6677788886 7888888644
No 59
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.84 E-value=1.3e-08 Score=96.63 Aligned_cols=83 Identities=25% Similarity=0.322 Sum_probs=69.2
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh-cCC
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVML-ALG 238 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~-~mk 238 (331)
.+++|+|||+|.||+++|++|...|++|.+|+|+.. .++.++++++|+|++++|. ...+.+++. ... .++
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------~~~~~~~~~advvi~~vp~-~~~~~v~~~-l~~~~~~ 73 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------LSLAAVLADADVIVSAVSM-KGVRPVAEQ-VQALNLP 73 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------CCHHHHHhcCCEEEEECCh-HHHHHHHHH-HHHhcCC
Confidence 356899999999999999999999999999998753 4788999999999999997 477777733 223 478
Q ss_pred CCcEEEEcCCCCc
Q 020073 239 KEGIIVNVGRGAV 251 (331)
Q Consensus 239 ~ga~lIn~srg~~ 251 (331)
+++++|++++|-.
T Consensus 74 ~~~ivi~~s~gi~ 86 (308)
T PRK14619 74 PETIIVTATKGLD 86 (308)
T ss_pred CCcEEEEeCCccc
Confidence 8999999988543
No 60
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.84 E-value=4.2e-09 Score=103.04 Aligned_cols=103 Identities=22% Similarity=0.238 Sum_probs=77.2
Q ss_pred cccCCCCCCC-ccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCC------CC-----CCccccCCHHhhhcCCCE
Q 020073 147 WSKIGDYPLG-SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK------KP-----VPYAFYSNVCELAANSDA 214 (331)
Q Consensus 147 w~~~~~~~~~-~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~------~~-----~~~~~~~~l~ell~~aDi 214 (331)
|.+. .++.+ ..|+||+|+|||+|++|++.|..|+..|.+|++--|.. .. .......++.|++++||+
T Consensus 22 ~~r~-ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADv 100 (487)
T PRK05225 22 MDRD-EFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADL 100 (487)
T ss_pred cchh-hccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCE
Confidence 6543 34332 46999999999999999988888888888887444332 11 122234689999999999
Q ss_pred EEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccC
Q 020073 215 LIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVID 253 (331)
Q Consensus 215 V~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd 253 (331)
|++.+|.+ + ++.+.++.++.||+|+.|. .|.|=-+.
T Consensus 101 VviLlPDt-~-q~~v~~~i~p~LK~Ga~L~-fsHGFni~ 136 (487)
T PRK05225 101 VINLTPDK-Q-HSDVVRAVQPLMKQGAALG-YSHGFNIV 136 (487)
T ss_pred EEEcCChH-H-HHHHHHHHHhhCCCCCEEE-ecCCceee
Confidence 99999999 3 7778899999999999864 45665433
No 61
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.83 E-value=7.2e-09 Score=88.39 Aligned_cols=89 Identities=21% Similarity=0.306 Sum_probs=63.8
Q ss_pred CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073 159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMINR 231 (331)
Q Consensus 159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~ 231 (331)
|+||+|+|||+|+.|++.|..|+..|.+|++..|...+ .++ ...++.|+.++||+|++.+|... -..+..+
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf-~v~~~~eAv~~aDvV~~L~PD~~-q~~vy~~ 79 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGF-EVMSVAEAVKKADVVMLLLPDEV-QPEVYEE 79 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT--ECCEHHHHHHC-SEEEE-S-HHH-HHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCC-eeccHHHHHhhCCEEEEeCChHH-HHHHHHH
Confidence 57999999999999999999999999999988776653 233 34689999999999999999543 3445567
Q ss_pred HHHhcCCCCcEEEEcCCCC
Q 020073 232 EVMLALGKEGIIVNVGRGA 250 (331)
Q Consensus 232 ~~l~~mk~ga~lIn~srg~ 250 (331)
+....||+|+.|+ .+.|-
T Consensus 80 ~I~p~l~~G~~L~-fahGf 97 (165)
T PF07991_consen 80 EIAPNLKPGATLV-FAHGF 97 (165)
T ss_dssp HHHHHS-TT-EEE-ESSSH
T ss_pred HHHhhCCCCCEEE-eCCcc
Confidence 7888999999866 34443
No 62
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.81 E-value=3.8e-08 Score=92.08 Aligned_cols=130 Identities=22% Similarity=0.229 Sum_probs=83.9
Q ss_pred eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc-ccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA-FYSNVCELAANSDALIICCALTDQTRRMINREVML 235 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~-~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~ 235 (331)
+|+|||+|.||+.+|+.|+..|.+|.+|++++.. .+.. ...+..+.++++|+|++|+|... ...++ ++...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~~-~~l~~ 79 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPPS-EQLIP 79 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHHH-HHHHH
Confidence 6999999999999999999999999999987643 1111 12222356889999999999543 34444 55667
Q ss_pred cCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEee-cCCCCCCC-C---CccccCCceEEcCCCCC
Q 020073 236 ALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLD-VFENEPYV-P---KELLELDNVVLQPHRAV 298 (331)
Q Consensus 236 ~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lD-V~~~EP~~-~---~~L~~~~nvilTPH~a~ 298 (331)
.+++++++++++.-+.- .++++........+.- ++..|... . ..|+.-.++++||+-.+
T Consensus 80 ~l~~~~ii~d~~Svk~~----~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~ 143 (279)
T PRK07417 80 ALPPEAIVTDVGSVKAP----IVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENT 143 (279)
T ss_pred hCCCCcEEEeCcchHHH----HHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCC
Confidence 78999999999875532 2333332211111111 22222110 0 13777889999997654
No 63
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.81 E-value=9.1e-08 Score=89.47 Aligned_cols=131 Identities=27% Similarity=0.331 Sum_probs=90.2
Q ss_pred CceEEEEecChHHHHHHHHHhhCCCEEEEE--CCCCCC------CCcc--ccCCH-HhhhcCCCEEEEeccCChhhhhhc
Q 020073 161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYN--SRSKKP------VPYA--FYSNV-CELAANSDALIICCALTDQTRRMI 229 (331)
Q Consensus 161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~--~~~~~~------~~~~--~~~~l-~ell~~aDiV~l~~P~t~~t~~li 229 (331)
.++|+|+|+|.||+.+|+.++..|..+.++ +++... .+.. ...+. .+...++|+|++++|-. .|..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~-~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE-ATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH-HHHHHH
Confidence 468999999999999999999999977544 444322 1221 11233 67788899999999954 566666
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCC----CCccccCCceEEcCCCCCC
Q 020073 230 NREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYV----PKELLELDNVVLQPHRAVF 299 (331)
Q Consensus 230 ~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~----~~~L~~~~nvilTPH~a~~ 299 (331)
++....+|+|++++++++-+----+++.+.+..+. .+-..-|.- ..+++....+++||.-...
T Consensus 82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~------~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~ 148 (279)
T COG0287 82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV------RFVGGHPMFGPEADAGLFENAVVVLTPSEGTE 148 (279)
T ss_pred -HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC------eeEecCCCCCCcccccccCCCEEEEcCCCCCC
Confidence 44555799999999999877555555555553322 222334532 2368888999999965443
No 64
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.78 E-value=7e-08 Score=93.58 Aligned_cols=129 Identities=23% Similarity=0.242 Sum_probs=88.0
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------C--Cc--cccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------V--PY--AFYSNVCELAANSDALIICCALTDQTRRMINR 231 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~--~~--~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~ 231 (331)
++|+|||+|.||+++|+.++..|++|.++++++.. . +. ....++++++++||+|++|+|.. .+..++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl~- 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALLA- 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHHH-
Confidence 47999999999999999999999988888776543 1 11 12356788999999999999964 5677763
Q ss_pred HHHh-cCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCC----------CccccCCceEEcCCCCC
Q 020073 232 EVML-ALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP----------KELLELDNVVLQPHRAV 298 (331)
Q Consensus 232 ~~l~-~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~----------~~L~~~~nvilTPH~a~ 298 (331)
+... .+++++++++++.-+.-..+++.+.+.. ... .++. -|... ..|+.....++||+-..
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~-~~~--~ig~---HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~ 150 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEALLGD-LIR--FVGG---HPMAGSHKSGVAAARADLFENAPWVLTPDDHT 150 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHhcCC-CCe--EEee---CCcCcCchhhHHHhcHHHHCCCcEEEecCCCC
Confidence 3333 4789999999998775444444433221 222 2222 13211 24777788899996643
No 65
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.75 E-value=5.4e-08 Score=91.42 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=80.1
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC----C---------C-----------------ccccCCHHhhhcC
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP----V---------P-----------------YAFYSNVCELAAN 211 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----~---------~-----------------~~~~~~l~ell~~ 211 (331)
++|+|||+|.||..+|..+...|++|++||+++.. . + .....++.+.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 57999999999999999999999999999987543 0 0 0123567889999
Q ss_pred CCEEEEeccCChhhhhhccHHHHhcCCCCcEE-EEcCCCCccCHHHHHHHHHhCCceEEEeecC
Q 020073 212 SDALIICCALTDQTRRMINREVMLALGKEGII-VNVGRGAVIDENEMVRCLVRGEIAGAGLDVF 274 (331)
Q Consensus 212 aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~l-In~srg~~vd~~al~~aL~~~~i~ga~lDV~ 274 (331)
||+|+.|+|...+.+..+-.+..+.+++++++ +|+|.-. ...+.+.++. .-+..++..|
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~---~~~l~~~~~~-~~r~~g~h~~ 141 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMS---PTEIASFTKR-PERVIAMHFF 141 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCC-cccEEEEecC
Confidence 99999999988776655545566678999876 7887644 3556665533 2233466655
No 66
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.75 E-value=1.7e-08 Score=98.13 Aligned_cols=90 Identities=17% Similarity=0.231 Sum_probs=73.2
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCc------cccCCHHhhhcCCCEEEEeccCC-h
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPY------AFYSNVCELAANSDALIICCALT-D 223 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~------~~~~~l~ell~~aDiV~l~~P~t-~ 223 (331)
.+.++++.|+|+|.+|+.+++.++.+|++|.++|++... .+. ....++.+.++++|+|+.+++.+ .
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 367888999999999999999999999999999987543 111 01135778889999999998653 2
Q ss_pred hhhhhccHHHHhcCCCCcEEEEcC
Q 020073 224 QTRRMINREVMLALGKEGIIVNVG 247 (331)
Q Consensus 224 ~t~~li~~~~l~~mk~ga~lIn~s 247 (331)
.+..+++++.++.||+++++||++
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEe
Confidence 356689999999999999999997
No 67
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.74 E-value=6.3e-08 Score=92.31 Aligned_cols=100 Identities=14% Similarity=0.156 Sum_probs=79.6
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----------------C----Cc-----cccCCHHhhhcCCCEE
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------------V----PY-----AFYSNVCELAANSDAL 215 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------------~----~~-----~~~~~l~ell~~aDiV 215 (331)
++|+|||.|.||..+|..+...|++|++||++++. . +. ....++++++++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 68999999999999999999999999999987542 0 00 2245788999999999
Q ss_pred EEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 020073 216 IICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVR 263 (331)
Q Consensus 216 ~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~ 263 (331)
+-|+|.+.+.+.-+-++.-+.++++++ |.++..+ +...++.+.+..
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~aI-laSnTS~-l~~s~la~~~~~ 133 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAI-IASSTSG-LLPTDFYARATH 133 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCeE-EEECCCc-cCHHHHHHhcCC
Confidence 999999999888887888888999985 4444443 466677777643
No 68
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.73 E-value=8.4e-08 Score=94.96 Aligned_cols=128 Identities=17% Similarity=0.180 Sum_probs=90.5
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCcc----------------ccCCHHhhhcCCCEEEEecc
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYA----------------FYSNVCELAANSDALIICCA 220 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~----------------~~~~l~ell~~aDiV~l~~P 220 (331)
.+|||||+|.||..+|..+.. |++|++||+++.+ .+.. ...+..+.+++||++++|+|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vp 85 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVP 85 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcC
Confidence 679999999999999999877 7999999998765 1111 12333457899999999999
Q ss_pred CC------hhhhhhc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC--CceEEEee----cCCCCCCCCC----
Q 020073 221 LT------DQTRRMI--NREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG--EIAGAGLD----VFENEPYVPK---- 282 (331)
Q Consensus 221 ~t------~~t~~li--~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~--~i~ga~lD----V~~~EP~~~~---- 282 (331)
.. +....+. .....+.+++|.++|+.|.-..-..+.+++.+... .+. + .| +|.+||..+.
T Consensus 86 tp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~-~-~~~~~~~~~PE~v~~G~a~~ 163 (425)
T PRK15182 86 TPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMT-F-NQDFYVGYSPERINPGDKKH 163 (425)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCC-c-CCCeeEeeCCCcCCCCcccc
Confidence 65 3335555 34566788999999999998887777654444332 221 1 33 4667887542
Q ss_pred ccccCCceEE
Q 020073 283 ELLELDNVVL 292 (331)
Q Consensus 283 ~L~~~~nvil 292 (331)
.+..+|.|+.
T Consensus 164 ~~~~~~riv~ 173 (425)
T PRK15182 164 RLTNIKKITS 173 (425)
T ss_pred cccCCCeEEE
Confidence 4777788854
No 69
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.73 E-value=1.7e-07 Score=86.83 Aligned_cols=98 Identities=20% Similarity=0.318 Sum_probs=75.2
Q ss_pred ceEEEEecChHHHHHHHHHhhCCC----EEEEE-CCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGC----NVLYN-SRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN 230 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~-~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~ 230 (331)
.+|||||+|.||+++++.|...|+ +|+++ +|++.. .+.....+..+++++||+|++|+| ......++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl- 78 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL- 78 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence 369999999999999999998887 88888 887654 233345678888999999999996 55667766
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 020073 231 REVMLALGKEGIIVNVGRGAVIDENEMVRCLVR 263 (331)
Q Consensus 231 ~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~ 263 (331)
.+....++++.++|++.-| +..+.+.+.+..
T Consensus 79 ~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~ 109 (266)
T PLN02688 79 TELRPLLSKDKLLVSVAAG--ITLADLQEWAGG 109 (266)
T ss_pred HHHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence 3455667889999988665 466677766543
No 70
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.73 E-value=2.3e-07 Score=89.99 Aligned_cols=122 Identities=18% Similarity=0.210 Sum_probs=85.4
Q ss_pred CCCceEEEEec-ChHHHHHHHHHhh-CCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccH--HHH
Q 020073 159 LGGKRVGIVGL-GNIGLQVAKRLQA-FGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINR--EVM 234 (331)
Q Consensus 159 l~g~~vgIiG~-G~IG~~~A~~l~~-~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~--~~l 234 (331)
+.-.+|+|||+ |.||+.+|+.++. +|.+|+++|+... ...++.+.+++||+|++|+|.. .+..++.+ ...
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----~~~~~~~~v~~aDlVilavPv~-~~~~~l~~l~~~~ 75 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----GSLDPATLLQRADVLIFSAPIR-HTAALIEEYVALA 75 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----ccCCHHHHhcCCCEEEEeCCHH-HHHHHHHHHhhhh
Confidence 34578999999 9999999999995 5889999998522 2346788899999999999954 45555532 111
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCC---CccccCCceEEcCC
Q 020073 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP---KELLELDNVVLQPH 295 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~---~~L~~~~nvilTPH 295 (331)
..++++++++++++-+- ..++++.... .++-..-|.-- ..+++..++++||.
T Consensus 76 ~~l~~~~iVtDVgSvK~----~i~~~~~~~~-----~~fVG~HPMaG~E~s~lf~g~~~iltp~ 130 (370)
T PRK08818 76 GGRAAGQLWLDVTSIKQ----APVAAMLASQ-----AEVVGLHPMTAPPKSPTLKGRVMVVCEA 130 (370)
T ss_pred cCCCCCeEEEECCCCcH----HHHHHHHhcC-----CCEEeeCCCCCCCCCcccCCCeEEEeCC
Confidence 34799999999998773 2222222221 12334455421 25788889999996
No 71
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.72 E-value=1.5e-07 Score=92.94 Aligned_cols=103 Identities=16% Similarity=0.217 Sum_probs=75.9
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCc--cccCCHHhh---------------hcCCCEEEEec
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPY--AFYSNVCEL---------------AANSDALIICC 219 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~--~~~~~l~el---------------l~~aDiV~l~~ 219 (331)
++|+|||+|.||..+|..|...|++|++||+++.. .+. .....++++ +++||+|++|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 68999999999999999999999999999987764 111 112234444 33799999999
Q ss_pred cCC------hhhhhhc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073 220 ALT------DQTRRMI--NREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG 264 (331)
Q Consensus 220 P~t------~~t~~li--~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~ 264 (331)
|.. +....+. -......+++|+++|+.|....=..+.+...+.+.
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 964 1222222 24566778999999999998877777777766653
No 72
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.72 E-value=1.3e-08 Score=79.45 Aligned_cols=84 Identities=27% Similarity=0.430 Sum_probs=62.0
Q ss_pred eEEEEecChHHHHHHHHHhhCC---CEEE-EECCCCCC-------CCccccC-CHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFG---CNVL-YNSRSKKP-------VPYAFYS-NVCELAANSDALIICCALTDQTRRMIN 230 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G---~~V~-~~~~~~~~-------~~~~~~~-~l~ell~~aDiV~l~~P~t~~t~~li~ 230 (331)
||||||+|+||+++++.+...| .+|. +++|++++ .+..... +..+++++||+|++|+|.. ....++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~-~~~~v~- 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQ-QLPEVL- 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GG-GHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHH-HHHHHH-
Confidence 6999999999999999999999 8998 55888764 2222233 7899999999999999844 334444
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q 020073 231 REVMLALGKEGIIVNVGRG 249 (331)
Q Consensus 231 ~~~l~~mk~ga~lIn~srg 249 (331)
++. ....++.++|++.-|
T Consensus 79 ~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH-HHHHTTSEEEEESTT
T ss_pred HHH-hhccCCCEEEEeCCC
Confidence 333 556788999988654
No 73
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.72 E-value=2.6e-07 Score=90.05 Aligned_cols=91 Identities=21% Similarity=0.276 Sum_probs=71.2
Q ss_pred CCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCC
Q 020073 160 GGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALG 238 (331)
Q Consensus 160 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk 238 (331)
..++|+||| +|.||+.+|+.|+..|.+|.+|++.. ..+.++++++||+|++|+|... +..++ ++. ..++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~-------~~~~~~~~~~aDlVilavP~~~-~~~~~-~~l-~~l~ 166 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD-------WDRAEDILADAGMVIVSVPIHL-TEEVI-ARL-PPLP 166 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc-------chhHHHHHhcCCEEEEeCcHHH-HHHHH-HHH-hCCC
Confidence 458899999 99999999999999999999999753 1367788999999999999764 45556 334 4489
Q ss_pred CCcEEEEcCCCCccCHHHHHHH
Q 020073 239 KEGIIVNVGRGAVIDENEMVRC 260 (331)
Q Consensus 239 ~ga~lIn~srg~~vd~~al~~a 260 (331)
+|++++++++.+..--.++.+.
T Consensus 167 ~~~iv~Dv~SvK~~~~~~~~~~ 188 (374)
T PRK11199 167 EDCILVDLTSVKNAPLQAMLAA 188 (374)
T ss_pred CCcEEEECCCccHHHHHHHHHh
Confidence 9999999988654333444443
No 74
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.70 E-value=4.8e-08 Score=92.37 Aligned_cols=97 Identities=24% Similarity=0.335 Sum_probs=80.6
Q ss_pred CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHH
Q 020073 159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREV 233 (331)
Q Consensus 159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~ 233 (331)
+.||++.|.|||..|+.+|+++++.|++|+++.-.+-+ ........++++...+|+++.++- .++.|..++
T Consensus 207 iaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~TG----nkdVi~~eh 282 (420)
T COG0499 207 LAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTATG----NKDVIRKEH 282 (420)
T ss_pred ecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEccC----CcCccCHHH
Confidence 79999999999999999999999999999998766543 222334679999999999998753 567999999
Q ss_pred HhcCCCCcEEEEcCCCCc-cCHHHHHH
Q 020073 234 MLALGKEGIIVNVGRGAV-IDENEMVR 259 (331)
Q Consensus 234 l~~mk~ga~lIn~srg~~-vd~~al~~ 259 (331)
|..||+|+++-|.+.=.+ +|-..|.+
T Consensus 283 ~~~MkDgaIl~N~GHFd~EI~~~~L~~ 309 (420)
T COG0499 283 FEKMKDGAILANAGHFDVEIDVAGLEE 309 (420)
T ss_pred HHhccCCeEEecccccceeccHHHHHH
Confidence 999999999999987555 56666543
No 75
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.69 E-value=6.4e-08 Score=90.96 Aligned_cols=131 Identities=18% Similarity=0.198 Sum_probs=92.6
Q ss_pred CccCCCceEEEEecC-hHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073 156 GSKLGGKRVGIVGLG-NIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 156 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
+.++.||+|+|||.| .||+.+|.+|...|++|+++++.. .++.++.++||+|+++++.. +++.+..
T Consensus 154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t--------~~l~e~~~~ADIVIsavg~~----~~v~~~~- 220 (301)
T PRK14194 154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS--------TDAKALCRQADIVVAAVGRP----RLIDADW- 220 (301)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC--------CCHHHHHhcCCEEEEecCCh----hcccHhh-
Confidence 447999999999996 999999999999999999997643 37999999999999999754 3566555
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhC--CceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHH
Q 020073 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRG--EIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAV 312 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~--~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~ 312 (331)
+|+|+++||+|--.+. .+| ++ .-||-..+- .. .--.+||=-||.-.-+..-+.+.++
T Consensus 221 --ik~GaiVIDvgin~~~---------~~g~~kl---~GDvdf~~~------~~-~a~~iTPVPGGVGp~Tva~L~~N~~ 279 (301)
T PRK14194 221 --LKPGAVVIDVGINRID---------DDGRSRL---VGDVDFDSA------LP-VVSAITPVPGGVGPMTIAFLMKNTV 279 (301)
T ss_pred --ccCCcEEEEecccccC---------CCCCcce---ecccchHHH------Hh-hcceecCCCCchhHHHHHHHHHHHH
Confidence 7999999999954431 123 33 456632111 11 1235888777766655555555555
Q ss_pred HHHHHHHc
Q 020073 313 GNLEALFS 320 (331)
Q Consensus 313 ~nl~~~~~ 320 (331)
+..+++..
T Consensus 280 ~a~~~~~~ 287 (301)
T PRK14194 280 TAARLQAH 287 (301)
T ss_pred HHHHHHHH
Confidence 55555543
No 76
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.67 E-value=3.6e-07 Score=85.79 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=91.4
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC----C--------------C-------------ccccCCHHhhhc
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP----V--------------P-------------YAFYSNVCELAA 210 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----~--------------~-------------~~~~~~l~ell~ 210 (331)
++|+|||.|.||..+|..+...|.+|+.++++.+. . . .....+++++++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 57999999999999999999899999999987542 0 0 012457888899
Q ss_pred CCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCce
Q 020073 211 NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNV 290 (331)
Q Consensus 211 ~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nv 290 (331)
.||+|+.|+|...+.+.-+-++.-+.++++++++..+++- ....+.+.+.... +..++-. ..|.+..+.|
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~--~~~~~~~~~~~~~-r~vg~Hf-------~~p~~~~~lv 153 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTL--LPSQFAEATGRPE-KFLALHF-------ANEIWKNNTA 153 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccC--CHHHHHhhcCCcc-cEEEEcC-------CCCCCcCCeE
Confidence 9999999999776555544455666688888885444433 4456666654322 2233321 2346677888
Q ss_pred EEcCCCCCCcHHHHHHH
Q 020073 291 VLQPHRAVFTSECFVDL 307 (331)
Q Consensus 291 ilTPH~a~~t~~~~~~~ 307 (331)
.+.|+-.. +.++...+
T Consensus 154 evv~~~~t-~~~~~~~~ 169 (287)
T PRK08293 154 EIMGHPGT-DPEVFDTV 169 (287)
T ss_pred EEeCCCCC-CHHHHHHH
Confidence 88886553 33444433
No 77
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.62 E-value=1.4e-07 Score=88.11 Aligned_cols=125 Identities=17% Similarity=0.183 Sum_probs=89.9
Q ss_pred CccCCCceEEEEecChH-HHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073 156 GSKLGGKRVGIVGLGNI-GLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 156 ~~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
+.++.|+++.|||.|.+ |+.+|..|...|++|+++... ..++.+.+++||+|++++| +.++++.+.
T Consensus 153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------t~~l~~~~~~ADIVV~avG----~~~~i~~~~- 219 (285)
T PRK14189 153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------TRDLAAHTRQADIVVAAVG----KRNVLTADM- 219 (285)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------CCCHHHHhhhCCEEEEcCC----CcCccCHHH-
Confidence 34789999999999999 999999999999999887532 2478999999999999998 456898854
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN 314 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n 314 (331)
+|+|+++||+|--.+. +|++ .-||-..+- .+ .--.+||=-||.-.-+..-+.+.+++-
T Consensus 220 --ik~gavVIDVGin~~~----------~gkl---~GDVd~~~v------~~-~a~~iTPVPGGVGp~T~a~Ll~N~~~a 277 (285)
T PRK14189 220 --VKPGATVIDVGMNRDD----------AGKL---CGDVDFAGV------KE-VAGYITPVPGGVGPMTITMLLVNTIEA 277 (285)
T ss_pred --cCCCCEEEEccccccC----------CCCe---eCCccHHHH------Hh-hceEecCCCCCchHHHHHHHHHHHHHH
Confidence 7999999999965532 2554 456631111 11 123689977776655444444444443
Q ss_pred H
Q 020073 315 L 315 (331)
Q Consensus 315 l 315 (331)
.
T Consensus 278 ~ 278 (285)
T PRK14189 278 A 278 (285)
T ss_pred H
Confidence 3
No 78
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.62 E-value=1.6e-07 Score=81.51 Aligned_cols=115 Identities=22% Similarity=0.296 Sum_probs=85.8
Q ss_pred ccCCCceEEEEecChH-HHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073 157 SKLGGKRVGIVGLGNI-GLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVML 235 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~ 235 (331)
.++.|+++.|||.|.+ |..+|+.|...|.+|++.+|+. .++.+.+.++|+|+.+++.. ++|+++.
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------~~l~~~l~~aDiVIsat~~~----~ii~~~~-- 105 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------KNLKEHTKQADIVIVAVGKP----GLVKGDM-- 105 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------hhHHHHHhhCCEEEEcCCCC----ceecHHH--
Confidence 3689999999999996 8889999999999999988752 46889999999999997643 2788876
Q ss_pred cCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHH
Q 020073 236 ALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSEC 303 (331)
Q Consensus 236 ~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~ 303 (331)
++++.++||+|...-+| ..++++. -|| .. +..... ...+||=-||...-+
T Consensus 106 -~~~~~viIDla~prdvd-------~~~~~~~---G~~-d~-----~~~~~~-~~~~~~~pggvgp~t 155 (168)
T cd01080 106 -VKPGAVVIDVGINRVPD-------KSGGKLV---GDV-DF-----ESAKEK-ASAITPVPGGVGPMT 155 (168)
T ss_pred -ccCCeEEEEccCCCccc-------ccCCCee---CCc-CH-----HHHHhh-ccCcCCCCCcChHHH
Confidence 58899999999998888 4555554 233 11 111122 445777666665533
No 79
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.61 E-value=3.6e-07 Score=81.47 Aligned_cols=104 Identities=20% Similarity=0.317 Sum_probs=78.9
Q ss_pred CccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCccccCCHHhhhc-CCCEEEEeccCChhhhh
Q 020073 156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYAFYSNVCELAA-NSDALIICCALTDQTRR 227 (331)
Q Consensus 156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~~~~l~ell~-~aDiV~l~~P~t~~t~~ 227 (331)
+.+++|++++|+|+|+||+.+|+.|..+|++|+++|++... .+... .+.++++. ++|+++.|.. .+
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~-v~~~~l~~~~~Dv~vp~A~-----~~ 96 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATV-VAPEEIYSVDADVFAPCAL-----GG 96 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEE-EcchhhccccCCEEEeccc-----cc
Confidence 34689999999999999999999999999999999987653 12221 23455554 7998886654 35
Q ss_pred hccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073 228 MINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA 267 (331)
Q Consensus 228 li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ 267 (331)
+|+++.++.|+. .+++..+-+.+-| ..-.+.|++..+.
T Consensus 97 ~I~~~~~~~l~~-~~v~~~AN~~~~~-~~~~~~L~~~Gi~ 134 (200)
T cd01075 97 VINDDTIPQLKA-KAIAGAANNQLAD-PRHGQMLHERGIL 134 (200)
T ss_pred ccCHHHHHHcCC-CEEEECCcCccCC-HhHHHHHHHCCCE
Confidence 888888888874 5778888888776 5566777777765
No 80
>PRK08507 prephenate dehydrogenase; Validated
Probab=98.61 E-value=6e-07 Score=83.76 Aligned_cols=126 Identities=17% Similarity=0.248 Sum_probs=80.2
Q ss_pred eEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC------CCcc-ccCCHHhhhcCCCEEEEeccCChhhhhhccHHH
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP------VPYA-FYSNVCELAANSDALIICCALTDQTRRMINREV 233 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~------~~~~-~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~ 233 (331)
+|+|||+|.||+.+|+.|+..|. +|+++++++.. .+.. ...+..++. ++|+|++|+|... +...+ .+.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~-~~~~~-~~l 78 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDA-IIEIL-PKL 78 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHH-HHHHH-HHH
Confidence 69999999999999999998775 78999987643 1221 234667765 4999999999653 44455 345
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCC---C---CCCCC-ccccCCceEEcCCCC
Q 020073 234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFEN---E---PYVPK-ELLELDNVVLQPHRA 297 (331)
Q Consensus 234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~---E---P~~~~-~L~~~~nvilTPH~a 297 (331)
.. +++++++++++.- ...+.+.+.... .+..++.... | |.... .+++-..++++|.-+
T Consensus 79 ~~-l~~~~iv~d~gs~----k~~i~~~~~~~~-~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~ 143 (275)
T PRK08507 79 LD-IKENTTIIDLGST----KAKIIESVPKHI-RKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEK 143 (275)
T ss_pred hc-cCCCCEEEECccc----hHHHHHHHHHhc-CCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCC
Confidence 55 8899999997652 344555555431 1112222221 1 21111 366666788888543
No 81
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.60 E-value=3.1e-07 Score=77.74 Aligned_cols=104 Identities=20% Similarity=0.245 Sum_probs=77.8
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCC-CEEEEECCCCCC-------CCc----cccCCHHhhhcCCCEEEEeccCChh-
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFG-CNVLYNSRSKKP-------VPY----AFYSNVCELAANSDALIICCALTDQ- 224 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~-------~~~----~~~~~l~ell~~aDiV~l~~P~t~~- 224 (331)
++.+++++|+|+|.||+.+++.+...| .+|.+++++.+. ... ....+..++++++|+|++++|....
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~ 95 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP 95 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence 466889999999999999999999886 689999987654 111 1245677888999999999997753
Q ss_pred hhh-hccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 020073 225 TRR-MINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEI 266 (331)
Q Consensus 225 t~~-li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i 266 (331)
... .+... .++++.+++|++..+... .+.+.+++..+
T Consensus 96 ~~~~~~~~~---~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~ 133 (155)
T cd01065 96 GDELPLPPS---LLKPGGVVYDVVYNPLET--PLLKEARALGA 133 (155)
T ss_pred CCCCCCCHH---HcCCCCEEEEcCcCCCCC--HHHHHHHHCCC
Confidence 222 23332 268999999998775443 77777777654
No 82
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.60 E-value=5.3e-07 Score=84.84 Aligned_cols=109 Identities=21% Similarity=0.272 Sum_probs=76.7
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCC-----------------C-------------ccccCCHHhhhcC
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV-----------------P-------------YAFYSNVCELAAN 211 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----------------~-------------~~~~~~l~ell~~ 211 (331)
++|+|||.|.||..+|..+...|++|++||++++.. + .....+++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 679999999999999999999999999999875430 1 01224554 5789
Q ss_pred CCEEEEeccCChhhhhhccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHhCCceEEEeecCC
Q 020073 212 SDALIICCALTDQTRRMINREVMLALGKEGIIV-NVGRGAVIDENEMVRCLVRGEIAGAGLDVFE 275 (331)
Q Consensus 212 aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lI-n~srg~~vd~~al~~aL~~~~i~ga~lDV~~ 275 (331)
||+|+.|+|...+.+..+-++..+.++++++++ |+|.-. ...+.+.+... -+..++-.|.
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~~~-~r~~g~h~~~ 144 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATDRP-ERFIGIHFMN 144 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCCc-ccEEEeeccC
Confidence 999999999887755544456667789999988 555433 34676665421 2223455544
No 83
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.59 E-value=8.5e-07 Score=83.02 Aligned_cols=99 Identities=16% Similarity=0.216 Sum_probs=72.9
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCC-----------------C-------------ccccCCHHhhhcC
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV-----------------P-------------YAFYSNVCELAAN 211 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----------------~-------------~~~~~~l~ell~~ 211 (331)
++|+|||+|.||..+|..+...|.+|+++|++++.. + .....+.+ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 579999999999999999999999999999765431 0 01123444 4799
Q ss_pred CCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 020073 212 SDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVR 263 (331)
Q Consensus 212 aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~ 263 (331)
||+|+.|+|...+.+.-+-++.-+.++++++++....| +....+.+.+..
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~ 132 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR 132 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence 99999999987776654445566678999988554444 556678787743
No 84
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.57 E-value=4.4e-07 Score=84.86 Aligned_cols=99 Identities=13% Similarity=0.163 Sum_probs=73.7
Q ss_pred CceEEEEecChHHHHHHHHHhhCC----CEEEEECCCCCC--------CCccccCCHHhhhcCCCEEEEeccCChhhhhh
Q 020073 161 GKRVGIVGLGNIGLQVAKRLQAFG----CNVLYNSRSKKP--------VPYAFYSNVCELAANSDALIICCALTDQTRRM 228 (331)
Q Consensus 161 g~~vgIiG~G~IG~~~A~~l~~~G----~~V~~~~~~~~~--------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~l 228 (331)
+++|+|||+|.||+++|+.|...| .+|++++|+..+ .+.....+..+++.+||+|++|+|.. .....
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~-~~~~v 81 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPK-DVAEA 81 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHH-HHHHH
Confidence 468999999999999999998877 688999987532 13334557888899999999999844 44444
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 020073 229 INREVMLALGKEGIIVNVGRGAVIDENEMVRCLVR 263 (331)
Q Consensus 229 i~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~ 263 (331)
+ .+....++++.++|++.-|- ..+.+.+.+..
T Consensus 82 l-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~~ 113 (279)
T PRK07679 82 L-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQK 113 (279)
T ss_pred H-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcCC
Confidence 4 34445578889999986553 56667766643
No 85
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.56 E-value=1.8e-07 Score=87.35 Aligned_cols=97 Identities=18% Similarity=0.291 Sum_probs=74.7
Q ss_pred ceEEEEecChHHHHHHHHHhhCCC----EEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGC----NVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN 230 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~ 230 (331)
++|||||+|+||+++++.|...|. +|++++|+... .+.....+..+++++||+|++|+| ......++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl- 80 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVI- 80 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHH-
Confidence 579999999999999999987774 69999987654 122334577888999999999998 36666666
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 020073 231 REVMLALGKEGIIVNVGRGAVIDENEMVRCLV 262 (331)
Q Consensus 231 ~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~ 262 (331)
.+.-..++++.++|++.-| ++.+.|.+.+.
T Consensus 81 ~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~ 110 (272)
T PRK12491 81 NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD 110 (272)
T ss_pred HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence 3444556888999999877 46666776664
No 86
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.55 E-value=3e-07 Score=86.50 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=88.1
Q ss_pred ccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEEC-CCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073 157 SKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNS-RSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 157 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~-~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
.++.||+++||| .|.||+.+|.+|...|+.|++++ ++. ++++++++||+|+++++... ++.+..
T Consensus 154 i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------~l~e~~~~ADIVIsavg~~~----~v~~~~- 219 (296)
T PRK14188 154 GDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------DLPAVCRRADILVAAVGRPE----MVKGDW- 219 (296)
T ss_pred CCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------CHHHHHhcCCEEEEecCChh----hcchhe-
Confidence 368999999999 99999999999999999999995 542 58999999999999998653 455544
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN 314 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n 314 (331)
+|+|+++||+|--.+.+.+. .+|+- ...-||-..+ . ...--.+||=-||.-.-+..-+.+.+++-
T Consensus 220 --lk~GavVIDvGin~~~~~~~-----~~g~~-~l~GDvd~~~------v-~~~a~~iTPVPGGVGp~T~a~L~~N~~~a 284 (296)
T PRK14188 220 --IKPGATVIDVGINRIPAPEK-----GEGKT-RLVGDVAFAE------A-AEVAGAITPVPGGVGPMTIACLLANTLTA 284 (296)
T ss_pred --ecCCCEEEEcCCcccCCccc-----cCCCc-eeeCCCCHHH------H-HhhccEecCCCCChhHHHHHHHHHHHHHH
Confidence 89999999998544322000 11421 1345663111 1 11123689987876665544444444443
Q ss_pred H
Q 020073 315 L 315 (331)
Q Consensus 315 l 315 (331)
.
T Consensus 285 ~ 285 (296)
T PRK14188 285 A 285 (296)
T ss_pred H
Confidence 3
No 87
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.54 E-value=4.1e-07 Score=86.97 Aligned_cols=97 Identities=22% Similarity=0.196 Sum_probs=74.5
Q ss_pred CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------C--------C------ccccCCHHhhhcCCCEEEEecc
Q 020073 161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------V--------P------YAFYSNVCELAANSDALIICCA 220 (331)
Q Consensus 161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~--------~------~~~~~~l~ell~~aDiV~l~~P 220 (331)
..+|+|||+|.||..+|..|...|.+|.+|+|+++. . + .....++.++++.+|+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 358999999999999999999999999999997542 1 1 1234578888999999999999
Q ss_pred CChhhhhhccHHHHhcCCCCcEEEEcCCCCc-cC--HHHHHHHHHh
Q 020073 221 LTDQTRRMINREVMLALGKEGIIVNVGRGAV-ID--ENEMVRCLVR 263 (331)
Q Consensus 221 ~t~~t~~li~~~~l~~mk~ga~lIn~srg~~-vd--~~al~~aL~~ 263 (331)
.. .+ ++.++.++++.++|+++.|-- -+ ...+.+.+..
T Consensus 84 ~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 84 SK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred hH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 66 33 445577899999999999732 22 4456666654
No 88
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.54 E-value=1.1e-06 Score=82.79 Aligned_cols=112 Identities=21% Similarity=0.253 Sum_probs=78.5
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCC------------Cc---------------------cccCCHHhh
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV------------PY---------------------AFYSNVCEL 208 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------------~~---------------------~~~~~l~el 208 (331)
++|+|||+|.||..+|..+...|++|+++|++++.. +. ....++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 589999999999999999999999999999876430 00 011234 56
Q ss_pred hcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCC
Q 020073 209 AANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENE 277 (331)
Q Consensus 209 l~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~E 277 (331)
+++||+|+.++|...+.+.-+-++.-+.+++++++++...| +....+.+.+.. .-+..++.-|.+-
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~-~~r~ig~hf~~P~ 148 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER-KDRFIGMHWFNPA 148 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC-cccEEEEecCCCc
Confidence 78999999999987654444434455567899999887777 455667777643 2223455444433
No 89
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.54 E-value=1.5e-06 Score=85.69 Aligned_cols=130 Identities=21% Similarity=0.276 Sum_probs=85.9
Q ss_pred eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----C--------------------C-ccccCCHHhhhcCCCEEE
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----V--------------------P-YAFYSNVCELAANSDALI 216 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~--------------------~-~~~~~~l~ell~~aDiV~ 216 (331)
+|+|||+|.||..+|..|...|++|++||++... . + .....++.+++++||+|+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvi 81 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVII 81 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEE
Confidence 6999999999999999999999999999987643 1 1 122346788899999999
Q ss_pred EeccCChh------hhhhc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHH-HHHhC-CceEEEeec---CCCCCCCCC-
Q 020073 217 ICCALTDQ------TRRMI--NREVMLALGKEGIIVNVGRGAVIDENEMVR-CLVRG-EIAGAGLDV---FENEPYVPK- 282 (331)
Q Consensus 217 l~~P~t~~------t~~li--~~~~l~~mk~ga~lIn~srg~~vd~~al~~-aL~~~-~i~ga~lDV---~~~EP~~~~- 282 (331)
+|+|.... ...+. -....+.+++|.++|+.|.-..=..+.+.+ .+++. .+. .+.|. +.+|...+.
T Consensus 82 i~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~-~~~d~~v~~~Pe~~~~G~ 160 (411)
T TIGR03026 82 ICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLK-LGEDFYLAYNPEFLREGN 160 (411)
T ss_pred EEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCC-CCCCceEEECCCcCCCCC
Confidence 99996532 11222 134556789999999998655545556654 44441 111 13342 244443222
Q ss_pred ---ccccCCceEEc
Q 020073 283 ---ELLELDNVVLQ 293 (331)
Q Consensus 283 ---~L~~~~nvilT 293 (331)
.++..+.+++.
T Consensus 161 ~~~~~~~~~~iv~G 174 (411)
T TIGR03026 161 AVHDLLNPDRIVGG 174 (411)
T ss_pred hhhhhcCCCEEEEe
Confidence 35667777766
No 90
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.53 E-value=8e-08 Score=80.29 Aligned_cols=90 Identities=21% Similarity=0.289 Sum_probs=69.2
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCCE-EEEECCCCCC-------C-C----ccccCCHHhhhcCCCEEEEeccCChh
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCN-VLYNSRSKKP-------V-P----YAFYSNVCELAANSDALIICCALTDQ 224 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~~~-------~-~----~~~~~~l~ell~~aDiV~l~~P~t~~ 224 (331)
+++|+++.|||.|.+|+.++..|...|++ |++++|+.++ . + ...+.++.+.+.++|+|+.++|....
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 68999999999999999999999999996 9999998654 1 1 12345677889999999999876533
Q ss_pred hhhhccHHHHhcCCCCc-EEEEcCCCC
Q 020073 225 TRRMINREVMLALGKEG-IIVNVGRGA 250 (331)
Q Consensus 225 t~~li~~~~l~~mk~ga-~lIn~srg~ 250 (331)
.+.++.++..++.. ++++++...
T Consensus 89 ---~i~~~~~~~~~~~~~~v~Dla~Pr 112 (135)
T PF01488_consen 89 ---IITEEMLKKASKKLRLVIDLAVPR 112 (135)
T ss_dssp ---SSTHHHHTTTCHHCSEEEES-SS-
T ss_pred ---ccCHHHHHHHHhhhhceeccccCC
Confidence 78888887665543 788886543
No 91
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.52 E-value=3.3e-07 Score=85.54 Aligned_cols=103 Identities=20% Similarity=0.251 Sum_probs=76.9
Q ss_pred CCceEEEEecChHHHHHHHHHhh--CCCEEE-EECCCCCC-------CC-ccccCCHHhhhcCCCEEEEeccCChhhhhh
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQA--FGCNVL-YNSRSKKP-------VP-YAFYSNVCELAANSDALIICCALTDQTRRM 228 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~--~G~~V~-~~~~~~~~-------~~-~~~~~~l~ell~~aDiV~l~~P~t~~t~~l 228 (331)
...+|||||+|.||+.+++.+.. .++++. +++++++. .+ ...+.++++++.++|+|++|+|.... .-
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h--~e 82 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL--RA 82 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH--HH
Confidence 35789999999999999999985 478876 67876543 12 13457899999999999999996532 22
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073 229 INREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA 267 (331)
Q Consensus 229 i~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ 267 (331)
+.... ++.|.-++..+.|.+.+.++|.++.+++...
T Consensus 83 ~~~~a---L~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 83 IVEPV---LAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred HHHHH---HHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 22333 4667766778899888889999998886643
No 92
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.50 E-value=5.6e-07 Score=84.59 Aligned_cols=111 Identities=19% Similarity=0.249 Sum_probs=79.1
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----------------CCc-------------cccCCHHhhhcC
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------------VPY-------------AFYSNVCELAAN 211 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------------~~~-------------~~~~~l~ell~~ 211 (331)
++|||||.|.||..+|..+...|++|+.+|++++. .+. ....++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 48999999999999999999999999999988653 000 023456 56899
Q ss_pred CCEEEEeccCChhhhhhccHHHHhcC-CCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCC
Q 020073 212 SDALIICCALTDQTRRMINREVMLAL-GKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFEN 276 (331)
Q Consensus 212 aDiV~l~~P~t~~t~~li~~~~l~~m-k~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~ 276 (331)
||+|+-|+|.+.+.+.-+-+..-+.+ ++++++++.+.+-.+. ++..++.. .=+..++..|.+
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~--~la~~~~~-~~r~~g~hf~~P 147 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIM--KLAAATKR-PGRVLGLHFFNP 147 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHhhcCC-CccEEEEecCCC
Confidence 99999999999998887755443444 8899998877665444 34444432 222346666654
No 93
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=8e-07 Score=80.02 Aligned_cols=111 Identities=21% Similarity=0.261 Sum_probs=93.1
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhh---hcCCCEEEEeccCChhhhhhccHH
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCEL---AANSDALIICCALTDQTRRMINRE 232 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~el---l~~aDiV~l~~P~t~~t~~li~~~ 232 (331)
+++|.||+|+||..+++++..-|.+|++||+++.. .+.....+++++ |....+|-+++|...-|...| .+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi-~~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI-DD 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH-HH
Confidence 46899999999999999999999999999998765 233344566665 567899999999998888877 55
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCC
Q 020073 233 VMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFE 275 (331)
Q Consensus 233 ~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~ 275 (331)
.-..|.+|-++|+-+-..-=|.....+.|..+.|. -+||-.
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~GT 120 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVGT 120 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEeccC
Confidence 66779999999999998888888889999999996 688743
No 94
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.50 E-value=1.6e-06 Score=87.67 Aligned_cols=100 Identities=16% Similarity=0.167 Sum_probs=74.0
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCC-------------------------C-ccccCCHHhhhcCCCEE
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV-------------------------P-YAFYSNVCELAANSDAL 215 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-------------------------~-~~~~~~l~ell~~aDiV 215 (331)
++|||||+|.||..+|..+...|++|++||+++... + .....++.+++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 479999999999999999999999999999876430 0 12345788999999999
Q ss_pred EEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 020073 216 IICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVR 263 (331)
Q Consensus 216 ~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~ 263 (331)
+.++|...+.+.-+-++.-+.++++++| .++..++ ....+.+.+..
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi-~~s~l~~~~~~ 130 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGF-LPSDLQEGMTH 130 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCC-CHHHHHhhcCC
Confidence 9999988776664434444556777765 4444443 35577776644
No 95
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.49 E-value=1.9e-06 Score=81.83 Aligned_cols=126 Identities=17% Similarity=0.139 Sum_probs=80.8
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----------------CC-------------ccccCCHHhhhcC
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------------VP-------------YAFYSNVCELAAN 211 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------------~~-------------~~~~~~l~ell~~ 211 (331)
++|+|||+|.||..+|..+...|.+|++||+++.. .+ .....++.+++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 47999999999999999999999999999998632 01 0234678889999
Q ss_pred CCEEEEeccCChhhhhhccHHHHhcC-CCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCce
Q 020073 212 SDALIICCALTDQTRRMINREVMLAL-GKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNV 290 (331)
Q Consensus 212 aDiV~l~~P~t~~t~~li~~~~l~~m-k~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nv 290 (331)
||+|+.|+|...+...-+-.+ ++.+ ++..++. .+.. ......+.+.+..... ...|-|-+-| +-.+=|
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~-l~~~~~~~~ii~-ssts-~~~~~~la~~~~~~~~--~~~~hp~~p~------~~~~lv 151 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAE-LDALAPPHAILA-SSTS-ALLASAFTEHLAGRER--CLVAHPINPP------YLIPVV 151 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHH-HHHhCCCcceEE-EeCC-CCCHHHHHHhcCCccc--EEEEecCCCc------ccCceE
Confidence 999999999875544433233 3444 4444444 3333 3446667777754332 3344443311 111235
Q ss_pred EEcCCCCC
Q 020073 291 VLQPHRAV 298 (331)
Q Consensus 291 ilTPH~a~ 298 (331)
.++|+-++
T Consensus 152 eiv~~~~t 159 (308)
T PRK06129 152 EVVPAPWT 159 (308)
T ss_pred EEeCCCCC
Confidence 67776554
No 96
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.49 E-value=1.5e-06 Score=91.79 Aligned_cols=130 Identities=19% Similarity=0.277 Sum_probs=90.6
Q ss_pred ceEEEEecChHHHHHHHHHhhCC--CEEEEECCCCCC------CCcc--ccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFG--CNVLYNSRSKKP------VPYA--FYSNVCELAANSDALIICCALTDQTRRMINR 231 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~~~~~------~~~~--~~~~l~ell~~aDiV~l~~P~t~~t~~li~~ 231 (331)
++|+|||+|.||+++++.++..| .+|++++++... .+.. ...++.+++.++|+|++|+|.. .+..++ +
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~ 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence 68999999999999999999888 489999988654 1221 2346788899999999999954 455554 3
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCC----------CCCccccCCceEEcCCCCC
Q 020073 232 EVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPY----------VPKELLELDNVVLQPHRAV 298 (331)
Q Consensus 232 ~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~----------~~~~L~~~~nvilTPH~a~ 298 (331)
+....++++.++++++..+-.-.+++.+.+....+ .+..+-|. ...+|+.-.+++++|+..+
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~-----r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~ 153 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPA-----GFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET 153 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCC-----eEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence 34455788999999998664444555555543222 22223332 1125888889999997654
No 97
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.48 E-value=1e-06 Score=83.55 Aligned_cols=98 Identities=12% Similarity=0.176 Sum_probs=69.5
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----C------C--------------ccccCCHHhhhcCCCEEE
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----V------P--------------YAFYSNVCELAANSDALI 216 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~------~--------------~~~~~~l~ell~~aDiV~ 216 (331)
++|+|||+|.||..+|..+...|++|++++++... . + .....++.+++++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 57999999999999999999999999999986543 0 0 012346778899999999
Q ss_pred EeccCChh-hhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 020073 217 ICCALTDQ-TRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLV 262 (331)
Q Consensus 217 l~~P~t~~-t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~ 262 (331)
+|+|...+ ...++ ++.-..++++++++....| +....+.+.+.
T Consensus 85 ~av~~~~~~~~~v~-~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~ 128 (311)
T PRK06130 85 EAVPEKLELKRDVF-ARLDGLCDPDTIFATNTSG--LPITAIAQAVT 128 (311)
T ss_pred EeccCcHHHHHHHH-HHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence 99997754 33444 3333345777776544444 33557777764
No 98
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.44 E-value=1.9e-07 Score=77.22 Aligned_cols=103 Identities=21% Similarity=0.335 Sum_probs=61.3
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCCEEEE-ECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLY-NSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMINR 231 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~-~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~ 231 (331)
...+|+|||.|++|+.+++.|...|+.|.. ++|+... .+.....++++++.++|++++++|.+ ....+. +
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va-~ 86 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEVA-E 86 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHHH-H
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHHH-H
Confidence 346899999999999999999999999875 5676533 23334567889999999999999966 444433 3
Q ss_pred HHHhc--CCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 020073 232 EVMLA--LGKEGIIVNVGRGAVIDENEMVRCLVRGEI 266 (331)
Q Consensus 232 ~~l~~--mk~ga~lIn~srg~~vd~~al~~aL~~~~i 266 (331)
+.-.. .++|.+++-+| |. ..-+-|..+-+.|-+
T Consensus 87 ~La~~~~~~~g~iVvHtS-Ga-~~~~vL~p~~~~Ga~ 121 (127)
T PF10727_consen 87 QLAQYGAWRPGQIVVHTS-GA-LGSDVLAPARERGAI 121 (127)
T ss_dssp HHHCC--S-TT-EEEES--SS---GGGGHHHHHTT-E
T ss_pred HHHHhccCCCCcEEEECC-CC-ChHHhhhhHHHCCCe
Confidence 33333 68999999985 33 334444444444443
No 99
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.44 E-value=4.6e-07 Score=77.63 Aligned_cols=86 Identities=22% Similarity=0.344 Sum_probs=63.6
Q ss_pred eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--------------C------CccccCCHHhhhcCCCEEEEeccCC
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--------------V------PYAFYSNVCELAANSDALIICCALT 222 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--------------~------~~~~~~~l~ell~~aDiV~l~~P~t 222 (331)
+|+|+|.|++|.++|..|...|.+|..|.|..+. . ......+++++++++|+|++++|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 6899999999999999999999999999987532 0 1123468999999999999999954
Q ss_pred hhhhhhccHHHHhcCCCCcEEEEcCCCC
Q 020073 223 DQTRRMINREVMLALGKEGIIVNVGRGA 250 (331)
Q Consensus 223 ~~t~~li~~~~l~~mk~ga~lIn~srg~ 250 (331)
..+.++ ++....++++..+|++..|=
T Consensus 81 -~~~~~~-~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 81 -AHREVL-EQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -GHHHHH-HHHTTTSHTT-EEEETS-SE
T ss_pred -HHHHHH-HHHhhccCCCCEEEEecCCc
Confidence 345444 45556678999999998764
No 100
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.43 E-value=3.2e-06 Score=84.98 Aligned_cols=176 Identities=19% Similarity=0.182 Sum_probs=106.5
Q ss_pred CeeEEEEeCCCCCCHHHHhcCC-CceEEEEccCCCCCCChhHHhhCCcEEEeCCCCC--h--------HHHHHHHHHHHH
Q 020073 61 SIEAILCSGDSPVTLDILRLLP-KLRLVVTASAGVNHIHMPECRRRGIAVANAGSIF--S--------DDAADAAVGLLI 129 (331)
Q Consensus 61 ~~d~ii~~~~~~i~~~~l~~~p-~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~--~--------~~vAE~al~l~L 129 (331)
++|+|+.-. +.+.+-++.++ +--+|+...-..|.=-++.+.+++|.+..--... + .++|+.+
T Consensus 64 ~adiIlkV~--~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iA----- 136 (511)
T TIGR00561 64 QSDIILKVN--APSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIA----- 136 (511)
T ss_pred cCCEEEEeC--CCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHH-----
Confidence 467776422 23444466654 5556666555555445677888998887622111 1 1333322
Q ss_pred HHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccc--
Q 020073 130 DVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAF-- 201 (331)
Q Consensus 130 ~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~-- 201 (331)
-.|-+....+.. |++..-..-..| .+.+.++.|+|+|.+|...++.++.+|++|.+++++... .+...
T Consensus 137 -Gy~Avi~Aa~~l--gr~~~g~~taag-~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~ 212 (511)
T TIGR00561 137 -GYRAIIEAAHEF--GRFFTGQITAAG-KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLE 212 (511)
T ss_pred -HHHHHHHHHHHh--hhhcCCceecCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEe
Confidence 222222221111 111110001122 456789999999999999999999999999999877543 11110
Q ss_pred c---------------C----------CHHhhhcCCCEEEEec--cCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 020073 202 Y---------------S----------NVCELAANSDALIICC--ALTDQTRRMINREVMLALGKEGIIVNVGR 248 (331)
Q Consensus 202 ~---------------~----------~l~ell~~aDiV~l~~--P~t~~t~~li~~~~l~~mk~ga~lIn~sr 248 (331)
. . -+.+.++++|+|+.++ |..+ ...++.++.++.||+|+++||+|-
T Consensus 213 v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 213 LDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred ccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence 0 0 0456678999999887 3322 235899999999999999999974
No 101
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.43 E-value=4.8e-07 Score=83.93 Aligned_cols=90 Identities=19% Similarity=0.297 Sum_probs=75.1
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHH
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINRE 232 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~ 232 (331)
.+.||.+.|.|+|.+|+.-|+.|++||.+|++....+-. .......+++|+.++.||++.+. ..+.+|..+
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtT----Gc~dii~~~ 286 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTT----GCKDIITGE 286 (434)
T ss_pred eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEcc----CCcchhhHH
Confidence 378999999999999999999999999999998765533 12223568999999999998764 356789999
Q ss_pred HHhcCCCCcEEEEcCCCCc
Q 020073 233 VMLALGKEGIIVNVGRGAV 251 (331)
Q Consensus 233 ~l~~mk~ga~lIn~srg~~ 251 (331)
+|.+||.++++.|++.-.+
T Consensus 287 H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 287 HFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred HHHhCcCCcEEeccccccc
Confidence 9999999999999986553
No 102
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.42 E-value=5.9e-07 Score=85.28 Aligned_cols=89 Identities=18% Similarity=0.277 Sum_probs=69.4
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------C--------------CccccCCHHhhhcCCCEEEEeccC
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------V--------------PYAFYSNVCELAANSDALIICCAL 221 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~--------------~~~~~~~l~ell~~aDiV~l~~P~ 221 (331)
++|+|||+|.||..+|..|...|.+|.+|+|++.. . +.....+++++++.+|+|++|+|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 47999999999999999999999999999987532 1 122245778889999999999996
Q ss_pred ChhhhhhccHHHHhcCCCCcEEEEcCCCCcc
Q 020073 222 TDQTRRMINREVMLALGKEGIIVNVGRGAVI 252 (331)
Q Consensus 222 t~~t~~li~~~~l~~mk~ga~lIn~srg~~v 252 (331)
..+..++ .+....+++++++|+++.|--.
T Consensus 82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 82 -QALREVL-KQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred -HHHHHHH-HHHHhhcCCCCEEEEEeecccC
Confidence 4666666 3455567889999999766443
No 103
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.41 E-value=1e-06 Score=82.24 Aligned_cols=129 Identities=19% Similarity=0.221 Sum_probs=91.0
Q ss_pred CccCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073 156 GSKLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 156 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
+.++.||+++|||. |.+|+.+|..|...|+.|+++... ..++.+..++||+|+++++.. +++....
T Consensus 153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------t~~l~~~~~~ADIVI~avg~~----~~v~~~~- 219 (284)
T PRK14179 153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------TRNLAEVARKADILVVAIGRG----HFVTKEF- 219 (284)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------CCCHHHHHhhCCEEEEecCcc----ccCCHHH-
Confidence 44799999999999 999999999999999999998321 237899999999999999854 3566654
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN 314 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n 314 (331)
+|+|+++||+|--.+. +|++ .-||-..+- .+ ---.+||=-||.-.-+..-+.+.+++-
T Consensus 220 --ik~GavVIDvgin~~~----------~gkl---~GDVdf~~v------~~-~a~~iTPVPGGVGp~T~a~L~~N~~~a 277 (284)
T PRK14179 220 --VKEGAVVIDVGMNRDE----------NGKL---IGDVDFDEV------AE-VASYITPVPGGVGPMTITMLMEQTYQA 277 (284)
T ss_pred --ccCCcEEEEecceecC----------CCCe---ecCccHHHH------Hh-hccEecCCCCCchHHHHHHHHHHHHHH
Confidence 7999999999854422 3554 345532211 11 123589987777665555555555554
Q ss_pred HHHHH
Q 020073 315 LEALF 319 (331)
Q Consensus 315 l~~~~ 319 (331)
.++++
T Consensus 278 ~~~~~ 282 (284)
T PRK14179 278 ALRSL 282 (284)
T ss_pred HHHHh
Confidence 44443
No 104
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.38 E-value=3.6e-06 Score=82.49 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=83.7
Q ss_pred eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----C----------------C-ccc--cCCHHhhhcCCCEEEEe
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----V----------------P-YAF--YSNVCELAANSDALIIC 218 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~----------------~-~~~--~~~l~ell~~aDiV~l~ 218 (331)
+|+|||+|.||..+|..+.. |++|+++|++... . . ... ..+..++.++||+|++|
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~ 80 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIA 80 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEe
Confidence 69999999999999977764 9999999987654 1 0 011 12356778999999999
Q ss_pred ccCCh----------hhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCC----cc
Q 020073 219 CALTD----------QTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPK----EL 284 (331)
Q Consensus 219 ~P~t~----------~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~----~L 284 (331)
+|..- ..+..+ ++.. .+++|.++|+.|.-.+=..+.+.+.+.+..+ +|.+|...+. ++
T Consensus 81 Vpt~~~~k~~~~dl~~v~~v~-~~i~-~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v------~~~PE~l~~G~a~~d~ 152 (388)
T PRK15057 81 TPTDYDPKTNYFNTSSVESVI-KDVV-EINPYAVMVIKSTVPVGFTAAMHKKYRTENI------IFSPEFLREGKALYDN 152 (388)
T ss_pred CCCCCccCCCCcChHHHHHHH-HHHH-hcCCCCEEEEeeecCCchHHHHHHHhhcCcE------EECcccccCCcccccc
Confidence 99651 112222 2333 3799999999999888788888887765433 2366654332 45
Q ss_pred ccCCceEE
Q 020073 285 LELDNVVL 292 (331)
Q Consensus 285 ~~~~nvil 292 (331)
...|.|++
T Consensus 153 ~~p~rvv~ 160 (388)
T PRK15057 153 LHPSRIVI 160 (388)
T ss_pred cCCCEEEE
Confidence 66667654
No 105
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.38 E-value=1.4e-06 Score=81.44 Aligned_cols=122 Identities=16% Similarity=0.235 Sum_probs=86.9
Q ss_pred ccCCCceEEEEecCh-HHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073 157 SKLGGKRVGIVGLGN-IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVML 235 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~ 235 (331)
.++.|+++.|||.|. +|+.+|..|...|++|+++.+.. .++.+.+++||+|+++++. .++|.++.
T Consensus 154 i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------~~l~~~~~~ADIVIsAvg~----p~~i~~~~-- 219 (286)
T PRK14175 154 IDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------KDMASYLKDADVIVSAVGK----PGLVTKDV-- 219 (286)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------hhHHHHHhhCCEEEECCCC----CcccCHHH--
Confidence 469999999999998 99999999999999998876532 4689999999999999874 34787765
Q ss_pred cCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHH
Q 020073 236 ALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVG 313 (331)
Q Consensus 236 ~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~ 313 (331)
+|+|+++||+|--.. .+|++ .-||-..+ ..+. --.+||=-||.-.-+...+.+.+++
T Consensus 220 -vk~gavVIDvGi~~~----------~~gkl---~GDvd~~~------~~~~-a~~iTPVPGGVGp~T~a~L~~n~~~ 276 (286)
T PRK14175 220 -VKEGAVIIDVGNTPD----------ENGKL---KGDVDYDA------VKEI-AGAITPVPGGVGPLTITMVLNNTLL 276 (286)
T ss_pred -cCCCcEEEEcCCCcC----------CCCCe---ecCccHHH------HHhh-ccCcCCCCCCCHHHHHHHHHHHHHH
Confidence 699999999996441 13444 34552111 1111 1358898777666554444444443
No 106
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.37 E-value=2e-06 Score=86.92 Aligned_cols=112 Identities=18% Similarity=0.245 Sum_probs=82.2
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCC-----------------C-------------ccccCCHHhhhcC
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV-----------------P-------------YAFYSNVCELAAN 211 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----------------~-------------~~~~~~l~ell~~ 211 (331)
++|||||+|.||..+|..+...|++|++||++++.. + .....++++ +++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 579999999999999999999999999999886430 1 012346654 579
Q ss_pred CCEEEEeccCChhhhhhccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHhCCceEEEeecCCCCC
Q 020073 212 SDALIICCALTDQTRRMINREVMLALGKEGIIV-NVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEP 278 (331)
Q Consensus 212 aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lI-n~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP 278 (331)
||+|+.|+|.+.+.+.-+-.+.-..++++++|. |+|.-.+ ..+.+++.. ..+..++..|.+-|
T Consensus 85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Pap 148 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAP 148 (503)
T ss_pred CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCccc
Confidence 999999999988888776555555678888776 6665443 466676643 33456777777555
No 107
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.36 E-value=2.4e-07 Score=83.32 Aligned_cols=126 Identities=13% Similarity=0.156 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHH--hhCCCEEEE-ECCCC
Q 020073 118 DDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRL--QAFGCNVLY-NSRSK 194 (331)
Q Consensus 118 ~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l--~~~G~~V~~-~~~~~ 194 (331)
.+.++|.+..++...|++. .|. ..++++|||+|.+|+.+++.+ ...|+++++ +|+.+
T Consensus 61 ~~~~gy~v~~l~~~~~~~l---------~~~-----------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~ 120 (213)
T PRK05472 61 KRGVGYNVEELLEFIEKIL---------GLD-----------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDP 120 (213)
T ss_pred CCCCCeeHHHHHHHHHHHh---------CCC-----------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECCh
Confidence 3445688888888777754 111 235799999999999999863 357888774 56544
Q ss_pred CCC-----C--ccccCCHHhhhcC--CCEEEEeccCChh---hhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 020073 195 KPV-----P--YAFYSNVCELAAN--SDALIICCALTDQ---TRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLV 262 (331)
Q Consensus 195 ~~~-----~--~~~~~~l~ell~~--aDiV~l~~P~t~~---t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~ 262 (331)
... + .....++.+++++ .|+|++|+|.+.. ...+.......-+...++.+|+.+|.+|+..+|..+|.
T Consensus 121 ~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~ 200 (213)
T PRK05472 121 EKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQ 200 (213)
T ss_pred hhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHH
Confidence 331 1 1223467787755 9999999998764 22233333334456678899999999999999999986
Q ss_pred h
Q 020073 263 R 263 (331)
Q Consensus 263 ~ 263 (331)
.
