Citrus Sinensis ID: 020075

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-
Protein Sequence
MSNLDESRPIRPEYPVQYTDPRIPLTNLSAVRTRMESLQQFLLESINSNTLISQHQMNVVSSEIASAIHQVIVNGSALLACSPQQPTLQQLPPDPKNPEIGSEHDIESDCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYKNCGESRWKCSCGTSFSRKDKLFGHVALFEGHMPEVEVDEKMKHHDQDVVVVGDDDDDDEMVDDIDDDGLSSFEGLLDLDGFGSFDDFCLQDVLGDGGFS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccEEccccccccccccHHHHHHHHccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccEEEccccHHHHHcccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccHHHHHHcHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccEEcccccEEEEcccccccHHHHHHHHHHcccccccccHccccccccccccccEEEEccccccccccccccccccccccHHHHcEEccccccccEcccccccEEEEEcHHHHHHHHccccEEEEcccccccccccHHHHHHHHccccccHcccccccccccccEEEccccccccccccccccccccccccccccccccHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
msnldesrpirpeypvqytdpripltnlSAVRTRMESLQQFLLESINSNTLISQHQMNVVSSEIASAIHQVIVNGsallacspqqptlqqlppdpknpeigsehdiesdceiVEIDAVELLAEHIHFCdicgkgfkrdaNLRMHMRahgdefktpqalakpekgsvsgrktrfscpydgcnrnkkhkkFRALKSVICvknhfkrshcpkmyscdkchkksFSVVSDLRSHykncgesrwkcscgtsfsrkdklFGHValfeghmpevevdekmkhhdqdvvvvgddddddemvddidddglssfeglldldgfgsfddfclqdvlgdggfs
Flexible Loop (DISEMBL)
msnldesrpirpeypvqytdpripLTNLSAVRTRMESLQQFLLESINSNTLISQHQMNVVSSEIASAIHQVIVNGSALLACSPQQPTLQQLPPDPKNPEIGSEHDIESDCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHgdefktpqalakpekgsvsgrktrfscpydgcnrnkkhkkfraLKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYkncgesrwkcscgtSFSRKDKLFGHVALFEGHMPEVEVDEKMKHHDQDVVVVGDDDDDDEMVDDIDDDGLSSFEGLLDLDGFGSFDDFCLQDVLGDGGFS
Low Complexity Region (SEG)
MSNLDESRPIRPEYPVQYTDPRIPLTNLSAVRTRMESLQQFLLESINSNTLISQHQMNVVSSEIASAIHQVIVNGSALLACSpqqptlqqlppDPKNPEIGSEHDIESDCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYKNCGESRWKCSCGTSFSRKDKLFGHVALFEGHMPEVEVDEKMKHHdqdvvvvgddddddemvddidddGLSSFEglldldgfgsfddfCLQDVLGDGGFS
Disordered region (IsUnstruct)
*********************RIPLTNLSAVRTRMESLQQFLLESINSNTLISQHQMNVVSSEIASAIHQVIVNGSALLAC**************************SDCEIVEIDAVELLAEHIHFCDICGKGFKRDANLR******************************FSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYKNCGESRWKCSCGTSFSRKDKLFGHVALFEGHMPEV************VVVV****************GLSSFEGLLDLDGFGSFDDFCLQDVLG*****
Disordered Region (DISOPRED)
****************************************************************************************************************VEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPE**SVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYKNCGESRWKCSCGTSFSRKDKLFGHVALFEGHMPEVEV*************************************************FCLQDVLGDG***
Disordered Region (DISEMBL)
MSNLDESRPIRPEYPVQYTDPRIPLTNLSAVRTRMESLQQFLLESINSNTLISQHQMNVVSSEIASAIHQVIVNGSALLACSPQQPTLQQLPPDPKNPEIGSEHDIESDCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQA************KTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYKNCGESRWKCSCGTSFSRKDKLFGHVALFEGHMPEVEVDEKMKHHDQDVVVVGDDDDDDEMVDDIDDDGLSSFEGLLDLDGFGSFDDFCLQDVLGDGGFS
Disordered Region (DISPRO)
**********RPEYPVQYTDPRIPLTNLSAVRTRMES*Q*F************************************************************SEHDIESDCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQA**********GRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYKNCGESRWKCSCGTSFSRKDKLFGHVALFEGHMPE***********************************SSFEGLLDLDGFGSFDDFCLQDVLGDGGF*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNLDESRPIRPEYPVQYTDPRIPLTNLSAVRTRMESLQQFLLESINSNTLISQHQMNVVSSEIASAIHQVIVNGSALLACSPQQPTLQQLPPDPKNPEIGSEHDIESDCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYKNCGESRWKCSCGTSFSRKDKLFGHVALFEGHMPEVEVDEKMKHHDQDVVVVGDDDDDDEMVDDIDDDGLSSFEGLLDLDGFGSFDDFCLQDVLGDGGFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	331	2.2.26 [Sep-21-2011]
Q9C8N5	499	Protein SENSITIVE TO PROT	yes	no	0.803	0.533	0.394	2e-63
Q943I6	522	Zinc finger protein STOP1	no	no	0.483	0.306	0.635	6e-62
Q2QX40	465	Zinc finger protein STAR3	no	no	0.471	0.335	0.577	8e-51
Q9FFH3	466	Zinc finger protein NUTCR	no	no	0.474	0.336	0.341	7e-24
Q9ZWA6	506	Zinc finger protein MAGPI	no	no	0.425	0.278	0.370	2e-23
Q700D2	503	Zinc finger protein JACKD	no	no	0.429	0.282	0.377	5e-23
Q8VWG3	303	Protein TRANSPARENT TESTA	no	no	0.432	0.471	0.373	3e-17
O43313	823	ATM interactor OS=Homo sa	yes	no	0.350	0.140	0.284	2e-07
Q5RAX9	1117	PR domain zinc finger pro	yes	no	0.386	0.114	0.318	4e-07
Q0VAW7	879	Zinc finger protein 112 O	no	no	0.401	0.151	0.303	4e-07

>sp|Q9C8N5|STOP1_ARATH Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1

 Score =  243 bits (619), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 132/335 (39%), Positives = 190/335 (56%), Gaps = 69/335 (20%)

Query: 2   SNLDESRPIRPEYPVQYTDPRIPLTNLSAVRTRMESLQQFLLESINSNTLI-------SQ 54
           +N+D  + +R     Q  DPR  L+NLS +  ++  LQ  +   +     +       + 
Sbjct: 63  ANVDFLQGVR----AQAWDPRTMLSNLSFMEQKIHQLQDLVHLLVGRGGQLQGRQDELAA 118

Query: 55  HQMNVVSSEIASAIHQVIVNGSALL-------ACSPQ----QPTLQQLP----------- 92
            Q  ++++++ S I Q+I    +LL       + +P     QP     P           
Sbjct: 119 QQQQLITTDLTSIIIQLISTAGSLLPSVKHNMSTAPGPFTGQPGSAVFPYVREANNVASQ 178

Query: 93  --------------PDP-----------KNPEIGSEHDIE-------SDCEIVEIDAVEL 120
                         P P           +  E+  E D+E          EI++++  E+
Sbjct: 179 SQNNNNCGAREFDLPKPVLVDEREGHVVEEHEMKDEDDVEEGENLPPGSYEILQLEKEEI 238

Query: 121 LAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRK----TRFSCP 176
           LA H HFC ICGKGFKRDANLRMHMR HGDE+KT  ALAKP K SV G +     R+SCP
Sbjct: 239 LAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGSEPMLIKRYSCP 298

Query: 177 YDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYKNCGE 236
           + GC RNK+HKKF+ LK+++CVKNH+KR+HC K ++C +CH K FSV++DL++H K+CG+
Sbjct: 299 FLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKFSVIADLKTHEKHCGK 358

Query: 237 SRWKCSCGTSFSRKDKLFGHVALFEGHMPEVEVDE 271
           ++W CSCGT+FSRKDKLFGH+ALF+GH P + ++E
Sbjct: 359 NKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEE 393

Probable transcription factor. Plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q943I6|STOP1_ORYSJ Zinc finger protein STOP1 homolog OS=Oryza sativa subsp. japonica GN=Os01g0871200 PE=2 SV=1

 Score =  238 bits (606), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 103/162 (63%), Positives = 131/162 (80%), Gaps = 2/162 (1%)

Query: 112 IVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSV--SGR 169
           +++++  E+LA H HFC ICGKGFKRDANLRMHMR HGDE+KT  ALAKP K S   S  
Sbjct: 268 VLQLEKEEILAPHTHFCLICGKGFKRDANLRMHMRGHGDEYKTAAALAKPSKDSSLESAP 327

Query: 170 KTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRS 229
            TR+SCPY GC RNK+HKKF+ LK+++CVKNH+KRSHC K Y+C +C+ K FSV++DL++
Sbjct: 328 VTRYSCPYVGCKRNKEHKKFQPLKTILCVKNHYKRSHCDKSYTCSRCNTKKFSVIADLKT 387

Query: 230 HYKNCGESRWKCSCGTSFSRKDKLFGHVALFEGHMPEVEVDE 271
           H K+CG  +W CSCGT+FSRKDKLFGHVALF+GH P + +D+
Sbjct: 388 HEKHCGRDKWLCSCGTTFSRKDKLFGHVALFQGHTPALPMDD 429

Probable transcription factor that may be involved in aluminum tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QX40|ART1_ORYSJ Zinc finger protein STAR3 OS=Oryza sativa subsp. japonica GN=STAR3 PE=2 SV=1

 Score =  201 bits (510), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 93/161 (57%), Positives = 119/161 (73%), Gaps = 5/161 (3%)

Query: 112 IVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKT 171
           +++++  E+LA H HFC ICGKGFKRDANLRMHMR HGDE+K+  ALAKP        + 
Sbjct: 215 VLQLEEDEILAPHTHFCGICGKGFKRDANLRMHMRGHGDEYKSAAALAKPPPPPEGEEQP 274

Query: 172 -----RFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSD 226
                R+SCP+ GC RN+ H  F+ LK+++CVKNH+KRSHC K + C +C  K FSV++D
Sbjct: 275 PQPERRYSCPHAGCKRNRMHASFQPLKTILCVKNHYKRSHCEKRHVCGRCGAKRFSVMAD 334

Query: 227 LRSHYKNCGESRWKCSCGTSFSRKDKLFGHVALFEGHMPEV 267
           L++H K+CG  RW CSCGTSFSRKDKLF HVALF+GH P +
Sbjct: 335 LKTHEKHCGRDRWLCSCGTSFSRKDKLFAHVALFQGHAPAL 375

Transcriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FFH3|NUC_ARATH Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1

 Score =  111 bits (278), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 10/167 (5%)

Query: 109 DCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSG 168
           + E++ +    L+A +   C++CGKGF+RD NL++H R H   +K  Q  +K        
Sbjct: 49  EAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSK------EV 102

Query: 169 RKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLR 228
           RK  + CP   C     H   RAL  +  +K HF R H  K ++C+KC K+ ++V SD +
Sbjct: 103 RKRVYVCPEKTC---VHHHSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKR-YAVQSDWK 158

Query: 229 SHYKNCGESRWKCSCGTSFSRKDKLFGHVALFEGHMPEVEVDEKMKH 275
           +H K CG   ++C CGT FSR+D    H A  +    E      + H
Sbjct: 159 AHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETAKINAVSH 205

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWA6|MGP_ARATH Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1

 Score =  110 bits (275), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 81/151 (53%), Gaps = 10/151 (6%)

Query: 109 DCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSG 168
           + E++ +    L+A +   C+ICGKGF+RD NL++H R H   +K  Q  +K        
Sbjct: 53  EAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEV------ 106

Query: 169 RKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLR 228
           RK  + CP   C     H   RAL  +  +K HF R H  K + C+KC K+ ++V SD +
Sbjct: 107 RKRVYVCPEKSC---VHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKR-YAVQSDWK 162

Query: 229 SHYKNCGESRWKCSCGTSFSRKDKLFGHVAL 259
           +H K CG   ++C CGT FSR+D    H A 
Sbjct: 163 AHSKTCGTREYRCDCGTIFSRRDSFITHRAF 193

Probable transcription factor that regulates tissue boundaries and asymmetric cell division. Might be involved in the sequestration of 'SHORT-ROOT' to the nucleus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D2|JKD_ARATH Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1

 Score =  108 bits (270), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 80/151 (52%), Gaps = 9/151 (5%)

Query: 109 DCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSG 168
           D +++ +    L+A +   C+IC KGF+RD NL++H R H      P  L +  K  V  
Sbjct: 65  DADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGH----NLPWKLKQRSKQEVIK 120

Query: 169 RKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLR 228
           +K  + CP   C     H   RAL  +  +K H+ R H  K + C+KC KK ++V SD +
Sbjct: 121 KKV-YICPIKTC---VHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKK-YAVQSDWK 175

Query: 229 SHYKNCGESRWKCSCGTSFSRKDKLFGHVAL 259
           +H K CG   +KC CGT FSRKD    H A 
Sbjct: 176 AHAKTCGTREYKCDCGTLFSRKDSFITHRAF 206

Probable transcription factor that regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action. Required for radial patterning and stem cell maintenance. Counteracted by 'MAGPIE' (MGP).

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWG3|TT1_ARATH Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 79/150 (52%), Gaps = 7/150 (4%)

Query: 119 ELLAEHIHF-CDICGKGFKRDANLRMHMRAHGDEF-KTPQALAKPEKGSVSGRKTRFSCP 176
           ++L    HF C +C K F R  NL+MHM  HG ++ K P++L   +  ++ G      C 
Sbjct: 137 QILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAMLGIPC--YCC 194

Query: 177 YDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYKNCGE 236
            +GC  +  H + + LK    ++ H+KR H  K +SC  C  K  +V  D R+H KNCG+
Sbjct: 195 VEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLC-GKLLAVKGDWRTHEKNCGK 253

Query: 237 SRWKCSCGTSFSRKDKLFGHVALF-EGHMP 265
            RW C CG+ F  K  L  HV  F  GH P
Sbjct: 254 -RWVCVCGSDFKHKRSLKDHVKAFGSGHGP 282

May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat.

