RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 020074
(331 letters)
>gnl|CDD|215244 PLN02445, PLN02445, anthranilate synthase component I.
Length = 523
Score = 730 bits (1886), Expect = 0.0
Identities = 284/330 (86%), Positives = 301/330 (91%)
Query: 1 MNRLENLVARVHDIVPPRLRKGSIKLHTRHFGPKLESSSMTSEAYKEAVLQAKEHILAGD 60
M RLE LV+R+ DI PP+L GS+KL T FGP LE S+MTSE YK AVLQAKEHILAGD
Sbjct: 194 MKRLEALVSRLQDINPPKLSPGSVKLSTNQFGPSLEKSNMTSEEYKNAVLQAKEHILAGD 253
Query: 61 IFQIVLSQRFERRTFADPFEIYRALRIVNPSPYMTYLQARGCILVASSPEILTRVKKRKI 120
IFQIVLSQRFERRTFADPFE+YRALRIVNPSPYM YLQARGCILVASSPEILTRVKK KI
Sbjct: 254 IFQIVLSQRFERRTFADPFEVYRALRIVNPSPYMIYLQARGCILVASSPEILTRVKKNKI 313
Query: 121 TNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVDLGRNDVGKVSKSGSVKVEKL 180
NRPLAGT RRGKTP+ED EK+LL DEKQCAEHIMLVDLGRNDVGKVSK+GSVKVEKL
Sbjct: 314 VNRPLAGTRRRGKTPEEDKALEKDLLADEKQCAEHIMLVDLGRNDVGKVSKAGSVKVEKL 373
Query: 181 MNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGTVSGAPKVKAMELIDELEVTRRG 240
MNIE YSHVMHISSTVTGELLDHLTSWDALRAALPVGTVSGAPKV+AMELIDELEVTRRG
Sbjct: 374 MNIERYSHVMHISSTVTGELLDHLTSWDALRAALPVGTVSGAPKVRAMELIDELEVTRRG 433
Query: 241 PYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDVDKRREWIAHLQAGAGIVAD 300
PYSGGFGG+SFTGDMDIALALRT+VFPTA RYDTMYSYKD + RREW+AHLQAGAGIVAD
Sbjct: 434 PYSGGFGGVSFTGDMDIALALRTMVFPTAARYDTMYSYKDTNSRREWVAHLQAGAGIVAD 493
Query: 301 SDPNDEQKECENKAAGIARAIDLAESSFVD 330
SDP DE +EC NKAAG+ARAIDLAES+FV
Sbjct: 494 SDPEDEYRECVNKAAGLARAIDLAESAFVK 523
>gnl|CDD|233026 TIGR00564, trpE_most, anthranilate synthase component I,
non-proteobacterial lineages. This enzyme resembles
some other chorismate-binding enzymes, including
para-aminobenzoate synthase (pabB) and isochorismate
synthase. There is a fairly deep split between two sets,
seen in the pattern of gaps as well as in amino acid
sequence differences. Archaeal enzymes have been
excluded from this model (and are now found in
TIGR01820) as have a clade of enzymes which constitute a
TrpE paralog which may have PabB activity (TIGR01824).
This allows the B. subtilus paralog which has been shown
to have PabB activity to score below trusted to this
model. This model contains sequences from gram-positive
bacteria, certain proteobacteria, cyanobacteria, plants,
fungi and assorted other bacteria.A second family of
TrpE enzymes is modelled by TIGR00565. The breaking of
the TrpE family into these diverse models allows for the
separation of the models for the related enzyme, PabB
[Amino acid biosynthesis, Aromatic amino acid family].
Length = 454
Score = 453 bits (1167), Expect = e-159
Identities = 169/322 (52%), Positives = 212/322 (65%), Gaps = 25/322 (7%)
Query: 1 MNRLENLVARVHDIVPPRLRKGSIKLHTRHFGPKLESSSMTSEAYKEAVLQAKEHILAGD 60
RLE LVA + D + P ++ + +S+ E Y+ V +AKE+I AGD
Sbjct: 158 DARLEALVADLQDPLLP-------EVPVPYPAALSFTSNYEKEEYEANVAKAKEYIKAGD 210
Query: 61 IFQIVLSQRFERRTFADPFEIYRALRIVNPSPYMTYLQARGCILVASSPEILTRVKKRKI 120
IFQ+VLSQRFE +T A PFE+YR LRIVNPSPYM YL +V SSPE+L +V +I
Sbjct: 211 IFQVVLSQRFEAKTEAPPFELYRVLRIVNPSPYMYYLDFGDFQIVGSSPELLVKVTGGRI 270
Query: 121 TNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVDLGRNDVGKVSKSGSVKVEKL 180
T RP+AGT +RG TP+ED +ELL DEK+ AEH+MLVDLGRND+G+V + GSV+V +
Sbjct: 271 TTRPIAGTRKRGATPEEDEALAEELLADEKERAEHLMLVDLGRNDIGRVCEPGSVEVPEF 330
Query: 181 MNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGTVSGAPKVKAMELIDELEVTRRG 240
M IE YSHVMHI STV G L D LT+ DALRA P GTVSGAPK++AMELIDELE +RG
Sbjct: 331 MKIERYSHVMHIVSTVEGRLKDGLTAIDALRATFPAGTVSGAPKIRAMELIDELEPEKRG 390
Query: 241 PYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDVDKRREWIAHLQAGAGIVAD 300
Y G G +SF GDMD A+A+RT+V ++ A++QAG GIVAD
Sbjct: 391 IYGGAVGYLSFDGDMDTAIAIRTMVV------------------KDGKAYVQAGGGIVAD 432
Query: 301 SDPNDEQKECENKAAGIARAID 322
SDP E +E NKA + RAI+
Sbjct: 433 SDPEAEYEETLNKARALLRAIE 454
>gnl|CDD|223225 COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component
I [Amino acid transport and metabolism / Coenzyme
metabolism].
Length = 462
Score = 401 bits (1033), Expect = e-139
Identities = 160/324 (49%), Positives = 203/324 (62%), Gaps = 19/324 (5%)
Query: 3 RLENLVARVHDIVPPRLRKGSIKLHTRHFGPKLE-SSSMTSEAYKEAVLQAKEHILAGDI 61
L A + + RL L E S++ EAY+EAV +AKE+I AGDI
Sbjct: 153 YLIAFGAERLEQLLARLEDALAPLPEGDPPLPREVQSNLDREAYEEAVRKAKEYIRAGDI 212
Query: 62 FQIVLSQRFERRTFADPFEIYRALRIVNPSPYMTYLQARGCILVASSPEILTRVKKRKIT 121
+Q+VLS+RFE DP +YR LR NPSPYM +L+ LV +SPE+ +V +I
Sbjct: 213 YQVVLSRRFEAPCDGDPLALYRRLRQRNPSPYMFFLRLGDFTLVGASPELFVKVDGNRIE 272
Query: 122 NRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVDLGRNDVGKVSKSGSVKVEKLM 181
RP+AGT RG P+ED E ELLNDEK+ AEH+MLVDL RND+G+V + GSVKV +LM
Sbjct: 273 TRPIAGTRPRGADPEEDEALEAELLNDEKERAEHLMLVDLARNDLGRVCEPGSVKVPELM 332
Query: 182 NIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGTVSGAPKVKAMELIDELEVTRRGP 241
+E YSHVMH+ STVTG L L + DALRA P GTV+GAPKV+AME+I+ELE + RG
Sbjct: 333 EVERYSHVMHLVSTVTGRLKPGLDALDALRALFPAGTVTGAPKVRAMEIIEELEPSPRGI 392
Query: 242 YSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDVDKRREWIAHLQAGAGIVADS 301
Y G G +SF GD+D A+A+RT D R A++QAGAGIVADS
Sbjct: 393 YGGAVGYLSFNGDLDFAIAIRTAEL--------------KDGR----AYVQAGAGIVADS 434
Query: 302 DPNDEQKECENKAAGIARAIDLAE 325
DP E +E NKA + RA++LAE
Sbjct: 435 DPEAEYEETLNKARALLRALELAE 458
>gnl|CDD|184146 PRK13565, PRK13565, anthranilate synthase component I; Provisional.
Length = 490
Score = 377 bits (971), Expect = e-129
Identities = 162/323 (50%), Positives = 200/323 (61%), Gaps = 26/323 (8%)
Query: 3 RLENLVARVHDIVPPRLRKGSIKLHTRHFGPKLESSSMTSEAYKEAVLQAKEHILAGDIF 62
RL L AR+ V P + S + S T E Y AV +AKE+I AGD
Sbjct: 187 RLRELRARLRQPVAPPVTSASSRTEFV--------SEFTKEDYLAAVRKAKEYIAAGDCM 238
Query: 63 QIVLSQRFERRTFADPFEIYRALRIVNPSPYMTYLQARGCILVASSPEILTRVKKRKITN 122
Q+V SQR + A P +YRALR +NPSPYM + +V SSPEIL R + R +T
Sbjct: 239 QVVPSQRLSKPFRASPLSLYRALRSLNPSPYMYFYNFGDFHVVGSSPEILVRQEDRIVTV 298
Query: 123 RPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVDLGRNDVGKVSKSGSVKVEKLMN 182
RP+AGT RG TP+EDL E ELL D K+ AEH+ML+DLGRNDVG+V+++GSVKV + M
Sbjct: 299 RPIAGTRPRGATPEEDLALETELLADPKEIAEHVMLIDLGRNDVGRVAETGSVKVTEKMV 358
Query: 183 IEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGTVSGAPKVKAMELIDELEVTRRGPY 242
IE YSHVMHI S V G+L LT+ D LRA P GT+SGAPKV+AME+IDELE +RG Y
Sbjct: 359 IERYSHVMHIVSNVEGKLKPGLTNMDVLRATFPAGTLSGAPKVRAMEIIDELEPVKRGIY 418
Query: 243 SGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDVDKRREWIAHLQAGAGIVADSD 302
G G +SF GDMD+A+A+RT V KD ++QAGAGIVADS
Sbjct: 419 GGAVGYLSFNGDMDLAIAIRTAVI------------KD------GNLYVQAGAGIVADSV 460
Query: 303 PNDEQKECENKAAGIARAIDLAE 325
P E +E ENKA + RA + AE
Sbjct: 461 PELEWQETENKARAVLRAAEQAE 483
>gnl|CDD|237431 PRK13570, PRK13570, anthranilate synthase component I; Provisional.