T Consensus 201 ~ 201 (213)
T PRK05472 201 T 201 (213)
T ss_pred H
Confidence 4
No 108
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.34 E-value=1.9e-06 Score=87.28 Aligned_cols=112 Identities=16% Similarity=0.237 Sum_probs=82.9
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--C---------------C-------------ccccCCHHhhhcC
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--V---------------P-------------YAFYSNVCELAAN 211 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--~---------------~-------------~~~~~~l~ell~~ 211 (331)
++|||||+|.||..+|..+...|++|+++|++++. . + .....++++ +++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 67999999999999999999999999999988653 0 1 122346655 569
Q ss_pred CCEEEEeccCChhhhhhccHHHHhcCCCCcEE-EEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCC
Q 020073 212 SDALIICCALTDQTRRMINREVMLALGKEGII-VNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEP 278 (331)
Q Consensus 212 aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~l-In~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP 278 (331)
||+|+.++|.+.+.+..+-.+.-..+++++++ +|+|.-.+ .++.+++... =+..++..|.+-|
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~p-~r~~G~hff~Pa~ 150 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKHP-ERVAGLHFFNPVP 150 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCc-ccEEEEeecCCcc
Confidence 99999999999998887755544556899998 58887665 3566665432 2235677776544
No 109
>PRK07680 late competence protein ComER; Validated
Probab=98.34 E-value=2.1e-06 Score=80.01 Aligned_cols=96 Identities=17% Similarity=0.314 Sum_probs=72.4
Q ss_pred eEEEEecChHHHHHHHHHhhCCC----EEEEECCCCCC-------C-CccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFGC----NVLYNSRSKKP-------V-PYAFYSNVCELAANSDALIICCALTDQTRRMIN 230 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G~----~V~~~~~~~~~-------~-~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~ 230 (331)
+|+|||+|.||+.+++.|...|. +|.+++|+.+. . +.....+..+++.++|+|++++| ......++
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl- 79 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL- 79 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH-
Confidence 69999999999999999988773 78999997643 1 23334578888999999999997 33455555
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 020073 231 REVMLALGKEGIIVNVGRGAVIDENEMVRCLV 262 (331)
Q Consensus 231 ~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~ 262 (331)
++....++++.++|+++-| +..+.|.+.+.
T Consensus 80 ~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 80 QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 3344567788999999854 36777776654
No 110
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.33 E-value=1.7e-06 Score=79.96 Aligned_cols=96 Identities=11% Similarity=0.247 Sum_probs=72.2
Q ss_pred eEEEEecChHHHHHHHHHhhCCCE---EEEECCCCCC-------C-CccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFGCN---VLYNSRSKKP-------V-PYAFYSNVCELAANSDALIICCALTDQTRRMINR 231 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G~~---V~~~~~~~~~-------~-~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~ 231 (331)
+|||||+|+||+.+++.+...|.. |.+++|+.+. . +.....+..++++++|+|++|+| ......++..
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~~ 80 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLRA 80 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence 699999999999999999877753 5788887653 1 23345678889999999999999 4455555532
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073 232 EVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG 264 (331)
Q Consensus 232 ~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~ 264 (331)
+ .++++.++|.++ .-+..+.|.+.+..+
T Consensus 81 --l-~~~~~~~vis~~--ag~~~~~l~~~~~~~ 108 (258)
T PRK06476 81 --L-RFRPGQTVISVI--AATDRAALLEWIGHD 108 (258)
T ss_pred --h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence 3 257889999987 337888888887653
No 111
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.32 E-value=3.5e-06 Score=78.81 Aligned_cols=98 Identities=16% Similarity=0.325 Sum_probs=71.9
Q ss_pred ceEEEEecChHHHHHHHHHhhCC----CEEEEECCCCCC--------C-CccccCCHHhhhcCCCEEEEeccCChhhhhh
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFG----CNVLYNSRSKKP--------V-PYAFYSNVCELAANSDALIICCALTDQTRRM 228 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G----~~V~~~~~~~~~--------~-~~~~~~~l~ell~~aDiV~l~~P~t~~t~~l 228 (331)
.+|+|||+|.||+++++.+...| .+|.+++++... . ......+..+++.++|+|++|+|. .....+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp-~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPP-LAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCH-HHHHHH
Confidence 47999999999999999998877 688888875422 1 112245778889999999999983 344444
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 020073 229 INREVMLALGKEGIIVNVGRGAVIDENEMVRCLVR 263 (331)
Q Consensus 229 i~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~ 263 (331)
+ .+....++++..+|.+.-| +..+.|.+.+..
T Consensus 81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~ 112 (277)
T PRK06928 81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITPG 112 (277)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence 4 3333456778899998877 666788887743
No 112
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.30 E-value=2.3e-06 Score=85.45 Aligned_cols=106 Identities=18% Similarity=0.218 Sum_probs=90.1
Q ss_pred HHHHHHHHHhhCCCEEEEECCCCCC-----C------CccccCCHHhhhcC---CCEEEEeccCChhhhhhccHHHHhcC
Q 020073 172 IGLQVAKRLQAFGCNVLYNSRSKKP-----V------PYAFYSNVCELAAN---SDALIICCALTDQTRRMINREVMLAL 237 (331)
Q Consensus 172 IG~~~A~~l~~~G~~V~~~~~~~~~-----~------~~~~~~~l~ell~~---aDiV~l~~P~t~~t~~li~~~~l~~m 237 (331)
||+.+|++|...|++|.+|||++.+ . +.....++.++++. +|+|++|+|..+.++.++ ...++.+
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 7999999999999999999999765 1 13446789988774 899999999999999998 5688899
Q ss_pred CCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCC
Q 020073 238 GKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEP 278 (331)
Q Consensus 238 k~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP 278 (331)
.+|.++||++....-|...+.+.+++..+.....=|...++
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~ 120 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE 120 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence 99999999999999999999999999988765555666544
No 113
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.30 E-value=2.9e-06 Score=75.47 Aligned_cols=85 Identities=25% Similarity=0.311 Sum_probs=63.9
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC---------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHH
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP---------VPYAFYSNVCELAANSDALIICCALTDQTRRMINRE 232 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~---------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~ 232 (331)
++++|+|.|+||..+|+++...|.+|.+-++...+ .....-.+.+++.+.+|+|++++|...- ... .++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~-~~v-~~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAI-PDV-LAE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHH-HhH-HHH
Confidence 68999999999999999999999999887655433 1112235788999999999999997633 332 355
Q ss_pred HHhcCCCCcEEEEcCCC
Q 020073 233 VMLALGKEGIIVNVGRG 249 (331)
Q Consensus 233 ~l~~mk~ga~lIn~srg 249 (331)
....+. |.++|++.-.
T Consensus 80 l~~~~~-~KIvID~tnp 95 (211)
T COG2085 80 LRDALG-GKIVIDATNP 95 (211)
T ss_pred HHHHhC-CeEEEecCCC
Confidence 555555 8899988653
No 114
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=98.27 E-value=1.1e-05 Score=67.97 Aligned_cols=80 Identities=20% Similarity=0.293 Sum_probs=67.5
Q ss_pred CccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073 156 GSKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 156 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
+.++.||++.|+| -+.+|+.+|..|...|++|..+++.. .++++.+++||+|+.+++.. ++|+.+.
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------~~l~~~v~~ADIVvsAtg~~----~~i~~~~- 89 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------IQLQSKVHDADVVVVGSPKP----EKVPTEW- 89 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------cCHHHHHhhCCEEEEecCCC----CccCHHH-
Confidence 4579999999999 56789999999999999999887532 37899999999999998644 5788877
Q ss_pred hcCCCCcEEEEcCCCC
Q 020073 235 LALGKEGIIVNVGRGA 250 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~ 250 (331)
+|+|+++||++...
T Consensus 90 --ikpGa~Vidvg~~~ 103 (140)
T cd05212 90 --IKPGATVINCSPTK 103 (140)
T ss_pred --cCCCCEEEEcCCCc
Confidence 69999999998655
No 115
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.26 E-value=8.6e-07 Score=76.78 Aligned_cols=90 Identities=20% Similarity=0.331 Sum_probs=67.0
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------------CC-------------------ccccCCH
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------------VP-------------------YAFYSNV 205 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------------~~-------------------~~~~~~l 205 (331)
.+...++.|+|.|..|+..++.++++|++|..++..... .. ..+...+
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 96 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF 96 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH
Confidence 467789999999999999999999999999998876432 00 1111357
Q ss_pred HhhhcCCCEEEEec-cCChhhhhhccHHHHhcCCCCcEEEEcC
Q 020073 206 CELAANSDALIICC-ALTDQTRRMINREVMLALGKEGIIVNVG 247 (331)
Q Consensus 206 ~ell~~aDiV~l~~-P~t~~t~~li~~~~l~~mk~ga~lIn~s 247 (331)
.+.++.+|+|+.++ -..+..-.++.++.++.||+|++++++|
T Consensus 97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 78899999998654 3466777899999999999999999997
No 116
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.26 E-value=1.6e-05 Score=75.11 Aligned_cols=87 Identities=14% Similarity=0.188 Sum_probs=72.5
Q ss_pred HHHHHHHHhhCCCEEEEECCCCCC-----------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCc
Q 020073 173 GLQVAKRLQAFGCNVLYNSRSKKP-----------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEG 241 (331)
Q Consensus 173 G~~~A~~l~~~G~~V~~~~~~~~~-----------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga 241 (331)
|+.+|++|...|++|++||+++.. .+.....+..++++++|+|++|+|..+.++.++ ...++.+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 889999999999999999887542 244456689999999999999999988888887 56888999999
Q ss_pred EEEEcCCCCccCHHHHHHHHHh
Q 020073 242 IIVNVGRGAVIDENEMVRCLVR 263 (331)
Q Consensus 242 ~lIn~srg~~vd~~al~~aL~~ 263 (331)
++||+|. ++.+.++..|+.
T Consensus 111 IVID~ST---IsP~t~~~~~e~ 129 (341)
T TIGR01724 111 VICNTCT---VSPVVLYYSLEK 129 (341)
T ss_pred EEEECCC---CCHHHHHHHHHH
Confidence 9999964 666777777766
No 117
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.24 E-value=8.5e-06 Score=62.59 Aligned_cols=67 Identities=24% Similarity=0.401 Sum_probs=55.7
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhC-CCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAF-GCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVML 235 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~-G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~ 235 (331)
..+.+++++|+|.|.+|+.+++.+... +.+|.+++| |+++.+.+.. +.+.++...
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------di~i~~~~~~----~~~~~~~~~ 74 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------DILVTATPAG----VPVLEEATA 74 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------CEEEEcCCCC----CCchHHHHH
Confidence 357889999999999999999999988 568888876 9999987643 455555688
Q ss_pred cCCCCcEEEEcC
Q 020073 236 ALGKEGIIVNVG 247 (331)
Q Consensus 236 ~mk~ga~lIn~s 247 (331)
.+++++++++++
T Consensus 75 ~~~~~~~v~~~a 86 (86)
T cd05191 75 KINEGAVVIDLA 86 (86)
T ss_pred hcCCCCEEEecC
Confidence 899999999874
No 118
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.22 E-value=1.3e-05 Score=75.58 Aligned_cols=135 Identities=18% Similarity=0.235 Sum_probs=96.4
Q ss_pred CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhh-cCCCEEEEeccCChhhhhhccHHHH
Q 020073 161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELA-ANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell-~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
-.+|||||+|.+|+-.|+.+...|..+..++|+.-. .+...++.+.+++ +++|+|++|+.. ..+..++..=-+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilatypf 130 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILATYPF 130 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHhcCc
Confidence 468999999999999999999999999999997633 3455567788776 559999999753 245555544456
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCC
Q 020073 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRA 297 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a 297 (331)
+++|.|++++++-.-+...-+++.+.|-+.--.=+.=-.|.++- ..+.+..+|=|+.-=.+|
T Consensus 131 qrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPks-vnh~wqglpfVydkvRig 192 (480)
T KOG2380|consen 131 QRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKS-VNHEWQGLPFVYDKVRIG 192 (480)
T ss_pred hhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCc-CCCccccCceEEEEeecc
Confidence 77899999999999998888888888866321111122233331 234566778776665454
No 119
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=98.22 E-value=6e-06 Score=70.97 Aligned_cols=122 Identities=21% Similarity=0.253 Sum_probs=75.1
Q ss_pred CccCCCceEEEEecCh-HHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073 156 GSKLGGKRVGIVGLGN-IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 156 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
+.++.||++.|||-+. +|+.++..|...|+.|..+... ..++++.+++||+|+.++.- .++|..+.
T Consensus 31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~--------T~~l~~~~~~ADIVVsa~G~----~~~i~~~~- 97 (160)
T PF02882_consen 31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSK--------TKNLQEITRRADIVVSAVGK----PNLIKADW- 97 (160)
T ss_dssp T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TT--------SSSHHHHHTTSSEEEE-SSS----TT-B-GGG-
T ss_pred CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCC--------CCcccceeeeccEEeeeecc----cccccccc-
Confidence 3469999999999885 9999999999999999887653 25799999999999999863 45776654
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHH
Q 020073 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELA 311 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~ 311 (331)
+|+|+++||++.-.. -.++++ .-||.. +...+ .--.+||=-||.-.-+..-+.+.+
T Consensus 98 --ik~gavVIDvG~~~~---------~~~~~~---~GDv~~------~~~~~-~a~~itPvPgGVGplT~a~L~~N~ 153 (160)
T PF02882_consen 98 --IKPGAVVIDVGINYV---------PGDGKL---VGDVDF------ESVKE-KASAITPVPGGVGPLTVAMLMKNL 153 (160)
T ss_dssp --S-TTEEEEE--CEEE---------TTTTEE---EESB-H------HHHHT-TCSEEE-SSSSCHHHHHHHHHHHH
T ss_pred --ccCCcEEEecCCccc---------ccccee---eecccH------HHhhc-cceEEeeCCCCccHHHHHHHHHHH
Confidence 699999999986654 122333 345521 11222 233578877776654444433333
No 120
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.21 E-value=2e-06 Score=85.04 Aligned_cols=90 Identities=21% Similarity=0.310 Sum_probs=69.2
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCC-CEEEEECCCCCC-------CCc--cccCCHHhhhcCCCEEEEeccCChhhhh
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFG-CNVLYNSRSKKP-------VPY--AFYSNVCELAANSDALIICCALTDQTRR 227 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~-------~~~--~~~~~l~ell~~aDiV~l~~P~t~~t~~ 227 (331)
.+.|++++|+|+|.||+.+++.|+..| .+|++++|+... .+. ....++.+++.++|+|+.|++ .+..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~---s~~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTG---APHP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCC---CCCc
Confidence 478999999999999999999999999 689999998654 111 122467788899999999965 4456
Q ss_pred hccHHHHhcCC----CCcEEEEcCCCC
Q 020073 228 MINREVMLALG----KEGIIVNVGRGA 250 (331)
Q Consensus 228 li~~~~l~~mk----~ga~lIn~srg~ 250 (331)
+++++.++.+. .+.++||.+...
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~Pr 280 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAVPR 280 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 78888887652 235888887543
No 121
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.18 E-value=1.2e-05 Score=75.28 Aligned_cols=127 Identities=22% Similarity=0.252 Sum_probs=87.6
Q ss_pred CccCCCceEEEEecCh-HHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073 156 GSKLGGKRVGIVGLGN-IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 156 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
+.++.||++.|||.|. +|+.+|..|...|+.|+++.+. ..+|.+.+++||+|+.+++-. +++..+.
T Consensus 154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~--------T~~l~~~~~~ADIvi~avG~p----~~v~~~~- 220 (285)
T PRK10792 154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF--------TKNLRHHVRNADLLVVAVGKP----GFIPGEW- 220 (285)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC--------CCCHHHHHhhCCEEEEcCCCc----ccccHHH-
Confidence 3478999999999999 9999999999999999887643 247999999999999998522 3676654
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN 314 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n 314 (331)
+|+|+++||+|--.+- +|++. -||-.. ...+. --.+||=-||...-+...+.+.+++-
T Consensus 221 --vk~gavVIDvGin~~~----------~gk~~---GDvd~~------~~~~~-a~~itPvPGGVGp~T~a~L~~N~~~a 278 (285)
T PRK10792 221 --IKPGAIVIDVGINRLE----------DGKLV---GDVEFE------TAAER-ASWITPVPGGVGPMTVATLLENTLQA 278 (285)
T ss_pred --cCCCcEEEEccccccc----------CCCcC---CCcCHH------HHHhh-ccCcCCCCCCChHHHHHHHHHHHHHH
Confidence 6999999999943321 23332 343110 01111 23588887887766555555555544
Q ss_pred HHH
Q 020073 315 LEA 317 (331)
Q Consensus 315 l~~ 317 (331)
.++
T Consensus 279 ~~~ 281 (285)
T PRK10792 279 CEE 281 (285)
T ss_pred HHH
Confidence 333
No 122
>PLN00203 glutamyl-tRNA reductase
Probab=98.16 E-value=2.9e-06 Score=85.81 Aligned_cols=89 Identities=20% Similarity=0.320 Sum_probs=68.9
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-------C-Cc----cccCCHHhhhcCCCEEEEeccCChh
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-------V-PY----AFYSNVCELAANSDALIICCALTDQ 224 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------~-~~----~~~~~l~ell~~aDiV~l~~P~t~~ 224 (331)
++.+++|+|||.|.||+.+++.|...|+ +|++++|+... . +. ....++.+++.++|+|+.|+| .
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~---s 339 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS---S 339 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC---C
Confidence 4889999999999999999999999997 79999998654 1 11 123467788999999999865 4
Q ss_pred hhhhccHHHHhcCCCC-------cEEEEcCCC
Q 020073 225 TRRMINREVMLALGKE-------GIIVNVGRG 249 (331)
Q Consensus 225 t~~li~~~~l~~mk~g-------a~lIn~srg 249 (331)
...+|.++.++.++++ .++||.+=.
T Consensus 340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvP 371 (519)
T PLN00203 340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVP 371 (519)
T ss_pred CCCeeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence 5668889998887432 377777644
No 123
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.16 E-value=3.5e-05 Score=71.34 Aligned_cols=95 Identities=18% Similarity=0.295 Sum_probs=67.9
Q ss_pred ceEEEEecChHHHHHHHHHhhCC---CEEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFG---CNVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMINR 231 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G---~~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~ 231 (331)
++|+|||+|.||+.+++.+...| .+|.+++|+.+. .+.....+..+++.++|+|++|+|.. ....++..
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~~~ 81 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVLSE 81 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHHHH
Confidence 57999999999999999998888 689999998643 12333457788889999999999843 34444422
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 020073 232 EVMLALGKEGIIVNVGRGAVIDENEMVRCLV 262 (331)
Q Consensus 232 ~~l~~mk~ga~lIn~srg~~vd~~al~~aL~ 262 (331)
....+ +.++|++.-|- ..+.+.+.+.
T Consensus 82 -l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 82 -LKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred -HHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 22223 46778876653 5666776665
No 124
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.15 E-value=5.3e-06 Score=77.18 Aligned_cols=90 Identities=26% Similarity=0.346 Sum_probs=70.0
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN 230 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~ 230 (331)
-|.||+|+|||+|+-|++-|..|+..|.+|++--|.... .++ ...+.+|+.++||+|.+.+|...+ ..+..
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf-~V~~v~ea~k~ADvim~L~PDe~q-~~vy~ 92 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGF-KVYTVEEAAKRADVVMILLPDEQQ-KEVYE 92 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCC-EeecHHHHhhcCCEEEEeCchhhH-HHHHH
Confidence 489999999999999999999999999998776554433 233 345899999999999999996544 34566
Q ss_pred HHHHhcCCCCcEEEEcCCCC
Q 020073 231 REVMLALGKEGIIVNVGRGA 250 (331)
Q Consensus 231 ~~~l~~mk~ga~lIn~srg~ 250 (331)
++.-..||.|+.| --|.|=
T Consensus 93 ~~I~p~Lk~G~aL-~FaHGf 111 (338)
T COG0059 93 KEIAPNLKEGAAL-GFAHGF 111 (338)
T ss_pred HHhhhhhcCCceE-Eecccc
Confidence 6777889999854 444543
No 125
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.14 E-value=5.3e-05 Score=72.93 Aligned_cols=158 Identities=15% Similarity=0.181 Sum_probs=122.6
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--------C---CccccCCHHh---hhcCCCEEEEeccCChhhhh
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--------V---PYAFYSNVCE---LAANSDALIICCALTDQTRR 227 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--------~---~~~~~~~l~e---ll~~aDiV~l~~P~t~~t~~ 227 (331)
..+|+||+|.||+.+|......|++|.+|+|+..+ . ....+.+++| .++...-|++++-.......
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 46999999999999999999999999999999765 1 1223345555 46788889998865433355
Q ss_pred hccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHH
Q 020073 228 MINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDL 307 (331)
Q Consensus 228 li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~ 307 (331)
.| .+.+..|.+|-++|+-+-..--|...-.++|....|...+.-|...|--... -|-+ +-|.+.++++..
T Consensus 84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~----GPSi-----MpGG~~eay~~v 153 (473)
T COG0362 84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARH----GPSI-----MPGGQKEAYELV 153 (473)
T ss_pred HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccccccc----CCCc-----CCCCCHHHHHHH
Confidence 56 6678889999999999999999999999999999999999999988863211 1211 347788888887
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCC
Q 020073 308 CELAVGNLEALFSNQPLLSPVTA 330 (331)
Q Consensus 308 ~~~~~~nl~~~~~g~~~~~~v~~ 330 (331)
.-++ +.|.+-..|+|+..-|.|
T Consensus 154 ~pil-~~IaAk~~g~pCc~~iG~ 175 (473)
T COG0362 154 APIL-TKIAAKVDGEPCCTWIGP 175 (473)
T ss_pred HHHH-HHHHhhcCCCCceeeECC
Confidence 7764 456666679998777665
No 126
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=98.14 E-value=2.4e-06 Score=79.68 Aligned_cols=90 Identities=20% Similarity=0.252 Sum_probs=73.0
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC---C----Ccc------ccCCHHhhhcCCCEEEEeccC-Ch
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP---V----PYA------FYSNVCELAANSDALIICCAL-TD 223 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~---~----~~~------~~~~l~ell~~aDiV~l~~P~-t~ 223 (331)
.+...+|.|||.|-+|...|+.+.++|.+|...+.+.++ . +.+ ....+++.+.++|+|+-++=- ..
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 366678999999999999999999999999999988654 1 111 123588999999999988722 33
Q ss_pred hhhhhccHHHHhcCCCCcEEEEcC
Q 020073 224 QTRRMINREVMLALGKEGIIVNVG 247 (331)
Q Consensus 224 ~t~~li~~~~l~~mk~ga~lIn~s 247 (331)
..-.++.++++++||||+++|+++
T Consensus 245 kaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEEEE
Confidence 456688999999999999999997
No 127
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=98.14 E-value=1.2e-05 Score=74.58 Aligned_cols=123 Identities=23% Similarity=0.436 Sum_probs=77.6
Q ss_pred CceEEEEecChHHHHHHHHHhhCCC----EEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhc
Q 020073 161 GKRVGIVGLGNIGLQVAKRLQAFGC----NVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLA 236 (331)
Q Consensus 161 g~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~ 236 (331)
..+|+|||+|+||+++++.+...|. +|++++++....+.....+..+++.++|+|++|+| ...+..++. +....
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~-~i~~~ 80 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNTPFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLL-EIKPY 80 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcCCeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHH-HHHhh
Confidence 4689999999999999999987652 58888887654333344577788899999999987 445666653 23334
Q ss_pred CCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCC
Q 020073 237 LGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPH 295 (331)
Q Consensus 237 mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH 295 (331)
++++ .+|.+.-| +..+.+.+.+...+. ...+ -|..+ .+...-.++++|.
T Consensus 81 l~~~-~iIS~~aG--i~~~~l~~~~~~~~~---vvr~---mPn~p-~~~g~g~t~i~~~ 129 (260)
T PTZ00431 81 LGSK-LLISICGG--LNLKTLEEMVGVEAK---IVRV---MPNTP-SLVGQGSLVFCAN 129 (260)
T ss_pred ccCC-EEEEEeCC--ccHHHHHHHcCCCCe---EEEE---CCCch-hHhcceeEEEEeC
Confidence 5554 45655544 345666665543321 1111 22211 3555566777764
No 128
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.13 E-value=1.1e-05 Score=75.61 Aligned_cols=123 Identities=18% Similarity=0.186 Sum_probs=86.0
Q ss_pred CccCCCceEEEEecCh-HHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073 156 GSKLGGKRVGIVGLGN-IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 156 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
+.++.|+++.|||.|. +|+++|..|...|++|+++++. ..++.+.+++||+|+.+++ . .++++.+.
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~--------t~~L~~~~~~aDIvI~AtG-~---~~~v~~~~- 220 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR--------TQNLPELVKQADIIVGAVG-K---PELIKKDW- 220 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC--------chhHHHHhccCCEEEEccC-C---CCcCCHHH-
Confidence 3468999999999998 9999999999999999988762 2468888899999999996 2 23677765
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN 314 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n 314 (331)
+|+|++++|++-..+ ++++ .=||-. +...+ .--.+||=-||.-.-+...+.+.+++.
T Consensus 221 --lk~gavViDvg~n~~-----------~~~~---~GDvd~------~~~~~-~a~~itPvPGGVGp~T~a~L~~n~~~~ 277 (283)
T PRK14192 221 --IKQGAVVVDAGFHPR-----------DGGG---VGDIEL------QGIEE-IASAYTPVPGGVGPMTINTLIRQTVEA 277 (283)
T ss_pred --cCCCCEEEEEEEeec-----------CCCC---cccccH------HHhhc-cceEeCCCCCcChHHHHHHHHHHHHHH
Confidence 699999999985442 1222 224421 11111 134579988887665555554444443
No 129
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.13 E-value=7.8e-06 Score=76.20 Aligned_cols=80 Identities=19% Similarity=0.274 Sum_probs=67.9
Q ss_pred CccCCCceEEEEecC-hHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073 156 GSKLGGKRVGIVGLG-NIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 156 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
+.+++|+++.|+|.+ ..|+.+|..+..+|+.|..+.+. ..++.+.+++||+|+.+++.. +++.++++
T Consensus 147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~--------t~~L~~~~~~ADIvI~Avgk~----~lv~~~~v 214 (279)
T PRK14178 147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSK--------TENLKAELRQADILVSAAGKA----GFITPDMV 214 (279)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecC--------hhHHHHHHhhCCEEEECCCcc----cccCHHHc
Confidence 347999999999999 99999999999999999877643 247999999999999998632 68888884
Q ss_pred hcCCCCcEEEEcCCCC
Q 020073 235 LALGKEGIIVNVGRGA 250 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~ 250 (331)
|+|+++||+|-..
T Consensus 215 ---k~GavVIDVgi~~ 227 (279)
T PRK14178 215 ---KPGATVIDVGINQ 227 (279)
T ss_pred ---CCCcEEEEeeccc
Confidence 9999999999544
No 130
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.11 E-value=9.3e-06 Score=75.89 Aligned_cols=128 Identities=18% Similarity=0.204 Sum_probs=89.5
Q ss_pred CccCCCceEEEEecC-hHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073 156 GSKLGGKRVGIVGLG-NIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 156 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
+.++.||++.|||-| .+|+.+|..|...|+.|+++... ..+|.+.+++||+|+.+++ ..+++..+++
T Consensus 152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~--------t~~l~~~~~~ADIvV~AvG----~p~~i~~~~v 219 (285)
T PRK14191 152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL--------TKDLSFYTQNADIVCVGVG----KPDLIKASMV 219 (285)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC--------cHHHHHHHHhCCEEEEecC----CCCcCCHHHc
Confidence 347899999999999 99999999999999999887432 2358899999999999985 3457888775
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN 314 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n 314 (331)
|+|+++||+|-..+ .+|++. -||-..+ ..+. --.+||=-||.-.-+..-+.+.+++-
T Consensus 220 ---k~GavVIDvGi~~~----------~~gklv---GDvd~e~------v~~~-a~~iTPVPGGVGpvT~a~L~~N~~~a 276 (285)
T PRK14191 220 ---KKGAVVVDIGINRL----------NDGRLV---GDVDFEN------VAPK-ASFITPVPGGVGPMTIVSLLENTLIA 276 (285)
T ss_pred ---CCCcEEEEeecccc----------cCCcee---ccccHHH------Hhhh-ccEEecCCCCChHHHHHHHHHHHHHH
Confidence 99999999996543 135543 4552111 1111 12489987776655555555444444
Q ss_pred HHHH
Q 020073 315 LEAL 318 (331)
Q Consensus 315 l~~~ 318 (331)
.+++
T Consensus 277 ~~~~ 280 (285)
T PRK14191 277 AEKR 280 (285)
T ss_pred HHHH
Confidence 4443
No 131
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=98.10 E-value=2.2e-05 Score=69.20 Aligned_cols=87 Identities=21% Similarity=0.274 Sum_probs=66.1
Q ss_pred CCCccCCCceEEEEecC-hHHHHHHHHHhhCCCEEEEECCCCCC-------CCcccc--CC----HHhhhcCCCEEEEec
Q 020073 154 PLGSKLGGKRVGIVGLG-NIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYAFY--SN----VCELAANSDALIICC 219 (331)
Q Consensus 154 ~~~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~~--~~----l~ell~~aDiV~l~~ 219 (331)
+.+.++.||++.|||-+ .+|+.+|..|...|+.|+.++.+.-- ...... .+ +.+.+++||+|++++
T Consensus 55 ~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAv 134 (197)
T cd01079 55 PYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGV 134 (197)
T ss_pred ccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEcc
Confidence 44778999999999955 57999999999999999988632210 000001 13 789999999999998
Q ss_pred cCChhhhhh-ccHHHHhcCCCCcEEEEcC
Q 020073 220 ALTDQTRRM-INREVMLALGKEGIIVNVG 247 (331)
Q Consensus 220 P~t~~t~~l-i~~~~l~~mk~ga~lIn~s 247 (331)
+.. ++ +..+. .|+|+++||+|
T Consensus 135 G~~----~~~i~~d~---ik~GavVIDVG 156 (197)
T cd01079 135 PSP----NYKVPTEL---LKDGAICINFA 156 (197)
T ss_pred CCC----CCccCHHH---cCCCcEEEEcC
Confidence 733 45 77776 59999999998
No 132
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.10 E-value=8.3e-06 Score=77.58 Aligned_cols=89 Identities=25% Similarity=0.368 Sum_probs=62.8
Q ss_pred CCCceEEEEecChHHHHHHHHHhhCC-CEEEEECCCCCC-------CCcc--ccCCHHhhhcCCCEEEEeccCChhhhhh
Q 020073 159 LGGKRVGIVGLGNIGLQVAKRLQAFG-CNVLYNSRSKKP-------VPYA--FYSNVCELAANSDALIICCALTDQTRRM 228 (331)
Q Consensus 159 l~g~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~-------~~~~--~~~~l~ell~~aDiV~l~~P~t~~t~~l 228 (331)
+.|++|+|||.|.||+.+++.++..| .+|++++|+..+ .+.. ...++.+.+.++|+|+.++|.... ..+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence 68999999999999999999999876 478899998653 1211 123567788999999999985533 222
Q ss_pred ccHHHHhcC-CCCcEEEEcCCC
Q 020073 229 INREVMLAL-GKEGIIVNVGRG 249 (331)
Q Consensus 229 i~~~~l~~m-k~ga~lIn~srg 249 (331)
+ +..++.. +++.++||.+..
T Consensus 255 ~-~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 255 V-ERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred H-HHHHhhCCCCCeEEEEeCCC
Confidence 2 3333322 356778877753
No 133
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.08 E-value=1.5e-05 Score=74.45 Aligned_cols=121 Identities=17% Similarity=0.260 Sum_probs=84.7
Q ss_pred CccCCCceEEEEecCh-HHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073 156 GSKLGGKRVGIVGLGN-IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 156 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
+.++.|+++.|||.|. +|+.+|..|...|+.|+++... ..++.+..++||+|++++.- .++|..+.
T Consensus 159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~--------T~~l~~~~~~ADIvv~AvG~----p~~i~~~~- 225 (287)
T PRK14176 159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF--------TDDLKKYTLDADILVVATGV----KHLIKADM- 225 (287)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc--------CCCHHHHHhhCCEEEEccCC----ccccCHHH-
Confidence 3478999999999999 9999999999999999887642 24789999999999998742 24777764
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHH
Q 020073 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAV 312 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~ 312 (331)
+|+|+++||+|--.. +|++. -||-..+ ... .--.+||=-||.-.-+...+.+.++
T Consensus 226 --vk~gavVIDvGin~~-----------~gkl~---GDvd~~~------~~~-~a~~iTPVPGGVGp~T~a~L~~n~~ 280 (287)
T PRK14176 226 --VKEGAVIFDVGITKE-----------EDKVY---GDVDFEN------VIK-KASLITPVPGGVGPLTIAMLMKHVL 280 (287)
T ss_pred --cCCCcEEEEeccccc-----------CCCcc---CCcCHHH------HHh-hceEcCCCCCCChHHHHHHHHHHHH
Confidence 699999999985321 34442 3442111 111 1235888777776654444444433
No 134
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.08 E-value=3.4e-05 Score=77.83 Aligned_cols=177 Identities=19% Similarity=0.223 Sum_probs=104.6
Q ss_pred CeeEEEEeCCCCCCHHHHhcCC-CceEEEEccCCCCCCChhHHhhCCcEEEeCCCCC----------hHHHHHHHHHHHH
Q 020073 61 SIEAILCSGDSPVTLDILRLLP-KLRLVVTASAGVNHIHMPECRRRGIAVANAGSIF----------SDDAADAAVGLLI 129 (331)
Q Consensus 61 ~~d~ii~~~~~~i~~~~l~~~p-~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~----------~~~vAE~al~l~L 129 (331)
++|+|+.-. +.+.+-++.++ .--+|+......|.=-++.+.++||.+..-.... =.++|+.+
T Consensus 65 ~~diilkV~--~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IA----- 137 (509)
T PRK09424 65 QSDIILKVN--APSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIA----- 137 (509)
T ss_pred cCCEEEEeC--CCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhh-----
Confidence 467777422 23444566665 4456666655555545777888998887521111 01233322
Q ss_pred HHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccc--
Q 020073 130 DVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAF-- 201 (331)
Q Consensus 130 ~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~-- 201 (331)
-+|-+....+.. ++.........| ...+.+|.|+|.|.+|...++.++.+|++|+++|+++.. .+...
T Consensus 138 -Gy~Av~~aa~~~--~~~~~g~~taaG-~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~ 213 (509)
T PRK09424 138 -GYRAVIEAAHEF--GRFFTGQITAAG-KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLE 213 (509)
T ss_pred -HHHHHHHHHHHh--cccCCCceeccC-CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEE
Confidence 122222222111 211110000112 456999999999999999999999999999999987644 22210
Q ss_pred c-----------------CC--------HHhhhcCCCEEEEeccCChh-hhhhccHHHHhcCCCCcEEEEcCC
Q 020073 202 Y-----------------SN--------VCELAANSDALIICCALTDQ-TRRMINREVMLALGKEGIIVNVGR 248 (331)
Q Consensus 202 ~-----------------~~--------l~ell~~aDiV~l~~P~t~~-t~~li~~~~l~~mk~ga~lIn~sr 248 (331)
. .+ +.+.++++|+|+.|...... ...++.++.++.||+|+++|++|-
T Consensus 214 i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 214 LDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred eccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0 01 11223579999998854221 234667889999999999999973
No 135
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.06 E-value=6.6e-06 Score=81.54 Aligned_cols=88 Identities=22% Similarity=0.315 Sum_probs=66.0
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-------CC--ccccCCHHhhhcCCCEEEEeccCChhhhh
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-------VP--YAFYSNVCELAANSDALIICCALTDQTRR 227 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------~~--~~~~~~l~ell~~aDiV~l~~P~t~~t~~ 227 (331)
++.|++++|||.|.||+.+++.++..|+ +|++++|+... .+ .....++.+.+.++|+|+.|+|.. ..
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence 4789999999999999999999999998 79999998654 11 111245667788999999997643 44
Q ss_pred hccHHHHhcC-----CCCcEEEEcCC
Q 020073 228 MINREVMLAL-----GKEGIIVNVGR 248 (331)
Q Consensus 228 li~~~~l~~m-----k~ga~lIn~sr 248 (331)
+++++.++.+ +.+.++||.+-
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 6777777654 24567888764
No 136
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.06 E-value=1.1e-05 Score=75.01 Aligned_cols=100 Identities=16% Similarity=0.281 Sum_probs=68.6
Q ss_pred ceEEEEecChHHHHHHHHHhhC--CCEE-EEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAF--GCNV-LYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMINR 231 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~--G~~V-~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~ 231 (331)
.++||||+|.||+.+++.+... ++++ .++|+++.. .+...+.++++++.++|+|+.|+|.... ..++ .
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~-~~~~-~ 79 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAV-EEVV-P 79 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHH-HHHH-H
Confidence 4799999999999999998765 5664 467887643 1233457899998999999999874322 1111 2
Q ss_pred HHHhcCCCCcEEEEcCCCCccCH---HHHHHHHHhCCc
Q 020073 232 EVMLALGKEGIIVNVGRGAVIDE---NEMVRCLVRGEI 266 (331)
Q Consensus 232 ~~l~~mk~ga~lIn~srg~~vd~---~al~~aL~~~~i 266 (331)
..++.|.-++..+-|.+.|. +.|.++.+++..
T Consensus 80 ---~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~ 114 (265)
T PRK13304 80 ---KSLENGKDVIIMSVGALADKELFLKLYKLAKENNC 114 (265)
T ss_pred ---HHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCC
Confidence 23455666666788887764 456666666553
No 137
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.04 E-value=2.7e-05 Score=71.01 Aligned_cols=100 Identities=15% Similarity=0.271 Sum_probs=67.9
Q ss_pred CCceEEEEecChHHHHHHHHHhhCC---CE-EEEECCCC-CC-------CCccccCCHHhhhcCCCEEEEeccCChhhhh
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFG---CN-VLYNSRSK-KP-------VPYAFYSNVCELAANSDALIICCALTDQTRR 227 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G---~~-V~~~~~~~-~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~ 227 (331)
.+.+|+|||+|.||+.+++.+...| .+ |++++++. +. .+.....+.+++++++|+|++++|.. ..+.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHH
Confidence 3578999999999999999987665 33 66777642 22 12333467888999999999999854 3344
Q ss_pred hccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073 228 MINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG 264 (331)
Q Consensus 228 li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~ 264 (331)
++ ++.-..++ +.++|+++-| ++.+.|.+.+..+
T Consensus 82 v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 82 LL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred HH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence 43 22222234 5689999766 5555677766544
No 138
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=98.03 E-value=9e-05 Score=67.36 Aligned_cols=148 Identities=16% Similarity=0.145 Sum_probs=100.8
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCCE---EEEECCCC----CCC------------Cc--ccc-CCHHhhhcCCCE
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCN---VLYNSRSK----KPV------------PY--AFY-SNVCELAANSDA 214 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~---V~~~~~~~----~~~------------~~--~~~-~~l~ell~~aDi 214 (331)
.++.++++.|+|.|.+|+.+|..|...|++ |+.+||+. ... .. ... .++.+.++++|+
T Consensus 21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv 100 (226)
T cd05311 21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV 100 (226)
T ss_pred CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence 457889999999999999999999999984 99999982 210 00 011 267788889999
Q ss_pred EEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCC-ceEEEeecCCCCCCCCCccccCCceEEc
Q 020073 215 LIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGE-IAGAGLDVFENEPYVPKELLELDNVVLQ 293 (331)
Q Consensus 215 V~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~-i~ga~lDV~~~EP~~~~~L~~~~nvilT 293 (331)
|+.+.| .++++.+.++.|.++.++...+... .+.-+.+|.+.|. |..-|. +. -...-.|+++-
T Consensus 101 lIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP~--~e~~~~~A~~~ga~i~a~G~-----~~----~~~Q~nn~~~f 164 (226)
T cd05311 101 FIGVSR-----PGVVKKEMIKKMAKDPIVFALANPV--PEIWPEEAKEAGADIVATGR-----SD----FPNQVNNVLGF 164 (226)
T ss_pred EEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCCC--CcCCHHHHHHcCCcEEEeCC-----CC----Cccccceeeec
Confidence 999875 4678889999999999888888432 4544555555444 333332 11 13355689999
Q ss_pred CCCCCCcH-----HHHHHHHHHHHHHHHHHHc
Q 020073 294 PHRAVFTS-----ECFVDLCELAVGNLEALFS 320 (331)
Q Consensus 294 PH~a~~t~-----~~~~~~~~~~~~nl~~~~~ 320 (331)
|=++-... .--+.|...+++-|-.+..
T Consensus 165 Pg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~ 196 (226)
T cd05311 165 PGIFRGALDVRATKITEEMKLAAAEAIADLAE 196 (226)
T ss_pred chhhHHHHHcCCcCCCHHHHHHHHHHHHhhCC
Confidence 97764222 2235666666666666554
No 139
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.02 E-value=9.8e-06 Score=71.05 Aligned_cols=108 Identities=19% Similarity=0.263 Sum_probs=72.0
Q ss_pred eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----------------CC-------------ccccCCHHhhhcCC
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------------VP-------------YAFYSNVCELAANS 212 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------------~~-------------~~~~~~l~ell~~a 212 (331)
+|+|||.|.||+.+|..+...|++|..+|+++.. .+ .....+++++. +|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 6999999999999999999999999999987643 00 01236788888 99
Q ss_pred CEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecC
Q 020073 213 DALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVF 274 (331)
Q Consensus 213 DiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~ 274 (331)
|+|+=++|.+-+.+.-+-++.-+.++++++|...+++ +.-..|...+.. .-+..++=.|
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~~-p~R~ig~Hf~ 138 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALSR-PERFIGMHFF 138 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSST-GGGEEEEEE-
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccCc-CceEEEEecc
Confidence 9999999988887776656666677888887655433 455556666542 2233455444
No 140
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.00 E-value=3.4e-05 Score=72.17 Aligned_cols=126 Identities=21% Similarity=0.297 Sum_probs=89.6
Q ss_pred CccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073 156 GSKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 156 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
+.++.||++.||| -..+|+.+|..|...|+.|+.+... ..++.+.+++||+|+.++. ..++|+.+++
T Consensus 153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~--------t~~l~~~~~~ADIvI~AvG----~p~~i~~~~i 220 (284)
T PRK14190 153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK--------TKNLAELTKQADILIVAVG----KPKLITADMV 220 (284)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC--------chhHHHHHHhCCEEEEecC----CCCcCCHHHc
Confidence 4479999999999 5678999999999999999887532 2479999999999999985 3358988885
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN 314 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n 314 (331)
|+|+++||+|.-.+ .+|++ .-||-..+ ..+ ---.+||--||.-.-+..-+.+.+++-
T Consensus 221 ---k~gavVIDvGi~~~----------~~gkl---~GDvd~e~------v~~-~a~~iTPVPGGVGpvT~a~L~~N~~~a 277 (284)
T PRK14190 221 ---KEGAVVIDVGVNRL----------ENGKL---CGDVDFDN------VKE-KASYITPVPGGVGPMTITMLMHNTVEL 277 (284)
T ss_pred ---CCCCEEEEeecccc----------CCCCe---eccCcHHH------Hhh-hceEecCCCCCChHHHHHHHHHHHHHH
Confidence 89999999996653 23444 35662111 111 123699988887665555444444443
Q ss_pred HH
Q 020073 315 LE 316 (331)
Q Consensus 315 l~ 316 (331)
.+
T Consensus 278 ~~ 279 (284)
T PRK14190 278 AK 279 (284)
T ss_pred HH
Confidence 33
No 141
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.98 E-value=3.3e-05 Score=71.61 Aligned_cols=96 Identities=20% Similarity=0.330 Sum_probs=72.9
Q ss_pred ceEEEEecChHHHHHHHHHhhCC----CEEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFG----CNVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN 230 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G----~~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~ 230 (331)
++|||||+|+||++++..+...| .+|++.+|+.+. .+.....+..++..++|+|++++. |+ .-
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq----~~ 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQ----DL 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hH----hH
Confidence 57999999999999999999888 589999998765 222225677889999999999984 21 22
Q ss_pred HHHHhcCC---CCcEEEEcCCCCccCHHHHHHHHHhCC
Q 020073 231 REVMLALG---KEGIIVNVGRGAVIDENEMVRCLVRGE 265 (331)
Q Consensus 231 ~~~l~~mk---~ga~lIn~srg~~vd~~al~~aL~~~~ 265 (331)
.+.++.++ ++.++|.++-| +..+.|.+.|...+
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~~~~ 111 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLGGLR 111 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcCCCc
Confidence 45556665 68899999877 56677777776333
No 142
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.97 E-value=3e-05 Score=72.36 Aligned_cols=120 Identities=16% Similarity=0.163 Sum_probs=84.3
Q ss_pred CccCCCceEEEEecC-hHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073 156 GSKLGGKRVGIVGLG-NIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 156 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
+.++.||++.|||-| .+|+.+|..|...|+.|..+... ..++.+..++||+|++++. ..+++..++
T Consensus 152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~--------T~~l~~~~~~ADIvV~AvG----kp~~i~~~~- 218 (281)
T PRK14183 152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF--------TKDLKAHTKKADIVIVGVG----KPNLITEDM- 218 (281)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------CcCHHHHHhhCCEEEEecC----cccccCHHH-
Confidence 347999999999988 89999999999999999876432 2468899999999999985 345788877
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHH
Q 020073 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCEL 310 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~ 310 (331)
.|+|+++||+|--.+. .|++ .-||-..+-. . ---.+||=-||.-.-+..-+.+.
T Consensus 219 --vk~gavvIDvGin~~~----------~gkl---~GDVd~~~~~------~-~a~~iTPVPGGVGpvT~a~L~~N 272 (281)
T PRK14183 219 --VKEGAIVIDIGINRTE----------DGRL---VGDVDFENVA------K-KCSYITPVPGGVGPMTIAMLLSN 272 (281)
T ss_pred --cCCCcEEEEeeccccC----------CCCe---ECCccHHHHH------h-hceEecCCCCCChHHHHHHHHHH
Confidence 5899999999944321 2444 3566322110 0 11248997777655444433333
No 143
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.97 E-value=5.1e-05 Score=70.91 Aligned_cols=129 Identities=17% Similarity=0.277 Sum_probs=90.0
Q ss_pred CccCCCceEEEEecC-hHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073 156 GSKLGGKRVGIVGLG-NIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 156 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.+... ..++.+..++||+|+++++- .+++..+.
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~--------T~~l~~~~~~ADIvI~AvG~----~~~i~~~~- 218 (284)
T PRK14170 152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR--------TKDLPQVAKEADILVVATGL----AKFVKKDY- 218 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------CCCHHHHHhhCCEEEEecCC----cCccCHHH-
Confidence 457999999999955 57999999999999999876532 24699999999999999863 35788877
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN 314 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n 314 (331)
.|+|+++||+|--.+ .+|++ .-||-... ..+. --.+||=-||.-.-+..-+.+.+++-
T Consensus 219 --vk~GavVIDvGin~~----------~~gkl---~GDvdfe~------~~~~-a~~iTPVPGGVGpvT~a~L~~N~~~a 276 (284)
T PRK14170 219 --IKPGAIVIDVGMDRD----------ENNKL---CGDVDFDD------VVEE-AGFITPVPGGVGPMTITMLLANTLKA 276 (284)
T ss_pred --cCCCCEEEEccCccc----------CCCCe---ecccchHH------HHhh-ccEecCCCCChHHHHHHHHHHHHHHH
Confidence 589999999996553 13555 34552111 1111 12689987887665555555555554
Q ss_pred HHHHH
Q 020073 315 LEALF 319 (331)
Q Consensus 315 l~~~~ 319 (331)
.++.+
T Consensus 277 ~~~~~ 281 (284)
T PRK14170 277 AKRIW 281 (284)
T ss_pred HHHHh
Confidence 44443
No 144
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.96 E-value=0.00014 Score=68.09 Aligned_cols=134 Identities=21% Similarity=0.193 Sum_probs=92.0
Q ss_pred CccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073 156 GSKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 156 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
+.++.||++.||| -..+|+.+|..|...|+.|+.+... ..++.+..++||+|++++. ..++++.++
T Consensus 150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~--------T~~l~~~~~~ADIvIsAvG----kp~~i~~~~- 216 (287)
T PRK14173 150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSK--------TQDLPAVTRRADVLVVAVG----RPHLITPEM- 216 (287)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCC--------CCCHHHHHhhCCEEEEecC----CcCccCHHH-
Confidence 3478999999999 5668999999999999999876542 2468999999999999985 236888877
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN 314 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n 314 (331)
.|+|+++||+|--.+.+ ++|+. ...-||- .+ ..... -.+||=-||.-.-+..-+.+.+++-
T Consensus 217 --vk~GavVIDVGin~~~~--------~~gk~-~l~GDVd-~~------v~~~a-~~iTPVPGGVGp~T~a~L~~N~~~a 277 (287)
T PRK14173 217 --VRPGAVVVDVGINRVGG--------NGGRD-ILTGDVH-PE------VAEVA-GALTPVPGGVGPMTVAMLMANTVIA 277 (287)
T ss_pred --cCCCCEEEEccCccccC--------CCCce-eeecccc-Hh------HHhhC-cEEecCCCChhHHHHHHHHHHHHHH
Confidence 49999999999665422 13441 1345664 11 11111 2589987886665555555555555
Q ss_pred HHHHHcC
Q 020073 315 LEALFSN 321 (331)
Q Consensus 315 l~~~~~g 321 (331)
.++...|
T Consensus 278 ~~~~~~~ 284 (287)
T PRK14173 278 ALRRRGG 284 (287)
T ss_pred HHHHccC
Confidence 4554444
No 145
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.95 E-value=2e-05 Score=71.16 Aligned_cols=88 Identities=16% Similarity=0.241 Sum_probs=62.1
Q ss_pred ceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCC--------------Cc---cccCCHHhhhcCCCEEEEeccCCh
Q 020073 162 KRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPV--------------PY---AFYSNVCELAANSDALIICCALTD 223 (331)
Q Consensus 162 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~--------------~~---~~~~~l~ell~~aDiV~l~~P~t~ 223 (331)
++|+||| .|.||+.+|+.|...|.+|.+++|+++.. +. ....+..+.++++|+|++++|..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~- 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD- 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-
Confidence 3699997 99999999999999999999999876430 00 11235678899999999999954
Q ss_pred hhhhhccHHHHhcCCCCcEEEEcCCCCcc
Q 020073 224 QTRRMINREVMLALGKEGIIVNVGRGAVI 252 (331)
Q Consensus 224 ~t~~li~~~~l~~mk~ga~lIn~srg~~v 252 (331)
....++ ++.-..++ +.++|++.-|--.
T Consensus 80 ~~~~~l-~~l~~~l~-~~vvI~~~ngi~~ 106 (219)
T TIGR01915 80 HVLKTL-ESLRDELS-GKLVISPVVPLAS 106 (219)
T ss_pred HHHHHH-HHHHHhcc-CCEEEEeccCcee
Confidence 333333 22222343 5799999776433
No 146
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.95 E-value=4.2e-05 Score=73.33 Aligned_cols=102 Identities=19% Similarity=0.279 Sum_probs=72.7
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCcc-----------------ccCCHHhhhcCCCEEEEec
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYA-----------------FYSNVCELAANSDALIICC 219 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~-----------------~~~~l~ell~~aDiV~l~~ 219 (331)
++|+|||.|.||..+|..|...|.+|.+++|+... .+.. ...+. +.++.+|+|++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~v 81 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTV 81 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEe
Confidence 57999999999999999999999999999986421 1100 12234 5678999999999
Q ss_pred cCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073 220 ALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA 267 (331)
Q Consensus 220 P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ 267 (331)
|.. .....+ ......++++.++|.+.-| +-..+.+.+.+...++.
T Consensus 82 k~~-~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~ 126 (341)
T PRK08229 82 KSA-ATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVL 126 (341)
T ss_pred cCc-chHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEE
Confidence 854 445554 4455567888988888654 44556677777665543
No 147
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.94 E-value=6.1e-05 Score=70.51 Aligned_cols=127 Identities=18% Similarity=0.206 Sum_probs=88.2
Q ss_pred ccCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073 157 SKLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVML 235 (331)
Q Consensus 157 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~ 235 (331)
.++.||++.|||- ..+|+.+|..|...|+.|+.+... ..+|.+..++||+|++++.- .++|..+.
T Consensus 155 i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~--------T~~L~~~~~~ADIvV~AvGk----p~~i~~~~-- 220 (288)
T PRK14171 155 PNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK--------THNLSSITSKADIVVAAIGS----PLKLTAEY-- 220 (288)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------CCCHHHHHhhCCEEEEccCC----CCccCHHH--
Confidence 4689999999995 567999999999999999876532 24699999999999999862 35888877
Q ss_pred cCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHH
Q 020073 236 ALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNL 315 (331)
Q Consensus 236 ~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl 315 (331)
.|+|+++||+|--.+ .+|++ .-||-...- .. .=-.+||=-||.-.-+..-+.+.+++-.
T Consensus 221 -vk~GavVIDvGin~~----------~~gkl---~GDVd~~~v------~~-~a~~iTPVPGGVGp~T~a~L~~N~v~a~ 279 (288)
T PRK14171 221 -FNPESIVIDVGINRI----------SGNKI---IGDVDFENV------KS-KVKYITPVPGGIGPMTIAFLLKNTVKAF 279 (288)
T ss_pred -cCCCCEEEEeecccc----------CCCCe---ECCccHHHH------Hh-hceEeCCCCCCcHHHHHHHHHHHHHHHH
Confidence 599999999984332 24454 346631111 00 0126899888876655555555555444
Q ss_pred HHH
Q 020073 316 EAL 318 (331)
Q Consensus 316 ~~~ 318 (331)
++.
T Consensus 280 ~~~ 282 (288)
T PRK14171 280 KDS 282 (288)
T ss_pred HHH
Confidence 443
No 148
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.92 E-value=1.7e-05 Score=69.85 Aligned_cols=131 Identities=15% Similarity=0.182 Sum_probs=75.4
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------------CC-------------ccccCCHHhhhcCCCEE
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------------VP-------------YAFYSNVCELAANSDAL 215 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------------~~-------------~~~~~~l~ell~~aDiV 215 (331)
++|+|||+|.+|..+|..+...|++|+++|.+.+. .+ .....+..+.+++||++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 58999999999999999999999999999976542 00 01234677889999999
Q ss_pred EEeccCChhhhhhc--------cHHHHhcCCCCcEEEEcCCCCccCHH-HHHHHHHhCCceEEEee-cCCCCCCCC----
Q 020073 216 IICCALTDQTRRMI--------NREVMLALGKEGIIVNVGRGAVIDEN-EMVRCLVRGEIAGAGLD-VFENEPYVP---- 281 (331)
Q Consensus 216 ~l~~P~t~~t~~li--------~~~~l~~mk~ga~lIn~srg~~vd~~-al~~aL~~~~i~ga~lD-V~~~EP~~~---- 281 (331)
++|+|......+-. -......++++.++|.-|.-.+=..+ -+...|++....+.-++ +|-+|=..+
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~ 160 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI 160 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc
Confidence 99998433222221 23445567899999999987775555 34455554332111111 244554433
Q ss_pred CccccCCceEE
Q 020073 282 KELLELDNVVL 292 (331)
Q Consensus 282 ~~L~~~~nvil 292 (331)
.++...|+|++
T Consensus 161 ~d~~~~~rvV~ 171 (185)
T PF03721_consen 161 EDFRNPPRVVG 171 (185)
T ss_dssp HHHHSSSEEEE
T ss_pred hhccCCCEEEE
Confidence 24778888853
No 149
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.92 E-value=4.5e-05 Score=71.25 Aligned_cols=120 Identities=13% Similarity=0.160 Sum_probs=84.7
Q ss_pred CccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073 156 GSKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 156 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
+.++.||++.||| -..+|+.+|..|...|+.|+.+... ..++.+..++||+|++++. ..+++..++
T Consensus 154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~--------T~~l~~~~~~ADIvIsAvG----k~~~i~~~~- 220 (284)
T PRK14177 154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK--------TQNLPSIVRQADIIVGAVG----KPEFIKADW- 220 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------CCCHHHHHhhCCEEEEeCC----CcCccCHHH-
Confidence 3468999999999 5568999999999999999987642 2478999999999999986 345788777
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN 314 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n 314 (331)
.|+|+++||+|--. .+ .-||-..+ ... .--.+||--||.-.-+..-+.+.+++.
T Consensus 221 --ik~gavVIDvGin~--------------~~---~GDVd~~~------v~~-~a~~iTPVPGGVGp~T~a~L~~N~~~a 274 (284)
T PRK14177 221 --ISEGAVLLDAGYNP--------------GN---VGDIEISK------AKD-KSSFYTPVPGGVGPMTIAVLLLQTLYS 274 (284)
T ss_pred --cCCCCEEEEecCcc--------------cc---cCCcCHHH------Hhh-hccEecCCCCCChHHHHHHHHHHHHHH
Confidence 59999999998433 11 22442111 111 123699998887665544444444433
No 150
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.91 E-value=8.6e-05 Score=69.68 Aligned_cols=102 Identities=20% Similarity=0.247 Sum_probs=71.0
Q ss_pred eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCc-----------cccCCHHhhhcCCCEEEEeccCChhh
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPY-----------AFYSNVCELAANSDALIICCALTDQT 225 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~-----------~~~~~l~ell~~aDiV~l~~P~t~~t 225 (331)
+|+|||.|.||..+|..|...|.+|.+++|+.+. .+. ....+..++ +.+|+|++++|.. ++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~~ 79 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-QL 79 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-cH
Confidence 6999999999999999999989999999885433 111 112345555 8899999999854 44
Q ss_pred hhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceE
Q 020073 226 RRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAG 268 (331)
Q Consensus 226 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~g 268 (331)
..++ +.....+.+++.+|...-| +-.++.+.+.+....+.+
T Consensus 80 ~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~ 120 (304)
T PRK06522 80 PAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLG 120 (304)
T ss_pred HHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEE
Confidence 5444 3344456677888877776 334566666666555543
No 151
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.90 E-value=8.3e-05 Score=69.98 Aligned_cols=131 Identities=17% Similarity=0.182 Sum_probs=90.7
Q ss_pred CccCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073 156 GSKLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 156 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
+.++.||++.|||- ..+|+.+|..|...|+.|+.+... ..++.+..++||+|+++++- .+++..++
T Consensus 153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~--------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~- 219 (297)
T PRK14186 153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR--------TQDLASITREADILVAAAGR----PNLIGAEM- 219 (297)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------CCCHHHHHhhCCEEEEccCC----cCccCHHH-
Confidence 34789999999995 567999999999999999877432 24799999999999999873 35788877
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN 314 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n 314 (331)
+|+|+++||+|--.+.+.. ++|++ .-||-..+ ..+. --.+||--||.-.-+..-+.+.+++-
T Consensus 220 --ik~gavVIDvGin~~~~~~------~~gkl---~GDvd~~~------v~~~-a~~iTPVPGGVGp~T~a~L~~Nl~~a 281 (297)
T PRK14186 220 --VKPGAVVVDVGIHRLPSSD------GKTRL---CGDVDFEE------VEPV-AAAITPVPGGVGPMTVTMLLVNTVLS 281 (297)
T ss_pred --cCCCCEEEEeccccccccc------cCCce---eCCccHHH------HHhh-ceEecCCCCCchHHHHHHHHHHHHHH
Confidence 5999999999965532211 13444 35663211 1111 23699998887765555555555444
Q ss_pred HHH
Q 020073 315 LEA 317 (331)
Q Consensus 315 l~~ 317 (331)
.++
T Consensus 282 ~~~ 284 (297)
T PRK14186 282 WQK 284 (297)
T ss_pred HHH
Confidence 443
No 152
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.90 E-value=7.9e-05 Score=69.46 Aligned_cols=116 Identities=22% Similarity=0.311 Sum_probs=83.1
Q ss_pred ccCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073 157 SKLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVML 235 (331)
Q Consensus 157 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~ 235 (331)
.++.||++.|||- ..+|+.+|..|...|+.|+.+... ..++.+..++||+|+++++. .++|..+.
T Consensus 154 i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~--------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~-- 219 (278)
T PRK14172 154 IDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK--------TKNLKEVCKKADILVVAIGR----PKFIDEEY-- 219 (278)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------CCCHHHHHhhCCEEEEcCCC----cCccCHHH--
Confidence 4689999999995 567999999999999999887642 24799999999999999863 35788877
Q ss_pred cCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHH
Q 020073 236 ALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLC 308 (331)
Q Consensus 236 ~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~ 308 (331)
.|+|+++||+|--.+ .|++ .-||-..+ ..+ ---.+||--||.-.-+..-+.
T Consensus 220 -ik~gavVIDvGin~~-----------~gkl---~GDvd~~~------v~~-~a~~iTPVPGGVGp~T~a~L~ 270 (278)
T PRK14172 220 -VKEGAIVIDVGTSSV-----------NGKI---TGDVNFDK------VID-KASYITPVPGGVGSLTTTLLI 270 (278)
T ss_pred -cCCCcEEEEeecccc-----------CCce---eeeccHHH------HHh-hccEecCCCCCccHHHHHHHH
Confidence 599999999974332 2454 35662111 111 123589998887664444333
No 153
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.89 E-value=5.7e-05 Score=70.57 Aligned_cols=127 Identities=19% Similarity=0.235 Sum_probs=88.1
Q ss_pred CccCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073 156 GSKLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 156 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
+.++.||++.|||- ..+|+.+|..|...|+.|+.+... ..+|.+..++||+|+++++- .++++.++
T Consensus 151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~--------T~~l~~~~~~ADIvI~AvG~----p~~i~~~~- 217 (282)
T PRK14169 151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK--------TRNLKQLTKEADILVVAVGV----PHFIGADA- 217 (282)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCC--------CCCHHHHHhhCCEEEEccCC----cCccCHHH-
Confidence 34689999999995 567999999999999999877432 24699999999999999863 35788876
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN 314 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n 314 (331)
+|+|+++||+|--.+ .+|++ .-||-..+- .. .--.+||=-||.-.-+..-+.+.+++-
T Consensus 218 --vk~GavVIDvGin~~----------~~gkl---~GDVd~~~v------~~-~a~~iTPVPGGVGp~T~a~L~~N~~~a 275 (282)
T PRK14169 218 --VKPGAVVIDVGISRG----------ADGKL---LGDVDEAAV------AP-IASAITPVPGGVGPMTIASLMAQTVTL 275 (282)
T ss_pred --cCCCcEEEEeecccc----------CCCCe---eecCcHHHH------Hh-hccEecCCCCCcHHHHHHHHHHHHHHH
Confidence 599999999985442 13454 356632111 11 123689977876655544444444444
Q ss_pred HHH
Q 020073 315 LEA 317 (331)
Q Consensus 315 l~~ 317 (331)
.++
T Consensus 276 ~~~ 278 (282)
T PRK14169 276 AKR 278 (282)
T ss_pred HHH
Confidence 333
No 154
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.89 E-value=5.3e-05 Score=70.76 Aligned_cols=123 Identities=20% Similarity=0.236 Sum_probs=85.7
Q ss_pred CccCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073 156 GSKLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 156 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
+.++.||++.|||- ..+|+.+|..|...|+.|+.+... ..++.+..++||+|++++. ..++++++.
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~--------T~nl~~~~~~ADIvIsAvG----kp~~i~~~~- 218 (282)
T PRK14166 152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK--------TKDLSLYTRQADLIIVAAG----CVNLLRSDM- 218 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------CCCHHHHHhhCCEEEEcCC----CcCccCHHH-
Confidence 34689999999995 567999999999999999877542 2469999999999999986 345788876
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHH
Q 020073 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVG 313 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~ 313 (331)
.|+|+++||+|--.+ .+|++ .-||-... ..+ .--.+||=-||.-.-+..-+.+.+++
T Consensus 219 --vk~GavVIDvGin~~----------~~gkl---~GDVd~~~------v~~-~a~~iTPVPGGVGp~T~a~L~~N~v~ 275 (282)
T PRK14166 219 --VKEGVIVVDVGINRL----------ESGKI---VGDVDFEE------VSK-KSSYITPVPGGVGPMTIAMLLENTVK 275 (282)
T ss_pred --cCCCCEEEEeccccc----------CCCCe---eCCCCHHH------HHh-hccEecCCCCCchHHHHHHHHHHHHH
Confidence 599999999984332 13444 34553111 111 12368998788766554444444443
No 155
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.88 E-value=2.5e-05 Score=76.49 Aligned_cols=89 Identities=26% Similarity=0.341 Sum_probs=68.0
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-------CC--ccccCCHHhhhcCCCEEEEeccCChhhhh
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-------VP--YAFYSNVCELAANSDALIICCALTDQTRR 227 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------~~--~~~~~~l~ell~~aDiV~l~~P~t~~t~~ 227 (331)
+|+++++.|||+|.||+-+|+.|...|. +|++.+|+..+ .+ +....++.+.+.++|+|+++ |.+...
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvViss---Tsa~~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISS---TSAPHP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEe---cCCCcc
Confidence 4899999999999999999999999995 78999999765 22 23346778899999999998 445566
Q ss_pred hccHHHHhcCC---CCcEEEEcCCC
Q 020073 228 MINREVMLALG---KEGIIVNVGRG 249 (331)
Q Consensus 228 li~~~~l~~mk---~ga~lIn~srg 249 (331)
+|..+.+...- +.-++||.+=.