Arabidopsis thaliana (taxid: 3702)

>sp|O43313|ATMIN_HUMAN ATM interactor OS=Homo sapiens GN=ATMIN PE=1 SV=2

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 14/130 (10%)

Query: 131 CGKGFKRDANLRMHM-RAHGDEFKTPQALAKP--EKGSVSGRKTRFSCPYDGCNRNKKHK 187
           CGK       L MH+ ++H    +    +  P   K   +G K  + CP +GC R  +  
Sbjct: 91  CGKILPNSPALNMHLVKSH----RLQDGIVNPTIRKDLKTGPK-FYCCPIEGCPRGPE-- 143

Query: 188 KFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYKNCGESRWKCSCGTSF 247
             R       VK HF + H  K + C KC   S+    DL+ H ++CG++ ++C+CG  +
Sbjct: 144 --RPFSQFSLVKQHFMKMHAEKKHKCSKC-SNSYGTEWDLKRHAEDCGKT-FRCTCGCPY 199

Query: 248 SRKDKLFGHV 257
           + +  L  H+
Sbjct: 200 ASRTALQSHI 209

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Homo sapiens (taxid: 9606)

>sp|Q5RAX9|PRD10_PONAB PR domain zinc finger protein 10 OS=Pongo abelii GN=PRDM10 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 66/154 (42%), Gaps = 26/154 (16%)

Query: 128 CDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEK----------GSVSGRKTRFSCPY 177
           CD+C KGF   A+L  HM+ H D+ KT   +  PE            ++      F+CP 
Sbjct: 532 CDLCNKGFISSASLESHMKLHSDQ-KTYSCIFCPESFDRLDLLKDHVAIHINDGYFTCP- 589

Query: 178 DGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSH-YKNCGE 236
             C +             I VK H +  H  K+Y C +C  K+F     LR H  ++   
Sbjct: 590 -TCKKR--------FPDFIQVKKHVRSFHSEKIYQCTEC-DKAFCRPDKLRLHMLRHSDR 639

Query: 237 SRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEV 269
             + CS CG  F RKDKL  H+     H PE E 
Sbjct: 640 KDFLCSTCGKQFKRKDKLREHMQRM--HNPEREA 671

May be involved in transcriptional regulation.

Pongo abelii (taxid: 9601)

>sp|Q0VAW7|ZN112_MOUSE Zinc finger protein 112 OS=Mus musculus GN=Znf112 PE=2 SV=2

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 67/155 (43%), Gaps = 22/155 (14%)

Query: 122 AEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCN 181
            E  H C++CGKGF + A L+ H+R H           KP K  V G+   FS       
Sbjct: 687 GERPHICEVCGKGFSQRAYLQGHLRVH--------TRVKPYKCEVCGKG--FSQGSRLEA 736

Query: 182 RNKKHKKFRALKSVICVKNHFKRSHCP---------KMYSCDKCHKKSFSVVSDLRSHYK 232
             + H   +  K   C K   + S            + Y CD+C  K FS  S L++H++
Sbjct: 737 HQRVHTGRKPFKCETCTKGFSESSRLQAHQRIHEEGRPYKCDQC-GKGFSGYSSLQAHHR 795

Query: 233 -NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMP 265
            + GE  +KC  CG  FS++  L  H  +  G  P
Sbjct: 796 VHTGEKPYKCEVCGKGFSQRSNLQAHQRVHTGEKP 830

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
224096167	358	predicted protein [Populus trichocarpa]	0.969	0.896	0.607	1e-110
297742862	383	unnamed protein product [Vitis vinifera]	0.960	0.830	0.579	1e-103
255584201	365	TRANSPARENT TESTA 1 protein, putative [R	0.912	0.827	0.548	1e-102
225467372	393	PREDICTED: protein SENSITIVE TO PROTON R	0.963	0.811	0.527	1e-99
365222896	373	Hop-interacting protein THI038 [Solanum	0.915	0.812	0.567	4e-98
449451615	376	PREDICTED: protein SENSITIVE TO PROTON R	0.939	0.827	0.526	7e-96
356538148	364	PREDICTED: protein SENSITIVE TO PROTON R	0.903	0.821	0.534	1e-92
356567692	338	PREDICTED: protein SENSITIVE TO PROTON R	0.930	0.911	0.535	6e-92
357463325	333	Protein SENSITIVE TO PROTON RHIZOTOXICIT	0.897	0.891	0.548	1e-86
356528459	318	PREDICTED: zinc finger protein STOP1 hom	0.812	0.845	0.561	5e-85

>gi|224096167|ref|XP_002310559.1| predicted protein [Populus trichocarpa] gi|222853462|gb|EEE91009.1| predicted protein [Populus trichocarpa]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/349 (60%), Positives = 259/349 (74%), Gaps = 28/349 (8%)

Query: 1   MSNLDES--RPIRPEYPVQYTDPRIPLTNLSAVRTRMESLQQFLLESINSNTLISQHQMN 58
           MSN  ES   P     P+  TDPR+PL NLSAVRTRM+SLQQFL ES+N+NTLI + QM+
Sbjct: 1   MSNPGESTRNPTGFSVPISNTDPRVPLLNLSAVRTRMDSLQQFLSESVNNNTLIGKDQMD 60

Query: 59  VVSSEIASAIHQVIVNGSALLAC--SPQQPTLQQLPPDP---KNPEIGSEHDIESDCEIV 113
           +VSSEI+SAIH++IVN +ALL+C  S  QP   Q P D    K  ++    + E D E+V
Sbjct: 61  MVSSEISSAIHEIIVNAAALLSCNSSSSQPFTPQPPVDSTAIKKAQVLKVENKEEDSEVV 120

Query: 114 EIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVS-----G 168
           E+DAVELLAEH+HFC+ICGKGFKRDANLRMHMRAHG++FKT +ALAKP+KG+ +      
Sbjct: 121 ELDAVELLAEHVHFCEICGKGFKRDANLRMHMRAHGNQFKTLEALAKPDKGNETISASFA 180

Query: 169 RKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLR 228
            KT+FSCP++GCNRNKKH KF+ LKSVICV+NHFKRSHCPKMYSC++C+KKSFSVV+DL+
Sbjct: 181 GKTKFSCPFEGCNRNKKHGKFKPLKSVICVRNHFKRSHCPKMYSCNRCNKKSFSVVTDLK 240

Query: 229 SHYKNCGESRWKCSCGTSFSRKDKLFGHVALFEGHMPEVEVDEKMKHHDQDVVVVGDDD- 287
           SH K+CGESRWKCSCGTSFSRKDKLFGH+ALFEGHMP V  +E+     ++V V G  D 
Sbjct: 241 SHLKHCGESRWKCSCGTSFSRKDKLFGHMALFEGHMPAVAGEEE-DSKAKEVGVGGAVDM 299

Query: 288 ----------DDDEMVDDIDDDGLSSFEGLLDLDGFGSFDDFCLQDVLG 326
                       D +  D +D+    FEGL  LDGF S + + LQDVLG
Sbjct: 300 EEDEEEESVVKGDNLGGDCNDNEF--FEGL--LDGFCSMEGYSLQDVLG 344

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742862|emb|CBI35627.3| unnamed protein product [Vitis vinifera]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/347 (57%), Positives = 252/347 (72%), Gaps = 29/347 (8%)

Query: 1   MSNLDESRPIRPEYPV-------QYTDPRIPLTNLSAVRTRMESLQQFLLESINSNTLIS 53
           MSN        P++P        + TD R+PL NL+ V+ R++SL++FL +SI+ + +I 
Sbjct: 28  MSNSGRFFGQAPKFPFVGDITRQEGTDTRVPLLNLATVQIRVDSLERFLSDSISRSVVIG 87

Query: 54  QHQMNVVSSEIASAIHQVIVNGSALLACSPQQPTLQQLPPDPK-----------NPEIGS 102
             QM +VS+EI SAIHQ+IVNG+ALL+CS  QP     P               N EI  
Sbjct: 88  PDQMEMVSTEIVSAIHQIIVNGAALLSCS--QPEYSSFPAAGAAVLPEGYAVMGNEEIDG 145

Query: 103 EHDIESDCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPE 162
            +D + DCE++E+DAVELLAEHIHFCDICGKGFKRDANLRMHMRAHG++FKTP+ALAKP+
Sbjct: 146 GND-DGDCEVIELDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGNQFKTPEALAKPD 204

Query: 163 KGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFS 222
           K   + R+ RFSCPY GCNRNK HKKFRALKSVICVKNHFKRSHCPKMYSC++C+KKSFS
Sbjct: 205 KCMETQRRVRFSCPYQGCNRNKGHKKFRALKSVICVKNHFKRSHCPKMYSCNRCNKKSFS 264

Query: 223 VVSDLRSHYKNCGESRWKCSCGTSFSRKDKLFGHVALFEGHMPEVE-VDEK---MKHHDQ 278
           V++DLRSH K+CGES+W+CSCGTSFSRKDKLFGH+ALFEGHMP VE  DEK         
Sbjct: 265 VLADLRSHLKHCGESKWRCSCGTSFSRKDKLFGHMALFEGHMPAVENGDEKSVLSAAAVA 324

Query: 279 DVVVVGDDDDDDEMVDDIDDDGLSSFEGLLDLDGFGSFDDFCLQDVL 325
              +  D+ +D++ +   +++G+  FEGL    GFGS  ++CLQDVL
Sbjct: 325 AATMEEDEHEDEDGIGKEEENGM--FEGL--FQGFGSIGEYCLQDVL 367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584201|ref|XP_002532839.1| TRANSPARENT TESTA 1 protein, putative [Ricinus communis] gi|223527406|gb|EEF29546.1| TRANSPARENT TESTA 1 protein, putative [Ricinus communis]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/363 (54%), Positives = 249/363 (68%), Gaps = 61/363 (16%)

Query: 1   MSNLDESRPIRPEYPVQYTDPRIPLTNLSAVRTRMESLQQFLLESINSNTLISQHQMNVV 60
           MSN  +S       P    DPR+PL  LS VR RM+SLQQFL  S+NSN L+S+ +M++V
Sbjct: 1   MSNSGQS----SRAPAANLDPRVPLLKLSMVRERMDSLQQFLSNSVNSNALMSKDEMDMV 56

Query: 61  SSEIASAIHQVIVNGSALLACSPQQPTLQQLPPDPK--NPEIGSEHDIE----------S 108
           S+EI++AI Q+IVNG+ALL+CS        L    K  N     +  +E           
Sbjct: 57  SAEISTAIQQIIVNGTALLSCSQSVDKHSDLKTQTKITNQSENKKSSLEVEDKDDLDLEL 116

Query: 109 DCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGS--- 165
           D +IVE+DAVELLAEH+HFC+ICGKGFKRDANLRMHMRAHG++FKTP+AL++P+KG+   
Sbjct: 117 DSDIVEMDAVELLAEHVHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALSRPDKGNEFL 176

Query: 166 VSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVS 225
            +GRK RFSCPY+GCNRNKKHKKFR LKSV+CV+NHFKRSHCPKMYSC++C K+SFSVV+
Sbjct: 177 ATGRKRRFSCPYEGCNRNKKHKKFRPLKSVVCVRNHFKRSHCPKMYSCNRCKKRSFSVVA 236

Query: 226 DLRSHYKNCGESRWKCSCGTSFSRKDKLFGHVALFEGHMPEVEVDEKMKHHDQDVVVVGD 285
           DLRSH K+CGESRW+CSCGT+FSRKDKLFGH+ LFEGHMP                VVG+
Sbjct: 237 DLRSHLKHCGESRWRCSCGTTFSRKDKLFGHMTLFEGHMP---------------AVVGE 281

Query: 286 DDDDD-----------------------EMVDDIDDDGLSSFEGLLDLDGFGSFDDFCLQ 322
           D+D D                       +++ +  D+ L  FEGL  L+GFGSFD++ LQ
Sbjct: 282 DEDKDKGKSGAVAVEEDEEEEGGVVKGEKLIGNCMDNDL--FEGL--LEGFGSFDEYNLQ 337

Query: 323 DVL 325
           DV 
Sbjct: 338 DVF 340

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225467372|ref|XP_002267529.1| PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Vitis vinifera]

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 203/385 (52%), Positives = 257/385 (66%), Gaps = 66/385 (17%)

Query: 1   MSNLDESRPIRPEYPV-------QYTDPRIPLTNLSAVRTRMESLQQFLLESINSNTLIS 53
           MSN        P++P        + TD R+PL NL+ V+ R++SL++FL +SI+ + +I 
Sbjct: 1   MSNSGRFFGQAPKFPFVGDITRQEGTDTRVPLLNLATVQIRVDSLERFLSDSISRSVVIG 60

Query: 54  QHQMNVVSSEIASAIHQVIVNGSALLACSPQQPTLQQLPP-----------------DPK 96
             QM +VS+EI SAIHQ+IVNG+ALL+CS  QP     P                  +PK
Sbjct: 61  PDQMEMVSTEIVSAIHQIIVNGAALLSCS--QPEYSSFPAAGAAVLPEGYAVMGNGSNPK 118

Query: 97  N---PEIGS--------------------EHDI---------ESDCEIVEIDAVELLAEH 124
           N   P + +                    E D+         + DCE++E+DAVELLAEH
Sbjct: 119 NLKTPHLTTTAAAVKSGGPDAMDLKMERVEDDVKEEIDGGNDDGDCEVIELDAVELLAEH 178