Length = 455
Score = 360 bits (925), Expect = e-123
Identities = 146/283 (51%), Positives = 187/283 (66%), Gaps = 19/283 (6%)
Query: 33 PKLE-SSSMTSEAYKEAVLQAKEHILAGDIFQIVLSQRFERRTFADPFEIYRALRIVNPS 91
KL S++T E + V +AKE+I AGDIFQ+VLSQR DPF+ YR LR+ NPS
Sbjct: 184 SKLSFKSNITKEEFCGMVEKAKEYIRAGDIFQVVLSQRLSAEFTGDPFDYYRKLRVTNPS 243
Query: 92 PYMTYLQARGCILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQ 151
PY+ Y+ ++ SSPE L VK K+T P+AGT RGKT +ED KELL+DEK+
Sbjct: 244 PYLYYIDFGDYQVIGSSPESLVSVKGDKVTTNPIAGTRPRGKTKEEDEALAKELLSDEKE 303
Query: 152 CAEHIMLVDLGRNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALR 211
AEH MLVDLGRND+GK+S++GSVKV K M +E Y HVMH+ S V+G L LT++DAL+
Sbjct: 304 RAEHRMLVDLGRNDIGKISETGSVKVTKYMEVEKYRHVMHLVSEVSGTLRPGLTAFDALK 363
Query: 212 AALPVGTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATR 271
A LP GTVSGAPK++AME I ELE +RG Y+G G +S G+MD A+A+RT+V
Sbjct: 364 ATLPAGTVSGAPKIRAMERIYELENEKRGVYAGAVGYLSANGNMDFAIAIRTMVL----- 418
Query: 272 YDTMYSYKDVDKRREWIAHLQAGAGIVADSDPNDEQKECENKA 314
+ A++QAGAGIV DSDP +E +E NKA
Sbjct: 419 -------------KNGKAYVQAGAGIVYDSDPENEYQETLNKA 448
>gnl|CDD|233586 TIGR01820, TrpE-arch, anthranilate synthase component I, archaeal
clade. This model represents an archaeal clade of
anthranilate synthase component I enzymes. This enzyme
is responsible for the first step of tryptophan
biosynthesis from chorismate. The Sulfolobus enzyme has
been reported to be part of a gene cluster for Trp
biosynthesis [Amino acid biosynthesis, Aromatic amino
acid family].
Length = 435
Score = 357 bits (919), Expect = e-122
Identities = 148/280 (52%), Positives = 183/280 (65%), Gaps = 18/280 (6%)
Query: 43 EAYKEAVLQAKEHILAGDIFQIVLSQRFERRTFADPFEIYRALRIVNPSPYMTYLQARGC 102
E ++EAV +AKE+I AGDIFQ+VLS+ +E R DPFE+Y LR +NPSPYM L+
Sbjct: 174 EEFEEAVEEAKEYIFAGDIFQVVLSREYEYRLDGDPFELYYNLREINPSPYMFLLKFGDR 233
Query: 103 ILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVDLG 162
LV SSPE L RV+ R + P+AGT RG TP+ED KELL+DEK+ AEH+MLVDL
Sbjct: 234 YLVGSSPETLVRVEGRTVETNPIAGTRPRGATPEEDERLAKELLSDEKERAEHVMLVDLA 293
Query: 163 RNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGTVSGA 222
RNDV KVS+ GSVKV + M +E YSHV HI STV G L ++DALRA P GT+SGA
Sbjct: 294 RNDVRKVSEPGSVKVPEFMYVEKYSHVQHIESTVIGTLKKDYDAFDALRATFPAGTLSGA 353
Query: 223 PKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDVD 282
PK++AME+IDELE RG Y GG G S+ GD D A+A+RT +D
Sbjct: 354 PKIRAMEIIDELEKEPRGVYGGGVGYFSWNGDADFAIAIRTAE---------------ID 398
Query: 283 KRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIARAID 322
K + +QAGAGIVADS P E +E ENK + +AI
Sbjct: 399 KDK---LRIQAGAGIVADSIPEREFEETENKMKAVLKAIG 435
>gnl|CDD|184152 PRK13571, PRK13571, anthranilate synthase component I; Provisional.
Length = 506
Score = 342 bits (880), Expect = e-115
Identities = 147/296 (49%), Positives = 187/296 (63%), Gaps = 24/296 (8%)
Query: 37 SSSMTSEAYKEAVLQAKEHILAGDIFQIVLSQRFERRTFADPFEIYRALRIVNPSPYMTY 96
+ T E + AV + E I AG+ FQ+V SQRFE T ADP ++YR LR+ NPSPYM
Sbjct: 224 RAQRTVEEFGAAVEKLVEEIRAGEAFQVVPSQRFEMDTTADPLDVYRVLRVTNPSPYMYL 283
Query: 97 LQ------ARGCILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEK 150
L+ +V SSPE L V + T P+AGT RG TP+ED + EKELL D K
Sbjct: 284 LRVPNSDGGTDFSIVGSSPEALVTVTDGRATTHPIAGTRWRGATPEEDALLEKELLADPK 343
Query: 151 QCAEHIMLVDLGRNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTSWDAL 210
+ AEH+MLVDLGRND+G+V + G+V+V +IE YSHVMH+ STVTGEL + T+ DA+
Sbjct: 344 ERAEHLMLVDLGRNDLGRVCRPGTVRVVDFSHIERYSHVMHLVSTVTGELAEGRTALDAV 403
Query: 211 RAALPVGTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTAT 270
A P GT+SGAPKV+AMELI+ELE TRRG Y G G + F GD D A+A+RT +
Sbjct: 404 TACFPAGTLSGAPKVRAMELIEELEPTRRGLYGGVVGYLDFAGDADTAIAIRTALM---- 459
Query: 271 RYDTMYSYKDVDKRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIARAIDLAES 326
R+ A++QAG G+VADSDP+ E E NKAA + RAI AE+
Sbjct: 460 --------------RDGTAYVQAGGGVVADSDPDYEDNEARNKAAAVLRAIAAAET 501
>gnl|CDD|184150 PRK13569, PRK13569, anthranilate synthase component I; Provisional.
Length = 506
Score = 330 bits (848), Expect = e-110
Identities = 145/332 (43%), Positives = 194/332 (58%), Gaps = 23/332 (6%)
Query: 2 NRLENLVARVHDIVPPRLRKGSIKLHTRHFGPKLE--SSSMTSEAYKEAVLQAKEHILAG 59
+E L+ ++ K + E +S+ E + V + KE+I AG
Sbjct: 191 AEIETLIEKLARRKAE---KELLLPADSERTVSFEGVTSNYEKEQFLRDVEKIKEYIKAG 247
Query: 60 DIFQIVLSQRFERRTFADPFEIYRALRIVNPSPYMTYLQARGCILVASSPEILTRVKKRK 119
DIFQ VLSQRFE FE+YR LR+VNPSPYM Y++ +V SSPE L +V R
Sbjct: 248 DIFQAVLSQRFEIPVSVGGFELYRVLRMVNPSPYMFYMKLDDVEIVGSSPERLIQVHNRH 307
Query: 120 ITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVDLGRNDVGKVSKSGSVKVEK 179
+ P+AGT RRG +ED KELL DEK+ AEH MLVDL RND+G+V++ GSV+V
Sbjct: 308 LEIHPIAGTRRRGADAEEDERLAKELLADEKERAEHYMLVDLARNDIGRVAEYGSVEVPV 367
Query: 180 LMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGTVSGAPKVKAMELIDELEVTRR 239
L+ I +SHVMH+ S VTGEL + + DAL +A P GTVSGAPK++AM++++ELE T R
Sbjct: 368 LLEIGKFSHVMHLISKVTGELKEGVHPIDALLSAFPAGTVSGAPKIRAMQILNELEPTAR 427
Query: 240 GPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDVDKRREWIAHLQAGAGIVA 299
G Y+G I F G++D +A+RT+V A++QAGAGIVA
Sbjct: 428 GTYAGAIAYIGFDGNIDSCIAIRTMVVKDGV------------------AYIQAGAGIVA 469
Query: 300 DSDPNDEQKECENKAAGIARAIDLAESSFVDK 331
DS P E +E NKA+ + +AI LAE F
Sbjct: 470 DSVPELEWEETRNKASALLKAIQLAERLFAKG 501
>gnl|CDD|184154 PRK13573, PRK13573, anthranilate synthase component I; Provisional.
Length = 503
Score = 320 bits (822), Expect = e-107
Identities = 141/283 (49%), Positives = 183/283 (64%), Gaps = 18/283 (6%)
Query: 38 SSMTSEAYKEAVLQAKEHILAGDIFQIVLSQRFERRTFADPFEIYRALRIVNPSPYMTYL 97
S+ T E YK AV +AK++I AGDIFQ+V SQR+ + PF +YR+LR NPSP+M +
Sbjct: 226 SNFTHEGYKAAVEKAKDYIRAGDIFQVVPSQRWAQDFRLPPFALYRSLRRTNPSPFMFFF 285
Query: 98 QARGCILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIM 157
G +V +SPEIL R++ ++T RP+AGT RG TP+ED E +LL D+K+ AEH+M
Sbjct: 286 NFGGFQVVGASPEILVRLRDGEVTIRPIAGTRPRGATPEEDRALEADLLADKKELAEHLM 345
Query: 158 LVDLGRNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVG 217
L+DLGRNDVG+V+K G+V+ + IE YSHVMHI S V GEL + + AL A LP G
Sbjct: 346 LLDLGRNDVGRVAKIGTVRPTEKFIIERYSHVMHIVSNVVGELAEGEDALSALLAGLPAG 405
Query: 218 TVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYS 277
TVSGAPKV+AME+IDELE +RG Y GG G + G+MD+ +ALRT V T Y
Sbjct: 406 TVSGAPKVRAMEIIDELEPEKRGVYGGGVGYFAANGEMDMCIALRTAVVKDETLY----- 460
Query: 278 YKDVDKRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIARA 320
+QAG G+V DSDP E +E NKA + RA
Sbjct: 461 -------------IQAGGGVVYDSDPEAEYQETVNKARALRRA 490
>gnl|CDD|215913 pfam00425, Chorismate_bind, chorismate binding enzyme. This family
includes the catalytic regions of the chorismate binding
enzymes anthranilate synthase, isochorismate synthase,
aminodeoxychorismate synthase and para-aminobenzoate
synthase.
Length = 254
Score = 299 bits (767), Expect = e-101
Identities = 126/273 (46%), Positives = 162/273 (59%), Gaps = 23/273 (8%)
Query: 43 EAYKEAVLQAKEHILAGDIFQIVLSQRFERRT--FADPFEIYRALRIVNPSPYMTYLQAR 100
E Y AV +AKE I AGD++++VLS+R E DP +YR LR NP+PY L+
Sbjct: 3 EDYAAAVEKAKEAIRAGDLYKVVLSRRLELPLSSPIDPLALYRRLRARNPAPYAFLLELG 62
Query: 101 GCILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVD 160
+ +SPE L V+ +IT RPLAGT RG+ P+ED ELL EK+ AEH+M+VD
Sbjct: 63 D--FLGASPERLLSVRGGRITTRPLAGTRPRGEDPEEDEALAAELLASEKERAEHLMVVD 120
Query: 161 LGRNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGTVS 220
L RND+G+V K GSVKV +L +E Y +V H+ ST+TG L L+ D L A P G V+
Sbjct: 121 LIRNDLGRVCK-GSVKVPELPEVERYGNVQHLVSTITGRLKPGLSLLDLLAALHPTGAVT 179
Query: 221 GAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKD 280
GAPK +AME+I ELE RG Y+G G + G+ D A+A+RT +
Sbjct: 180 GAPKKRAMEIIAELEPFDRGLYAGAVGWLDPDGNGDFAVAIRTAL--------------- 224
Query: 281 VDKRREWIAHLQAGAGIVADSDPNDEQKECENK 313
+D R A L AGAGIVADSDP E E E K
Sbjct: 225 IDNGR---ARLYAGAGIVADSDPEAEWAETELK 254
>gnl|CDD|237432 PRK13572, PRK13572, anthranilate synthase component I; Provisional.