T Consensus 252 ii~~~~ve~a~~~r~~~livDiavP 276 (414)
T COG0373 252 IITREMVERALKIRKRLLIVDIAVP 276 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEEecCC
Confidence 77766665531 11477777643
No 156
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.88 E-value=3.5e-05 Score=73.12 Aligned_cols=90 Identities=21% Similarity=0.350 Sum_probs=69.1
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------------C-------CccccCCHHhhhcCCCEEEEeccC
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------------V-------PYAFYSNVCELAANSDALIICCAL 221 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------------~-------~~~~~~~l~ell~~aDiV~l~~P~ 221 (331)
++|+|||.|..|.++|+.|...|.+|..|.|.++- . ......++.++++.||+|++.+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP- 80 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP- 80 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC-
Confidence 57999999999999999999999999999875321 1 12335689999999999999999
Q ss_pred ChhhhhhccHHHHhcCCCCcEEEEcCCCCccC
Q 020073 222 TDQTRRMINREVMLALGKEGIIVNVGRGAVID 253 (331)
Q Consensus 222 t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd 253 (331)
+...+..+.. .-..++++..+|+++-|=-.+
T Consensus 81 s~~~r~v~~~-l~~~l~~~~~iv~~sKGie~~ 111 (329)
T COG0240 81 SQALREVLRQ-LKPLLLKDAIIVSATKGLEPE 111 (329)
T ss_pred hHHHHHHHHH-HhhhccCCCeEEEEeccccCC
Confidence 4445554422 224568999999999876554
No 157
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.87 E-value=4.1e-05 Score=73.50 Aligned_cols=94 Identities=24% Similarity=0.366 Sum_probs=71.2
Q ss_pred CCccCCCceEEEEec-ChHHHHHHHHHhh-CCC-EEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChh
Q 020073 155 LGSKLGGKRVGIVGL-GNIGLQVAKRLQA-FGC-NVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQ 224 (331)
Q Consensus 155 ~~~~l~g~~vgIiG~-G~IG~~~A~~l~~-~G~-~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~ 224 (331)
++.++.|+++.|+|. |.||+.+++.|.. .|. +++.++|+..+ .......++++.+.++|+|+.+.. .
T Consensus 149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts---~ 225 (340)
T PRK14982 149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVAS---M 225 (340)
T ss_pred hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCc---C
Confidence 355799999999998 8999999999974 564 88899987544 111123467899999999887753 2
Q ss_pred hhh-hccHHHHhcCCCCcEEEEcCCCCccCH
Q 020073 225 TRR-MINREVMLALGKEGIIVNVGRGAVIDE 254 (331)
Q Consensus 225 t~~-li~~~~l~~mk~ga~lIn~srg~~vd~ 254 (331)
... .++++. ++++.++||+|+..=||.
T Consensus 226 ~~~~~I~~~~---l~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 226 PKGVEIDPET---LKKPCLMIDGGYPKNLDT 253 (340)
T ss_pred CcCCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence 334 378865 489999999999887775
No 158
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.86 E-value=6.3e-05 Score=70.26 Aligned_cols=78 Identities=21% Similarity=0.319 Sum_probs=65.0
Q ss_pred CccCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073 156 GSKLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 156 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
+.++.||++.|||- ..+|+.+|..|...|+.|+.+... ..++.+..++||+|+++++- .++|..++
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~--------T~dl~~~~k~ADIvIsAvGk----p~~i~~~~- 219 (282)
T PRK14180 153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF--------TTDLKSHTTKADILIVAVGK----PNFITADM- 219 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCC--------CCCHHHHhhhcCEEEEccCC----cCcCCHHH-
Confidence 34689999999995 567999999999999999887542 24789999999999999863 35788866
Q ss_pred hcCCCCcEEEEcCC
Q 020073 235 LALGKEGIIVNVGR 248 (331)
Q Consensus 235 ~~mk~ga~lIn~sr 248 (331)
.|+|+++||+|-
T Consensus 220 --vk~gavVIDvGi 231 (282)
T PRK14180 220 --VKEGAVVIDVGI 231 (282)
T ss_pred --cCCCcEEEEecc
Confidence 599999999984
No 159
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.84 E-value=7.6e-05 Score=71.12 Aligned_cols=83 Identities=16% Similarity=0.118 Sum_probs=61.0
Q ss_pred CCceEEEEecChHHHHHHHHHhh-CC-CEEEEECCCCCC-------C---C--ccccCCHHhhhcCCCEEEEeccCChhh
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQA-FG-CNVLYNSRSKKP-------V---P--YAFYSNVCELAANSDALIICCALTDQT 225 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~-~G-~~V~~~~~~~~~-------~---~--~~~~~~l~ell~~aDiV~l~~P~t~~t 225 (331)
..++++|||+|.+|+.+++.+.. ++ .+|.+|+|++++ . + .....++++++++||+|+.+.|..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence 46899999999999999986553 45 579999998754 1 1 223467889999999998887644
Q ss_pred hhhccHHHHhcCCCCcEEEEcCC
Q 020073 226 RRMINREVMLALGKEGIIVNVGR 248 (331)
Q Consensus 226 ~~li~~~~l~~mk~ga~lIn~sr 248 (331)
..++..+. +++|+.+.-++.
T Consensus 201 ~pvl~~~~---l~~g~~i~~ig~ 220 (314)
T PRK06141 201 EPLVRGEW---LKPGTHLDLVGN 220 (314)
T ss_pred CCEecHHH---cCCCCEEEeeCC
Confidence 56676644 699995444443
No 160
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.83 E-value=7.4e-05 Score=70.15 Aligned_cols=123 Identities=17% Similarity=0.225 Sum_probs=85.3
Q ss_pred CccCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073 156 GSKLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 156 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
+.++.||++.|||- ..+|+.+|..|...|+.|+.+... ..++.+..++||+|++++.- .+++..++
T Consensus 155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~--------T~~l~~~~~~ADIvVsAvGk----p~~i~~~~- 221 (294)
T PRK14187 155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSA--------TRDLADYCSKADILVAAVGI----PNFVKYSW- 221 (294)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCC--------CCCHHHHHhhCCEEEEccCC----cCccCHHH-
Confidence 34689999999995 567999999999999999887542 24689999999999999863 35788877
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhC---CceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHH
Q 020073 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRG---EIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELA 311 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~---~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~ 311 (331)
.|+|+++||+|--.+- .| ++ .-||-..+ ... .--.+||=-||.-.-+..-+.+.+
T Consensus 222 --ik~gaiVIDVGin~~~----------~~~~~kl---~GDvd~e~------v~~-~a~~iTPVPGGVGp~T~a~L~~N~ 279 (294)
T PRK14187 222 --IKKGAIVIDVGINSIE----------EGGVKKF---VGDVDFAE------VKK-KASAITPVPGGVGPMTIAFLMVNT 279 (294)
T ss_pred --cCCCCEEEEecccccC----------CCCccce---eCCccHHH------Hhh-hccEecCCCCCChHHHHHHHHHHH
Confidence 4899999999854421 12 33 45662111 111 123589987776655444444444
Q ss_pred HH
Q 020073 312 VG 313 (331)
Q Consensus 312 ~~ 313 (331)
++
T Consensus 280 ~~ 281 (294)
T PRK14187 280 VI 281 (294)
T ss_pred HH
Confidence 43
No 161
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.83 E-value=6.9e-05 Score=71.92 Aligned_cols=128 Identities=20% Similarity=0.233 Sum_probs=86.8
Q ss_pred CccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073 156 GSKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 156 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
+.++.||++.||| -..+|+.+|..|...|+.|+.+... ..++.+..++||||+.++. ..++|..+.
T Consensus 226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~--------T~nl~~~~r~ADIVIsAvG----kp~~i~~d~- 292 (364)
T PLN02616 226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR--------TKNPEEITREADIIISAVG----QPNMVRGSW- 292 (364)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC--------CCCHHHHHhhCCEEEEcCC----CcCcCCHHH-
Confidence 3468999999999 4567999999999999999887532 2479999999999999986 345788877
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhC-CceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHH
Q 020073 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRG-EIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVG 313 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~-~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~ 313 (331)
.|+|+++||+|--.+.+.. =.+| + ..-||-..+-. +. --.+||=-||.-.-+..-+.+.+++
T Consensus 293 --vK~GAvVIDVGIn~~~~~~-----~~~g~k---lvGDVdfe~v~---~~----as~ITPVPGGVGpmTva~Ll~N~~~ 355 (364)
T PLN02616 293 --IKPGAVVIDVGINPVEDAS-----SPRGYR---LVGDVCYEEAC---KV----ASAVTPVPGGVGPMTIAMLLSNTLT 355 (364)
T ss_pred --cCCCCEEEecccccccccc-----ccCCCe---EEecCcHHHHH---hh----ccccCCCCCchHHHHHHHHHHHHHH
Confidence 5999999999854321100 0113 3 35676432211 00 1258888888766554444444443
No 162
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.83 E-value=5.1e-05 Score=72.67 Aligned_cols=82 Identities=16% Similarity=0.205 Sum_probs=63.5
Q ss_pred CceEEEEecChHHHHHHHHHhh-C-CCEEEEECCCCCC----------CC--ccccCCHHhhhcCCCEEEEeccCChhhh
Q 020073 161 GKRVGIVGLGNIGLQVAKRLQA-F-GCNVLYNSRSKKP----------VP--YAFYSNVCELAANSDALIICCALTDQTR 226 (331)
Q Consensus 161 g~~vgIiG~G~IG~~~A~~l~~-~-G~~V~~~~~~~~~----------~~--~~~~~~l~ell~~aDiV~l~~P~t~~t~ 226 (331)
-+++||||+|.+|+..++.+.. + .-+|.+|+|+.++ .+ .....+.++++++||+|++|+|.+ .
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---~ 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---K 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---C
Confidence 4789999999999998877654 2 2478999998764 11 223578999999999999998754 4
Q ss_pred hhccHHHHhcCCCCcEEEEcCC
Q 020073 227 RMINREVMLALGKEGIIVNVGR 248 (331)
Q Consensus 227 ~li~~~~l~~mk~ga~lIn~sr 248 (331)
.++..+. +|||+.+..+|.
T Consensus 205 P~~~~~~---l~~g~~v~~vGs 223 (325)
T TIGR02371 205 PVVKADW---VSEGTHINAIGA 223 (325)
T ss_pred cEecHHH---cCCCCEEEecCC
Confidence 6776655 599999998884
No 163
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.82 E-value=9.6e-05 Score=69.55 Aligned_cols=101 Identities=21% Similarity=0.318 Sum_probs=70.9
Q ss_pred eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCc-------------cccCCHHhhhcCCCEEEEeccCCh
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPY-------------AFYSNVCELAANSDALIICCALTD 223 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~-------------~~~~~l~ell~~aDiV~l~~P~t~ 223 (331)
+|+|||.|.||..+|..|...|.+|.+++| .+. .+. ....+..++...+|+|++++|..
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~- 79 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY- 79 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc-
Confidence 699999999999999999998999999988 321 110 01234556678999999999854
Q ss_pred hhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073 224 QTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA 267 (331)
Q Consensus 224 ~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ 267 (331)
.+...+ +.....++++.++|.+.-| +-.++.+.+.+.+.++.
T Consensus 80 ~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305)
T PRK12921 80 QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305)
T ss_pred CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence 344444 3333446778888877555 44567777777665544
No 164
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.82 E-value=9.2e-05 Score=69.69 Aligned_cols=135 Identities=20% Similarity=0.190 Sum_probs=92.8
Q ss_pred CccCCCceEEEEecC-hHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073 156 GSKLGGKRVGIVGLG-NIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 156 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.+... ..++.+.+++||+|+.++.- .+++..+.
T Consensus 162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------T~nl~~~~~~ADIvv~AvGk----~~~i~~~~- 228 (299)
T PLN02516 162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------TPDPESIVREADIVIAAAGQ----AMMIKGDW- 228 (299)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------CCCHHHHHhhCCEEEEcCCC----cCccCHHH-
Confidence 347899999999955 57999999999999999887542 24699999999999999853 36888877
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhC-CceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHH
Q 020073 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRG-EIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVG 313 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~-~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~ 313 (331)
.|+|+++||+|--.+-+. ...+| + ..-||-..+- ...--.+||=-||.-.-+..-+.+.+++
T Consensus 229 --vk~gavVIDvGin~~~~~-----~~~~g~k---l~GDvd~e~v-------~~~a~~iTPVPGGVGp~T~a~L~~N~v~ 291 (299)
T PLN02516 229 --IKPGAAVIDVGTNAVSDP-----SKKSGYR---LVGDVDFAEV-------SKVAGWITPVPGGVGPMTVAMLLKNTVD 291 (299)
T ss_pred --cCCCCEEEEeeccccCcc-----cccCCCc---eEcCcChHHh-------hhhceEecCCCCCchHHHHHHHHHHHHH
Confidence 599999999985442211 11123 3 3456642111 0012258998788776666666666665
Q ss_pred HHHHHHc
Q 020073 314 NLEALFS 320 (331)
Q Consensus 314 nl~~~~~ 320 (331)
-.+++|+
T Consensus 292 a~~~~~~ 298 (299)
T PLN02516 292 GAKRVFA 298 (299)
T ss_pred HHHHHhh
Confidence 5555553
No 165
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.81 E-value=7.9e-05 Score=71.39 Aligned_cols=90 Identities=17% Similarity=0.223 Sum_probs=63.0
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCCCCcccc-CCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKPVPYAFY-SNVCELAANSDALIICCALTDQTRRMINREVML 235 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~~~~~-~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~ 235 (331)
++.|+++.|||.|.||+.+|+.|...|. +|++.+|+.....+... ...-+...++|+|+.|...|......+..+.++
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~ 250 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSWESLA 250 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHh
Confidence 5899999999999999999999999996 69999998754221110 011245679999999754344445566666665
Q ss_pred cCCCCcEEEEcCC
Q 020073 236 ALGKEGIIVNVGR 248 (331)
Q Consensus 236 ~mk~ga~lIn~sr 248 (331)
..++ -++||.+=
T Consensus 251 ~~~~-r~~iDLAv 262 (338)
T PRK00676 251 DIPD-RIVFDFNV 262 (338)
T ss_pred hccC-cEEEEecC
Confidence 4332 36777653
No 166
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.81 E-value=9.2e-05 Score=69.13 Aligned_cols=123 Identities=15% Similarity=0.131 Sum_probs=86.5
Q ss_pred ccCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073 157 SKLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVML 235 (331)
Q Consensus 157 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~ 235 (331)
.++.||++.|||- ..+|+.+|..|...|+.|+.+... ..++.+..++||+|+++++- .++|..++
T Consensus 153 i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~--------T~nl~~~~~~ADIvI~AvGk----~~~i~~~~-- 218 (282)
T PRK14182 153 VDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSR--------TADLAGEVGRADILVAAIGK----AELVKGAW-- 218 (282)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------CCCHHHHHhhCCEEEEecCC----cCccCHHH--
Confidence 4689999999995 567999999999889999887542 24689999999999999863 46888877
Q ss_pred cCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073 236 ALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN 314 (331)
Q Consensus 236 ~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n 314 (331)
.|+|+++||+|--.+. +|++ .-||-..+ .... --.+||=-||.-.-+..-+.+.+++.
T Consensus 219 -ik~gaiVIDvGin~~~----------~gkl---~GDVd~~~------v~~~-a~~iTPVPGGVGp~T~a~L~~N~~~~ 276 (282)
T PRK14182 219 -VKEGAVVIDVGMNRLA----------DGKL---VGDVEFAA------AAAR-ASAITPVPGGVGPMTRAMLLVNTVEL 276 (282)
T ss_pred -cCCCCEEEEeeceecC----------CCCe---eCCCCHHH------HHhh-ccEecCCCCCChHHHHHHHHHHHHHH
Confidence 5899999999855432 2454 34663211 1111 12589977776665555444444443
No 167
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.81 E-value=5.4e-05 Score=66.84 Aligned_cols=93 Identities=17% Similarity=0.157 Sum_probs=60.6
Q ss_pred CccCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC-------C----Cc-------cccCCHHhhhcCCCEEE
Q 020073 156 GSKLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP-------V----PY-------AFYSNVCELAANSDALI 216 (331)
Q Consensus 156 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~----~~-------~~~~~l~ell~~aDiV~ 216 (331)
+.+++++++.|+|. |.+|+.+++.+...|.+|..++|+..+ . +. ....++.+.++++|+|+
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi 102 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF 102 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence 34578999999995 999999999999999999999887543 0 00 00123346778888888
Q ss_pred EeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCcc
Q 020073 217 ICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVI 252 (331)
Q Consensus 217 l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~v 252 (331)
.+.|....+ .+.. -...+++.+++|+.+..-+
T Consensus 103 ~at~~g~~~--~~~~--~~~~~~~~vv~D~~~~~~~ 134 (194)
T cd01078 103 AAGAAGVEL--LEKL--AWAPKPLAVAADVNAVPPV 134 (194)
T ss_pred ECCCCCcee--chhh--hcccCceeEEEEccCCCCC
Confidence 887755331 1111 1123446677776665543
No 168
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.80 E-value=9.8e-05 Score=69.05 Aligned_cols=122 Identities=14% Similarity=0.207 Sum_probs=87.4
Q ss_pred CccCCCceEEEEe-cChHHHHHHHHHhh--CCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHH
Q 020073 156 GSKLGGKRVGIVG-LGNIGLQVAKRLQA--FGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINRE 232 (331)
Q Consensus 156 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~--~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~ 232 (331)
+.++.||++.||| -+.+|+.+|..|.. .|+.|+.+... ..++.+.+++||+|++++.-. ++|..+
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------T~~l~~~~k~ADIvV~AvGkp----~~i~~~ 220 (284)
T PRK14193 153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------TRDLAAHTRRADIIVAAAGVA----HLVTAD 220 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------CCCHHHHHHhCCEEEEecCCc----CccCHH
Confidence 4479999999999 56789999999987 78999887542 247999999999999998633 578887
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHH
Q 020073 233 VMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAV 312 (331)
Q Consensus 233 ~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~ 312 (331)
+ +|+|+++||+|.-.+ .+|++ .-||- .+ ..+.. -.+||--||.-.-+..-+.+.++
T Consensus 221 ~---ik~GavVIDvGin~~----------~~gkl---~GDvd-~~------v~~~a-~~iTPVPGGVGp~T~a~L~~N~~ 276 (284)
T PRK14193 221 M---VKPGAAVLDVGVSRA----------GDGKL---VGDVH-PD------VWEVA-GAVSPNPGGVGPMTRAFLLTNVV 276 (284)
T ss_pred H---cCCCCEEEEcccccc----------CCCcE---EeecC-Hh------HHhhC-CEEeCCCCChhHHHHHHHHHHHH
Confidence 7 599999999996553 34554 45664 11 11111 26899988876655444444444
Q ss_pred H
Q 020073 313 G 313 (331)
Q Consensus 313 ~ 313 (331)
+
T Consensus 277 ~ 277 (284)
T PRK14193 277 E 277 (284)
T ss_pred H
Confidence 3
No 169
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.80 E-value=4.8e-05 Score=71.22 Aligned_cols=93 Identities=19% Similarity=0.160 Sum_probs=62.4
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCC-CEEEEECCCCCC-------CCcc---cc-CCHHhhhcCCCEEEEeccCChhh
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFG-CNVLYNSRSKKP-------VPYA---FY-SNVCELAANSDALIICCALTDQT 225 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~-------~~~~---~~-~~l~ell~~aDiV~l~~P~t~~t 225 (331)
++.++++.|+|.|.+|++++..|...| .+|++++|+.++ .... .. .++.+.+.++|+|+.++|..-..
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~ 199 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSG 199 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCC
Confidence 577899999999999999999999999 689999998654 0100 01 13456778899999999876321
Q ss_pred hhhccHHHHhcCCCCcEEEEcCCCC
Q 020073 226 RRMINREVMLALGKEGIIVNVGRGA 250 (331)
Q Consensus 226 ~~li~~~~l~~mk~ga~lIn~srg~ 250 (331)
..-...-....++++++++++.-..
T Consensus 200 ~~~~~~~~~~~l~~~~~v~DivY~P 224 (278)
T PRK00258 200 ELPLPPLPLSLLRPGTIVYDMIYGP 224 (278)
T ss_pred CCCCCCCCHHHcCCCCEEEEeecCC
Confidence 1000011123356667777765533
No 170
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.79 E-value=4.6e-05 Score=75.24 Aligned_cols=86 Identities=15% Similarity=0.307 Sum_probs=63.3
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-------CC-c--cccCCHHhhhcCCCEEEEeccCChhhh
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-------VP-Y--AFYSNVCELAANSDALIICCALTDQTR 226 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------~~-~--~~~~~l~ell~~aDiV~l~~P~t~~t~ 226 (331)
++.|+++.|||.|.||+.+++.|...|. +|++++|+..+ .+ . ..+.++.+++.++|+|+.|++. ..
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a---~~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNV---LE 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCC---CC
Confidence 5889999999999999999999999996 79999998654 11 1 1235567789999999999654 34
Q ss_pred hhccHHHHhcCCCCcEEEEcCC
Q 020073 227 RMINREVMLALGKEGIIVNVGR 248 (331)
Q Consensus 227 ~li~~~~l~~mk~ga~lIn~sr 248 (331)
.+|..+.+. .+..++||.+=
T Consensus 255 ~vi~~~~~~--~~~~~~iDLav 274 (414)
T PRK13940 255 YIVTCKYVG--DKPRVFIDISI 274 (414)
T ss_pred eeECHHHhC--CCCeEEEEeCC
Confidence 566665542 22346666653
No 171
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.79 E-value=8.4e-05 Score=71.01 Aligned_cols=133 Identities=17% Similarity=0.187 Sum_probs=89.1
Q ss_pred CccCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073 156 GSKLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 156 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
+.++.||++.|||- ..+|+.+|..|...|+.|..+... ..++.+..++||||+.++.- .+++..++
T Consensus 209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~--------T~nl~~~~~~ADIvIsAvGk----p~~v~~d~- 275 (345)
T PLN02897 209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAF--------TKDPEQITRKADIVIAAAGI----PNLVRGSW- 275 (345)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCC--------CCCHHHHHhhCCEEEEccCC----cCccCHHH-
Confidence 44799999999995 457999999999999999876532 24689999999999999863 35788877
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN 314 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n 314 (331)
+|+|+++||+|--.+-+.. =++|. ...-||...+-. . ---.+||=-||.-.-+..-+.+.+++.
T Consensus 276 --vk~GavVIDVGin~~~~~~-----~~~g~--klvGDVdfe~v~------~-~as~iTPVPGGVGpmTvamLm~N~~~a 339 (345)
T PLN02897 276 --LKPGAVVIDVGTTPVEDSS-----CEFGY--RLVGDVCYEEAL------G-VASAITPVPGGVGPMTITMLLCNTLDA 339 (345)
T ss_pred --cCCCCEEEEcccccccccc-----ccCCC--eeEecccHHHHH------h-hccccCCCCCchhHHHHHHHHHHHHHH
Confidence 5999999999854321100 01131 245677533221 0 012589987886665555555544444
Q ss_pred HHH
Q 020073 315 LEA 317 (331)
Q Consensus 315 l~~ 317 (331)
.++
T Consensus 340 ~~~ 342 (345)
T PLN02897 340 AKR 342 (345)
T ss_pred HHH
Confidence 443
No 172
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.78 E-value=9.9e-05 Score=71.15 Aligned_cols=89 Identities=17% Similarity=0.199 Sum_probs=65.4
Q ss_pred eEEEEecChHHHHHHHHHhhCC--------CEEEEECCCC-----C----------C---C-C------ccccCCHHhhh
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFG--------CNVLYNSRSK-----K----------P---V-P------YAFYSNVCELA 209 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G--------~~V~~~~~~~-----~----------~---~-~------~~~~~~l~ell 209 (331)
+|+|||.|+.|.++|..+...| .+|..|.|.. . . . + .....++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999998767 8999887622 0 0 1 1 12336789999
Q ss_pred cCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccC
Q 020073 210 ANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVID 253 (331)
Q Consensus 210 ~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd 253 (331)
+.||+|++++|. ...+.++ .+.-..++++..+|+++-|=-.+
T Consensus 81 ~~ADiIIlAVPs-~~i~~vl-~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 81 KGADILVFVIPH-QFLEGIC-KQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred hcCCEEEEECCh-HHHHHHH-HHHHhhcCCCCEEEEEeCCcccC
Confidence 999999999994 3444444 33444578889999998885443
No 173
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.78 E-value=0.00012 Score=68.64 Aligned_cols=127 Identities=22% Similarity=0.214 Sum_probs=84.6
Q ss_pred CccCCCceEEEEec-ChHHHHHHHHHhhC----CCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073 156 GSKLGGKRVGIVGL-GNIGLQVAKRLQAF----GCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMIN 230 (331)
Q Consensus 156 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~----G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~ 230 (331)
+.++.||++.|||- ..+|+.+|..|... ++.|+.+... ..++.+.+++||+|+++++- .+++.
T Consensus 148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~--------T~~l~~~~~~ADIvV~AvG~----p~~i~ 215 (287)
T PRK14181 148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ--------SENLTEILKTADIIIAAIGV----PLFIK 215 (287)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC--------CCCHHHHHhhCCEEEEccCC----cCccC
Confidence 34689999999995 56799999999887 7888877532 24799999999999999863 35788
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHH
Q 020073 231 REVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCEL 310 (331)
Q Consensus 231 ~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~ 310 (331)
.++ .|+|+++||+|--.+.+.. .+|. ...-||-..+-. . .--.+||=-||.-.-+..-+.+.
T Consensus 216 ~~~---ik~GavVIDvGin~~~~~~------~~g~--kl~GDVd~e~~~------~-~a~~iTPVPGGVGp~T~a~L~~N 277 (287)
T PRK14181 216 EEM---IAEKAVIVDVGTSRVPAAN------PKGY--ILVGDVDFNNVV------P-KCRAITPVPGGVGPMTVAMLMRN 277 (287)
T ss_pred HHH---cCCCCEEEEeccccccccc------CCCC--eeEeccchHHHH------h-hcccccCCCCchHHHHHHHHHHH
Confidence 877 5999999999854432210 1121 245566422210 0 01247887787665444444433
Q ss_pred HH
Q 020073 311 AV 312 (331)
Q Consensus 311 ~~ 312 (331)
++
T Consensus 278 ~~ 279 (287)
T PRK14181 278 TW 279 (287)
T ss_pred HH
Confidence 33
No 174
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=97.77 E-value=9e-05 Score=71.43 Aligned_cols=89 Identities=15% Similarity=0.178 Sum_probs=70.5
Q ss_pred HHHHHHHHhhCCCEEEEECCCCCC-----------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCc
Q 020073 173 GLQVAKRLQAFGCNVLYNSRSKKP-----------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEG 241 (331)
Q Consensus 173 G~~~A~~l~~~G~~V~~~~~~~~~-----------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga 241 (331)
|..+|..|...|.+|++||++... .+.....+..+++++||+|++|+|....++.++ ......+++|+
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence 789999999999999999997641 233344678888999999999999765577777 46777889999
Q ss_pred EEEEcCCCCccCH-HHHHHHHH
Q 020073 242 IIVNVGRGAVIDE-NEMVRCLV 262 (331)
Q Consensus 242 ~lIn~srg~~vd~-~al~~aL~ 262 (331)
++||++.++.... +.+.+.+.
T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHhc
Confidence 9999999876655 55666664
No 175
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.74 E-value=7.6e-05 Score=71.43 Aligned_cols=83 Identities=17% Similarity=0.196 Sum_probs=61.2
Q ss_pred EEEEecChHHHHHHHHHhh-CCCEEEEECC-CCCC-------CCc------------------cccCCHHhhhcCCCEEE
Q 020073 164 VGIVGLGNIGLQVAKRLQA-FGCNVLYNSR-SKKP-------VPY------------------AFYSNVCELAANSDALI 216 (331)
Q Consensus 164 vgIiG~G~IG~~~A~~l~~-~G~~V~~~~~-~~~~-------~~~------------------~~~~~l~ell~~aDiV~ 216 (331)
|||+|+|+||+.+++.+.. -+++|++++. .++. .++ ....++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6999999999999999764 4678776543 2221 011 01236889999999999
Q ss_pred EeccCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 020073 217 ICCALTDQTRRMINREVMLALGKEGIIVNVGRG 249 (331)
Q Consensus 217 l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg 249 (331)
.|+ +.+.+..+++.+.+|+.+++|+..-..
T Consensus 81 e~T---p~~~~~~na~~~~~~GakaVl~~~p~~ 110 (333)
T TIGR01546 81 DAT---PGGIGAKNKPLYEKAGVKAIFQGGEKA 110 (333)
T ss_pred ECC---CCCCChhhHHHHHhCCcCEEEECCCCC
Confidence 985 456778899999999999999875443
No 176
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.71 E-value=8.5e-05 Score=70.51 Aligned_cols=83 Identities=12% Similarity=0.074 Sum_probs=64.5
Q ss_pred CCceEEEEecChHHHHHHHHHhh-CCC-EEEEECCCCCC-------C---Cccc-cCCHHhhhcCCCEEEEeccCChhhh
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQA-FGC-NVLYNSRSKKP-------V---PYAF-YSNVCELAANSDALIICCALTDQTR 226 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~-------~---~~~~-~~~l~ell~~aDiV~l~~P~t~~t~ 226 (331)
..++++|||.|.+|+..++.+.. ++. +|.+|+|+..+ . +... ..++++++.++|+|+.|+|.+ .
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~---~ 200 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR---T 200 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---C
Confidence 46799999999999999999864 665 69999998654 1 1111 357889999999999998755 4
Q ss_pred hhccHHHHhcCCCCcEEEEcCCC
Q 020073 227 RMINREVMLALGKEGIIVNVGRG 249 (331)
Q Consensus 227 ~li~~~~l~~mk~ga~lIn~srg 249 (331)
.++.. .+|||+.++.+|.-
T Consensus 201 Pl~~~----~~~~g~hi~~iGs~ 219 (304)
T PRK07340 201 PVYPE----AARAGRLVVAVGAF 219 (304)
T ss_pred ceeCc----cCCCCCEEEecCCC
Confidence 67754 26999999999853
No 177
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.69 E-value=0.00016 Score=68.00 Aligned_cols=135 Identities=16% Similarity=0.189 Sum_probs=90.6
Q ss_pred CccCCCceEEEEe-cChHHHHHHHHHhhC----CCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073 156 GSKLGGKRVGIVG-LGNIGLQVAKRLQAF----GCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMIN 230 (331)
Q Consensus 156 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~~----G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~ 230 (331)
+.++.||++.||| -..+|+.+|..|... ++.|+.+... ..++.+..++||+|++++. ..+++.
T Consensus 156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~--------T~~l~~~~~~ADIvVsAvG----kp~~i~ 223 (297)
T PRK14168 156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR--------SKNLARHCQRADILIVAAG----VPNLVK 223 (297)
T ss_pred CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC--------CcCHHHHHhhCCEEEEecC----CcCccC
Confidence 4578999999999 567899999999876 6888876432 2468999999999999985 335788
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHH
Q 020073 231 REVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCEL 310 (331)
Q Consensus 231 ~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~ 310 (331)
.+. .|+|+++||+|--.+.+. .++|+.. ..-||-.. ...+. --.+||=-||.-.-+..-+.+.
T Consensus 224 ~~~---ik~gavVIDvGin~~~~~------~~~g~~~-~~GDVdfe------~v~~~-a~~iTPVPGGVGp~T~a~L~~N 286 (297)
T PRK14168 224 PEW---IKPGATVIDVGVNRVGTN------ESTGKAI-LSGDVDFD------AVKEI-AGKITPVPGGVGPMTIAMLMRN 286 (297)
T ss_pred HHH---cCCCCEEEecCCCccCcc------ccCCCcc-eeccccHH------HHHhh-ccEecCCCCCchHHHHHHHHHH
Confidence 877 599999999986543211 1234310 23455311 11111 1258998788776666666666
Q ss_pred HHHHHHHHH
Q 020073 311 AVGNLEALF 319 (331)
Q Consensus 311 ~~~nl~~~~ 319 (331)
+++..++++
T Consensus 287 ~~~a~~~~~ 295 (297)
T PRK14168 287 TLKSAKFHL 295 (297)
T ss_pred HHHHHHHHh
Confidence 665555554
No 178
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.68 E-value=0.00016 Score=70.18 Aligned_cols=91 Identities=16% Similarity=0.228 Sum_probs=65.1
Q ss_pred ceEEEEecChHHHHHHHHHhhCC-------CEEEEECCCCC---------------C----CC------ccccCCHHhhh
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFG-------CNVLYNSRSKK---------------P----VP------YAFYSNVCELA 209 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G-------~~V~~~~~~~~---------------~----~~------~~~~~~l~ell 209 (331)
++|+|||.|..|.++|..+...| .+|..|.|... . .+ .....++.+++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav 91 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV 91 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence 58999999999999999998665 78888877653 0 01 12245788999
Q ss_pred cCCCEEEEeccCChhhhhhccHHHHh--cCCCCcEEEEcCCCCccCH
Q 020073 210 ANSDALIICCALTDQTRRMINREVML--ALGKEGIIVNVGRGAVIDE 254 (331)
Q Consensus 210 ~~aDiV~l~~P~t~~t~~li~~~~l~--~mk~ga~lIn~srg~~vd~ 254 (331)
+.||+|++++|. ...+.++ ++.-. .+++++.+|+++-|=-.+.
T Consensus 92 ~~aDiIvlAVPs-q~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~~t 136 (365)
T PTZ00345 92 EDADLLIFVIPH-QFLESVL-SQIKENNNLKKHARAISLTKGIIVEN 136 (365)
T ss_pred hcCCEEEEEcCh-HHHHHHH-HHhccccccCCCCEEEEEeCCcccCC
Confidence 999999999994 3445444 22222 4566789999988754443
No 179
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.68 E-value=0.00017 Score=67.94 Aligned_cols=127 Identities=17% Similarity=0.215 Sum_probs=84.1
Q ss_pred ccCCCceEEEEec-ChHHHHHHHHHhh----CCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073 157 SKLGGKRVGIVGL-GNIGLQVAKRLQA----FGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINR 231 (331)
Q Consensus 157 ~~l~g~~vgIiG~-G~IG~~~A~~l~~----~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~ 231 (331)
.++.||++.|||- ..+|+.+|..|.. .|..|..+... ..++.+.+++||+|+.+++.. ++|..
T Consensus 155 i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~--------t~~l~~~~~~ADIvI~Avg~~----~li~~ 222 (295)
T PRK14174 155 IETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSA--------TKDIPSYTRQADILIAAIGKA----RFITA 222 (295)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCC--------chhHHHHHHhCCEEEEecCcc----CccCH
Confidence 4689999999995 5679999999976 57888776542 246899999999999998532 68998
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC-CceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHH
Q 020073 232 EVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG-EIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCEL 310 (331)
Q Consensus 232 ~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~-~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~ 310 (331)
+++ |+|+++||+|-..+.+. .=++| ++ .-||-..+ .... --.+||=-||.-.-+..-+.+.
T Consensus 223 ~~v---k~GavVIDVgi~~~~~~-----~~~~g~kl---~GDVd~~~------v~~~-a~~iTPVPGGVGp~T~a~L~~N 284 (295)
T PRK14174 223 DMV---KPGAVVIDVGINRIEDP-----STKSGYRL---VGDVDYEG------VSAK-ASAITPVPGGVGPMTIAMLLKN 284 (295)
T ss_pred HHc---CCCCEEEEeeccccccc-----cccCCCce---ECCcCHHH------HHhh-ccEecCCCCCchHHHHHHHHHH
Confidence 886 99999999985442110 00113 33 45653211 1111 1258998777665444444444
Q ss_pred HHH
Q 020073 311 AVG 313 (331)
Q Consensus 311 ~~~ 313 (331)
+++
T Consensus 285 l~~ 287 (295)
T PRK14174 285 TLQ 287 (295)
T ss_pred HHH
Confidence 443
No 180
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.68 E-value=0.00095 Score=63.44 Aligned_cols=107 Identities=19% Similarity=0.199 Sum_probs=72.9
Q ss_pred CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC----CCcc--------------ccCCHHhhhcCCCEEEEeccCC
Q 020073 161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP----VPYA--------------FYSNVCELAANSDALIICCALT 222 (331)
Q Consensus 161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----~~~~--------------~~~~l~ell~~aDiV~l~~P~t 222 (331)
.++|+|||.|.||..+|..|...|.+|.++.|+... .+.. ...+. +.+..+|+|++|++..
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK~~ 83 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLKTT 83 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEecCC
Confidence 358999999999999999999999999988886522 1100 01122 2467899999999854
Q ss_pred hhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEe
Q 020073 223 DQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGL 271 (331)
Q Consensus 223 ~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~l 271 (331)
++...+ +..-..+++++.++...-| +-.++.+.+.+...++.++..
T Consensus 84 -~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~~ 129 (313)
T PRK06249 84 -ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGLC 129 (313)
T ss_pred -ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEee
Confidence 333333 2333446778888877555 456777888887777665533
No 181
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.67 E-value=0.00018 Score=67.52 Aligned_cols=128 Identities=16% Similarity=0.200 Sum_probs=84.0
Q ss_pred CccCCCceEEEEec-ChHHHHHHHHHhhC----CCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073 156 GSKLGGKRVGIVGL-GNIGLQVAKRLQAF----GCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMIN 230 (331)
Q Consensus 156 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~----G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~ 230 (331)
+.++.||++.|||- ..+|+.+|..|... ++.|+.+... ..++.+..++||+|+++++- .++|.
T Consensus 152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~--------T~nl~~~~~~ADIvIsAvGk----p~~i~ 219 (293)
T PRK14185 152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR--------SKNLKKECLEADIIIAALGQ----PEFVK 219 (293)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC--------CCCHHHHHhhCCEEEEccCC----cCccC
Confidence 34689999999995 56799999999876 6888876432 24799999999999999863 35788
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC-CceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHH
Q 020073 231 REVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG-EIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCE 309 (331)
Q Consensus 231 ~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~-~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~ 309 (331)
.++ .|+|+++||+|--.+.+. .=++| + ..-||-..+-. ..--.+||=-||.-.-+..-+.+
T Consensus 220 ~~~---vk~gavVIDvGin~~~~~-----~~~~g~k---lvGDVdf~~v~-------~~a~~iTPVPGGVGp~T~a~L~~ 281 (293)
T PRK14185 220 ADM---VKEGAVVIDVGTTRVPDA-----TRKSGFK---LTGDVKFDEVA-------PKCSYITPVPGGVGPMTIVSLMK 281 (293)
T ss_pred HHH---cCCCCEEEEecCcccccc-----cccCCCe---eEcCCCHHHHH-------hhccEeCCCCCCchHHHHHHHHH
Confidence 766 599999999985442210 00113 3 34566321110 01125899878866544444444
Q ss_pred HHHH
Q 020073 310 LAVG 313 (331)
Q Consensus 310 ~~~~ 313 (331)
.+++
T Consensus 282 N~~~ 285 (293)
T PRK14185 282 NTLL 285 (293)
T ss_pred HHHH
Confidence 4433
No 182
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.67 E-value=0.00062 Score=63.26 Aligned_cols=126 Identities=21% Similarity=0.290 Sum_probs=91.0
Q ss_pred CccCCCceEEEEecChH-HHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073 156 GSKLGGKRVGIVGLGNI-GLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 156 ~~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
+.+++|+++.|||-++| |+.+|..|...++.|.++... ..++.+..++||+|++++- -.+++.++.
T Consensus 151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~--------T~~l~~~~k~ADIvv~AvG----~p~~i~~d~- 217 (283)
T COG0190 151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSR--------TKDLASITKNADIVVVAVG----KPHFIKADM- 217 (283)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCC--------CCCHHHHhhhCCEEEEecC----Ccccccccc-
Confidence 44799999999998875 899999999999999987643 2579999999999999974 346777655
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN 314 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n 314 (331)
.|+|+++|+++--.+-+ +++ .-||-..+ +....-.+||=-||.-.-+..-+.+.+++-
T Consensus 218 --vk~gavVIDVGinrv~~----------~kl---~GDVdf~~-------v~~~a~~iTPVPGGVGPmTvamLl~Nt~~a 275 (283)
T COG0190 218 --VKPGAVVIDVGINRVND----------GKL---VGDVDFDS-------VKEKASAITPVPGGVGPMTVAMLLENTLKA 275 (283)
T ss_pred --ccCCCEEEecCCccccC----------Cce---EeeccHHH-------HHHhhcccCCCCCccCHHHHHHHHHHHHHH
Confidence 69999999998555333 555 45663322 222344689988887776555555444443
Q ss_pred HH
Q 020073 315 LE 316 (331)
Q Consensus 315 l~ 316 (331)
.+
T Consensus 276 ~~ 277 (283)
T COG0190 276 AE 277 (283)
T ss_pred HH
Confidence 33
No 183
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.67 E-value=0.00025 Score=65.99 Aligned_cols=103 Identities=16% Similarity=0.077 Sum_probs=71.2
Q ss_pred CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------C---CccccCCHHh-hhcCCCEEEEeccCC--hhh
Q 020073 159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------V---PYAFYSNVCE-LAANSDALIICCALT--DQT 225 (331)
Q Consensus 159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~---~~~~~~~l~e-ll~~aDiV~l~~P~t--~~t 225 (331)
..+++++|+|.|.+|++++..+...|.+|.+++|+.++ . +.....++++ ...++|+|+.++|.. +..
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence 45789999999999999999999999999999987643 0 1111223444 346799999999975 222
Q ss_pred hh-hccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 020073 226 RR-MINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEI 266 (331)
Q Consensus 226 ~~-li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i 266 (331)
.. .++. +.++++.+++++.-..... .|.+..++..+
T Consensus 195 ~~~~~~~---~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~ 231 (270)
T TIGR00507 195 DEPPVPA---EKLKEGMVVYDMVYNPGET--PFLAEAKSLGT 231 (270)
T ss_pred CCCCCCH---HHcCCCCEEEEeccCCCCC--HHHHHHHHCCC
Confidence 11 2232 3478899999998766533 46666666544
No 184
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.65 E-value=0.00015 Score=67.80 Aligned_cols=78 Identities=22% Similarity=0.339 Sum_probs=64.4
Q ss_pred CccCCCceEEEEec-ChHHHHHHHHHhh----CCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073 156 GSKLGGKRVGIVGL-GNIGLQVAKRLQA----FGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMIN 230 (331)
Q Consensus 156 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~----~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~ 230 (331)
+.++.||++.|||- ..+|+.+|..|.. .|++|..+... ..++.+.+++||+|+.+++ ..++|.
T Consensus 152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~--------t~~l~~~~~~ADIVI~AvG----~p~li~ 219 (286)
T PRK14184 152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSR--------TPDLAEECREADFLFVAIG----RPRFVT 219 (286)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCC--------chhHHHHHHhCCEEEEecC----CCCcCC
Confidence 34689999999995 5679999999987 78998876532 2479999999999999984 356788
Q ss_pred HHHHhcCCCCcEEEEcCC
Q 020073 231 REVMLALGKEGIIVNVGR 248 (331)
Q Consensus 231 ~~~l~~mk~ga~lIn~sr 248 (331)
++++ |+|+++||+|-
T Consensus 220 ~~~v---k~GavVIDVGi 234 (286)
T PRK14184 220 ADMV---KPGAVVVDVGI 234 (286)
T ss_pred HHHc---CCCCEEEEeee
Confidence 8775 99999999983
No 185
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.64 E-value=0.00018 Score=68.90 Aligned_cols=83 Identities=12% Similarity=0.108 Sum_probs=64.4
Q ss_pred CCceEEEEecChHHHHHHHHHh-hCCC-EEEEECCCCCC-------C----Cc--cccCCHHhhhcCCCEEEEeccCChh
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQ-AFGC-NVLYNSRSKKP-------V----PY--AFYSNVCELAANSDALIICCALTDQ 224 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~-~~G~-~V~~~~~~~~~-------~----~~--~~~~~l~ell~~aDiV~l~~P~t~~ 224 (331)
..++++|||.|.+|+..++.+. .++. +|.+|+|+..+ . +. ....++++++++||+|+.|+|.+
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~-- 205 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE-- 205 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence 3578999999999999999987 4675 69999998754 1 11 22467899999999999998754
Q ss_pred hhhhccHHHHhcCCCCcEEEEcCC
Q 020073 225 TRRMINREVMLALGKEGIIVNVGR 248 (331)
Q Consensus 225 t~~li~~~~l~~mk~ga~lIn~sr 248 (331)
..+|..+. +|+|+.+..++.
T Consensus 206 -~p~i~~~~---l~~g~~i~~vg~ 225 (326)
T TIGR02992 206 -TPILHAEW---LEPGQHVTAMGS 225 (326)
T ss_pred -CcEecHHH---cCCCcEEEeeCC
Confidence 46777665 689998887763
No 186
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.63 E-value=0.00029 Score=62.88 Aligned_cols=88 Identities=23% Similarity=0.312 Sum_probs=66.7
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCC---CCC----------C----------------Cc---cc--
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS---KKP----------V----------------PY---AF-- 201 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~---~~~----------~----------------~~---~~-- 201 (331)
..|..++|+|+|+|.+|..+|+.|...|. +++.+|+. ... . +. ..
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 35888999999999999999999999999 68888876 211 0 00 00
Q ss_pred ----cCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEE
Q 020073 202 ----YSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVN 245 (331)
Q Consensus 202 ----~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn 245 (331)
..++.++++++|+|+-| ..+.+++.++.......++...++..
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~ 143 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA 143 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 02345678899999998 57888999988888888877666664
No 187
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.61 E-value=0.00017 Score=69.08 Aligned_cols=82 Identities=17% Similarity=0.143 Sum_probs=63.0
Q ss_pred CCceEEEEecChHHHHHHHHHh-hCCC-EEEEECCCCCC-----C------Cc--cccCCHHhhhcCCCEEEEeccCChh
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQ-AFGC-NVLYNSRSKKP-----V------PY--AFYSNVCELAANSDALIICCALTDQ 224 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~-~~G~-~V~~~~~~~~~-----~------~~--~~~~~l~ell~~aDiV~l~~P~t~~ 224 (331)
..++++|||.|.+|+..++.+. ..+. +|.+++|++++ . +. ..+.+++++++++|+|++|+|..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 4678999999999999988764 4566 68899998654 0 11 23567899999999999998855
Q ss_pred hhhhccHHHHhcCCCCcEEEEcCC
Q 020073 225 TRRMINREVMLALGKEGIIVNVGR 248 (331)
Q Consensus 225 t~~li~~~~l~~mk~ga~lIn~sr 248 (331)
..++. + .+|+|+.++.++.
T Consensus 204 -~p~i~-~---~l~~G~hV~~iGs 222 (325)
T PRK08618 204 -TPVFS-E---KLKKGVHINAVGS 222 (325)
T ss_pred -CcchH-H---hcCCCcEEEecCC
Confidence 45665 4 4699999988865
No 188
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.58 E-value=0.00033 Score=65.97 Aligned_cols=127 Identities=18% Similarity=0.191 Sum_probs=84.6
Q ss_pred CccCCCceEEEEec-ChHHHHHHHHHhhC----CCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073 156 GSKLGGKRVGIVGL-GNIGLQVAKRLQAF----GCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMIN 230 (331)
Q Consensus 156 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~----G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~ 230 (331)
+.++.||++.|||- ..+|+.+|..|... ++.|..+... ..++.+..++||+|++++- ..+++.
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~--------T~~l~~~~~~ADIvIsAvG----kp~~i~ 219 (297)
T PRK14167 152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR--------TDDLAAKTRRADIVVAAAG----VPELID 219 (297)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC--------CCCHHHHHhhCCEEEEccC----CcCccC
Confidence 34689999999995 56799999999865 7888876432 2478999999999999874 235888
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC-CceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHH
Q 020073 231 REVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG-EIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCE 309 (331)
Q Consensus 231 ~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~-~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~ 309 (331)
.++ +|+|+++||+|--.+-+.. ++| ++ .-||-..+- .+. --.+||=-||.-.-+..-+.+
T Consensus 220 ~~~---ik~gaiVIDvGin~~~~~~------~~g~kl---~GDVd~e~v------~~~-a~~iTPVPGGVGpvT~a~L~~ 280 (297)
T PRK14167 220 GSM---LSEGATVIDVGINRVDADT------EKGYEL---VGDVEFESA------KEK-ASAITPVPGGVGPMTRAMLLY 280 (297)
T ss_pred HHH---cCCCCEEEEccccccCccc------ccCCce---eecCcHHHH------Hhh-ceEecCCCCCchHHHHHHHHH
Confidence 866 5999999999954421110 013 33 456642211 111 125899878866655444444
Q ss_pred HHHH
Q 020073 310 LAVG 313 (331)
Q Consensus 310 ~~~~ 313 (331)
.+++
T Consensus 281 N~~~ 284 (297)
T PRK14167 281 NTVK 284 (297)
T ss_pred HHHH
Confidence 4443
No 189
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.57 E-value=0.00074 Score=54.91 Aligned_cols=99 Identities=20% Similarity=0.410 Sum_probs=69.3
Q ss_pred ceEEEEe----cChHHHHHHHHHhhCCCEEEEECCCCCC-CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhc
Q 020073 162 KRVGIVG----LGNIGLQVAKRLQAFGCNVLYNSRSKKP-VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLA 236 (331)
Q Consensus 162 ~~vgIiG----~G~IG~~~A~~l~~~G~~V~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~ 236 (331)
|+++||| -|..|..+.+.|+..|++|+.+++.... .+...+.++.|.-...|++++++|.. .+..++++ +..
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~-~~~~~v~~--~~~ 77 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPD-KVPEIVDE--AAA 77 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HH-HHHHHHHH--HHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHH-HHHHHHHH--HHH
Confidence 5799999 7899999999999999999999987766 56666789998558899999999843 44445532 233
Q ss_pred CCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073 237 LGKEGIIVNVGRGAVIDENEMVRCLVRGEIA 267 (331)
Q Consensus 237 mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ 267 (331)
+..+.+++..+ -.++++.+..++..+.
T Consensus 78 ~g~~~v~~~~g----~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 78 LGVKAVWLQPG----AESEELIEAAREAGIR 104 (116)
T ss_dssp HT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred cCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence 45678888887 6778888888888776
No 190
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=97.56 E-value=0.0006 Score=63.13 Aligned_cols=118 Identities=19% Similarity=0.205 Sum_probs=73.7
Q ss_pred HHHHHhhCC--CEEEEECCCCCC------CCcc--ccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEE
Q 020073 176 VAKRLQAFG--CNVLYNSRSKKP------VPYA--FYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVN 245 (331)
Q Consensus 176 ~A~~l~~~G--~~V~~~~~~~~~------~~~~--~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn 245 (331)
+|+.|+..| .+|+++|+++.. .+.. ...+ .+.++++|+|++|+|.. .+..++ ++....+++|+++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~DlvvlavP~~-~~~~~l-~~~~~~~~~~~iv~D 77 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAVPVS-AIEDVL-EEIAPYLKPGAIVTD 77 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S-HH-HHHHHH-HHHHCGS-TTSEEEE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcCCHH-HHHHHH-HHhhhhcCCCcEEEE
Confidence 577788777 699999988654 2221 1223 57899999999999954 455555 556667999999999
Q ss_pred cCCCCccCHHHHHHHHHhCCceEEEe-ecCCCCCCC----CCccccCCceEEcCCCC
Q 020073 246 VGRGAVIDENEMVRCLVRGEIAGAGL-DVFENEPYV----PKELLELDNVVLQPHRA 297 (331)
Q Consensus 246 ~srg~~vd~~al~~aL~~~~i~ga~l-DV~~~EP~~----~~~L~~~~nvilTPH~a 297 (331)
++.-+.--.+++.+.+.. .....+. =-|.+|-.- ...|++-.++++||+-.
T Consensus 78 v~SvK~~~~~~~~~~~~~-~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~ 133 (258)
T PF02153_consen 78 VGSVKAPIVEAMERLLPE-GVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED 133 (258)
T ss_dssp --S-CHHHHHHHHHHHTS-SGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred eCCCCHHHHHHHHHhcCc-ccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence 999887666666666662 2222222 234444211 23688889999999876
No 191
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.55 E-value=0.00025 Score=67.62 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=63.8
Q ss_pred CceEEEEecChHHHHHHHHHhh-CCC-EEEEECCCCCC----------CC--ccccCCHHhhhcCCCEEEEeccCChhhh
Q 020073 161 GKRVGIVGLGNIGLQVAKRLQA-FGC-NVLYNSRSKKP----------VP--YAFYSNVCELAANSDALIICCALTDQTR 226 (331)
Q Consensus 161 g~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~----------~~--~~~~~~l~ell~~aDiV~l~~P~t~~t~ 226 (331)
-++++|||.|..|+..++.+.. +.. +|.+|+|++++ .+ .....+.++++++||+|+.++| .+.
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~---s~~ 204 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTP---SRE 204 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecC---CCC
Confidence 4689999999999999988764 333 79999998765 01 1224678999999999999866 445
Q ss_pred hhccHHHHhcCCCCcEEEEcCC
Q 020073 227 RMINREVMLALGKEGIIVNVGR 248 (331)
Q Consensus 227 ~li~~~~l~~mk~ga~lIn~sr 248 (331)
.+++.+. +|||+.++.+|.
T Consensus 205 P~~~~~~---l~~G~hi~~iGs 223 (315)
T PRK06823 205 PLLQAED---IQPGTHITAVGA 223 (315)
T ss_pred ceeCHHH---cCCCcEEEecCC
Confidence 7887765 589999998873
No 192
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.53 E-value=0.00014 Score=69.29 Aligned_cols=86 Identities=20% Similarity=0.192 Sum_probs=55.0
Q ss_pred ceEEEEecChHHHHHHHHHhh-CCC-EEEEECCCCCC---------C---CccccCCHHhhhcCCCEEEEeccCChhhhh
Q 020073 162 KRVGIVGLGNIGLQVAKRLQA-FGC-NVLYNSRSKKP---------V---PYAFYSNVCELAANSDALIICCALTDQTRR 227 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~---------~---~~~~~~~l~ell~~aDiV~l~~P~t~~t~~ 227 (331)
++++|||.|..|+.-++.+.. ++. +|.+|+|++.. . ......+.++++++||+|+.|+|.+..+ .
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P 207 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P 207 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence 589999999999999998764 555 79999998753 1 1233568999999999999997765432 6
Q ss_pred hccHHHHhcCCCCcEEEEcCCCCc
Q 020073 228 MINREVMLALGKEGIIVNVGRGAV 251 (331)
Q Consensus 228 li~~~~l~~mk~ga~lIn~srg~~ 251 (331)
+++.+. +++|+.++.++....
T Consensus 208 ~~~~~~---l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 208 VFDAEW---LKPGTHINAIGSYTP 228 (313)
T ss_dssp SB-GGG---S-TT-EEEE-S-SST
T ss_pred cccHHH---cCCCcEEEEecCCCC
Confidence 787654 699999999987543
No 193
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.53 E-value=0.0029 Score=57.61 Aligned_cols=103 Identities=27% Similarity=0.315 Sum_probs=69.9
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------C------------C----c--cccCCHHhh-hcC
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------V------------P----Y--AFYSNVCEL-AAN 211 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~------------~----~--~~~~~l~el-l~~ 211 (331)
.++.|++++|.|+|.+|+.+|+.|..+|++|+++..+... . + + ....+.+++ -.+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~ 106 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELD 106 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeec
Confidence 4588999999999999999999999999999855433111 0 0 0 000122332 246
Q ss_pred CCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073 212 SDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA 267 (331)
Q Consensus 212 aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ 267 (331)
||+++-|.+ .+.|+.+...+++ -.+++-.+-+.+- ....+.|+++.+.
T Consensus 107 ~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~t--~~a~~~L~~rGi~ 154 (227)
T cd01076 107 CDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPTT--PEADEILHERGVL 154 (227)
T ss_pred ccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCCC--HHHHHHHHHCCCE
Confidence 888887764 3467777777786 4567777777774 4555778877775
No 194
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.52 E-value=0.00088 Score=64.82 Aligned_cols=137 Identities=23% Similarity=0.332 Sum_probs=90.2
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCc---------------------cccCCHHhhhcCCCEE
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPY---------------------AFYSNVCELAANSDAL 215 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~---------------------~~~~~l~ell~~aDiV 215 (331)
.+|||||+|-||-.+|-.+...|++|+++|.+... .+. +...+. +.++.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~-~~l~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDP-EELKECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecCh-hhcccCCEE
Confidence 79999999999999999999999999999987643 000 011222 344599999
Q ss_pred EEeccCChhhh-------hhcc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC--CceEEEeecC---CCCCCCC
Q 020073 216 IICCALTDQTR-------RMIN--REVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG--EIAGAGLDVF---ENEPYVP 281 (331)
Q Consensus 216 ~l~~P~t~~t~-------~li~--~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~--~i~ga~lDV~---~~EP~~~ 281 (331)
++|+| ||-+. .+.+ +..-..||+|.++|==|.-..=..+.++.-|.+. .+. ..-|.| .+|-..+
T Consensus 89 iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~P 166 (436)
T COG0677 89 IICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLP 166 (436)
T ss_pred EEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCC
Confidence 99998 33222 2222 2344558999988877776666667776666653 232 345654 4554222
Q ss_pred -C---ccccCCceEEcCCCCCCcHHHHHH
Q 020073 282 -K---ELLELDNVVLQPHRAVFTSECFVD 306 (331)
Q Consensus 282 -~---~L~~~~nvilTPH~a~~t~~~~~~ 306 (331)
+ ++...|+| +||.|....+.
T Consensus 167 G~~~~el~~~~kV-----IgG~tp~~~e~ 190 (436)
T COG0677 167 GNVLKELVNNPKV-----IGGVTPKCAEL 190 (436)
T ss_pred CchhhhhhcCCce-----eecCCHHHHHH
Confidence 2 46667777 68888765443
No 195
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.52 E-value=0.0024 Score=64.26 Aligned_cols=128 Identities=15% Similarity=0.190 Sum_probs=85.3
Q ss_pred ceEEEEecChHHHHHHHHHhhC--CCEEEEECCCCCC-----CC--------------------ccccCCHHhhhcCCCE
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAF--GCNVLYNSRSKKP-----VP--------------------YAFYSNVCELAANSDA 214 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~~~~~~~-----~~--------------------~~~~~~l~ell~~aDi 214 (331)
++|+|||+|.+|..+|..|... |++|+++|..+.. .+ .....+..+.+++||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 5799999999999999999866 6889999976543 00 1122356778899999
Q ss_pred EEEeccCCh-----------hhhhhc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEee---cCCCCC
Q 020073 215 LIICCALTD-----------QTRRMI--NREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLD---VFENEP 278 (331)
Q Consensus 215 V~l~~P~t~-----------~t~~li--~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lD---V~~~EP 278 (331)
+++|+|... ....+. -++.-..+++|.++|.-|.-.+=-.+.+...|.+.. . +.| +|-+|=
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~--g~~f~v~~~PEr 158 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-K--GINFQILSNPEF 158 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-C--CCCeEEEECCCc
Confidence 999996321 111222 233455578999999888866666667777777631 1 123 245565
Q ss_pred CCC----CccccCCceEE
Q 020073 279 YVP----KELLELDNVVL 292 (331)
Q Consensus 279 ~~~----~~L~~~~nvil 292 (331)
+.+ ..+...|+|++
T Consensus 159 l~~G~a~~d~~~p~riVi 176 (473)
T PLN02353 159 LAEGTAIEDLFKPDRVLI 176 (473)
T ss_pred cCCCCcccccCCCCEEEE
Confidence 433 25777888874
No 196
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.52 E-value=0.002 Score=61.48 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=120.5
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----------CCccccCCHHhh---hcCCCEEEEeccCChhhhh
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------VPYAFYSNVCEL---AANSDALIICCALTDQTRR 227 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------~~~~~~~~l~el---l~~aDiV~l~~P~t~~t~~ 227 (331)
..+|+||++.|||.++-.....|+.|.+|+|+..+ .......|++++ ++....|++.+-.......
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 46899999999999999999999999999998765 112234567775 5778889988877777777
Q ss_pred hccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHH
Q 020073 228 MINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDL 307 (331)
Q Consensus 228 li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~ 307 (331)
+| ++....|.+|-++|+-+-..--|...-.+.|.+..|-..+.-|...|--... -|. + +-|.+.+++.++
T Consensus 87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~----GPS--l---MpGg~~~Awp~i 156 (487)
T KOG2653|consen 87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARY----GPS--L---MPGGSKEAWPHI 156 (487)
T ss_pred HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCccccccc----CCc--c---CCCCChHHHHHH
Confidence 77 6677889999999999999999999999999999988899999988864221 011 1 336677888887
Q ss_pred HHHHHHHHHHHHcCCCCCCCC
Q 020073 308 CELAVGNLEALFSNQPLLSPV 328 (331)
Q Consensus 308 ~~~~~~nl~~~~~g~~~~~~v 328 (331)
-.++..-....-.|+|....|
T Consensus 157 k~ifq~iaakv~~~epCc~wv 177 (487)
T KOG2653|consen 157 KDIFQKIAAKVSDGEPCCDWV 177 (487)
T ss_pred HHHHHHHHHHhcCCCCCeeee
Confidence 777655444444677765544
No 197
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.51 E-value=0.0004 Score=66.96 Aligned_cols=86 Identities=21% Similarity=0.229 Sum_probs=62.1
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------------C--Cc------cccCCHHhhhcCCCEEEEecc
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------------V--PY------AFYSNVCELAANSDALIICCA 220 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------------~--~~------~~~~~l~ell~~aDiV~l~~P 220 (331)
.+|+|||.|.+|..+|..|...| +|..|.++++. . +. ....++.+.++.+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 57999999999999999999888 56666554211 1 11 123577888999999999999
Q ss_pred CChhhhhhccHHHHhcCCCCcEEEEcCCCC
Q 020073 221 LTDQTRRMINREVMLALGKEGIIVNVGRGA 250 (331)
Q Consensus 221 ~t~~t~~li~~~~l~~mk~ga~lIn~srg~ 250 (331)
+..++..+ ++.-..++++..+|++.-|=
T Consensus 87 -s~~~~~vl-~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 87 -SHGFRGVL-TELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred -HHHHHHHH-HHHHhhcCCCCEEEEEEeCC
Confidence 33455554 33344578888889888764
No 198
>PRK06046 alanine dehydrogenase; Validated
Probab=97.48 E-value=0.00036 Score=66.88 Aligned_cols=81 Identities=22% Similarity=0.299 Sum_probs=62.0
Q ss_pred CceEEEEecChHHHHHHHHHhh-CCC-EEEEECCCCCC-------C----C--ccccCCHHhhhcCCCEEEEeccCChhh
Q 020073 161 GKRVGIVGLGNIGLQVAKRLQA-FGC-NVLYNSRSKKP-------V----P--YAFYSNVCELAANSDALIICCALTDQT 225 (331)
Q Consensus 161 g~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~-------~----~--~~~~~~l~ell~~aDiV~l~~P~t~~t 225 (331)
-+++||||+|.+|+..++.+.. .+. +|.+++|+... . + .....+++++++ +|+|++|+|.+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--- 204 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--- 204 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence 3689999999999999998874 455 57789998654 1 1 123567899887 99999998864
Q ss_pred hhhccHHHHhcCCCCcEEEEcCC
Q 020073 226 RRMINREVMLALGKEGIIVNVGR 248 (331)
Q Consensus 226 ~~li~~~~l~~mk~ga~lIn~sr 248 (331)
..++..+. +|+|+.+..+|.
T Consensus 205 ~P~~~~~~---l~~g~hV~~iGs 224 (326)
T PRK06046 205 KPVVKAEW---IKEGTHINAIGA 224 (326)
T ss_pred CcEecHHH---cCCCCEEEecCC
Confidence 46787765 589999888873
No 199
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.48 E-value=0.00074 Score=71.31 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=80.4
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----------------CC-------------ccccCCHHhhhcC
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------------VP-------------YAFYSNVCELAAN 211 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------------~~-------------~~~~~~l~ell~~ 211 (331)
++|+|||.|.||..+|..+...|++|+.+|++.+. .+ .....++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 68999999999999999999999999999987642 00 0112345 45799
Q ss_pred CCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCC
Q 020073 212 SDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFE 275 (331)
Q Consensus 212 aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~ 275 (331)
||+|+=++|-+.+.+.-+-++.=+.++++++|-..+++ +.-..|.+++.. .-+.+++--|.
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~-p~r~~g~Hff~ 453 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKR-PENFCGMHFFN 453 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCC-CccEEEEecCC
Confidence 99999999999888887767766778999887654433 455666676643 33345665554
No 200
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.47 E-value=0.00051 Score=65.55 Aligned_cols=86 Identities=21% Similarity=0.310 Sum_probs=60.8
Q ss_pred eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------------C-C------ccccCCHHhhh-cCCCEEEEeccC
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------------V-P------YAFYSNVCELA-ANSDALIICCAL 221 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------------~-~------~~~~~~l~ell-~~aDiV~l~~P~ 221 (331)
+|+|||.|.||..+|..|...|.+|.+|+|+.+. . + .....++.+.+ ..+|+|++++|.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks 81 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT 81 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence 6999999999999999999999999999986421 0 0 11224566766 589999999984
Q ss_pred ChhhhhhccHHHHh-cCCCCcEEEEcCCCC
Q 020073 222 TDQTRRMINREVML-ALGKEGIIVNVGRGA 250 (331)
Q Consensus 222 t~~t~~li~~~~l~-~mk~ga~lIn~srg~ 250 (331)
. .+...+. +... .+++...+|...-|-
T Consensus 82 ~-~~~~~l~-~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 82 Q-QLRTICQ-QLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred H-HHHHHHH-HHHHhcCCCCCEEEEEEcCe
Confidence 3 4555442 2333 566777677666664
No 201
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.47 E-value=0.00039 Score=65.33 Aligned_cols=64 Identities=22% Similarity=0.241 Sum_probs=50.4
Q ss_pred CCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-------C----C-c--cccCCHHhhhcCCCEEEEeccCC
Q 020073 159 LGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-------V----P-Y--AFYSNVCELAANSDALIICCALT 222 (331)
Q Consensus 159 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------~----~-~--~~~~~l~ell~~aDiV~l~~P~t 222 (331)
+.++++.|||.|.+|++++..|...|+ +|++++|+..+ . . . ....++.+.++++|+|+.++|..