Query: 125 IHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNK 184
           IHFCDICGKGFKRDANLRMHMRAHG++FKTP+ALAKP+K   + R+ RFSCPY GCNRNK
Sbjct: 179 IHFCDICGKGFKRDANLRMHMRAHGNQFKTPEALAKPDKCMETQRRVRFSCPYQGCNRNK 238

Query: 185 KHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYKNCGESRWKCSCG 244
            HKKFRALKSVICVKNHFKRSHCPKMYSC++C+KKSFSV++DLRSH K+CGES+W+CSCG
Sbjct: 239 GHKKFRALKSVICVKNHFKRSHCPKMYSCNRCNKKSFSVLADLRSHLKHCGESKWRCSCG 298

Query: 245 TSFSRKDKLFGHVALFEGHMPEVE-VDEK---MKHHDQDVVVVGDDDDDDEMVDDIDDDG 300
           TSFSRKDKLFGH+ALFEGHMP VE  DEK            +  D+ +D++ +   +++G
Sbjct: 299 TSFSRKDKLFGHMALFEGHMPAVENGDEKSVLSAAAVAAATMEEDEHEDEDGIGKEEENG 358

Query: 301 LSSFEGLLDLDGFGSFDDFCLQDVL 325
           +  FEGL    GFGS  ++CLQDVL
Sbjct: 359 M--FEGL--FQGFGSIGEYCLQDVL 379

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|365222896|gb|AEW69800.1| Hop-interacting protein THI038 [Solanum lycopersicum]

 Score =  364 bits (934), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 193/340 (56%), Positives = 240/340 (70%), Gaps = 37/340 (10%)

Query: 20  DPRIPLTNLSAVRTRMESLQQFLLESINSNTLISQHQMNVVSSEIASAIHQVIVNGSALL 79
           DP +PL NLSAV+TRM+SLQ+FL +S+NSNTL+ QHQMN+VS EI SAIHQ+IVNG+ALL
Sbjct: 18  DPMVPLLNLSAVQTRMDSLQKFLSDSVNSNTLLGQHQMNMVSDEITSAIHQIIVNGAALL 77

Query: 80  ACSP------------QQPTLQQLPPDPKN------PEIGSEHDIESDCE---------- 111
           + +             +  +  +L  + K+      PE     D ES  E          
Sbjct: 78  SSAQLTNPPPPPPPPPRPSSSAELKINLKSNHKRSFPEF-DRRDFESKVEVLDEEEEDGG 136

Query: 112 ---IVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEK---GS 165
              I+E+DAVELLAEHIHFCD CGKGFKRDANLRMHMRAHG+++KTP+ALAKPEK    S
Sbjct: 137 DWEIIELDAVELLAEHIHFCDFCGKGFKRDANLRMHMRAHGNQYKTPEALAKPEKCIDSS 196

Query: 166 VSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVS 225
            S ++ RFSCP+ GC RNK H KFR LKS ICVKNHFKRSHCPKMYSC +C+KKSFSV++
Sbjct: 197 NSNKRRRFSCPFIGCTRNKSHNKFRPLKSAICVKNHFKRSHCPKMYSCTRCNKKSFSVLA 256

Query: 226 DLRSHYKNCGESRWKCSCGTSFSRKDKLFGHVALFEGHMPEVEVDEKMKHHDQDVVVVGD 285
           DL+SH K+CGE++WKCSCGTSFSRKDKLFGH+ALFEGHMP VE    ++ +++DV V  +
Sbjct: 257 DLKSHLKHCGETKWKCSCGTSFSRKDKLFGHMALFEGHMPAVETAPAIE-NEKDVGVDIN 315

Query: 286 DDDDDEMVDDIDDDGLSSFEGLLDLDGFGSFDDFCLQDVL 325
               + ++ DI     + F   L LDGF S D +C QD+ 
Sbjct: 316 GGSGNGLM-DIRTGSDNGFLDRLMLDGFESIDSYCFQDLF 354

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451615|ref|XP_004143557.1| PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Cucumis sativus] gi|449523976|ref|XP_004168999.1| PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Cucumis sativus]

 Score =  356 bits (914), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 190/361 (52%), Positives = 240/361 (66%), Gaps = 50/361 (13%)

Query: 12  PEYPVQYT-------------DPRIPLTNLSAVRTRMESLQQFLLESINSNTLISQHQMN 58
           P +P++++             DPRI L NLS +R+RM++LQ FL  +I++   IS  QM+
Sbjct: 4   PTFPIEFSGDPIPTTTIIGSGDPRIALQNLSTIRSRMDALQIFLSHNIDTEVRISNQQMD 63

Query: 59  VVSSEIASAIHQVIVNGSALLAC----SPQQPTLQQ--------LPPDPKNPEIGSE--- 103
            VSSEI +A+ Q+IVNG+ALL C    +P  P L          L  D    E+  E   
Sbjct: 64  AVSSEIFTAVQQIIVNGAALLTCAQSKTPTPPDLTASATRTHPILVTDKSMAELKVEGAD 123

Query: 104 -------HDIESDCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQ 156
                   + + D EIVE+DA+ELLAEHIHFC+ICGKGFKRDANLRMHMRAHG++FKTP+
Sbjct: 124 EIAITESEEFDPDWEIVELDAMELLAEHIHFCEICGKGFKRDANLRMHMRAHGNQFKTPE 183

Query: 157 ALAKPEKGSVSG----RKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYS 212
           ALAKP    V      ++TRFSCPYDGC RNK HKKFRALKS+ICVKNHFKRSHCPKM+S
Sbjct: 184 ALAKPLDVVVGADHRAKRTRFSCPYDGCVRNKMHKKFRALKSLICVKNHFKRSHCPKMFS 243

Query: 213 CDKCHKKSFSVVSDLRSHYKNCGESRWKCSCGTSFSRKDKLFGHVALFEGHMPEVEVDE- 271
           C++C+KKSFSV++DL+SH K+CGES+W+CSCGT+FSRKDKLFGH+ALFEGHMP V  D  
Sbjct: 244 CNRCNKKSFSVMADLKSHLKHCGESKWRCSCGTTFSRKDKLFGHMALFEGHMPAVPDDAC 303

Query: 272 ------KMKHHDQDVVVVGDDDDDDEMVDDIDDDGLSSFEGLLDLDGFGSFDDFCLQDVL 325
                      D +   +  D +     +   DDG  SFE    LDGFG  ++ CL++VL
Sbjct: 304 PTTATTSGMDEDGESNQISKDGNLQNGSNGSSDDG--SFESF--LDGFGLIENQCLEEVL 359

Query: 326 G 326
           G
Sbjct: 360 G 360

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538148|ref|XP_003537566.1| PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Glycine max]

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 185/346 (53%), Positives = 238/346 (68%), Gaps = 47/346 (13%)

Query: 19  TDPRIPLTNLSAVRTRMESLQQFLLESINSNTLISQHQMNVVSSEIASAIHQVIVNGSAL 78
            DP + L NLS VRTRM+SLQ FL +SIN+NT ++  Q+ +VSS+I S+IHQ+IVNGSAL
Sbjct: 24  ADPHVLLQNLSLVRTRMDSLQHFLSQSINTNTPLAVDQIAMVSSQIVSSIHQLIVNGSAL 83

Query: 79  LACSPQQPTLQQLPPDP----KNPE--------------------------IGSEHDIES 108
           ++ S Q  T     PDP    K PE                           G   D + 
Sbjct: 84  VSYS-QNSTAASGAPDPPLYPKKPEPEPSVADKAKQILDSKFGPLEDDDDDDGGAEDFDD 142

Query: 109 DCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSG 168
              IVE+DA+E+LAEH+HFC+IC KGF+RD+NLRMHMRAHG++FKT +ALAKP + +   
Sbjct: 143 GSGIVELDAIEILAEHMHFCEICAKGFRRDSNLRMHMRAHGEQFKTVEALAKPSETTAQR 202

Query: 169 RKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLR 228
           R TRFSCP++GCNRNK H++FR LKSVICVKNHFKRSHCPKMY+C++C KK FSV+SDLR
Sbjct: 203 RATRFSCPFEGCNRNKLHRRFRPLKSVICVKNHFKRSHCPKMYTCERCRKKHFSVLSDLR 262

Query: 229 SHYKNC-GESRWKCSCGTSFSRKDKLFGHVALFEGHMPEVEVDEKMKHHDQDVVVVGDDD 287
           SH K+C GE+RWKC+CGT+FSRKDKLFGH+ALF+GH P +  DE+ K   + VV    +D
Sbjct: 263 SHAKHCGGEARWKCTCGTTFSRKDKLFGHIALFDGHAPALACDEEGK--GKQVV----ED 316

Query: 288 DDDEMVDDIDDDGLSSFEGLLD-------LDGFGSFDDFCLQDVLG 326
           D+D M+  +++    S   LL+        D FGS DD+CL++VLG
Sbjct: 317 DEDPML--MNESEFESDNCLLNQELPEGFFDDFGSIDDYCLKEVLG 360

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567692|ref|XP_003552051.1| PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Glycine max]

 Score =  343 bits (880), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 182/340 (53%), Positives = 235/340 (69%), Gaps = 32/340 (9%)

Query: 5   DESRPIRPEYPVQYTDPRIPLTNLSAVRTRMESLQQFLLESINSNTLISQHQMNVVSSEI 64
           D +R I  + P    DP++PL NLS VR RM+SLQ FL +SIN+NT ++  Q+ +VSS+I
Sbjct: 7   DPTRIIHSQDPNTTADPQVPLRNLSQVRNRMDSLQHFLSQSINTNTPLTVDQIAMVSSQI 66

Query: 65  ASAIHQVIVNGSALLACSPQQPTLQQLP--------------PDPKNPEIGSEHD-IESD 109
            S+IHQVIVNG+AL++ S                         D     + S+ + +E D
Sbjct: 67  LSSIHQVIVNGAALVSYSQNSIAAGAPDPPPYPKKPKPEPSVADKAKQTLDSKLEPLEGD 126

Query: 110 -CEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSG 168
             EIVE+DAVE+LAEH+HFC+ICGKGF+RDANLRMHMRAHG++FKT +ALAKP + +   
Sbjct: 127 DSEIVELDAVEILAEHMHFCEICGKGFRRDANLRMHMRAHGEQFKTAEALAKPSEKASWL 186

Query: 169 RKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLR 228
           R TRFSCP+ GCNRNK H++FR LKSVICVKNHFKRSHCPKMY+C++C KK FSV+SDLR
Sbjct: 187 RATRFSCPFVGCNRNKLHRRFRPLKSVICVKNHFKRSHCPKMYTCERCRKKHFSVLSDLR 246

Query: 229 SHYKNC-GESRWKCSCGTSFSRKDKLFGHVALFEGHMPEVEVDEKMKHHDQDVVVVGDDD 287
           SH K+C GE+RWKC+CGT+FSRKDKLFGH+ALFEGH P +  D + K   + +V    +D
Sbjct: 247 SHLKHCGGEARWKCTCGTTFSRKDKLFGHIALFEGHAPALACDSEGK--GKQMV----ED 300

Query: 288 DDDEMVDDIDDDGLSSFEGLLD-------LDGFGSFDDFC 320
           D+D M+  + + G    +  LD        D FGS DD+C
Sbjct: 301 DEDPML--MSESGFELDDCFLDQEFPEGFFDDFGSIDDYC 338

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463325|ref|XP_003601944.1| Protein SENSITIVE TO PROTON RHIZOTOXICITY [Medicago truncatula] gi|355490992|gb|AES72195.1| Protein SENSITIVE TO PROTON RHIZOTOXICITY [Medicago truncatula]

 Score =  326 bits (835), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 175/319 (54%), Positives = 230/319 (72%), Gaps = 22/319 (6%)

Query: 13  EYPVQYTDPRIPLTNLSAVRTRMESLQQFLLESINSNTLISQHQMNVVSSEIASAIHQVI 72
           + P    DP++PL NLS V+T ++SL+  L +SI +N  ++  Q+  VS++I + +H  I
Sbjct: 28  QNPSNTPDPQVPLRNLSLVQTSIDSLRTLLSQSITTNAPVTNDQLTAVSNQIFTVLHHTI 87

Query: 73  VNGSALLACSPQQPTLQQLPPDP-----KNPEIGSEHDIESDCEIVEIDAVELLAEHIHF 127
           VN +AL+      P +   P         NP    E   +SDCEIVE+DA+ELLAEH+HF
Sbjct: 88  VNAAALV------PGVSVFPSATFDSFNNNPLAAVE---DSDCEIVELDAMELLAEHLHF 138

Query: 128 CDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHK 187
           C+ICGKGFKRDANLRMHMRAHG++FKTP+ALAKP   ++  R T+FSCP++GCNRNKKHK
Sbjct: 139 CEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPL--NMVRRPTQFSCPFEGCNRNKKHK 196

Query: 188 KFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYKNCGESRWKCSCGTSF 247
           KF+ALKSVICVK HFKRSHCPKMYSC+ C KK++S++SDL+SH + CGES+WKCSCG++F
Sbjct: 197 KFKALKSVICVKTHFKRSHCPKMYSCNLCRKKNYSMLSDLKSHMRQCGESKWKCSCGSTF 256

Query: 248 SRKDKLFGHVALFEGHMPEVEVDEKMKHHDQDVVVVGDDDDDDEMVDDIDDDGLSSFEGL 307
           SRKDKLFGHVALFEGHMP V +++++K      VV  +++D  EM    DD+     E  
Sbjct: 257 SRKDKLFGHVALFEGHMPAVVLEDEVKGKQ---VVAEENEDPMEMALSKDDEIGMDEEFF 313