Length = 435
Score = 284 bits (728), Expect = 2e-93
Identities = 129/283 (45%), Positives = 180/283 (63%), Gaps = 20/283 (7%)
Query: 43 EAYKEAVLQAKEHILAGDIFQIVLSQRFERRTFADPFEIYRALRIVNPSPYMTYLQARGC 102
E + E V +AKE+I +GD+FQ+VLS+ + +T PF++YR LR +NPSPYM +L
Sbjct: 173 EEFVEMVEKAKEYIYSGDVFQVVLSREYRLKTDLSPFQLYRNLREINPSPYM-FLLEFDK 231
Query: 103 ILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVDLG 162
+V +SPE + V+ + P+AGT RGKT +ED + LL+DEK+ AEH+MLVDL
Sbjct: 232 DVVGASPETMASVENNILKINPIAGTAPRGKTEEEDKKLAEALLSDEKERAEHVMLVDLA 291
Query: 163 RNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGTVSGA 222
RNDV KVSKSGSV++E+ ++ YSHV HI S V GEL + T +DA+ AA P GT++GA
Sbjct: 292 RNDVRKVSKSGSVRLERFFDVVKYSHVQHIESEVVGELKEDSTMFDAIEAAFPAGTLTGA 351
Query: 223 PKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDVD 282
PK +AME+IDELE +RR Y G G S +G+ D+A+A+R ++D
Sbjct: 352 PKFRAMEIIDELEKSRRKVYGGAVGYFSNSGNADLAIAIRMA---------------EID 396
Query: 283 KRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIARAIDLAE 325
K + ++AGAGIVADS P E E E K A + +A+ +
Sbjct: 397 K----VCRVRAGAGIVADSVPEKEFYETERKMAAVLKALGVVN 435
>gnl|CDD|130883 TIGR01824, PabB-clade2, aminodeoxychorismate synthase, component I,
clade 2. This clade of sequences is more closely
related to TrpE (anthranilate synthase,
TIGR00564/TIGR01820/TIGR00565) than to the better
characterized group of PabB enzymes
(TIGR00553/TIGR01823). This clade includes one
characterized enzyme from Lactococcus and the conserved
function across the clade is supported by these pieces
of evidence: 1) all genomes with a member in this clade
also have a separate TrpE gene, 2) none of these genomes
contain an aparrent PabB from any of the other PabB
clades, 3) none of these sequences are found in a region
of the genome in association with other Trp biosynthesis
genes, 4) all of these genomes aparrently contain most
if not all of the steps of the folate biosynthetic
pathway (for which PABA is a precursor). Many of the
sequences hit by this model are annotated as TrpE
enzymes, however, we believe that all members of this
clade are, in fact, PabB. The sequences from Bacillus
halodurans and subtilus which score below the trusted
cutoff for this model are also likely to be PabB
enzymes, but are too closely related to TrpE to be
separated at this time.
Length = 355
Score = 273 bits (699), Expect = 4e-90
Identities = 116/277 (41%), Positives = 160/277 (57%), Gaps = 20/277 (7%)
Query: 43 EAYKEAVLQAKEHILAGDIFQIVLSQRFERRTFA--DPFEIYRALRIVNPSPYMTYLQAR 100
AY+ V + K++I AGD+FQ LS+R A DP +++ ALR NP+PY YL+
Sbjct: 97 AAYETGVRRIKDYIRAGDVFQANLSRRLTAPIAADVDPLQLFLALRAPNPAPYAIYLEEP 156
Query: 101 GCILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVD 160
G + ++SPE+ + R + RP+AGT RG T ED ELL +K AEH+M+VD
Sbjct: 157 GVDVASASPELFLAREGRVVQTRPIAGTRPRGATLAEDGALAAELLQHDKDRAEHVMIVD 216
Query: 161 LGRNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGTVS 220
L RND+G+V +G+V+V +L +E YSHV H+ S VTG L + D +RA P G+++
Sbjct: 217 LERNDLGRVCATGTVRVPELCAVESYSHVHHLVSRVTGRLREGAGLADLIRALFPGGSIT 276
Query: 221 GAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKD 280
GAPKV+AME+IDELE RGPY+G G I G+ D+ + +RT+
Sbjct: 277 GAPKVRAMEIIDELEPQPRGPYTGSVGWIDADGNADLNILIRTLEG-------------- 322
Query: 281 VDKRREWIAHLQAGAGIVADSDPNDEQKECENKAAGI 317
H + GAGIVADSDP E E E KA +
Sbjct: 323 ----GGAQLHFRTGAGIVADSDPAGEWDETEAKARAL 355
>gnl|CDD|184155 PRK13574, PRK13574, anthranilate synthase component I; Provisional.
Length = 420
Score = 264 bits (677), Expect = 5e-86
Identities = 131/284 (46%), Positives = 170/284 (59%), Gaps = 20/284 (7%)
Query: 39 SMTSEAYKEAVLQAKEHILAGDIFQIVLSQRFERRTF-ADPFEIYRALRIVNPSPYMTYL 97
S+ Y++ V ++ E+I +G IFQ+VLS RF R F DP IY LR +NPSPYM YL
Sbjct: 154 SLNKNNYEKIVSESLEYIRSGYIFQVVLS-RFYRYLFSGDPLRIYYNLRRINPSPYMFYL 212
Query: 98 QARGCILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIM 157
+ L+ SSPE+L RV+ + P+AGT RG +EDL E EL+N EK AEH+M
Sbjct: 213 KFDERYLIGSSPELLFRVQDNIVETYPIAGTRPRGSDQEEDLKLELELMNSEKDKAEHLM 272
Query: 158 LVDLGRNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVG 217
LVDL RND+GKV G+V+V +LM +E YSHV HI S V G L + D L+A P G
Sbjct: 273 LVDLARNDLGKVCVPGTVRVPELMYVEKYSHVQHIVSKVIGTLKKKYNALDVLKATFPAG 332
Query: 218 TVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYS 277
TVSGAPK AM +I+ LE +RGPY+G G IS G+ + A+A+R T +
Sbjct: 333 TVSGAPKPMAMNIIETLEEYKRGPYAGAVGFISADGNAEFAIAIR-----------TAFL 381
Query: 278 YKDVDKRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIARAI 321
KD + +QAGAGIV DS+P E E E+K + AI
Sbjct: 382 NKD-------LLRIQAGAGIVYDSNPESEYFETEHKLRALKTAI 418
>gnl|CDD|235651 PRK05940, PRK05940, anthranilate synthase component I-like protein;
Validated.
Length = 463
Score = 263 bits (674), Expect = 5e-85
Identities = 125/288 (43%), Positives = 180/288 (62%), Gaps = 15/288 (5%)
Query: 40 MTSEAYKEAVLQAKEHILAGDIFQIVLSQRFERRTFADPFEIYRALRIVNPSPYMTYLQA 99
T + Y+ AV QAK++I AGDIFQ LS RF+ T AD ++IYR L+ +NPSP+ +Y +
Sbjct: 187 TTQQEYEAAVRQAKKYIQAGDIFQANLSLRFQTTTSADSWQIYRRLQQINPSPFASYWRT 246
Query: 100 RGCILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLV 159
+V+ SPE L +++ + RP+AGT RGKTP ED +ELL++ K+ AEHIMLV
Sbjct: 247 PWGDVVSCSPERLVQLQGNQAQTRPIAGTRPRGKTPAEDQQLAEELLSNIKERAEHIMLV 306
Query: 160 DLGRNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGTV 219
DL RND+G+V + GSV+V++L+ IE YSHV+H+ S V G L + + D +RA P GT+
Sbjct: 307 DLERNDLGRVCQWGSVEVDELLTIERYSHVIHLVSNVVGTLQPNRDAIDLIRALFPGGTI 366
Query: 220 SGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVF-PTATRYDTMYSY 278
+G PKV+ ME+I+ELE RR + G G + G++D+ + +RT+++ P + T++
Sbjct: 367 TGCPKVRCMEIIEELEPVRRNLFYGSCGYLDQRGNLDLNILIRTLLYTPLSRGLSTIWG- 425
Query: 279 KDVDKRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIARAIDLAES 326
Q GAGIVADSDP E E KA A++L S
Sbjct: 426 -------------QVGAGIVADSDPEKEWLESLQKAKAQLAALNLVRS 460
>gnl|CDD|237428 PRK13564, PRK13564, anthranilate synthase component I; Provisional.
Length = 520
Score = 255 bits (654), Expect = 3e-81
Identities = 122/304 (40%), Positives = 166/304 (54%), Gaps = 41/304 (13%)
Query: 37 SSSMTSEAYKEAVLQAKEHILAGDIFQIVLSQRFERRTF----ADPFEIYRALRIVNPSP 92
S +++ E + V + KEHI AGDIFQ+V S R F P YR L+ NPSP
Sbjct: 237 SVNISDEEFCAVVRKLKEHIRAGDIFQVVPS-----RRFSLPCPSPLAAYRVLKKSNPSP 291
Query: 93 YMTYLQARGCILVASSPEILTRVK----KRKITNRPLAGTVRRGKTPKEDLVF------E 142
YM Y+Q L +SPE + +K R++ P+AGT RG+ + E
Sbjct: 292 YMFYMQDEDFTLFGASPE--SALKYDASSRQVEIYPIAGTRPRGRRADGSIDRDLDSRIE 349
Query: 143 KELLNDEKQCAEHIMLVDLGRNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLD 202
EL D K+ AEH+MLVDL RND+ ++ + GS V L+ ++ YSHVMH+ S V GEL
Sbjct: 350 LELRTDHKELAEHLMLVDLARNDLARICQPGSRYVADLLKVDRYSHVMHLVSRVVGELRH 409
Query: 203 HLTSWDALRAALPVGTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALR 262
L + A RA + +GT++GAPKV+AM+LI E+E RRG Y G G ++ GD+D
Sbjct: 410 DLDALHAYRACMNMGTLTGAPKVRAMQLIREVEGQRRGSYGGAVGYLTGHGDLDTC---- 465
Query: 263 TIVFPTATRYDTMYSY-KDVDKRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIARAI 321
IV +A + ++ IA +QAGAG+V DSDP E E NKA + RAI
Sbjct: 466 -IVIRSA--------FVEN------GIATVQAGAGVVLDSDPQSEADETRNKAQAVLRAI 510
Query: 322 DLAE 325
A
Sbjct: 511 ATAH 514
>gnl|CDD|233020 TIGR00553, pabB, aminodeoxychorismate synthase, component I,
bacterial clade. Members of this family,
aminodeoxychorismate synthase, component I (PabB), were
designated para-aminobenzoate synthase component I until
it was recognized that PabC, a lyase, completes the
pathway of PABA synthesis. This family is closely
related to anthranilate synthase component I (trpE), and
both act on chorismate. The clade of PabB enzymes
represented by this model includes sequences from
Gram-positive and alpha and gamma Proteobacteria as well
as Chlorobium, Nostoc, Fusobacterium and Arabidopsis. A
closely related clade of fungal PabB enzymes is
identified by TIGR01823, while another bacterial clade
of potential PabB enzymes is more closely related to
TrpE (TIGR01824) [Biosynthesis of cofactors, prosthetic
groups, and carriers, Folic acid].