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 567899999999999999999999998 79999998654 0 0 0 11234556778899999998864
No 202
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.46 E-value=0.0003 Score=67.46 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=60.9
Q ss_pred CCceEEEEecChHHHHHHHHHhh-CCC-EEEEECCCCCC-------C----Cc--cccCCHHhhhcCCCEEEEeccCChh
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQA-FGC-NVLYNSRSKKP-------V----PY--AFYSNVCELAANSDALIICCALTDQ 224 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~-------~----~~--~~~~~l~ell~~aDiV~l~~P~t~~ 224 (331)
..++++|||.|.+|+..+..+.. .+. +|.+|+|+.++ . +. ....++++++.+||+|++++|..
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~-- 208 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE-- 208 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence 35789999999999999988874 554 78999998654 0 11 22468899999999999998754
Q ss_pred hhhhccHHHHhcCCCCcEEEEc
Q 020073 225 TRRMINREVMLALGKEGIIVNV 246 (331)
Q Consensus 225 t~~li~~~~l~~mk~ga~lIn~ 246 (331)
..++..+. +++|+.+..+
T Consensus 209 -~p~i~~~~---l~~g~~v~~v 226 (330)
T PRK08291 209 -EPILKAEW---LHPGLHVTAM 226 (330)
T ss_pred -CcEecHHH---cCCCceEEee
Confidence 45776655 5788766654
No 203
>PRK06444 prephenate dehydrogenase; Provisional
Probab=97.44 E-value=0.00046 Score=61.43 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=48.1
Q ss_pred eEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCc
Q 020073 163 RVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEG 241 (331)
Q Consensus 163 ~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga 241 (331)
+++|||. |.||+.+++.++..|+.|. +++||+|++|+|-. .+..++. .+. .
T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------~~~~DlVilavPv~-~~~~~i~-----~~~--~ 53 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVY--------------------IKKADHAFLSVPID-AALNYIE-----SYD--N 53 (197)
T ss_pred EEEEEecCCcHHHHHHHHHHhCCCEEE--------------------ECCCCEEEEeCCHH-HHHHHHH-----HhC--C
Confidence 7999997 9999999999999999885 36899999999955 3444442 222 3
Q ss_pred EEEEcCCCCc
Q 020073 242 IIVNVGRGAV 251 (331)
Q Consensus 242 ~lIn~srg~~ 251 (331)
+++++++-+-
T Consensus 54 ~v~Dv~SvK~ 63 (197)
T PRK06444 54 NFVEISSVKW 63 (197)
T ss_pred eEEeccccCH
Confidence 7899988664
No 204
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.44 E-value=0.00047 Score=66.00 Aligned_cols=81 Identities=17% Similarity=0.189 Sum_probs=66.1
Q ss_pred ceEEEEecChHHHHHHHHHhh-CCC-EEEEECCCCCC----------C-C--ccccCCHHhhhcCCCEEEEeccCChhhh
Q 020073 162 KRVGIVGLGNIGLQVAKRLQA-FGC-NVLYNSRSKKP----------V-P--YAFYSNVCELAANSDALIICCALTDQTR 226 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~----------~-~--~~~~~~l~ell~~aDiV~l~~P~t~~t~ 226 (331)
++++|||.|..++.-++.++. ++. +|.+|+|+++. . + .....+.+++++.||+|+.|+|.++
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~--- 207 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE--- 207 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC---
Confidence 589999999999999998875 555 79999998764 1 1 2346789999999999999987664
Q ss_pred hhccHHHHhcCCCCcEEEEcCC
Q 020073 227 RMINREVMLALGKEGIIVNVGR 248 (331)
Q Consensus 227 ~li~~~~l~~mk~ga~lIn~sr 248 (331)
.++..+. +|||+.+..++.
T Consensus 208 Pil~~~~---l~~G~hI~aiGa 226 (330)
T COG2423 208 PVLKAEW---LKPGTHINAIGA 226 (330)
T ss_pred CeecHhh---cCCCcEEEecCC
Confidence 7887776 579999999984
No 205
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.40 E-value=0.0005 Score=67.03 Aligned_cols=83 Identities=19% Similarity=0.201 Sum_probs=60.8
Q ss_pred ceEEEEecChHHHHHHHHHhhCC-CEEEEECCCCCC------C----------CccccCCHHhhhcCCCEEEEeccCChh
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFG-CNVLYNSRSKKP------V----------PYAFYSNVCELAANSDALIICCALTDQ 224 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~------~----------~~~~~~~l~ell~~aDiV~l~~P~t~~ 224 (331)
+++.|||+|.||+.+|+.|...| .+|++.+|+..+ . +......+.+++++.|+|+.++|..-.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~ 81 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD 81 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence 67999999999999999999888 899999998654 0 111124678889999999999885522
Q ss_pred hhhhccHHHH-hcCCCCcEEEEcCCCC
Q 020073 225 TRRMINREVM-LALGKEGIIVNVGRGA 250 (331)
Q Consensus 225 t~~li~~~~l-~~mk~ga~lIn~srg~ 250 (331)
...+ +.++.|.-.+++|-..
T Consensus 82 ------~~i~ka~i~~gv~yvDts~~~ 102 (389)
T COG1748 82 ------LTILKACIKTGVDYVDTSYYE 102 (389)
T ss_pred ------HHHHHHHHHhCCCEEEcccCC
Confidence 2223 2346677777777544
No 206
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.39 E-value=0.00061 Score=68.62 Aligned_cols=68 Identities=24% Similarity=0.262 Sum_probs=50.8
Q ss_pred CccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-C----Cc-cccCCHHhh--hcCCCEEEEeccCCh
Q 020073 156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-V----PY-AFYSNVCEL--AANSDALIICCALTD 223 (331)
Q Consensus 156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-~----~~-~~~~~l~el--l~~aDiV~l~~P~t~ 223 (331)
+.++.+++++|+|.|.+|++++..+...|++|.+++|+..+ . .. ....+++++ +.++|+|++|+|...
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~ 402 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSV 402 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCC
Confidence 44678999999999999999999999999999999987543 0 00 011122222 578999999998763
No 207
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.38 E-value=0.00012 Score=58.20 Aligned_cols=84 Identities=25% Similarity=0.285 Sum_probs=55.8
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC--C--CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHH
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK--P--VPYAFYSNVCELAANSDALIICCALTDQTRRMINREV 233 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~--~--~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~ 233 (331)
+++|+++.|||.|.+|..-++.|...|++|+++++... + ... ....+++.+..+|+|+.+++. ++ +++..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~-~~~~~~~~l~~~~lV~~at~d-~~----~n~~i 77 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQL-IRREFEEDLDGADLVFAATDD-PE----LNEAI 77 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEE-EESS-GGGCTTESEEEE-SS--HH----HHHHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHH-HhhhHHHHHhhheEEEecCCC-HH----HHHHH
Confidence 58899999999999999999999999999999988731 1 111 123445678889999987653 33 23333
Q ss_pred HhcCCCCcEEEEcC
Q 020073 234 MLALGKEGIIVNVG 247 (331)
Q Consensus 234 l~~mk~ga~lIn~s 247 (331)
....+.-.+++|++
T Consensus 78 ~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 78 YADARARGILVNVV 91 (103)
T ss_dssp HHHHHHTTSEEEET
T ss_pred HHHHhhCCEEEEEC
Confidence 44445455777775
No 208
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.38 E-value=0.00051 Score=67.19 Aligned_cols=85 Identities=19% Similarity=0.284 Sum_probs=65.3
Q ss_pred CceEEEEecChHHHHHHHHHhh-CC-C-EEEEECCCCCC-----------C-C---ccccCCHHhhhcCCCEEEEeccCC
Q 020073 161 GKRVGIVGLGNIGLQVAKRLQA-FG-C-NVLYNSRSKKP-----------V-P---YAFYSNVCELAANSDALIICCALT 222 (331)
Q Consensus 161 g~~vgIiG~G~IG~~~A~~l~~-~G-~-~V~~~~~~~~~-----------~-~---~~~~~~l~ell~~aDiV~l~~P~t 222 (331)
-++++|||.|..++..++.+.. +. . +|.+|+|++.+ . + .....+.++++++||+|+.|++.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 4689999999999999998875 42 4 79999998754 1 1 223478999999999999998754
Q ss_pred h---hhhhhccHHHHhcCCCCcEEEEcCC
Q 020073 223 D---QTRRMINREVMLALGKEGIIVNVGR 248 (331)
Q Consensus 223 ~---~t~~li~~~~l~~mk~ga~lIn~sr 248 (331)
. .+..++..+. +|+|+.++.++.
T Consensus 235 ~~~~s~~Pv~~~~~---lkpG~hv~~ig~ 260 (379)
T PRK06199 235 TGDPSTYPYVKREW---VKPGAFLLMPAA 260 (379)
T ss_pred CCCCCcCcEecHHH---cCCCcEEecCCc
Confidence 3 3457887765 589998877665
No 209
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.36 E-value=0.00059 Score=64.70 Aligned_cols=82 Identities=16% Similarity=0.140 Sum_probs=62.9
Q ss_pred CceEEEEecChHHHHHHHHHhh-CCC-EEEEECCCCCC-----------CC--ccccCCHHhhhcCCCEEEEeccCChhh
Q 020073 161 GKRVGIVGLGNIGLQVAKRLQA-FGC-NVLYNSRSKKP-----------VP--YAFYSNVCELAANSDALIICCALTDQT 225 (331)
Q Consensus 161 g~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~-----------~~--~~~~~~l~ell~~aDiV~l~~P~t~~t 225 (331)
-+++||||.|..|+..++.+.. +.. +|.+|+|++.+ .+ .....++++++++||+|+.++|. +
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s---~ 193 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNS---D 193 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCC---C
Confidence 4789999999999998888765 444 79999998764 01 22346899999999999998764 4
Q ss_pred hhhccHHHHhcCCCCcEEEEcCC
Q 020073 226 RRMINREVMLALGKEGIIVNVGR 248 (331)
Q Consensus 226 ~~li~~~~l~~mk~ga~lIn~sr 248 (331)
..+++.+. +|||+.+.-++.
T Consensus 194 ~P~~~~~~---l~pg~hV~aiGs 213 (301)
T PRK06407 194 TPIFNRKY---LGDEYHVNLAGS 213 (301)
T ss_pred CcEecHHH---cCCCceEEecCC
Confidence 57887765 578987776654
No 210
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.32 E-value=0.00043 Score=61.96 Aligned_cols=89 Identities=22% Similarity=0.307 Sum_probs=57.4
Q ss_pred CCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CC-cccc-CC-HHhhhcCCCEEEEeccCCh
Q 020073 154 PLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VP-YAFY-SN-VCELAANSDALIICCALTD 223 (331)
Q Consensus 154 ~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~-~~~~-~~-l~ell~~aDiV~l~~P~t~ 223 (331)
|..-++.|+++.|||.|.+|..-++.|..+|++|+++++...+ .+ .... .+ -.+.+..+|+|+.+.. ++
T Consensus 2 P~~l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~-d~ 80 (205)
T TIGR01470 2 PVFANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATD-DE 80 (205)
T ss_pred CeEEEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCC-CH
Confidence 3445789999999999999999999999999999999886543 01 1110 01 1345677887776643 33
Q ss_pred hhhhhccHHHHhcCCCCcEEEEcC
Q 020073 224 QTRRMINREVMLALGKEGIIVNVG 247 (331)
Q Consensus 224 ~t~~li~~~~l~~mk~ga~lIn~s 247 (331)
+ +|.......+.-.++||+.
T Consensus 81 ~----ln~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 81 E----LNRRVAHAARARGVPVNVV 100 (205)
T ss_pred H----HHHHHHHHHHHcCCEEEEC
Confidence 2 2233333344445666653
No 211
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.30 E-value=0.00072 Score=64.47 Aligned_cols=101 Identities=20% Similarity=0.271 Sum_probs=65.8
Q ss_pred ceEEEEecChHHHHHHHHHhhC-CCEEEE-ECCCC-CC----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAF-GCNVLY-NSRSK-KP----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~~-~~~~~-~~----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
.+|||||+|+||+.+++.+... ++++++ ++++. .. .+.....+.++++.+.|+|++|+|....- ....
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th~-----~~~~ 78 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATDI-----PEQA 78 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccCH-----HHHH
Confidence 5899999999999999999765 788875 67774 22 22223356778889999999999865331 2333
Q ss_pred hcCCCCcEEEEcCCC--CccCHHHHHHHHHh--CCce
Q 020073 235 LALGKEGIIVNVGRG--AVIDENEMVRCLVR--GEIA 267 (331)
Q Consensus 235 ~~mk~ga~lIn~srg--~~vd~~al~~aL~~--~~i~ 267 (331)
..++.|.-+|+..-- .+-+..+.+++... |+..
T Consensus 79 ~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs 115 (324)
T TIGR01921 79 PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS 115 (324)
T ss_pred HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 446777777777432 12233444444443 5554
No 212
>PLN02477 glutamate dehydrogenase
Probab=97.30 E-value=0.0045 Score=61.08 Aligned_cols=104 Identities=18% Similarity=0.250 Sum_probs=72.7
Q ss_pred CccCCCceEEEEecChHHHHHHHHHhhCCCEEEE-ECCCCC---C--C-------------Ccc-----ccCCHHhh-hc
Q 020073 156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY-NSRSKK---P--V-------------PYA-----FYSNVCEL-AA 210 (331)
Q Consensus 156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~-~~~~~~---~--~-------------~~~-----~~~~l~el-l~ 210 (331)
|.++.|++|.|.|+|++|+.+|+.|...|++|++ .|.+.. + . ... ...+.+++ ..
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~ 280 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE 280 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence 4468999999999999999999999999999984 444311 0 0 000 00122332 34
Q ss_pred CCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073 211 NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA 267 (331)
Q Consensus 211 ~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ 267 (331)
.||+++-|. ..+.|+++...+++ -.+++-.+-+.+ ..+ ..+.|+++.|.
T Consensus 281 ~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~e-a~~~L~~rGI~ 329 (410)
T PLN02477 281 PCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPE-ADEILRKKGVV 329 (410)
T ss_pred cccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHH-HHHHHHHCCcE
Confidence 789888763 56678888888885 457888888988 433 45778888775
No 213
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.30 E-value=0.0015 Score=62.48 Aligned_cols=113 Identities=19% Similarity=0.199 Sum_probs=69.7
Q ss_pred CCCceEEEEecChHHHHHHHHHhhCC-CEEEEECCCCCC--------------CC--cc--ccCCHHhhhcCCCEEEEec
Q 020073 159 LGGKRVGIVGLGNIGLQVAKRLQAFG-CNVLYNSRSKKP--------------VP--YA--FYSNVCELAANSDALIICC 219 (331)
Q Consensus 159 l~g~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~--------------~~--~~--~~~~l~ell~~aDiV~l~~ 219 (331)
+..++|+|||.|.+|..+|..+...| .+|..+|.+.+. .+ .. ...+.+ .+++||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 35679999999999999999988777 689999986642 00 01 123555 789999999998
Q ss_pred --cCChh-hh--------hhc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH--hCCceEEE--ee
Q 020073 220 --ALTDQ-TR--------RMI--NREVMLALGKEGIIVNVGRGAVIDENEMVRCLV--RGEIAGAG--LD 272 (331)
Q Consensus 220 --P~t~~-t~--------~li--~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~--~~~i~ga~--lD 272 (331)
|..+. ++ .++ -.+.+....|.+++|+++-..=+-...+.+... ..++.|.+ ||
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld 151 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD 151 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence 44330 10 111 022333446788899986433222333333321 34566555 55
No 214
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.30 E-value=0.0027 Score=57.38 Aligned_cols=103 Identities=24% Similarity=0.268 Sum_probs=70.1
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCCEEEE-ECCCC----------CC-------CCcccc-----CCHHhhh-cCC
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY-NSRSK----------KP-------VPYAFY-----SNVCELA-ANS 212 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~-~~~~~----------~~-------~~~~~~-----~~l~ell-~~a 212 (331)
.++.|+++.|.|+|++|+.+|+.|...|.+|++ .|.+. +. .....+ .+-++++ .+|
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV 98 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence 368899999999999999999999999997665 45443 11 000000 0113332 368
Q ss_pred CEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073 213 DALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA 267 (331)
Q Consensus 213 DiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ 267 (331)
|+++-|.+. +.|+.+....++ -.+++-.+-+.+-+ .-.+.|.+..+.
T Consensus 99 DVlipaA~~-----~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~ 145 (217)
T cd05211 99 DIFAPCALG-----NVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIV 145 (217)
T ss_pred cEEeecccc-----CccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence 999988653 378888877787 45777788888765 446667766654
No 215
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.29 E-value=0.00068 Score=60.54 Aligned_cols=69 Identities=22% Similarity=0.194 Sum_probs=50.0
Q ss_pred CCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CC-ccc-cCCH-HhhhcCCCEEEEeccCC
Q 020073 154 PLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VP-YAF-YSNV-CELAANSDALIICCALT 222 (331)
Q Consensus 154 ~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~-~~~-~~~l-~ell~~aDiV~l~~P~t 222 (331)
|..-++.|+++.|||.|.+|...++.|...|++|+++++...+ .+ ... ...+ .+.+..+|+|+.++...
T Consensus 3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~ 81 (202)
T PRK06718 3 PLMIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDP 81 (202)
T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCH
Confidence 4455799999999999999999999999999999999876432 01 111 1112 33577888888876543
No 216
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.27 E-value=0.0063 Score=56.20 Aligned_cols=104 Identities=23% Similarity=0.233 Sum_probs=73.1
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------C---------------Cc-----------cccCC
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------V---------------PY-----------AFYSN 204 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~---------------~~-----------~~~~~ 204 (331)
.++.|+|+.|-|+|++|+.+|+.|..+|++|++++.+... . .. ....+
T Consensus 34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~ 113 (254)
T cd05313 34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFE 113 (254)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeC
Confidence 4689999999999999999999999999999844321100 0 00 00112
Q ss_pred HHhh-hcCCCEEEEeccCChhhhhhccHHHHhcCC--CCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073 205 VCEL-AANSDALIICCALTDQTRRMINREVMLALG--KEGIIVNVGRGAVIDENEMVRCLVRGEIA 267 (331)
Q Consensus 205 l~el-l~~aDiV~l~~P~t~~t~~li~~~~l~~mk--~ga~lIn~srg~~vd~~al~~aL~~~~i~ 267 (331)
.+++ ...|||++-| .+.+.|+.+..++++ .-.+++-.+-|.+-+ +-.+.|.++.|.
T Consensus 114 ~~~~~~~~~DIliPc-----Al~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~ 172 (254)
T cd05313 114 GKKPWEVPCDIAFPC-----ATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL 172 (254)
T ss_pred CcchhcCCCcEEEec-----cccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence 3333 3468988877 367789998888885 345788888888755 455778877775
No 217
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.27 E-value=0.0019 Score=68.06 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=78.7
Q ss_pred ceEEEEecChHHHHHHHHHh-hCCCEEEEECCCCCC-----------------CC-------------ccccCCHHhhhc
Q 020073 162 KRVGIVGLGNIGLQVAKRLQ-AFGCNVLYNSRSKKP-----------------VP-------------YAFYSNVCELAA 210 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~-~~G~~V~~~~~~~~~-----------------~~-------------~~~~~~l~ell~ 210 (331)
++|+|||.|.||..+|..+. ..|++|+.+|.+++. .+ .....++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 58999999999999999987 479999999987642 00 0112344 4679
Q ss_pred CCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCC
Q 020073 211 NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFE 275 (331)
Q Consensus 211 ~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~ 275 (331)
+||+|+=++|.+.+.+.-+-++.=+.++++++|....++ +.-..+.+++.. .-+.+++--|.
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~~g~Hffn 445 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASR-PENVIGLHYFS 445 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCC-cccEEEEecCC
Confidence 999999999999888877767666778898877644433 455566666643 23345666554
No 218
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.24 E-value=0.0015 Score=69.29 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=81.0
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----------------CC-------------ccccCCHHhhhcC
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------------VP-------------YAFYSNVCELAAN 211 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------------~~-------------~~~~~~l~ell~~ 211 (331)
++|+|||.|.||..+|..+...|++|+.+|++++. .+ .....++ +.+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY-SGFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HHhcc
Confidence 58999999999999999999889999999987643 00 0112345 36799
Q ss_pred CCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCC
Q 020073 212 SDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFE 275 (331)
Q Consensus 212 aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~ 275 (331)
||+|+=++|-+-+.+.-+-++.=+.++++++|-... +-++-..|.+.+.. .=+..++--|.
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNT--Ssl~i~~la~~~~~-p~r~ig~Hff~ 475 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNT--SALPIKDIAAVSSR-PEKVIGMHYFS 475 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcC--CCCCHHHHHhhcCC-ccceEEEeccC
Confidence 999999999998888777677767789998876433 33566677777654 33346776664
No 219
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.23 E-value=0.002 Score=68.05 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=80.1
Q ss_pred ceEEEEecChHHHHHHHHHh-hCCCEEEEECCCCCC-----------------CC-------------ccccCCHHhhhc
Q 020073 162 KRVGIVGLGNIGLQVAKRLQ-AFGCNVLYNSRSKKP-----------------VP-------------YAFYSNVCELAA 210 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~-~~G~~V~~~~~~~~~-----------------~~-------------~~~~~~l~ell~ 210 (331)
++|+|||.|.||..+|..+. ..|++|+.+|.+.+. .+ .....++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 68999999999999999988 779999999987542 00 0112344 5679
Q ss_pred CCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCC
Q 020073 211 NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFE 275 (331)
Q Consensus 211 ~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~ 275 (331)
+||+|+=++|-+.+.+.-+-++.=+.++|+++|...+++ +.-..|.+.+.. .-+.+++--|.
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~ig~Hff~ 450 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAAR-PEQVIGLHYFS 450 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCc-ccceEEEecCC
Confidence 999999999999888877766666778999988755443 555666676643 22345666654
No 220
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=97.23 E-value=0.0029 Score=59.94 Aligned_cols=129 Identities=17% Similarity=0.233 Sum_probs=86.0
Q ss_pred CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----------------CCc-------------cccCCHHhhhc
Q 020073 161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------------VPY-------------AFYSNVCELAA 210 (331)
Q Consensus 161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------------~~~-------------~~~~~l~ell~ 210 (331)
-++++|||.|.||+.+|..+..-|.+|+.+|++++. .+. ....++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 378999999999999999998867999999988432 000 0012222 789
Q ss_pred CCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCce
Q 020073 211 NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNV 290 (331)
Q Consensus 211 ~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nv 290 (331)
+||+|+=++|-+-+.++-+-++.=...+|+++|=.-.++ +.-.++.+++ ++.=+..++=-|.+-| +..+=-|
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs--l~it~ia~~~-~rper~iG~HFfNP~~-----~m~LVEv 153 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS--LSITELAEAL-KRPERFIGLHFFNPVP-----LMPLVEV 153 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC--CCHHHHHHHh-CCchhEEEEeccCCCC-----cceeEEE
Confidence 999999999999888877656666667888876533322 4556677777 3344456665554333 3333345
Q ss_pred EEcCCCCC
Q 020073 291 VLQPHRAV 298 (331)
Q Consensus 291 ilTPH~a~ 298 (331)
+-+.+++-
T Consensus 154 I~g~~T~~ 161 (307)
T COG1250 154 IRGEKTSD 161 (307)
T ss_pred ecCCCCCH
Confidence 55554443
No 221
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.22 E-value=0.0012 Score=53.62 Aligned_cols=84 Identities=14% Similarity=0.194 Sum_probs=53.3
Q ss_pred eEEEEe-cChHHHHHHHHHhhC-CCEEEEE-CCCCC--C----C-C-c--cccCCHH-hhh--cCCCEEEEeccCChhhh
Q 020073 163 RVGIVG-LGNIGLQVAKRLQAF-GCNVLYN-SRSKK--P----V-P-Y--AFYSNVC-ELA--ANSDALIICCALTDQTR 226 (331)
Q Consensus 163 ~vgIiG-~G~IG~~~A~~l~~~-G~~V~~~-~~~~~--~----~-~-~--~~~~~l~-ell--~~aDiV~l~~P~t~~t~ 226 (331)
+++|+| .|.+|+.+++.+... ++++..+ ++... + . + . ......+ +.+ .++|+|++|+|.... .
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~-~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVS-K 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHH-H
Confidence 589999 599999999999874 7877655 43321 1 0 1 1 0001111 222 589999999997643 3
Q ss_pred hhccHHHHhcCCCCcEEEEcCC
Q 020073 227 RMINREVMLALGKEGIIVNVGR 248 (331)
Q Consensus 227 ~li~~~~l~~mk~ga~lIn~sr 248 (331)
..+. .....+++|.++|++|.
T Consensus 80 ~~~~-~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 80 EIAP-LLPKAAEAGVKVIDLSS 100 (122)
T ss_pred HHHH-HHHhhhcCCCEEEECCc
Confidence 3322 23455799999999983
No 222
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.21 E-value=0.0023 Score=67.59 Aligned_cols=110 Identities=15% Similarity=0.182 Sum_probs=78.7
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----------------CC-------------ccccCCHHhhhcC
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------------VP-------------YAFYSNVCELAAN 211 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------------~~-------------~~~~~~l~ell~~ 211 (331)
++|+|||.|.||..+|..+...|++|+.+|++.+. .+ .....++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 57999999999999999999999999999987542 00 0112344 45799
Q ss_pred CCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCC
Q 020073 212 SDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFE 275 (331)
Q Consensus 212 aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~ 275 (331)
||+|+=++|-+-+.+.-+-++.=+.++++++|-...++ ++-.++.+++.. .=+..++=-|.
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~-p~r~ig~Hff~ 453 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKR-PENFCGMHFFN 453 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCC-cccEEEEecCC
Confidence 99999999998887776666666778999887654433 555666666643 22334554443
No 223
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.20 E-value=0.0011 Score=64.07 Aligned_cols=83 Identities=13% Similarity=0.164 Sum_probs=61.7
Q ss_pred CceEEEEecChHHHHHHHHHh-hCCC-EEEEECCCCCC----------CC--ccccCCHHhhhcCCCEEEEeccCChhhh
Q 020073 161 GKRVGIVGLGNIGLQVAKRLQ-AFGC-NVLYNSRSKKP----------VP--YAFYSNVCELAANSDALIICCALTDQTR 226 (331)
Q Consensus 161 g~~vgIiG~G~IG~~~A~~l~-~~G~-~V~~~~~~~~~----------~~--~~~~~~l~ell~~aDiV~l~~P~t~~t~ 226 (331)
-++++|||.|..++..++.+. -+.. +|.+|+|+++. .+ .....++++++++||+|+.++|.+ +..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC
Confidence 368999999999998888665 3444 78999998764 01 223468999999999999998643 223
Q ss_pred hhccHHHHhcCCCCcEEEEcC
Q 020073 227 RMINREVMLALGKEGIIVNVG 247 (331)
Q Consensus 227 ~li~~~~l~~mk~ga~lIn~s 247 (331)
.++..+. +|||+.+.-++
T Consensus 208 Pvl~~~~---lkpG~hV~aIG 225 (346)
T PRK07589 208 TILTDDM---VEPGMHINAVG 225 (346)
T ss_pred ceecHHH---cCCCcEEEecC
Confidence 5676655 59999877765
No 224
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.16 E-value=0.00069 Score=54.54 Aligned_cols=99 Identities=22% Similarity=0.302 Sum_probs=63.1
Q ss_pred eEEEEecChHHHHHHHHHhhC--CCEEE-EECCCCCC-------CCccccCCHHhhhc--CCCEEEEeccCChhhhhhcc
Q 020073 163 RVGIVGLGNIGLQVAKRLQAF--GCNVL-YNSRSKKP-------VPYAFYSNVCELAA--NSDALIICCALTDQTRRMIN 230 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~--G~~V~-~~~~~~~~-------~~~~~~~~l~ell~--~aDiV~l~~P~t~~t~~li~ 230 (331)
++||||+|.+|+...+.+... ++++. ++++++.. .+...+.++++++. +.|+|++++|........
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~-- 79 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIA-- 79 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHH--
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHH--
Confidence 799999999999999888765 55665 67777543 24446789999998 799999999865433322
Q ss_pred HHHHhcCCCCcEEEEcC-CCCccCHHHHHHHHHhCC
Q 020073 231 REVMLALGKEGIIVNVG-RGAVIDENEMVRCLVRGE 265 (331)
Q Consensus 231 ~~~l~~mk~ga~lIn~s-rg~~vd~~al~~aL~~~~ 265 (331)
...+++=+ .+++.-= --.+-+.+.|+++.++.+
T Consensus 80 ~~~l~~g~--~v~~EKP~~~~~~~~~~l~~~a~~~~ 113 (120)
T PF01408_consen 80 KKALEAGK--HVLVEKPLALTLEEAEELVEAAKEKG 113 (120)
T ss_dssp HHHHHTTS--EEEEESSSSSSHHHHHHHHHHHHHHT
T ss_pred HHHHHcCC--EEEEEcCCcCCHHHHHHHHHHHHHhC
Confidence 22332212 4555421 123334455555555544
No 225
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.04 E-value=0.0024 Score=59.08 Aligned_cols=98 Identities=19% Similarity=0.246 Sum_probs=64.6
Q ss_pred ceEEEEecChHHHHHHHHHhhC---CCEEE-EECCCCCC-----CCccccCCHHhh-hcCCCEEEEeccCChhhhhhccH
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAF---GCNVL-YNSRSKKP-----VPYAFYSNVCEL-AANSDALIICCALTDQTRRMINR 231 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~---G~~V~-~~~~~~~~-----~~~~~~~~l~el-l~~aDiV~l~~P~t~~t~~li~~ 231 (331)
.+|||||+|.||+.+++.+..- ++++. ++++.+.. .......+++++ ....|+|+=|.+-. ..+. ...
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~-av~e-~~~ 80 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQ-AIAE-HAE 80 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCHH-HHHH-HHH
Confidence 5899999999999999998752 35554 45555422 123346789996 58899999887533 2221 122
Q ss_pred HHHhcCCCCcEEEEcCCCCccC---HHHHHHHHHhC
Q 020073 232 EVMLALGKEGIIVNVGRGAVID---ENEMVRCLVRG 264 (331)
Q Consensus 232 ~~l~~mk~ga~lIn~srg~~vd---~~al~~aL~~~ 264 (331)
.. ++.|.-++=+|=|.+-| ++.|.++.+++
T Consensus 81 ~i---L~~g~dlvv~SvGALaD~~~~~~l~~~A~~~ 113 (267)
T PRK13301 81 GC---LTAGLDMIICSAGALADDALRARLIAAAEAG 113 (267)
T ss_pred HH---HhcCCCEEEEChhHhcCHHHHHHHHHHHHhC
Confidence 23 56677777778888887 44455555543
No 226
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.04 E-value=0.0025 Score=59.32 Aligned_cols=100 Identities=20% Similarity=0.249 Sum_probs=61.1
Q ss_pred ceEEEEecChHHHHHHHHHhhC-CCEEEE-ECCCCCC------C--CccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAF-GCNVLY-NSRSKKP------V--PYAFYSNVCELAANSDALIICCALTDQTRRMINR 231 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~~-~~~~~~~------~--~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~ 231 (331)
.+|||||+|.||+.+++.+... ++++.+ +++.... . +...+.+++++-.+.|+|+.|.|.... ..+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~e~--- 77 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-KEH--- 77 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-HHH---
Confidence 4799999999999999999865 566543 3332211 1 233456788875569999999875422 221
Q ss_pred HHHhcCCCCcEEEEcCCCCccCH---HHHHHHHHhCCc
Q 020073 232 EVMLALGKEGIIVNVGRGAVIDE---NEMVRCLVRGEI 266 (331)
Q Consensus 232 ~~l~~mk~ga~lIn~srg~~vd~---~al~~aL~~~~i 266 (331)
....++.|.-++-.+-|.+.|. +.|.++.+++..
T Consensus 78 -~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~ 114 (265)
T PRK13303 78 -VVPILKAGIDCAVISVGALADEALRERLEQAAEAGGA 114 (265)
T ss_pred -HHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCC
Confidence 2222455555554555555554 446666655543
No 227
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.04 E-value=0.0028 Score=60.20 Aligned_cols=110 Identities=19% Similarity=0.235 Sum_probs=69.3
Q ss_pred ceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-----C---------C--c--cccCCHHhhhcCCCEEEEeccCC
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-----V---------P--Y--AFYSNVCELAANSDALIICCALT 222 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-----~---------~--~--~~~~~l~ell~~aDiV~l~~P~t 222 (331)
++|+|||.|.||..+|..+...|. +|+.+|..... . . . ....+.++ +++||+|+++.+..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 479999999999999999988765 89999985432 0 0 0 11245665 79999999998732
Q ss_pred h-----------hhhhhcc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHH--HHhCCceEEE--ee
Q 020073 223 D-----------QTRRMIN--REVMLALGKEGIIVNVGRGAVIDENEMVRC--LVRGEIAGAG--LD 272 (331)
Q Consensus 223 ~-----------~t~~li~--~~~l~~mk~ga~lIn~srg~~vd~~al~~a--L~~~~i~ga~--lD 272 (331)
. ....++. .+.+....+.+++|+++-.-=+-...+.+. +...++.|.+ ||
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 1 1112221 122333457889999875443333444444 4455566665 67
No 228
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.03 E-value=0.00097 Score=62.61 Aligned_cols=64 Identities=16% Similarity=0.216 Sum_probs=48.6
Q ss_pred CCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC---C----Cc----ccc---CCHHhhhcCCCEEEEeccCC
Q 020073 159 LGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP---V----PY----AFY---SNVCELAANSDALIICCALT 222 (331)
Q Consensus 159 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~---~----~~----~~~---~~l~ell~~aDiV~l~~P~t 222 (331)
+.|+++.|||.|.+|++++..|...|+ +|++++|+.++ . .. ... .++.+.+.++|+|+.|+|..
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 678999999999999999999999998 79999998654 0 00 011 12335567888888888864
No 229
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.03 E-value=0.0017 Score=58.46 Aligned_cols=91 Identities=24% Similarity=0.290 Sum_probs=63.1
Q ss_pred eEEEEecChHHHHHHHHHhh--CCCE-EEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHH
Q 020073 163 RVGIVGLGNIGLQVAKRLQA--FGCN-VLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMINRE 232 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~--~G~~-V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~ 232 (331)
+|||||+|.||+.+.+.++. .+++ +.+||+..++ .......++++++++.|+|+=|... ++.+.+.
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~-~Av~e~~--- 77 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASP-EAVREYV--- 77 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCH-HHHHHHh---
Confidence 79999999999999999984 2454 5688888765 1222346899999999999988642 2333222
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHH
Q 020073 233 VMLALGKEGIIVNVGRGAVIDENEMV 258 (331)
Q Consensus 233 ~l~~mk~ga~lIn~srg~~vd~~al~ 258 (331)
.+.+|.|-=+|=+|-|.+.|+.-+.
T Consensus 78 -~~~L~~g~d~iV~SVGALad~~l~e 102 (255)
T COG1712 78 -PKILKAGIDVIVMSVGALADEGLRE 102 (255)
T ss_pred -HHHHhcCCCEEEEechhccChHHHH
Confidence 2335666666667778888765543
No 230
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.02 E-value=0.0017 Score=55.61 Aligned_cols=68 Identities=25% Similarity=0.315 Sum_probs=48.0
Q ss_pred CCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC----CCc-cc-cCCHH-hhhcCCCEEEEecc
Q 020073 153 YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP----VPY-AF-YSNVC-ELAANSDALIICCA 220 (331)
Q Consensus 153 ~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----~~~-~~-~~~l~-ell~~aDiV~l~~P 220 (331)
+|+.-+|+|++|.|||.|.+|...++.|...|++|+++++...+ .+. .. ...++ +-+.++|+|+.++.
T Consensus 5 ~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~ 79 (157)
T PRK06719 5 YPLMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATN 79 (157)
T ss_pred cceEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHHHhccCcEEEecccChhcCCCceEEEECCC
Confidence 45566899999999999999999999999999999998754322 110 00 11122 23567777777654
No 231
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=96.94 E-value=0.0025 Score=59.09 Aligned_cols=111 Identities=18% Similarity=0.288 Sum_probs=70.5
Q ss_pred EEEEec-ChHHHHHHHHHhhCC----CEEEEECCCCCC------------CC---c--cccCCHHhhhcCCCEEEEeccC
Q 020073 164 VGIVGL-GNIGLQVAKRLQAFG----CNVLYNSRSKKP------------VP---Y--AFYSNVCELAANSDALIICCAL 221 (331)
Q Consensus 164 vgIiG~-G~IG~~~A~~l~~~G----~~V~~~~~~~~~------------~~---~--~~~~~l~ell~~aDiV~l~~P~ 221 (331)
|+|||. |.+|..+|..+...| .+|..+|...+. .. . ....++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999999999998777 689999987644 01 0 1124567899999999996521
Q ss_pred --Ch---------hhhhhcc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHH--HHhCCceEEE-eecC
Q 020073 222 --TD---------QTRRMIN--REVMLALGKEGIIVNVGRGAVIDENEMVRC--LVRGEIAGAG-LDVF 274 (331)
Q Consensus 222 --t~---------~t~~li~--~~~l~~mk~ga~lIn~srg~~vd~~al~~a--L~~~~i~ga~-lDV~ 274 (331)
.+ .+..++. .+.+.+..|.+++||++-.-=+-...+.+. +...++.|.+ +|..
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~ 149 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPI 149 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHH
Confidence 11 1111220 123334458899999963222222334444 4566788888 8764
No 232
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.93 E-value=0.0063 Score=49.92 Aligned_cols=96 Identities=21% Similarity=0.244 Sum_probs=57.8
Q ss_pred eEEEEec-ChHHHHHHHHHhh-CCCEEE-EECCCCCC--------------CCccccCCHHhhhcCCCEEEEeccCChhh
Q 020073 163 RVGIVGL-GNIGLQVAKRLQA-FGCNVL-YNSRSKKP--------------VPYAFYSNVCELAANSDALIICCALTDQT 225 (331)
Q Consensus 163 ~vgIiG~-G~IG~~~A~~l~~-~G~~V~-~~~~~~~~--------------~~~~~~~~l~ell~~aDiV~l~~P~t~~t 225 (331)
+|+|+|+ |+||+.+++.+.. -|+++. ++++...+ .+.....++++++.++|+|+-.. ..+.+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~~ 80 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDAV 80 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHHh
Confidence 7999999 9999999999987 788865 56666521 22334578999999999888775 22233
Q ss_pred hhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 020073 226 RRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVR 263 (331)
Q Consensus 226 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~ 263 (331)
...+ +.. ++.|.-+|-...|---++.+.++.+.+
T Consensus 81 ~~~~-~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 81 YDNL-EYA---LKHGVPLVIGTTGFSDEQIDELEELAK 114 (124)
T ss_dssp HHHH-HHH---HHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred HHHH-HHH---HhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence 3322 222 234555555555654344445555444
No 233
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=96.92 E-value=0.0018 Score=62.28 Aligned_cols=57 Identities=30% Similarity=0.375 Sum_probs=46.4
Q ss_pred CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCC-----Cc---ccc---CCHHhhhcCCCEEEE
Q 020073 161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV-----PY---AFY---SNVCELAANSDALII 217 (331)
Q Consensus 161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~---~~~---~~l~ell~~aDiV~l 217 (331)
+++|||||-|..|+.++...+.+|.+|++.++.+... .. ..+ ..+.++.+.||+|..
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 4799999999999999999999999999999877651 10 112 258889999999975
No 234
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.92 E-value=0.00041 Score=62.33 Aligned_cols=137 Identities=20% Similarity=0.265 Sum_probs=85.0
Q ss_pred CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--------------------C--Cc-------------cccC
Q 020073 159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--------------------V--PY-------------AFYS 203 (331)
Q Consensus 159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--------------------~--~~-------------~~~~ 203 (331)
..-+.|+|||.|.||..+|+.....|.+|+.+|++.+. . +. ....
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t 88 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST 88 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence 34578999999999999999999999999999987643 0 00 0124
Q ss_pred CHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCC
Q 020073 204 NVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIV-NVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPK 282 (331)
Q Consensus 204 ~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lI-n~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~ 282 (331)
++.++++++|+|+=++-.+-..+.=+-++.=...|+.+++. |+|+ +...++..+++.... .++|-.|.+-|
T Consensus 89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~sr-f~GlHFfNPvP---- 160 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRPSR-FAGLHFFNPVP---- 160 (298)
T ss_pred CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccChhh-hceeeccCCch----
Confidence 56677888888876654332222211122222346666654 5543 455677777776544 57898887666
Q ss_pred ccccCCceEEcCCCCCCcHHHH
Q 020073 283 ELLELDNVVLQPHRAVFTSECF 304 (331)
Q Consensus 283 ~L~~~~nvilTPH~a~~t~~~~ 304 (331)
..++=-||=|+..+--|..+.
T Consensus 161 -vMKLvEVir~~~TS~eTf~~l 181 (298)
T KOG2304|consen 161 -VMKLVEVIRTDDTSDETFNAL 181 (298)
T ss_pred -hHHHhhhhcCCCCCHHHHHHH
Confidence 333334555555544444333
No 235
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.92 E-value=0.0018 Score=52.77 Aligned_cols=83 Identities=17% Similarity=0.271 Sum_probs=51.6
Q ss_pred eEEEEe-cChHHHHHHHHHhh-CCCEEE-EECCCCCC-------CC----cc--cc-CCHHhhhcCCCEEEEeccCChhh
Q 020073 163 RVGIVG-LGNIGLQVAKRLQA-FGCNVL-YNSRSKKP-------VP----YA--FY-SNVCELAANSDALIICCALTDQT 225 (331)
Q Consensus 163 ~vgIiG-~G~IG~~~A~~l~~-~G~~V~-~~~~~~~~-------~~----~~--~~-~~l~ell~~aDiV~l~~P~t~~t 225 (331)
+|+||| .|.+|+.+.+.|.. ..+++. +++++... .+ .. .. ..-.+.+.++|+|++|+|....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~- 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGAS- 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHH-
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHH-
Confidence 699999 99999999999986 345544 44444411 11 00 01 1123456999999999985432
Q ss_pred hhhccHHHHhcCCCCcEEEEcCCCC
Q 020073 226 RRMINREVMLALGKEGIIVNVGRGA 250 (331)
Q Consensus 226 ~~li~~~~l~~mk~ga~lIn~srg~ 250 (331)
..+. ... .++|..+|+.|..-
T Consensus 80 ~~~~-~~~---~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 80 KELA-PKL---LKAGIKVIDLSGDF 100 (121)
T ss_dssp HHHH-HHH---HHTTSEEEESSSTT
T ss_pred HHHH-HHH---hhCCcEEEeCCHHH
Confidence 2222 222 57889999987543
No 236
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.91 E-value=0.0072 Score=60.10 Aligned_cols=105 Identities=17% Similarity=0.174 Sum_probs=70.4
Q ss_pred CccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCc-------------------------cccCC
Q 020073 156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPY-------------------------AFYSN 204 (331)
Q Consensus 156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~-------------------------~~~~~ 204 (331)
|.+|.|++|.|.|+|++|+..|+.|..+|++|++++.+... ... ....+
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~ 302 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE 302 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence 45799999999999999999999999999999985442211 000 00112
Q ss_pred HHhhh-cCCCEEEEeccCChhhhhhccHHHHhcCCCC-c-EEEEcCCCCccCHHHHHHHHHhCCce
Q 020073 205 VCELA-ANSDALIICCALTDQTRRMINREVMLALGKE-G-IIVNVGRGAVIDENEMVRCLVRGEIA 267 (331)
Q Consensus 205 l~ell-~~aDiV~l~~P~t~~t~~li~~~~l~~mk~g-a-~lIn~srg~~vd~~al~~aL~~~~i~ 267 (331)
.++++ ..|||++-| .+.+.|+++...+++.. . +++-.+-| .+..++. +.|.++.|.
T Consensus 303 ~d~~~~~~cDIliPa-----Al~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI~ 361 (444)
T PRK14031 303 GARPWGEKGDIALPS-----ATQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKIL 361 (444)
T ss_pred CcccccCCCcEEeec-----ccccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCcE
Confidence 33332 458888865 36778998888888653 3 56666667 5555554 455555553
No 237
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.90 E-value=0.0045 Score=61.60 Aligned_cols=119 Identities=21% Similarity=0.272 Sum_probs=81.4
Q ss_pred CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC----------CCccc--cCCHHhhhcCCCEEEEeccCChhhh
Q 020073 159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP----------VPYAF--YSNVCELAANSDALIICCALTDQTR 226 (331)
Q Consensus 159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----------~~~~~--~~~l~ell~~aDiV~l~~P~t~~t~ 226 (331)
..|++|.|+|+|.-|.++|+.|+..|++|+++|..+.+ .+... -...++.+..+|+|+.. |.-+-+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S-PGi~~~~ 83 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS-PGIPPTH 83 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC-CCCCCCC
Confidence 45999999999999999999999999999999965544 01111 01122678889999886 4433333
Q ss_pred hhccH------------HHHhcC--CCCcEEEEcCCCCccCHHHHHHHHHhC--------CceEEEeecCCCCC
Q 020073 227 RMINR------------EVMLAL--GKEGIIVNVGRGAVIDENEMVRCLVRG--------EIAGAGLDVFENEP 278 (331)
Q Consensus 227 ~li~~------------~~l~~m--k~ga~lIn~srg~~vd~~al~~aL~~~--------~i~ga~lDV~~~EP 278 (331)
.++.+ +.+-+. +...+-|.-+-|+.-...-+...|++. .|+..++|+.++++
T Consensus 84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~~ 157 (448)
T COG0771 84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQAE 157 (448)
T ss_pred HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcccC
Confidence 33322 233332 233677777889988887777777654 47788899988743
No 238
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.90 E-value=0.0072 Score=60.15 Aligned_cols=105 Identities=17% Similarity=0.241 Sum_probs=71.5
Q ss_pred CccCCCceEEEEecChHHHHHHHHHhhCCCEEEEE-CCCCC---C--C-------------C-cc--------ccCCHHh
Q 020073 156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYN-SRSKK---P--V-------------P-YA--------FYSNVCE 207 (331)
Q Consensus 156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~-~~~~~---~--~-------------~-~~--------~~~~l~e 207 (331)
+.++.|++|.|.|+|++|+.+|+.|..+|++|+++ |.+.. + . + .. ...+.++
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~ 306 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS 306 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence 44689999999999999999999999999999877 42210 0 0 0 00 0112333
Q ss_pred hhc-CCCEEEEeccCChhhhhhccHHHHhcCC--CCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073 208 LAA-NSDALIICCALTDQTRRMINREVMLALG--KEGIIVNVGRGAVIDENEMVRCLVRGEIA 267 (331)
Q Consensus 208 ll~-~aDiV~l~~P~t~~t~~li~~~~l~~mk--~ga~lIn~srg~~vd~~al~~aL~~~~i~ 267 (331)
++. +|||++-|. +.+.|+.+...+++ .-.+++-.+-|.+ ..+ -.+.|.++.|.
T Consensus 307 i~~~d~DVliPaA-----l~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~-A~~~L~~rGI~ 362 (445)
T PRK09414 307 PWSVPCDIALPCA-----TQNELDEEDAKTLIANGVKAVAEGANMPS-TPE-AIEVFLEAGVL 362 (445)
T ss_pred ccccCCcEEEecC-----CcCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHH-HHHHHHHCCcE
Confidence 333 689998775 35577777766663 3457888888888 333 45677777765
No 239
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.88 E-value=0.0021 Score=61.62 Aligned_cols=37 Identities=32% Similarity=0.537 Sum_probs=34.5
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP 196 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~ 196 (331)
.|++|+|+|+|..|....+.++++|++|++++++.++
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K 202 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEK 202 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHH
Confidence 4899999999999999999999999999999998764
No 240
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.84 E-value=0.012 Score=55.76 Aligned_cols=103 Identities=15% Similarity=0.176 Sum_probs=72.1
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC---CCccccCCHHhhhcCCCEEEEeccCChhh---hh------
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP---VPYAFYSNVCELAANSDALIICCALTDQT---RR------ 227 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~---~~~~~~~~l~ell~~aDiV~l~~P~t~~t---~~------ 227 (331)
.|++++|||--.=-..++++|...|++|.++.-.... .+.....+.+++++++|+|++-+|.+.+. +.
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~ 80 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEK 80 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccC
Confidence 3789999999999999999999999998865432221 34444456788999999999998865322 11
Q ss_pred -hccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073 228 -MINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA 267 (331)
Q Consensus 228 -li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ 267 (331)
-++.+.+++|++|..++ ++. .+.. +-+.+.+..+.
T Consensus 81 ~~~~~~~l~~l~~~~~v~-~G~---~~~~-~~~~~~~~gi~ 116 (296)
T PRK08306 81 LVLTEELLELTPEHCTIF-SGI---ANPY-LKELAKETNRK 116 (296)
T ss_pred CcchHHHHHhcCCCCEEE-Eec---CCHH-HHHHHHHCCCe
Confidence 13678999999998444 333 2222 33556677775
No 241
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.82 E-value=0.0065 Score=60.84 Aligned_cols=106 Identities=14% Similarity=0.159 Sum_probs=72.9
Q ss_pred CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----------CCcccc--CCHHhhhcCCCEEEEeccCChhh
Q 020073 159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------VPYAFY--SNVCELAANSDALIICCALTDQT 225 (331)
Q Consensus 159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------~~~~~~--~~l~ell~~aDiV~l~~P~t~~t 225 (331)
+.+++|+|+|+|..|.++|+.|+..|++|.++|+.... .+.... ....+.+.++|+|+.. |.-+.+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~~ 90 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRID 90 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCCC
Confidence 66899999999999999999999999999999976532 111111 1223556789998887 654433
Q ss_pred hhhc-----------cH-HHHhc-CCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 020073 226 RRMI-----------NR-EVMLA-LGKEGIIVNVGRGAVIDENEMVRCLVRGE 265 (331)
Q Consensus 226 ~~li-----------~~-~~l~~-mk~ga~lIn~srg~~vd~~al~~aL~~~~ 265 (331)
...+ ++ +.+.+ .+...+-|--+.|+.-..+-+...|....
T Consensus 91 ~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g 143 (458)
T PRK01710 91 SPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEG 143 (458)
T ss_pred chHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 2222 21 12222 23346788888999988888888887644
No 242
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.82 E-value=0.0028 Score=59.66 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=33.6
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCCE-EEEECCCC
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCN-VLYNSRSK 194 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~ 194 (331)
++.|+++.|+|.|.+|++++..|...|++ |.+++|+.
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 36789999999999999999999999996 99999975
No 243
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.80 E-value=0.0037 Score=55.72 Aligned_cols=79 Identities=24% Similarity=0.282 Sum_probs=56.0
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------C-----------------Cc--c--
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------V-----------------PY--A-- 200 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~-----------------~~--~-- 200 (331)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|+..-. . .. .
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 96 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL 96 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 45899999999999999999999999998 78888765210 0 00 0
Q ss_pred --c--cCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhc
Q 020073 201 --F--YSNVCELAANSDALIICCALTDQTRRMINREVMLA 236 (331)
Q Consensus 201 --~--~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~ 236 (331)
. ..+++++++++|+|+.|+. +.+++.++++...+.
T Consensus 97 ~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~ 135 (202)
T TIGR02356 97 KERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVAL 135 (202)
T ss_pred hhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence 0 0134567888998888874 456777776655443
No 244
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.73 E-value=0.0055 Score=58.64 Aligned_cols=60 Identities=23% Similarity=0.241 Sum_probs=45.9
Q ss_pred CCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------CC--c--cccCCHHhhhcCCCEEEEec
Q 020073 159 LGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------VP--Y--AFYSNVCELAANSDALIICC 219 (331)
Q Consensus 159 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~~--~--~~~~~l~ell~~aDiV~l~~ 219 (331)
+..++|+|||.|.+|..+|..+...|. +|+.+|.+++. .+ . ....+. +.+++||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 455799999999999999999887774 89999987752 00 0 112355 5789999999976
No 245
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.72 E-value=0.0085 Score=55.47 Aligned_cols=61 Identities=20% Similarity=0.315 Sum_probs=45.8
Q ss_pred ceEEEEec-ChHHHHHHHHHhh-CCCEEEE-ECCCCCC------CCccccCCHHhhhcCCCEEEEeccCC
Q 020073 162 KRVGIVGL-GNIGLQVAKRLQA-FGCNVLY-NSRSKKP------VPYAFYSNVCELAANSDALIICCALT 222 (331)
Q Consensus 162 ~~vgIiG~-G~IG~~~A~~l~~-~G~~V~~-~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t 222 (331)
.+|+|+|+ |.||+.+++.+.. -++++.+ +++.... .+...+.+++++++.+|+|+.++|..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~ 71 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPE 71 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHH
Confidence 47999998 9999999999875 4688764 6665533 12234578999998999999887533
No 246
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=96.64 E-value=0.0044 Score=57.15 Aligned_cols=96 Identities=21% Similarity=0.158 Sum_probs=68.5
Q ss_pred CCccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC------------CCccccCCHHhhhcCCCEEEEeccC
Q 020073 155 LGSKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP------------VPYAFYSNVCELAANSDALIICCAL 221 (331)
Q Consensus 155 ~~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~------------~~~~~~~~l~ell~~aDiV~l~~P~ 221 (331)
+|.+|+..+++|+| .|.||..+|+-+.+.+......-|.... .+.....+++..+.+.|+++-...
T Consensus 161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs- 239 (351)
T COG5322 161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVAS- 239 (351)
T ss_pred hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEee-
Confidence 57899999999999 5999999999999988866555432211 122234577777666666655432
Q ss_pred ChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHH
Q 020073 222 TDQTRRMINREVMLALGKEGIIVNVGRGAVIDEN 255 (331)
Q Consensus 222 t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~ 255 (331)
..+-..|+..+ +|||+++|+-++..=+|+.
T Consensus 240 -~~~g~~I~pq~---lkpg~~ivD~g~P~dvd~~ 269 (351)
T COG5322 240 -MPKGVEIFPQH---LKPGCLIVDGGYPKDVDTS 269 (351)
T ss_pred -cCCCceechhh---ccCCeEEEcCCcCcccccc
Confidence 23445677765 6999999999998866654
No 247
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.61 E-value=0.0092 Score=56.61 Aligned_cols=86 Identities=20% Similarity=0.349 Sum_probs=56.9
Q ss_pred ceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC-----C---------Cc--cccCCHHhhhcCCCEEEEeccCCh
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP-----V---------PY--AFYSNVCELAANSDALIICCALTD 223 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~-----~---------~~--~~~~~l~ell~~aDiV~l~~P~t~ 223 (331)
++|+|||.|.+|+.+|..|...|. +|..+|++.+. . .. .....-.+.+++||+|+++.....
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~ 80 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ 80 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence 479999999999999999998884 79999987654 0 10 011122345799999999985421
Q ss_pred ---hhh--------hhcc--HHHHhcCCCCcEEEEcC
Q 020073 224 ---QTR--------RMIN--REVMLALGKEGIIVNVG 247 (331)
Q Consensus 224 ---~t~--------~li~--~~~l~~mk~ga~lIn~s 247 (331)
.++ .++. ...+.+..|.+++|+++
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 111 1120 12233446788999987
No 248
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.60 E-value=0.01 Score=56.18 Aligned_cols=57 Identities=25% Similarity=0.307 Sum_probs=43.1
Q ss_pred ceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-----C----C-------cc--ccCCHHhhhcCCCEEEEec
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-----V----P-------YA--FYSNVCELAANSDALIICC 219 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-----~----~-------~~--~~~~l~ell~~aDiV~l~~ 219 (331)
++|+|||.|.+|..+|..+...|. +|+.+|+..+. . . .. ...+. +.+++||+|+++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~ 78 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITA 78 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECC
Confidence 689999999999999999987664 99999986543 0 0 00 11344 5689999999986
No 249
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=96.59 E-value=0.0088 Score=58.43 Aligned_cols=103 Identities=30% Similarity=0.433 Sum_probs=72.8
Q ss_pred CccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC------------------C-------CCccccCCHHhhh-
Q 020073 156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK------------------P-------VPYAFYSNVCELA- 209 (331)
Q Consensus 156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~------------------~-------~~~~~~~~l~ell- 209 (331)
+.++.|+||.|=|+|++|+.+|+.+...|.+|++++.+.. + .+.... +-++++
T Consensus 202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i-~~~e~~~ 280 (411)
T COG0334 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYI-TNEELLE 280 (411)
T ss_pred CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEc-ccccccc
Confidence 4458999999999999999999999999999998876654 1 011111 225544
Q ss_pred cCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 020073 210 ANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEI 266 (331)
Q Consensus 210 ~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i 266 (331)
..|||++=| ++.+.|+.+...+++.. +++-.+-|.+-.+ |--..++.|-+
T Consensus 281 ~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t~e-A~~i~~erGIl 330 (411)
T COG0334 281 VDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTTPE-ADEILLERGIL 330 (411)
T ss_pred ccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCCHH-HHHHHHHCCCE
Confidence 358887755 47788988888888876 7788888887633 33333355433
No 250
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.59 E-value=0.0061 Score=57.20 Aligned_cols=104 Identities=20% Similarity=0.225 Sum_probs=67.4
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-------CC----ccccCCHHhh--hcCCCEEEEeccCC
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-------VP----YAFYSNVCEL--AANSDALIICCALT 222 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------~~----~~~~~~l~el--l~~aDiV~l~~P~t 222 (331)
.+..|+++.|+|.|..+++++..|+..|+ +|++++|+.++ .+ ......+.++ ..++|+||.++|..
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G 201 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG 201 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence 35679999999999999999999999996 79999998765 01 0011122222 22699999999975
Q ss_pred hhhh---hhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073 223 DQTR---RMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG 264 (331)
Q Consensus 223 ~~t~---~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~ 264 (331)
-.-. .+++ .+.++++.++.++--... +..-|..|=+.|
T Consensus 202 m~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~TplL~~A~~~G 242 (283)
T COG0169 202 MAGPEGDSPVP---AELLPKGAIVYDVVYNPL-ETPLLREARAQG 242 (283)
T ss_pred CCCCCCCCCCc---HHhcCcCCEEEEeccCCC-CCHHHHHHHHcC
Confidence 4322 1343 344677777777755543 333333333334
No 251
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.58 E-value=0.0034 Score=59.31 Aligned_cols=36 Identities=44% Similarity=0.593 Sum_probs=33.8
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK 195 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~ 195 (331)
.|+.+||+|+|.+|.--.+.+++||++|++.+++.+
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~ 216 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSK 216 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCch
Confidence 799999999999999999999999999999998763
No 252
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.58 E-value=0.0076 Score=58.09 Aligned_cols=37 Identities=32% Similarity=0.414 Sum_probs=33.3
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS 193 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~ 193 (331)
..|++++|.|||+|.+|..+|+.|...|. ++..+|+.
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 35899999999999999999999999998 78878765
No 253
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.55 E-value=0.0047 Score=60.45 Aligned_cols=94 Identities=19% Similarity=0.254 Sum_probs=62.6
Q ss_pred CCceEEEEe-cChHHHHHHHHHhhC-CCEEEEECCCCCC---CC--c--------cccCCHHh-hhcCCCEEEEeccCCh
Q 020073 160 GGKRVGIVG-LGNIGLQVAKRLQAF-GCNVLYNSRSKKP---VP--Y--------AFYSNVCE-LAANSDALIICCALTD 223 (331)
Q Consensus 160 ~g~~vgIiG-~G~IG~~~A~~l~~~-G~~V~~~~~~~~~---~~--~--------~~~~~l~e-ll~~aDiV~l~~P~t~ 223 (331)
..++|+|+| .|.+|+++.+.|... +++|..+.+.... .. . ....+++. .++++|+|++++|..
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~- 115 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG- 115 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH-
Confidence 456899999 599999999999876 6788776543221 00 0 01222332 258899999999854
Q ss_pred hhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHH
Q 020073 224 QTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVR 259 (331)
Q Consensus 224 ~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~ 259 (331)
....+ ...|+.|..+|+.|..-..+.++.++
T Consensus 116 ~s~~i-----~~~~~~g~~VIDlSs~fRl~~~~~y~ 146 (381)
T PLN02968 116 TTQEI-----IKALPKDLKIVDLSADFRLRDIAEYE 146 (381)
T ss_pred HHHHH-----HHHHhCCCEEEEcCchhccCCcccch
Confidence 33333 34456789999999777666654444
No 254
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=96.54 E-value=0.011 Score=50.65 Aligned_cols=88 Identities=15% Similarity=0.197 Sum_probs=65.4
Q ss_pred CCceEEEEe--cChHHHHHHHHHhhCCCEEEEECCCCC--CC---------------C--ccccCCHHhhhcCCCEEEEe
Q 020073 160 GGKRVGIVG--LGNIGLQVAKRLQAFGCNVLYNSRSKK--PV---------------P--YAFYSNVCELAANSDALIIC 218 (331)
Q Consensus 160 ~g~~vgIiG--~G~IG~~~A~~l~~~G~~V~~~~~~~~--~~---------------~--~~~~~~l~ell~~aDiV~l~ 218 (331)
.|++|++|| .+++.++++..+..||+++.+..+..- +. + .....+++++++++|+|..-
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 489999999 389999999999999999988877651 11 1 12347899999999998876
Q ss_pred ccCC---hh--------hhhhccHHHHhcCCCCcEEEEcC
Q 020073 219 CALT---DQ--------TRRMINREVMLALGKEGIIVNVG 247 (331)
Q Consensus 219 ~P~t---~~--------t~~li~~~~l~~mk~ga~lIn~s 247 (331)
.-.+ .+ ....++++.++.+|++++|.-+.
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 5431 11 11456899999999999998874
No 255
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.49 E-value=0.0036 Score=56.85 Aligned_cols=62 Identities=23% Similarity=0.333 Sum_probs=48.1
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC----CC----c-------cccCCHHhh-hcCCCEEEEeccCCh
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP----VP----Y-------AFYSNVCEL-AANSDALIICCALTD 223 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----~~----~-------~~~~~l~el-l~~aDiV~l~~P~t~ 223 (331)
+++.|+|+|.+|..+|+.|...|++|+..++.+.. .. . .....|.++ +.++|+++.++..+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~ 78 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDE 78 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCH
Confidence 47899999999999999999999999999887654 01 1 011246666 889999999987654
No 256
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.49 E-value=0.015 Score=53.48 Aligned_cols=92 Identities=17% Similarity=0.274 Sum_probs=60.9
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCc
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEG 241 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga 241 (331)
.++-|+|.|.+++++|+.++.+|++|+++|..+.... ......++.+....| .+.+..+.+.+
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~-------~~~~~~~~~~~~~~~----------~~~~~~~~~~t 163 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFP-------EDLPDGVATLVTDEP----------EAEVAEAPPGS 163 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCccccc-------ccCCCCceEEecCCH----------HHHHhcCCCCc
Confidence 4799999999999999999999999999986543110 011123443332211 12222345677
Q ss_pred EEEEcCCCCccCHHHHHHHHHhCCceEEE
Q 020073 242 IIVNVGRGAVIDENEMVRCLVRGEIAGAG 270 (331)
Q Consensus 242 ~lIn~srg~~vd~~al~~aL~~~~i~ga~ 270 (331)
.+|=+.++.-.|.++|..+|.+....+.+
T Consensus 164 ~vvi~th~h~~D~~~L~~aL~~~~~~YIG 192 (246)
T TIGR02964 164 YFLVLTHDHALDLELCHAALRRGDFAYFG 192 (246)
T ss_pred EEEEEeCChHHHHHHHHHHHhCCCCcEEE
Confidence 77777799999999999999544443333
No 257
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.48 E-value=0.0075 Score=55.47 Aligned_cols=103 Identities=28% Similarity=0.376 Sum_probs=70.6
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCCEEEEE--------CCCCCC-----------CC-ccccC----------CHH-
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYN--------SRSKKP-----------VP-YAFYS----------NVC- 206 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~--------~~~~~~-----------~~-~~~~~----------~l~- 206 (331)
++.|+++.|-|+|.+|+.+|+.|...|++|++. ++..-+ .. ...+. +-+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 108 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD 108 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence 589999999999999999999999999998765 221111 01 01011 121
Q ss_pred hhh-cCCCEEEEeccCChhhhhhccHHHHh-cCCCCc-EEEEcCCCCccCHHHHHHHHHhCCce
Q 020073 207 ELA-ANSDALIICCALTDQTRRMINREVML-ALGKEG-IIVNVGRGAVIDENEMVRCLVRGEIA 267 (331)
Q Consensus 207 ell-~~aDiV~l~~P~t~~t~~li~~~~l~-~mk~ga-~lIn~srg~~vd~~al~~aL~~~~i~ 267 (331)
+++ ..||+++-|. ..+.|+.+... .+++|+ +++-.+-+.+-++.. . .|.++.|.
T Consensus 109 ~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~-~-~L~~rGI~ 165 (244)
T PF00208_consen 109 EILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLTPEAD-E-ILRERGIL 165 (244)
T ss_dssp HGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHH-H-HHHHTT-E
T ss_pred ccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhccHHHH-H-HHHHCCCE
Confidence 454 5799999883 45678888888 777665 677777788764444 3 88888875
No 258
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.46 E-value=0.019 Score=57.06 Aligned_cols=154 Identities=17% Similarity=0.121 Sum_probs=89.4
Q ss_pred CccCCCceEEEEecChHHHHHHHHHhhCCCEEEE--------ECCCCCC--C--------------------Cc--cccC
Q 020073 156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY--------NSRSKKP--V--------------------PY--AFYS 203 (331)
Q Consensus 156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~--------~~~~~~~--~--------------------~~--~~~~ 203 (331)
|.+|.|+||.|=|+|++|+.+|+.|..+|++|++ |++..-. . .+ ....