Query: 308 LDLDGFGSFDDFCLQDVLG 326
            D   FGS D++CL +VLG
Sbjct: 314 HD---FGSIDNYCLDEVLG 329

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528459|ref|XP_003532820.1| PREDICTED: zinc finger protein STOP1 homolog [Glycine max]

 Score =  320 bits (821), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 160/285 (56%), Positives = 204/285 (71%), Gaps = 16/285 (5%)

Query: 23  IPLTNLSAVRTRMESLQQFLLESINSNTLISQHQMNVVSSEIASAIHQVIVNGSALLACS 82
           + L NLS + TRM+S+Q F+ +SI S+TL++ HQMN+VS+EI +AI  VI NG AL+A S
Sbjct: 19  VSLRNLSQLSTRMDSVQSFVSQSIQSHTLLTHHQMNIVSNEILTAIRHVITNGVALVAAS 78

Query: 83  PQQPTLQQLPPDPKNPEIGSEHDIESDCEIVEIDAVELLAEHIHFCDICGKGFKRDANLR 142
                 +   P  + P + S ++ + D  +VE+DA+ELLA+H+HFC++CGKGF RDANLR
Sbjct: 79  ------ENALPLSETPTLDSPNNNDDD-NVVELDAMELLAKHLHFCEVCGKGFTRDANLR 131

Query: 143 MHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHF 202
           MHMRAHGDEFKTP+ALA   +G    + TRFSCP +GCNRNK HKKFRALKSV C++NHF
Sbjct: 132 MHMRAHGDEFKTPEALANKARGETRLKATRFSCPLEGCNRNKTHKKFRALKSVFCLRNHF 191

Query: 203 KRSHCPKMYSCDKCHKKSFSVVSDLRSHYKNC-GESRWKCSCGTSFSRKDKLFGHVALFE 261
           KRSHCPK   C++C KKSF+V+SDLRSH K C GE+ WKCSCGT+FSRKDKL GHVALFE
Sbjct: 192 KRSHCPKTLLCERCRKKSFAVLSDLRSHVKQCRGEATWKCSCGTTFSRKDKLLGHVALFE 251

Query: 262 GHMPEVEVDEKMKHHDQDVVVVGDDDDDDE-MVDDIDDDGLSSFE 305
           GH P       M   ++D VV    +   E   D +D+ G  S +
Sbjct: 252 GHSP-------MLGEERDTVVAAAAEGLPEGFFDGLDEFGFGSIQ 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
UNIPROTKB|Q943I6	522	LOC_Os01g65080 "Zinc finger pr	0.537	0.340	0.587	8.7e-65
TAIR|locus:2036303	499	STOP1 "AT1G34370" [Arabidopsis	0.486	0.322	0.618	2.3e-64
TAIR|locus:2172701	373	AT5G22890 [Arabidopsis thalian	0.468	0.415	0.628	8.6e-56
UNIPROTKB|Q2QX40	465	STAR3 "Zinc finger protein STA	0.649	0.462	0.473	4.3e-54
TAIR|locus:2175123	450	AT5G60470 "AT5G60470" [Arabido	0.462	0.34	0.376	2e-26
TAIR|locus:2078262	446	AT3G45260 "AT3G45260" [Arabido	0.432	0.320	0.381	8.2e-25
TAIR|locus:2205672	455	IDD7 "AT1G55110" [Arabidopsis	0.432	0.314	0.381	2.1e-24
TAIR|locus:2173624	500	IDD1 "AT5G66730" [Arabidopsis	0.429	0.284	0.388	2.6e-24
TAIR|locus:2167608	466	NUC "AT5G44160" [Arabidopsis t	0.480	0.341	0.337	5.2e-24
TAIR|locus:2143543	503	JKD "AT5G03150" [Arabidopsis t	0.432	0.284	0.375	5.8e-24

UNIPROTKB|Q943I6 LOC_Os01g65080 "Zinc finger protein STOP1 homolog" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 613 (220.8 bits), Expect = 8.7e-65, Sum P(2) = 8.7e-65
 Identities = 107/182 (58%), Positives = 137/182 (75%)

Query:    94 DPKNPEIGSEHDI--ESDCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDE 151
             D K  + G E +        +++++  E+LA H HFC ICGKGFKRDANLRMHMR HGDE
Sbjct:   248 DVKESDDGGERENLPPGSYVVLQLEKEEILAPHTHFCLICGKGFKRDANLRMHMRGHGDE 307

Query:   152 FKTPQALAKPEKGSV--SGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPK 209
             +KT  ALAKP K S   S   TR+SCPY GC RNK+HKKF+ LK+++CVKNH+KRSHC K
Sbjct:   308 YKTAAALAKPSKDSSLESAPVTRYSCPYVGCKRNKEHKKFQPLKTILCVKNHYKRSHCDK 367

Query:   210 MYSCDKCHKKSFSVVSDLRSHYKNCGESRWKCSCGTSFSRKDKLFGHVALFEGHMPEVEV 269
              Y+C +C+ K FSV++DL++H K+CG  +W CSCGT+FSRKDKLFGHVALF+GH P + +
Sbjct:   368 SYTCSRCNTKKFSVIADLKTHEKHCGRDKWLCSCGTTFSRKDKLFGHVALFQGHTPALPM 427

Query:   270 DE 271
             D+
Sbjct:   428 DD 429

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2036303 STOP1 "AT1G34370" [Arabidopsis thaliana (taxid:3702)]

 Score = 618 (222.6 bits), Expect = 2.3e-64, Sum P(2) = 2.3e-64
 Identities = 102/165 (61%), Positives = 135/165 (81%)

Query:   111 EIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRK 170
             EI++++  E+LA H HFC ICGKGFKRDANLRMHMR HGDE+KT  ALAKP K SV G +
Sbjct:   229 EILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGSE 288

Query:   171 T----RFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSD 226
                  R+SCP+ GC RNK+HKKF+ LK+++CVKNH+KR+HC K ++C +CH K FSV++D
Sbjct:   289 PMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKFSVIAD 348

Query:   227 LRSHYKNCGESRWKCSCGTSFSRKDKLFGHVALFEGHMPEVEVDE 271
             L++H K+CG+++W CSCGT+FSRKDKLFGH+ALF+GH P + ++E
Sbjct:   349 LKTHEKHCGKNKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEE 393

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP;TAS

GO:0010044 "response to aluminum ion" evidence=IMP

GO:0010447 "response to acidity" evidence=IMP

TAIR|locus:2172701 AT5G22890 [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 100/159 (62%), Positives = 125/159 (78%)

Query:   111 EIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKP----EKGSV 166
             +I+E+D  +LLA++ H+C ICGKGFKRDANLRMHMRAHGDE+KT +AL  P    +KG  
Sbjct:   202 DILELDVADLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKTREALISPTSQDKKGGY 261

Query:   167 SGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSD 226
             S +K  +SCP  GC  N++H+KF+ LKSVIC KNH+KRSHCPKMY C +C  K FSV+SD
Sbjct:   262 SLKKHYYSCPQHGCRWNQRHEKFQPLKSVICAKNHYKRSHCPKMYMCRRCSVKHFSVLSD 321

Query:   227 LRSHYKNCGESRWKCSCGTSFSRKDKLFGHVALFEGHMP 265
             LR+H K+CG+ +W CSCGT FSRKDKL  HV+LF GH+P
Sbjct:   322 LRTHEKHCGDIKWVCSCGTKFSRKDKLMSHVSLFLGHVP 360

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010200 "response to chitin" evidence=IEP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

UNIPROTKB|Q2QX40 STAR3 "Zinc finger protein STAR3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 107/226 (47%), Positives = 142/226 (62%)

Query:    45 SINSNTLISQHQMNVVSSEIASAIHQVIVNGSALLACSXXXXXXXXXXXDPKNPEIGSEH 104
             S  +N    + +   + S     + +V  NG A+  C              +NP   +E 
Sbjct:   154 SARNNETNREDEEEQMGSPDYDELFKVWTNGGAMDECVGAAGDEQDAR---ENPAAAAE- 209

Query:   105 DIESDCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPE-- 162
               E   E+++++  E+LA H HFC ICGKGFKRDANLRMHMR HGDE+K+  ALAKP   
Sbjct:   210 --EEKYEVLQLEEDEILAPHTHFCGICGKGFKRDANLRMHMRGHGDEYKSAAALAKPPPP 267

Query:   163 -KGSVSGRKT--RFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKK 219
              +G     +   R+SCP+ GC RN+ H  F+ LK+++CVKNH+KRSHC K + C +C  K
Sbjct:   268 PEGEEQPPQPERRYSCPHAGCKRNRMHASFQPLKTILCVKNHYKRSHCEKRHVCGRCGAK 327

Query:   220 SFSVVSDLRSHYKNCGESRWKCSCGTSFSRKDKLFGHVALFEGHMP 265
              FSV++DL++H K+CG  RW CSCGTSFSRKDKLF HVALF+GH P
Sbjct:   328 RFSVMADLKTHEKHCGRDRWLCSCGTSFSRKDKLFAHVALFQGHAP 373

GO:0005634 "nucleus" evidence=IDA

GO:0010044 "response to aluminum ion" evidence=IMP

GO:0043620 "regulation of DNA-dependent transcription in response to stress" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2175123 AT5G60470 "AT5G60470" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 2.0e-26, P = 2.0e-26
 Identities = 61/162 (37%), Positives = 86/162 (53%)

Query:    95 PKNPEIGSEHDIESDCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKT 154
             P+  E   E     + E++ +    L+A +  FC+IC KGF+R+ NL++H R H   +K 
Sbjct:    33 PRKRETFQEIQAYPNAEVISLSPKSLMATNRFFCEICNKGFQREQNLQLHKRGHNLPWKL 92

Query:   155 PQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCD 214
              Q   K  K  V  +K  + CP   C     H   RAL  +  +K HF R H  K + CD
Sbjct:    93 KQ---KTNKNQV--KKKVYICPEKSCVH---HDPARALGDLTGIKKHFSRKHGEKKWKCD 144

Query:   215 KCHKKSFSVVSDLRSHYKNCGESRWKCSCGTSFSRKDKLFGH 256
             KC KK ++V+SD ++H K CG   ++C CGT FSRKD    H
Sbjct:   145 KCSKK-YAVISDWKAHNKICGSREFRCDCGTLFSRKDSFISH 185

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2078262 AT3G45260 "AT3G45260" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 8.2e-25, P = 8.2e-25
 Identities = 58/152 (38%), Positives = 82/152 (53%)

Query:   107 ESDCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSV 166
             + D E++ +    L+  +   C++C KGFKRD NL++H R H   +K  Q   +  K  V
Sbjct:    49 DPDAEVIALSPNSLMTTNRFICEVCNKGFKRDQNLQLHRRGHNLPWKLKQ---RTNKEQV 105

Query:   167 SGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSD 226
               +K  + CP   C     H   RAL  +  +K HF R H  K + CDKC KK ++V+SD
Sbjct:   106 --KKKVYICPEKTCVH---HDPARALGDLTGIKKHFSRKHGEKKWKCDKCSKK-YAVMSD 159

Query:   227 LRSHYKNCGESRWKCSCGTSFSRKDKLFGHVA 258
              ++H K CG   ++C CGT FSRKD    H A
Sbjct:   160 WKAHSKICGTKEYRCDCGTLFSRKDSFITHRA 191

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2205672 IDD7 "AT1G55110" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 2.1e-24, P = 2.1e-24
 Identities = 58/152 (38%), Positives = 83/152 (54%)

Query:   107 ESDCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSV 166
             + + E++ +    L+A +   C++C KGF+RD NL++H R H   +K  Q   +  K  V
Sbjct:    73 DPEAEVMALSPKTLMATNRFICEVCNKGFQRDQNLQLHKRGHNLPWKLKQ---RSNKDVV 129

Query:   167 SGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSD 226
               RK  + CP  GC     H   RAL  +  +K HF R H  K + C+KC KK ++V SD
Sbjct:   130 --RKKVYVCPEPGCVH---HHPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKK-YAVQSD 183

Query:   227 LRSHYKNCGESRWKCSCGTSFSRKDKLFGHVA 258
              ++H K CG   +KC CGT FSR+D    H A
Sbjct:   184 WKAHAKTCGTKEYKCDCGTLFSRRDSFITHRA 215

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2173624 IDD1 "AT5G66730" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 59/152 (38%), Positives = 81/152 (53%)

Query:   107 ESDCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSV 166
             + D E++ +    L+A +   C+IC KGF+RD NL++H R H   +K  Q   K      
Sbjct:    42 DPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTKEV---- 97

Query:   167 SGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSD 226
               RK  + CP  GC     H   RAL  +  +K HF R H  K + C+KC KK ++V SD
Sbjct:    98 --RKKVYVCPVSGCVH---HDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKK-YAVQSD 151

Query:   227 LRSHYKNCGESRWKCSCGTSFSRKDKLFGHVA 258
              ++H K CG   +KC CGT FSR+D    H A
Sbjct:   152 WKAHSKICGTKEYKCDCGTLFSRRDSFITHRA 183

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009937 "regulation of gibberellic acid mediated signaling pathway" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IMP

GO:0010431 "seed maturation" evidence=IMP

TAIR|locus:2167608 NUC "AT5G44160" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 5.2e-24, P = 5.2e-24
 Identities = 57/169 (33%), Positives = 87/169 (51%)

Query:   107 ESDCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSV 166
             + + E++ +    L+A +   C++CGKGF+RD NL++H R H   +K  Q  +K      
Sbjct:    47 DPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEV---- 102

Query:   167 SGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSD 226
               RK  + CP   C     H   RAL  +  +K HF R H  K ++C+KC K+ ++V SD
Sbjct:   103 --RKRVYVCPEKTCVH---HHSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKR-YAVQSD 156