Length = 328
Score = 248 bits (635), Expect = 8e-81
Identities = 110/278 (39%), Positives = 153/278 (55%), Gaps = 18/278 (6%)
Query: 38 SSMTSEAYKEAVLQAKEHILAGDIFQIVLSQRFERRTFADPFEIYRALRIVNPSPYMTYL 97
S MT Y EA+ Q +++I AGD +Q L+Q+F DP +R LR P+P+ +L
Sbjct: 67 SEMTRAEYGEAIDQLQDYIRAGDCYQANLTQQFHATWDGDPLAAFRKLRRRQPAPFSAFL 126
Query: 98 QARGCILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIM 157
+++ SPE+ + +I RP+ GT+ RG P+ED L K AE++M
Sbjct: 127 DLGDGAILSLSPELFFSIDGSEIETRPIKGTLPRGADPQEDRAQASALAESAKDRAENLM 186
Query: 158 LVDLGRNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVG 217
+VDL RND+G++++ GSVKV +L +E Y V + ST+T L + LT D RA P G
Sbjct: 187 IVDLLRNDLGRIAEVGSVKVPELFVVETYPTVHQLVSTITARLREDLTLSDLFRALFPGG 246
Query: 218 TVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYS 277
+++GAPKV+AME+IDELE RG Y G G +S GDMD +A+RT+
Sbjct: 247 SITGAPKVRAMEIIDELEPQPRGVYCGAIGYLSPEGDMDFNVAIRTLTLDGGR------- 299
Query: 278 YKDVDKRREWIAHLQAGAGIVADSDPNDEQKECENKAA 315
A G GIVADSDP E +EC KAA
Sbjct: 300 -----------AVYGVGGGIVADSDPEAEYRECLLKAA 326
>gnl|CDD|184148 PRK13567, PRK13567, anthranilate synthase component I; Provisional.
Length = 468
Score = 251 bits (643), Expect = 3e-80
Identities = 124/319 (38%), Positives = 179/319 (56%), Gaps = 30/319 (9%)
Query: 2 NRLENLVARVHDIVPPRLRKGSIKLHTRHFGPKLESSSMTSEAYKEAVLQAKEHILAGDI 61
NR+ + + I P + T+ S+++ E + E + KE I GD+
Sbjct: 166 NRVNKSIEDLTKIQPFMPTQ-DFDFKTKEI-----QSNISEERFIEMIQYFKEKITEGDM 219
Query: 62 FQIVLSQRFE-RRTFAD-----PFEIYRALRIVNPSPYMTYLQARGCILVASSPEILTRV 115
FQ+V S+ ++ + F++Y+ L+ NPSPYM YL +V SSPE V
Sbjct: 220 FQVVPSRIYKYAHHASQHLNQLSFQLYQNLKRQNPSPYMYYLNIDQPYIVGSSPESFVSV 279
Query: 116 KKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVDLGRNDVGKVSKSGSV 175
K + +T P+AGT++RG+T + D K+LLND K+C+EH MLVDLGRND+ +VSK G+
Sbjct: 280 KDQIVTTNPIAGTIQRGETTQIDNENMKQLLNDPKECSEHRMLVDLGRNDIHRVSKIGTS 339
Query: 176 KVEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGTVSGAPKVKAMELIDELE 235
K+ KLM IE Y HVMHI S VTG++ +L+ + LP GTVSGAPK++A+E I E
Sbjct: 340 KITKLMVIEKYEHVMHIVSEVTGKINQNLSPMTVIANLLPTGTVSGAPKLRAIERIYEQY 399
Query: 236 VTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDVDKRREWIAHLQAGA 295
+RG YSGG G I+ ++D ALA+RT++ D Y +++AG
Sbjct: 400 PHKRGVYSGGVGYINCNHNLDFALAIRTMMI------DEQY------------INVEAGC 441
Query: 296 GIVADSDPNDEQKECENKA 314
G+V DS P E E + KA
Sbjct: 442 GVVYDSIPEKELNETKLKA 460
>gnl|CDD|236371 PRK09070, PRK09070, hypothetical protein; Validated.
Length = 447
Score = 234 bits (599), Expect = 5e-74
Identities = 113/285 (39%), Positives = 164/285 (57%), Gaps = 23/285 (8%)
Query: 43 EAYKEAVLQAKEHILAGDIFQIVLSQRFERRTFA---DPFEIYRALRIVNPSPYMTYLQA 99
E + + V + ++I AGD+FQ+ LS+ + + FA DP +Y LR NP+P+ A
Sbjct: 183 ERFTDGVERVLDYIRAGDVFQVNLSRAW-QAQFANAVDPAALYARLRAANPAPFSGLFVA 241
Query: 100 RGCILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLV 159
G +V+SSPE L V+ + RP+AGT R +D +EL+ K+ AEH+ML+
Sbjct: 242 AGRAIVSSSPERLVSVQGGVVQTRPIAGTRPRFAG-DDDAALIRELVGHPKERAEHVMLI 300
Query: 160 DLGRNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGTV 219
DL RND+G++ GSV+V++LM +E Y+HV HI S V G L D +T + +RA P GT+
Sbjct: 301 DLERNDLGRICAPGSVEVDELMTVESYAHVHHIVSNVRGRLRDGVTPGEVIRAVFPGGTI 360
Query: 220 SGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYK 279
+G PKV+ M++I ELE T RG Y+G FG ++ GDMD+ + +RT
Sbjct: 361 TGCPKVRCMQIIAELEQTPRGAYTGSFGYLNRDGDMDLNILIRTAE-------------- 406
Query: 280 DVDKRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIARAIDLA 324
V + + GAGIV DSDP E E KA G+ RA++ A
Sbjct: 407 -VQGNQ---VRFRTGAGIVVDSDPERELDETRAKARGLLRALEQA 447
>gnl|CDD|129656 TIGR00565, trpE_proteo, anthranilate synthase component I,
proteobacterial subset. This enzyme resembles some
other chorismate-binding enzymes, including
para-aminobenzoate synthase (pabB) and isochorismate
synthase. There is a fairly deep split between two sets,
seen in the pattern of gaps as well as in amino acid
sequence differences. This group includes proteobacteria
such as E. coli and Helicobacter pylori but also the
gram-positive organism Corynebacterium glutamicum. The
second group includes eukaryotes, archaea, and most
other bacterial lineages; sequences from the second
group may resemble pabB more closely than other trpE
from this group [Amino acid biosynthesis, Aromatic amino
acid family].
Length = 498
Score = 218 bits (556), Expect = 4e-67
Identities = 112/293 (38%), Positives = 152/293 (51%), Gaps = 27/293 (9%)
Query: 37 SSSMTSEAYKEAVLQAKEHILAGDIFQIVLSQRFERRTFADPFEIYRALRIVNPSPYMTY 96
+ + + V ++ I AG+IFQ+V S+RF P Y L+ NPSPYM Y
Sbjct: 220 ECNQSDSEFGGVVRSLQKAIRAGEIFQVVPSRRFSLPC-PSPLAAYYVLKKSNPSPYMFY 278
Query: 97 LQARGCILVASSPEILTR--VKKRKITNRPLAGTVRRGK------TPKEDLVFEKELLND 148
+Q IL +SPE + R+I P+AGT RG+ D E +L D
Sbjct: 279 MQDNDFILFGASPESALKYDALSRQIEIYPIAGTRPRGRDADGNIDRDLDSRIELDLRTD 338
Query: 149 EKQCAEHIMLVDLGRNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTSWD 208
K+ AEH+MLVDL RND+ +V GS V L ++ YS+VMH+ S V GEL L +
Sbjct: 339 HKELAEHLMLVDLARNDLARVCTPGSRYVADLTKVDRYSYVMHLVSRVVGELRHDLDALH 398
Query: 209 ALRAALPVGTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPT 268
A RA + +GT+SGAPK++AM+LI + E RRG Y G G ++ GD+D + +R+
Sbjct: 399 AYRACMNMGTLSGAPKIRAMQLIYQAEGQRRGSYGGAVGYLTSHGDLDTCIVIRSAFVEN 458
Query: 269 ATRYDTMYSYKDVDKRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIARAI 321
IA +QAGAGIV DS P E E NKA + RAI
Sbjct: 459 G------------------IATVQAGAGIVLDSVPQSEADETRNKARAVLRAI 493
>gnl|CDD|236035 PRK07508, PRK07508, aminodeoxychorismate synthase; Provisional.
Length = 378
Score = 199 bits (507), Expect = 4e-61
Identities = 97/276 (35%), Positives = 134/276 (48%), Gaps = 18/276 (6%)
Query: 40 MTSEAYKEAVLQAKEHILAGDIFQIVLSQRFERRTFADPFEIYRALRIVNPSPYMTYLQA 99
Y + + HI AGD +Q L+ + R DP ++ AL P Y +
Sbjct: 109 WDFADYAQRFERLHRHIRAGDCYQANLTFPLDARWGGDPLALFWALAARQPVGYGALVDL 168
Query: 100 RGCILVASSPEILTRVK-KRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIML 158
G ++++ SPE+ RV + I P+ GT RG TP ED LLNDEK AE+ M+
Sbjct: 169 GGPVILSRSPELFFRVDGEGWIETHPMKGTAPRGATPAEDARLRAALLNDEKNQAENRMI 228
Query: 159 VDLGRNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGT 218
VDL RND+ ++S+ GS+ V +L +IE Y V + S V LL L D A P G+
Sbjct: 229 VDLLRNDISRISEVGSLDVPELFDIETYPTVHQMVSRVRARLLPGLGLADIFAALFPCGS 288
Query: 219 VSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSY 278
++GAPK++AME++ ELE R Y G G I+ G M +A+RT+ R
Sbjct: 289 ITGAPKIRAMEILRELEPGPRDLYCGAIGWIAPDGRMRFNVAIRTLSLFPGGR------- 341
Query: 279 KDVDKRREWIAHLQAGAGIVADSDPNDEQKECENKA 314
A G GIV DS E +EC KA
Sbjct: 342 ----------AVFNVGGGIVFDSTAEAEYEECLLKA 367
>gnl|CDD|185362 PRK15465, pabB, aminodeoxychorismate synthase subunit I;
Provisional.