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i 302 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF 302 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence 4578999999999999999999999999999988 4432111 0 00 0001
Q ss_pred CHHhhh-cCCCEEEEeccCChhhhhhccHHHHhcCC--CCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCC
Q 020073 204 NVCELA-ANSDALIICCALTDQTRRMINREVMLALG--KEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYV 280 (331)
Q Consensus 204 ~l~ell-~~aDiV~l~~P~t~~t~~li~~~~l~~mk--~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~ 280 (331)
+-++++ ..|||++-| ++.+.|+.+...++. .-.+++-.+-| .+..+| .+.|.++.|. .+=|+..+-=-.
T Consensus 303 ~~~~~~~~~cDVliPc-----Al~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA-~~iL~~rGI~-~vPD~~aNAGGV 374 (445)
T PRK14030 303 AGKKPWEQKVDIALPC-----ATQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEA-IDKFIAAKQL-FAPGKAVNAGGV 374 (445)
T ss_pred CCccceeccccEEeec-----cccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHH-HHHHHHCCCE-EeCcceecCCCe
Confidence 223333 358888766 377788888777772 23477777778 455544 3667777665 223332211100
Q ss_pred CCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 020073 281 PKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALF 319 (331)
Q Consensus 281 ~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~ 319 (331)
- .-.+..+-=.-|.-|...+..+++.+.+.+...+.+
T Consensus 375 i--vs~~E~~qn~~~~~w~~eeV~~~L~~~m~~~~~~v~ 411 (445)
T PRK14030 375 A--TSGLEMSQNAMHLSWSAEEVDEKLHQIMSGIHEQCV 411 (445)
T ss_pred e--eehhhhhccccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 0 001111112245555566666666665555555544
No 259
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.45 E-value=0.008 Score=54.56 Aligned_cols=146 Identities=23% Similarity=0.152 Sum_probs=85.9
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------CC-----------------c--cc-
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------VP-----------------Y--AF- 201 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~~-----------------~--~~- 201 (331)
..|.+++|.|+|+|.+|..+|+.|...|+ +++.+|...-. .+ . ..
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 35889999999999999999999999998 67777643100 00 0 00
Q ss_pred -----cCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCC
Q 020073 202 -----YSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFEN 276 (331)
Q Consensus 202 -----~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~ 276 (331)
..++++++.++|+|+.|+. +.+++.++++...+ .+.-+|..+- .|. .|.. -++.+
T Consensus 97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g~--------------~g~-~g~v-~~~~p 156 (228)
T cd00757 97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGAV--------------LGF-EGQV-TVFIP 156 (228)
T ss_pred cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEEe--------------ccC-EEEE-EEECC
Confidence 1234567888999888875 56677777665543 3445566542 122 2221 12211
Q ss_pred C--CCCCCccccCC-ce-EEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 020073 277 E--PYVPKELLELD-NV-VLQPHRAVFTSECFVDLCELAVGNLEALFSNQP 323 (331)
Q Consensus 277 E--P~~~~~L~~~~-nv-ilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~ 323 (331)
. | ....++... .- .-++..++...-...-++.+++..+.+++.|.+
T Consensus 157 ~~~~-c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~a~e~i~~l~g~~ 206 (228)
T cd00757 157 GEGP-CYRCLFPEPPPPGVPSCAEAGVLGPLVGVIGSLQALEALKILLGIG 206 (228)
T ss_pred CCCC-CccccCCCCCCCCCCccccCCcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 1 1 011111110 00 123344555555566778888888999998874
No 260
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.42 E-value=0.0052 Score=51.57 Aligned_cols=104 Identities=24% Similarity=0.273 Sum_probs=68.6
Q ss_pred EEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCcc--------------ccCCHHhhhcCCCEEEEeccCChh
Q 020073 164 VGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYA--------------FYSNVCELAANSDALIICCALTDQ 224 (331)
Q Consensus 164 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~--------------~~~~l~ell~~aDiV~l~~P~t~~ 224 (331)
|+|+|.|.||..+|.+|+..|.+|..+.|.... .+.. ...+..+.....|+|++|+... +
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~-~ 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY-Q 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG-G
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc-c
Confidence 689999999999999999899999999887610 0100 0111234678899999998643 4
Q ss_pred hhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEE
Q 020073 225 TRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAG 270 (331)
Q Consensus 225 t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~ 270 (331)
+...+.. .-..+.+.+.++-.--| +-.++.+.+.+...++.++.
T Consensus 80 ~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~ 123 (151)
T PF02558_consen 80 LEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV 123 (151)
T ss_dssp HHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred hHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence 4545533 44455676677766544 55567777777566665443
No 261
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.38 E-value=0.0096 Score=47.44 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhCCCEEEEECCCCCC----C-----CccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcE
Q 020073 172 IGLQVAKRLQAFGCNVLYNSRSKKP----V-----PYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGI 242 (331)
Q Consensus 172 IG~~~A~~l~~~G~~V~~~~~~~~~----~-----~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~ 242 (331)
-+..+++.|+..|++|.+||+.... . +.....++++.++.+|+|+++++.. +-+.+--.+....|+++.+
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~~~~~~~~~~~~~~ 96 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRELDWEEIAKLMRKPPV 96 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGCCGHHHHHHHSCSSEE
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhccCHHHHHHhcCCCCE
Confidence 4678999999999999999998654 1 1233568999999999999998744 4444333445567888999
Q ss_pred EEEc
Q 020073 243 IVNV 246 (331)
Q Consensus 243 lIn~ 246 (331)
+|++
T Consensus 97 iiD~ 100 (106)
T PF03720_consen 97 IIDG 100 (106)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9997
No 262
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.37 E-value=0.01 Score=56.13 Aligned_cols=55 Identities=24% Similarity=0.274 Sum_probs=41.1
Q ss_pred EEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-----C---------Cc--c--ccCCHHhhhcCCCEEEEec
Q 020073 164 VGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-----V---------PY--A--FYSNVCELAANSDALIICC 219 (331)
Q Consensus 164 vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-----~---------~~--~--~~~~l~ell~~aDiV~l~~ 219 (331)
|+|||.|.||..+|..+...|. +|+.+|.+.+. . .. . ...+. +.+++||+|+++.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~ 74 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITA 74 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEec
Confidence 6899999999999999886654 99999987543 0 00 0 11343 5689999999987
No 263
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.35 E-value=0.024 Score=55.21 Aligned_cols=144 Identities=17% Similarity=0.222 Sum_probs=93.7
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------------C-----------C--ccccCCHHhhhcCCCEE
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------------V-----------P--YAFYSNVCELAANSDAL 215 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------------~-----------~--~~~~~~l~ell~~aDiV 215 (331)
++|.|+|.|-+|-..+..+..+|.+|+.+|..+.+ . . .....+..++++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 47999999999999999999999999999876543 0 0 12345788899999999
Q ss_pred EEeccCChhhhhhcc--------HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeec-CCCCCCCC----C
Q 020073 216 IICCALTDQTRRMIN--------REVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDV-FENEPYVP----K 282 (331)
Q Consensus 216 ~l~~P~t~~t~~li~--------~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV-~~~EP~~~----~ 282 (331)
++|+|..+...+-+| ++..+.++..+++|+=|.-.+=-.+.+.+-+....-.. -.+| |.+|=+-. .
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~Av~ 159 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSAVY 159 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcchhh
Confidence 999986554344333 33455567669999988877766666666555544322 2333 34444322 1
Q ss_pred ccccCCceEEcCCCCCCcHHHHHHHHHH
Q 020073 283 ELLELDNVVLQPHRAVFTSECFVDLCEL 310 (331)
Q Consensus 283 ~L~~~~nvilTPH~a~~t~~~~~~~~~~ 310 (331)
..+..+++++ |..+..+...+.++
T Consensus 160 D~~~PdRIVi----G~~~~~a~~~~~el 183 (414)
T COG1004 160 DFLYPDRIVI----GVRSERAAAVLREL 183 (414)
T ss_pred hccCCCeEEE----ccCChhHHHHHHHH
Confidence 3555667774 44444433333333
No 264
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=96.34 E-value=0.0077 Score=50.40 Aligned_cols=86 Identities=17% Similarity=0.300 Sum_probs=52.3
Q ss_pred EEEEecChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEE
Q 020073 164 VGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGII 243 (331)
Q Consensus 164 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~l 243 (331)
+.|+|.|.+|+++++.++.+|++|+++|+.++. +..++-+. +.+.. . +. +.+ .+.+.+.+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~------------~~~~~~~~-~~~~~-~---~~--~~~-~~~~~t~V 60 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER------------FPEADEVI-CIPPD-D---IL--EDL-EIDPNTAV 60 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-------------TTSSEEE-CSHHH-H---HH--HHC--S-TT-EE
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc------------cCCCCccE-ecChH-H---HH--hcc-CCCCCeEE
Confidence 469999999999999999999999999876432 12344322 22211 1 11 111 35666666
Q ss_pred EEcCCCCccCHHHHHHHHHhCCceEEEe
Q 020073 244 VNVGRGAVIDENEMVRCLVRGEIAGAGL 271 (331)
Q Consensus 244 In~srg~~vd~~al~~aL~~~~i~ga~l 271 (331)
| ++++.-.|.++|..+|++ ...+.|+
T Consensus 61 v-~th~h~~D~~~L~~~l~~-~~~YiG~ 86 (136)
T PF13478_consen 61 V-MTHDHELDAEALEAALAS-PARYIGL 86 (136)
T ss_dssp E---S-CCCHHHHHHHHTTS-S-SEEEE
T ss_pred E-EcCCchhHHHHHHHHHcC-CCCEEEe
Confidence 6 889999999999999988 4544554
No 265
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.32 E-value=0.022 Score=56.31 Aligned_cols=86 Identities=21% Similarity=0.266 Sum_probs=63.5
Q ss_pred cCCCceEEEEec----------ChHHHHHHHHHhhCCCEEEEECCCCCCC---CccccCCHHhhhcCCCEEEEeccCChh
Q 020073 158 KLGGKRVGIVGL----------GNIGLQVAKRLQAFGCNVLYNSRSKKPV---PYAFYSNVCELAANSDALIICCALTDQ 224 (331)
Q Consensus 158 ~l~g~~vgIiG~----------G~IG~~~A~~l~~~G~~V~~~~~~~~~~---~~~~~~~l~ell~~aDiV~l~~P~t~~ 224 (331)
.+.|++|+|+|+ .+-...+++.|...|.+|.+||+..... ......+++++++++|+|+++.+.. +
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~ad~~v~~t~~~-~ 388 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPLIDDLEEALKGADALVILTDHD-E 388 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcccCCCHHHHHhCCCEEEEecCCH-H
Confidence 368999999998 5678899999999999999999975441 1112468899999999999998654 3
Q ss_pred hhhhccHHHHhc-CCCCcEEEEc
Q 020073 225 TRRMINREVMLA-LGKEGIIVNV 246 (331)
Q Consensus 225 t~~li~~~~l~~-mk~ga~lIn~ 246 (331)
.+. ++-+.+.. |+ ..+++++
T Consensus 389 ~~~-~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 389 FKD-LDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred Hhc-cCHHHHHHhcC-CCEEEeC
Confidence 333 34444444 54 4578874
No 266
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.32 E-value=0.01 Score=58.66 Aligned_cols=104 Identities=18% Similarity=0.241 Sum_probs=68.4
Q ss_pred CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCC---Cc---cccCCHHhhhcCCCEEEEeccCChhhh--------
Q 020073 161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV---PY---AFYSNVCELAANSDALIICCALTDQTR-------- 226 (331)
Q Consensus 161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~---~~---~~~~~l~ell~~aDiV~l~~P~t~~t~-------- 226 (331)
.++|.|||+|.+|.++|+.|+..|.+|.++|++.... .. ......+....++|+|+.+.+..+...
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~ 82 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS 82 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence 4689999999999999999999999999999765431 10 111223334577998887764432111
Q ss_pred --hhccHHHH--hc--C-CCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073 227 --RMINREVM--LA--L-GKEGIIVNVGRGAVIDENEMVRCLVRG 264 (331)
Q Consensus 227 --~li~~~~l--~~--m-k~ga~lIn~srg~~vd~~al~~aL~~~ 264 (331)
.+++...+ .. + ....+-|--+-|+.-..+-+...|+..
T Consensus 83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~ 127 (418)
T PRK00683 83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRL 127 (418)
T ss_pred CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHc
Confidence 12333222 11 2 223577888889988888888888764
No 267
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.31 E-value=0.015 Score=56.15 Aligned_cols=88 Identities=17% Similarity=0.248 Sum_probs=56.9
Q ss_pred ceEEEEec-ChHHHHHHHHHhhC-CCEEE-EECCCC--CC-C----C---c---cccC--CHHhhhcCCCEEEEeccCCh
Q 020073 162 KRVGIVGL-GNIGLQVAKRLQAF-GCNVL-YNSRSK--KP-V----P---Y---AFYS--NVCELAANSDALIICCALTD 223 (331)
Q Consensus 162 ~~vgIiG~-G~IG~~~A~~l~~~-G~~V~-~~~~~~--~~-~----~---~---~~~~--~l~ell~~aDiV~l~~P~t~ 223 (331)
.+|+|+|. |.+|+.+++.|... +.++. .+++.. .+ . + . ..+. +.++++.++|+|++|+|..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~- 79 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG- 79 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence 37999997 99999999999976 66777 334332 11 1 1 0 0122 4456667899999999955
Q ss_pred hhhhhccHHHHhcCCCCcEEEEcCCCCccCH
Q 020073 224 QTRRMINREVMLALGKEGIIVNVGRGAVIDE 254 (331)
Q Consensus 224 ~t~~li~~~~l~~mk~ga~lIn~srg~~vd~ 254 (331)
....+.. .. .+.|..+|+.|-.--.+.
T Consensus 80 ~s~~~~~-~~---~~~G~~VIDlS~~fR~~~ 106 (346)
T TIGR01850 80 VSAELAP-EL---LAAGVKVIDLSADFRLKD 106 (346)
T ss_pred HHHHHHH-HH---HhCCCEEEeCChhhhcCC
Confidence 2233321 11 257899999986555553
No 268
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.30 E-value=0.026 Score=53.67 Aligned_cols=60 Identities=20% Similarity=0.316 Sum_probs=48.9
Q ss_pred CCCceEEEEec---ChHHHHHHHHHhhCCCEEEEECCCCCC-C---CccccCCHHhhhcCCCEEEEe
Q 020073 159 LGGKRVGIVGL---GNIGLQVAKRLQAFGCNVLYNSRSKKP-V---PYAFYSNVCELAANSDALIIC 218 (331)
Q Consensus 159 l~g~~vgIiG~---G~IG~~~A~~l~~~G~~V~~~~~~~~~-~---~~~~~~~l~ell~~aDiV~l~ 218 (331)
+.|++|++||= +++..+++..+..||++|.+..+..-. . ......+++++++++|+|...
T Consensus 154 l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~aDvvyt~ 220 (305)
T PRK00856 154 LEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIEDADVVMML 220 (305)
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCCCCEEEEC
Confidence 78999999996 699999999999999999988765422 1 123467899999999998874
No 269
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.30 E-value=0.051 Score=54.38 Aligned_cols=108 Identities=19% Similarity=0.251 Sum_probs=75.8
Q ss_pred CCCceEEEEec----ChHHHHHHHHHhhCCC--EEEEECCCCCC-CCccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073 159 LGGKRVGIVGL----GNIGLQVAKRLQAFGC--NVLYNSRSKKP-VPYAFYSNVCELAANSDALIICCALTDQTRRMINR 231 (331)
Q Consensus 159 l~g~~vgIiG~----G~IG~~~A~~l~~~G~--~V~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~ 231 (331)
++=++|+|||. |++|..+.+.++..|+ +|+.+++.... .+...+.+++++-...|++++++|.. .+...+.+
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~~-~~~~~l~e 83 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPAK-YVPQVVEE 83 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCHH-HHHHHHHH
Confidence 45578999999 8899999999998887 78888887655 45566789999988899999999944 44445532
Q ss_pred HHHhcCCCCcE-EEEcCCCCc-----cCHHHHHHHHHhCCceEE
Q 020073 232 EVMLALGKEGI-IVNVGRGAV-----IDENEMVRCLVRGEIAGA 269 (331)
Q Consensus 232 ~~l~~mk~ga~-lIn~srg~~-----vd~~al~~aL~~~~i~ga 269 (331)
..+ .+-.++ ++.-+-++. -.++++.++.+.+.++-.
T Consensus 84 -~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl 125 (447)
T TIGR02717 84 -CGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL 125 (447)
T ss_pred -HHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence 222 333344 443333332 236778888888776633
No 270
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.30 E-value=0.011 Score=56.53 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=45.7
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC--------CCc-------cccCCHHhhhcCCCEEEEecc
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP--------VPY-------AFYSNVCELAANSDALIICCA 220 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~--------~~~-------~~~~~l~ell~~aDiV~l~~P 220 (331)
++++|+|||.|.+|..+|-.+...|. ++..+|.+... ... ....+-.+.+++||+|+++.-
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag 82 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence 46799999999999999999988787 79999986653 000 001123456899999999873
No 271
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.29 E-value=0.014 Score=55.02 Aligned_cols=38 Identities=16% Similarity=0.279 Sum_probs=33.8
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCC
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKK 195 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~ 195 (331)
++.|+++.|+|.|..+++++-.+...|. +|.+++|+..
T Consensus 121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 121 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 4678999999999999999999988897 7999999853
No 272
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.29 E-value=0.08 Score=49.52 Aligned_cols=179 Identities=17% Similarity=0.169 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhC----CC-------EEE
Q 020073 120 AADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAF----GC-------NVL 188 (331)
Q Consensus 120 vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~----G~-------~V~ 188 (331)
+|=.+++-+|+.+|- .|++|...++.|+|.|.-|-.+|+.+... |. +++
T Consensus 4 Ta~V~lAgllnAlk~--------------------~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~ 63 (279)
T cd05312 4 TAAVALAGLLAALRI--------------------TGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIW 63 (279)
T ss_pred HHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEE
Confidence 455677777776653 24568899999999999999999999776 77 788
Q ss_pred EECCCCC------CC-----Cc----c--ccCCHHhhhc--CCCEEEEeccCChhhhhhccHHHHhcCC---CCcEEEEc
Q 020073 189 YNSRSKK------PV-----PY----A--FYSNVCELAA--NSDALIICCALTDQTRRMINREVMLALG---KEGIIVNV 246 (331)
Q Consensus 189 ~~~~~~~------~~-----~~----~--~~~~l~ell~--~aDiV~l~~P~t~~t~~li~~~~l~~mk---~ga~lIn~ 246 (331)
.+|+..- .. .+ . ...+|.|+++ ++|+++-+- ..-++|+++.++.|. +..++.=.
T Consensus 64 ~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaL 139 (279)
T cd05312 64 LVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPIIFAL 139 (279)
T ss_pred EEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEEEEC
Confidence 8887531 00 00 1 2348999999 899888652 134799999999998 78999999
Q ss_pred CCCCccCHHHHHHHHH--hCC-ceEEEeecCCCCCCCC-CccccCCceEEcCCCCCCcH-----HHHHHHHHHHHHHHHH
Q 020073 247 GRGAVIDENEMVRCLV--RGE-IAGAGLDVFENEPYVP-KELLELDNVVLQPHRAVFTS-----ECFVDLCELAVGNLEA 317 (331)
Q Consensus 247 srg~~vd~~al~~aL~--~~~-i~ga~lDV~~~EP~~~-~~L~~~~nvilTPH~a~~t~-----~~~~~~~~~~~~nl~~ 317 (331)
|...---|-.-.++.+ +|+ |.+.|.-.-..+..-. ...=...|+++-|=++-..- .--+.|...+++-|.+
T Consensus 140 SNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~ 219 (279)
T cd05312 140 SNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALAS 219 (279)
T ss_pred CCcCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHH
Confidence 8876633433333333 344 6555532111111000 01224568999998764322 2235677777777776
Q ss_pred HHcCC
Q 020073 318 LFSNQ 322 (331)
Q Consensus 318 ~~~g~ 322 (331)
+..-+
T Consensus 220 ~~~~~ 224 (279)
T cd05312 220 LVTDE 224 (279)
T ss_pred hCCcc
Confidence 65433
No 273
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.27 E-value=0.08 Score=48.84 Aligned_cols=175 Identities=15% Similarity=0.110 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCC-----------EEE
Q 020073 120 AADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGC-----------NVL 188 (331)
Q Consensus 120 vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-----------~V~ 188 (331)
+|=.+++-+|+.+|- .|++|...++.|+|.|.-|-.+|+.+...+. +++
T Consensus 4 TaaV~lAgllnAlk~--------------------~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~ 63 (254)
T cd00762 4 TASVAVAGLLAALKV--------------------TKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIW 63 (254)
T ss_pred hHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEE
Confidence 455677777776662 2456889999999999999999999987655 588
Q ss_pred EECCCCC------C-----CC---c----cccCCHHhhhc--CCCEEEEeccCChhhhhhccHHHHhcCC---CCcEEEE
Q 020073 189 YNSRSKK------P-----VP---Y----AFYSNVCELAA--NSDALIICCALTDQTRRMINREVMLALG---KEGIIVN 245 (331)
Q Consensus 189 ~~~~~~~------~-----~~---~----~~~~~l~ell~--~aDiV~l~~P~t~~t~~li~~~~l~~mk---~ga~lIn 245 (331)
.+|+..- . .. + ....+|.|+++ ++|+++-.. ...+++.++.+..|. +..++.=
T Consensus 64 ~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFa 139 (254)
T cd00762 64 XVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFA 139 (254)
T ss_pred EECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEE
Confidence 8876521 0 01 1 11248999999 999888642 235799999999998 8899998
Q ss_pred cCCCCcc---CHHHHHHHHHhCCceEEEeecCCCCCCCCCc---cccCCceEEcCCCCCCcHH-----HHHHHHHHHHHH
Q 020073 246 VGRGAVI---DENEMVRCLVRGEIAGAGLDVFENEPYVPKE---LLELDNVVLQPHRAVFTSE-----CFVDLCELAVGN 314 (331)
Q Consensus 246 ~srg~~v---d~~al~~aL~~~~i~ga~lDV~~~EP~~~~~---L~~~~nvilTPH~a~~t~~-----~~~~~~~~~~~n 314 (331)
.|...-- ..++.+++=+...|.+.|.-.+..+- +.. .-...|+++-|=++-.... --+.|...+++-
T Consensus 140 LSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~--~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~a 217 (254)
T cd00762 140 LSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVEL--NGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEA 217 (254)
T ss_pred CCCcCCccccCHHHHHhhcCCCEEEEECCCCCCccc--CCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHH
Confidence 8887763 33444443333345544442221111 111 2256699999987653322 235666666666
Q ss_pred HHHHHc
Q 020073 315 LEALFS 320 (331)
Q Consensus 315 l~~~~~ 320 (331)
|-.+..
T Consensus 218 LA~~v~ 223 (254)
T cd00762 218 IASSVT 223 (254)
T ss_pred HHhhCC
Confidence 666553
No 274
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.27 E-value=0.0071 Score=54.38 Aligned_cols=89 Identities=27% Similarity=0.281 Sum_probs=61.8
Q ss_pred CCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--------CC--ccc-cCCHHhhhcCCCEEEEeccC
Q 020073 153 YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--------VP--YAF-YSNVCELAANSDALIICCAL 221 (331)
Q Consensus 153 ~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--------~~--~~~-~~~l~ell~~aDiV~l~~P~ 221 (331)
+|..-++.|++|.|||.|.+|..=++.+...|.+|+++++...+ .. ... .-+. +.+..+++|+.+++.
T Consensus 4 lPl~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~-~~~~~~~lviaAt~d 82 (210)
T COG1648 4 LPLFLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDA-EDLDDAFLVIAATDD 82 (210)
T ss_pred cceEEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccCh-hhhcCceEEEEeCCC
Confidence 34556799999999999999999999999999999999887633 01 000 1122 234448888888764
Q ss_pred ChhhhhhccHHHHhcCCCCcEEEEcC
Q 020073 222 TDQTRRMINREVMLALGKEGIIVNVG 247 (331)
Q Consensus 222 t~~t~~li~~~~l~~mk~ga~lIn~s 247 (331)
.+ +|+..+...++-.++||+.
T Consensus 83 ~~-----ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 83 EE-----LNERIAKAARERRILVNVV 103 (210)
T ss_pred HH-----HHHHHHHHHHHhCCceecc
Confidence 32 3455555555556777774
No 275
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=96.26 E-value=0.0092 Score=60.97 Aligned_cols=39 Identities=28% Similarity=0.416 Sum_probs=35.2
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK 195 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~ 195 (331)
.++.++++.|+|.|.+|++++..|...|++|++++|+.+
T Consensus 375 ~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e 413 (529)
T PLN02520 375 SPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYE 413 (529)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 357899999999999999999999999999999998754
No 276
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=96.24 E-value=0.097 Score=50.38 Aligned_cols=89 Identities=11% Similarity=0.001 Sum_probs=62.5
Q ss_pred cCCCceEEEEecC--hHHHHHHHHHhhCCCEEEEECCCCCC-C--------------C--ccccCCHHhhhcCCCEEEEe
Q 020073 158 KLGGKRVGIVGLG--NIGLQVAKRLQAFGCNVLYNSRSKKP-V--------------P--YAFYSNVCELAANSDALIIC 218 (331)
Q Consensus 158 ~l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~-~--------------~--~~~~~~l~ell~~aDiV~l~ 218 (331)
.+.|++|++||=+ ++.++++..+..+|++|.+..+..-. . + +....+++++++++|+|..-
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~ 232 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD 232 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4789999999975 67888999999999999988764211 0 1 12357899999999999873
Q ss_pred c----cC---Chhh------hhhccHHHHhcC-CCCcEEEEc
Q 020073 219 C----AL---TDQT------RRMINREVMLAL-GKEGIIVNV 246 (331)
Q Consensus 219 ~----P~---t~~t------~~li~~~~l~~m-k~ga~lIn~ 246 (331)
. .. ..+. ...++++.++.. |++++|.-+
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~ 274 (334)
T PRK01713 233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHC 274 (334)
T ss_pred ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECC
Confidence 2 10 0011 123677888875 688888765
No 277
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=96.23 E-value=0.0096 Score=58.00 Aligned_cols=57 Identities=25% Similarity=0.360 Sum_probs=44.0
Q ss_pred CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCcc---cc---CCHHhhhcCCCEEEE
Q 020073 161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYA---FY---SNVCELAANSDALII 217 (331)
Q Consensus 161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~---~~---~~l~ell~~aDiV~l 217 (331)
+++|||||.|..|+.+++.++.+|++|+++++.+.. .... .+ ..+.++++.+|+|+.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 478999999999999999999999999999987544 1100 11 236678888998764
No 278
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.20 E-value=0.023 Score=53.85 Aligned_cols=107 Identities=15% Similarity=0.181 Sum_probs=68.9
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------C-Ccc--------c---cCCHHhhhcCCCEEEEeccCCh
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------V-PYA--------F---YSNVCELAANSDALIICCALTD 223 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~-~~~--------~---~~~l~ell~~aDiV~l~~P~t~ 223 (331)
++|+|+|.|.||..+|-.|...|.+|.++.|.... . +.. . .....+.....|+|++|+=..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~- 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY- 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence 47999999999999999999999999998886421 0 110 0 011122346789999996422
Q ss_pred hhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEe
Q 020073 224 QTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGL 271 (331)
Q Consensus 224 ~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~l 271 (331)
.+...+ +.....+.+++.+|-.--| +-.++.+.+.+...++.++..
T Consensus 82 ~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~~ 127 (305)
T PRK05708 82 DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFASS 127 (305)
T ss_pred hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEEe
Confidence 233333 3344556778877666433 345667777876666655544
No 279
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.19 E-value=0.033 Score=55.36 Aligned_cols=107 Identities=18% Similarity=0.239 Sum_probs=71.7
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----------CCcc--ccCCHHhhhcCCCEEEEeccCChh
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------VPYA--FYSNVCELAANSDALIICCALTDQ 224 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------~~~~--~~~~l~ell~~aDiV~l~~P~t~~ 224 (331)
++.++++.|+|.|.+|.++|+.|...|++|+++++.... .+.. .....++....+|+|+.+.-..+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence 467999999999999999999999999999999987522 0111 112234566789999987532222
Q ss_pred hhhh----------cc-HHHHhc-CCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073 225 TRRM----------IN-REVMLA-LGKEGIIVNVGRGAVIDENEMVRCLVRG 264 (331)
Q Consensus 225 t~~l----------i~-~~~l~~-mk~ga~lIn~srg~~vd~~al~~aL~~~ 264 (331)
..-+ +. .+.+.+ .+...+-|--+.|+....+-|...|+..
T Consensus 82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~ 133 (450)
T PRK14106 82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNA 133 (450)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHc
Confidence 1111 11 111222 2334677777889999888888888763
No 280
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=96.16 E-value=0.0063 Score=60.44 Aligned_cols=59 Identities=12% Similarity=0.178 Sum_probs=44.1
Q ss_pred eEEEEecChHHHHHHH---HH---hhCCCEEEEECCCCCC--------------C----CccccCCHHhhhcCCCEEEEe
Q 020073 163 RVGIVGLGNIGLQVAK---RL---QAFGCNVLYNSRSKKP--------------V----PYAFYSNVCELAANSDALIIC 218 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~---~l---~~~G~~V~~~~~~~~~--------------~----~~~~~~~l~ell~~aDiV~l~ 218 (331)
+|+|||.|++|...+- .+ ...|.+|..+|+.++. . ......++.++++.||+|+.+
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~a 81 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINT 81 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEe
Confidence 6999999999998555 22 3346799999987643 0 011245788999999999999
Q ss_pred ccC
Q 020073 219 CAL 221 (331)
Q Consensus 219 ~P~ 221 (331)
+|.
T Consensus 82 i~~ 84 (423)
T cd05297 82 IQV 84 (423)
T ss_pred eEe
Confidence 983
No 281
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.16 E-value=0.05 Score=54.20 Aligned_cols=105 Identities=21% Similarity=0.246 Sum_probs=68.8
Q ss_pred CccCCCceEEEEecChHHHHHHHHHhhCCCEEE-EECCCCC---CCCc----------------------------cccC
Q 020073 156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL-YNSRSKK---PVPY----------------------------AFYS 203 (331)
Q Consensus 156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~-~~~~~~~---~~~~----------------------------~~~~ 203 (331)
+.++.|+||.|=|+|++|+.+|+.|..+|++|+ +.|.+.. +.+. ..+.
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~ 311 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV 311 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence 457999999999999999999999999999998 4444310 0000 0001
Q ss_pred CHHhhh-cCCCEEEEeccCChhhhhhccHHHHhcC-CCCc-EEEEcCCCCccCHHHHHHHHHhCCce
Q 020073 204 NVCELA-ANSDALIICCALTDQTRRMINREVMLAL-GKEG-IIVNVGRGAVIDENEMVRCLVRGEIA 267 (331)
Q Consensus 204 ~l~ell-~~aDiV~l~~P~t~~t~~li~~~~l~~m-k~ga-~lIn~srg~~vd~~al~~aL~~~~i~ 267 (331)
+-++++ -.||+.+-| ++.+.|+.+..+.+ +.++ +++-.+-+.+-. +-.+.|+++.|.
T Consensus 312 ~~~~~~~~~cDI~iPc-----A~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~--eA~~~L~~~GI~ 371 (454)
T PTZ00079 312 PGKKPWEVPCDIAFPC-----ATQNEINLEDAKLLIKNGCKLVAEGANMPTTI--EATHLFKKNGVI 371 (454)
T ss_pred CCcCcccCCccEEEec-----cccccCCHHHHHHHHHcCCeEEEecCCCCCCH--HHHHHHHHCCcE
Confidence 112222 358887766 36778888877755 4444 566666677654 345677777765
No 282
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.15 E-value=0.011 Score=54.45 Aligned_cols=79 Identities=27% Similarity=0.368 Sum_probs=54.3
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------CC-----------------c--cc-
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------VP-----------------Y--AF- 201 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~~-----------------~--~~- 201 (331)
..|++++|+|||+|.+|..+|+.|...|. ++.++|...-. .+ . ..
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~ 107 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI 107 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 46899999999999999999999999898 67776643110 00 0 00
Q ss_pred -----cCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhc
Q 020073 202 -----YSNVCELAANSDALIICCALTDQTRRMINREVMLA 236 (331)
Q Consensus 202 -----~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~ 236 (331)
..+++++++++|+|+.|+- +.+++..+++.....
T Consensus 108 ~~~i~~~~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~ 146 (245)
T PRK05690 108 NARLDDDELAALIAGHDLVLDCTD-NVATRNQLNRACFAA 146 (245)
T ss_pred eccCCHHHHHHHHhcCCEEEecCC-CHHHHHHHHHHHHHh
Confidence 0124567888898888873 556777776655444
No 283
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.10 E-value=0.018 Score=52.76 Aligned_cols=78 Identities=26% Similarity=0.360 Sum_probs=53.9
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------CC----------------c---c--
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------VP----------------Y---A-- 200 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~~----------------~---~-- 200 (331)
..|++++|.|+|+|.+|..+|+.|...|. +++.+|...-. .+ . .
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~ 99 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI 99 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 35889999999999999999999999898 67777653211 00 0 0
Q ss_pred --cc--CCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073 201 --FY--SNVCELAANSDALIICCALTDQTRRMINREVML 235 (331)
Q Consensus 201 --~~--~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~ 235 (331)
.. .++.++++++|+|+.|+ .+.+++..+++...+
T Consensus 100 ~~~i~~~~~~~~~~~~DlVvd~~-D~~~~r~~ln~~~~~ 137 (240)
T TIGR02355 100 NAKLDDAELAALIAEHDIVVDCT-DNVEVRNQLNRQCFA 137 (240)
T ss_pred eccCCHHHHHHHhhcCCEEEEcC-CCHHHHHHHHHHHHH
Confidence 00 12456778888888776 355677777665544
No 284
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.09 E-value=0.011 Score=59.24 Aligned_cols=90 Identities=20% Similarity=0.151 Sum_probs=61.0
Q ss_pred CCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CC-ccc--cCCHHhhhcCCCEEEEeccCC
Q 020073 153 YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VP-YAF--YSNVCELAANSDALIICCALT 222 (331)
Q Consensus 153 ~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~-~~~--~~~l~ell~~aDiV~l~~P~t 222 (331)
+|..-+|+|++|.|||.|.++..=++.|..+|++|+++++...+ .+ ... ..-..+.+..+++|+.++...
T Consensus 4 ~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~ 83 (457)
T PRK10637 4 LPIFCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDD 83 (457)
T ss_pred eceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCH
Confidence 45556899999999999999999999999999999999876443 01 110 011234678899888886533
Q ss_pred hhhhhhccHHHHhcCCCCcEEEEcC
Q 020073 223 DQTRRMINREVMLALGKEGIIVNVG 247 (331)
Q Consensus 223 ~~t~~li~~~~l~~mk~ga~lIn~s 247 (331)
. +|++.....+...+++|++
T Consensus 84 ~-----~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 84 A-----VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred H-----HhHHHHHHHHHcCcEEEEC
Confidence 2 3444444444445666654
No 285
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.08 E-value=0.0093 Score=51.34 Aligned_cols=60 Identities=23% Similarity=0.169 Sum_probs=47.2
Q ss_pred EEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC-C---C-------ccccCCHHhhhcCCCEEEEeccCCh
Q 020073 164 VGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP-V---P-------YAFYSNVCELAANSDALIICCALTD 223 (331)
Q Consensus 164 vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~-~---~-------~~~~~~l~ell~~aDiV~l~~P~t~ 223 (331)
|.|+| .|.+|+.+++.|...|.+|++..|++.+ . + .....++.++++.+|.|+.+++.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~ 72 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPP 72 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence 67899 4999999999999999999999988764 1 1 1112356788999999999997543
No 286
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=96.08 E-value=0.15 Score=48.51 Aligned_cols=88 Identities=15% Similarity=0.156 Sum_probs=61.8
Q ss_pred CCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCC------------C--ccccCCHHhhhcCCCEEEEec----
Q 020073 159 LGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPV------------P--YAFYSNVCELAANSDALIICC---- 219 (331)
Q Consensus 159 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~------------~--~~~~~~l~ell~~aDiV~l~~---- 219 (331)
+.|.+|+++|- +++.++++..+..+|++|.+..+..-.. + .....+++++++++|+|..-.
T Consensus 150 l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~ 229 (304)
T PRK00779 150 LKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSM 229 (304)
T ss_pred cCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCcccc
Confidence 67899999996 8899999999999999999887643211 1 123478999999999998742
Q ss_pred cCCh---h-----hhhhccHHHHhcCCCCcEEEEc
Q 020073 220 ALTD---Q-----TRRMINREVMLALGKEGIIVNV 246 (331)
Q Consensus 220 P~t~---~-----t~~li~~~~l~~mk~ga~lIn~ 246 (331)
.... + -..-++++.++.+|+++++.-+
T Consensus 230 ~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHp 264 (304)
T PRK00779 230 GQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHC 264 (304)
T ss_pred ccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecC
Confidence 1100 0 1223466677777777666654
No 287
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=96.02 E-value=0.16 Score=48.89 Aligned_cols=89 Identities=13% Similarity=0.142 Sum_probs=63.8
Q ss_pred cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC-----C----------C--ccccCCHHhhhcCCCEEEEec
Q 020073 158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP-----V----------P--YAFYSNVCELAANSDALIICC 219 (331)
Q Consensus 158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~----------~--~~~~~~l~ell~~aDiV~l~~ 219 (331)
.+.|.+|++||= .++..+++..+..+|++|.++.+..-. . + +....+++++++++|+|..-.
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~ 230 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDV 230 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence 488999999995 788899999999999999988765321 0 1 123478999999999999832
Q ss_pred -----cCC--h-h------hhhhccHHHHhcCCCCcEEEEc
Q 020073 220 -----ALT--D-Q------TRRMINREVMLALGKEGIIVNV 246 (331)
Q Consensus 220 -----P~t--~-~------t~~li~~~~l~~mk~ga~lIn~ 246 (331)
... . + ....++++.++.+|++++|.-+
T Consensus 231 w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHp 271 (338)
T PRK02255 231 WYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHC 271 (338)
T ss_pred cHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCC
Confidence 110 0 0 0144677788778887777665
No 288
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.00 E-value=0.006 Score=51.28 Aligned_cols=58 Identities=24% Similarity=0.381 Sum_probs=44.2
Q ss_pred ceEEEEec-ChHHHHHHHHHhhCC--CEEEEECCCCCC--------------C--CccccCCHHhhhcCCCEEEEec
Q 020073 162 KRVGIVGL-GNIGLQVAKRLQAFG--CNVLYNSRSKKP--------------V--PYAFYSNVCELAANSDALIICC 219 (331)
Q Consensus 162 ~~vgIiG~-G~IG~~~A~~l~~~G--~~V~~~~~~~~~--------------~--~~~~~~~l~ell~~aDiV~l~~ 219 (331)
.+|+|||. |.+|+.+|-.|...+ -+++.+|+.... . .........+.+++||+|+++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvita 77 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITA 77 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEec
Confidence 37999999 999999999987544 489999987533 0 0111235678899999999988
No 289
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.99 E-value=0.091 Score=50.11 Aligned_cols=89 Identities=13% Similarity=0.137 Sum_probs=66.7
Q ss_pred HHHHHHHHHhhCCCEEEEECCCCCC------------------------CC-------------ccccCC--HHhhhcCC
Q 020073 172 IGLQVAKRLQAFGCNVLYNSRSKKP------------------------VP-------------YAFYSN--VCELAANS 212 (331)
Q Consensus 172 IG~~~A~~l~~~G~~V~~~~~~~~~------------------------~~-------------~~~~~~--l~ell~~a 212 (331)
||..+|..+...|++|+.+|++++. .+ .....+ +.+++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 6889999999999999999988731 00 001112 55788999
Q ss_pred CEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 020073 213 DALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLV 262 (331)
Q Consensus 213 DiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~ 262 (331)
|+|+-++|.+.+.+.-+-++..+.++++++|... -+.+....|.+.+.
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSn--tS~~~~~~la~~~~ 128 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIAST--TSTFLVTDLQRHVA 128 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEc--cccCCHHHHHhhcC
Confidence 9999999999998888777777889999998544 44456666777664
No 290
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=95.96 E-value=0.14 Score=54.26 Aligned_cols=176 Identities=15% Similarity=0.170 Sum_probs=114.7
Q ss_pred CCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCC
Q 020073 105 RGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFG 184 (331)
Q Consensus 105 ~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G 184 (331)
.+|+|.|. +.+ -+|=.+++.+++.+|- .|+++...++.|.|.|.-|-.+|+.+...|
T Consensus 152 ~~ip~f~D-D~~--GTa~v~lA~l~na~~~--------------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G 208 (752)
T PRK07232 152 MDIPVFHD-DQH--GTAIISAAALLNALEL--------------------VGKKIEDVKIVVSGAGAAAIACLNLLVALG 208 (752)
T ss_pred cCCCeecc-ccc--hHHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECccHHHHHHHHHHHHcC
Confidence 36888887 333 3555677777776653 345788999999999999999999999989
Q ss_pred C---EEEEECCCC-------CCC--------CccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEc
Q 020073 185 C---NVLYNSRSK-------KPV--------PYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNV 246 (331)
Q Consensus 185 ~---~V~~~~~~~-------~~~--------~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~ 246 (331)
. +|+.+|+.. ... ......+|.|+++.+|+++-. . +.+.++++.+..|.+..++.=.
T Consensus 209 ~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~~v~~M~~~piifal 283 (752)
T PRK07232 209 AKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGL-S----AAGVLTPEMVKSMADNPIIFAL 283 (752)
T ss_pred CCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCCEEEec
Confidence 8 788888652 100 001235899999999977754 2 2589999999999999999988
Q ss_pred CCCCccCHHHHHHHHHh--CCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcH-----HHHHHHHHHHHHHHHHHH
Q 020073 247 GRGAVIDENEMVRCLVR--GEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTS-----ECFVDLCELAVGNLEALF 319 (331)
Q Consensus 247 srg~~vd~~al~~aL~~--~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~-----~~~~~~~~~~~~nl~~~~ 319 (331)
|.... |-.-.+|.+. |.|.+.|- ...|. +..|+++-|-++-..- .-.+.|...+++-|-...
T Consensus 284 sNP~~--E~~p~~a~~~~~~~i~atGr---s~~pn------Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~ 352 (752)
T PRK07232 284 ANPDP--EITPEEAKAVRPDAIIATGR---SDYPN------QVNNVLCFPYIFRGALDVGATTINEEMKLAAVRAIAELA 352 (752)
T ss_pred CCCCc--cCCHHHHHHhcCCEEEEECC---cCCCC------cccceeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhc
Confidence 88764 2222233333 34554441 12232 2358888887653222 123344444445444433
No 291
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=95.95 E-value=0.035 Score=52.91 Aligned_cols=91 Identities=19% Similarity=0.179 Sum_probs=64.3
Q ss_pred CCCceEEEEecChHHHHHHHHHhh-------CCCEEEEECCCC---C---C---------------------CCccccCC
Q 020073 159 LGGKRVGIVGLGNIGLQVAKRLQA-------FGCNVLYNSRSK---K---P---------------------VPYAFYSN 204 (331)
Q Consensus 159 l~g~~vgIiG~G~IG~~~A~~l~~-------~G~~V~~~~~~~---~---~---------------------~~~~~~~~ 204 (331)
..-++|+|||.|+-|+++|+.+.. |..+|..|-+.. . . .......+
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d 98 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD 98 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence 344789999999999999999863 334554442211 0 0 01123468
Q ss_pred HHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCc
Q 020073 205 VCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAV 251 (331)
Q Consensus 205 l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~ 251 (331)
+.+++.+||+++..+|.+ .+..++ ++...+.|+++..|...-|=-
T Consensus 99 l~ea~~dADilvf~vPhQ-f~~~ic-~~l~g~vk~~~~aISL~KG~e 143 (372)
T KOG2711|consen 99 LVEAAKDADILVFVVPHQ-FIPRIC-EQLKGYVKPGATAISLIKGVE 143 (372)
T ss_pred HHHHhccCCEEEEeCChh-hHHHHH-HHHhcccCCCCeEEEeeccee
Confidence 999999999999999955 444444 667788999999999887743
No 292
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.95 E-value=0.0064 Score=59.37 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=49.8
Q ss_pred EEEEecChHHHHHHHHHhhCC-C-EEEEECCCCCC-----C------------CccccCCHHhhhcCCCEEEEeccCChh
Q 020073 164 VGIVGLGNIGLQVAKRLQAFG-C-NVLYNSRSKKP-----V------------PYAFYSNVCELAANSDALIICCALTDQ 224 (331)
Q Consensus 164 vgIiG~G~IG~~~A~~l~~~G-~-~V~~~~~~~~~-----~------------~~~~~~~l~ell~~aDiV~l~~P~t~~ 224 (331)
|+|+|.|.+|+.+++.|...+ + +|++.+|+.++ . +.....+|.++++++|+|+.|+|.. .
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~ 79 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-F 79 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-G
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-h
Confidence 689999999999999998765 4 89999987653 0 0111234788999999999999744 1
Q ss_pred hhhhccHHHHhcCCCCcEEEEcC
Q 020073 225 TRRMINREVMLALGKEGIIVNVG 247 (331)
Q Consensus 225 t~~li~~~~l~~mk~ga~lIn~s 247 (331)
...++ -..++.|.-.||++
T Consensus 80 ~~~v~----~~~i~~g~~yvD~~ 98 (386)
T PF03435_consen 80 GEPVA----RACIEAGVHYVDTS 98 (386)
T ss_dssp HHHHH----HHHHHHT-EEEESS
T ss_pred hHHHH----HHHHHhCCCeeccc
Confidence 11111 11135566677743
No 293
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.93 E-value=0.041 Score=49.50 Aligned_cols=37 Identities=32% Similarity=0.463 Sum_probs=32.5
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS 193 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~ 193 (331)
..|++++|+|||+|.+|..+|+.|...|. ++..+|..
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35889999999999999999999998898 58877765
No 294
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.93 E-value=0.025 Score=54.58 Aligned_cols=37 Identities=35% Similarity=0.422 Sum_probs=33.3
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS 193 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~ 193 (331)
..|.+++|.|||+|.+|..+|+.|...|. +|..+|..
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35899999999999999999999999999 88888764
No 295
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=95.92 E-value=0.15 Score=49.58 Aligned_cols=61 Identities=13% Similarity=0.175 Sum_probs=46.1
Q ss_pred cCCCceEEEEecC--------hHHHHHHHHHhhCCCEEEEECCCCCC-----C----------C--ccccCCHHhhhcCC
Q 020073 158 KLGGKRVGIVGLG--------NIGLQVAKRLQAFGCNVLYNSRSKKP-----V----------P--YAFYSNVCELAANS 212 (331)
Q Consensus 158 ~l~g~~vgIiG~G--------~IG~~~A~~l~~~G~~V~~~~~~~~~-----~----------~--~~~~~~l~ell~~a 212 (331)
.++|++|+|+|.| ++.++++..+..||++|.+..+..-. . + .....+++++++++
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 3789999999853 45578888899999999988765321 0 1 12357899999999
Q ss_pred CEEEEe
Q 020073 213 DALIIC 218 (331)
Q Consensus 213 DiV~l~ 218 (331)
|+|..-
T Consensus 247 Dvvyt~ 252 (357)
T TIGR03316 247 DIVYPK 252 (357)
T ss_pred CEEEEC
Confidence 999876
No 296
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.91 E-value=0.018 Score=57.11 Aligned_cols=63 Identities=21% Similarity=0.253 Sum_probs=47.9
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCcc-------ccCCHHhh-hcCCCEEEEeccCChh
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYA-------FYSNVCEL-AANSDALIICCALTDQ 224 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~-------~~~~l~el-l~~aDiV~l~~P~t~~ 224 (331)
+++.|+|+|.+|+.+|+.|...|.+|+++++++.. .+.. ....++++ +.++|.|+++++....
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~ 78 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET 78 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence 36899999999999999999999999999886543 1111 11235566 7899999999886543
No 297
>PRK12861 malic enzyme; Reviewed
Probab=95.90 E-value=0.12 Score=54.87 Aligned_cols=176 Identities=15% Similarity=0.163 Sum_probs=115.1
Q ss_pred CcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCC
Q 020073 106 GIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGC 185 (331)
Q Consensus 106 gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~ 185 (331)
.|++.|. +.+ -+|=.+++.+|+.+|- .|+++...+|.|.|.|.-|..+|+.+...|.
T Consensus 157 ~ipvf~D-D~q--GTa~v~lA~llnal~~--------------------~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~ 213 (764)
T PRK12861 157 KIPVFHD-DQH--GTAITVSAAFINGLKV--------------------VGKSIKEVKVVTSGAGAAALACLDLLVDLGL 213 (764)
T ss_pred CCCeecc-ccc--hHHHHHHHHHHHHHHH--------------------hCCChhHcEEEEECHhHHHHHHHHHHHHcCC
Confidence 7899887 334 3555677777876663 3557889999999999999999999999998
Q ss_pred ---EEEEECCCC-------C--C------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcC
Q 020073 186 ---NVLYNSRSK-------K--P------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVG 247 (331)
Q Consensus 186 ---~V~~~~~~~-------~--~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~s 247 (331)
+|+.+|+.. . . .......+|.|+++.+|+++-. . +.+.++++.+..|.+.+++.=.|
T Consensus 214 ~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~eai~~advliG~-S----~~g~ft~e~v~~Ma~~PIIFaLs 288 (764)
T PRK12861 214 PVENIWVTDIEGVVYRGRTTLMDPDKERFAQETDARTLAEVIGGADVFLGL-S----AGGVLKAEMLKAMAARPLILALA 288 (764)
T ss_pred ChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHHHHhcCCEEEEc-C----CCCCCCHHHHHHhccCCEEEECC
Confidence 788888542 1 0 0001235899999999977654 2 25899999999999999999888
Q ss_pred CCCc-cCHHHHHHHHHhCC-ceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcH-----HHHHHHHHHHHHHHHHHHc
Q 020073 248 RGAV-IDENEMVRCLVRGE-IAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTS-----ECFVDLCELAVGNLEALFS 320 (331)
Q Consensus 248 rg~~-vd~~al~~aL~~~~-i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~-----~~~~~~~~~~~~nl~~~~~ 320 (331)
.... +..+..++ ..|+ |.+-|- ...| =+..|+++-|-++-..- .-.+.|...+++-|-.+..
T Consensus 289 NPtpE~~pe~a~~--~~g~aivaTGr---s~~p------nQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~alA~~~~ 357 (764)
T PRK12861 289 NPTPEIFPELAHA--TRDDVVIATGR---SDYP------NQVNNVLCFPYIFRGALDVGATTITREMEIAAVHAIAGLAE 357 (764)
T ss_pred CCCccCCHHHHHh--cCCCEEEEeCC---cCCC------CccceeeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhCC
Confidence 8663 12222222 2344 432211 1112 13458899887764222 2234555555555555443
No 298
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=95.87 E-value=0.19 Score=47.67 Aligned_cols=88 Identities=17% Similarity=0.162 Sum_probs=61.4
Q ss_pred CCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCC---------------C--ccccCCHHhhhcCCCEEEEec-
Q 020073 159 LGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPV---------------P--YAFYSNVCELAANSDALIICC- 219 (331)
Q Consensus 159 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~---------------~--~~~~~~l~ell~~aDiV~l~~- 219 (331)
+.|.+|+++|- +++.++++..+..||++|.+..+..-.. + .....+++++++++|+|..-.
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w 225 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVW 225 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 78999999995 7899999999999999998887643210 1 123468999999999998742
Q ss_pred -cCCh----------hhhhhccHHHHhcCCCCcEEEEc
Q 020073 220 -ALTD----------QTRRMINREVMLALGKEGIIVNV 246 (331)
Q Consensus 220 -P~t~----------~t~~li~~~~l~~mk~ga~lIn~ 246 (331)
.... .....++++.++.+|+++++.-+
T Consensus 226 ~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHp 263 (304)
T TIGR00658 226 VSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHC 263 (304)
T ss_pred ccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECC
Confidence 1000 01224567777777777666544
No 299
>PRK12862 malic enzyme; Reviewed
Probab=95.86 E-value=0.18 Score=53.65 Aligned_cols=175 Identities=15% Similarity=0.155 Sum_probs=115.5
Q ss_pred CcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCC
Q 020073 106 GIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGC 185 (331)
Q Consensus 106 gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~ 185 (331)
+|++.|. +.+ -+|=.+++.+++.+|- .|+.+...+|.|.|.|.-|-.+|+.+...|.
T Consensus 161 ~ip~f~D-D~~--GTa~v~la~l~~a~~~--------------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~ 217 (763)
T PRK12862 161 KIPVFHD-DQH--GTAIIVAAALLNGLKL--------------------VGKDIEDVKLVASGAGAAALACLDLLVSLGV 217 (763)
T ss_pred CCceEec-Ccc--cHHHHHHHHHHHHHHH--------------------hCCChhhcEEEEEChhHHHHHHHHHHHHcCC
Confidence 6899997 333 3556677777876653 3567889999999999999999999999898
Q ss_pred ---EEEEECCCC-------C--C---CCc---cccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcC
Q 020073 186 ---NVLYNSRSK-------K--P---VPY---AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVG 247 (331)
Q Consensus 186 ---~V~~~~~~~-------~--~---~~~---~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~s 247 (331)
+|+.+|+.. . . ..+ ....+|.|+++.+|+++-+- +.+.++++.++.|.+..++.=.|
T Consensus 218 ~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v~~M~~~piifals 292 (763)
T PRK12862 218 KRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGLS-----AAGVLKPEMVKKMAPRPLIFALA 292 (763)
T ss_pred CcccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCCEEEeCC
Confidence 788888542 1 0 000 12358999999999887542 25899999999999999999888
Q ss_pred CCCccCHHHHHHHHHh--CCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcH-----HHHHHHHHHHHHHHHHHH
Q 020073 248 RGAVIDENEMVRCLVR--GEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTS-----ECFVDLCELAVGNLEALF 319 (331)
Q Consensus 248 rg~~vd~~al~~aL~~--~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~-----~~~~~~~~~~~~nl~~~~ 319 (331)
.... |-.-.+|.+. |.|.+.|- ...| =+..|+++-|-++-..- .-.+.|...+++-|-.+.
T Consensus 293 NP~~--E~~p~~a~~~~~~~i~atGr---s~~p------~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~ 360 (763)
T PRK12862 293 NPTP--EILPEEARAVRPDAIIATGR---SDYP------NQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAIAELA 360 (763)
T ss_pred CCcc--cCCHHHHHHhcCCEEEEECC---cCCC------CcccceeeccchhhhHHhcCCeeCCHHHHHHHHHHHHhcc
Confidence 8763 2222233333 34554441 1112 12358888887764222 123445555555555544
No 300
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=95.86 E-value=0.18 Score=50.12 Aligned_cols=89 Identities=16% Similarity=0.177 Sum_probs=62.7
Q ss_pred cCCCceEEEEec---ChHHHHHHHHHhhC-CCEEEEECCCCCC-----C------C--ccccCCHHhhhcCCCEEEEecc
Q 020073 158 KLGGKRVGIVGL---GNIGLQVAKRLQAF-GCNVLYNSRSKKP-----V------P--YAFYSNVCELAANSDALIICCA 220 (331)
Q Consensus 158 ~l~g~~vgIiG~---G~IG~~~A~~l~~~-G~~V~~~~~~~~~-----~------~--~~~~~~l~ell~~aDiV~l~~P 220 (331)
.+.|++|++||- +++..+++..+..+ |++|.+..+..-. . + +....+++++++++|+|....-
T Consensus 238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~ 317 (429)
T PRK11891 238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRI 317 (429)
T ss_pred CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 478999999997 59999999998876 9999888764321 0 1 2235789999999999998442
Q ss_pred CChh----------hhhhccHHHHhc-CCCCcEEEEc
Q 020073 221 LTDQ----------TRRMINREVMLA-LGKEGIIVNV 246 (331)
Q Consensus 221 ~t~~----------t~~li~~~~l~~-mk~ga~lIn~ 246 (331)
-.+. ....++++.++. .|+++++.-+
T Consensus 318 q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHc 354 (429)
T PRK11891 318 QKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHP 354 (429)
T ss_pred hhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECC
Confidence 1000 113457777777 7777776644
No 301
>PRK08223 hypothetical protein; Validated
Probab=95.85 E-value=0.038 Score=51.97 Aligned_cols=79 Identities=18% Similarity=0.148 Sum_probs=54.2
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------CC-------------------cc--
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------VP-------------------YA-- 200 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~~-------------------~~-- 200 (331)
..|++++|.|||+|.+|..+|+.|...|. ++..+|...-. .+ ..
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~ 102 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAF 102 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence 35899999999999999999999999898 67766643110 00 00
Q ss_pred ----ccCCHHhhhcCCCEEEEeccCC-hhhhhhccHHHHh
Q 020073 201 ----FYSNVCELAANSDALIICCALT-DQTRRMINREVML 235 (331)
Q Consensus 201 ----~~~~l~ell~~aDiV~l~~P~t-~~t~~li~~~~l~ 235 (331)
...+.+++++++|+|+-++..- -+++.+++..-..
T Consensus 103 ~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~ 142 (287)
T PRK08223 103 PEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQ 142 (287)
T ss_pred ecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 0134667888888888776431 2577777665443
No 302
>PLN02342 ornithine carbamoyltransferase
Probab=95.85 E-value=0.22 Score=48.17 Aligned_cols=89 Identities=13% Similarity=0.129 Sum_probs=61.9
Q ss_pred cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCC--------------CccccCCHHhhhcCCCEEEEec---
Q 020073 158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPV--------------PYAFYSNVCELAANSDALIICC--- 219 (331)
Q Consensus 158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~--------------~~~~~~~l~ell~~aDiV~l~~--- 219 (331)
.+.|++|++||= .++.++++..+..+|++|.+..+..-.. .+....+++++++++|+|..-.
T Consensus 191 ~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s 270 (348)
T PLN02342 191 RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWAS 270 (348)
T ss_pred CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccc
Confidence 378999999995 5688888888999999998887643210 1223578999999999999753
Q ss_pred -cCChh--------hhhhccHHHHhcCCCCcEEEEc
Q 020073 220 -ALTDQ--------TRRMINREVMLALGKEGIIVNV 246 (331)
Q Consensus 220 -P~t~~--------t~~li~~~~l~~mk~ga~lIn~ 246 (331)
-..+. ....++++.++.+|+++++.-+
T Consensus 271 ~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHp 306 (348)
T PLN02342 271 MGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHC 306 (348)
T ss_pred cccchhhHHHHHhccCCccCHHHHhccCCCcEEeCC
Confidence 11111 1134577777777777766655
No 303
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=95.84 E-value=0.035 Score=53.62 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=42.4
Q ss_pred ceEEEEecChHHHHHHHHHhh-CCCEEEEE-CCCCCC-------CC------------------ccccCCHHhhhcCCCE
Q 020073 162 KRVGIVGLGNIGLQVAKRLQA-FGCNVLYN-SRSKKP-------VP------------------YAFYSNVCELAANSDA 214 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~-~G~~V~~~-~~~~~~-------~~------------------~~~~~~l~ell~~aDi 214 (331)
.+|||+|+|+||+.+++.+.. -++++.+. ++.++. .+ .....++++++.++|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 379999999999999998874 46787654 433210 00 1112457788889999
Q ss_pred EEEeccCC
Q 020073 215 LIICCALT 222 (331)
Q Consensus 215 V~l~~P~t 222 (331)
|+.|.|..
T Consensus 82 VIdaT~~~ 89 (341)
T PRK04207 82 VVDATPGG 89 (341)
T ss_pred EEECCCch
Confidence 99998754
No 304
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.83 E-value=0.086 Score=52.37 Aligned_cols=108 Identities=20% Similarity=0.184 Sum_probs=71.2
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC----------CCcccc--CCHHhhhcC-CCEEEEec--cCC
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP----------VPYAFY--SNVCELAAN-SDALIICC--ALT 222 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----------~~~~~~--~~l~ell~~-aDiV~l~~--P~t 222 (331)
++.|+++.|+|.|.+|.++|+.|+..|++|.++|+.... .+.... ....+++.. .|+|+..- |.+
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~ 81 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT 81 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC
Confidence 367899999999999999999999999999999875422 111111 122334444 89888764 222
Q ss_pred -hh-------hhhhccHHHH-hcC-CCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 020073 223 -DQ-------TRRMINREVM-LAL-GKEGIIVNVGRGAVIDENEMVRCLVRGE 265 (331)
Q Consensus 223 -~~-------t~~li~~~~l-~~m-k~ga~lIn~srg~~vd~~al~~aL~~~~ 265 (331)
+. ...++....+ ..+ +...+-|--+.|+.....-+...|+...
T Consensus 82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g 134 (447)
T PRK02472 82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGG 134 (447)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCC
Confidence 11 0123333333 233 4446788889999998888888887643
No 305
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=95.81 E-value=0.15 Score=48.99 Aligned_cols=88 Identities=15% Similarity=0.144 Sum_probs=59.7
Q ss_pred CCCceEEEEecC--hHHHHHHHHHhhCCCEEEEECCCCCC-C--------------C--ccccCCHHhhhcCCCEEEEec
Q 020073 159 LGGKRVGIVGLG--NIGLQVAKRLQAFGCNVLYNSRSKKP-V--------------P--YAFYSNVCELAANSDALIICC 219 (331)
Q Consensus 159 l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~-~--------------~--~~~~~~l~ell~~aDiV~l~~ 219 (331)
+.|++|++||-+ ++.++++..+..+|++|.+..+..-. . + .....+++++++++|+|..-+
T Consensus 153 l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~ 232 (331)
T PRK02102 153 LKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTDV 232 (331)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 789999999986 78999999999999999888764321 0 1 122468999999999998843
Q ss_pred cC--C-----hh-----hhhhccHHHHh-cCCCCcEEEEc
Q 020073 220 AL--T-----DQ-----TRRMINREVML-ALGKEGIIVNV 246 (331)
Q Consensus 220 P~--t-----~~-----t~~li~~~~l~-~mk~ga~lIn~ 246 (331)
=. . ++ ...-++++.++ .+|+++++.-+
T Consensus 233 w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~ 272 (331)
T PRK02102 233 WVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHC 272 (331)
T ss_pred cccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECC
Confidence 10 0 00 12234566666 35666666544
No 306
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.79 E-value=0.013 Score=46.82 Aligned_cols=79 Identities=20% Similarity=0.214 Sum_probs=50.9
Q ss_pred EEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc-------ccCCHHh-hhcCCCEEEEeccCChhhhhhc
Q 020073 164 VGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA-------FYSNVCE-LAANSDALIICCALTDQTRRMI 229 (331)
Q Consensus 164 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~-------~~~~l~e-ll~~aDiV~l~~P~t~~t~~li 229 (331)
+.|+|+|.+|+.+++.|+..+.+|++.++.+.. .+.. ....|.+ -+.++|.|+++.+....+..+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~- 79 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLI- 79 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHH-
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHH-
Confidence 579999999999999999977799999887643 1211 1122444 368899999998865443332
Q ss_pred cHHHHhcCCCCcEEE
Q 020073 230 NREVMLALGKEGIIV 244 (331)
Q Consensus 230 ~~~~l~~mk~ga~lI 244 (331)
...+..+-+...+|
T Consensus 80 -~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 80 -ALLARELNPDIRII 93 (116)
T ss_dssp -HHHHHHHTTTSEEE
T ss_pred -HHHHHHHCCCCeEE
Confidence 33444444444444
No 307
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.78 E-value=0.022 Score=54.13 Aligned_cols=58 Identities=21% Similarity=0.279 Sum_probs=44.5
Q ss_pred eEEEEecChHHHHHHHHHhhCC--CEEEEECCCCCC-C-------Ccc--------ccCCHHhhhcCCCEEEEeccC
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFG--CNVLYNSRSKKP-V-------PYA--------FYSNVCELAANSDALIICCAL 221 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~~~~~-~-------~~~--------~~~~l~ell~~aDiV~l~~P~ 221 (331)
+|+|||.|.+|..+|..+...| .+|..+|++... . ... ...+. +.+++||+|+++.+.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~ 77 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGA 77 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCC
Confidence 6999999999999999998888 489999987643 1 000 01233 568999999999975
No 308
>PRK11579 putative oxidoreductase; Provisional
Probab=95.77 E-value=0.02 Score=55.04 Aligned_cols=62 Identities=21% Similarity=0.213 Sum_probs=44.9
Q ss_pred ceEEEEecChHHHH-HHHHHhh-CCCEEE-EECCCCCC-----CCccccCCHHhhhc--CCCEEEEeccCCh
Q 020073 162 KRVGIVGLGNIGLQ-VAKRLQA-FGCNVL-YNSRSKKP-----VPYAFYSNVCELAA--NSDALIICCALTD 223 (331)
Q Consensus 162 ~~vgIiG~G~IG~~-~A~~l~~-~G~~V~-~~~~~~~~-----~~~~~~~~l~ell~--~aDiV~l~~P~t~ 223 (331)
.++||||+|.||+. .+..++. -++++. +++++.+. .....+.+++++++ +.|+|++|+|...