Query:   227 LRSHYKNCGESRWKCSCGTSFSRKDKLFGHVALFEGHMPEVEVDEKMKH 275
              ++H K CG   ++C CGT FSR+D    H A  +    E      + H
Sbjct:   157 WKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETAKINAVSH 205

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0010260 "organ senescence" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2143543 JKD "AT5G03150" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 5.8e-24, P = 5.8e-24
 Identities = 57/152 (37%), Positives = 81/152 (53%)

Query:   107 ESDCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSV 166
             + D +++ +    L+A +   C+IC KGF+RD NL++H R H      P  L +  K  V
Sbjct:    63 DPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHN----LPWKLKQRSKQEV 118

Query:   167 SGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSD 226
               +K  + CP   C     H   RAL  +  +K H+ R H  K + C+KC KK ++V SD
Sbjct:   119 IKKKV-YICPIKTCVH---HDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKK-YAVQSD 173

Query:   227 LRSHYKNCGESRWKCSCGTSFSRKDKLFGHVA 258
              ++H K CG   +KC CGT FSRKD    H A
Sbjct:   174 WKAHAKTCGTREYKCDCGTLFSRKDSFITHRA 205

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010075 "regulation of meristem growth" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0048364 "root development" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IMP

GO:0045604 "regulation of epidermal cell differentiation" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00008275001 SubName- Full=Chromosome undetermined scaffold_1335, whole genome shotgun sequence; (350 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	331
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.94
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.93
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.85
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.81
KOG3576	267	consensus Ovo and related transcription factors [T	99.68
KOG3608	467	consensus Zn finger proteins [General function pre	99.67
KOG3608	467	consensus Zn finger proteins [General function pre	99.65
KOG3576	267	consensus Ovo and related transcription factors [T	99.53
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.52
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.49
PHA00733	128	hypothetical protein	99.15
PLN03086	567	PRLI-interacting factor K; Provisional	99.04
PLN03086	567	PRLI-interacting factor K; Provisional	99.0
PHA02768	55	hypothetical protein; Provisional	98.95
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.65
PHA02768	55	hypothetical protein; Provisional	98.62
PHA00616	44	hypothetical protein	98.55
PHA00733	128	hypothetical protein	98.54
KOG3993	500	consensus Transcription factor (contains Zn finger	98.41
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.4
PHA00732	79	hypothetical protein	98.25
PHA00616	44	hypothetical protein	98.24
KOG3993	500	consensus Transcription factor (contains Zn finger	98.2
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.91
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.88
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.86
PHA00732	79	hypothetical protein	97.78
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.48
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.47
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.45
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.44
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.42
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.27
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.08
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.93
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.91
smart00355	26	ZnF_C2H2 zinc finger.	96.87
smart00355	26	ZnF_C2H2 zinc finger.	96.8
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.73
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.36
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	96.27
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.03
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	95.96
PRK04860	160	hypothetical protein; Provisional	95.96
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	95.72
COG5048	467	FOG: Zn-finger [General function prediction only]	95.66
KOG1146	1406	consensus Homeobox protein [General function predi	95.57
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	95.29
PRK04860	160	hypothetical protein; Provisional	95.1
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	94.87
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	93.91
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	93.65
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	92.93
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	92.35
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	92.16
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	91.77
KOG1146	1406	consensus Homeobox protein [General function predi	91.68
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	89.44
COG5048	467	FOG: Zn-finger [General function prediction only]	88.23
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	87.05
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	86.63
COG5236	493	Uncharacterized conserved protein, contains RING Z	86.61
COG4049	65	Uncharacterized protein containing archaeal-type C	86.51
COG1198	730	PriA Primosomal protein N' (replication factor Y)	85.83
KOG2186	276	consensus Cell growth-regulating nucleolar protein	84.41
KOG2893	341	consensus Zn finger protein [General function pred	84.34
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	83.33
TIGR00595	505	priA primosomal protein N'. All proteins in this f	83.1
COG4049	65	Uncharacterized protein containing archaeal-type C	83.05
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	82.99
PRK14873	665	primosome assembly protein PriA; Provisional	81.39
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	81.34

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.94  E-value=9.1e-28  Score=205.14  Aligned_cols=130  Identities=25%  Similarity=0.422  Sum_probs=66.2

Q ss_pred             CCCCCCCCCCCCCCchhhhhhhhhhc---CCCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccc
Q 020075           96 KNPEIGSEHDIESDCEIVEIDAVELL---AEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTR  172 (331)
Q Consensus        96 ~~~~~~~~~~~~~~~~~l~~h~~~h~---~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~  172 (331)
                      ..+.|..|++.+.....|..|...|-   ..+.+.|++|||.|..-..|+.|+|+|+-                     +
T Consensus       129 ~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l---------------------~  187 (279)
T KOG2462|consen  129 PRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTL---------------------P  187 (279)
T ss_pred             CceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCC---------------------C
Confidence            34444455555555555555555442   23445555555555555555555555542                     2


Q ss_pred             eeCCCCCCccccccCCccccccHHHHhcccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCH
Q 020075          173 FSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRK  250 (331)
Q Consensus       173 ~~C~~c~~~~~~~h~~~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~  250 (331)
                      +.|.+||          |.|...--|+.|+|+|+|||||.|..|+| .|..+++|+.||+ |.+.|+|.|. |+|+|+.+
T Consensus       188 c~C~iCG----------KaFSRPWLLQGHiRTHTGEKPF~C~hC~k-AFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~  256 (279)
T KOG2462|consen  188 CECGICG----------KAFSRPWLLQGHIRTHTGEKPFSCPHCGK-AFADRSNLRAHMQTHSDVKKHQCPRCGKSFALK  256 (279)
T ss_pred             ccccccc----------ccccchHHhhcccccccCCCCccCCcccc-hhcchHHHHHHHHhhcCCccccCcchhhHHHHH
Confidence            4444554          55555555555555555555555555555 5555555555555 5555555555 55555555


Q ss_pred             HHHHHHH
Q 020075          251 DKLFGHV  257 (331)
Q Consensus       251 ~~L~~H~  257 (331)
                      +.|.+|.
T Consensus       257 SyLnKH~  263 (279)
T KOG2462|consen  257 SYLNKHS  263 (279)
T ss_pred             HHHHHhh
Confidence            5555554

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.93  E-value=2.5e-27  Score=202.48  Aligned_cols=134  Identities=24%  Similarity=0.408  Sum_probs=122.0

Q ss_pred             CCCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHHhcc
Q 020075          122 AEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNH  201 (331)
Q Consensus       122 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~H  201 (331)
                      ....|+|..|||.+.+.++|.+|..+|..-                ...+.|.|++|+          |.|.....|+.|
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~----------------~s~ka~~C~~C~----------K~YvSmpALkMH  180 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSL----------------DSKKAFSCKYCG----------KVYVSMPALKMH  180 (279)
T ss_pred             cCCceeccccccccccccccchhhcccccc----------------cccccccCCCCC----------ceeeehHHHhhH
Confidence            455799999999999999999999999653                112568999999          999999999999


Q ss_pred             cccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccccccCCccc
Q 020075          202 FKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDEKMKHHDQD  279 (331)
Q Consensus       202 ~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~~~~~~~~~  279 (331)
                      +|+|+  -+++|.+||| .|.+.+.|+-|+| |||||||.|. |+|+|+.+++|+.||++|.+.|+|.|..|.+.+....
T Consensus       181 irTH~--l~c~C~iCGK-aFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~S  257 (279)
T KOG2462|consen  181 IRTHT--LPCECGICGK-AFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKS  257 (279)
T ss_pred             hhccC--CCcccccccc-cccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHH
Confidence            99998  6899999999 9999999999999 9999999999 9999999999999999999999999999999887776


Q ss_pred             ccccC
Q 020075          280 VVVVG  284 (331)
Q Consensus       280 ~~~~~  284 (331)
                      .+..+
T Consensus       258 yLnKH  262 (279)
T KOG2462|consen  258 YLNKH  262 (279)
T ss_pred             HHHHh
Confidence            66544

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.85  E-value=3.4e-22  Score=192.10  Aligned_cols=79  Identities=18%  Similarity=0.458  Sum_probs=67.7

Q ss_pred             ceeCCCCCCccccccCCccccccHHHHhcccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCC----ceecc----
Q 020075          172 RFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGES----RWKCS----  242 (331)
Q Consensus       172 ~~~C~~c~~~~~~~h~~~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ek----p~~C~----  242 (331)
                      +-.|-+|.          |...|...|+.|+|+|+|||||+|.+||+ .|.++.+|+.|+- |...-    +|.|+    
T Consensus       605 PNqCiiC~----------rVlSC~saLqmHyrtHtGERPFkCKiCgR-AFtTkGNLkaH~~vHka~p~~R~q~ScP~~~i  673 (958)
T KOG1074|consen  605 PNQCIICL----------RVLSCPSALQMHYRTHTGERPFKCKICGR-AFTTKGNLKAHMSVHKAKPPARVQFSCPSTFI  673 (958)
T ss_pred             ccceeeee----------ecccchhhhhhhhhcccCcCccccccccc-hhccccchhhcccccccCccccccccCCchhh
Confidence            56788877          88999999999999999999999999999 9999999999998 75443    36674    


Q ss_pred             CCcccCCHHHHHHHHHhhc
Q 020075          243 CGTSFSRKDKLFGHVALFE  261 (331)
Q Consensus       243 C~k~F~~~~~L~~H~~~H~  261 (331)
                      |-+.|...-.|..|+|+|.
T Consensus       674 c~~kftn~V~lpQhIriH~  692 (958)
T KOG1074|consen  674 CQKKFTNAVTLPQHIRIHL  692 (958)
T ss_pred             hcccccccccccceEEeec
Confidence            8899999999999999997

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.81  E-value=1e-20  Score=181.95  Aligned_cols=58  Identities=24%  Similarity=0.473  Sum_probs=54.4

Q ss_pred             ccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCc
Q 020075          211 YSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEV  269 (331)
Q Consensus       211 ~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~  269 (331)
                      ..|.+||+ .|...+.|..|+| |+|+|||.|. |++.|..+.+|+.||.+|....|+.-.
T Consensus       880 h~C~vCgk-~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~w~q~~srr  939 (958)
T KOG1074|consen  880 HVCNVCGK-QFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHMWVQPPSRR  939 (958)
T ss_pred             hhhccchh-cccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhhccccccCCCccC
Confidence            68999999 9999999999999 9999999999 999999999999999999988776544

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.68  E-value=1.4e-17  Score=135.95  Aligned_cols=116  Identities=26%  Similarity=0.566  Sum_probs=104.5

Q ss_pred             CCCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHHhcc
Q 020075          122 AEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNH  201 (331)
Q Consensus       122 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~H  201 (331)
                      +...|.|.+|+|.|.-..-|.+|++.|...                   +.+-|.+||          |.|.....|++|
T Consensus       114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~v-------------------kr~lct~cg----------kgfndtfdlkrh  164 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDV-------------------KRHLCTFCG----------KGFNDTFDLKRH  164 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHHHHhhhccHH-------------------HHHHHhhcc----------Ccccchhhhhhh
Confidence            456799999999999999999999999887                   778899999          889999999999


Q ss_pred             cccccCCCCccCCCCCCCccCChhHhHHHhh--cc----------CCCceecc-CCcccCCHHHHHHHHHhhcCCCCcc
Q 020075          202 FKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK--NC----------GESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEV  267 (331)
Q Consensus       202 ~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~--H~----------~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~  267 (331)
                      +|+|+|.+||+|..|+| +|+.+-.|..|++  |.          ..|.|.|+ ||.+-.+...+..|++.|+.-.|+.
T Consensus       165 ~rthtgvrpykc~~c~k-aftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Spal  242 (267)
T KOG3576|consen  165 TRTHTGVRPYKCSLCEK-AFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSPAL  242 (267)
T ss_pred             hccccCccccchhhhhH-HHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCHHH
Confidence            99999999999999999 9999999999998  53          35789999 9999999999999999988666543

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.67  E-value=2.6e-17  Score=144.72  Aligned_cols=159  Identities=16%  Similarity=0.236  Sum_probs=132.1

Q ss_pred             CCCCCCCCCchhhhhhhhhhcCCCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCcc---------
Q 020075          101 GSEHDIESDCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKT---------  171 (331)
Q Consensus       101 ~~~~~~~~~~~~l~~h~~~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~---------  171 (331)
                      ..|.+.+.+...|+.|.+.|+++|...|+.||.-|.++..|-.|.+.-+.-      ...+|.|..|-|.+         
T Consensus       183 ~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l------~~n~fqC~~C~KrFaTeklL~~H  256 (467)
T KOG3608|consen  183 AMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTEL------NTNSFQCAQCFKRFATEKLLKSH  256 (467)
T ss_pred             hhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhh------cCCchHHHHHHHHHhHHHHHHHH
Confidence            457778899999999999999999999999999999999999999876643      23688998887643         


Q ss_pred             ------ceeCCCCCCccccccCCccccccHHHHhcccc-cccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-
Q 020075          172 ------RFSCPYDGCNRNKKHKKFRALKSVICVKNHFK-RSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-  242 (331)
Q Consensus       172 ------~~~C~~c~~~~~~~h~~~k~f~~~~~l~~H~~-~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-  242 (331)
                            -|+|++|.          -...+...|.+|++ +|...|||+|+.|++ .|.+.+.|..|.. |. +-.|.|. 
T Consensus       257 v~rHvn~ykCplCd----------mtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~-~c~~esdL~kH~~~HS-~~~y~C~h  324 (467)
T KOG3608|consen  257 VVRHVNCYKCPLCD----------MTCSSASSLTTHIRYRHSKDKPFKCDECDT-RCVRESDLAKHVQVHS-KTVYQCEH  324 (467)
T ss_pred             HHHhhhcccccccc----------cCCCChHHHHHHHHhhhccCCCccccchhh-hhccHHHHHHHHHhcc-ccceecCC
Confidence                  38888888          77888888999987 455679999999999 8999999999998 87 6679995 