Length = 453
Score = 194 bits (494), Expect = 2e-58
Identities = 107/285 (37%), Positives = 161/285 (56%), Gaps = 18/285 (6%)
Query: 38 SSMTSEAYKEAVLQAKEHILAGDIFQIVLSQRFERRTFADPFEIYRALRIVNPSPYMTYL 97
S+MT E Y E Q +E++ +GD +Q+ L+QRF D ++ + L N +P+ +L
Sbjct: 186 SNMTREQYGEKFRQVQEYLHSGDCYQVNLAQRFHATYSGDEWQAFLQLNQANRAPFSAFL 245
Query: 98 QARGCILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIM 157
+ +++ SPE +I RP+ GT+ R P+ED ++L N K AE++M
Sbjct: 246 RLEQGAILSLSPERFILCDNSEIQTRPIKGTLPRLPDPQEDSKQAEKLANSAKDRAENLM 305
Query: 158 LVDLGRNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVG 217
+VDL RND+G+V+ +GSVKV +L +E + V H+ ST+T L + L + D LRAA P G
Sbjct: 306 IVDLMRNDIGRVAVAGSVKVPELFVVEPFPAVHHLVSTITARLPEQLHASDLLRAAFPGG 365
Query: 218 TVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYS 277
+++GAPKV+AME+IDELE RR + G G +SF G+MD ++ +RT+ TA S
Sbjct: 366 SITGAPKVRAMEIIDELEPQRRNAWCGSIGYLSFCGNMDTSITIRTL---TAINGQIYCS 422
Query: 278 YKDVDKRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIARAID 322
AG GIVADS E +E +K I R ++
Sbjct: 423 ---------------AGGGIVADSQEEAEYQETFDKVNRILRQLE 452
>gnl|CDD|130874 TIGR01815, TrpE-clade3, anthranilate synthase, alpha
proteobacterial clade. This model represents a small
clade of anthranilate synthases from alpha
proteobacteria and Nostoc (a cyanobacterium). This
enzyme is the first step in the pathway for the
biosynthesis of tryprophan from chorismate [Amino acid
biosynthesis, Aromatic amino acid family].
Length = 717
Score = 185 bits (471), Expect = 4e-53
Identities = 101/283 (35%), Positives = 142/283 (50%), Gaps = 19/283 (6%)
Query: 45 YKEAVLQAKEHILAGDIFQIVLSQRFERRTFADPFEIYRALRIVNPSPYMTYLQ-ARGCI 103
Y V AK GD+F++V Q F P ++R L+ +NPSPY ++ RG
Sbjct: 236 YARLVESAKAAFRRGDLFEVVPGQTFAEPCEDAPSSVFRRLKAINPSPYEFFVNLGRGEY 295
Query: 104 LVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVDLGR 163
LV +SPE+ RV R++ P++GT+ RG D LLN K AE M D+ R
Sbjct: 296 LVGASPEMFVRVAGRRVETCPISGTIARGADAIGDAAQILRLLNSAKDEAELTMCTDVDR 355
Query: 164 NDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGTVSGAP 223
ND +V + GSVKV IE YS ++H V G L + + DA + TV+GAP
Sbjct: 356 NDKSRVCEPGSVKVIGRRQIELYSRLIHTVDHVEGRLRSGMDALDAFLSHSWAVTVTGAP 415
Query: 224 KVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDVDK 283
K AM+ I++ E + R Y G FG + F G M+ L LRTI +
Sbjct: 416 KRWAMQFIEDTEQSPRRWYGGAFGRLGFNGGMNTGLTLRTI------------------R 457
Query: 284 RREWIAHLQAGAGIVADSDPNDEQKECENKAAGIARAIDLAES 326
+ IA ++AGA ++ DSDP+ E+ E KAA AI A++
Sbjct: 458 MADGIAEVRAGATLLYDSDPDAEEAETRLKAAAFRDAIRRAKA 500
>gnl|CDD|237429 PRK13566, PRK13566, anthranilate synthase; Provisional.
Length = 720
Score = 183 bits (468), Expect = 1e-52
Identities = 103/283 (36%), Positives = 152/283 (53%), Gaps = 21/283 (7%)
Query: 45 YKEAVLQAKEHILAGDIFQIVLSQRFERRTFADPFEIYRALRIVNPSPYMTYLQ-ARGCI 103
Y V +AKE GD+F++V Q F P EI+R L+ +NPSPY ++ G
Sbjct: 246 YAALVEKAKESFRRGDLFEVVPGQTFYEPCERSPSEIFRRLKEINPSPYGFFINLGDGEY 305
Query: 104 LVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVDLGR 163
LV +SPE+ RV+ R++ P++GT++RG D ++LLN +K +E M D+ R
Sbjct: 306 LVGASPEMFVRVEGRRVETCPISGTIKRGADAIGDAEQIRKLLNSKKDESELTMCTDVDR 365
Query: 164 NDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTSWDA-LRAALPVGTVSGA 222
ND +V + GSVKV IE YS ++H V G L + DA L A V TV+GA
Sbjct: 366 NDKSRVCEPGSVKVIGRRQIEMYSRLIHTVDHVEGRLRPGFDALDAFLTHAWAV-TVTGA 424
Query: 223 PKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDVD 282
PK+ AM+ I++ E + R Y G G + F GDM+ L LRTI R
Sbjct: 425 PKLWAMQFIEDHERSPRRWYGGAVGMVGFDGDMNTGLTLRTI------RI---------- 468
Query: 283 KRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIARAIDLAE 325
++ +A ++ GA ++ DSDP E+ E E KA+ + +A+ A+
Sbjct: 469 --KDGVAEVRVGATLLFDSDPEAEEAETELKASALLQALRGAK 509
>gnl|CDD|102361 PRK06404, PRK06404, anthranilate synthase component I; Reviewed.
Length = 351
Score = 174 bits (443), Expect = 7e-52
Identities = 102/285 (35%), Positives = 144/285 (50%), Gaps = 31/285 (10%)
Query: 31 FGPKLESSSMTSEAYKEAVLQAKEHILAGDIFQIVLSQRFERRTFADPFEIYRALRIVNP 90
F + + + + E I AG++ Q+V+S+ FE D E +
Sbjct: 93 FKTVKLKGNYNDISLSLKIKELIELIRAGEVLQVVISREFEANI--DFKEKLSEFINNDR 150
Query: 91 SPYMTYLQARGCILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEK 150
S Y+ Y + +V SSPE + V I P+AGT +D + ELLN EK
Sbjct: 151 SRYVFYYRFGKYRVVGSSPENVFTVNGNIINVDPIAGTY-------DDKILSNELLNSEK 203
Query: 151 QCAEHIMLVDLGRNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTSW-DA 209
EH ML+DL RND+ K + G++ V+K+M IE +S V H+ S VT + + S+ D
Sbjct: 204 DKLEHRMLLDLARNDLSKFADIGTLNVDKVMKIEEFSSVKHLVSQVTAKFSN--ASYRDI 261
Query: 210 LRAALPVGTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTA 269
L + P GTVSG+PK +A+E+I++ E T RGPY G GI G D+AL +RT
Sbjct: 262 LASMFPAGTVSGSPKERAIEIINKYEETPRGPYGGAI-GIISKGYTDMALVIRTA----- 315
Query: 270 TRYDTMYSYKDVDKRREWIAHLQAGAGIVADSDPNDEQKECENKA 314
YS+ + + R AGAGIV DSDP DE E +KA
Sbjct: 316 ------YSHGNGFRVR-------AGAGIVKDSDPEDEVNEIYSKA 347
>gnl|CDD|215481 PLN02889, PLN02889, oxo-acid-lyase/anthranilate synthase.
Length = 918
Score = 167 bits (425), Expect = 2e-46
Identities = 96/272 (35%), Positives = 153/272 (56%), Gaps = 24/272 (8%)
Query: 43 EAYKEAVLQAKEHILAGDIFQIVLSQRFERRTF-ADPFEIYRALRIVNPSPYMTYL---Q 98
E Y + V + ++I G+ +++ L+ + +R D +Y LR NP+PY +L
Sbjct: 644 EQYIKDVQKCLKYIKDGESYELCLTTQMRKRIGEIDSLGLYLHLREKNPAPYAAWLNFSN 703
Query: 99 ARGCILVASSPEILTRVKKRKITN-RPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIM 157
CI +SSPE ++ + + +P+ GT+ RG TP+ED + +L EK AE++M
Sbjct: 704 ENLCI-CSSSPERFLKLDRNGMLEAKPIKGTIARGSTPEEDEQLKLQLQYSEKDQAENLM 762
Query: 158 LVDLGRNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVG 217
+VDL RND+G+V + GSV V LM++E Y+ V + ST+ G+ +++ D +RAA P G
Sbjct: 763 IVDLLRNDLGRVCEPGSVHVPNLMDVESYTTVHTMVSTIRGKKRSNMSPVDCVRAAFPGG 822
Query: 218 TVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYS 277
+++GAPK+++MEL+D LE + RG YSG G S+ D+ + +RT+V
Sbjct: 823 SMTGAPKLRSMELLDSLESSSRGIYSGSIGFFSYNQTFDLNIVIRTVVI----------- 871
Query: 278 YKDVDKRREWIAHLQAGAGIVADSDPNDEQKE 309
E A + AG IVA S+P DE +E
Sbjct: 872 -------HEGEASIGAGGAIVALSNPEDEYEE 896
>gnl|CDD|235634 PRK05877, PRK05877, aminodeoxychorismate synthase component I;
Provisional.
Length = 405
Score = 152 bits (387), Expect = 4e-43
Identities = 88/276 (31%), Positives = 136/276 (49%), Gaps = 26/276 (9%)
Query: 43 EAYKEAVLQAKEHILAGDIFQIVLSQRFERRTFADPFEIY-RALRIVNPSPYMTYLQARG 101
A+++ VL E I AG+++Q + +F P + + + P+ YL
Sbjct: 142 AAHRDGVLACLEAIAAGEVYQACVCTQFTGTVTGSPLDFFADGVARTAPA-RAAYLAGDW 200
Query: 102 CILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVDL 161
+ + SPE+ R + +T+ P+ GT+ P L K AE+IM+VDL
Sbjct: 201 GAVASLSPELFLRRRGSVVTSSPIKGTLPLDADPSA-------LRASAKDVAENIMIVDL 253
Query: 162 GRNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGTVSG 221
RND+G+V+++G+V V +L+ + V H+ STV+ ++ D L D L A P +V+G
Sbjct: 254 VRNDLGRVARTGTVTVPELLVVRPAPGVWHLVSTVSAQVPDELPMSDLLDATFPPASVTG 313
Query: 222 APKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDV 281
PK++A ELI + E RRG Y G G S ++ +A+RT+ F
Sbjct: 314 TPKLRARELISQWEPVRRGIYCGTVGLASPVAGCELNVAIRTVEFDADGN---------- 363
Query: 282 DKRREWIAHLQAGAGIVADSDPNDEQKECENKAAGI 317
A L G GI ADSDP+ E +EC +KAA I
Sbjct: 364 -------AVLGVGGGITADSDPDAEWQECLHKAAPI 392
>gnl|CDD|132533 TIGR03494, salicyl_syn, salicylate synthase. Members of this
protein family are salicylate synthases, bifunctional
enzymes that make salicylate, in two steps, from
chorismate. Members are homologous to anthranilate
synthase component I from Trp biosynthesis. Members
typically are found in gene regions associated with
siderophore or other secondary metabolite biosynthesis.