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~ 76 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDT 76 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence 47999999999984 5666654 378876 56766433 12234679999996 4799999998653
No 309
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=95.73 E-value=0.027 Score=54.39 Aligned_cols=88 Identities=17% Similarity=0.264 Sum_probs=56.4
Q ss_pred ceEEEEec-ChHHHHHHHHHhhC-CCEEEE-ECCCCCC--C----C-cc-----ccCCHHh-hhcCCCEEEEeccCChhh
Q 020073 162 KRVGIVGL-GNIGLQVAKRLQAF-GCNVLY-NSRSKKP--V----P-YA-----FYSNVCE-LAANSDALIICCALTDQT 225 (331)
Q Consensus 162 ~~vgIiG~-G~IG~~~A~~l~~~-G~~V~~-~~~~~~~--~----~-~~-----~~~~l~e-ll~~aDiV~l~~P~t~~t 225 (331)
.+|+|||. |.+|+.+++.+... ++++.. .++.... . + .. .+.++++ ...++|+|++|+|....
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~- 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS- 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH-
Confidence 68999996 99999999999876 677654 4532221 0 0 11 1223333 45789999999996522
Q ss_pred hhhccHHHHhcCCCCcEEEEcCCCCccCH
Q 020073 226 RRMINREVMLALGKEGIIVNVGRGAVIDE 254 (331)
Q Consensus 226 ~~li~~~~l~~mk~ga~lIn~srg~~vd~ 254 (331)
..++ .. ..+.|..+||.|-.--.+.
T Consensus 82 ~~~v-~~---a~~aG~~VID~S~~fR~~~ 106 (343)
T PRK00436 82 MDLA-PQ---LLEAGVKVIDLSADFRLKD 106 (343)
T ss_pred HHHH-HH---HHhCCCEEEECCcccCCCC
Confidence 2222 11 1357899999986655544
No 310
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.73 E-value=0.062 Score=53.74 Aligned_cols=107 Identities=21% Similarity=0.211 Sum_probs=69.9
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEec--cCC-h----h
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICC--ALT-D----Q 224 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~--P~t-~----~ 224 (331)
++.|++|.|+|+|..|.++|+.|+..|.+|.++|..... .+......-.+-+.++|+|+..= |.+ + .
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~ 85 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV 85 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence 477899999999999999999999999999999976432 12211110112356789877532 211 1 1
Q ss_pred ---hhh----hccH-HHHhc-C-----CCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073 225 ---TRR----MINR-EVMLA-L-----GKEGIIVNVGRGAVIDENEMVRCLVRG 264 (331)
Q Consensus 225 ---t~~----li~~-~~l~~-m-----k~ga~lIn~srg~~vd~~al~~aL~~~ 264 (331)
++. ++++ +.+.+ + +...+-|.-+.|+.-...-+...|+..
T Consensus 86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~ 139 (460)
T PRK01390 86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREA 139 (460)
T ss_pred HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 111 1332 22222 2 345678888999999999888888864
No 311
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.66 E-value=0.061 Score=54.21 Aligned_cols=97 Identities=11% Similarity=0.232 Sum_probs=69.2
Q ss_pred cCCCceEEEEec----------ChHHHHHHHHHhhCCCEEEEECCCCCC--C--Cc------------------------
Q 020073 158 KLGGKRVGIVGL----------GNIGLQVAKRLQAFGCNVLYNSRSKKP--V--PY------------------------ 199 (331)
Q Consensus 158 ~l~g~~vgIiG~----------G~IG~~~A~~l~~~G~~V~~~~~~~~~--~--~~------------------------ 199 (331)
.+.|++|+|+|+ .+-...+++.|...|.+|.+||+.... . ..
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 588999999998 668899999999999999999987432 1 00
Q ss_pred cccCCHHhhhcCCCEEEEeccCChhhhhhccHHH-HhcCCCCcEEEEcCCCCccCHHHHH
Q 020073 200 AFYSNVCELAANSDALIICCALTDQTRRMINREV-MLALGKEGIIVNVGRGAVIDENEMV 258 (331)
Q Consensus 200 ~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~-l~~mk~ga~lIn~srg~~vd~~al~ 258 (331)
....++.+++++||+|+++.+.. +.+. ++-+. .+.|++..+++|. |+- +|.+.+.
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~-ef~~-l~~~~~~~~m~~~~~viD~-rn~-l~~~~~~ 456 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWD-EFKT-LDYQKIYDNMQKPAFVFDG-RNV-LDHEKLR 456 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCCh-Hhcc-cCHHHHHHhccCCCEEEEC-CCC-CCHHHHH
Confidence 11235678999999999998754 3333 34333 4557766688985 544 4665553
No 312
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.66 E-value=0.011 Score=51.80 Aligned_cols=101 Identities=15% Similarity=0.226 Sum_probs=59.4
Q ss_pred ceEEEEecChHHHHHHHH--HhhCCCEEE-EECCCCCC----CC---ccccCCHHhhhc--CCCEEEEeccCChh---hh
Q 020073 162 KRVGIVGLGNIGLQVAKR--LQAFGCNVL-YNSRSKKP----VP---YAFYSNVCELAA--NSDALIICCALTDQ---TR 226 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~--l~~~G~~V~-~~~~~~~~----~~---~~~~~~l~ell~--~aDiV~l~~P~t~~---t~ 226 (331)
-++.|||.|++|++++.. .+..||+|. ++|-.++. .+ ....++|++.++ +.|+.++|+|...+ +.
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~vad 164 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEHAQEVAD 164 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHHHHHHHHH
Confidence 369999999999999985 347899875 67776654 11 222346677676 68899999996432 11
Q ss_pred hhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 020073 227 RMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLV 262 (331)
Q Consensus 227 ~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~ 262 (331)
.++.+..=.-+-=..+-+++.-+-+|..-+|-..|+
T Consensus 165 ~Lv~aGVkGIlNFtPv~l~~pe~V~V~~iDLt~eLq 200 (211)
T COG2344 165 RLVKAGVKGILNFTPVRLQVPEGVIVENIDLTAELQ 200 (211)
T ss_pred HHHHcCCceEEeccceEecCCCCcEEEEeehHHHHH
Confidence 122111100011113445555555555555555554
No 313
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.58 E-value=0.048 Score=51.54 Aligned_cols=81 Identities=16% Similarity=0.299 Sum_probs=54.8
Q ss_pred eEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC------------CC---------------------c--c------
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP------------VP---------------------Y--A------ 200 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~------------~~---------------------~--~------ 200 (331)
+|.|||+|.+|..+|+.|...|. +++.+|...-. .. . .
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 58999999999999999999998 67666532100 00 0 0
Q ss_pred -----------------ccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcC
Q 020073 201 -----------------FYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVG 247 (331)
Q Consensus 201 -----------------~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~s 247 (331)
....++++++++|+|+.++ .+-+++.+++.--... +..+|+.+
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~t-Dn~esR~L~~~~~~~~---~k~~I~aa 140 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLT-DSRESRWLPTLLSAAK---NKLVINAA 140 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECC-CCHHHHHHHHHHHHHh---CCcEEEEE
Confidence 0012568899999999998 5778888876654433 23556653
No 314
>PRK08328 hypothetical protein; Provisional
Probab=95.58 E-value=0.047 Score=49.72 Aligned_cols=37 Identities=35% Similarity=0.528 Sum_probs=32.4
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS 193 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~ 193 (331)
..|++++|.|+|+|.+|..+|+.|...|. +++.+|..
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 35889999999999999999999999998 67777743
No 315
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.57 E-value=0.025 Score=57.20 Aligned_cols=105 Identities=17% Similarity=0.153 Sum_probs=69.9
Q ss_pred CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcccc--CCHHhhhcCCCEEEEeccCChhhhh---
Q 020073 159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFY--SNVCELAANSDALIICCALTDQTRR--- 227 (331)
Q Consensus 159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~--~~l~ell~~aDiV~l~~P~t~~t~~--- 227 (331)
+.|+++.|+|+|.+|.+.++.|+..|++|.++|..... .+.... ....+.+.++|+|+.+- .-+....
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~Sp-Gi~~~~p~~~ 88 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSP-GFRPTAPVLA 88 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECC-CCCCCCHHHH
Confidence 46899999999999999999999999999999965332 122111 12345567899888764 3222211
Q ss_pred --------hccHHHHh-cC--------CCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073 228 --------MINREVML-AL--------GKEGIIVNVGRGAVIDENEMVRCLVRG 264 (331)
Q Consensus 228 --------li~~~~l~-~m--------k~ga~lIn~srg~~vd~~al~~aL~~~ 264 (331)
++++-.+. +. +...+-|--+-|+.-...-+...|++.
T Consensus 89 ~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~ 142 (488)
T PRK03369 89 AAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAA 142 (488)
T ss_pred HHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence 22222221 11 113577888889998888888888764
No 316
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=95.57 E-value=0.11 Score=49.22 Aligned_cols=88 Identities=22% Similarity=0.208 Sum_probs=62.1
Q ss_pred cCCCceEEEEecC---hHHHHHHHHHhhCCCEEEEECCCCCC-----------CCc--cccCCHHhhhcCCCEEEEeccC
Q 020073 158 KLGGKRVGIVGLG---NIGLQVAKRLQAFGCNVLYNSRSKKP-----------VPY--AFYSNVCELAANSDALIICCAL 221 (331)
Q Consensus 158 ~l~g~~vgIiG~G---~IG~~~A~~l~~~G~~V~~~~~~~~~-----------~~~--~~~~~l~ell~~aDiV~l~~P~ 221 (331)
++.|.+|+++|-| ++.++++..+..+|++|.+..+..-. .+. ....+++++++.+|+|..-- .
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~-~ 225 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTR-I 225 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECC-c
Confidence 3789999999984 99999999999999999988765421 011 23578999999999988732 1
Q ss_pred Ch-------h-----hhhhccHHHHhcCCCCcEEEEc
Q 020073 222 TD-------Q-----TRRMINREVMLALGKEGIIVNV 246 (331)
Q Consensus 222 t~-------~-----t~~li~~~~l~~mk~ga~lIn~ 246 (331)
.. + ...-++++.++..++++++.-+
T Consensus 226 ~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHc 262 (301)
T TIGR00670 226 QKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHP 262 (301)
T ss_pred cccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECC
Confidence 10 0 0223466677777777766644
No 317
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.56 E-value=0.021 Score=53.71 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=46.2
Q ss_pred CCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC---C------Cc----cccC---CHHhhhcCCCEEEEeccC
Q 020073 159 LGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP---V------PY----AFYS---NVCELAANSDALIICCAL 221 (331)
Q Consensus 159 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~---~------~~----~~~~---~l~ell~~aDiV~l~~P~ 221 (331)
+.++++.|+|.|..|++++-.|...|+ +|.+++|+..+ . .. .... ++.+.+..+|+|+.++|.
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~ 204 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPM 204 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCC
Confidence 568899999999999999999999998 78999998654 0 00 0011 123355677888888775
Q ss_pred C
Q 020073 222 T 222 (331)
Q Consensus 222 t 222 (331)
.
T Consensus 205 G 205 (283)
T PRK14027 205 G 205 (283)
T ss_pred C
Confidence 4
No 318
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=95.54 E-value=0.16 Score=49.03 Aligned_cols=61 Identities=10% Similarity=0.064 Sum_probs=48.1
Q ss_pred cCCCceEEEEecC--hHHHHHHHHHhhCCCEEEEECCCCCC-C--------------C--ccccCCHHhhhcCCCEEEEe
Q 020073 158 KLGGKRVGIVGLG--NIGLQVAKRLQAFGCNVLYNSRSKKP-V--------------P--YAFYSNVCELAANSDALIIC 218 (331)
Q Consensus 158 ~l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~-~--------------~--~~~~~~l~ell~~aDiV~l~ 218 (331)
.+.|.+|++||-+ ++.++++..+..+|+++.+..+..-. . + .....+++++++++|+|..-
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 4789999999975 68999999999999999888764321 0 1 12357899999999999874
No 319
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.52 E-value=0.14 Score=48.15 Aligned_cols=108 Identities=12% Similarity=0.172 Sum_probs=74.6
Q ss_pred CceEEEEecChHHHHHHHHHhhCCCEEEEECCC--CCC-CCccccCCHHhhhcCCCEEEEeccCChhh----------hh
Q 020073 161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRS--KKP-VPYAFYSNVCELAANSDALIICCALTDQT----------RR 227 (331)
Q Consensus 161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~--~~~-~~~~~~~~l~ell~~aDiV~l~~P~t~~t----------~~ 227 (331)
|++++|||--.=-..+++.|...|++|..+.-. ... .+.....+.++.++++|+|++-+|.+... +-
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~ 80 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKV 80 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCCceEecccccCCc
Confidence 678999999988899999999999998766432 111 33334445566799999999999966542 11
Q ss_pred hccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCC
Q 020073 228 MINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFE 275 (331)
Q Consensus 228 li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~ 275 (331)
-++++.+++|+++.+ +-++ ++..++-++.++..|. ..|.++
T Consensus 81 ~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~--v~~~~~ 121 (287)
T TIGR02853 81 VLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK--LIELFE 121 (287)
T ss_pred cccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe--EEEEEe
Confidence 247889999998665 4444 4445555567777765 444433
No 320
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=95.52 E-value=0.026 Score=53.13 Aligned_cols=91 Identities=19% Similarity=0.249 Sum_probs=68.4
Q ss_pred CccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------C--------------Ccccc----------CCH
Q 020073 156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------V--------------PYAFY----------SNV 205 (331)
Q Consensus 156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~--------------~~~~~----------~~l 205 (331)
+-...+.++.++|+|-+|-..+......|+-|..++-.+.. . ++... .-+
T Consensus 159 agtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~ 238 (356)
T COG3288 159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELV 238 (356)
T ss_pred cccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHH
Confidence 34577888999999999999999999999988877644321 0 11100 124
Q ss_pred HhhhcCCCEEEEec--cCChhhhhhccHHHHhcCCCCcEEEEcC
Q 020073 206 CELAANSDALIICC--ALTDQTRRMINREVMLALGKEGIIVNVG 247 (331)
Q Consensus 206 ~ell~~aDiV~l~~--P~t~~t~~li~~~~l~~mk~ga~lIn~s 247 (331)
.+..++.||||... |..+.- .|+.++..+.||||+++|+.+
T Consensus 239 a~~~~~~DivITTAlIPGrpAP-~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 239 AEQAKEVDIVITTALIPGRPAP-KLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HHHhcCCCEEEEecccCCCCCc-hhhHHHHHHhcCCCcEEEEeh
Confidence 56788999999875 665553 488999999999999999985
No 321
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=95.49 E-value=0.21 Score=48.07 Aligned_cols=88 Identities=15% Similarity=0.178 Sum_probs=60.7
Q ss_pred CCCceEEEEecC--hHHHHHHHHHhhCCCEEEEECCCCCC---------------CC--ccccCCHHhhhcCCCEEEEec
Q 020073 159 LGGKRVGIVGLG--NIGLQVAKRLQAFGCNVLYNSRSKKP---------------VP--YAFYSNVCELAANSDALIICC 219 (331)
Q Consensus 159 l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~---------------~~--~~~~~~l~ell~~aDiV~l~~ 219 (331)
+.|++|++||-+ ++.++.+..+..+|++|.+..+..-. .+ .....+++++++++|+|..-.
T Consensus 153 l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~ 232 (332)
T PRK04284 153 YKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTDV 232 (332)
T ss_pred cCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECC
Confidence 778999999974 88999999999999999988765211 01 223578999999999998742
Q ss_pred cC--Ch------h-----hhhhccHHHHhcCC-CCcEEEEc
Q 020073 220 AL--TD------Q-----TRRMINREVMLALG-KEGIIVNV 246 (331)
Q Consensus 220 P~--t~------~-----t~~li~~~~l~~mk-~ga~lIn~ 246 (331)
=. .. + -...++++.++.++ +++++.-+
T Consensus 233 w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHp 273 (332)
T PRK04284 233 WVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHC 273 (332)
T ss_pred cccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECC
Confidence 00 00 0 12234667777765 46666654
No 322
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=95.47 E-value=0.051 Score=42.39 Aligned_cols=62 Identities=23% Similarity=0.196 Sum_probs=42.7
Q ss_pred CceEEEEecChHHHHHHHHH-hhCCCEE-EEECCCCCC-----CCccccCCHHhhhcC--CCEEEEeccCC
Q 020073 161 GKRVGIVGLGNIGLQVAKRL-QAFGCNV-LYNSRSKKP-----VPYAFYSNVCELAAN--SDALIICCALT 222 (331)
Q Consensus 161 g~~vgIiG~G~IG~~~A~~l-~~~G~~V-~~~~~~~~~-----~~~~~~~~l~ell~~--aDiV~l~~P~t 222 (331)
..++.|+|+|+.|++++... ...|+.+ .++|.++.. .+...+.+++++.+. .|+-++++|..
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~~ 73 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPAE 73 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-HH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCHH
Confidence 35799999999999988544 3556654 456655554 233334577777666 99999999854
No 323
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.46 E-value=0.028 Score=50.95 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=48.1
Q ss_pred CCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CC-ccc-cCCH-HhhhcCCCEEEEecc
Q 020073 153 YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VP-YAF-YSNV-CELAANSDALIICCA 220 (331)
Q Consensus 153 ~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~-~~~-~~~l-~ell~~aDiV~l~~P 220 (331)
+|..-+++|++|.|||.|.+|..=++.|..+|++|+++++...+ .+ ... ..+. .+-+..+++|+.|+.
T Consensus 17 ~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATd 94 (223)
T PRK05562 17 MFISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATD 94 (223)
T ss_pred eeeEEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCC
Confidence 34455788999999999999999999999999999999886543 01 100 0111 234567887877764
No 324
>PLN02527 aspartate carbamoyltransferase
Probab=95.44 E-value=0.1 Score=49.67 Aligned_cols=88 Identities=19% Similarity=0.266 Sum_probs=60.0
Q ss_pred CCCceEEEEecC---hHHHHHHHHHhhC-CCEEEEECCCCCC-----C------Cc--cccCCHHhhhcCCCEEEEeccC
Q 020073 159 LGGKRVGIVGLG---NIGLQVAKRLQAF-GCNVLYNSRSKKP-----V------PY--AFYSNVCELAANSDALIICCAL 221 (331)
Q Consensus 159 l~g~~vgIiG~G---~IG~~~A~~l~~~-G~~V~~~~~~~~~-----~------~~--~~~~~l~ell~~aDiV~l~~P~ 221 (331)
+.|.+|++||-+ ++.++++..+..+ |++|.+..+..-. . +. ....+++++++++|+|....-.
T Consensus 149 l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~q 228 (306)
T PLN02527 149 LDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRIQ 228 (306)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCcc
Confidence 779999999965 6899999998887 9999887764321 0 11 2357899999999999984311
Q ss_pred Ch------h-h-----hhhccHHHHhcCCCCcEEEEc
Q 020073 222 TD------Q-T-----RRMINREVMLALGKEGIIVNV 246 (331)
Q Consensus 222 t~------~-t-----~~li~~~~l~~mk~ga~lIn~ 246 (331)
.+ . . ...++++.++..++++++.-+
T Consensus 229 ~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHc 265 (306)
T PLN02527 229 RERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHP 265 (306)
T ss_pred hhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECC
Confidence 00 0 1 134466666666666666644
No 325
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.41 E-value=0.039 Score=53.91 Aligned_cols=37 Identities=27% Similarity=0.323 Sum_probs=33.0
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS 193 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~ 193 (331)
..+.+++|.|+|+|.+|..+++.|...|. ++..+|+.
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35889999999999999999999999998 68888765
No 326
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.38 E-value=0.042 Score=52.41 Aligned_cols=85 Identities=19% Similarity=0.379 Sum_probs=55.7
Q ss_pred ceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC-----------CCc-----cc-cCCHHhhhcCCCEEEEeccC-
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP-----------VPY-----AF-YSNVCELAANSDALIICCAL- 221 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~-----------~~~-----~~-~~~l~ell~~aDiV~l~~P~- 221 (331)
.+|+|||.|.+|..+|-.+...|. +++.+|.+.+. ..+ .. ..+.+ .+++||+|+++.-.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEECCCCC
Confidence 489999999999999999876565 78999987643 100 11 13444 58999999997632
Q ss_pred -Ch-hhh-hhc--cH-------HHHhcCCCCcEEEEcC
Q 020073 222 -TD-QTR-RMI--NR-------EVMLALGKEGIIVNVG 247 (331)
Q Consensus 222 -t~-~t~-~li--~~-------~~l~~mk~ga~lIn~s 247 (331)
.+ .|+ .++ |. +.+....|.+++|+++
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 120 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS 120 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc
Confidence 21 233 111 11 2333346789999998
No 327
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.38 E-value=0.034 Score=60.81 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=44.7
Q ss_pred CCceEEEEecChHHHHHHHHHhhC-CCE-------------EEEECCCCCC-------C-C---ccc-cCC---HHhhhc
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAF-GCN-------------VLYNSRSKKP-------V-P---YAF-YSN---VCELAA 210 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~-G~~-------------V~~~~~~~~~-------~-~---~~~-~~~---l~ell~ 210 (331)
..++|+|||+|.||+.+|+.|... +.+ |.+.|++.+. . . ... +.+ +.++++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 477999999999999999999753 333 7788876543 1 1 111 234 444457
Q ss_pred CCCEEEEeccCC
Q 020073 211 NSDALIICCALT 222 (331)
Q Consensus 211 ~aDiV~l~~P~t 222 (331)
++|+|++|+|..
T Consensus 648 ~~DaVIsalP~~ 659 (1042)
T PLN02819 648 QVDVVISLLPAS 659 (1042)
T ss_pred CCCEEEECCCch
Confidence 899999999964
No 328
>PRK07411 hypothetical protein; Validated
Probab=95.36 E-value=0.046 Score=53.73 Aligned_cols=82 Identities=20% Similarity=0.161 Sum_probs=56.8
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------CC-----------------c--cc-
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------VP-----------------Y--AF- 201 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~~-----------------~--~~- 201 (331)
..|+.++|+|||+|.+|..+|+.|...|. ++..+|...-. .+ . ..
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~ 113 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY 113 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 35899999999999999999999999888 67777643110 00 0 00
Q ss_pred -----cCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCC
Q 020073 202 -----YSNVCELAANSDALIICCALTDQTRRMINREVMLALGK 239 (331)
Q Consensus 202 -----~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ 239 (331)
..+..+++.++|+|+.|+ .+.+++.+++..-...-+|
T Consensus 114 ~~~~~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 114 ETRLSSENALDILAPYDVVVDGT-DNFPTRYLVNDACVLLNKP 155 (390)
T ss_pred ecccCHHhHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHcCCC
Confidence 013456788899888776 3557788887766555444
No 329
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=95.34 E-value=0.043 Score=56.70 Aligned_cols=65 Identities=18% Similarity=0.261 Sum_probs=49.2
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCc---cccCC---HHhhhcCCCEEEEeccC
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPY---AFYSN---VCELAANSDALIICCAL 221 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~---~~~~~---l~ell~~aDiV~l~~P~ 221 (331)
.+..+++|||||-|..|+.+++.++.+|++|++++..+.. ... ..+.+ +.++.+++|+|+.....
T Consensus 18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~ 93 (577)
T PLN02948 18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEH 93 (577)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCC
Confidence 3478899999999999999999999999999999887643 110 01233 56667889998776443
No 330
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.33 E-value=0.029 Score=54.79 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=55.2
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------C----------------C---ccc-
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------V----------------P---YAF- 201 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~----------------~---~~~- 201 (331)
..|.+++|.|||+|.+|..+++.|...|. ++..+|...-. . + ...
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 116 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL 116 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence 45899999999999999999999999998 77777653100 0 0 000
Q ss_pred -----cCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073 202 -----YSNVCELAANSDALIICCALTDQTRRMINREVML 235 (331)
Q Consensus 202 -----~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~ 235 (331)
..++.++++++|+|+.|+- +.+++.++++.-..
T Consensus 117 ~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~ 154 (370)
T PRK05600 117 RERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEI 154 (370)
T ss_pred eeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence 1235568888998877764 56778777765443
No 331
>PRK08265 short chain dehydrogenase; Provisional
Probab=95.32 E-value=0.043 Score=50.20 Aligned_cols=38 Identities=32% Similarity=0.292 Sum_probs=34.1
Q ss_pred cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073 158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKK 195 (331)
Q Consensus 158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~ 195 (331)
+++|+++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD 41 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 478999999995 99999999999999999999988754
No 332
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.32 E-value=0.065 Score=46.63 Aligned_cols=31 Identities=32% Similarity=0.484 Sum_probs=27.2
Q ss_pred eEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS 193 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~ 193 (331)
+|+|||+|.+|..+|+.|...|. ++..+|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999998898 58877754
No 333
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.31 E-value=0.085 Score=50.89 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=62.3
Q ss_pred ceEEEEecChHHHHHHHHHhhC----------CCEEEE-ECCCCC-------C----------CC-cc------ccCCHH
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAF----------GCNVLY-NSRSKK-------P----------VP-YA------FYSNVC 206 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~----------G~~V~~-~~~~~~-------~----------~~-~~------~~~~l~ 206 (331)
-+|+|+|+|.||+.+++.+... +++|.+ +|++.. . .+ .. ...+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 3799999999999999998644 567653 454211 0 00 00 123778
Q ss_pred hhh--cCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHhCCc
Q 020073 207 ELA--ANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAV-IDENEMVRCLVRGEI 266 (331)
Q Consensus 207 ell--~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~-vd~~al~~aL~~~~i 266 (331)
+++ .+.|+|+.|+|....+...--.-....++.|.-+|-..-+.+ ...++|.++.++...
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~ 145 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV 145 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence 887 468999999986543211111112344566766665443333 245677777766654
No 334
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=95.29 E-value=0.2 Score=47.71 Aligned_cols=135 Identities=19% Similarity=0.230 Sum_probs=82.6
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC--C-----------CC--c--cccCCHHhhhcCCCEEEEeccCChh
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK--P-----------VP--Y--AFYSNVCELAANSDALIICCALTDQ 224 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~--~-----------~~--~--~~~~~l~ell~~aDiV~l~~P~t~~ 224 (331)
++|.|+|.|.||..++-+|...|.+|+.+.|.+. . .+ . .....-.+.+..+|+|++++= +-+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vK-a~q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVK-AYQ 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEec-ccc
Confidence 4799999999999999999999988888877763 1 11 0 111233456678999999974 334
Q ss_pred hhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCC--CCCCCCCccccCCceEEcCCCCCCc
Q 020073 225 TRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFE--NEPYVPKELLELDNVVLQPHRAVFT 300 (331)
Q Consensus 225 t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~--~EP~~~~~L~~~~nvilTPH~a~~t 300 (331)
+...+ +......++.++++-.--| +=+++.+-+.+...++- .|+..+. .+....-.......+.+.+..++..
T Consensus 80 ~~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~il-~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 80 LEEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETVL-GGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred HHHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceEE-EEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 44444 4455667788766644222 23444566666555443 2333332 2221111344567888888777665
No 335
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.26 E-value=0.025 Score=58.11 Aligned_cols=68 Identities=13% Similarity=0.122 Sum_probs=50.2
Q ss_pred ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc-------ccCCHHhh-hcCCCEEEEeccCChhhhh
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA-------FYSNVCEL-AANSDALIICCALTDQTRR 227 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~-------~~~~l~el-l~~aDiV~l~~P~t~~t~~ 227 (331)
.++.|+|+|++|+.+|+.|+..|.+|++.|.+++. .+.. ..+.++++ ++++|.++++++.+.++..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 46899999999999999999999999999987654 1111 11123332 5789999999887766655
Q ss_pred hc
Q 020073 228 MI 229 (331)
Q Consensus 228 li 229 (331)
++
T Consensus 498 iv 499 (558)
T PRK10669 498 IV 499 (558)
T ss_pred HH
Confidence 54
No 336
>PRK05086 malate dehydrogenase; Provisional
Probab=95.25 E-value=0.099 Score=49.82 Aligned_cols=88 Identities=15% Similarity=0.214 Sum_probs=55.3
Q ss_pred ceEEEEec-ChHHHHHHHHHh---hCCCEEEEECCCCCC----CC--c-c--c------cCCHHhhhcCCCEEEEeccC-
Q 020073 162 KRVGIVGL-GNIGLQVAKRLQ---AFGCNVLYNSRSKKP----VP--Y-A--F------YSNVCELAANSDALIICCAL- 221 (331)
Q Consensus 162 ~~vgIiG~-G~IG~~~A~~l~---~~G~~V~~~~~~~~~----~~--~-~--~------~~~l~ell~~aDiV~l~~P~- 221 (331)
++++|||. |.||+++|..+. ..+..+..+++++.. .+ . . . ..++.+.++++|+|++|+-.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 47999999 999999998774 344578888875432 01 0 1 0 23566888999999999843
Q ss_pred -Chh-hh-hhc------cHHHHhcC---CCCcEEEEcCCC
Q 020073 222 -TDQ-TR-RMI------NREVMLAL---GKEGIIVNVGRG 249 (331)
Q Consensus 222 -t~~-t~-~li------~~~~l~~m---k~ga~lIn~srg 249 (331)
.+. ++ .++ -++..+.| .+.+++++++-.
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP 120 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 211 11 111 12233333 577899988643
No 337
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.25 E-value=0.05 Score=53.99 Aligned_cols=86 Identities=28% Similarity=0.249 Sum_probs=56.9
Q ss_pred CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------C--Cccc-------cCCHHh-hhcCCCEEEEeccCC
Q 020073 159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------V--PYAF-------YSNVCE-LAANSDALIICCALT 222 (331)
Q Consensus 159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~--~~~~-------~~~l~e-ll~~aDiV~l~~P~t 222 (331)
+..+++.|+|+|.+|+.+++.|...|.+|++++++++. . +... ...|.+ -+.++|.|+++++.+
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 44688999999999999999999999999999877643 0 1110 112322 367899999888765
Q ss_pred hhhhhhccHHHHhcCCCCcEEEEc
Q 020073 223 DQTRRMINREVMLALGKEGIIVNV 246 (331)
Q Consensus 223 ~~t~~li~~~~l~~mk~ga~lIn~ 246 (331)
.. +++-......+.+..+++-+
T Consensus 309 ~~--n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 309 EA--NILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred HH--HHHHHHHHHHhCCCeEEEEE
Confidence 33 33333333445555555543
No 338
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=95.21 E-value=0.099 Score=49.80 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=47.8
Q ss_pred CCCceEEEEec---ChHHHHHHHHHhhCCC-EEEEECCCCCC----C--CccccCCHHhhhcCCCEEEE
Q 020073 159 LGGKRVGIVGL---GNIGLQVAKRLQAFGC-NVLYNSRSKKP----V--PYAFYSNVCELAANSDALII 217 (331)
Q Consensus 159 l~g~~vgIiG~---G~IG~~~A~~l~~~G~-~V~~~~~~~~~----~--~~~~~~~l~ell~~aDiV~l 217 (331)
+.|.+|+++|= +++..+++..+..+|+ +|.+..+..-. . ......+++++++++|+|..
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~ 223 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT 223 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence 67899999997 6999999999999999 89888764321 1 12335789999999999986
No 339
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.17 E-value=0.07 Score=52.88 Aligned_cols=67 Identities=12% Similarity=0.201 Sum_probs=53.8
Q ss_pred CccCCCceEEEEec----------ChHHHHHHHHHhhCC-CEEEEECCCCCCC----C-ccccCCHHhhhcCCCEEEEec
Q 020073 156 GSKLGGKRVGIVGL----------GNIGLQVAKRLQAFG-CNVLYNSRSKKPV----P-YAFYSNVCELAANSDALIICC 219 (331)
Q Consensus 156 ~~~l~g~~vgIiG~----------G~IG~~~A~~l~~~G-~~V~~~~~~~~~~----~-~~~~~~l~ell~~aDiV~l~~ 219 (331)
+.++.|++|+|+|+ .+-...+++.|...| .+|.+||+..... . .....+++++++.||+|+++.
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t 394 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV 394 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence 45688999999998 568889999999996 9999999875431 1 113468999999999999998
Q ss_pred cCC
Q 020073 220 ALT 222 (331)
Q Consensus 220 P~t 222 (331)
+..
T Consensus 395 ~~~ 397 (415)
T PRK11064 395 DHS 397 (415)
T ss_pred CCH
Confidence 754
No 340
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=95.16 E-value=0.25 Score=46.70 Aligned_cols=106 Identities=20% Similarity=0.189 Sum_probs=70.8
Q ss_pred CceEEEEec-ChHHHHHHHHHhhCCCE-EEEECCC--CCC-CCccccCCHHhhhcC--CCEEEEeccCChhhhhhccHHH
Q 020073 161 GKRVGIVGL-GNIGLQVAKRLQAFGCN-VLYNSRS--KKP-VPYAFYSNVCELAAN--SDALIICCALTDQTRRMINREV 233 (331)
Q Consensus 161 g~~vgIiG~-G~IG~~~A~~l~~~G~~-V~~~~~~--~~~-~~~~~~~~l~ell~~--aDiV~l~~P~t~~t~~li~~~~ 233 (331)
+.+|.|.|. |.+|+.+.+.|..+|++ |+.+++. ... .+...+.+++++-.. .|+.++++|.. .+...+ ++.
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~~-~v~~~l-~e~ 85 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPPP-FAADAI-LEA 85 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCHH-HHHHHH-HHH
Confidence 457899995 88999999999998886 3356665 333 456667899999987 89999999944 444444 222
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEE
Q 020073 234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGA 269 (331)
Q Consensus 234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga 269 (331)
.++=-+.++++.-+- .+-+++.|.+..+++.++-.
T Consensus 86 ~~~gvk~avI~s~Gf-~~~~~~~l~~~a~~~girvl 120 (291)
T PRK05678 86 IDAGIDLIVCITEGI-PVLDMLEVKAYLERKKTRLI 120 (291)
T ss_pred HHCCCCEEEEECCCC-CHHHHHHHHHHHHHcCCEEE
Confidence 221123345554433 33344588888888876633
No 341
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.15 E-value=0.054 Score=52.55 Aligned_cols=37 Identities=19% Similarity=0.316 Sum_probs=32.3
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS 193 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~ 193 (331)
..|++++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45899999999999999999999999998 67777653
No 342
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.14 E-value=0.25 Score=45.01 Aligned_cols=119 Identities=22% Similarity=0.232 Sum_probs=71.7
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------CC-----------------c--c---
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------VP-----------------Y--A--- 200 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~~-----------------~--~--- 200 (331)
.|++++|.|+|+|.+|..+|+.|...|. +++.+|...-. .+ . .
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~ 87 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE 87 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence 4788999999999999999999998888 77777643100 00 0 0
Q ss_pred -c--cCCHHhhh-cCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCH-----------------HHHHH
Q 020073 201 -F--YSNVCELA-ANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDE-----------------NEMVR 259 (331)
Q Consensus 201 -~--~~~l~ell-~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~-----------------~al~~ 259 (331)
. ..++++++ .+.|+|+.|+-..+ .+..+++...+. .-.++...+-|.-.|. ..+-.
T Consensus 88 ~~i~~~~~~~l~~~~~D~VvdaiD~~~-~k~~L~~~c~~~--~ip~I~s~g~g~~~dp~~i~i~di~~t~~~pla~~~R~ 164 (231)
T cd00755 88 EFLTPDNSEDLLGGDPDFVVDAIDSIR-AKVALIAYCRKR--KIPVISSMGAGGKLDPTRIRVADISKTSGDPLARKVRK 164 (231)
T ss_pred eecCHhHHHHHhcCCCCEEEEcCCCHH-HHHHHHHHHHHh--CCCEEEEeCCcCCCCCCeEEEccEeccccCcHHHHHHH
Confidence 0 02345555 46999999875433 333333322221 2235555666654442 34666
Q ss_pred HHHhCCceEEEeecCCCCCC
Q 020073 260 CLVRGEIAGAGLDVFENEPY 279 (331)
Q Consensus 260 aL~~~~i~ga~lDV~~~EP~ 279 (331)
.|++..+..-.-=||..|++
T Consensus 165 ~Lrk~~~~~~~~~v~S~E~~ 184 (231)
T cd00755 165 RLRKRGIFFGVPVVYSTEPP 184 (231)
T ss_pred HHHHcCCCCCeEEEeCCCCC
Confidence 77777775223346778863
No 343
>PRK06349 homoserine dehydrogenase; Provisional
Probab=95.13 E-value=0.087 Score=52.40 Aligned_cols=101 Identities=18% Similarity=0.264 Sum_probs=60.6
Q ss_pred ceEEEEecChHHHHHHHHHhh--------C--CCEEE-EECCCCCC------CCccccCCHHhhhc--CCCEEEEeccCC
Q 020073 162 KRVGIVGLGNIGLQVAKRLQA--------F--GCNVL-YNSRSKKP------VPYAFYSNVCELAA--NSDALIICCALT 222 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~--------~--G~~V~-~~~~~~~~------~~~~~~~~l~ell~--~aDiV~l~~P~t 222 (331)
-+|||+|+|.||+.+++.+.. . +.+|. +++++... .....+.++++++. +.|+|+.+++..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 479999999999999988743 2 34554 45665433 11234568899985 469999988653
Q ss_pred hhhhhhccHHHHhcCCCCcEEEEcCCCCcc-CHHHHHHHHHhCCc
Q 020073 223 DQTRRMINREVMLALGKEGIIVNVGRGAVI-DENEMVRCLVRGEI 266 (331)
Q Consensus 223 ~~t~~li~~~~l~~mk~ga~lIn~srg~~v-d~~al~~aL~~~~i 266 (331)
.....++ .+.++.|.-+|...-+.+. .-+.|.++.+++..
T Consensus 84 ~~~~~~~----~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv 124 (426)
T PRK06349 84 EPARELI----LKALEAGKHVVTANKALLAVHGAELFAAAEEKGV 124 (426)
T ss_pred hHHHHHH----HHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCC
Confidence 2222222 2345666655543322222 23567777766654
No 344
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.12 E-value=0.089 Score=49.79 Aligned_cols=83 Identities=22% Similarity=0.348 Sum_probs=55.0
Q ss_pred EEEEecChHHHHHHHHHhhCC--CEEEEECCCCCC-----------CCc----cc--cCCHHhhhcCCCEEEEeccCCh-
Q 020073 164 VGIVGLGNIGLQVAKRLQAFG--CNVLYNSRSKKP-----------VPY----AF--YSNVCELAANSDALIICCALTD- 223 (331)
Q Consensus 164 vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~~~~~-----------~~~----~~--~~~l~ell~~aDiV~l~~P~t~- 223 (331)
|+|||.|.+|..+|-.+...| .++..+|..... ... .. ..+ .+.+++||+|+++.....
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence 589999999999999998877 479999987653 010 00 122 468999999999985321
Q ss_pred -h---------hhhhcc--HHHHhcCCCCcEEEEcC
Q 020073 224 -Q---------TRRMIN--REVMLALGKEGIIVNVG 247 (331)
Q Consensus 224 -~---------t~~li~--~~~l~~mk~ga~lIn~s 247 (331)
. +..++. ...+....|.+++|+++
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 1 111120 12233335788999987
No 345
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.12 E-value=0.089 Score=51.31 Aligned_cols=83 Identities=23% Similarity=0.365 Sum_probs=61.6
Q ss_pred CCCceEEEEecC----------hHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCC
Q 020073 159 LGGKRVGIVGLG----------NIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALT 222 (331)
Q Consensus 159 l~g~~vgIiG~G----------~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t 222 (331)
|.||++||+|+- +-...++++|+..|.+|.+||+.... .+.....++.+++++||+++++....
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew~ 387 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEWD 387 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccHH
Confidence 899999999974 56788999999999999999987544 12455679999999999999986533
Q ss_pred hhhhhhccHHHHhcCCCCcEEEE
Q 020073 223 DQTRRMINREVMLALGKEGIIVN 245 (331)
Q Consensus 223 ~~t~~li~~~~l~~mk~ga~lIn 245 (331)
+.+. ++-+.+ .|| +.++++
T Consensus 388 -ef~~-~d~~~~-~m~-~~~v~D 406 (414)
T COG1004 388 -EFRD-LDFEKL-LMK-TPVVID 406 (414)
T ss_pred -HHhc-cChhhh-hcc-CCEEEe
Confidence 3333 233344 565 455555
No 346
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=95.10 E-value=0.75 Score=45.29 Aligned_cols=178 Identities=19% Similarity=0.203 Sum_probs=114.0
Q ss_pred CCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCC
Q 020073 105 RGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFG 184 (331)
Q Consensus 105 ~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G 184 (331)
..|+|.|..- + -+|-.+++.+|+.+|- .|+.|+..+|.+.|.|.-|-++++.+.+.|
T Consensus 166 ~~IPvFhDDq-q--GTaiv~lA~llnalk~--------------------~gk~l~d~kiv~~GAGAAgiaia~~l~~~g 222 (432)
T COG0281 166 MNIPVFHDDQ-Q--GTAIVTLAALLNALKL--------------------TGKKLKDQKIVINGAGAAGIAIADLLVAAG 222 (432)
T ss_pred CCCCcccccc-c--HHHHHHHHHHHHHHHH--------------------hCCCccceEEEEeCCcHHHHHHHHHHHHhC
Confidence 3577777633 2 3566677777775553 467899999999999999999999999999
Q ss_pred C---EEEEECCCCCC----CC-----ccc---------cCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEE
Q 020073 185 C---NVLYNSRSKKP----VP-----YAF---------YSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGII 243 (331)
Q Consensus 185 ~---~V~~~~~~~~~----~~-----~~~---------~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~l 243 (331)
+ +|+.+|+..-- .. ..+ ... ++.+..+|+++-+ + ..+.+.++.++.|.+.+++
T Consensus 223 ~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~---S--~~G~~t~e~V~~Ma~~PiI 296 (432)
T COG0281 223 VKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGV---S--GVGAFTEEMVKEMAKHPII 296 (432)
T ss_pred CCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEc---C--CCCCcCHHHHHHhccCCEE
Confidence 8 58888876321 00 000 011 4578899987765 2 2289999999999999998
Q ss_pred EEcCCCCc-cCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHH-----HHHHHHHHHHHHHHH
Q 020073 244 VNVGRGAV-IDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSE-----CFVDLCELAVGNLEA 317 (331)
Q Consensus 244 In~srg~~-vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~-----~~~~~~~~~~~nl~~ 317 (331)
.=.|-... +..++..++=....|.+-| -|..|. +.-|+++-|.++-..-. --+.|...+++-|..
T Consensus 297 falaNP~pEi~Pe~a~~~~~~aaivaTG------rsd~Pn---QvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~ 367 (432)
T COG0281 297 FALANPTPEITPEDAKEWGDGAAIVATG------RSDYPN---QVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIAD 367 (432)
T ss_pred eecCCCCccCCHHHHhhcCCCCEEEEeC------CCCCcc---cccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHh
Confidence 87776552 1222222211111333222 221111 66799999998754332 234566666666666
Q ss_pred HHc
Q 020073 318 LFS 320 (331)
Q Consensus 318 ~~~ 320 (331)
+..
T Consensus 368 ~~~ 370 (432)
T COG0281 368 LAR 370 (432)
T ss_pred hcc
Confidence 654
No 347
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.06 E-value=0.15 Score=45.94 Aligned_cols=86 Identities=26% Similarity=0.337 Sum_probs=54.2
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc---cc--CCHHhh-----hcCCCEEEEeccCCh
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA---FY--SNVCEL-----AANSDALIICCALTD 223 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~---~~--~~l~el-----l~~aDiV~l~~P~t~ 223 (331)
.|.++.|+|.|.+|+.+++.++..|.+|++.+++... .+.. .. .+..+. -...|+++.+++...
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~ 213 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPE 213 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHH
Confidence 5789999999999999999999999999988876432 0100 00 111111 234677776654321
Q ss_pred hhhhhccHHHHhcCCCCcEEEEcCCCC
Q 020073 224 QTRRMINREVMLALGKEGIIVNVGRGA 250 (331)
Q Consensus 224 ~t~~li~~~~l~~mk~ga~lIn~srg~ 250 (331)
. -...++.|+++..+++.+...
T Consensus 214 ~-----~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 214 T-----LAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred H-----HHHHHHhcccCCEEEEEccCC
Confidence 1 133455667777777766543
No 348
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.06 E-value=0.019 Score=46.22 Aligned_cols=92 Identities=22% Similarity=0.304 Sum_probs=56.7
Q ss_pred ecChHHHHHHHHHhhC----CCEEE-EECCC--CC-C-----CCccccCCHHhhhc--CCCEEEEeccCChhhhhhccHH
Q 020073 168 GLGNIGLQVAKRLQAF----GCNVL-YNSRS--KK-P-----VPYAFYSNVCELAA--NSDALIICCALTDQTRRMINRE 232 (331)
Q Consensus 168 G~G~IG~~~A~~l~~~----G~~V~-~~~~~--~~-~-----~~~~~~~~l~ell~--~aDiV~l~~P~t~~t~~li~~~ 232 (331)
|+|.||+.+++.+... +++|. +++++ .. . .......++++++. ..|+|+=|.+..+.+. -
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~-----~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAE-----Y 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHH-----H
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHH-----H
Confidence 8999999999999864 67765 45665 11 1 12234578999988 9999999965433332 2
Q ss_pred HHhcCCCCcEEEEcCCCCcc---CHHHHHHHHHhC
Q 020073 233 VMLALGKEGIIVNVGRGAVI---DENEMVRCLVRG 264 (331)
Q Consensus 233 ~l~~mk~ga~lIn~srg~~v---d~~al~~aL~~~ 264 (331)
....++.|.-+|-.+-|.+. ..+.|.++.+++
T Consensus 76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~ 110 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALADEALYEELREAARKN 110 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHc
Confidence 23446788899999888888 233344444443
No 349
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=95.01 E-value=0.13 Score=47.90 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=43.1
Q ss_pred ceEEEEe-cChHHHHHHHHHhh-CCCEEEE-ECCCCCC--------------CCccccCCHHhhhcCCCEEEEeccC
Q 020073 162 KRVGIVG-LGNIGLQVAKRLQA-FGCNVLY-NSRSKKP--------------VPYAFYSNVCELAANSDALIICCAL 221 (331)
Q Consensus 162 ~~vgIiG-~G~IG~~~A~~l~~-~G~~V~~-~~~~~~~--------------~~~~~~~~l~ell~~aDiV~l~~P~ 221 (331)
.+|+|+| +|.||+.+++.+.. -++++.+ +++.... .+...+.+++++...+|+|+.+.|.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p 78 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTP 78 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCCh
Confidence 3799999 69999999999875 5788764 6643211 1123346788886679999999753
No 350
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=95.00 E-value=0.048 Score=52.54 Aligned_cols=55 Identities=25% Similarity=0.355 Sum_probs=42.3
Q ss_pred eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCC-----Cc---cccCC---HHhhhcCCCEEEE
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV-----PY---AFYSN---VCELAANSDALII 217 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~---~~~~~---l~ell~~aDiV~l 217 (331)
||||||.|..|+.+++.++.+|++|++++.++... .. ..+.+ +.++++.+|+|..
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~ 66 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITF 66 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEe
Confidence 59999999999999999999999999999876441 10 01223 6677888898764
No 351
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=94.98 E-value=0.071 Score=52.43 Aligned_cols=79 Identities=25% Similarity=0.241 Sum_probs=53.8
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------CC-----------------c--cc-
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------VP-----------------Y--AF- 201 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~~-----------------~--~~- 201 (331)
..|++++|.|||+|.+|..+|+.|...|. ++..+|...-. .+ . ..
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 117 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH 117 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence 35889999999999999999999998888 67777643210 00 0 00
Q ss_pred -----cCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhc
Q 020073 202 -----YSNVCELAANSDALIICCALTDQTRRMINREVMLA 236 (331)
Q Consensus 202 -----~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~ 236 (331)
..+..++++++|+|+.|+ .+.+++.++++.-...
T Consensus 118 ~~~i~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~ 156 (392)
T PRK07878 118 EFRLDPSNAVELFSQYDLILDGT-DNFATRYLVNDAAVLA 156 (392)
T ss_pred eccCChhHHHHHHhcCCEEEECC-CCHHHHHHHHHHHHHc
Confidence 012456778888887765 4556777776655443
No 352
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=94.98 E-value=0.091 Score=50.80 Aligned_cols=83 Identities=17% Similarity=0.208 Sum_probs=51.9
Q ss_pred CCceEEEEe-cChHHHHHHHHHhhCCC---EEEEE--CCCCCC-C---Cc-cccCCHH-hhhcCCCEEEEeccCChhhhh
Q 020073 160 GGKRVGIVG-LGNIGLQVAKRLQAFGC---NVLYN--SRSKKP-V---PY-AFYSNVC-ELAANSDALIICCALTDQTRR 227 (331)
Q Consensus 160 ~g~~vgIiG-~G~IG~~~A~~l~~~G~---~V~~~--~~~~~~-~---~~-~~~~~l~-ell~~aDiV~l~~P~t~~t~~ 227 (331)
...+|+|+| .|.+|+.+.+.|...++ ++.+. .++..+ . +. ....+++ +.+.++|+|++++|.. .+..
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~~ 84 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS-ISKK 84 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH-HHHH
Confidence 346899999 79999999999987555 44333 233222 1 10 1112222 4568899999999865 3333
Q ss_pred hccHHHHhcCCCCcEEEEcC
Q 020073 228 MINREVMLALGKEGIIVNVG 247 (331)
Q Consensus 228 li~~~~l~~mk~ga~lIn~s 247 (331)
+.. +. .+.|+.+||.|
T Consensus 85 ~~~-~~---~~~g~~VIDlS 100 (344)
T PLN02383 85 FGP-IA---VDKGAVVVDNS 100 (344)
T ss_pred HHH-HH---HhCCCEEEECC
Confidence 332 11 25688999988
No 353
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.96 E-value=0.062 Score=47.99 Aligned_cols=38 Identities=37% Similarity=0.547 Sum_probs=33.6
Q ss_pred cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073 158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKK 195 (331)
Q Consensus 158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~ 195 (331)
+++|+++.|.|. |.||+.+++.+...|++|++.+|+..
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~ 40 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN 40 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 367899999995 88999999999999999999988654
No 354
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.95 E-value=0.065 Score=54.25 Aligned_cols=108 Identities=17% Similarity=0.156 Sum_probs=70.9
Q ss_pred CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--------C--Ccccc--CCHHhhhcCCCEEEEe--ccCC--
Q 020073 159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--------V--PYAFY--SNVCELAANSDALIIC--CALT-- 222 (331)
Q Consensus 159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--------~--~~~~~--~~l~ell~~aDiV~l~--~P~t-- 222 (331)
+.++++.|+|+|..|.++|+.|+..|.+|.++|..... . +.... ....+.+.++|+|+.. +|.+
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~ 84 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEA 84 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCccc
Confidence 56889999999999999999999999999999965422 0 11111 1123456689999886 3432
Q ss_pred ---hhh-------hhhccH-HHHhc-C--------CCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 020073 223 ---DQT-------RRMINR-EVMLA-L--------GKEGIIVNVGRGAVIDENEMVRCLVRGEI 266 (331)
Q Consensus 223 ---~~t-------~~li~~-~~l~~-m--------k~ga~lIn~srg~~vd~~al~~aL~~~~i 266 (331)
+.. ..+++. +.+.. + ++..+-|--+-|+.-...-+...|++...
T Consensus 85 ~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~ 148 (498)
T PRK02006 85 ALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGK 148 (498)
T ss_pred ccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence 211 122322 22211 2 22467788888999888888888876543
No 355
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.90 E-value=0.068 Score=51.41 Aligned_cols=83 Identities=10% Similarity=0.177 Sum_probs=52.2
Q ss_pred CceEEEEe-cChHHHHHHHHHhhCCC---EEEEECCCCCC---C---Cc-cccCCHH-hhhcCCCEEEEeccCChhhhhh
Q 020073 161 GKRVGIVG-LGNIGLQVAKRLQAFGC---NVLYNSRSKKP---V---PY-AFYSNVC-ELAANSDALIICCALTDQTRRM 228 (331)
Q Consensus 161 g~~vgIiG-~G~IG~~~A~~l~~~G~---~V~~~~~~~~~---~---~~-~~~~~l~-ell~~aDiV~l~~P~t~~t~~l 228 (331)
+++|+|+| .|.+|+.+.+.|...|+ ++.+..+.... . +. ....+++ ..+.++|+|++|+|.. .++.+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s~~~ 79 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VSKKY 79 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChH-HHHHH
Confidence 46899999 79999999999998655 44555433222 1 10 1112222 3457899999999854 33333
Q ss_pred ccHHHHhcCCCCcEEEEcCC
Q 020073 229 INREVMLALGKEGIIVNVGR 248 (331)
Q Consensus 229 i~~~~l~~mk~ga~lIn~sr 248 (331)
. ... ++.|+++|+.|.
T Consensus 80 ~-~~~---~~~G~~VIDlS~ 95 (334)
T PRK14874 80 A-PKA---AAAGAVVIDNSS 95 (334)
T ss_pred H-HHH---HhCCCEEEECCc
Confidence 3 222 357889998874
No 356
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.90 E-value=0.12 Score=45.84 Aligned_cols=37 Identities=24% Similarity=0.412 Sum_probs=32.6
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS 193 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~ 193 (331)
+.|.+++|.|+|+|.+|.++++.|...|. ++..+|..
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 45899999999999999999999999998 57777654
No 357
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.88 E-value=0.04 Score=57.18 Aligned_cols=85 Identities=19% Similarity=0.237 Sum_probs=58.2
Q ss_pred CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc-------ccCCHHhh-hcCCCEEEEeccCChhhh
Q 020073 161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA-------FYSNVCEL-AANSDALIICCALTDQTR 226 (331)
Q Consensus 161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~-------~~~~l~el-l~~aDiV~l~~P~t~~t~ 226 (331)
..++.|+|+|++|+.+++.|...|.++++.|.+++. .+.. ..+.|+++ +.+||.++++++....+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 357999999999999999999999999999987654 1111 11123333 678999999998776655
Q ss_pred hhccHHHHhcCCCCcEEEEcC
Q 020073 227 RMINREVMLALGKEGIIVNVG 247 (331)
Q Consensus 227 ~li~~~~l~~mk~ga~lIn~s 247 (331)
.++. ...++.|...+|--+
T Consensus 480 ~i~~--~~r~~~p~~~IiaRa 498 (601)
T PRK03659 480 KIVE--LCQQHFPHLHILARA 498 (601)
T ss_pred HHHH--HHHHHCCCCeEEEEe
Confidence 5442 233444555555433
No 358
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.86 E-value=0.083 Score=52.91 Aligned_cols=107 Identities=19% Similarity=0.275 Sum_probs=72.4
Q ss_pred CCCceEEEEecChHHHH-HHHHHhhCCCEEEEECCCCCC-------CCcccc-CCHHhhhcCCCEEEEec--cC-Chhhh
Q 020073 159 LGGKRVGIVGLGNIGLQ-VAKRLQAFGCNVLYNSRSKKP-------VPYAFY-SNVCELAANSDALIICC--AL-TDQTR 226 (331)
Q Consensus 159 l~g~~vgIiG~G~IG~~-~A~~l~~~G~~V~~~~~~~~~-------~~~~~~-~~l~ell~~aDiV~l~~--P~-t~~t~ 226 (331)
.+++++.|+|+|..|.+ +|+.|+..|.+|.++|....+ .+.... ..-.+.+..+|+|+..- |. .+...
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 56789999999999999 799999999999999976542 122111 11234556899888763 22 22221
Q ss_pred -------hhccHHHH-hcC-C-CCcEEEEcCCCCccCHHHHHHHHHhCC
Q 020073 227 -------RMINREVM-LAL-G-KEGIIVNVGRGAVIDENEMVRCLVRGE 265 (331)
Q Consensus 227 -------~li~~~~l-~~m-k-~ga~lIn~srg~~vd~~al~~aL~~~~ 265 (331)
.+++.-.+ .++ + ...+-|.-+.|+.-...-+...|+...
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 23444333 333 2 346888889999999988888887654
No 359
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=94.81 E-value=0.18 Score=50.20 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=63.7
Q ss_pred CccCCCceEEEEec----------ChHHHHHHHHHhhCCCEEEEECCCCCCCCc-cc--cCCHHh-hhcCCCEEEEeccC
Q 020073 156 GSKLGGKRVGIVGL----------GNIGLQVAKRLQAFGCNVLYNSRSKKPVPY-AF--YSNVCE-LAANSDALIICCAL 221 (331)
Q Consensus 156 ~~~l~g~~vgIiG~----------G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~-~~--~~~l~e-ll~~aDiV~l~~P~ 221 (331)
+..+.|++|+|+|+ .+-+..+++.|...|.+|.+||+....... .. ...+++ .++.||.|++++..
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~h 388 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVSEVKSSHYDAIIVAVGH 388 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccchhhhhcCCCEEEEccCC
Confidence 45689999999998 578899999999999999999997432110 01 111223 46789999999865
Q ss_pred ChhhhhhccHHHHh-cCCCCcEEEEcCCCCcc
Q 020073 222 TDQTRRMINREVML-ALGKEGIIVNVGRGAVI 252 (331)
Q Consensus 222 t~~t~~li~~~~l~-~mk~ga~lIn~srg~~v 252 (331)
. +.+. ++.+.+. .||...++|+ +|+-+-
T Consensus 389 ~-~f~~-~~~~~~~~~~~~~~~iiD-~r~~~~ 417 (425)
T PRK15182 389 Q-QFKQ-MGSEDIRGFGKDKHVLYD-LKYVLP 417 (425)
T ss_pred H-Hhhc-CCHHHHHHhcCCCCEEEE-CCCCCC
Confidence 4 3333 4444444 4554568888 466653
No 360
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.81 E-value=0.058 Score=54.30 Aligned_cols=108 Identities=15% Similarity=0.152 Sum_probs=71.5
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCccccC--CHHhhhcCCCEEEEec--c-CChhh
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYAFYS--NVCELAANSDALIICC--A-LTDQT 225 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~~~--~l~ell~~aDiV~l~~--P-~t~~t 225 (331)
.+.++++.|+|+|..|.++|+.|...|.+|.++|+.... .+..... .-.+.+.++|+|+..- | ..+..
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~ 91 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL 91 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence 477899999999999999999999999999999975432 1222111 1234456789888762 2 22221
Q ss_pred -------hhhccHHHHhc-------C--CCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 020073 226 -------RRMINREVMLA-------L--GKEGIIVNVGRGAVIDENEMVRCLVRGE 265 (331)
Q Consensus 226 -------~~li~~~~l~~-------m--k~ga~lIn~srg~~vd~~al~~aL~~~~ 265 (331)
..++++-.+.. + +...+-|--+-|+.....-+...|+...
T Consensus 92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g 147 (473)
T PRK00141 92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGG 147 (473)
T ss_pred HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence 12233333321 1 2236778888899999988888888644
No 361
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.78 E-value=0.086 Score=50.34 Aligned_cols=84 Identities=20% Similarity=0.319 Sum_probs=56.3
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC------CCccc-----cCCHHhhhc---CCCEEEEeccCChh
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP------VPYAF-----YSNVCELAA---NSDALIICCALTDQ 224 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~------~~~~~-----~~~l~ell~---~aDiV~l~~P~t~~ 224 (331)
.|++|.|+|.|.+|...++.++..|. +|++.++++++ .+... ..++.+... ..|+|+-+.... .
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~-~ 247 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHP-S 247 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCH-H
Confidence 58899999999999999999999999 58888876543 12111 112333332 268888775422 1
Q ss_pred hhhhccHHHHhcCCCCcEEEEcCC
Q 020073 225 TRRMINREVMLALGKEGIIVNVGR 248 (331)
Q Consensus 225 t~~li~~~~l~~mk~ga~lIn~sr 248 (331)
+ + ...++.++++..++.++.
T Consensus 248 ~---~-~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 248 S---I-NTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred H---H-HHHHHHhhcCCEEEEEcc
Confidence 1 1 335566888888888765
No 362
>PLN02602 lactate dehydrogenase
Probab=94.76 E-value=0.082 Score=51.23 Aligned_cols=85 Identities=18% Similarity=0.333 Sum_probs=55.4
Q ss_pred ceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC-----------CC---cccc---CCHHhhhcCCCEEEEeccC-
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP-----------VP---YAFY---SNVCELAANSDALIICCAL- 221 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~-----------~~---~~~~---~~l~ell~~aDiV~l~~P~- 221 (331)
++|+|||.|.+|..+|-.+...|. ++..+|...+. .. .... .+. +.+++||+|+++.-.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence 699999999999999999886665 78899986643 00 0011 133 458999999998632
Q ss_pred -Ch-hhh-hhc--cH-------HHHhcCCCCcEEEEcC
Q 020073 222 -TD-QTR-RMI--NR-------EVMLALGKEGIIVNVG 247 (331)
Q Consensus 222 -t~-~t~-~li--~~-------~~l~~mk~ga~lIn~s 247 (331)
.+ +|+ .++ |. ..+....|.+++|+++
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 11 222 111 11 1233346788999987
No 363
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.76 E-value=0.071 Score=53.60 Aligned_cols=107 Identities=14% Similarity=0.110 Sum_probs=71.1
Q ss_pred CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--C-------Cccc--cCCHHhhhcCCCEEEEec--cC-Chh
Q 020073 159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--V-------PYAF--YSNVCELAANSDALIICC--AL-TDQ 224 (331)
Q Consensus 159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--~-------~~~~--~~~l~ell~~aDiV~l~~--P~-t~~ 224 (331)
+.|++++|+|+|.-|.+.|+.|...|++|+++|..... . .... ...-.+.+.++|+|+..- |. .+.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~ 85 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE 85 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence 56899999999999999999999999999999854321 0 0000 111234567899888763 22 221
Q ss_pred h-------hhhccHHHH--hc-CC-----CCcEEEEcCCCCccCHHHHHHHHHhCC
Q 020073 225 T-------RRMINREVM--LA-LG-----KEGIIVNVGRGAVIDENEMVRCLVRGE 265 (331)
Q Consensus 225 t-------~~li~~~~l--~~-mk-----~ga~lIn~srg~~vd~~al~~aL~~~~ 265 (331)
. ..++++-.+ .. ++ ...+-|--+-|+.-...-+...|+...
T Consensus 86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g 141 (468)
T PRK04690 86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAG 141 (468)
T ss_pred HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcC
Confidence 1 124544443 32 32 246888888999988888888887543
No 364
>PLN00106 malate dehydrogenase
Probab=94.73 E-value=0.091 Score=50.36 Aligned_cols=91 Identities=14% Similarity=0.211 Sum_probs=58.6
Q ss_pred CCceEEEEec-ChHHHHHHHHHhhCCC--EEEEECCCCCC---CC-------c--c---ccCCHHhhhcCCCEEEEeccC
Q 020073 160 GGKRVGIVGL-GNIGLQVAKRLQAFGC--NVLYNSRSKKP---VP-------Y--A---FYSNVCELAANSDALIICCAL 221 (331)
Q Consensus 160 ~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~~~~~~~---~~-------~--~---~~~~l~ell~~aDiV~l~~P~ 221 (331)
..++|+|||. |.+|..+|..|...+. ++..+|..... .+ . . ...++.+.+++||+|+++.-.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 4569999999 9999999999985444 78888876522 11 0 1 123457899999999998732
Q ss_pred --Ch-hhhh-hc--c----HH---HHhcCCCCcEEEEcCCCC
Q 020073 222 --TD-QTRR-MI--N----RE---VMLALGKEGIIVNVGRGA 250 (331)
Q Consensus 222 --t~-~t~~-li--~----~~---~l~~mk~ga~lIn~srg~ 250 (331)
.+ .++- ++ | ++ .+....+.+++|+++---
T Consensus 97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 21 1111 11 1 11 223335788999987544
No 365
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=94.67 E-value=0.54 Score=44.35 Aligned_cols=88 Identities=16% Similarity=0.225 Sum_probs=65.5
Q ss_pred CCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC---------------CC--ccccCCHHhhhcCCCEEEEecc
Q 020073 159 LGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP---------------VP--YAFYSNVCELAANSDALIICCA 220 (331)
Q Consensus 159 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~---------------~~--~~~~~~l~ell~~aDiV~l~~P 220 (331)
++|+|+..+| ..+++.++......+||+|.+..+..-. .+ .....+.+++++.+|+|..=+.
T Consensus 151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW 230 (310)
T COG0078 151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW 230 (310)
T ss_pred ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence 8999999999 5689999999999999999887664321 01 2235689999999999987654
Q ss_pred CC--hhhh-----------hhccHHHHhcCCCCcEEEEc
Q 020073 221 LT--DQTR-----------RMINREVMLALGKEGIIVNV 246 (331)
Q Consensus 221 ~t--~~t~-----------~li~~~~l~~mk~ga~lIn~ 246 (331)
.. .+.+ .-+|++.++.-+++++|.-|
T Consensus 231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC 269 (310)
T COG0078 231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHC 269 (310)
T ss_pred ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC
Confidence 32 2221 45678888888888888776
No 366
>PRK07877 hypothetical protein; Provisional
Probab=94.66 E-value=0.12 Score=54.51 Aligned_cols=77 Identities=21% Similarity=0.315 Sum_probs=56.1
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCC--EEEEECCCC--------C--C---CC-------------------cc---
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSK--------K--P---VP-------------------YA--- 200 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~--------~--~---~~-------------------~~--- 200 (331)
.|++++|+|+|+| +|..+|..|...|. +++.+|... . . .+ ..