Q ss_pred             --CCcccCCHHHHHHHHHhhc-CCC--CccCccccccCCc
Q 020075          243 --CGTSFSRKDKLFGHVALFE-GHM--PEVEVDEKMKHHD  277 (331)
Q Consensus       243 --C~k~F~~~~~L~~H~~~H~-~e~--p~~c~~~~~~~~~  277 (331)
                        |..+|++...|++|++.++ |..  +|.|-.|..-+..
T Consensus       325 ~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~  364 (467)
T KOG3608|consen  325 PDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTS  364 (467)
T ss_pred             CCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhcc
Confidence              9999999999999988754 544  5899888875543

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.65  E-value=1.7e-16  Score=139.64  Aligned_cols=176  Identities=17%  Similarity=0.259  Sum_probs=123.7

Q ss_pred             cchhhhhhhhHhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhh--cCCCccccccchhhccC
Q 020075           60 VSSEIASAIHQVIVNGSALLACSPQQPTLQQLPPDPKNPEIGSEHDIESDCEIVEIDAVEL--LAEHIHFCDICGKGFKR  137 (331)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~h--~~~~~~~C~~C~k~F~~  137 (331)
                      +.+......|.+.|++++.+.|..+..                   -|.....|-.|.+..  ....+|+|..|.|.|.+
T Consensus       189 ~~~k~~LreH~r~Hs~eKvvACp~Cg~-------------------~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaT  249 (467)
T KOG3608|consen  189 MGNKYRLREHIRTHSNEKVVACPHCGE-------------------LFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFAT  249 (467)
T ss_pred             hccHHHHHHHHHhcCCCeEEecchHHH-------------------HhccccHHHHHHHhhhhhcCCchHHHHHHHHHhH
Confidence            455677788999999999999985444                   344444444444422  22335555555555555


Q ss_pred             HHHHHHHHHHhcCCCCCchhccCCcccccCC------------------CccceeCCCCCCccccccCCccccccHHHHh
Q 020075          138 DANLRMHMRAHGDEFKTPQALAKPEKGSVSG------------------RKTRFSCPYDGCNRNKKHKKFRALKSVICVK  199 (331)
Q Consensus       138 ~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~------------------~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~  199 (331)
                      ...|+.|++.|-          ..|+|..|+                  +.+||+|..|.          +.|...+.|.
T Consensus       250 eklL~~Hv~rHv----------n~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd----------~~c~~esdL~  309 (467)
T KOG3608|consen  250 EKLLKSHVVRHV----------NCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECD----------TRCVRESDLA  309 (467)
T ss_pred             HHHHHHHHHHhh----------hcccccccccCCCChHHHHHHHHhhhccCCCccccchh----------hhhccHHHHH
Confidence            555555555553          345555443                  23677777777          7788888899


Q ss_pred             cccccccCCCCccCCC--CCCCccCChhHhHHHhh--ccC--CCceecc-CCcccCCHHHHHHHHHh-h-----cCCCCc
Q 020075          200 NHFKRSHCPKMYSCDK--CHKKSFSVVSDLRSHYK--NCG--ESRWKCS-CGTSFSRKDKLFGHVAL-F-----EGHMPE  266 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~--C~k~~f~~~~~L~~H~~--H~~--ekp~~C~-C~k~F~~~~~L~~H~~~-H-----~~e~p~  266 (331)
                      +|...|. +-.|.|+.  |.. +|.+...|++|++  |-|  +-+|.|. |++.|++-.+|.+|++. |     .|.+.|
T Consensus       310 kH~~~HS-~~~y~C~h~~C~~-s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~~PsGh~RF  387 (467)
T KOG3608|consen  310 KHVQVHS-KTVYQCEHPDCHY-SVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHGFRLPSGHKRF  387 (467)
T ss_pred             HHHHhcc-ccceecCCCCCcH-HHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHHHhhcccCCCCCCce
Confidence            9999888 67899988  999 9999999999999  434  5679999 99999999999999865 4     355566


Q ss_pred             cCccccccCC
Q 020075          267 VEVDEKMKHH  276 (331)
Q Consensus       267 ~c~~~~~~~~  276 (331)
                      ...++...+-
T Consensus       388 tYk~~edG~m  397 (467)
T KOG3608|consen  388 TYKVDEDGFM  397 (467)
T ss_pred             eeeeccCcee
Confidence            6666655443

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.53  E-value=1.8e-15  Score=123.71  Aligned_cols=100  Identities=24%  Similarity=0.383  Sum_probs=89.0

Q ss_pred             ccceeCCCCCCccccccCCccccccHHHHhcccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCccc
Q 020075          170 KTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSF  247 (331)
Q Consensus       170 ~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F  247 (331)
                      ...|.|.+|+          |.|.-..-|.+|+++|...|.|-|..||| .|...-.|++|+| |+|.+||+|. |+|+|
T Consensus       115 ~d~ftCrvCg----------K~F~lQRmlnrh~kch~~vkr~lct~cgk-gfndtfdlkrh~rthtgvrpykc~~c~kaf  183 (267)
T KOG3576|consen  115 QDSFTCRVCG----------KKFGLQRMLNRHLKCHSDVKRHLCTFCGK-GFNDTFDLKRHTRTHTGVRPYKCSLCEKAF  183 (267)
T ss_pred             CCeeeeehhh----------hhhhHHHHHHHHhhhccHHHHHHHhhccC-cccchhhhhhhhccccCccccchhhhhHHH
Confidence            3569999999          99999999999999999999999999999 9999999999999 9999999999 99999


Q ss_pred             CCHHHHHHHHHhhc-----------CCCCccCccccccCCcccc
Q 020075          248 SRKDKLFGHVALFE-----------GHMPEVEVDEKMKHHDQDV  280 (331)
Q Consensus       248 ~~~~~L~~H~~~H~-----------~e~p~~c~~~~~~~~~~~~  280 (331)
                      +++..|..|++.-+           +++.|+|++|.-.....++
T Consensus       184 tqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~  227 (267)
T KOG3576|consen  184 TQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEV  227 (267)
T ss_pred             HhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhH
Confidence            99999999987533           4678999999875544443

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.52  E-value=3.1e-15  Score=142.37  Aligned_cols=107  Identities=22%  Similarity=0.563  Sum_probs=93.1

Q ss_pred             ccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHHhccccc
Q 020075          125 IHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKR  204 (331)
Q Consensus       125 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~H~~~  204 (331)
                      ...|++|.+.+.+...|+.|++.-+..        .         ...|.|.+|.          ..|..+.-|.+|+..
T Consensus       210 lltcpycdrgykrltslkeHikyrhek--------n---------e~nfsC~lCs----------ytFAyRtQLErhm~~  262 (1007)
T KOG3623|consen  210 LLTCPYCDRGYKRLTSLKEHIKYRHEK--------N---------EPNFSCMLCS----------YTFAYRTQLERHMQL  262 (1007)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHhh--------C---------CCCCcchhhh----------hhhhhHHHHHHHHHh
Confidence            468999999999999999999853321        0         1347888888          899999999999988


Q ss_pred             ccC-------------CCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHh
Q 020075          205 SHC-------------PKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVAL  259 (331)
Q Consensus       205 h~~-------------~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~  259 (331)
                      |..             -+.|+|..||| .|..+.+|+.|+| |.|||||.|+ |+|.|++...+..||..
T Consensus       263 hkpg~dqa~sltqsa~lRKFKCtECgK-AFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSS  331 (1007)
T KOG3623|consen  263 HKPGGDQAISLTQSALLRKFKCTECGK-AFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSS  331 (1007)
T ss_pred             hcCCCcccccccchhhhccccccccch-hhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccccc
Confidence            864             26799999999 9999999999999 9999999999 99999999999999853

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.49  E-value=6.7e-15  Score=140.11  Aligned_cols=68  Identities=24%  Similarity=0.484  Sum_probs=56.9

Q ss_pred             cccccHHHHhcccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHH
Q 020075          190 RALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVA  258 (331)
Q Consensus       190 k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~  258 (331)
                      |.|.-...|-+|.-.|+|.+||+|.+|.| .|..+.+|..|+| |.|||||.|+ |+|.|++...+.+||.
T Consensus       902 K~FqKqSSLaRHKYEHsGqRPyqC~iCkK-AFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  902 KAFQKQSSLARHKYEHSGQRPYQCIICKK-AFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQHMN  971 (1007)
T ss_pred             HHHHhhHHHHHhhhhhcCCCCcccchhhH-hhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhhhc
Confidence            44444444455555555558999999999 9999999999999 9999999999 9999999999999985

>PHA00733 hypothetical protein

Probab=99.15  E-value=6.6e-11  Score=93.35  Aligned_cols=87  Identities=18%  Similarity=0.280  Sum_probs=68.6

Q ss_pred             cCCCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHHhc
Q 020075          121 LAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKN  200 (331)
Q Consensus       121 ~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~  200 (331)
                      ...+++.|.+|.+.|.....|..|...                                                   .+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~~~~l---------------------------------------------------~~   64 (128)
T PHA00733         36 PEQKRLIRAVVKTLIYNPQLLDESSYL---------------------------------------------------YK   64 (128)
T ss_pred             hhhhhHHHHHHhhhccChhhhcchHHH---------------------------------------------------Hh
Confidence            446778888888888887777766321                                                   22


Q ss_pred             ccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcC
Q 020075          201 HFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEG  262 (331)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~  262 (331)
                      |+.. ++.+||.|+.|++ .|.....|..|++ |  +.+|.|. |++.|.....|..|++..++
T Consensus        65 ~~~~-~~~kPy~C~~Cgk-~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         65 LLTS-KAVSPYVCPLCLM-PFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             hccc-CCCCCccCCCCCC-cCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            3222 3358999999999 9999999999999 7  4679999 99999999999999987654

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.04  E-value=4.9e-10  Score=107.74  Aligned_cols=127  Identities=17%  Similarity=0.245  Sum_probs=96.8

Q ss_pred             cccccchhhccCHHHHHHHHHHhcCCCCCchhccCCccccc--CCC-------ccceeCCCCCCccccccCCccccccHH
Q 020075          126 HFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSV--SGR-------KTRFSCPYDGCNRNKKHKKFRALKSVI  196 (331)
Q Consensus       126 ~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~--C~~-------~~~~~C~~c~~~~~~~h~~~k~f~~~~  196 (331)
                      -.|+.|.+... ..+|..|...-.-         ....|..  |+.       ...+.|+.|+          +.|. ..
T Consensus       408 V~C~NC~~~i~-l~~l~lHe~~C~r---------~~V~Cp~~~Cg~v~~r~el~~H~~C~~Cg----------k~f~-~s  466 (567)
T PLN03086        408 VECRNCKHYIP-SRSIALHEAYCSR---------HNVVCPHDGCGIVLRVEEAKNHVHCEKCG----------QAFQ-QG  466 (567)
T ss_pred             EECCCCCCccc-hhHHHHHHhhCCC---------cceeCCcccccceeeccccccCccCCCCC----------Cccc-hH
Confidence            46888876544 4556677653321         2334553  553       3457888888          7775 56


Q ss_pred             HHhcccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccC----------CHHHHHHHHHhhcCCC
Q 020075          197 CVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFS----------RKDKLFGHVALFEGHM  264 (331)
Q Consensus       197 ~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~----------~~~~L~~H~~~H~~e~  264 (331)
                      .|+.|++.+|  ++|.|+ ||+ .+ .+..|..|+. |...+|+.|. |++.|.          ....|..|+.++ |.+
T Consensus       467 ~LekH~~~~H--kpv~Cp-Cg~-~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~r  540 (567)
T PLN03086        467 EMEKHMKVFH--EPLQCP-CGV-VL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSR  540 (567)
T ss_pred             HHHHHHHhcC--CCccCC-CCC-Cc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCc
Confidence            6899999987  899999 998 66 6789999999 9999999999 999995          346899999995 999


Q ss_pred             CccCccccccCCccc
Q 020075          265 PEVEVDEKMKHHDQD  279 (331)
Q Consensus       265 p~~c~~~~~~~~~~~  279 (331)
                      ++.|..|.......+
T Consensus       541 t~~C~~Cgk~Vrlrd  555 (567)
T PLN03086        541 TAPCDSCGRSVMLKE  555 (567)
T ss_pred             ceEccccCCeeeehh
Confidence            999999988766554

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.00  E-value=6.4e-10  Score=106.96  Aligned_cols=101  Identities=22%  Similarity=0.473  Sum_probs=81.2

Q ss_pred             CCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHHhccc
Q 020075          123 EHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHF  202 (331)
Q Consensus       123 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~H~  202 (331)
                      ++.+.|+.|++.|. ...|..|+++|+                     +++.|+ |+          +.+ ....|..|.
T Consensus       451 ~~H~~C~~Cgk~f~-~s~LekH~~~~H---------------------kpv~Cp-Cg----------~~~-~R~~L~~H~  496 (567)
T PLN03086        451 KNHVHCEKCGQAFQ-QGEMEKHMKVFH---------------------EPLQCP-CG----------VVL-EKEQMVQHQ  496 (567)
T ss_pred             ccCccCCCCCCccc-hHHHHHHHHhcC---------------------CCccCC-CC----------CCc-chhHHHhhh
Confidence            55679999999996 688999999975                     246777 76          433 446789999


Q ss_pred             ccccCCCCccCCCCCCCccC----------ChhHhHHHhhccCCCceecc-CCcccCCHHHHHHHHHh
Q 020075          203 KRSHCPKMYSCDKCHKKSFS----------VVSDLRSHYKNCGESRWKCS-CGTSFSRKDKLFGHVAL  259 (331)
Q Consensus       203 ~~h~~~k~~~C~~C~k~~f~----------~~~~L~~H~~H~~ekp~~C~-C~k~F~~~~~L~~H~~~  259 (331)
                      +.|...+++.|..|++ .|.          ..+.|..|....|.+++.|. ||+.|..+. |..|+..
T Consensus       497 ~thCp~Kpi~C~fC~~-~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vrlrd-m~~H~~~  562 (567)
T PLN03086        497 ASTCPLRLITCRFCGD-MVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVMLKE-MDIHQIA  562 (567)
T ss_pred             hccCCCCceeCCCCCC-ccccCccccchhhhhhhHHHHHHhcCCcceEccccCCeeeehh-HHHHHHH
Confidence            9999999999999999 884          24589999985599999999 999998764 5677654

>PHA02768 hypothetical protein; Provisional

Probab=98.95  E-value=2.3e-10  Score=74.80  Aligned_cols=41  Identities=20%  Similarity=0.424  Sum_probs=34.6

Q ss_pred             ccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHH
Q 020075          211 YSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLF  254 (331)
Q Consensus       211 ~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~  254 (331)
                      |.|+.||+ .|+..++|..|++ |+  +||+|. |+|.|.+.+.|.
T Consensus         6 y~C~~CGK-~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          6 YECPICGE-IYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             cCcchhCC-eeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            78888888 8888888888888 88  688888 888888777663

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.65  E-value=1.3e-08  Score=56.88  Aligned_cols=24  Identities=50%  Similarity=1.088  Sum_probs=18.9

Q ss_pred             HhHHHhh-ccCCCceecc-CCcccCC
Q 020075          226 DLRSHYK-NCGESRWKCS-CGTSFSR  249 (331)
Q Consensus       226 ~L~~H~~-H~~ekp~~C~-C~k~F~~  249 (331)
                      +|..|++ |+|+|||.|+ |+++|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            4778888 8888888888 8888863

...