Length = 425
Score = 141 bits (356), Expect = 1e-38
Identities = 95/278 (34%), Positives = 129/278 (46%), Gaps = 21/278 (7%)
Query: 43 EAYKEAVLQAKEHILAGDIFQIVLSQRFERRTFADPFEIYRALRIVNPSPYMTYLQARGC 102
AY+ V +A I AG +++LS+ D R N +P ++L G
Sbjct: 162 SAYRARVARAVAEIAAGRYHKVILSRAVPLPFAIDFPATLLLGRRHN-TPVRSFLLRLGG 220
Query: 103 I-LVASSPEILTRVKKR-KITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVD 160
I + SPE++ V+ K+ PLAGT G P+ D ELL+D K+ EH + V
Sbjct: 221 IEALGFSPELVMSVRADGKVVTEPLAGTRALGGGPEHDKQLRDELLSDSKEIVEHAISVK 280
Query: 161 LGRNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGTVS 220
++ +V + G+V VE M + V H+ STV+G+L +WDA P T S
Sbjct: 281 EAIEELEQVCEPGTVVVEDFMTVRERGSVQHLGSTVSGQLAPSKDAWDAFEVLFPAITAS 340
Query: 221 GAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKD 280
G PK A+E I LE T RG YSG + G +D AL LR Y+
Sbjct: 341 GIPKAAALEAIMRLEKTPRGLYSGAVLLLDADGTLDAALVLRAA-------------YQ- 386
Query: 281 VDKRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIA 318
D R W+ QAGAGI+A S P E E K A IA
Sbjct: 387 -DSGRTWL---QAGAGIIAQSTPERELTETCEKLASIA 420
>gnl|CDD|233588 TIGR01823, PabB-fungal, aminodeoxychorismate synthase, fungal
clade. This model represents the fungal clade of a
para-aminobenzoate synthesis enzyme,
aminodeoxychorismate synthase, which acts on chorismate
in a pathway that yields PABA, a precursor of folate.
Length = 742
Score = 144 bits (365), Expect = 2e-38
Identities = 85/327 (25%), Positives = 153/327 (46%), Gaps = 45/327 (13%)
Query: 12 HDIVPPRLRKGSIKLHTRH--FGPKLESSSMT---SEAYKEAVLQAKEHILAGDIFQIVL 66
++ +RK +IK + P+ +T E Y +A ++++ AGD +++ L
Sbjct: 435 GELRDSFVRKKNIKQSLSWPFYLPEEIDFVITFPDKEDYAKAFKACQDYLHAGDSYEMCL 494
Query: 67 SQRFERRTF-------ADPFEIYRALRIVNPSPYMTYLQARGCILVASSPEILTRVKKR- 118
+ + T + +EIY+ LR NP+P+ + + + I +++SPE V
Sbjct: 495 TTQ----TKVVPPAVISPDWEIYQRLRQRNPAPFSGFFRLKHIIFLSTSPEKFLEVGMDT 550
Query: 119 KITNRPLAGTVRRGKTPKEDLVFEK--ELLNDEKQCAEHIMLVDLGRNDVGKVSKSGSVK 176
RP+ GTV++G + EK +L K+ E++M++DL RND+ ++ V
Sbjct: 551 HAKLRPIKGTVKKG----PQMNLEKARRILKTPKEMGENLMILDLIRNDLYELVPKNDVH 606
Query: 177 VEKLMNIEHYSHVMHISSTVTGELLDHLT------SWDALRAALPVGTVSGAPKVKAMEL 230
VE+LM++E ++ V + S V L + D L+ +LP G+++GAPK ++++L
Sbjct: 607 VEELMSVEEHATVYQLVSVVKAHGLTSASKKTRYSGIDVLKHSLPPGSMTGAPKKRSVQL 666
Query: 231 IDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDVDKRREWIAH 290
+ ++E RG YSG G G+ D ++ +R +SY R
Sbjct: 667 LQDVEGGARGIYSGVTGYWDVNGNGDFSVNIR-----------CAFSYNGGTSWR----- 710
Query: 291 LQAGAGIVADSDPNDEQKECENKAAGI 317
+ AG + S P E +E NK
Sbjct: 711 IGAGGAVTVLSTPEGELEEMYNKLESN 737
>gnl|CDD|233014 TIGR00543, isochor_syn, isochorismate synthases. This enzyme
interconverts chorismate and isochorismate. In E. coli,
different loci encode isochorismate synthases for the
pathways of menaquinone biosynthesis and enterobactin
biosynthesis (via salicilate) and fail to complement
each other. Among isochorismate synthases, the
N-terminal domain is poorly conserved [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 351
Score = 129 bits (326), Expect = 9e-35
Identities = 88/325 (27%), Positives = 144/325 (44%), Gaps = 32/325 (9%)
Query: 1 MNRLENLVARVHDIVPPRLRKGSIKLHTRHFGPKLESSSMTSEAYKEAVLQAKEHILAGD 60
L A I P R + T P A++ AV +A E+I G
Sbjct: 55 DLLLYAKFAVSSGIRPLRALPEQMTTLTTGEDP-------DKAAWRTAVEEALENIRQGP 107
Query: 61 IFQIVLSQRFERRTFADPFEIY---RALRIVNPSPYMTYLQ-ARGCILVASSPEILTRVK 116
+ ++VL+ R FAD + LR P+ Y+ L+ +G + + ++PE L +
Sbjct: 108 LDKVVLA-RALTLKFADDIDPIAVLANLRQQYPNAYIFLLEPPQGGVFLGATPERLLSRE 166
Query: 117 KRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVDLGRNDVGKVSKSGSVK 176
K ++ LAGT R P+ED + LL D+K EH ++V+ R + + S+
Sbjct: 167 KGELLTEALAGTAPRSADPEEDRKLGELLLKDDKNLREHRLVVEYIRRRLQPICT--SLD 224
Query: 177 VEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGTVSGAPKVKAMELIDELEV 236
V + + ++V H+ + ++ L D + D L+ P V G P+ +A++ I E E
Sbjct: 225 VSETPELLKLANVQHLYTPISARLKDGDSLLDLLKQLHPTPAVGGLPREEALDFIREHEP 284
Query: 237 TRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDVDKRREWIAHLQAGAG 296
RG Y+ G + G+ + A+ +R+ + D + L AGAG
Sbjct: 285 FDRGLYAAPLGWLDGEGNGEFAVGIRSALV--------------EDGQ----VRLYAGAG 326
Query: 297 IVADSDPNDEQKECENKAAGIARAI 321
IVADSDP E +E E K + RA+
Sbjct: 327 IVADSDPESEWEETELKLQTMLRAL 351
>gnl|CDD|102546 PRK06772, PRK06772, salicylate synthase Irp9; Reviewed.
Length = 434
Score = 127 bits (321), Expect = 1e-33
Identities = 94/292 (32%), Positives = 137/292 (46%), Gaps = 21/292 (7%)
Query: 28 TRHFGPKLESSSMTSEAYKEAVLQAKEHILAGDIFQIVLSQRFERRTFAD-PFEIYRALR 86
T P +++ EAYK+ V +A I G+ ++++S+ + D P + +
Sbjct: 158 TTQNAPLAVDTALNGEAYKQQVARAVAEIRRGEYVKVIVSRAIPLPSRIDMPATLLYGRQ 217
Query: 87 IVNPSPYMTYLQARGCILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELL 146
P + Q G + SPE++ V K+ PLAGT R P+ + E ELL
Sbjct: 218 ANTPVRSFMFRQ-EGREALGFSPELVMSVTGNKVVTEPLAGTRDRMGNPEHNKAKEAELL 276
Query: 147 NDEKQCAEHIMLVDLGRNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTS 206
+D K+ EHI+ V ++ V + GSV VE LM++ V H+ S V+G+L ++ +
Sbjct: 277 HDSKEVLEHILSVKEAIAELEAVCQPGSVVVEDLMSVRQRGSVQHLGSGVSGQLAENKDA 336
Query: 207 WDALRAALPVGTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVF 266
WDA P T SG PK A+ I ++E T R YSG + T D AL LR++
Sbjct: 337 WDAFTVLFPSITASGIPKNAALNAIMQIEKTPRELYSGAILLLDDT-RFDAALVLRSVF- 394
Query: 267 PTATRYDTMYSYKDVDKRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIA 318
D +R WI QAGAGI+A S P E E K A IA
Sbjct: 395 --------------QDSQRCWI---QAGAGIIAQSTPERELTETREKLASIA 429
>gnl|CDD|224091 COG1169, MenF, Isochorismate synthase [Coenzyme metabolism /
Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 423
Score = 127 bits (320), Expect = 3e-33
Identities = 85/308 (27%), Positives = 130/308 (42%), Gaps = 38/308 (12%)
Query: 25 KLHTRHFGPKLESSSMTSEAYKEAVLQAKEHILAGDIFQIVLSQRFERRTFADPFEIY-- 82
L LE + + + V QA I G++ ++VL++ + TF P +
Sbjct: 139 TLQVLELLITLEQHTPDKADWLQLVEQALALIAQGELDKVVLARALDL-TFDAPIDAAAL 197
Query: 83 -RALRIVNPSPY--MTYLQARGCILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDL 139
LR NP+ Y + L G + +SPE L R + ++ LAG+ RG P ED
Sbjct: 198 LARLRAQNPNCYHFLVALGDGGA-FLGASPERLVRRRGGQLVTEALAGSAPRGADPVEDA 256
Query: 140 VFEKELLNDEKQCAEHIMLVD-----LGRNDVGKVSKSGSVKVEKLMNIEHYSHVMHISS 194
LL D K EH ++VD L ++ ++ KL V H+ +
Sbjct: 257 QLGNWLLADAKNLHEHQLVVDDIRQRL-EPLCEELDVPSPPQLIKL------RKVQHLRT 309
Query: 195 TVTGELLDHLTSWDALRAAL-PVGTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTG 253
++ +L D + L AL P V G P+ A++ I E E RG Y+G G G
Sbjct: 310 PISAQLKDPSVTALDLAKALHPTPAVGGLPREAALQFIREHEPFDRGWYAGPVGWCDSEG 369
Query: 254 DMDIALALRTIVFPTATRYDTMYSYKDVDKRREWIAHLQAGAGIVADSDPNDEQKECENK 313
+ + +A+R S + L AGAGIVA SDP +E +E + K
Sbjct: 370 NGEFVVAIR--------------SALISGNQ----VRLFAGAGIVAGSDPEEEWRETDLK 411
Query: 314 AAGIARAI 321
A + RA+
Sbjct: 412 LATMLRAL 419
>gnl|CDD|235932 PRK07093, PRK07093, para-aminobenzoate synthase component I;
Validated.