T Consensus 104 ~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 104 RLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT 182 (722)
T ss_pred HHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence 5899999999999 99999999998884 676665321 0 0 00 00
Q ss_pred ---ccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhc
Q 020073 201 ---FYSNVCELAANSDALIICCALTDQTRRMINREVMLA 236 (331)
Q Consensus 201 ---~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~ 236 (331)
...++++++.++|+|+-|+- +-+++.++++.-..+
T Consensus 183 ~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~ 220 (722)
T PRK07877 183 DGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR 220 (722)
T ss_pred ccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence 01357889999999999885 568888898766654
No 367
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.65 E-value=0.082 Score=49.84 Aligned_cols=83 Identities=20% Similarity=0.164 Sum_probs=51.1
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCCE-EEEECCCCCCC----CccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGCN-VLYNSRSKKPV----PYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~~~~----~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l 234 (331)
.|+++.|+|.|.||...++.++.+|++ |.+.++...+. .......-++.-...|+|+-+.... . .+ ...+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~G~~-~---~~-~~~~ 218 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDASGDP-S---LI-DTLV 218 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECCCCH-H---HH-HHHH
Confidence 467899999999999999999999997 45566543321 1111111111123468777765422 1 11 3346
Q ss_pred hcCCCCcEEEEcC
Q 020073 235 LALGKEGIIVNVG 247 (331)
Q Consensus 235 ~~mk~ga~lIn~s 247 (331)
+.++++..++.++
T Consensus 219 ~~l~~~G~iv~~G 231 (308)
T TIGR01202 219 RRLAKGGEIVLAG 231 (308)
T ss_pred HhhhcCcEEEEEe
Confidence 6678888777765
No 368
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=94.65 E-value=0.063 Score=51.01 Aligned_cols=64 Identities=28% Similarity=0.329 Sum_probs=46.9
Q ss_pred CceEEEEecChHHH-HHHHHHhhCC--CEE-EEECCCCCC-------CCc-cccCCHHhhhcC--CCEEEEeccCChh
Q 020073 161 GKRVGIVGLGNIGL-QVAKRLQAFG--CNV-LYNSRSKKP-------VPY-AFYSNVCELAAN--SDALIICCALTDQ 224 (331)
Q Consensus 161 g~~vgIiG~G~IG~-~~A~~l~~~G--~~V-~~~~~~~~~-------~~~-~~~~~l~ell~~--aDiV~l~~P~t~~ 224 (331)
-.++||||+|.+++ ..+..++..+ +.+ .++++++.. .+. ..+.+++++++. -|+|++|+|..-.
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H 80 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALH 80 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhh
Confidence 35899999997775 5888888766 454 456887654 222 356799999987 4899999996644
No 369
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=94.62 E-value=0.12 Score=49.03 Aligned_cols=92 Identities=15% Similarity=0.125 Sum_probs=58.1
Q ss_pred CceEEEEecChHHHHHHHHHhh-CCCEEE-EECCCCCC--------CCccc-cCCHHhhhc-----CCCEEEEeccCChh
Q 020073 161 GKRVGIVGLGNIGLQVAKRLQA-FGCNVL-YNSRSKKP--------VPYAF-YSNVCELAA-----NSDALIICCALTDQ 224 (331)
Q Consensus 161 g~~vgIiG~G~IG~~~A~~l~~-~G~~V~-~~~~~~~~--------~~~~~-~~~l~ell~-----~aDiV~l~~P~t~~ 224 (331)
..++||||.|.||+..+..+.. -++++. +++++++. .+... +.++++++. +.|+|+.++|....
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H 83 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH 83 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence 4579999999999997776654 466765 45655432 23332 467888884 58889999875422
Q ss_pred hhhhccHHHHhcCCCCcEEEEcC---CCCc----cCHHHH
Q 020073 225 TRRMINREVMLALGKEGIIVNVG---RGAV----IDENEM 257 (331)
Q Consensus 225 t~~li~~~~l~~mk~ga~lIn~s---rg~~----vd~~al 257 (331)
-+. .....+.|..+|+-+ +|.+ |+.+++
T Consensus 84 ~e~-----a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~ 118 (302)
T PRK08300 84 VRH-----AAKLREAGIRAIDLTPAAIGPYCVPAVNLDEH 118 (302)
T ss_pred HHH-----HHHHHHcCCeEEECCccccCCcccCcCCHHHH
Confidence 111 112246788888776 3444 455555
No 370
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=94.62 E-value=0.041 Score=49.45 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=52.8
Q ss_pred EEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC--------CCc-------cccCCHHhhhcCCCEEEEeccCC-----
Q 020073 164 VGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP--------VPY-------AFYSNVCELAANSDALIICCALT----- 222 (331)
Q Consensus 164 vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~--------~~~-------~~~~~l~ell~~aDiV~l~~P~t----- 222 (331)
|.|+|. |.+|+.+++.|...|++|.+..|.... .+. ...++|.++++.+|.|++++|..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~ 80 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSHPSEL 80 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHH
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcchhhhh
Confidence 678994 999999999999999999988886532 111 11246788999999999999843
Q ss_pred hhhhhhccHHHHhcC
Q 020073 223 DQTRRMINREVMLAL 237 (331)
Q Consensus 223 ~~t~~li~~~~l~~m 237 (331)
.....++++..=+..
T Consensus 81 ~~~~~li~Aa~~agV 95 (233)
T PF05368_consen 81 EQQKNLIDAAKAAGV 95 (233)
T ss_dssp HHHHHHHHHHHHHT-
T ss_pred hhhhhHHHhhhcccc
Confidence 134556655544333
No 371
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=94.59 E-value=0.077 Score=46.59 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=47.8
Q ss_pred ceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCC---Cc--------cccCCHHhhhcCCCEEEEeccC
Q 020073 162 KRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPV---PY--------AFYSNVCELAANSDALIICCAL 221 (331)
Q Consensus 162 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~---~~--------~~~~~l~ell~~aDiV~l~~P~ 221 (331)
++|+||| .|.+|+.+++-+...|.+|+..-|++.+. .. ....++.+.+..-|+|+.+.-.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~ 72 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGA 72 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccC
Confidence 4799999 69999999999999999999998887651 11 1123556789999999998743
No 372
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.57 E-value=0.095 Score=50.27 Aligned_cols=84 Identities=24% Similarity=0.354 Sum_probs=55.1
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCC---CC------CCcccc----CCHH--hhhcCCCEEEEeccCChh
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK---KP------VPYAFY----SNVC--ELAANSDALIICCALTDQ 224 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~---~~------~~~~~~----~~l~--ell~~aDiV~l~~P~t~~ 224 (331)
.|.++.|+|.|.+|...++.++..|.+|++++++. .+ .+.... .++. ......|+|+-++....
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~- 250 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP- 250 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH-
Confidence 57899999999999999999999999999988742 22 111111 1111 12235788888764221
Q ss_pred hhhhccHHHHhcCCCCcEEEEcCC
Q 020073 225 TRRMINREVMLALGKEGIIVNVGR 248 (331)
Q Consensus 225 t~~li~~~~l~~mk~ga~lIn~sr 248 (331)
.+ .+.++.++++..++.++.
T Consensus 251 ---~~-~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 251 ---LA-FEALPALAPNGVVILFGV 270 (355)
T ss_pred ---HH-HHHHHHccCCcEEEEEec
Confidence 22 345677888887777654
No 373
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=94.57 E-value=0.04 Score=51.49 Aligned_cols=62 Identities=19% Similarity=0.225 Sum_probs=42.9
Q ss_pred CceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCCC-Cc--cccCCHH-hh-hcCCCEEEEeccCC
Q 020073 161 GKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKPV-PY--AFYSNVC-EL-AANSDALIICCALT 222 (331)
Q Consensus 161 g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~-~~--~~~~~l~-el-l~~aDiV~l~~P~t 222 (331)
++++.|+|.|..+++++..|...|+ +|.+++|+.++. .. ....+.. ++ ...+|+|+.|+|..
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~~~~~~dlvINaTp~G 189 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDLGGIEADILVNVTPIG 189 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhcccccCCEEEECCccc
Confidence 4689999999999999999999998 599999987541 00 0001111 11 24578888887754
No 374
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=94.56 E-value=0.12 Score=49.39 Aligned_cols=77 Identities=22% Similarity=0.307 Sum_probs=51.3
Q ss_pred ceEEEEe-cChHHHHHHHHHhhCC-CEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCC
Q 020073 162 KRVGIVG-LGNIGLQVAKRLQAFG-CNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGK 239 (331)
Q Consensus 162 ~~vgIiG-~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ 239 (331)
.+|+||| .|-.|+++.+.|...- +++.....+... .. .+.++.+.++|+|++|+|... ...+. .+. .+.
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-~~---~~~~~~~~~~DvvFlalp~~~-s~~~~-~~~---~~~ 73 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-DA---AARRELLNAADVAILCLPDDA-AREAV-ALI---DNP 73 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-cc---cCchhhhcCCCEEEECCCHHH-HHHHH-HHH---HhC
Confidence 4799999 8999999999998643 366555433222 11 233456688999999998653 22232 212 256
Q ss_pred CcEEEEcC
Q 020073 240 EGIIVNVG 247 (331)
Q Consensus 240 ga~lIn~s 247 (331)
|..+||.|
T Consensus 74 g~~VIDlS 81 (313)
T PRK11863 74 ATRVIDAS 81 (313)
T ss_pred CCEEEECC
Confidence 88899988
No 375
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.46 E-value=0.26 Score=49.54 Aligned_cols=108 Identities=17% Similarity=0.159 Sum_probs=71.5
Q ss_pred CccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----------CCcccc--CCHHhhhcCCCEEEEec---
Q 020073 156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------VPYAFY--SNVCELAANSDALIICC--- 219 (331)
Q Consensus 156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------~~~~~~--~~l~ell~~aDiV~l~~--- 219 (331)
+..+.++++.|||.|.+|.++|+.|+..|.+|.++++.... .+.... ... +....+|+|+++.
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~-~~~~~~D~Vv~s~Gi~ 89 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGP-TLPEDTDLVVTSPGWR 89 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc-cccCCCCEEEECCCcC
Confidence 44678999999999999999999999999999999865421 121111 111 1345689999886
Q ss_pred cCChhh-----hh--hccH-HHH-hcCC----CCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073 220 ALTDQT-----RR--MINR-EVM-LALG----KEGIIVNVGRGAVIDENEMVRCLVRG 264 (331)
Q Consensus 220 P~t~~t-----~~--li~~-~~l-~~mk----~ga~lIn~srg~~vd~~al~~aL~~~ 264 (331)
|.++.. .+ +++. +.+ ..+. ...+-|--+.|+.-...-+...|+..
T Consensus 90 ~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~ 147 (480)
T PRK01438 90 PDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAA 147 (480)
T ss_pred CCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHc
Confidence 334321 11 2333 222 2332 23578888889998888888888764
No 376
>PTZ00325 malate dehydrogenase; Provisional
Probab=94.45 E-value=0.11 Score=49.83 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=44.6
Q ss_pred CCCceEEEEec-ChHHHHHHHHHhhCC--CEEEEECCCCCC---CC-------ccc--c---CCHHhhhcCCCEEEEecc
Q 020073 159 LGGKRVGIVGL-GNIGLQVAKRLQAFG--CNVLYNSRSKKP---VP-------YAF--Y---SNVCELAANSDALIICCA 220 (331)
Q Consensus 159 l~g~~vgIiG~-G~IG~~~A~~l~~~G--~~V~~~~~~~~~---~~-------~~~--~---~~l~ell~~aDiV~l~~P 220 (331)
++.++|+|||. |.||..+|..+...+ .++..+|..... .+ ... . .+..+.+++||+|++++-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 56789999999 999999999998444 478888873221 11 111 1 122679999999998873
No 377
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=94.42 E-value=0.51 Score=44.47 Aligned_cols=104 Identities=15% Similarity=0.155 Sum_probs=70.4
Q ss_pred CceEEEEe-cChHHHHHHHHHhhCCCEEE-EECCC--CCC-CCccccCCHHhhhcC--CCEEEEeccCChhhhhhccHHH
Q 020073 161 GKRVGIVG-LGNIGLQVAKRLQAFGCNVL-YNSRS--KKP-VPYAFYSNVCELAAN--SDALIICCALTDQTRRMINREV 233 (331)
Q Consensus 161 g~~vgIiG-~G~IG~~~A~~l~~~G~~V~-~~~~~--~~~-~~~~~~~~l~ell~~--aDiV~l~~P~t~~t~~li~~~~ 233 (331)
+.+|.|.| .|.+|+.+-+.+.+.|++++ .+++. ... .+...+.+++++-.. .|++++++|.. .+...+.+ .
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~-~v~~~l~e-~ 83 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAP-FAADAIFE-A 83 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHH-HHHHHHHH-H
Confidence 46799999 79999999999999898743 45555 222 455667899998887 79999999944 44444422 2
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073 234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA 267 (331)
Q Consensus 234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ 267 (331)
.++=-+.++++.-+-+. -+++.|.+..+++.++
T Consensus 84 ~~~Gvk~avIis~Gf~e-~~~~~l~~~a~~~gir 116 (286)
T TIGR01019 84 IDAGIELIVCITEGIPV-HDMLKVKRYMEESGTR 116 (286)
T ss_pred HHCCCCEEEEECCCCCH-HHHHHHHHHHHHcCCE
Confidence 22211234454444333 3677888888888765
No 378
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.38 E-value=0.095 Score=49.87 Aligned_cols=58 Identities=16% Similarity=0.295 Sum_probs=42.3
Q ss_pred eEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC---------C--Cc------cccCCHHhhhcCCCEEEEecc
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP---------V--PY------AFYSNVCELAANSDALIICCA 220 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~---------~--~~------~~~~~l~ell~~aDiV~l~~P 220 (331)
+|+|||.|.+|..+|-.+...|. +++.+|...+. . .+ .....-.+.+++||+|+++.-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 58999999999999998876565 78899986543 0 10 011122478999999999873
No 379
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=94.29 E-value=0.17 Score=48.88 Aligned_cols=84 Identities=23% Similarity=0.306 Sum_probs=52.0
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCccc---cC---CHHhhhcCCCEEEEeccCChhhh
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYAF---YS---NVCELAANSDALIICCALTDQTR 226 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~---~~---~l~ell~~aDiV~l~~P~t~~t~ 226 (331)
.|++|.|.|.|.+|..+++.++.+|.+|++.+.+..+ .+... .. .+.+.....|+|+-+.... .
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~-~-- 259 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAV-H-- 259 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCH-H--
Confidence 5789999999999999999999999998876554322 11110 01 1223333467777665321 1
Q ss_pred hhccHHHHhcCCCCcEEEEcCC
Q 020073 227 RMINREVMLALGKEGIIVNVGR 248 (331)
Q Consensus 227 ~li~~~~l~~mk~ga~lIn~sr 248 (331)
.+ ...++.++++..++.++.
T Consensus 260 -~~-~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 260 -AL-GPLLGLLKVNGKLITLGL 279 (360)
T ss_pred -HH-HHHHHHhcCCcEEEEeCC
Confidence 11 224556777777776653
No 380
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.28 E-value=0.089 Score=39.26 Aligned_cols=34 Identities=35% Similarity=0.534 Sum_probs=30.9
Q ss_pred eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP 196 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~ 196 (331)
++.|||.|.+|-++|..++.+|.+|+.+.+.+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 5889999999999999999999999998887654
No 381
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.27 E-value=0.045 Score=57.09 Aligned_cols=82 Identities=20% Similarity=0.204 Sum_probs=55.4
Q ss_pred CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc-c---cCC---HHh-hhcCCCEEEEeccCChhhh
Q 020073 161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA-F---YSN---VCE-LAANSDALIICCALTDQTR 226 (331)
Q Consensus 161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~-~---~~~---l~e-ll~~aDiV~l~~P~t~~t~ 226 (331)
..++-|+|+|++|+.+|+.|...|.++++.|.+++. .+.. . ..+ |++ -+.++|.|+++++.++.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 467999999999999999999999999999887654 1111 1 112 332 3678999999997665554
Q ss_pred hhccHHHHhcCCCCcEEE
Q 020073 227 RMINREVMLALGKEGIIV 244 (331)
Q Consensus 227 ~li~~~~l~~mk~ga~lI 244 (331)
.++ ....++-|...++
T Consensus 480 ~i~--~~ar~~~p~~~ii 495 (621)
T PRK03562 480 QLV--ELVKEHFPHLQII 495 (621)
T ss_pred HHH--HHHHHhCCCCeEE
Confidence 443 2333344554444
No 382
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=94.27 E-value=0.24 Score=47.23 Aligned_cols=86 Identities=14% Similarity=0.196 Sum_probs=55.6
Q ss_pred eEEEEec-ChHHHHHHHHHhhCCC--EEEEECCCCCC-------CC---cccc-----CCHHhhhcCCCEEEEeccC--C
Q 020073 163 RVGIVGL-GNIGLQVAKRLQAFGC--NVLYNSRSKKP-------VP---YAFY-----SNVCELAANSDALIICCAL--T 222 (331)
Q Consensus 163 ~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~~~~~~~-------~~---~~~~-----~~l~ell~~aDiV~l~~P~--t 222 (331)
+|+|||. |.+|..+|-.+...|. ++..+|..... .. .... .++.+.+++||+|+++.-. .
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 5899999 9999999998876554 78889876632 00 0111 1346899999999998743 2
Q ss_pred h-hhhh-hc--cHH-------HHhcCCCCcEEEEcCC
Q 020073 223 D-QTRR-MI--NRE-------VMLALGKEGIIVNVGR 248 (331)
Q Consensus 223 ~-~t~~-li--~~~-------~l~~mk~ga~lIn~sr 248 (331)
+ .++- ++ |.+ .+..-.|.+++|+++-
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN 117 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN 117 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 1 1111 11 111 2333468899999874
No 383
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=94.27 E-value=0.56 Score=44.74 Aligned_cols=61 Identities=13% Similarity=0.154 Sum_probs=48.4
Q ss_pred cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC-------------CC-ccccCCHHhhhcCCCEEEEe
Q 020073 158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP-------------VP-YAFYSNVCELAANSDALIIC 218 (331)
Q Consensus 158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~-------------~~-~~~~~~l~ell~~aDiV~l~ 218 (331)
.+.|++|++||- +++.++++..+..+|++|.+..+..-. .+ .....+++++++++|+|..-
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d 225 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTD 225 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEee
Confidence 478999999996 799999999999999999988774421 01 12246899999999999974
No 384
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.22 E-value=0.051 Score=44.91 Aligned_cols=33 Identities=36% Similarity=0.541 Sum_probs=28.5
Q ss_pred CceEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073 161 GKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS 193 (331)
Q Consensus 161 g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~ 193 (331)
+++|.|+|+|.+|..+|+.|...|+ ++..+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 5799999999999999999998898 68887753
No 385
>CHL00194 ycf39 Ycf39; Provisional
Probab=94.21 E-value=0.088 Score=49.78 Aligned_cols=59 Identities=15% Similarity=0.157 Sum_probs=44.8
Q ss_pred ceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC------CCc-------cccCCHHhhhcCCCEEEEecc
Q 020073 162 KRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPY-------AFYSNVCELAANSDALIICCA 220 (331)
Q Consensus 162 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~-------~~~~~l~ell~~aDiV~l~~P 220 (331)
++|.|.| .|.||+.+++.|...|++|.+..|+..+ .+. ....++.++++.+|+|+.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 3789999 6999999999999999999998886432 111 112356788999999887654
No 386
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=94.21 E-value=0.11 Score=48.02 Aligned_cols=60 Identities=18% Similarity=0.121 Sum_probs=45.0
Q ss_pred eEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC---CC-------ccccCCHHhhh------cC-CCEEEEeccCC
Q 020073 163 RVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP---VP-------YAFYSNVCELA------AN-SDALIICCALT 222 (331)
Q Consensus 163 ~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~---~~-------~~~~~~l~ell------~~-aDiV~l~~P~t 222 (331)
+|.|.|. |.+|+.+++.|...|.+|.+..|++.. .+ .....++.+++ .. +|.|+++.|..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~ 78 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI 78 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCC
Confidence 4778885 999999999999999999999887643 11 11124566677 45 89999888754
No 387
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=94.19 E-value=0.081 Score=44.79 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=51.6
Q ss_pred CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC----CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc---H
Q 020073 159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP----VPYAFYSNVCELAANSDALIICCALTDQTRRMIN---R 231 (331)
Q Consensus 159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~---~ 231 (331)
..|++|++||+= +.++++++..+.++.++++++.. ..........+++++||+|++.-. -++| .
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs------TlvN~Ti~ 79 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS------TLVNGTID 79 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH------HCCTTTHH
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee------eeecCCHH
Confidence 468999999961 13788888788999999998744 111234567789999999988632 1232 3
Q ss_pred HHHhcCCCCcEEEEcC
Q 020073 232 EVMLALGKEGIIVNVG 247 (331)
Q Consensus 232 ~~l~~mk~ga~lIn~s 247 (331)
+.+++.++++.++=++
T Consensus 80 ~iL~~~~~~~~vil~G 95 (147)
T PF04016_consen 80 DILELARNAREVILYG 95 (147)
T ss_dssp HHHHHTTTSSEEEEES
T ss_pred HHHHhCccCCeEEEEe
Confidence 4556666566555443
No 388
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.14 E-value=0.13 Score=47.71 Aligned_cols=36 Identities=36% Similarity=0.492 Sum_probs=31.3
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCCE-EEEECCCCC
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGCN-VLYNSRSKK 195 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~~ 195 (331)
.|.+|.|+|.|.+|..+++.++.+|.+ |++.+++..
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~ 156 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPD 156 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 578999999999999999999999996 877776543
No 389
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=94.11 E-value=0.31 Score=46.99 Aligned_cols=61 Identities=13% Similarity=0.143 Sum_probs=46.2
Q ss_pred cCCCceEEEEec---ChHHHHHHHHHh-hCCCEEEEECCCCCC-----C------C--ccccCCHHhhhcCCCEEEEe
Q 020073 158 KLGGKRVGIVGL---GNIGLQVAKRLQ-AFGCNVLYNSRSKKP-----V------P--YAFYSNVCELAANSDALIIC 218 (331)
Q Consensus 158 ~l~g~~vgIiG~---G~IG~~~A~~l~-~~G~~V~~~~~~~~~-----~------~--~~~~~~l~ell~~aDiV~l~ 218 (331)
++.|++|++||= +++..+.+..+. -+|++|.+..+..-. . + .....+++++++++|+|..-
T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 233 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT 233 (338)
T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence 588999999997 588889888766 459999888765321 0 1 22347899999999999873
No 390
>PRK06182 short chain dehydrogenase; Validated
Probab=94.08 E-value=0.095 Score=48.14 Aligned_cols=36 Identities=31% Similarity=0.326 Sum_probs=31.9
Q ss_pred CCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073 160 GGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK 195 (331)
Q Consensus 160 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~ 195 (331)
.++++.|.| .|.||+++|+.|...|++|++.+|+.+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~ 38 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVD 38 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 478999999 599999999999999999999888754
No 391
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=94.01 E-value=0.42 Score=39.86 Aligned_cols=92 Identities=17% Similarity=0.239 Sum_probs=63.8
Q ss_pred HHHHHHhhCCCEEEEECCCCCC----------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEE
Q 020073 175 QVAKRLQAFGCNVLYNSRSKKP----------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIV 244 (331)
Q Consensus 175 ~~A~~l~~~G~~V~~~~~~~~~----------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lI 244 (331)
..+++|...|++|++=.-.... .+.....+-++++++||+|+-.-|.+ .+.+++|++|.++|
T Consensus 18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li 89 (136)
T PF05222_consen 18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLI 89 (136)
T ss_dssp HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEE
Confidence 5678888889999875443222 23333445668999999988765543 45677899999999
Q ss_pred EcCCCCccCHHHHHHHHHhCCceEEEeecCCC
Q 020073 245 NVGRGAVIDENEMVRCLVRGEIAGAGLDVFEN 276 (331)
Q Consensus 245 n~srg~~vd~~al~~aL~~~~i~ga~lDV~~~ 276 (331)
-...-. ....+++.|.+.++...++|-...
T Consensus 90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 90 GFLHPA--QNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp EE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred Eeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence 776555 588899999999999888876544
No 392
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=94.01 E-value=0.17 Score=47.91 Aligned_cols=82 Identities=23% Similarity=0.350 Sum_probs=52.8
Q ss_pred EEecChHHHHHHHHHhhCCC--EEEEECCCCCC-----------C-----CccccCCHHhhhcCCCEEEEeccC--Ch-h
Q 020073 166 IVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP-----------V-----PYAFYSNVCELAANSDALIICCAL--TD-Q 224 (331)
Q Consensus 166 IiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~-----------~-----~~~~~~~l~ell~~aDiV~l~~P~--t~-~ 224 (331)
|||.|.+|..+|..+...+. ++..+|..... . ......+-.+.+++||+|+++.-. .+ .
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~ 80 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE 80 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence 69999999999999976665 79999986543 0 001112335789999999998732 21 1
Q ss_pred hh--------hhcc--HHHHhcCCCCcEEEEcC
Q 020073 225 TR--------RMIN--REVMLALGKEGIIVNVG 247 (331)
Q Consensus 225 t~--------~li~--~~~l~~mk~ga~lIn~s 247 (331)
++ .++. ...+.+..|.+++|+++
T Consensus 81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 113 (299)
T TIGR01771 81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT 113 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 11 1121 12233346889999886
No 393
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=93.96 E-value=0.23 Score=46.69 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=50.3
Q ss_pred ceEEEEecChHHHHHHHHHh-hCCCEEE-EECCCCCC--------CCcc-ccCCHHhhhc--CCCEEEEeccCChhhhhh
Q 020073 162 KRVGIVGLGNIGLQVAKRLQ-AFGCNVL-YNSRSKKP--------VPYA-FYSNVCELAA--NSDALIICCALTDQTRRM 228 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~-~~G~~V~-~~~~~~~~--------~~~~-~~~~l~ell~--~aDiV~l~~P~t~~t~~l 228 (331)
.++||||.|.||+..+..+. .-++++. ++++.++. .+.. .+.+.++++. +-|+|+.++|........
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a 81 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHA 81 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence 37999999999998876665 3467765 45655432 2222 3457888875 578899998865332221
Q ss_pred ccHHHHhcCCCCcEEEEc
Q 020073 229 INREVMLALGKEGIIVNV 246 (331)
Q Consensus 229 i~~~~l~~mk~ga~lIn~ 246 (331)
...++.|..+|+-
T Consensus 82 -----~~al~aGk~VIde 94 (285)
T TIGR03215 82 -----RLLAELGKIVIDL 94 (285)
T ss_pred -----HHHHHcCCEEEEC
Confidence 2224556655444
No 394
>PRK04148 hypothetical protein; Provisional
Probab=93.88 E-value=0.097 Score=43.64 Aligned_cols=62 Identities=19% Similarity=0.279 Sum_probs=45.0
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--------CCcc---ccCCHHhhhcCCCEEEEeccCC
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--------VPYA---FYSNVCELAANSDALIICCALT 222 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--------~~~~---~~~~l~ell~~aDiV~l~~P~t 222 (331)
+++++.+||+| -|..+|..|+..|.+|++.|.++.. .... .+..--++.+.+|+|-..-|..
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~ 88 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPR 88 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCH
Confidence 46789999999 9999999999999999999988763 0110 1122235667778777766633
No 395
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=93.86 E-value=0.2 Score=46.23 Aligned_cols=122 Identities=20% Similarity=0.222 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhC----CC-------EEE
Q 020073 120 AADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAF----GC-------NVL 188 (331)
Q Consensus 120 vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~----G~-------~V~ 188 (331)
+|-.+++-+|+.+|- .|++|...++.|+|.|.-|-.+|+.+... |. +|+
T Consensus 4 TaaV~lAgll~Al~~--------------------~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~ 63 (255)
T PF03949_consen 4 TAAVVLAGLLNALRV--------------------TGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIW 63 (255)
T ss_dssp HHHHHHHHHHHHHHH--------------------HTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEE
T ss_pred hHHHHHHHHHHHHHH--------------------hCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEE
Confidence 556677777776664 24568999999999999999999999876 87 488
Q ss_pred EECCCC------CC---------CC---ccccCCHHhhhcCC--CEEEEeccCChhhhhhccHHHHhcCCC---CcEEEE
Q 020073 189 YNSRSK------KP---------VP---YAFYSNVCELAANS--DALIICCALTDQTRRMINREVMLALGK---EGIIVN 245 (331)
Q Consensus 189 ~~~~~~------~~---------~~---~~~~~~l~ell~~a--DiV~l~~P~t~~t~~li~~~~l~~mk~---ga~lIn 245 (331)
.+|+.. .. .. .....+|.|+++.+ |+++-+- ...++++++.++.|.+ ..++.=
T Consensus 64 lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~~~erPIIF~ 139 (255)
T PF03949_consen 64 LVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAKHNERPIIFP 139 (255)
T ss_dssp EEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHHHCHHHSSSEEEEE
T ss_pred EEeccceEeccCccCChhhhhhhccCcccccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHHHHhccCCCCEEEE
Confidence 887652 11 01 11124899999998 9888652 2567899999999977 889999
Q ss_pred cCCCCccCHHHHHHHHHhCC
Q 020073 246 VGRGAVIDENEMVRCLVRGE 265 (331)
Q Consensus 246 ~srg~~vd~~al~~aL~~~~ 265 (331)
.|...---|-.-.++.+-+.
T Consensus 140 LSNPt~~aE~~peda~~~t~ 159 (255)
T PF03949_consen 140 LSNPTPKAECTPEDAYEWTD 159 (255)
T ss_dssp -SSSCGGSSS-HHHHHHTTT
T ss_pred CCCCCCcccCCHHHHHhhCC
Confidence 88877644444444444443
No 396
>PRK14851 hypothetical protein; Provisional
Probab=93.73 E-value=0.17 Score=53.18 Aligned_cols=159 Identities=13% Similarity=0.086 Sum_probs=87.2
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------CC-------------------cc--
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------VP-------------------YA-- 200 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~~-------------------~~-- 200 (331)
..|++++|+|+|+|.+|..+|..|...|. ++..+|...-. .+ ..
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~ 118 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPF 118 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 35899999999999999999999998887 56665532100 00 00
Q ss_pred ----ccCCHHhhhcCCCEEEEeccC-ChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCC
Q 020073 201 ----FYSNVCELAANSDALIICCAL-TDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFE 275 (331)
Q Consensus 201 ----~~~~l~ell~~aDiV~l~~P~-t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~ 275 (331)
...++++++.++|+|+-|+-. +-+++.++++.-. +.+.-+|..+-.+. ...+....-+.. .--|.|.
T Consensus 119 ~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~---~~~iP~i~~g~~G~---~g~~~~~~p~~~--~~~~~~~ 190 (679)
T PRK14851 119 PAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAR---EKGIPVITAGPLGY---SSAMLVFTPQGM--GFDDYFN 190 (679)
T ss_pred ecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHH---HCCCCEEEeecccc---cceEEEEcCCCC--CHhHhcc
Confidence 012456778888888877743 2244555554332 22333444331000 000000000000 0112333
Q ss_pred CCCC--------------CCC----ccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 020073 276 NEPY--------------VPK----ELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQP 323 (331)
Q Consensus 276 ~EP~--------------~~~----~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~ 323 (331)
-+|. .|. ...+..+|=++-+-+-++.-....+...+.....+++.|+.
T Consensus 191 ~~~~~~~~~~~~~~~~g~~p~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (679)
T PRK14851 191 IGGKMPEEQKYLRFAMGLAPRPTHIKYMDLSKVDLKGGKGPSLNIACQLCSGMAGTEAVRIILGKG 256 (679)
T ss_pred CCCCCChHHHHHHHHhcCCCcchhhccCcHhhcCCccCcCCCccHHHHhhhhhHHHHHHHHhhcCC
Confidence 3332 111 22355677778888888877777777777777777776553
No 397
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.69 E-value=0.18 Score=50.50 Aligned_cols=104 Identities=15% Similarity=0.152 Sum_probs=67.5
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCC-------Ccccc-CCHHhhhcCCCEEEEec--cC-Chhh---
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV-------PYAFY-SNVCELAANSDALIICC--AL-TDQT--- 225 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-------~~~~~-~~l~ell~~aDiV~l~~--P~-t~~t--- 225 (331)
.|++|+|+|+|.-|.++|+.|+. |.+|+++|...... ..... ..-.+.+.++|+|+..= |. ++..
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a 83 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA 83 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence 57899999999999999999995 99999999543221 00001 11224567899887753 21 2211
Q ss_pred ----hhhccHHHH--hcCCC-CcEEEEcCCCCccCHHHHHHHHHhC
Q 020073 226 ----RRMINREVM--LALGK-EGIIVNVGRGAVIDENEMVRCLVRG 264 (331)
Q Consensus 226 ----~~li~~~~l--~~mk~-ga~lIn~srg~~vd~~al~~aL~~~ 264 (331)
..++++-.+ ..++. ..+-|--+.|+.....-+...|+..
T Consensus 84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~ 129 (454)
T PRK01368 84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSN 129 (454)
T ss_pred HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence 123433333 22332 3677888889999988888888863
No 398
>PRK06392 homoserine dehydrogenase; Provisional
Probab=93.69 E-value=0.31 Score=46.74 Aligned_cols=102 Identities=17% Similarity=0.272 Sum_probs=61.3
Q ss_pred eEEEEecChHHHHHHHHHhh--------CCCEEEE-ECCCCCC---CC--------------cc-c-cC--CHHhhh-cC
Q 020073 163 RVGIVGLGNIGLQVAKRLQA--------FGCNVLY-NSRSKKP---VP--------------YA-F-YS--NVCELA-AN 211 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~--------~G~~V~~-~~~~~~~---~~--------------~~-~-~~--~l~ell-~~ 211 (331)
+|+|+|+|.+|+.+++.+.. ++.+|++ .+++..- .+ .. . .. ++++++ .+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~ 81 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK 81 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence 79999999999999999865 4567654 3443211 10 00 0 11 455543 46
Q ss_pred CCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCcc-CHHHHHHHHHhCC
Q 020073 212 SDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVI-DENEMVRCLVRGE 265 (331)
Q Consensus 212 aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~v-d~~al~~aL~~~~ 265 (331)
+|+|+=|.|....-..-. .-..+.++.|.-+|-.+-|.+. .-+.|.++.+++.
T Consensus 82 ~DVvVE~t~~~~~g~~~~-~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g 135 (326)
T PRK06392 82 PDVIVDVTPASKDGIREK-NLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNR 135 (326)
T ss_pred CCEEEECCCCCCcCchHH-HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcC
Confidence 899999987532101011 1123446788888888877775 4556666666554
No 399
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=93.69 E-value=0.24 Score=47.10 Aligned_cols=76 Identities=22% Similarity=0.312 Sum_probs=51.2
Q ss_pred eEEEEe-cChHHHHHHHHHhhC-CCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCC
Q 020073 163 RVGIVG-LGNIGLQVAKRLQAF-GCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKE 240 (331)
Q Consensus 163 ~vgIiG-~G~IG~~~A~~l~~~-G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~g 240 (331)
+|+|+| .|-.|.++.++|... .+++........ . ...+.+++++++|++++|+|.. .+..+.. .. .+.|
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~---~-~~~~~~~~~~~~D~vFlalp~~-~s~~~~~-~~---~~~g 73 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR---K-DAAERAKLLNAADVAILCLPDD-AAREAVS-LV---DNPN 73 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc---c-CcCCHhHhhcCCCEEEECCCHH-HHHHHHH-HH---HhCC
Confidence 699999 799999999999864 346554432211 1 1124567778999999999865 3333332 11 2468
Q ss_pred cEEEEcC
Q 020073 241 GIIVNVG 247 (331)
Q Consensus 241 a~lIn~s 247 (331)
..+||.|
T Consensus 74 ~~VIDlS 80 (310)
T TIGR01851 74 TCIIDAS 80 (310)
T ss_pred CEEEECC
Confidence 8899988
No 400
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.64 E-value=0.2 Score=47.95 Aligned_cols=95 Identities=16% Similarity=0.233 Sum_probs=58.4
Q ss_pred ceEEEEec-ChHHHHHHHHHhhCCC-------EEEEECCCCCC-------C-------C----ccccCCHHhhhcCCCEE
Q 020073 162 KRVGIVGL-GNIGLQVAKRLQAFGC-------NVLYNSRSKKP-------V-------P----YAFYSNVCELAANSDAL 215 (331)
Q Consensus 162 ~~vgIiG~-G~IG~~~A~~l~~~G~-------~V~~~~~~~~~-------~-------~----~~~~~~l~ell~~aDiV 215 (331)
++|+|||. |.+|..+|-.+...|. +++.+|..... . . .....+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 48999999 9999999999876554 68888874321 0 0 01113456889999999
Q ss_pred EEeccC--Ch-hhhh-hc--cHH-------HHhcCC-CCcEEEEcCCCCccCHHHHH
Q 020073 216 IICCAL--TD-QTRR-MI--NRE-------VMLALG-KEGIIVNVGRGAVIDENEMV 258 (331)
Q Consensus 216 ~l~~P~--t~-~t~~-li--~~~-------~l~~mk-~ga~lIn~srg~~vd~~al~ 258 (331)
+++.-. .+ +|+- ++ |.+ .+.... +.+++|.++ ..+|.-.-+
T Consensus 83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~ 137 (322)
T cd01338 83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALI 137 (322)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHH
Confidence 998733 22 1211 11 111 222234 588889886 445554433
No 401
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=93.62 E-value=0.31 Score=46.31 Aligned_cols=58 Identities=28% Similarity=0.319 Sum_probs=42.5
Q ss_pred ceEEEEec-ChHHHHHHHHHhhCCC--EEEEECCCC--CC-----CC-----------ccc--cCCHHhhhcCCCEEEEe
Q 020073 162 KRVGIVGL-GNIGLQVAKRLQAFGC--NVLYNSRSK--KP-----VP-----------YAF--YSNVCELAANSDALIIC 218 (331)
Q Consensus 162 ~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~~~~~--~~-----~~-----------~~~--~~~l~ell~~aDiV~l~ 218 (331)
++|+|+|. |.+|..+|..+...|. +|+.+|+.. +. .+ ... ..+ .+.+++||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEe
Confidence 47999997 9999999999988776 588888844 22 00 001 123 3569999999999
Q ss_pred cc
Q 020073 219 CA 220 (331)
Q Consensus 219 ~P 220 (331)
..
T Consensus 80 ag 81 (309)
T cd05294 80 AG 81 (309)
T ss_pred cC
Confidence 85
No 402
>PRK06398 aldose dehydrogenase; Validated
Probab=93.61 E-value=0.18 Score=46.11 Aligned_cols=38 Identities=29% Similarity=0.314 Sum_probs=34.0
Q ss_pred cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073 158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK 195 (331)
Q Consensus 158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~ 195 (331)
+++||++.|.| .|.||+++|+.|...|++|+..+|+..
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~ 41 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP 41 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 47899999999 579999999999999999999888754
No 403
>PRK10206 putative oxidoreductase; Provisional
Probab=93.59 E-value=0.13 Score=49.69 Aligned_cols=62 Identities=16% Similarity=0.274 Sum_probs=42.6
Q ss_pred eEEEEecChHHHH-HHHHHhh--CCCEEE-EECCCCCC------CC-ccccCCHHhhhc--CCCEEEEeccCChh
Q 020073 163 RVGIVGLGNIGLQ-VAKRLQA--FGCNVL-YNSRSKKP------VP-YAFYSNVCELAA--NSDALIICCALTDQ 224 (331)
Q Consensus 163 ~vgIiG~G~IG~~-~A~~l~~--~G~~V~-~~~~~~~~------~~-~~~~~~l~ell~--~aDiV~l~~P~t~~ 224 (331)
++||||+|.|++. .+..+.. -+++|. ++|++++. .+ ...+.++++++. +.|+|++++|....
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H 77 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH 77 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHH
Confidence 7999999998863 3554432 257775 57776532 11 234578999996 57999999986643
No 404
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=93.54 E-value=0.9 Score=43.75 Aligned_cols=89 Identities=9% Similarity=0.058 Sum_probs=61.9
Q ss_pred cCCCceEEEEecC--hHHHHHHHHHhhCCCEEEEECCCCCC-----C----------C--ccccCCHHhhhcCCCEEEEe
Q 020073 158 KLGGKRVGIVGLG--NIGLQVAKRLQAFGCNVLYNSRSKKP-----V----------P--YAFYSNVCELAANSDALIIC 218 (331)
Q Consensus 158 ~l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~-----~----------~--~~~~~~l~ell~~aDiV~l~ 218 (331)
.+.|.+|++||-+ ++.++++..+..+|++|.+..+..-. . + .....+++++++++|+|..-
T Consensus 153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 232 (334)
T PRK12562 153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD 232 (334)
T ss_pred CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4789999999975 78999999999999999888764311 0 1 12247899999999999875
Q ss_pred c------cCC--hh-----hhhhccHHHHhcC-CCCcEEEEc
Q 020073 219 C------ALT--DQ-----TRRMINREVMLAL-GKEGIIVNV 246 (331)
Q Consensus 219 ~------P~t--~~-----t~~li~~~~l~~m-k~ga~lIn~ 246 (331)
. ... ++ -..-++++.++.. |+++++.-+
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHc 274 (334)
T PRK12562 233 VWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHC 274 (334)
T ss_pred CccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECC
Confidence 3 000 00 1223467777764 677777665
No 405
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=93.49 E-value=0.22 Score=47.99 Aligned_cols=83 Identities=10% Similarity=0.173 Sum_probs=51.9
Q ss_pred CCceEEEEe-cChHHHHHHHHHhh--C-CCEEEEECCC--CCC-C---C-ccccCCHHhh-hcCCCEEEEeccCChhhhh
Q 020073 160 GGKRVGIVG-LGNIGLQVAKRLQA--F-GCNVLYNSRS--KKP-V---P-YAFYSNVCEL-AANSDALIICCALTDQTRR 227 (331)
Q Consensus 160 ~g~~vgIiG-~G~IG~~~A~~l~~--~-G~~V~~~~~~--~~~-~---~-~~~~~~l~el-l~~aDiV~l~~P~t~~t~~ 227 (331)
++.+|+||| .|-+|+++.+.|.. + ..++..+... ..+ . + .....++++. +.++|++++++|.. ....
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~-~s~~ 81 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGRE-ASAA 81 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHH-HHHH
Confidence 456899999 59999999999987 3 2365544322 221 1 1 1112345554 37899999999855 2222
Q ss_pred hccHHHHhcCCCCcEEEEcC
Q 020073 228 MINREVMLALGKEGIIVNVG 247 (331)
Q Consensus 228 li~~~~l~~mk~ga~lIn~s 247 (331)
+. .+. .+.|..+|+.|
T Consensus 82 ~~-~~~---~~~g~~VIDlS 97 (336)
T PRK08040 82 YA-EEA---TNAGCLVIDSS 97 (336)
T ss_pred HH-HHH---HHCCCEEEECC
Confidence 22 212 25688999988
No 406
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=93.41 E-value=0.087 Score=57.70 Aligned_cols=89 Identities=12% Similarity=0.201 Sum_probs=62.6
Q ss_pred CCCceEEEEecChHHHHHHHHHhhCCCEE-------------------------EEE--CCC-----CCC------CCc-
Q 020073 159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNV-------------------------LYN--SRS-----KKP------VPY- 199 (331)
Q Consensus 159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V-------------------------~~~--~~~-----~~~------~~~- 199 (331)
+.-.++.|+|.|++|+..++.+.++|++. ++. .+. ..+ ..+
T Consensus 201 v~P~~vVi~G~G~Vg~gA~~i~~~lg~~~v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~y~ 280 (1042)
T PLN02819 201 ICPLVFVFTGSGNVSQGAQEIFKLLPHTFVEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKADYY 280 (1042)
T ss_pred CCCeEEEEeCCchHHHHHHHHHhhcCCCccCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhhhc
Confidence 44578999999999999999999886541 100 000 000 000
Q ss_pred ----cccCC-HHhhhcCCCEEEEeccCChhhhhhccHH-HHhcCCCCc----EEEEcC
Q 020073 200 ----AFYSN-VCELAANSDALIICCALTDQTRRMINRE-VMLALGKEG----IIVNVG 247 (331)
Q Consensus 200 ----~~~~~-l~ell~~aDiV~l~~P~t~~t~~li~~~-~l~~mk~ga----~lIn~s 247 (331)
.+... +++.++.+|+|+.|+-..+.+-.++..+ ..+.||+|. ++++++
T Consensus 281 ~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs 338 (1042)
T PLN02819 281 AHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT 338 (1042)
T ss_pred cCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence 01111 4568899999999998788888899888 777899998 899887
No 407
>PLN02214 cinnamoyl-CoA reductase
Probab=93.39 E-value=0.24 Score=47.50 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=46.5
Q ss_pred CCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC--------C-----Cc-------cccCCHHhhhcCCCEEEE
Q 020073 159 LGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP--------V-----PY-------AFYSNVCELAANSDALII 217 (331)
Q Consensus 159 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~--------~-----~~-------~~~~~l~ell~~aDiV~l 217 (331)
++++++.|.|. |-||+.+++.|...|.+|++..|+... . .. ....+++++++.+|+|+.
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih 87 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFH 87 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEE
Confidence 67899999996 999999999999999999988775431 0 01 011346677888998877
Q ss_pred ecc
Q 020073 218 CCA 220 (331)
Q Consensus 218 ~~P 220 (331)
+..
T Consensus 88 ~A~ 90 (342)
T PLN02214 88 TAS 90 (342)
T ss_pred ecC
Confidence 764
No 408
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.36 E-value=0.23 Score=47.64 Aligned_cols=58 Identities=16% Similarity=0.069 Sum_probs=42.6
Q ss_pred eEEEEec-ChHHHHHHHHHhhCC-------CEEEEECCCCCC---CC----cc-----------ccCCHHhhhcCCCEEE
Q 020073 163 RVGIVGL-GNIGLQVAKRLQAFG-------CNVLYNSRSKKP---VP----YA-----------FYSNVCELAANSDALI 216 (331)
Q Consensus 163 ~vgIiG~-G~IG~~~A~~l~~~G-------~~V~~~~~~~~~---~~----~~-----------~~~~l~ell~~aDiV~ 216 (331)
+|+|+|. |.+|+.++..|...+ .+|+.+|+.... .+ .. ...++.+.+++||+|+
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI 83 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI 83 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence 6999998 999999999997633 479888875421 00 00 1245678899999999
Q ss_pred Eecc
Q 020073 217 ICCA 220 (331)
Q Consensus 217 l~~P 220 (331)
.+.-
T Consensus 84 ~tAG 87 (325)
T cd01336 84 LVGA 87 (325)
T ss_pred EeCC
Confidence 8763
No 409
>PRK06523 short chain dehydrogenase; Provisional
Probab=93.35 E-value=0.15 Score=46.34 Aligned_cols=39 Identities=33% Similarity=0.484 Sum_probs=34.4
Q ss_pred ccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073 157 SKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK 195 (331)
Q Consensus 157 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~ 195 (331)
.+++|+++.|.| .|.||+++|+.|...|++|+..+|+..
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~ 44 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP 44 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence 358899999999 589999999999999999999888653
No 410
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=93.23 E-value=0.28 Score=47.00 Aligned_cols=59 Identities=20% Similarity=0.225 Sum_probs=43.1
Q ss_pred ceEEEEec-ChHHHHHHHHHhhCCC-------EEEEECCCCC--C-----------C-Cc----cccCCHHhhhcCCCEE
Q 020073 162 KRVGIVGL-GNIGLQVAKRLQAFGC-------NVLYNSRSKK--P-----------V-PY----AFYSNVCELAANSDAL 215 (331)
Q Consensus 162 ~~vgIiG~-G~IG~~~A~~l~~~G~-------~V~~~~~~~~--~-----------~-~~----~~~~~l~ell~~aDiV 215 (331)
.+|+|||. |.+|+.+|-.+...|. +++.+|.... . . .. ....+..+.+++||+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV 83 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA 83 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence 37999998 9999999999886664 7888888531 1 0 00 0113456899999999
Q ss_pred EEecc
Q 020073 216 IICCA 220 (331)
Q Consensus 216 ~l~~P 220 (331)
+++.-
T Consensus 84 VitAG 88 (323)
T TIGR01759 84 LLVGA 88 (323)
T ss_pred EEeCC
Confidence 99873
No 411
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=93.22 E-value=0.3 Score=47.25 Aligned_cols=81 Identities=20% Similarity=0.334 Sum_probs=50.6
Q ss_pred CceEEEEe-cChHHHHHHHHHhh-CCCE---EEEEC-C-CCCC-CCc----cccC--CHHhhhcCCCEEEEeccCChhhh
Q 020073 161 GKRVGIVG-LGNIGLQVAKRLQA-FGCN---VLYNS-R-SKKP-VPY----AFYS--NVCELAANSDALIICCALTDQTR 226 (331)
Q Consensus 161 g~~vgIiG-~G~IG~~~A~~l~~-~G~~---V~~~~-~-~~~~-~~~----~~~~--~l~ell~~aDiV~l~~P~t~~t~ 226 (331)
+.+||||| .|.+|+.+.+.|.. -.+. +..+. . +..+ ... .... +.+ .+.+.|++++++|.. .+.
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~-~~~~~Divf~a~~~~-~s~ 82 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKIN-SFEGVDIAFFSAGGE-VSR 82 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHH-HhcCCCEEEECCChH-HHH
Confidence 46899999 59999999999983 5665 43332 2 2222 111 1111 333 357899999999854 333
Q ss_pred hhccHHHHhcCCCCcEEEEcC
Q 020073 227 RMINREVMLALGKEGIIVNVG 247 (331)
Q Consensus 227 ~li~~~~l~~mk~ga~lIn~s 247 (331)
.+..+ . .+.|..+|+.|
T Consensus 83 ~~~~~-~---~~~G~~VID~S 99 (347)
T PRK06728 83 QFVNQ-A---VSSGAIVIDNT 99 (347)
T ss_pred HHHHH-H---HHCCCEEEECc
Confidence 33321 1 35789999988
No 412
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=93.19 E-value=0.22 Score=48.10 Aligned_cols=103 Identities=14% Similarity=0.107 Sum_probs=66.8
Q ss_pred ceEEEEecChHHHHHHHHHhhC--CCEEE-EECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCC-h-hhhhhc
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAF--GCNVL-YNSRSKKP-------VPYAFYSNVCELAANSDALIICCALT-D-QTRRMI 229 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~-~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t-~-~t~~li 229 (331)
.+|||||+ .+|+..++.++.. +++++ ++|+..++ .+...+.++++++.+.|++++++|.+ + .+..-+
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~ 82 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSAL 82 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHH
Confidence 58999999 6899999988765 47765 46776543 23345789999999999999999853 2 222222
Q ss_pred cHHHHhcCCCCc-EEEEcCCCCccCHHHHHHHHHhCCceEE
Q 020073 230 NREVMLALGKEG-IIVNVGRGAVIDENEMVRCLVRGEIAGA 269 (331)
Q Consensus 230 ~~~~l~~mk~ga-~lIn~srg~~vd~~al~~aL~~~~i~ga 269 (331)
-. +.++.|. +++.===. .-+.++|+++.++..+...
T Consensus 83 a~---~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 83 AR---ALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred HH---HHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCEEE
Confidence 22 2345553 44432212 3455668888887766533
No 413
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.19 E-value=0.37 Score=46.07 Aligned_cols=87 Identities=15% Similarity=0.223 Sum_probs=54.1
Q ss_pred CCceEEEEecChHHHHHHHHHhh-CC-CEEEEECCCCCCC----CccccCCHHhhhc--CCCEEEEeccCChhhhhhccH
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQA-FG-CNVLYNSRSKKPV----PYAFYSNVCELAA--NSDALIICCALTDQTRRMINR 231 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~-~G-~~V~~~~~~~~~~----~~~~~~~l~ell~--~aDiV~l~~P~t~~t~~li~~ 231 (331)
.|.+|.|+|.|.||..+++.++. +| .+|++.++++.+. ........+++.. ..|+|+-++... .+...+ .
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~G~~-~~~~~~-~ 240 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECVGGR-GSQSAI-N 240 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECCCCC-ccHHHH-H
Confidence 47899999999999999998885 54 5898888776541 1100011222222 368888776521 011122 3
Q ss_pred HHHhcCCCCcEEEEcCC
Q 020073 232 EVMLALGKEGIIVNVGR 248 (331)
Q Consensus 232 ~~l~~mk~ga~lIn~sr 248 (331)
..++.++++..++.++-
T Consensus 241 ~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 241 QIIDYIRPQGTIGLMGV 257 (341)
T ss_pred HHHHhCcCCcEEEEEee
Confidence 35677888888877663
No 414
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=93.18 E-value=0.28 Score=45.29 Aligned_cols=85 Identities=15% Similarity=0.194 Sum_probs=68.2
Q ss_pred HHHHHHHHhhCCCEEEEECCCCCC-----------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCc
Q 020073 173 GLQVAKRLQAFGCNVLYNSRSKKP-----------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEG 241 (331)
Q Consensus 173 G~~~A~~l~~~G~~V~~~~~~~~~-----------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga 241 (331)
|..+|-.+...|.+|+..+++.+- .++...++=.++.+.+.+.++.+|....|.++. ++.++.++.|+
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA 111 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA 111 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence 678888888889999999987653 233334555678999999999999999999865 88999999999
Q ss_pred EEEEcCCCCccCHHHHHHHH
Q 020073 242 IIVNVGRGAVIDENEMVRCL 261 (331)
Q Consensus 242 ~lIn~srg~~vd~~al~~aL 261 (331)
++.|+..-+. -.|+..|
T Consensus 112 VicnTCT~sp---~vLy~~L 128 (340)
T COG4007 112 VICNTCTVSP---VVLYYSL 128 (340)
T ss_pred EecccccCch---hHHHHHh
Confidence 9999986554 3566666
No 415
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=93.18 E-value=0.44 Score=48.55 Aligned_cols=89 Identities=12% Similarity=0.052 Sum_probs=63.3
Q ss_pred cCCCceEEEEec---ChHHHHHHHHHhhCC-CEEEEECCCCCC-C----------C--ccccCCHHhhhcCCCEE--EE-
Q 020073 158 KLGGKRVGIVGL---GNIGLQVAKRLQAFG-CNVLYNSRSKKP-V----------P--YAFYSNVCELAANSDAL--II- 217 (331)
Q Consensus 158 ~l~g~~vgIiG~---G~IG~~~A~~l~~~G-~~V~~~~~~~~~-~----------~--~~~~~~l~ell~~aDiV--~l- 217 (331)
.+.|.+|++||= |++..+++..+..|| ++|.+..+..-. . + .....+++++++++|+. ..
T Consensus 171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw~~ 250 (525)
T PRK13376 171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIWYF 250 (525)
T ss_pred CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceEEE
Confidence 477999999997 699999999999998 999887764321 0 1 22357899999999952 22
Q ss_pred ------eccCC-----hh--hhhhccHHHHhcCCCCcEEEEc
Q 020073 218 ------CCALT-----DQ--TRRMINREVMLALGKEGIIVNV 246 (331)
Q Consensus 218 ------~~P~t-----~~--t~~li~~~~l~~mk~ga~lIn~ 246 (331)
..+.. .+ -...++++.++.+|+++++.-+
T Consensus 251 ~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHc 292 (525)
T PRK13376 251 TRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHP 292 (525)
T ss_pred eccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECC
Confidence 12111 11 1234689999999999888765
No 416
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=93.18 E-value=0.24 Score=44.85 Aligned_cols=38 Identities=32% Similarity=0.517 Sum_probs=33.8
Q ss_pred cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073 158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK 195 (331)
Q Consensus 158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~ 195 (331)
++.||++.|.| .|.||+.+|+.|...|++|++.+|+..
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~ 45 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPA 45 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 47899999999 599999999999999999999888643
No 417
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.11 E-value=0.32 Score=47.02 Aligned_cols=82 Identities=26% Similarity=0.329 Sum_probs=54.7
Q ss_pred eEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-----C--Cccc-c---C-C----HHhhh--cCCCEEEEeccCCh
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-----V--PYAF-Y---S-N----VCELA--ANSDALIICCALTD 223 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-----~--~~~~-~---~-~----l~ell--~~aDiV~l~~P~t~ 223 (331)
++.|+|.|.||...++.++.+|. +|++.|+++.+ . +... . . + ..++. ..+|+++-|.. ++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-~~ 249 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-SP 249 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-CH
Confidence 99999999999999999999997 67788887654 1 1111 1 1 1 11233 24899998876 22
Q ss_pred hhhhhccHHHHhcCCCCcEEEEcCCC
Q 020073 224 QTRRMINREVMLALGKEGIIVNVGRG 249 (331)
Q Consensus 224 ~t~~li~~~~l~~mk~ga~lIn~srg 249 (331)
. .+ ...++..+++..++.++=.
T Consensus 250 ~---~~-~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 250 P---AL-DQALEALRPGGTVVVVGVY 271 (350)
T ss_pred H---HH-HHHHHHhcCCCEEEEEecc
Confidence 2 11 3456667888877777643
No 418
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=93.11 E-value=0.29 Score=45.93 Aligned_cols=61 Identities=18% Similarity=0.149 Sum_probs=44.6
Q ss_pred CCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCC----------C----c-------cccCCHHhhhcCCCEEEE
Q 020073 160 GGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPV----------P----Y-------AFYSNVCELAANSDALII 217 (331)
Q Consensus 160 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------~----~-------~~~~~l~ell~~aDiV~l 217 (331)
+|++|.|.| .|-||+.+++.|...|.+|++..|..... . . ....+++++++.+|+|+.
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 368999999 69999999999999999998776653210 0 0 011346677888998877
Q ss_pred ecc
Q 020073 218 CCA 220 (331)
Q Consensus 218 ~~P 220 (331)
+..
T Consensus 83 ~A~ 85 (322)
T PLN02662 83 TAS 85 (322)
T ss_pred eCC
Confidence 663
No 419
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=93.10 E-value=0.19 Score=45.75 Aligned_cols=64 Identities=23% Similarity=0.321 Sum_probs=45.9
Q ss_pred cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC----C----Cccc--------cCCHHhhh-cCCCEEEEec
Q 020073 158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP----V----PYAF--------YSNVCELA-ANSDALIICC 219 (331)
Q Consensus 158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~----~----~~~~--------~~~l~ell-~~aDiV~l~~ 219 (331)
...++++.|+| .|.||+.+++.|...|++|++..|+... . .... ..++.+.+ ...|+|+.+.
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~ 93 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICAT 93 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECC
Confidence 46789999999 5999999999999999999887765432 0 1110 11244555 5799999876
Q ss_pred cC
Q 020073 220 AL 221 (331)
Q Consensus 220 P~ 221 (331)
+.
T Consensus 94 g~ 95 (251)
T PLN00141 94 GF 95 (251)
T ss_pred CC
Confidence 54
No 420
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=93.08 E-value=0.96 Score=46.19 Aligned_cols=137 Identities=15% Similarity=0.144 Sum_probs=98.2
Q ss_pred ccCCCceEEEEecCh-HHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073 157 SKLGGKRVGIVGLGN-IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVML 235 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~ 235 (331)
..+.|++..++|-.. +|..++..|+.....|..+-.. ..++.|.+.++|+|+.++-- .+++..+.
T Consensus 158 v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSK--------T~~lae~v~~ADIvIvAiG~----PefVKgdW-- 223 (935)
T KOG4230|consen 158 VFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSK--------TRNLAEKVSRADIVIVAIGQ----PEFVKGDW-- 223 (935)
T ss_pred CccccceeEEEecccccCChHHHHHHhcCceEEEecCC--------CccHHHHhccCCEEEEEcCC----cceeeccc--
Confidence 458899999999655 5899999999989999876431 35899999999999999842 24565555
Q ss_pred cCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHH
Q 020073 236 ALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNL 315 (331)
Q Consensus 236 ~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl 315 (331)
+|||+++|+++---+-|..- ++|.- ..-||-..+-.. . --.+||=-||.-.-+..-+.+.+++..
T Consensus 224 -iKpGavVIDvGINyvpD~~K-----ksg~k--lvGDVdfe~Ake---v----as~ITPVPGGVGPMTVAMLmqNtveaA 288 (935)
T KOG4230|consen 224 -IKPGAVVIDVGINYVPDPSK-----KSGFK--LVGDVDFESAKE---V----ASFITPVPGGVGPMTVAMLMQNTVEAA 288 (935)
T ss_pred -ccCCcEEEEccccccCCCCC-----cccce--EeeecchHhhhh---h----hhccccCCCCcchHHHHHHHHHHHHHH
Confidence 69999999998655544321 22322 456775544321 1 126899999988877777777788888
Q ss_pred HHHHcCC
Q 020073 316 EALFSNQ 322 (331)
Q Consensus 316 ~~~~~g~ 322 (331)
.+++.+.
T Consensus 289 KR~r~es 295 (935)
T KOG4230|consen 289 KRQREES 295 (935)
T ss_pred HHHHHhc
Confidence 8777653
No 421
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=93.05 E-value=0.26 Score=46.85 Aligned_cols=84 Identities=21% Similarity=0.256 Sum_probs=55.8
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCC-HHhhhcCCCEEEEeccCChhhhhhccHH
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSN-VCELAANSDALIICCALTDQTRRMINRE 232 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~-l~ell~~aDiV~l~~P~t~~t~~li~~~ 232 (331)
.|.+|.|.|.|.+|...++.++.+|.+|++.+++.++ .+....-+ .++.-...|+++.+.... . .+ ..
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~~-~~ 239 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---LV-PP 239 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---HH-HH
Confidence 4789999999999999999999999999888876544 22211101 111112467776665432 1 22 44
Q ss_pred HHhcCCCCcEEEEcCC
Q 020073 233 VMLALGKEGIIVNVGR 248 (331)
Q Consensus 233 ~l~~mk~ga~lIn~sr 248 (331)
.++.++++..++.++-
T Consensus 240 ~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 240 ALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHhhCCCcEEEEEec
Confidence 6677899988888764
No 422
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=93.02 E-value=0.25 Score=47.37 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=47.1
Q ss_pred CccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCC-----------Ccc-------ccCCHHhhhcCCCEEE
Q 020073 156 GSKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPV-----------PYA-------FYSNVCELAANSDALI 216 (331)
Q Consensus 156 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----------~~~-------~~~~l~ell~~aDiV~ 216 (331)
+++.++++|.|.| .|-||+.+++.|...|.+|++.++..... ... ....+.+++++.|+|+
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 84 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVF 84 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence 5678899999999 69999999999999999999877654210 000 1123556777889777
Q ss_pred Eecc
Q 020073 217 ICCA 220 (331)
Q Consensus 217 l~~P 220 (331)
-+..
T Consensus 85 h~A~ 88 (353)
T PLN02896 85 HVAA 88 (353)
T ss_pred ECCc
Confidence 6653
No 423
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=92.96 E-value=0.28 Score=47.25 Aligned_cols=84 Identities=27% Similarity=0.326 Sum_probs=55.0
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCcc---ccC---CHHhhhcCCCEEEEeccCChhhh
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYA---FYS---NVCELAANSDALIICCALTDQTR 226 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~---~~~---~l~ell~~aDiV~l~~P~t~~t~ 226 (331)
.|.++.|.|.|.+|..+++.++..|.+|++..++.++ .+.. ... .+.+.....|+++-+++....
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~-- 257 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHP-- 257 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHH--
Confidence 5788999999999999999999999998877655422 1111 011 122333456888877653221
Q ss_pred hhccHHHHhcCCCCcEEEEcCC
Q 020073 227 RMINREVMLALGKEGIIVNVGR 248 (331)
Q Consensus 227 ~li~~~~l~~mk~ga~lIn~sr 248 (331)
+ ...++.++++..++.++.
T Consensus 258 --~-~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 258 --L-EPYLSLLKLDGKLILMGV 276 (357)
T ss_pred --H-HHHHHHhccCCEEEEECC
Confidence 1 234566788888888764
No 424
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=92.96 E-value=0.74 Score=45.57 Aligned_cols=102 Identities=15% Similarity=0.150 Sum_probs=68.6
Q ss_pred eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-C-----------Ccccc--CCHHhhhcCCCEEEEec--cC-Chhh
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-V-----------PYAFY--SNVCELAANSDALIICC--AL-TDQT 225 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-~-----------~~~~~--~~l~ell~~aDiV~l~~--P~-t~~t 225 (331)
++.|||+|.+|.++|+.|+..|++|.++|..... . +.... .+ .+.+.++|+|+..- |. +++.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence 4789999999999999999999999999975432 1 11111 12 34567899887754 22 2221
Q ss_pred h-------hhccHH-HH-hcCCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 020073 226 R-------RMINRE-VM-LALGKEGIIVNVGRGAVIDENEMVRCLVRGE 265 (331)
Q Consensus 226 ~-------~li~~~-~l-~~mk~ga~lIn~srg~~vd~~al~~aL~~~~ 265 (331)
. .++++. .+ ..++...+-|.-+.|+.-...-+...|+...
T Consensus 80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 128 (433)
T TIGR01087 80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG 128 (433)
T ss_pred HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 1 133333 22 2234457888889999999998888888754
No 425
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.94 E-value=0.28 Score=46.99 Aligned_cols=94 Identities=17% Similarity=0.169 Sum_probs=58.9
Q ss_pred eEEEEec-ChHHHHHHHHHhhCCC-------EEEEECCCC--CC-C-------Cc--------cccCCHHhhhcCCCEEE
Q 020073 163 RVGIVGL-GNIGLQVAKRLQAFGC-------NVLYNSRSK--KP-V-------PY--------AFYSNVCELAANSDALI 216 (331)
Q Consensus 163 ~vgIiG~-G~IG~~~A~~l~~~G~-------~V~~~~~~~--~~-~-------~~--------~~~~~l~ell~~aDiV~ 216 (331)
+|+|+|. |.||+.+|..|...|. +++.+|+.. +. . .. ....+..+.+++||+|+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 7999999 9999999999876443 488888875 32 0 00 00135678999999999
Q ss_pred Eecc--CCh-hhh--------hhcc--HHHHhcC-CCCcEEEEcCCCCccCHHHHH
Q 020073 217 ICCA--LTD-QTR--------RMIN--REVMLAL-GKEGIIVNVGRGAVIDENEMV 258 (331)
Q Consensus 217 l~~P--~t~-~t~--------~li~--~~~l~~m-k~ga~lIn~srg~~vd~~al~ 258 (331)
++.- ..+ +|+ .++. ...+... +|.+++|.++ ..+|--+.+
T Consensus 82 itAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~ 135 (323)
T cd00704 82 LVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALI 135 (323)
T ss_pred EeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHH
Confidence 8763 222 121 1110 1123334 5788888875 555554433
No 426
>PRK08628 short chain dehydrogenase; Provisional
Probab=92.90 E-value=0.34 Score=43.88 Aligned_cols=38 Identities=29% Similarity=0.316 Sum_probs=33.6
Q ss_pred cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073 158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK 195 (331)
Q Consensus 158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~ 195 (331)
++.|+++.|.| .|.||+.+|+.|...|++|++.+++..