>PHA02768 hypothetical protein; Provisional

Probab=98.62  E-value=2.9e-08  Score=64.96  Aligned_cols=42  Identities=12%  Similarity=0.270  Sum_probs=36.4

Q ss_pred             ceecc-CCcccCCHHHHHHHHHhhcCCCCccCccccccCCccccc
Q 020075          238 RWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDEKMKHHDQDVV  281 (331)
Q Consensus       238 p~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~~~~~~~~~~~  281 (331)
                      -|.|+ |||.|++.++|..|+++|+  +|+.|..|.+.+.....+
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            38999 9999999999999999999  799999999877655443

>PHA00616 hypothetical protein

Probab=98.55  E-value=3.5e-08  Score=61.39  Aligned_cols=33  Identities=18%  Similarity=0.374  Sum_probs=26.6

Q ss_pred             ceecc-CCcccCCHHHHHHHHHhhcCCCCccCcc
Q 020075          238 RWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVD  270 (331)
Q Consensus       238 p~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~  270 (331)
                      ||.|. ||+.|..++.|.+|++.|+|++|+.|+-
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            67888 8888888888888888888888877653

>PHA00733 hypothetical protein

Probab=98.54  E-value=4.6e-08  Score=77.19  Aligned_cols=71  Identities=15%  Similarity=0.091  Sum_probs=59.2

Q ss_pred             CCCccCCCCCCCccCChhHhHHH--h----hccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccccccCCcccc
Q 020075          208 PKMYSCDKCHKKSFSVVSDLRSH--Y----KNCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDEKMKHHDQDV  280 (331)
Q Consensus       208 ~k~~~C~~C~k~~f~~~~~L~~H--~----~H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~~~~~~~~~~  280 (331)
                      .+++.|.+|.+ .|.....|..|  +    .+.+.+||.|. |++.|.+...|..|++.|  +.+|.|..|...+.....
T Consensus        38 ~~~~~~~~~~~-~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~s  114 (128)
T PHA00733         38 QKRLIRAVVKT-LIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDS  114 (128)
T ss_pred             hhhHHHHHHhh-hccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHH
Confidence            47899999998 88887777766  2    24568999999 999999999999999987  468999999988776554


Q ss_pred             c
Q 020075          281 V  281 (331)
Q Consensus       281 ~  281 (331)
                      +
T Consensus       115 L  115 (128)
T PHA00733        115 T  115 (128)
T ss_pred             H
Confidence            3

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.41  E-value=8.6e-08  Score=87.16  Aligned_cols=107  Identities=15%  Similarity=0.294  Sum_probs=69.4

Q ss_pred             ccccccchhhccCHHHHHHHHH--HhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHHhccc
Q 020075          125 IHFCDICGKGFKRDANLRMHMR--AHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHF  202 (331)
Q Consensus       125 ~~~C~~C~k~F~~~~~L~~H~~--~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~H~  202 (331)
                      -|.|..|...|.....|-+|.-  +-+-+                     |+|+.|+          |.|.|..+|..|.
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vE---------------------YrCPEC~----------KVFsCPANLASHR  315 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRIVHVE---------------------YRCPECD----------KVFSCPANLASHR  315 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCeeEEee---------------------ecCCccc----------ccccCchhhhhhh
Confidence            3999999999999999999973  33333                     8888888          8999999999998


Q ss_pred             ccccCCCCcc--CCCCCCCccCChhHhHHHhh---ccCCCceecc-CCcccCCHHHHHHHHHhhcC
Q 020075          203 KRSHCPKMYS--CDKCHKKSFSVVSDLRSHYK---NCGESRWKCS-CGTSFSRKDKLFGHVALFEG  262 (331)
Q Consensus       203 ~~h~~~k~~~--C~~C~k~~f~~~~~L~~H~~---H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~  262 (331)
                      |.|--..--.  =..=.+....+....+.=.|   -..+-.|.|. |+|.|.+...|+.|+.+|..
T Consensus       316 RWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~  381 (500)
T KOG3993|consen  316 RWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQR  381 (500)
T ss_pred             cccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhc
Confidence            8874311000  00000001001100001011   1223479999 99999999999999998863

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.40  E-value=1e-07  Score=53.16  Aligned_cols=25  Identities=24%  Similarity=0.401  Sum_probs=21.8

Q ss_pred             hhhhhhhhcCCCccccccchhhccC
Q 020075          113 VEIDAVELLAEHIHFCDICGKGFKR  137 (331)
Q Consensus       113 l~~h~~~h~~~~~~~C~~C~k~F~~  137 (331)
                      |..|+++|++++||+|++|++.|.+
T Consensus         2 l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    2 LRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             HHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            6789999999999999999998864

...

>PHA00732 hypothetical protein

Probab=98.25  E-value=6.6e-07  Score=64.16  Aligned_cols=45  Identities=27%  Similarity=0.498  Sum_probs=36.9

Q ss_pred             CccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhh
Q 020075          210 MYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALF  260 (331)
Q Consensus       210 ~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H  260 (331)
                      ||.|..|++ .|.+...|..|++ ++.  ++.|+ |++.|.   .|..|++++
T Consensus         1 py~C~~Cgk-~F~s~s~Lk~H~r~~H~--~~~C~~CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          1 MFKCPICGF-TTVTLFALKQHARRNHT--LTKCPVCNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             CccCCCCCC-ccCCHHHHHHHhhcccC--CCccCCCCCEeC---Chhhhhccc
Confidence            588999999 9999999999997 432  36899 999998   588888664

>PHA00616 hypothetical protein

Probab=98.24  E-value=3.6e-07  Score=56.89  Aligned_cols=32  Identities=19%  Similarity=0.399  Sum_probs=30.3

Q ss_pred             CccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          210 MYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       210 ~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      ||.|..||+ .|..++.|..|++ |+|++|+.|+
T Consensus         1 pYqC~~CG~-~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          1 MYQCLRCGG-IFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CCccchhhH-HHhhHHHHHHHHHHhcCCCcccee
Confidence            689999999 9999999999999 9999999886

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.20  E-value=2.1e-07  Score=84.70  Aligned_cols=151  Identities=19%  Similarity=0.175  Sum_probs=100.8

Q ss_pred             CCCCCCCCCCCCchhhhhhhhhhcCCCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcc-----------ccc
Q 020075           98 PEIGSEHDIESDCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEK-----------GSV  166 (331)
Q Consensus        98 ~~~~~~~~~~~~~~~l~~h~~~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~-----------c~~  166 (331)
                      +.|..|...|.....|-+|.-...-..-|+|+.|+|.|.-..||-.|.|+|.........-..|-+           -..
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~r  347 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAER  347 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccc
Confidence            445556667777778888877665566799999999999999999999999643100000001100           000


Q ss_pred             C---CCccceeCCCCCCccccccCCccccccHHHHhcccccccCC---C-------------------------------
Q 020075          167 S---GRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCP---K-------------------------------  209 (331)
Q Consensus       167 C---~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~H~~~h~~~---k-------------------------------  209 (331)
                      .   .....|.|.+|+          |.|....-|++|..+|+..   +                               
T Consensus       348 sg~dss~gi~~C~~C~----------KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~  417 (500)
T KOG3993|consen  348 SGDDSSSGIFSCHTCG----------KKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSH  417 (500)
T ss_pred             cCCcccCceeecHHhh----------hhhHHHHHHHHhHHhhhccccchhcccCcchhhccccccccccccccccccccc
Confidence            0   112368999999          8888888888887777641   0                               


Q ss_pred             ------------CccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHh
Q 020075          210 ------------MYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVAL  259 (331)
Q Consensus       210 ------------~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~  259 (331)
                                  ...|++|+- .+..+..--.|.+ -..+.-|.|. |.-.|.....|.+|+..
T Consensus       418 g~~vl~~a~sael~~pp~~~~-ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~  480 (500)
T KOG3993|consen  418 GDEVLYVAGSAELELPPYDGS-PPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINK  480 (500)
T ss_pred             ccceeeeeccccccCCCCCCC-CcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhh
Confidence                        123555665 5555554444444 3344559999 99999999999999876

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.91  E-value=9.2e-06  Score=43.80  Aligned_cols=22  Identities=45%  Similarity=0.871  Sum_probs=18.2

Q ss_pred             eecc-CCcccCCHHHHHHHHHhh
Q 020075          239 WKCS-CGTSFSRKDKLFGHVALF  260 (331)
Q Consensus       239 ~~C~-C~k~F~~~~~L~~H~~~H  260 (331)
                      |.|+ |++.|.++..|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            6788 888888888888888775

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.88  E-value=7.3e-06  Score=44.21  Aligned_cols=23  Identities=52%  Similarity=0.995  Sum_probs=21.8

Q ss_pred             cccccchhhccCHHHHHHHHHHh
Q 020075          126 HFCDICGKGFKRDANLRMHMRAH  148 (331)
Q Consensus       126 ~~C~~C~k~F~~~~~L~~H~~~H  148 (331)
                      |+|++|++.|.++..|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            78999999999999999999976

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.86  E-value=2.2e-05  Score=52.14  Aligned_cols=49  Identities=29%  Similarity=0.572  Sum_probs=38.7

Q ss_pred             CccCCCCCCCccCChhHhHHHhh--ccCC-Cceecc-CCcccCCHHHHHHHHHhhcC
Q 020075          210 MYSCDKCHKKSFSVVSDLRSHYK--NCGE-SRWKCS-CGTSFSRKDKLFGHVALFEG  262 (331)
Q Consensus       210 ~~~C~~C~k~~f~~~~~L~~H~~--H~~e-kp~~C~-C~k~F~~~~~L~~H~~~H~~  262 (331)
                      .|.|++|++ .|. ...|..|..  |..+ +.+.|+ |...+.  .+|.+|+..+++
T Consensus         2 ~f~CP~C~~-~~~-~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    2 SFTCPYCGK-GFS-ESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             CcCCCCCCC-ccC-HHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence            489999999 665 567999987  7654 579999 998765  499999988653

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00732 hypothetical protein

Probab=97.78  E-value=1.6e-05  Score=56.96  Aligned_cols=23  Identities=30%  Similarity=0.465  Sum_probs=19.5

Q ss_pred             ccccccchhhccCHHHHHHHHHH
Q 020075          125 IHFCDICGKGFKRDANLRMHMRA  147 (331)
Q Consensus       125 ~~~C~~C~k~F~~~~~L~~H~~~  147 (331)
                      ||.|..||+.|.+...|..|++.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~   23 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARR   23 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhc
Confidence            57888888888888888888874

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.48  E-value=2.6e-05  Score=68.80  Aligned_cols=50  Identities=22%  Similarity=0.518  Sum_probs=43.8

Q ss_pred             CCCccCCC--CCCCccCChhHhHHHhh--cc------------------CCCceecc-CCcccCCHHHHHHHHH
Q 020075          208 PKMYSCDK--CHKKSFSVVSDLRSHYK--NC------------------GESRWKCS-CGTSFSRKDKLFGHVA  258 (331)
Q Consensus       208 ~k~~~C~~--C~k~~f~~~~~L~~H~~--H~------------------~ekp~~C~-C~k~F~~~~~L~~H~~  258 (331)
                      +|||+|++  |.| .|+....|+-|+.  |-                  ..|||.|+ |+|.|.....|+-|+.
T Consensus       347 ~KpykCpV~gC~K-~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNK-KYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchh-hhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            59999976  999 9999999999998  51                  24899999 9999999999998854

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.47  E-value=7e-05  Score=42.00  Aligned_cols=24  Identities=29%  Similarity=0.571  Sum_probs=18.8

Q ss_pred             ceecc-CCcccCCHHHHHHHHHhhc
Q 020075          238 RWKCS-CGTSFSRKDKLFGHVALFE  261 (331)
Q Consensus       238 p~~C~-C~k~F~~~~~L~~H~~~H~  261 (331)
                      ||.|. |++.|.+...|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            57788 8888888888888887764

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.45  E-value=9.3e-05  Score=39.95  Aligned_cols=24  Identities=50%  Similarity=1.023  Sum_probs=20.4

Q ss_pred             cccccchhhccCHHHHHHHHHHhc
Q 020075          126 HFCDICGKGFKRDANLRMHMRAHG  149 (331)
Q Consensus       126 ~~C~~C~k~F~~~~~L~~H~~~H~  149 (331)
                      |.|++|++.|.+...|+.|++.|+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            789999999999999999999874

...