Length = 323
Score = 124 bits (314), Expect = 3e-33
Identities = 86/292 (29%), Positives = 139/292 (47%), Gaps = 53/292 (18%)
Query: 35 LESSSMTSEAYKEAVLQAKEHILAGDIFQIVLSQRFERRTFADPFEIYRALRIVNPSPYM 94
L+ ++ E Y++ +E I AG+ + + L+ T EI++A + + Y
Sbjct: 66 LQKEPISFEEYQQGFELVQEEIQAGNSYLLNLTYPTPIETNLSLEEIFQASK----AKYK 121
Query: 95 TYLQARGCILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVF---EKELLNDEKQ 151
+ + V SPE R++ KI+ P+ GT+ D E++LLNDEK+
Sbjct: 122 LLFKDQ---FVCFSPEPFVRIEDNKISTYPMKGTI--------DASLPNAEEKLLNDEKE 170
Query: 152 CAEHIMLVDLGRNDVGKVSKSGSVKVEKLMNIE----HYSHVMHISSTVTGELLDHLTSW 207
AEH +VDL RND+ V+K +V+V + I+ + ++ SS ++G L + +W
Sbjct: 171 FAEHATIVDLLRNDLSMVAK--NVRVTRFRYIDKIKTNKGEILQTSSEISGTLPE---NW 225
Query: 208 -----DALRAALPVGTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTG-DMDIALAL 261
D L LP G+++GAPK K +E+I++ E RG Y+G FG F G +D A+ +
Sbjct: 226 QENIGDILAKLLPAGSITGAPKEKTVEIIEQAEGYERGFYTGVFG--YFDGESLDSAVMI 283
Query: 262 RTIVFPTATRYDTMYSYKDVDKRREWIAHLQAGAGIVADSDPNDEQKECENK 313
R I + + +K +G GI DSD DE E K
Sbjct: 284 RFI-----EQENDGLYFK-------------SGGGITIDSDLKDEYNELIQK 317
>gnl|CDD|169151 PRK07912, PRK07912, salicylate synthase MbtI; Reviewed.
Length = 449
Score = 116 bits (292), Expect = 2e-29
Identities = 85/276 (30%), Positives = 125/276 (45%), Gaps = 21/276 (7%)
Query: 45 YKEAVLQAKEHILAGDIFQIVLSQRFERRTFADPFEIYRALRIVNPSPYMTYLQARGCIL 104
Y++ V A I AG +++LS+ E D YR R N +P ++L G I
Sbjct: 186 YRDRVAVAVAEIAAGRYHKVILSRCVEVPFAVDFPATYRLGRRHN-TPVRSFLLRLGGIR 244
Query: 105 VAS-SPEILTRVKK-RKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVDLG 162
SPE++T V+ + PLAGT G+ D + +L ++ K+ EH + V
Sbjct: 245 ALGYSPELVTAVRADGVVITEPLAGTRAFGRGAAIDRLARDDLESNSKEIVEHAISVRSS 304
Query: 163 RNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGTVSGA 222
++ ++++ GS V M + V H+ STV G L DAL A P T SG
Sbjct: 305 LAEITEIAEPGSAAVIDFMTVRERGSVQHLGSTVRGRLDASSDRMDALEALFPAVTASGI 364
Query: 223 PKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDVD 282
PK ++ I L+ RG YSG +S G +D AL LR Y
Sbjct: 365 PKAAGVDAIFRLDEAPRGLYSGAVVMLSADGGLDAALTLRAA-------YQV-------- 409
Query: 283 KRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIA 318
R W L+AGAGI+ +S+P E +E K + +A
Sbjct: 410 GGRTW---LRAGAGIIEESEPEREFEETCEKLSTLA 442
>gnl|CDD|235920 PRK07054, PRK07054, salicylate biosynthesis isochorismate synthase;
Validated.
Length = 475
Score = 99.1 bits (247), Expect = 4e-23
Identities = 76/290 (26%), Positives = 126/290 (43%), Gaps = 24/290 (8%)
Query: 35 LESSSMTSEAYKEAVLQAKEHILAGDIFQIVLSQRFERRTFADPFEIY---RALRIVNPS 91
L +S++ + ++ V +A + I G ++VL+ R + +A P I R LR+ +P
Sbjct: 187 LRASALQAREWQHEVRRAVDAIRGGAFGKVVLA-RDVLQQYARPVAIGPLLRRLRLRDPH 245
Query: 92 PYMTYLQARGCILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQ 151
++ + + ++PE L RV + LAGT+ RG P ED L+ K
Sbjct: 246 AHLFAFRRGNACFLGATPERLVRVAAGDLHTHALAGTIARGADPAEDARLGAALMASAKD 305
Query: 152 CAEHIMLVDLGRNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALR 211
EH ++VD R S ++ + ++ + H+S+ + L T +
Sbjct: 306 RLEHALVVDAIRA--ALAPLSRALDIPDQPSLHRLPRLQHLSTPIRATLAPDATLLQVVA 363
Query: 212 AALPVGTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATR 271
A P V G P+ A++ I E RG Y+ G + G+ D A+ALR+ + T
Sbjct: 364 ALHPTPAVGGHPRAAALDYIRAHEGFDRGWYAAPIGWLDAHGNGDFAVALRSALI-TGGA 422
Query: 272 YDTMYSYKDVDKRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIARAI 321
L AG GIVADS+P E +E K +G+ A+
Sbjct: 423 -----------------CRLFAGCGIVADSEPASEYRETCLKLSGMREAL 455
>gnl|CDD|235886 PRK06923, PRK06923, isochorismate synthase DhbC; Validated.
Length = 399
Score = 91.7 bits (228), Expect = 8e-21
Identities = 81/295 (27%), Positives = 129/295 (43%), Gaps = 31/295 (10%)
Query: 43 EAYKEAVLQAKEHILAGDIFQIVLSQRFERRTFADPFEIYRALRIV---NPSPYMTYL-- 97
E Y V Q I GD+ +IVLS+ + ++ + + LR + N Y +
Sbjct: 122 EVYMNGVKQGIAKIQDGDLKKIVLSRSLDV-KSSEKIDKQKLLRELAEHNKHGYTFAVNL 180
Query: 98 ----QARGCILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCA 153
L+ +SPE+L ++ + PLAG+ R P ED +ELL+ K
Sbjct: 181 PKDENENSKTLIGASPELLVSRHGMQVISNPLAGSRPRSDDPVEDKRRAEELLSSPKDLH 240
Query: 154 EHIMLVDLGRNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAA 213
EH ++V+ + ++ V + ++ H + H+S+ V GEL D TS L A
Sbjct: 241 EHAVVVEAVAAALRPYCH--TLHVPEKPSVIHTEAMWHLSTEVKGELKDPNTSSLELAIA 298
Query: 214 L-PVGTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRY 272
L P V G P +A E I ++E R ++G G GD + + +R
Sbjct: 299 LHPTPAVCGTPTEEAREAIQQIEPFDREFFTGMLGWSDLNGDGEWIVTIRC--------- 349
Query: 273 DTMYSYKDVDKRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIARAIDLAESS 327
+V++ L AGAG+VA+S P DE E K + +A+ L +SS
Sbjct: 350 ------AEVEENT---LRLYAGAGVVAESKPEDELAETSAKFQTMLKAMGLNDSS 395
>gnl|CDD|178383 PLN02786, PLN02786, isochorismate synthase.
Length = 533
Score = 86.4 bits (214), Expect = 9e-19
Identities = 81/313 (25%), Positives = 128/313 (40%), Gaps = 33/313 (10%)
Query: 25 KLHTRHFGPKLESSSM--TSEAYKEAVLQAKEHILAG--DIFQIVL--SQRFERRTFADP 78
KL G + S + + A+ AV +A + I + ++VL S R T DP
Sbjct: 240 KLRKESLGVSVLSKNHVPSKGAWHLAVNKALQIIKRKSSPLKKVVLARSSRIITDTDIDP 299
Query: 79 FEIYRALRIVNPSPYMTYLQ-ARGCILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKE 137
L++ + Y LQ + ++PE L K + + LA T RG +
Sbjct: 300 IAWLACLQVEGQNAYQFCLQPPDAPAFIGNTPEQLFHRKGLGVCSEALAATRPRGGSSAR 359
Query: 138 DLVFEKELLNDEKQCAEHIMLVDLGRNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVT 197
DL E +LL K E ++ + R + + V VE I + V H+ + +
Sbjct: 360 DLQIELDLLTSPKDDLEFSIVRENIREKLEAICDR--VVVEPHKAIRKLARVQHLYAQLA 417
Query: 198 GELLDHLTSWDALRAALPVGTVSGAPKVKAMELIDELEVTRRGPYSGG---FGGISFTGD 254
G L +D L A P V G P +A LI E E RG Y+G FGG G+
Sbjct: 418 GRLRSEDDEFDILAALHPTPAVCGHPTEEARLLIAETESFDRGMYAGPVGWFGG----GE 473
Query: 255 MDIALALRTIVFPTATRYDTMYSYKDVDKRREWIAHLQAGAGIVADSDPNDEQKECENKA 314
+ A+ +R+ + V+K A + AG GIV S+P+ E E E K
Sbjct: 474 SEFAVGIRSAL---------------VEKGLG--ALIYAGTGIVEGSNPSSEWNELELKI 516
Query: 315 AGIARAIDLAESS 327
+ ++++ +
Sbjct: 517 SQFTKSLEHESAL 529
>gnl|CDD|184974 PRK15012, PRK15012, menaquinone-specific isochorismate synthase;
Provisional.
Length = 431
Score = 56.4 bits (136), Expect = 8e-09
Identities = 72/276 (26%), Positives = 118/276 (42%), Gaps = 34/276 (12%)
Query: 49 VLQAKEHILAGDIFQIVLSQRFERRTFADPFE---IYRALRIVNPSPYMTYL--QARGCI 103
+ A + I G++ ++VL+ R FA P + A R +N + Y Y+ A
Sbjct: 176 IELATKTIAEGELDKVVLA-RATDLHFASPVNAAAMMAASRRLNLNCYHFYMAFDAENAF 234
Query: 104 LVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVDLGR 163
L SSPE L R + + + LAGTV K+ + L+ D+K E++++V+
Sbjct: 235 L-GSSPERLWRRRDKALRTEALAGTVANHPDDKQAQQLGEWLMADDKNQRENMLVVE--- 290
Query: 164 NDVGKVSKSGSVKVEKL-MNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGTVSGA 222
D+ + ++ + ++ L + V H+ + L + L P V+G
Sbjct: 291 -DICQRLQADTQTLDVLPPQVLRLRKVQHLRRCIWTSL-NKADDVICLHQLQPTAAVAGL 348
Query: 223 PKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTI-VFPTATRYDTMYSYKDV 281
P+ A + I E R Y+G G +S + ++LR+ V R
Sbjct: 349 PRDLARQFIARHEPFTREWYAGSAGYLS-LQQSEFCVSLRSAKVSGNVVR---------- 397
Query: 282 DKRREWIAHLQAGAGIVADSDPNDEQKECENKAAGI 317
L AGAGIV SDP E +E +NKAAG+
Sbjct: 398 ---------LYAGAGIVRGSDPEQEWQEIDNKAAGL 424
>gnl|CDD|184977 PRK15016, PRK15016, isochorismate synthase EntC; Provisional.