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~ 42 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAP 42 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChh
Confidence 58899999999 689999999999999999988887653
No 427
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=92.88 E-value=0.22 Score=48.84 Aligned_cols=39 Identities=33% Similarity=0.374 Sum_probs=34.1
Q ss_pred CccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCC
Q 020073 156 GSKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSK 194 (331)
Q Consensus 156 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~ 194 (331)
++...++++.|+| .|.||+.+++.|...|.+|++.+|+.
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 4557788999999 59999999999999999999888765
No 428
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=92.88 E-value=0.3 Score=47.55 Aligned_cols=34 Identities=47% Similarity=0.663 Sum_probs=30.8
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCCEEEEECCC
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRS 193 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~ 193 (331)
.|.+|.|.|.|.+|..+++.++.+|.+|++.+++
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~ 211 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRS 211 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCC
Confidence 4789999999999999999999999998887654
No 429
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=92.88 E-value=0.36 Score=45.78 Aligned_cols=84 Identities=29% Similarity=0.331 Sum_probs=51.9
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc---ccC--C-HHhhhcCCCEEEEeccCChhhhh
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA---FYS--N-VCELAANSDALIICCALTDQTRR 227 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~---~~~--~-l~ell~~aDiV~l~~P~t~~t~~ 227 (331)
.|.++.|.|.|.+|+.+++.++.+|.+|++.+++... .+.. ... + ..+.-...|+|+-+.+...
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~---- 244 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASH---- 244 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcc----
Confidence 4678999999999999999999999999888776533 1110 000 0 1112244666666655321
Q ss_pred hccHHHHhcCCCCcEEEEcCC
Q 020073 228 MINREVMLALGKEGIIVNVGR 248 (331)
Q Consensus 228 li~~~~l~~mk~ga~lIn~sr 248 (331)
.-...++.+++++.+++++.
T Consensus 245 -~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 245 -DLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred -hHHHHHHHhcCCCEEEEEec
Confidence 11334555666666666653
No 430
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=92.86 E-value=0.25 Score=47.40 Aligned_cols=29 Identities=38% Similarity=0.531 Sum_probs=23.5
Q ss_pred eEEEEecChHHHHHHHHHhhCC----CEEEEEC
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFG----CNVLYNS 191 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G----~~V~~~~ 191 (331)
+|||+|+|+||+.+.+.+...+ ++|...+
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaIn 33 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALN 33 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 5899999999999999987643 6776543
No 431
>PRK08374 homoserine dehydrogenase; Provisional
Probab=92.78 E-value=0.46 Score=45.77 Aligned_cols=113 Identities=19% Similarity=0.245 Sum_probs=63.7
Q ss_pred ceEEEEecChHHHHHHHHHhh--------CC--CEEEEE-CCCCC---CCCc---------------cc--------cCC
Q 020073 162 KRVGIVGLGNIGLQVAKRLQA--------FG--CNVLYN-SRSKK---PVPY---------------AF--------YSN 204 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~--------~G--~~V~~~-~~~~~---~~~~---------------~~--------~~~ 204 (331)
-+|+|+|+|.+|+.+++.+.. +| .+|.+. +++.. +.+. .. ..+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 479999999999999998865 56 455543 43211 0000 00 115
Q ss_pred HHhhh--cCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCcc-CHHHHHHHHHhCCce-EEEeecCCCCCC
Q 020073 205 VCELA--ANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVI-DENEMVRCLVRGEIA-GAGLDVFENEPY 279 (331)
Q Consensus 205 l~ell--~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~v-d~~al~~aL~~~~i~-ga~lDV~~~EP~ 279 (331)
+++++ ..+|+|+-+.+.. ....++ ...++.|.-+|-..-|.+- ..++|.+.-+++... .+.--|...-|.
T Consensus 83 ~~ell~~~~~DVvVd~t~~~-~a~~~~----~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiPi 156 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDK-NAHEWH----LEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTPI 156 (336)
T ss_pred HHHHHhcCCCCEEEECCCcH-HHHHHH----HHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCCc
Confidence 67777 4799999887432 222222 2335667666665555432 555666655554322 233445555564
No 432
>PRK08324 short chain dehydrogenase; Validated
Probab=92.76 E-value=0.21 Score=52.70 Aligned_cols=39 Identities=36% Similarity=0.474 Sum_probs=34.9
Q ss_pred ccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073 157 SKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK 195 (331)
Q Consensus 157 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~ 195 (331)
..+.|+++.|.| .|.||+.+|+.|...|++|++.+++..
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~ 457 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE 457 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence 457899999999 699999999999999999999988754
No 433
>PRK05442 malate dehydrogenase; Provisional
Probab=92.70 E-value=0.33 Score=46.60 Aligned_cols=93 Identities=16% Similarity=0.226 Sum_probs=56.7
Q ss_pred ceEEEEec-ChHHHHHHHHHhhCCC-------EEEEECCCCCC-------C-------Cc----cccCCHHhhhcCCCEE
Q 020073 162 KRVGIVGL-GNIGLQVAKRLQAFGC-------NVLYNSRSKKP-------V-------PY----AFYSNVCELAANSDAL 215 (331)
Q Consensus 162 ~~vgIiG~-G~IG~~~A~~l~~~G~-------~V~~~~~~~~~-------~-------~~----~~~~~l~ell~~aDiV 215 (331)
.+|+|||. |.+|..+|-.+...|. ++..+|..... . .. ....+..+.+++||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999998765333 68888874321 0 00 1123456899999999
Q ss_pred EEeccC--Ch-hhhh-hc--cHH-------HHhc-CCCCcEEEEcCCCCccCHHH
Q 020073 216 IICCAL--TD-QTRR-MI--NRE-------VMLA-LGKEGIIVNVGRGAVIDENE 256 (331)
Q Consensus 216 ~l~~P~--t~-~t~~-li--~~~-------~l~~-mk~ga~lIn~srg~~vd~~a 256 (331)
+++.-. .+ +|+- ++ |.+ .+.. -++.+++|.++ ..+|--.
T Consensus 85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t 137 (326)
T PRK05442 85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNA 137 (326)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHH
Confidence 998732 21 1221 11 222 1222 23688999887 4454444
No 434
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=92.70 E-value=0.25 Score=47.98 Aligned_cols=60 Identities=22% Similarity=0.267 Sum_probs=43.4
Q ss_pred CCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC--C----Ccc-------ccCCHHhhhcCCCEEEEec
Q 020073 160 GGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP--V----PYA-------FYSNVCELAANSDALIICC 219 (331)
Q Consensus 160 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~--~----~~~-------~~~~l~ell~~aDiV~l~~ 219 (331)
.+++|.|.|. |-||+.+++.|...|.+|++.+|.... . ... ...++..++.++|+|+-+.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 93 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA 93 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence 4689999996 999999999999999999998875321 0 011 0122445667899888665
No 435
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=92.63 E-value=0.28 Score=47.30 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=49.4
Q ss_pred eEEEEe-cChHHHHHHHHHhhCCCE---EEEECCCCCC---C---Cc-cccCCH-HhhhcCCCEEEEeccCChhhhhhcc
Q 020073 163 RVGIVG-LGNIGLQVAKRLQAFGCN---VLYNSRSKKP---V---PY-AFYSNV-CELAANSDALIICCALTDQTRRMIN 230 (331)
Q Consensus 163 ~vgIiG-~G~IG~~~A~~l~~~G~~---V~~~~~~~~~---~---~~-~~~~~l-~ell~~aDiV~l~~P~t~~t~~li~ 230 (331)
+|+||| .|.+|+++++.|...|+. +.++.+.... . +. ....++ .+.+.++|+|+.|+|.. .+..+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~-~s~~~a- 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGS-VSKEFA- 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHH-HHHHHH-
Confidence 589999 899999999999886664 3333333221 1 11 011122 23458899999999855 333332
Q ss_pred HHHHhcCCCCcEEEEcC
Q 020073 231 REVMLALGKEGIIVNVG 247 (331)
Q Consensus 231 ~~~l~~mk~ga~lIn~s 247 (331)
... .+.|.++|+.|
T Consensus 79 ~~~---~~~G~~VID~s 92 (339)
T TIGR01296 79 PKA---AKCGAIVIDNT 92 (339)
T ss_pred HHH---HHCCCEEEECC
Confidence 222 35688889887
No 436
>PRK07856 short chain dehydrogenase; Provisional
Probab=92.63 E-value=0.19 Score=45.56 Aligned_cols=37 Identities=30% Similarity=0.437 Sum_probs=33.0
Q ss_pred cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCC
Q 020073 158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSK 194 (331)
Q Consensus 158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~ 194 (331)
++.||++.|.| .|.||+++|+.|...|++|+..+|+.
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~ 40 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA 40 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence 46799999999 58999999999999999999888865
No 437
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=92.61 E-value=0.26 Score=46.69 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=32.0
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCCE-EEEECCCCC
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGCN-VLYNSRSKK 195 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~~ 195 (331)
.|.+|.|+|.|.+|..+++.++.+|.+ |++.+++..
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~ 199 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPE 199 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 388999999999999999999999998 888877643
No 438
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=92.57 E-value=0.42 Score=44.90 Aligned_cols=84 Identities=21% Similarity=0.292 Sum_probs=55.6
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc---ccC--CH-HhhhcCCCEEEEeccCChhhhh
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA---FYS--NV-CELAANSDALIICCALTDQTRR 227 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~---~~~--~l-~ell~~aDiV~l~~P~t~~t~~ 227 (331)
.|.++.|+|.|.+|+.+++.++.+|.+|++.+++... .+.. ... +. .......|+++-++....
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~---- 237 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA---- 237 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH----
Confidence 4678999999999999999999999999988776543 1110 000 11 111235788887654221
Q ss_pred hccHHHHhcCCCCcEEEEcCC
Q 020073 228 MINREVMLALGKEGIIVNVGR 248 (331)
Q Consensus 228 li~~~~l~~mk~ga~lIn~sr 248 (331)
.....+..|+++..+|+++.
T Consensus 238 -~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 238 -AAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -HHHHHHHhcccCCEEEEECC
Confidence 12445677888888888763
No 439
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=92.57 E-value=0.22 Score=46.57 Aligned_cols=59 Identities=22% Similarity=0.169 Sum_probs=44.2
Q ss_pred ceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCC------Ccc-------ccCCHHhhhcCCCEEEEecc
Q 020073 162 KRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPV------PYA-------FYSNVCELAANSDALIICCA 220 (331)
Q Consensus 162 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~-------~~~~l~ell~~aDiV~l~~P 220 (331)
+++.|.| .|.||+.+++.|...|.+|++.+|+.... ... ...++.++++.+|+|+.+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 3688998 59999999999999999999988865430 111 11346677888998887764
No 440
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=92.56 E-value=0.34 Score=46.11 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=43.8
Q ss_pred ceEEEEecChHHHHHHHHHhh--CCCEEEEECCCCCC-CC-------------c--cccC-CHHhhhcCCCEEEEec--c
Q 020073 162 KRVGIVGLGNIGLQVAKRLQA--FGCNVLYNSRSKKP-VP-------------Y--AFYS-NVCELAANSDALIICC--A 220 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~--~G~~V~~~~~~~~~-~~-------------~--~~~~-~l~ell~~aDiV~l~~--P 220 (331)
++|+|||.|.||+++|-.|.. ++-++..+|...+. .+ . .... .=.+.++.||+|+++. |
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~p 80 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP 80 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCC
Confidence 479999999999999999854 44478889887433 00 0 0011 1147899999999998 5
Q ss_pred CCh
Q 020073 221 LTD 223 (331)
Q Consensus 221 ~t~ 223 (331)
..|
T Consensus 81 rKp 83 (313)
T COG0039 81 RKP 83 (313)
T ss_pred CCC
Confidence 554
No 441
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=92.53 E-value=0.21 Score=51.28 Aligned_cols=62 Identities=18% Similarity=0.257 Sum_probs=46.2
Q ss_pred CCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCC---------------C------cc-------ccCCHHhhh
Q 020073 159 LGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPV---------------P------YA-------FYSNVCELA 209 (331)
Q Consensus 159 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~---------------~------~~-------~~~~l~ell 209 (331)
-.|+++.|.|. |.||+.+++.|...|++|++..|+.... + .. ...++.+++
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 46789999995 9999999999999999999888764320 0 00 112355678
Q ss_pred cCCCEEEEecc
Q 020073 210 ANSDALIICCA 220 (331)
Q Consensus 210 ~~aDiV~l~~P 220 (331)
..+|+|+.++.
T Consensus 158 ggiDiVVn~AG 168 (576)
T PLN03209 158 GNASVVICCIG 168 (576)
T ss_pred cCCCEEEEccc
Confidence 89999998864
No 442
>PRK06196 oxidoreductase; Provisional
Probab=92.50 E-value=0.37 Score=45.45 Aligned_cols=38 Identities=26% Similarity=0.469 Sum_probs=33.7
Q ss_pred cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073 158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKK 195 (331)
Q Consensus 158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~ 195 (331)
.+.|+++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~ 61 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD 61 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 478899999995 89999999999999999999888653
No 443
>PRK15076 alpha-galactosidase; Provisional
Probab=92.48 E-value=0.13 Score=51.18 Aligned_cols=60 Identities=10% Similarity=0.145 Sum_probs=42.0
Q ss_pred ceEEEEecChHHHHHHH--HH---hhC-CCEEEEECCCCCC--------------CC----ccccCCHHhhhcCCCEEEE
Q 020073 162 KRVGIVGLGNIGLQVAK--RL---QAF-GCNVLYNSRSKKP--------------VP----YAFYSNVCELAANSDALII 217 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~--~l---~~~-G~~V~~~~~~~~~--------------~~----~~~~~~l~ell~~aDiV~l 217 (331)
.+|+|||.|++|...+- .+ .++ |.+|+.+|...+. .+ .....++.+++++||+|+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 47999999999955443 22 233 4589999987543 01 1124577899999999999
Q ss_pred eccC
Q 020073 218 CCAL 221 (331)
Q Consensus 218 ~~P~ 221 (331)
+.-.
T Consensus 82 ti~v 85 (431)
T PRK15076 82 AIQV 85 (431)
T ss_pred eeee
Confidence 9854
No 444
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=92.47 E-value=0.31 Score=46.72 Aligned_cols=58 Identities=17% Similarity=0.108 Sum_probs=41.5
Q ss_pred eEEEEec-ChHHHHHHHHHhhCCC-------EEEEECCCCCC-------C---Ccc--------ccCCHHhhhcCCCEEE
Q 020073 163 RVGIVGL-GNIGLQVAKRLQAFGC-------NVLYNSRSKKP-------V---PYA--------FYSNVCELAANSDALI 216 (331)
Q Consensus 163 ~vgIiG~-G~IG~~~A~~l~~~G~-------~V~~~~~~~~~-------~---~~~--------~~~~l~ell~~aDiV~ 216 (331)
+|+|||. |.+|..+|..+...|. +++.+|+.+.. . ... ...+..+.+++||+|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 5899999 9999999999876444 48888874331 0 000 0124568999999999
Q ss_pred Eecc
Q 020073 217 ICCA 220 (331)
Q Consensus 217 l~~P 220 (331)
++.-
T Consensus 81 itAG 84 (324)
T TIGR01758 81 LVGA 84 (324)
T ss_pred EcCC
Confidence 8773
No 445
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=92.44 E-value=0.21 Score=41.61 Aligned_cols=31 Identities=32% Similarity=0.483 Sum_probs=27.9
Q ss_pred eEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS 193 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~ 193 (331)
+|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 58999999999999999999998 68888765
No 446
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=92.44 E-value=1.7 Score=41.87 Aligned_cols=61 Identities=10% Similarity=0.006 Sum_probs=45.6
Q ss_pred C-CCceEEEEecC-------hHHHHHHHHHhhCCCEEEEECC-CCCC-----C----------C--ccccCCHHhhhcCC
Q 020073 159 L-GGKRVGIVGLG-------NIGLQVAKRLQAFGCNVLYNSR-SKKP-----V----------P--YAFYSNVCELAANS 212 (331)
Q Consensus 159 l-~g~~vgIiG~G-------~IG~~~A~~l~~~G~~V~~~~~-~~~~-----~----------~--~~~~~~l~ell~~a 212 (331)
+ .|++|+|+|.| ++.++++..+..+|++|.+..+ ..-. . + .....+++++++++
T Consensus 166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~a 245 (335)
T PRK04523 166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGA 245 (335)
T ss_pred ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 5 68999877643 7888999999999999998887 3211 0 1 12347899999999
Q ss_pred CEEEEec
Q 020073 213 DALIICC 219 (331)
Q Consensus 213 DiV~l~~ 219 (331)
|+|..-.
T Consensus 246 Dvvy~~~ 252 (335)
T PRK04523 246 DVVYAKS 252 (335)
T ss_pred CEEEece
Confidence 9998743
No 447
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=92.44 E-value=0.29 Score=47.33 Aligned_cols=84 Identities=21% Similarity=0.253 Sum_probs=52.7
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC------CCcc---cc--CCH----Hhhhc-CCCEEEEeccCC
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP------VPYA---FY--SNV----CELAA-NSDALIICCALT 222 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~------~~~~---~~--~~l----~ell~-~aDiV~l~~P~t 222 (331)
.|.+|.|.|.|.+|..+++.++..|+ +|++.++++.+ .+.. .. .++ .++.. ..|+|+-++...
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~ 270 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV 270 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence 47899999999999999999999999 68888776543 1111 00 111 11111 367777765322
Q ss_pred hhhhhhccHHHHhcCCCCcEEEEcCC
Q 020073 223 DQTRRMINREVMLALGKEGIIVNVGR 248 (331)
Q Consensus 223 ~~t~~li~~~~l~~mk~ga~lIn~sr 248 (331)
.. + ...++.++++..++.++-
T Consensus 271 ~~----~-~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 271 PA----L-ETAYEITRRGGTTVTAGL 291 (371)
T ss_pred HH----H-HHHHHHHhcCCEEEEEcc
Confidence 11 1 223556777777777653
No 448
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=92.42 E-value=0.33 Score=46.62 Aligned_cols=36 Identities=17% Similarity=0.352 Sum_probs=31.6
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCCE-EEEECCCCC
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGCN-VLYNSRSKK 195 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~~ 195 (331)
.|++|.|.|.|.+|+.+++.++.+|.+ |++.+++..
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~ 212 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDR 212 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence 478999999999999999999999995 888877654
No 449
>PRK13529 malate dehydrogenase; Provisional
Probab=92.40 E-value=2.5 Score=43.32 Aligned_cols=187 Identities=16% Similarity=0.170 Sum_probs=117.1
Q ss_pred CCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhh--
Q 020073 105 RGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQA-- 182 (331)
Q Consensus 105 ~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~-- 182 (331)
..|.+.|..= .-+|-.+++.+|+.+|- .|+.|...++.|+|.|.-|-.+|+.+..
T Consensus 262 ~~i~~FnDDi---QGTaaV~LAgll~A~r~--------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~~ 318 (563)
T PRK13529 262 DEICTFNDDI---QGTGAVTLAGLLAALKI--------------------TGEPLSDQRIVFLGAGSAGCGIADQIVAAM 318 (563)
T ss_pred cCCCeecccc---chHHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECCCHHHHHHHHHHHHHH
Confidence 3566666532 23566677777776663 2456889999999999999999999875
Q ss_pred --CCC-------EEEEECCCCC------CC---------Ccc---------ccCCHHhhhcCC--CEEEEeccCChhhhh
Q 020073 183 --FGC-------NVLYNSRSKK------PV---------PYA---------FYSNVCELAANS--DALIICCALTDQTRR 227 (331)
Q Consensus 183 --~G~-------~V~~~~~~~~------~~---------~~~---------~~~~l~ell~~a--DiV~l~~P~t~~t~~ 227 (331)
.|. +++.+|+..- .. ... ...+|.|+++.+ |+++-+- ..-+
T Consensus 319 ~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S----~~~g 394 (563)
T PRK13529 319 VREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVS----GQPG 394 (563)
T ss_pred HHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEec----CCCC
Confidence 577 7888886521 00 000 114789999888 9888642 2347
Q ss_pred hccHHHHhcCCC---CcEEEEcCCCCccCHHHHHHHHH--hCC-ceEEEeecCCCCCCCCC----ccccCCceEEcCCCC
Q 020073 228 MINREVMLALGK---EGIIVNVGRGAVIDENEMVRCLV--RGE-IAGAGLDVFENEPYVPK----ELLELDNVVLQPHRA 297 (331)
Q Consensus 228 li~~~~l~~mk~---ga~lIn~srg~~vd~~al~~aL~--~~~-i~ga~lDV~~~EP~~~~----~L~~~~nvilTPH~a 297 (331)
.++++.++.|.+ ..++.=.|...--.|-.-.+|.+ +|+ |.+.|.- | .|..-+ ..=...|+++-|=++
T Consensus 395 ~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGsp-f--~pv~~~G~~~~p~Q~NN~~iFPGig 471 (563)
T PRK13529 395 AFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSP-F--APVEYNGKTYPIGQCNNAYIFPGLG 471 (563)
T ss_pred CCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCC-C--CCeeeCCeEeccCcCcceeecccch
Confidence 899999999976 78999888877644444444444 354 5433331 1 111001 112345888888776
Q ss_pred CCcH-----HHHHHHHHHHHHHHHHHHcC
Q 020073 298 VFTS-----ECFVDLCELAVGNLEALFSN 321 (331)
Q Consensus 298 ~~t~-----~~~~~~~~~~~~nl~~~~~g 321 (331)
-... .--+.|...+++-|.++..-
T Consensus 472 lGa~~~~a~~Itd~m~~aAA~alA~~v~~ 500 (563)
T PRK13529 472 LGVIASGARRVTDGMLMAAAHALADCVPL 500 (563)
T ss_pred hhhhhcCCcCCCHHHHHHHHHHHHhhCcc
Confidence 4322 22356666666666665543
No 450
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=92.40 E-value=0.3 Score=46.87 Aligned_cols=36 Identities=28% Similarity=0.227 Sum_probs=32.1
Q ss_pred CCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCC
Q 020073 159 LGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSK 194 (331)
Q Consensus 159 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~ 194 (331)
+++++|.|.| .|-||+.+++.|...|.+|+++++..
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~ 49 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS 49 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 6779999999 59999999999999999999998743
No 451
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.37 E-value=0.22 Score=49.61 Aligned_cols=107 Identities=17% Similarity=0.269 Sum_probs=70.7
Q ss_pred CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----C-----Ccccc-CC-HHhhhcCCCEEEEeccC---Ch
Q 020073 159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----V-----PYAFY-SN-VCELAANSDALIICCAL---TD 223 (331)
Q Consensus 159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~-----~~~~~-~~-l~ell~~aDiV~l~~P~---t~ 223 (331)
+.++++.|+|.|.+|.++|+.|...|++|.++|..... . +.... .. -+..+.++|+|+..--. .+
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p 82 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP 82 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence 56899999999999999999999999999999875432 0 11111 11 22345679988876422 22
Q ss_pred hhhh-------hcc-HHHHhc-CC---CCcEEEEcCCCCccCHHHHHHHHHhCC
Q 020073 224 QTRR-------MIN-REVMLA-LG---KEGIIVNVGRGAVIDENEMVRCLVRGE 265 (331)
Q Consensus 224 ~t~~-------li~-~~~l~~-mk---~ga~lIn~srg~~vd~~al~~aL~~~~ 265 (331)
.... +++ .+.+.. ++ ...+-|--+-|+.-...-+...|+...
T Consensus 83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g 136 (445)
T PRK04308 83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCG 136 (445)
T ss_pred HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 2211 222 223333 22 246788888999988888888887644
No 452
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=92.33 E-value=0.51 Score=45.65 Aligned_cols=81 Identities=12% Similarity=0.119 Sum_probs=49.6
Q ss_pred ceEEEEe-cChHHHHHHHHHhhCC-CEEEEECCCCCC----CC----cc------------cc--CCHHhhhcCCCEEEE
Q 020073 162 KRVGIVG-LGNIGLQVAKRLQAFG-CNVLYNSRSKKP----VP----YA------------FY--SNVCELAANSDALII 217 (331)
Q Consensus 162 ~~vgIiG-~G~IG~~~A~~l~~~G-~~V~~~~~~~~~----~~----~~------------~~--~~l~ell~~aDiV~l 217 (331)
.+|+|+| .|.+|+.+++.|.... +++.++.++... .. .. .. .+.+ .+.++|+|+.
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~DvVf~ 82 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPE-AVDDVDIVFS 82 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHH-HhcCCCEEEE
Confidence 6899998 8999999999998653 477766332211 11 10 00 1233 3478999999
Q ss_pred eccCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 020073 218 CCALTDQTRRMINREVMLALGKEGIIVNVGR 248 (331)
Q Consensus 218 ~~P~t~~t~~li~~~~l~~mk~ga~lIn~sr 248 (331)
++|.... ..+. + .+ .+.|..+|+.+-
T Consensus 83 a~p~~~s-~~~~-~-~~--~~~G~~vIDls~ 108 (349)
T PRK08664 83 ALPSDVA-GEVE-E-EF--AKAGKPVFSNAS 108 (349)
T ss_pred eCChhHH-HHHH-H-HH--HHCCCEEEECCc
Confidence 9986532 2232 1 12 145676777653
No 453
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=92.31 E-value=0.88 Score=42.86 Aligned_cols=37 Identities=35% Similarity=0.513 Sum_probs=32.6
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS 193 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~ 193 (331)
..|.+.+|.|+|+|.+|.++|+.|...|. +|..+|..
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d 52 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTK 52 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 35889999999999999999999999898 68887754
No 454
>PRK06114 short chain dehydrogenase; Provisional
Probab=92.30 E-value=0.46 Score=43.06 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=33.1
Q ss_pred cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCC
Q 020073 158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSK 194 (331)
Q Consensus 158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~ 194 (331)
++.|+++.|.| .|.||+++|+.|...|++|++.+++.
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~ 42 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRT 42 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence 47899999999 67999999999999999999988764
No 455
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=92.28 E-value=0.37 Score=45.63 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=32.1
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK 195 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~ 195 (331)
.|.+|.|.|.|.+|+.+++.++.+|.+|++.+++..
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~ 198 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSD 198 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChH
Confidence 478999999999999999999999999988877643
No 456
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=92.27 E-value=0.27 Score=47.67 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=41.2
Q ss_pred eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCCC-----c---cccCC---HHhhhc--CCCEEEEe
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVP-----Y---AFYSN---VCELAA--NSDALIIC 218 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~---~~~~~---l~ell~--~aDiV~l~ 218 (331)
+|+|||.|..|..+++.++.+|++|++++.++.... . ....+ +.++++ +.|.|+..
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~ 69 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYIVPE 69 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEEEec
Confidence 589999999999999999999999999988764411 0 01223 445555 68888754
No 457
>PRK05884 short chain dehydrogenase; Provisional
Probab=92.25 E-value=0.4 Score=42.87 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=28.6
Q ss_pred eEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073 163 RVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKK 195 (331)
Q Consensus 163 ~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~ 195 (331)
++.|.|. |.||+++|+.+...|++|+..+|+.+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~ 35 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRD 35 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 5788885 89999999999999999999888643
No 458
>PLN02427 UDP-apiose/xylose synthase
Probab=92.25 E-value=0.34 Score=47.03 Aligned_cols=64 Identities=19% Similarity=0.145 Sum_probs=47.0
Q ss_pred CccCCCceEEEEe-cChHHHHHHHHHhhC-CCEEEEECCCCCC------C-------Ccc-------ccCCHHhhhcCCC
Q 020073 156 GSKLGGKRVGIVG-LGNIGLQVAKRLQAF-GCNVLYNSRSKKP------V-------PYA-------FYSNVCELAANSD 213 (331)
Q Consensus 156 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~~-G~~V~~~~~~~~~------~-------~~~-------~~~~l~ell~~aD 213 (331)
|+.++.++|.|.| .|-||+.+++.|... |.+|++++++... . ... ...++.++++++|
T Consensus 9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d 88 (386)
T PLN02427 9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD 88 (386)
T ss_pred CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence 6677888999999 699999999999987 5899988875421 0 010 1124567788899
Q ss_pred EEEEec
Q 020073 214 ALIICC 219 (331)
Q Consensus 214 iV~l~~ 219 (331)
+|+-+.
T Consensus 89 ~ViHlA 94 (386)
T PLN02427 89 LTINLA 94 (386)
T ss_pred EEEEcc
Confidence 877655
No 459
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.21 E-value=0.39 Score=45.75 Aligned_cols=87 Identities=14% Similarity=0.185 Sum_probs=56.7
Q ss_pred ceEEEEec-ChHHHHHHHHHhhCCC--EEEEECCCCCC--------CC---cccc-----CCHHhhhcCCCEEEEeccC-
Q 020073 162 KRVGIVGL-GNIGLQVAKRLQAFGC--NVLYNSRSKKP--------VP---YAFY-----SNVCELAANSDALIICCAL- 221 (331)
Q Consensus 162 ~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~~~~~~~--------~~---~~~~-----~~l~ell~~aDiV~l~~P~- 221 (331)
.+|+|||. |.+|..+|-.+...|. ++..+|.. .. .. .... .++.+.+++||+|+++.-.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~ 79 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVP 79 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCC
Confidence 37999999 9999999999987665 78888876 32 01 1111 2346889999999998732
Q ss_pred -Ch-hhhh-hc--cHH-------HHhcCCCCcEEEEcCCC
Q 020073 222 -TD-QTRR-MI--NRE-------VMLALGKEGIIVNVGRG 249 (331)
Q Consensus 222 -t~-~t~~-li--~~~-------~l~~mk~ga~lIn~srg 249 (331)
.+ +++- ++ |.+ .+..-.|.+++|+++-.
T Consensus 80 ~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP 119 (310)
T cd01337 80 RKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP 119 (310)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 22 2221 11 222 23334688999999743
No 460
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=92.18 E-value=0.33 Score=46.39 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=32.2
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK 195 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~ 195 (331)
.|.+|.|+|.|.+|..+++.++..|.+|++.++++.
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~ 201 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPE 201 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHH
Confidence 478999999999999999999999999988877654
No 461
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=92.17 E-value=0.15 Score=47.71 Aligned_cols=58 Identities=31% Similarity=0.410 Sum_probs=39.9
Q ss_pred ceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcC--CCEEEEeccC
Q 020073 162 KRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAAN--SDALIICCAL 221 (331)
Q Consensus 162 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l~~P~ 221 (331)
++|.|+| -|.+|+.+.+.++..|.+|+.+++..-. ......+.+++.+ .|+|+.|.-.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~d--l~d~~~~~~~~~~~~pd~Vin~aa~ 61 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLD--LTDPEAVAKLLEAFKPDVVINCAAY 61 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS---TTSHHHHHHHHHHH--SEEEE----
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcC--CCCHHHHHHHHHHhCCCeEecccee
Confidence 4799999 6999999999999999999999776322 2222345555543 8999988644
No 462
>PRK07806 short chain dehydrogenase; Provisional
Probab=92.14 E-value=0.34 Score=43.51 Aligned_cols=37 Identities=38% Similarity=0.479 Sum_probs=32.4
Q ss_pred cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCC
Q 020073 158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSK 194 (331)
Q Consensus 158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~ 194 (331)
.+.|+++.|.|. |.||+.+++.|...|++|++.+|+.
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 367899999995 9999999999999999998887754
No 463
>PRK07825 short chain dehydrogenase; Provisional
Probab=92.08 E-value=0.43 Score=43.66 Aligned_cols=37 Identities=38% Similarity=0.516 Sum_probs=32.5
Q ss_pred cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCC
Q 020073 158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSK 194 (331)
Q Consensus 158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~ 194 (331)
++.|+++.|.|. |.||+.+|+.|...|++|+..+|+.
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~ 39 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDE 39 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence 367899999995 9999999999999999999888764
No 464
>PRK08589 short chain dehydrogenase; Validated
Probab=92.04 E-value=0.39 Score=44.13 Aligned_cols=36 Identities=31% Similarity=0.262 Sum_probs=32.7
Q ss_pred cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCC
Q 020073 158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRS 193 (331)
Q Consensus 158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~ 193 (331)
.+.||++.|.|. |.||+++|+.|...|++|++.+|+
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 477999999996 889999999999999999998876
No 465
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=92.04 E-value=0.39 Score=45.37 Aligned_cols=60 Identities=22% Similarity=0.260 Sum_probs=47.2
Q ss_pred CCCceEEEEe---cChHHHHHHHHHhhCCCEEEEECCCCCC-----------CC-c-cccCCHHhhhcCCCEEEEe
Q 020073 159 LGGKRVGIVG---LGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------VP-Y-AFYSNVCELAANSDALIIC 218 (331)
Q Consensus 159 l~g~~vgIiG---~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------~~-~-~~~~~l~ell~~aDiV~l~ 218 (331)
+.|++|+|+| +|+..++.++.|..||.+|..+.+..-. .+ . ..+...++.+.++|++.+.
T Consensus 156 ~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~l 231 (316)
T COG0540 156 LDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYML 231 (316)
T ss_pred cCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEee
Confidence 8899999999 9999999999999999999999875321 11 1 2234455599999988653
No 466
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=92.03 E-value=0.48 Score=46.58 Aligned_cols=61 Identities=20% Similarity=0.177 Sum_probs=51.0
Q ss_pred CCCceEEEEecC----------hHHHHHHHHHhhCCCEEEEECCCCCC---CCccccCCHHhhhcCCCEEEEec
Q 020073 159 LGGKRVGIVGLG----------NIGLQVAKRLQAFGCNVLYNSRSKKP---VPYAFYSNVCELAANSDALIICC 219 (331)
Q Consensus 159 l~g~~vgIiG~G----------~IG~~~A~~l~~~G~~V~~~~~~~~~---~~~~~~~~l~ell~~aDiV~l~~ 219 (331)
..|++|+|+|+. +-+..+++.|...|.+|.+||+.... .+.....++.++++.||.|++..
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDSFFNSRLERDLATFKQQADVIISNR 367 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchhhcCCeeeCCHHHHHHhCCEEEEcC
Confidence 368999999983 67789999999999999999997544 23445679999999999999875
No 467
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.01 E-value=0.92 Score=41.43 Aligned_cols=36 Identities=22% Similarity=0.463 Sum_probs=32.0
Q ss_pred cCCCceEEEEec---ChHHHHHHHHHhhCCCEEEEECCC
Q 020073 158 KLGGKRVGIVGL---GNIGLQVAKRLQAFGCNVLYNSRS 193 (331)
Q Consensus 158 ~l~g~~vgIiG~---G~IG~~~A~~l~~~G~~V~~~~~~ 193 (331)
.+.||++.|.|. +.||+++|+.|...|++|+..+|+
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~ 42 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAG 42 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCc
Confidence 477999999997 589999999999999999887764
No 468
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=92.00 E-value=0.33 Score=44.70 Aligned_cols=57 Identities=23% Similarity=0.241 Sum_probs=42.7
Q ss_pred eEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCC--CEEEEeccC
Q 020073 163 RVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANS--DALIICCAL 221 (331)
Q Consensus 163 ~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~a--DiV~l~~P~ 221 (331)
+|.|+| .|.||+.+++.|...|.+|++.+|.... .....++.+++... |+|+.+...
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~d--~~~~~~~~~~~~~~~~d~vi~~a~~ 60 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQLD--LTDPEALERLLRAIRPDAVVNTAAY 60 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCcccC--CCCHHHHHHHHHhCCCCEEEECCcc
Confidence 478899 5999999999999999999998886322 12234566777765 998877643
No 469
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=91.99 E-value=0.4 Score=52.50 Aligned_cols=64 Identities=31% Similarity=0.402 Sum_probs=52.4
Q ss_pred CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC---------------------------CCc--------cccC
Q 020073 159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP---------------------------VPY--------AFYS 203 (331)
Q Consensus 159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~---------------------------~~~--------~~~~ 203 (331)
-.|++|+|||-|.-|-+.|..|-..|..|++|.|+.+. .+. ....
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~v 1862 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHV 1862 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccccc
Confidence 47999999999999999999999999999999887643 011 1125
Q ss_pred CHHhhhcCCCEEEEeccCC
Q 020073 204 NVCELAANSDALIICCALT 222 (331)
Q Consensus 204 ~l~ell~~aDiV~l~~P~t 222 (331)
++|++.++-|.|++|.-.|
T Consensus 1863 s~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1863 SLDELKKENDAIVLATGST 1881 (2142)
T ss_pred cHHHHhhccCeEEEEeCCC
Confidence 8999999999999997544
No 470
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=91.97 E-value=0.36 Score=46.19 Aligned_cols=37 Identities=27% Similarity=0.275 Sum_probs=32.4
Q ss_pred CCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073 159 LGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK 195 (331)
Q Consensus 159 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~ 195 (331)
++|+++.|.| .|-||+.+++.|...|.+|++.+|...
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 39 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP 39 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence 4688999999 599999999999999999999887654
No 471
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=91.97 E-value=0.49 Score=43.24 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=30.8
Q ss_pred cCCCceEEEEec---ChHHHHHHHHHhhCCCEEEEECCC
Q 020073 158 KLGGKRVGIVGL---GNIGLQVAKRLQAFGCNVLYNSRS 193 (331)
Q Consensus 158 ~l~g~~vgIiG~---G~IG~~~A~~l~~~G~~V~~~~~~ 193 (331)
++.||++.|.|. +.||+++|+.+...|++|+...+.
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~ 41 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLP 41 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence 467999999997 489999999999999999776543
No 472
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=91.95 E-value=0.2 Score=44.46 Aligned_cols=37 Identities=30% Similarity=0.467 Sum_probs=32.1
Q ss_pred ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS 193 (331)
Q Consensus 157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~ 193 (331)
+.|++++|.|||+|.+|.++|+.|...|. ++..+|..
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 35889999999999999999999999898 57777654
No 473
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=91.93 E-value=0.2 Score=49.53 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=26.3
Q ss_pred ceEEEEecChHHHHHHHHHhh-CCCEEEEEC
Q 020073 162 KRVGIVGLGNIGLQVAKRLQA-FGCNVLYNS 191 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~-~G~~V~~~~ 191 (331)
.+|||.|||+||+.++|.+.. ++++|++.+
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaIN 116 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVN 116 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEec
Confidence 589999999999999999875 789988744
No 474
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=91.90 E-value=0.7 Score=43.64 Aligned_cols=87 Identities=17% Similarity=0.207 Sum_probs=55.5
Q ss_pred eEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------CC-----------------c--cc----cCC
Q 020073 163 RVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------VP-----------------Y--AF----YSN 204 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~~-----------------~--~~----~~~ 204 (331)
+|.|||+|.+|.++++.|...|+ ++.+.|...-. .+ . .. ..+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 58999999999999999998888 67776632100 00 0 00 011
Q ss_pred -HHhhhcCCCEEEEeccCChhhhhhccHHHHhcC-----CCCcEEEEcCCCC
Q 020073 205 -VCELAANSDALIICCALTDQTRRMINREVMLAL-----GKEGIIVNVGRGA 250 (331)
Q Consensus 205 -l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~m-----k~ga~lIn~srg~ 250 (331)
-.+.+++.|+|+.++- +.+++..+++...... +.+.-+|..+-.+
T Consensus 81 ~~~~f~~~fdvVi~alD-n~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G 131 (291)
T cd01488 81 KDEEFYRQFNIIICGLD-SIEARRWINGTLVSLLLYEDPESIIPLIDGGTEG 131 (291)
T ss_pred hhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHhccccccccCccEEEEEEcc
Confidence 2467888999988875 4567777777655443 2234566665443
No 475
>PRK12367 short chain dehydrogenase; Provisional
Probab=91.89 E-value=0.37 Score=44.03 Aligned_cols=63 Identities=29% Similarity=0.358 Sum_probs=46.5
Q ss_pred cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC-----C-C-c-------cccCCHHhhhcCCCEEEEecc
Q 020073 158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP-----V-P-Y-------AFYSNVCELAANSDALIICCA 220 (331)
Q Consensus 158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~-~-~-------~~~~~l~ell~~aDiV~l~~P 220 (331)
.+.|+++.|.|. |.||+++|+.+...|++|++.+|+... . . . ....++.+.+...|+++.+.-
T Consensus 11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG 88 (245)
T PRK12367 11 TWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQLASLDVLILNHG 88 (245)
T ss_pred hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCc
Confidence 578999999995 789999999999999999988876511 0 0 0 011234556778999998863
No 476
>PRK08862 short chain dehydrogenase; Provisional
Probab=91.86 E-value=0.38 Score=43.27 Aligned_cols=38 Identities=11% Similarity=0.295 Sum_probs=33.1
Q ss_pred cCCCceEEEEecC-hHHHHHHHHHhhCCCEEEEECCCCC
Q 020073 158 KLGGKRVGIVGLG-NIGLQVAKRLQAFGCNVLYNSRSKK 195 (331)
Q Consensus 158 ~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~ 195 (331)
+++|+++.|.|.+ .||+++|+.|...|++|+..+|+..
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~ 40 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQS 40 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 4689999999965 4999999999999999999988654
No 477
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=91.78 E-value=0.47 Score=45.22 Aligned_cols=84 Identities=24% Similarity=0.320 Sum_probs=55.4
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC------CCcc---cc--CC----HHhhhc--CCCEEEEeccC
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP------VPYA---FY--SN----VCELAA--NSDALIICCAL 221 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~------~~~~---~~--~~----l~ell~--~aDiV~l~~P~ 221 (331)
.|+++.|.|.|.+|+.+++.++..|+ +|++.+++..+ .+.. .. .+ +.++.. ..|+|+-+...
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~ 251 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGV 251 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCCC
Confidence 47899999999999999999999999 78888765433 1110 00 11 223332 37888877642
Q ss_pred ChhhhhhccHHHHhcCCCCcEEEEcCC
Q 020073 222 TDQTRRMINREVMLALGKEGIIVNVGR 248 (331)
Q Consensus 222 t~~t~~li~~~~l~~mk~ga~lIn~sr 248 (331)
... + ...+..+++++.++.++.
T Consensus 252 ~~~----~-~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 252 QAT----L-DTAIDALRPRGTAVNVAI 273 (351)
T ss_pred HHH----H-HHHHHhccCCCEEEEEcc
Confidence 221 1 344566888888888764
No 478
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.71 E-value=0.55 Score=43.19 Aligned_cols=35 Identities=23% Similarity=0.521 Sum_probs=31.6
Q ss_pred CCCceEEEEecC---hHHHHHHHHHhhCCCEEEEECCC
Q 020073 159 LGGKRVGIVGLG---NIGLQVAKRLQAFGCNVLYNSRS 193 (331)
Q Consensus 159 l~g~~vgIiG~G---~IG~~~A~~l~~~G~~V~~~~~~ 193 (331)
+.||++.|.|.+ .||+++|+.|...|++|+..+++
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~ 41 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN 41 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence 679999999987 59999999999999999887765
No 479
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=91.71 E-value=5.4 Score=41.16 Aligned_cols=186 Identities=18% Similarity=0.163 Sum_probs=114.4
Q ss_pred CCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhh--
Q 020073 105 RGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQA-- 182 (331)
Q Consensus 105 ~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~-- 182 (331)
..|.+.|..= .-+|-.+++.+|+.+|- .+++|...++.|+|.|.-|-.+|+.+..
T Consensus 288 ~~i~~FnDDi---QGTaaV~lAgll~A~r~--------------------~g~~l~d~riv~~GAGsAgigia~ll~~~~ 344 (581)
T PLN03129 288 TTHLCFNDDI---QGTAAVALAGLLAALRA--------------------TGGDLADQRILFAGAGEAGTGIAELIALAM 344 (581)
T ss_pred cCCCEecccc---chHHHHHHHHHHHHHHH--------------------hCCchhhceEEEECCCHHHHHHHHHHHHHH
Confidence 3566666522 24566677777776663 2456889999999999999999999876
Q ss_pred ---CCC-------EEEEECCCCC----CC------------CccccCCHHhhhcC--CCEEEEeccCChhhhhhccHHHH
Q 020073 183 ---FGC-------NVLYNSRSKK----PV------------PYAFYSNVCELAAN--SDALIICCALTDQTRRMINREVM 234 (331)
Q Consensus 183 ---~G~-------~V~~~~~~~~----~~------------~~~~~~~l~ell~~--aDiV~l~~P~t~~t~~li~~~~l 234 (331)
.|. +|+.+|+..- .. ......+|.|+++. +|+++-+- ..-+.++++.+
T Consensus 345 ~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi 420 (581)
T PLN03129 345 SRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLS----GVGGTFTKEVL 420 (581)
T ss_pred HhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEec----CCCCCCCHHHH
Confidence 466 7888876531 00 01123589999999 89888652 12378999999
Q ss_pred hcCC---CCcEEEEcCCCCccCHHHHHHHHH--hCC-ceEEEeecCCCCCCCCC----ccccCCceEEcCCCCCCcH---
Q 020073 235 LALG---KEGIIVNVGRGAVIDENEMVRCLV--RGE-IAGAGLDVFENEPYVPK----ELLELDNVVLQPHRAVFTS--- 301 (331)
Q Consensus 235 ~~mk---~ga~lIn~srg~~vd~~al~~aL~--~~~-i~ga~lDV~~~EP~~~~----~L~~~~nvilTPH~a~~t~--- 301 (331)
+.|. +..++.=.|...---|-.-.+|.+ +|+ |.+.|. =| +|..-+ ..=...|+++-|=++-...
T Consensus 421 ~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~AtGS-Pf--~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~ 497 (581)
T PLN03129 421 EAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGS-PF--DPVEYNGKTFHPGQANNAYIFPGIGLGALLSG 497 (581)
T ss_pred HHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEeCC-CC--CCeeeCCeeecCccccceeeccchhhHHHhcC
Confidence 9995 778888887765333322233333 255 543332 00 111001 1123458888888764322
Q ss_pred --HHHHHHHHHHHHHHHHHHc
Q 020073 302 --ECFVDLCELAVGNLEALFS 320 (331)
Q Consensus 302 --~~~~~~~~~~~~nl~~~~~ 320 (331)
.--+.|...+++-|..+..
T Consensus 498 a~~Itd~m~~aAA~aLA~~v~ 518 (581)
T PLN03129 498 AIRVTDDMLLAAAEALAAQVT 518 (581)
T ss_pred CcCCCHHHHHHHHHHHHHhCC
Confidence 2235666666666666554
No 480
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=91.63 E-value=0.57 Score=44.09 Aligned_cols=61 Identities=20% Similarity=0.156 Sum_probs=44.2
Q ss_pred CCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCC---------------------CccccCCHHhhhcCCCEEEE
Q 020073 160 GGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPV---------------------PYAFYSNVCELAANSDALII 217 (331)
Q Consensus 160 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~---------------------~~~~~~~l~ell~~aDiV~l 217 (331)
.|+++.|.| .|-||+.+++.|...|++|++..++.... +.....+++++++..|+|+.
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 378999999 59999999999999999998765543210 00112346677888998887
Q ss_pred ecc
Q 020073 218 CCA 220 (331)
Q Consensus 218 ~~P 220 (331)
+..
T Consensus 84 ~A~ 86 (325)
T PLN02989 84 TAS 86 (325)
T ss_pred eCC
Confidence 763
No 481
>PRK14852 hypothetical protein; Provisional
Probab=91.63 E-value=0.49 Score=51.44 Aligned_cols=157 Identities=15% Similarity=0.102 Sum_probs=89.9
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------C-------------------Ccc---
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------V-------------------PYA--- 200 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~-------------------~~~--- 200 (331)
.|++++|+|||+|.+|..+|+.|...|. ++...|...-. . ...
T Consensus 329 kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~ 408 (989)
T PRK14852 329 RLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFP 408 (989)
T ss_pred HHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEe
Confidence 5899999999999999999999998888 56655432100 0 000
Q ss_pred ---ccCCHHhhhcCCCEEEEeccCC-hhhhhhccHHHHhcCCCCcEEEEcCCCC------------ccCHHHHHHH----
Q 020073 201 ---FYSNVCELAANSDALIICCALT-DQTRRMINREVMLALGKEGIIVNVGRGA------------VIDENEMVRC---- 260 (331)
Q Consensus 201 ---~~~~l~ell~~aDiV~l~~P~t-~~t~~li~~~~l~~mk~ga~lIn~srg~------------~vd~~al~~a---- 260 (331)
...+++++++.+|+|+-|+-.- -+.+..+...-. +.+.-+|..+-.+ ...++- .+.
T Consensus 409 ~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~---~~~IP~I~ag~~G~~g~v~v~~p~~~~~~~~-f~~~~~~ 484 (989)
T PRK14852 409 EGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRAL---ELGIPVITAGPLGYSCALLVFMPGGMNFDSY-FGIDDDT 484 (989)
T ss_pred cCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHH---HcCCCEEEeeccccCeeEEEEcCCCCCHHHh-CCCCCCC
Confidence 1135778889999999887541 123333333322 3333444443311 111100 000
Q ss_pred -HHhCCceEEEeecCCCCCCCCC-ccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 020073 261 -LVRGEIAGAGLDVFENEPYVPK-ELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQ 322 (331)
Q Consensus 261 -L~~~~i~ga~lDV~~~EP~~~~-~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~ 322 (331)
...|-++ .++ ...|.+-. ...+..+|-+.=+.+-++..+..-.+-.++....+++-|+
T Consensus 485 p~~~~~~~-~~l---~~~p~~~~~~~~~~~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~ 544 (989)
T PRK14852 485 PPMEGYLR-FGM---GLAPRPAHLGYMDRRFVSLHDRRGPSLDIACHLCAGMAATEAVRILLHR 544 (989)
T ss_pred chHhhhhh-hhc---cCCcchhhhcccCcccccccccCCCchHHHHHHhHHHHHHHHHHHHhCC
Confidence 0001111 111 22222111 3346667767667788888888888889999999999887
No 482
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=91.60 E-value=0.34 Score=44.10 Aligned_cols=39 Identities=33% Similarity=0.433 Sum_probs=34.1
Q ss_pred cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073 158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP 196 (331)
Q Consensus 158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~ 196 (331)
.+.|+++.|.| .|.||+++|+.|...|++|+..+++...
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~ 45 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGD 45 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccc
Confidence 47899999999 6899999999999999999988876543
No 483
>PRK10537 voltage-gated potassium channel; Provisional
Probab=91.60 E-value=0.47 Score=46.74 Aligned_cols=67 Identities=12% Similarity=-0.053 Sum_probs=44.5
Q ss_pred CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC----CCc-------cccCCHHh-hhcCCCEEEEeccCChhhhh
Q 020073 161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP----VPY-------AFYSNVCE-LAANSDALIICCALTDQTRR 227 (331)
Q Consensus 161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----~~~-------~~~~~l~e-ll~~aDiV~l~~P~t~~t~~ 227 (331)
...+.|+|+|.+|+.+++.|+..|.++++.+..... .+. ...+.|++ -+++|+.|+.+++.+.++..
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ 318 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAF 318 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHH
Confidence 457999999999999999999989888777643211 111 00112333 25678888888776554443
No 484
>PRK05865 hypothetical protein; Provisional
Probab=91.60 E-value=0.84 Score=49.30 Aligned_cols=89 Identities=20% Similarity=0.281 Sum_probs=56.2
Q ss_pred ceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC---CCc-------cccCCHHhhhcCCCEEEEeccCChhh--hhh
Q 020073 162 KRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP---VPY-------AFYSNVCELAANSDALIICCALTDQT--RRM 228 (331)
Q Consensus 162 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~---~~~-------~~~~~l~ell~~aDiV~l~~P~t~~t--~~l 228 (331)
++|.|.| .|.||+.+++.|...|.+|++++++... ... ....++.++++.+|+|+.+....... .++
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~~~~~vNv 80 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSWPSSADFIAADIRDATAVESAMTGADVVAHCAWVRGRNDHINI 80 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhcccCceEEEeeCCCHHHHHHHHhCCCEEEECCCcccchHHHHH
Confidence 3689999 5999999999999999999998876422 111 11234667788999988876432110 011
Q ss_pred c-cHHHHhcCCCC--cEEEEcCCCC
Q 020073 229 I-NREVMLALGKE--GIIVNVGRGA 250 (331)
Q Consensus 229 i-~~~~l~~mk~g--a~lIn~srg~ 250 (331)
. ....++.|+.. ..+|.+|.+.
T Consensus 81 ~GT~nLLeAa~~~gvkr~V~iSS~~ 105 (854)
T PRK05865 81 DGTANVLKAMAETGTGRIVFTSSGH 105 (854)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCcH
Confidence 1 12233444322 3688888764
No 485
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=91.58 E-value=0.35 Score=46.16 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=27.1
Q ss_pred ceEEEEecChHHHHHHHHHhhCC--CEEEEECC
Q 020073 162 KRVGIVGLGNIGLQVAKRLQAFG--CNVLYNSR 192 (331)
Q Consensus 162 ~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~ 192 (331)
-+|||=|||+||+.+++.+...+ ++|++.+.
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd 34 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAIND 34 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEec
Confidence 37999999999999999998764 89988765
No 486
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=91.53 E-value=0.95 Score=43.63 Aligned_cols=81 Identities=11% Similarity=0.122 Sum_probs=48.6
Q ss_pred ceEEEEe-cChHHHHHHHHHhhCCC---EEEEECCCC--CC-C---Cc-cccCCHH-hhhcCCCEEEEeccCChhhhhhc
Q 020073 162 KRVGIVG-LGNIGLQVAKRLQAFGC---NVLYNSRSK--KP-V---PY-AFYSNVC-ELAANSDALIICCALTDQTRRMI 229 (331)
Q Consensus 162 ~~vgIiG-~G~IG~~~A~~l~~~G~---~V~~~~~~~--~~-~---~~-~~~~~l~-ell~~aDiV~l~~P~t~~t~~li 229 (331)
.+|+|+| .|.+|+++.+.|...++ ++.+..... .+ . +. ....+++ +.++++|+|++++|.. ....++
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~~~~vD~vFla~p~~-~s~~~v 83 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFDFSQVQLAFFAAGAA-VSRSFA 83 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHHhcCCCEEEEcCCHH-HHHHHH
Confidence 5799999 59999999999995444 333332221 11 1 10 1112222 2258899999999943 333333
Q ss_pred cHHHHhcCCCCcEEEEcC
Q 020073 230 NREVMLALGKEGIIVNVG 247 (331)
Q Consensus 230 ~~~~l~~mk~ga~lIn~s 247 (331)
.+ . .+.|..+||.|
T Consensus 84 ~~-~---~~~G~~VIDlS 97 (336)
T PRK05671 84 EK-A---RAAGCSVIDLS 97 (336)
T ss_pred HH-H---HHCCCeEEECc
Confidence 21 1 25688999988
No 487
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=91.49 E-value=0.34 Score=47.92 Aligned_cols=62 Identities=29% Similarity=0.449 Sum_probs=46.5
Q ss_pred cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC----C-----Cc-------cccCCHHhhhcCCCEEEEec
Q 020073 158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP----V-----PY-------AFYSNVCELAANSDALIICC 219 (331)
Q Consensus 158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~----~-----~~-------~~~~~l~ell~~aDiV~l~~ 219 (331)
.++||++.|.|. |.||+++|+.+...|++|+..+++.+. . .. ....++.+.+.+.|+++.+.
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnA 253 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINH 253 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECC
Confidence 578999999995 999999999999999999988876432 0 00 01123556678899998865
No 488
>PRK06179 short chain dehydrogenase; Provisional
Probab=91.35 E-value=0.29 Score=44.75 Aligned_cols=36 Identities=28% Similarity=0.340 Sum_probs=31.3
Q ss_pred CCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073 160 GGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK 195 (331)
Q Consensus 160 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~ 195 (331)
.++++.|.| .|.||+++|+.|...|++|++.+|+..
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~ 39 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPA 39 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence 357888999 699999999999999999999988754
No 489
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=91.32 E-value=0.62 Score=42.39 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=32.2
Q ss_pred CCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCC
Q 020073 159 LGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSK 194 (331)
Q Consensus 159 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~ 194 (331)
+.|+++.|.|. |.||+++|+.|...|++|++.+|+.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 39 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSA 39 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 67899999995 7899999999999999999988764
No 490
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.31 E-value=0.72 Score=42.08 Aligned_cols=37 Identities=27% Similarity=0.438 Sum_probs=32.7
Q ss_pred cCCCceEEEEecC---hHHHHHHHHHhhCCCEEEEECCCC
Q 020073 158 KLGGKRVGIVGLG---NIGLQVAKRLQAFGCNVLYNSRSK 194 (331)
Q Consensus 158 ~l~g~~vgIiG~G---~IG~~~A~~l~~~G~~V~~~~~~~ 194 (331)
++.||++.|.|.+ .||+++|+.|...|++|+..+|+.
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~ 46 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND 46 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 4789999999976 799999999999999998887764
No 491
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=91.31 E-value=0.67 Score=42.17 Aligned_cols=97 Identities=23% Similarity=0.409 Sum_probs=65.5
Q ss_pred cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCCh--hhhhhccHHHH
Q 020073 158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTD--QTRRMINREVM 234 (331)
Q Consensus 158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~--~t~~li~~~~l 234 (331)
++.||.+.++| +|.||.++++.|...|..+.+.+.+.+. ......|++..+.--+++.-|-.+. +++..+ ++.+
T Consensus 2 ~~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En--~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f-~ki~ 78 (261)
T KOG4169|consen 2 DLTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEEN--PEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAF-DKIL 78 (261)
T ss_pred cccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhC--HHHHHHHhccCCCceEEEEEeccccHHHHHHHH-HHHH
Confidence 46799998887 9999999999999999988887765543 1122346666666666666665543 333333 4567
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHH
Q 020073 235 LALGKEGIIVNVGRGAVIDENEMVR 259 (331)
Q Consensus 235 ~~mk~ga~lIn~srg~~vd~~al~~ 259 (331)
+.|+.=-++||.+ ++.|+.+..+
T Consensus 79 ~~fg~iDIlINgA--Gi~~dkd~e~ 101 (261)
T KOG4169|consen 79 ATFGTIDILINGA--GILDDKDWER 101 (261)
T ss_pred HHhCceEEEEccc--ccccchhHHH
Confidence 7777767788864 5555555433
No 492
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=91.27 E-value=0.49 Score=44.45 Aligned_cols=86 Identities=19% Similarity=0.188 Sum_probs=53.8
Q ss_pred CCceEEEEecChHHHHHHHHHhhCCCE-EEEECCCCCC------CCcc---cc--CCHH--h--hhcCCCEEEEeccCCh
Q 020073 160 GGKRVGIVGLGNIGLQVAKRLQAFGCN-VLYNSRSKKP------VPYA---FY--SNVC--E--LAANSDALIICCALTD 223 (331)
Q Consensus 160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~~~------~~~~---~~--~~l~--e--ll~~aDiV~l~~P~t~ 223 (331)
.|.++.|+|.|.+|+.+++.++..|++ |.+.+++.+. .+.. .. .+.. . .-...|+++-+.+...
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~~ 238 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVPK 238 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCChH
Confidence 468999999999999999999999997 7777765432 0110 00 0110 1 1234787777654221
Q ss_pred hhhhhccHHHHhcCCCCcEEEEcCCCC
Q 020073 224 QTRRMINREVMLALGKEGIIVNVGRGA 250 (331)
Q Consensus 224 ~t~~li~~~~l~~mk~ga~lIn~srg~ 250 (331)
.....+..|++++.+|.++...
T Consensus 239 -----~~~~~~~~l~~~G~~v~~g~~~ 260 (334)
T cd08234 239 -----TLEQAIEYARRGGTVLVFGVYA 260 (334)
T ss_pred -----HHHHHHHHHhcCCEEEEEecCC
Confidence 1233456677777788776543
No 493
>PRK05717 oxidoreductase; Validated
Probab=91.27 E-value=0.61 Score=42.20 Aligned_cols=37 Identities=27% Similarity=0.350 Sum_probs=33.2
Q ss_pred cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCC
Q 020073 158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSK 194 (331)
Q Consensus 158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~ 194 (331)
.+.||++.|.| .|.||+.+|+.|...|++|+..+++.
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~ 44 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR 44 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH
Confidence 47899999999 59999999999999999999988764
No 494
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=91.22 E-value=0.54 Score=45.85 Aligned_cols=81 Identities=17% Similarity=0.256 Sum_probs=48.4
Q ss_pred ceEEEEe-cChHHHHHHH-HHhhCCCE---EEEECCCCCC---C---C--ccccCCH-HhhhcCCCEEEEeccCChhhhh
Q 020073 162 KRVGIVG-LGNIGLQVAK-RLQAFGCN---VLYNSRSKKP---V---P--YAFYSNV-CELAANSDALIICCALTDQTRR 227 (331)
Q Consensus 162 ~~vgIiG-~G~IG~~~A~-~l~~~G~~---V~~~~~~~~~---~---~--~~~~~~l-~ell~~aDiV~l~~P~t~~t~~ 227 (331)
.+||||| .|.+|+.+.+ .+..-.+. +..++..... . + ....... .+.++++|++++|+|.. .+..
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~~~~~~Divf~a~~~~-~s~~ 80 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDIDALKKLDIIITCQGGD-YTNE 80 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChhHhcCCCEEEECCCHH-HHHH
Confidence 4799999 5999999998 66655665 5555443211 1 1 1111111 23458899999999854 3333
Q ss_pred hccHHHHhcCCCC--cEEEEcC
Q 020073 228 MINREVMLALGKE--GIIVNVG 247 (331)
Q Consensus 228 li~~~~l~~mk~g--a~lIn~s 247 (331)
+. ... .+.| +++|+.|
T Consensus 81 ~~-~~~---~~aG~~~~VID~S 98 (369)
T PRK06598 81 VY-PKL---RAAGWQGYWIDAA 98 (369)
T ss_pred HH-HHH---HhCCCCeEEEECC
Confidence 32 111 2456 6788887
No 495
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.22 E-value=0.36 Score=43.22 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=33.4
Q ss_pred cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCC
Q 020073 158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSK 194 (331)
Q Consensus 158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~ 194 (331)
++.|+++.|.|. |.||+.+|+.+...|.+|+..+++.
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~ 39 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ 39 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 367899999997 9999999999999999999888865
No 496
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=91.20 E-value=0.48 Score=43.50 Aligned_cols=57 Identities=26% Similarity=0.214 Sum_probs=41.9
Q ss_pred EEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCc---c---c--cCCHHhhhcCCCEEEEecc
Q 020073 164 VGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPY---A---F--YSNVCELAANSDALIICCA 220 (331)
Q Consensus 164 vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~---~---~--~~~l~ell~~aDiV~l~~P 220 (331)
|.|.| .|.||+.+++.|...|++|++.+|+...... . . ...+.+.+.++|+|+.+..
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~ 66 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAG 66 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCC
Confidence 35677 6999999999999999999999987654110 0 0 1244567788999887774
No 497
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=91.19 E-value=0.25 Score=42.09 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=25.4
Q ss_pred eEEEEecChHHHHHHHHHh-hCCCEEEEECCC
Q 020073 163 RVGIVGLGNIGLQVAKRLQ-AFGCNVLYNSRS 193 (331)
Q Consensus 163 ~vgIiG~G~IG~~~A~~l~-~~G~~V~~~~~~ 193 (331)
+|||-|||+||+.+++.+. .-.++|++.+..
T Consensus 2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~ 33 (151)
T PF00044_consen 2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDP 33 (151)
T ss_dssp EEEEESTSHHHHHHHHHHHTSTTEEEEEEEES
T ss_pred EEEEECCCcccHHHHHhhcccceEEEEEEecc
Confidence 7999999999999999987 456788766543
No 498
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=91.13 E-value=0.63 Score=45.34 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=31.8
Q ss_pred CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073 161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP 196 (331)
Q Consensus 161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~ 196 (331)
.++|+|||.|..|+.+++.++.+|.+|+.++..+..
T Consensus 12 ~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~~~ 47 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANA 47 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 568999999999999999999999999988876543
No 499
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=91.09 E-value=0.87 Score=44.86 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=47.4
Q ss_pred cCCCceEEEEec-----C---hHHHHHHHHHhhCCCEEEEECCCCCC-----C----------C--ccccCCHHhhhcCC
Q 020073 158 KLGGKRVGIVGL-----G---NIGLQVAKRLQAFGCNVLYNSRSKKP-----V----------P--YAFYSNVCELAANS 212 (331)
Q Consensus 158 ~l~g~~vgIiG~-----G---~IG~~~A~~l~~~G~~V~~~~~~~~~-----~----------~--~~~~~~l~ell~~a 212 (331)
.+.|++|+|+|- | ++.++++..+..+|++|.+..+..-. . + .....+++++++++
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a 263 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA 263 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 478999999985 5 66789999999999999988875311 0 1 12347899999999
Q ss_pred CEEEEe
Q 020073 213 DALIIC 218 (331)
Q Consensus 213 DiV~l~ 218 (331)
|+|..-
T Consensus 264 DvVYtd 269 (395)
T PRK07200 264 DIVYPK 269 (395)
T ss_pred CEEEEc
Confidence 999875
No 500
>PRK06153 hypothetical protein; Provisional
Probab=91.07 E-value=0.24 Score=48.43 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=31.5
Q ss_pred cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECC
Q 020073 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSR 192 (331)
Q Consensus 158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~ 192 (331)
.|++++|+|||+|.+|..++..|...|. +++.+|.
T Consensus 173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~ 208 (393)
T PRK06153 173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG 208 (393)
T ss_pred HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence 5899999999999999999999999998 7777764
Done!