Length = 391
Score = 49.9 bits (119), Expect = 8e-07
Identities = 73/302 (24%), Positives = 123/302 (40%), Gaps = 39/302 (12%)
Query: 20 RKGSIKLHTRHFGPKLESSSMTSE--AYKEAVLQAKEHILAGDIFQIVLSQRFERRTFAD 77
++ S + TR + E ++ V +A + ++VLS+ + T A
Sbjct: 102 KQRSARRFTRSQSLNVVERQAIPEQTTFEAMVARAAALTATPQVDKVVLSRLIDITTDAA 161
Query: 78 PFEIYRALRIV--NPSPYMTYLQ-ARGCILVASSPEILTRVKKRKITNRPLAGTVRRGKT 134
R++ NP Y ++ A G +L+ +SPE+L R + ++ PLAG+ RR
Sbjct: 162 IDSGALLERLIAQNPVSYNFHVPLADGGVLLGASPELLLRKDGERFSSLPLAGSARR--- 218
Query: 135 PKEDLVFEKE----LLNDEKQCAEHIMLVDLGRNDVGKVSKSGSVKVEKLMNIEHYSHVM 190
+ D V ++E LL EK EH ++ + + + +S + V + +
Sbjct: 219 -QPDEVLDREAGNRLLASEKDRHEHELVTQAMKEVLRE--RSSELHVPSSPQLITTPTLW 275
Query: 191 HISSTVTGELLDHLTSWDALRAAL---PVGTVSGAPKVKAMELIDELEVTRRGPYSGGFG 247
H+++ G+ +AL A P +SG P A ++I ELE R + G G
Sbjct: 276 HLATPFEGKA---NAQENALTLACLLHPTPALSGFPHQAAKQVIAELEPFDRELFGGIVG 332
Query: 248 GISFTGDMDIALALRTIVFPTATRYDTMYSYKDVDKRREWIAHLQAGAGIVADSDPNDEQ 307
G+ + + +R K RE L AGAGIV S P E
Sbjct: 333 WCDSEGNGEWVVTIRCA------------------KLRENQVRLFAGAGIVPASSPLGEW 374
Query: 308 KE 309
+E
Sbjct: 375 RE 376
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 29.9 bits (68), Expect = 1.8
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 11/45 (24%)
Query: 194 STVT-GELLDHLTSWDALRAALPVGTVSGAPKVKAMELIDELEVT 237
++ T ELL A RAA+P K + ++D L T
Sbjct: 520 ASATEAELLAFARDHIAERAAVP----------KHVRILDALPKT 554
>gnl|CDD|236572 PRK09566, nirA, ferredoxin-nitrite reductase; Reviewed.
Length = 513
Score = 30.0 bits (68), Expect = 1.9
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 14/44 (31%)
Query: 97 LQARGCILVASSPEILTRVKK-------------RKITNRPLAG 127
LQ RG IL+ PEIL R+K R IT P+AG
Sbjct: 106 LQLRG-ILLEDLPEILNRLKAVGLTSVQSGMDNVRNITGSPVAG 148
>gnl|CDD|187837 cd09706, Csf2_U, CRISPR/Cas system-associated RAMP superfamily
protein Csf2. CRISPR (Clustered Regularly Interspaced
Short Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
RAMP superfamily protein; Contains several motifs
similar to Cas7 family.
Length = 328
Score = 29.5 bits (66), Expect = 2.1
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 209 ALRAALPVGTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISF 251
AL L G V+G P K M + E R PY G FGG
Sbjct: 88 ALYNVLQCGAVTGNPDGKDMT-LGEYRQARDDPYFGLFGGGPK 129
>gnl|CDD|234112 TIGR03115, cas_csf2, CRISPR type AFERR-associated protein Csf2.
Members of this family show up near CRISPR repeats in
Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp.
EbN1, and Rhodoferax ferrireducens DSM 15236. In the
latter two species, the CRISPR/cas locus is found on a
plasmid. This family is one of several characteristic of
a type of CRISPR-associated (cas) gene cluster we
designate Aferr after A. ferrooxidans, where it is both
chromosomal and the only type of cas gene cluster found.
The gene is designated csf2 (CRISPR/cas Subtype as in A.
ferrooxidans protein 2), as it lies second closest to
the repeats [Mobile and extrachromosomal element
functions, Other].
Length = 344
Score = 29.5 bits (66), Expect = 2.2
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 209 ALRAALPVGTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISF 251
AL L G V+G P K M + E R PY G FGG
Sbjct: 88 ALYNVLQCGAVTGNPDGKDMT-LGEYRQARDDPYFGLFGGGPK 129
>gnl|CDD|178588 PLN03014, PLN03014, carbonic anhydrase.
Length = 347
Score = 28.9 bits (64), Expect = 3.7
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 37 SSSMTSEAYKEAVLQAKEHILAGDIFQIVLSQRFERRTFADPFEIYRALRIVNPSPYMTY 96
S M +EAY EA+ K+ ++ + + V + + E+ T A + +P
Sbjct: 75 SEEMGTEAYDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTSSDKKAFDP------ 128
Query: 97 LQARGCILVASSPEILTRVKKRKI-TNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEH 155
V + + + KK K TN L G + +G++PK +VF +D + C H
Sbjct: 129 --------VETIKQGFIKFKKEKYETNPALYGELAKGQSPKY-MVFA---CSDSRVCPSH 176
Query: 156 IM 157
++
Sbjct: 177 VL 178
>gnl|CDD|143505 cd06836, PLPDE_III_ODC_DapDC_like_1, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzymes, Uncharacterized Proteins with
similarity to Ornithine and Diaminopimelate
Decarboxylases. This subfamily contains uncharacterized
proteins with similarity to ornithine decarboxylase
(ODC) and diaminopimelate decarboxylase (DapDC). ODC and
DapDC are fold type III PLP-dependent enzymes that
contain an N-terminal PLP-binding TIM-barrel domain and
a C-terminal beta-sandwich domain, similar to bacterial
alanine racemases. They exist as homodimers with active
sites that lie at the interface between the TIM barrel
domain of one subunit and the beta-sandwich domain of
the other subunit. ODC participates in the formation of
putrescine by catalyzing the decarboxylation of
ornithine, the first step in polyamine biosynthesis.
DapDC participates in the last step of lysine
biosynthesis, the conversion of
meso-2,6-diaminoheptanedioate to L-lysine. Proteins in
this subfamily may function as PLP-dependent
decarboxylases. Homodimer formation and the presence of
the PLP cofactor may be required for catalytic activity.
Length = 379
Score = 28.9 bits (65), Expect = 4.5
Identities = 31/126 (24%), Positives = 40/126 (31%), Gaps = 16/126 (12%)
Query: 206 SWDALRAALPVGTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISF---TGDMDIAL--- 259
+ LR AL +G + +E ID L + G+ G I
Sbjct: 82 TRAELREALELGVAINIDNFQELERIDAL--VAEFKEASSRIGLRVNPQVGAGKIGALST 139
Query: 260 ALRTIVFPTATRYDTMYSYKDVDKRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIAR 319
A T F A D RR W+ L G + E A GI R
Sbjct: 140 ATATSKFGVALEDGARDEIIDAFARRPWLNGLHVHVG--------SQGCELSLLAEGIRR 191
Query: 320 AIDLAE 325
+DLAE
Sbjct: 192 VVDLAE 197
>gnl|CDD|240288 PTZ00143, PTZ00143, deoxyuridine 5'-triphosphate
nucleotidohydrolase; Provisional.
Length = 155
Score = 27.8 bits (62), Expect = 4.8
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Query: 228 MELIDELEVTRRGPYSGGFG 247
EL+DEL+ T RG GGFG
Sbjct: 133 FELVDELDETTRG--EGGFG 150
>gnl|CDD|218620 pfam05511, ATP-synt_F6, Mitochondrial ATP synthase coupling factor
6. Coupling factor 6 (F6) is a component of
mitochondrial ATP synthase which is required for the
interactions of the catalytic and proton-translocating
segments.
Length = 99
Score = 27.0 bits (60), Expect = 5.9
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 281 VDKRREWIAHLQAGAGIVADSDPNDEQKECE---NKAA---GIARAIDLAE 325
VDK RE+ ++ G + D+ P + +KE + K A G D+ +
Sbjct: 42 VDKIREYKQKSKSSGGKLVDAGP-EYEKELKEELEKLAKQYGGGSGDDMTK 91
>gnl|CDD|227411 COG5079, SAC3, Nuclear protein export factor [Intracellular
trafficking and secretion / Cell division and chromosome
partitioning].
Length = 646
Score = 28.4 bits (63), Expect = 6.9
Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 5/99 (5%)
Query: 44 AYKEAVLQAKEHILAGDIFQIVLSQRFERRTFADPFEIYRALRIVN--PSPYMTYLQARG 101
A ++ + A ++I D+ I+ FE + + F Y L I
Sbjct: 336 AMEKEIESAHKNIPFVDLSGILD---FEEKGEGEEFCKYYGLEIRIEDSVKLPIVFMLSA 392
Query: 102 CILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLV 140
CI IL + + ++ R A + G+ D +
Sbjct: 393 CIDYKKPTAILCTLLESRLQARRFADGINGGQDEDRDRI 431
>gnl|CDD|215123 PLN02192, PLN02192, 3-ketoacyl-CoA synthase.
Length = 511
Score = 28.0 bits (62), Expect = 7.7
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 37 SSSMTSEAYKEAVLQAKEHILAGD-IFQIVLSQRFERRTFADPFEIYRALRIVNPS---- 91
++S +S Y+ A +AK I GD +QI F+ + +++ALR VNP+
Sbjct: 438 NTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNS-----AVWKALRTVNPAKEKN 492
Query: 92 PYM 94
P+M
Sbjct: 493 PWM 495
>gnl|CDD|182997 PRK11148, PRK11148, cyclic 3',5'-adenosine monophosphate
phosphodiesterase; Provisional.
Length = 275
Score = 27.6 bits (62), Expect = 8.1
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 42 SEAYKEAVLQAKEHILAGDIFQIVL--SQRF 70
A ++A + +H+L G+ +QI+L SQ F
Sbjct: 102 YSALQDAGISPAKHVLIGEHWQILLLDSQVF 132
>gnl|CDD|188209 TIGR02337, HpaR, homoprotocatechuate degradation operon regulator,
HpaR. This Helix-Turn-Helix transcriptional regulator
is a member of the MarR family (pfam01047) and is found
in association with operons for the degradation of
4-hydroxyphenylacetic acid via homoprotocatechuate.
Length = 118
Score = 26.6 bits (59), Expect = 8.6
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 82 YRALRIVNPSPYM--TYLQARGCILVASSPEILTRVKKRKITNR 123
+R LRI+ M T L + CIL S IL R+++ + R
Sbjct: 31 WRILRILAEQGSMEFTQLANQACILRPSLTGILARLERDGLVTR 74
>gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit
alpha.
Length = 362
Score = 27.8 bits (62), Expect = 9.1
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 33 PKLESSSMTSEAYKEAVLQAKEHILA-GDIFQIVLSQRFERRTFADPFEIYR 83
P L+ M A K+A AKEH L+ G I + + R+ + +DP YR
Sbjct: 223 PGLKVDGMDVLAVKQACKFAKEHALSNGPIVLEMDTYRYHGHSMSDPGSTYR 274
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.384
Gapped
Lambda K H
0.267 0.0657 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,437,276
Number of extensions: 1728102
Number of successful extensions: 1562
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1481
Number of HSP's successfully gapped: 67
Length of query: 331
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 234
Effective length of database: 6,635,264
Effective search space: 1552651776
Effective search space used: 1552651776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.7 bits)