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.44  E-value=0.00012  Score=39.43  Aligned_cols=23  Identities=35%  Similarity=0.792  Sum_probs=15.6

Q ss_pred             eecc-CCcccCCHHHHHHHHHhhc
Q 020075          239 WKCS-CGTSFSRKDKLFGHVALFE  261 (331)
Q Consensus       239 ~~C~-C~k~F~~~~~L~~H~~~H~  261 (331)
                      |.|+ |++.|.+...|..|+++|+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            5677 7777777777777777653

...

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.42  E-value=7e-05  Score=66.14  Aligned_cols=72  Identities=26%  Similarity=0.473  Sum_probs=47.2

Q ss_pred             CCCcccccc--chhhccCHHHHHHHHHH-hcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHH
Q 020075          122 AEHIHFCDI--CGKGFKRDANLRMHMRA-HGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICV  198 (331)
Q Consensus       122 ~~~~~~C~~--C~k~F~~~~~L~~H~~~-H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l  198 (331)
                      ++|||+|++  |.|.|+....|+-|+.- |...        +.           ..-+.             +       
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~--------~~-----------~~~p~-------------p-------  386 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQ--------KL-----------HENPS-------------P-------  386 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCc--------cc-----------CCCCC-------------c-------
Confidence            469999998  99999999999999863 2211        00           00000             0       


Q ss_pred             hcccccccCCCCccCCCCCCCccCChhHhHHHhhc
Q 020075          199 KNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYKN  233 (331)
Q Consensus       199 ~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~H  233 (331)
                      ..|.-.....|||+|++|+| .|..-..|+-|+.|
T Consensus       387 ~~~~~F~~~~KPYrCevC~K-RYKNlNGLKYHr~H  420 (423)
T COG5189         387 EKMNIFSAKDKPYRCEVCDK-RYKNLNGLKYHRKH  420 (423)
T ss_pred             cccccccccCCceeccccch-hhccCccceecccc
Confidence            01111122348899999998 88888888888774

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.27  E-value=0.0001  Score=41.33  Aligned_cols=26  Identities=42%  Similarity=0.672  Sum_probs=23.8

Q ss_pred             ccccccchhhccCHHHHHHHHHHhcC
Q 020075          125 IHFCDICGKGFKRDANLRMHMRAHGD  150 (331)
Q Consensus       125 ~~~C~~C~k~F~~~~~L~~H~~~H~~  150 (331)
                      ||.|..|++.|.+...|..|++.|.+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            68999999999999999999988753

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.08  E-value=0.00043  Score=45.93  Aligned_cols=46  Identities=28%  Similarity=0.546  Sum_probs=36.1

Q ss_pred             eeCCCCCCccccccCCccccccHHHHhcccccccC--CCCccCCCCCCCccCChhHhHHHhh
Q 020075          173 FSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHC--PKMYSCDKCHKKSFSVVSDLRSHYK  232 (331)
Q Consensus       173 ~~C~~c~~~~~~~h~~~k~f~~~~~l~~H~~~h~~--~k~~~C~~C~k~~f~~~~~L~~H~~  232 (331)
                      |.|++|+          + ......|..|....|.  .+.+.|++|.. .+.  .+|..|+.
T Consensus         3 f~CP~C~----------~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~-~~~--~~l~~Hl~   50 (54)
T PF05605_consen    3 FTCPYCG----------K-GFSESSLVEHCEDEHRSESKNVVCPICSS-RVT--DNLIRHLN   50 (54)
T ss_pred             cCCCCCC----------C-ccCHHHHHHHHHhHCcCCCCCccCCCchh-hhh--hHHHHHHH
Confidence            8899999          7 4556678999766554  36799999998 655  48999998

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.93  E-value=0.00067  Score=50.81  Aligned_cols=72  Identities=18%  Similarity=0.313  Sum_probs=21.1

Q ss_pred             eCCCCCCccccccCCccccccHHHHhcccccccCCCCccCCCCCCCccCChhHhHHHhhccCCCceecc-CCcccCCHHH
Q 020075          174 SCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYKNCGESRWKCS-CGTSFSRKDK  252 (331)
Q Consensus       174 ~C~~c~~~~~~~h~~~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~H~~ekp~~C~-C~k~F~~~~~  252 (331)
                      .|.+|+          ..|.....|..|+...|+-.   .+ ... .+.....+..+++..-...+.|. |++.|.+...
T Consensus         1 ~C~~C~----------~~f~~~~~l~~H~~~~H~~~---~~-~~~-~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~   65 (100)
T PF12756_consen    1 QCLFCD----------ESFSSVDDLLQHMKKKHGFD---IP-DQK-YLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREA   65 (100)
T ss_dssp             ---------------------------------------------------------------SSEEBSSSS-EESSHHH
T ss_pred             Cccccc----------cccccccccccccccccccc---cc-ccc-ccccccccccccccccCCCCCCCccCCCCcCHHH
Confidence            377777          77777777778876666421   11 111 23333344444442222379999 9999999999


Q ss_pred             HHHHHHhh
Q 020075          253 LFGHVALF  260 (331)
Q Consensus       253 L~~H~~~H  260 (331)
                      |..|++.+
T Consensus        66 l~~Hm~~~   73 (100)
T PF12756_consen   66 LQEHMRSK   73 (100)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHcCc
Confidence            99999975

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.91  E-value=0.00093  Score=42.65  Aligned_cols=38  Identities=21%  Similarity=0.357  Sum_probs=22.5

Q ss_pred             HHHhh--ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCC
Q 020075          228 RSHYK--NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMP  265 (331)
Q Consensus       228 ~~H~~--H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p  265 (331)
                      ..+.+  +..+.|-.|+ |+..+.+..+|++|+.++++.+|
T Consensus        12 ~~~~k~~~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   12 TKKPKSKSQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             ----CCCCTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             hhHHHHhhccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            44554  4667888888 88888888888888888777765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=96.87  E-value=0.00094  Score=36.45  Aligned_cols=23  Identities=30%  Similarity=0.755  Sum_probs=16.4

Q ss_pred             eecc-CCcccCCHHHHHHHHHhhc
Q 020075          239 WKCS-CGTSFSRKDKLFGHVALFE  261 (331)
Q Consensus       239 ~~C~-C~k~F~~~~~L~~H~~~H~  261 (331)
                      |.|. |++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            4677 7777777777777777654

>smart00355 ZnF_C2H2 zinc finger

Probab=96.80  E-value=0.0011  Score=36.23  Aligned_cols=25  Identities=44%  Similarity=0.773  Sum_probs=22.6

Q ss_pred             cccccchhhccCHHHHHHHHHHhcC
Q 020075          126 HFCDICGKGFKRDANLRMHMRAHGD  150 (331)
Q Consensus       126 ~~C~~C~k~F~~~~~L~~H~~~H~~  150 (331)
                      |.|..|++.|.....|..|++.|..
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~~   25 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHXX   25 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhcc
Confidence            6899999999999999999998753

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.73  E-value=0.00097  Score=49.89  Aligned_cols=71  Identities=20%  Similarity=0.400  Sum_probs=20.5

Q ss_pred             ccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHHhccccccc
Q 020075          127 FCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSH  206 (331)
Q Consensus       127 ~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~H~~~h~  206 (331)
                      +|..|+..|.....|..|+...++-                    .+...             ..+.....+..+.+.. 
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~--------------------~~~~~-------------~~l~~~~~~~~~~~~~-   46 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGF--------------------DIPDQ-------------KYLVDPNRLLNYLRKK-   46 (100)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             Ccccccccccccccccccccccccc--------------------ccccc-------------cccccccccccccccc-
Confidence            5999999999999999999765542                    00000             0001111111222211 


Q ss_pred             CCCCccCCCCCCCccCChhHhHHHhh
Q 020075          207 CPKMYSCDKCHKKSFSVVSDLRSHYK  232 (331)
Q Consensus       207 ~~k~~~C~~C~k~~f~~~~~L~~H~~  232 (331)
                      ....+.|.+|++ .|.+...|..|++
T Consensus        47 ~~~~~~C~~C~~-~f~s~~~l~~Hm~   71 (100)
T PF12756_consen   47 VKESFRCPYCNK-TFRSREALQEHMR   71 (100)
T ss_dssp             --SSEEBSSSS--EESSHHHHHHHHH
T ss_pred             cCCCCCCCccCC-CCcCHHHHHHHHc
Confidence            113699999999 9999999999999

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.36  E-value=0.0035  Score=40.06  Aligned_cols=30  Identities=30%  Similarity=0.553  Sum_probs=22.4

Q ss_pred             CCCccccccchhhccCHHHHHHHHHHhcCC
Q 020075          122 AEHIHFCDICGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       122 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      .+.|..|++|+..+.+..+|++|+.++++.
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~   50 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFK   50 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTT
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhcc
Confidence            477999999999999999999999887764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.27  E-value=0.0044  Score=61.21  Aligned_cols=71  Identities=15%  Similarity=0.263  Sum_probs=47.4

Q ss_pred             cccccHHHHhcccccccCCCCccCCCCC------CCccCChhHhHHHhh-ccCCCceecc--------CCcccCCHHHHH
Q 020075          190 RALKSVICVKNHFKRSHCPKMYSCDKCH------KKSFSVVSDLRSHYK-NCGESRWKCS--------CGTSFSRKDKLF  254 (331)
Q Consensus       190 k~f~~~~~l~~H~~~h~~~k~~~C~~C~------k~~f~~~~~L~~H~~-H~~ekp~~C~--------C~k~F~~~~~L~  254 (331)
                      ..|-+..+|.+|++.+|    |.|..|.      . .|.....|..|.+ ++    |.|.        +-..|.....|.
T Consensus       190 ~~fld~~el~rH~~~~h----~~chfC~~~~~~ne-yy~~~~dLe~HfR~~H----flCE~~~C~~~~f~~~~~~ei~lk  260 (669)
T KOG2231|consen  190 ERFLDDDELYRHLRFDH----EFCHFCDYKTGQNE-YYNDYDDLEEHFRKGH----FLCEEEFCRTKKFYVAFELEIELK  260 (669)
T ss_pred             hhhccHHHHHHhhccce----eheeecCcccccch-hcccchHHHHHhhhcC----ccccccccccceeeehhHHHHHHH
Confidence            78888899999998776    6676663      4 5777888999988 43    3342        223334455666


Q ss_pred             HHHHhhcCCCCccCc
Q 020075          255 GHVALFEGHMPEVEV  269 (331)
Q Consensus       255 ~H~~~H~~e~p~~c~  269 (331)
                      +|.+.+.-++-|.|.
T Consensus       261 ~~~~~~~~e~~~~~~  275 (669)
T KOG2231|consen  261 AHNRFIQHEKCYICR  275 (669)
T ss_pred             hhccccchheeccCC
Confidence            666555556666664

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.03  E-value=0.0045  Score=33.74  Aligned_cols=22  Identities=32%  Similarity=0.634  Sum_probs=16.8

Q ss_pred             eecc-CCcccCCHHHHHHHHHhh
Q 020075          239 WKCS-CGTSFSRKDKLFGHVALF  260 (331)
Q Consensus       239 ~~C~-C~k~F~~~~~L~~H~~~H  260 (331)
                      |.|. |++.|.+...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            5688 888888888888887654

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=95.96  E-value=0.0031  Score=34.42  Aligned_cols=23  Identities=43%  Similarity=1.068  Sum_probs=21.0

Q ss_pred             cccccchhhccCHHHHHHHHHHh
Q 020075          126 HFCDICGKGFKRDANLRMHMRAH  148 (331)
Q Consensus       126 ~~C~~C~k~F~~~~~L~~H~~~H  148 (331)
                      |.|.+|++.|.+...|+.|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            67999999999999999999754

>PRK04860 hypothetical protein; Provisional

Probab=95.96  E-value=0.0041  Score=50.94  Aligned_cols=36  Identities=31%  Similarity=0.765  Sum_probs=27.7

Q ss_pred             CccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCH
Q 020075          210 MYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRK  250 (331)
Q Consensus       210 ~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~  250 (331)
                      +|.|. |++    ....+++|.+ |+++++|.|. |++.|...
T Consensus       119 ~Y~C~-C~~----~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        119 PYRCK-CQE----HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEcC-CCC----eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            58887 875    3456788888 8888888888 88888654

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=95.72  E-value=0.0099  Score=32.06  Aligned_cols=22  Identities=36%  Similarity=0.623  Sum_probs=13.1

Q ss_pred             eecc-CCcccCCHHHHHHHHHhhc
Q 020075          239 WKCS-CGTSFSRKDKLFGHVALFE  261 (331)
Q Consensus       239 ~~C~-C~k~F~~~~~L~~H~~~H~  261 (331)
                      |.|+ |+.... ...|.+|++.|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            5666 776666 666777766654

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.66  E-value=0.0032  Score=59.79  Aligned_cols=153  Identities=21%  Similarity=0.240  Sum_probs=93.2

Q ss_pred             CCCCCCCCCCCCCchhhhhhhh--hhcCC--Cccccc--cchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCc
Q 020075           97 NPEIGSEHDIESDCEIVEIDAV--ELLAE--HIHFCD--ICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRK  170 (331)
Q Consensus        97 ~~~~~~~~~~~~~~~~l~~h~~--~h~~~--~~~~C~--~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~  170 (331)
                      ...+..|...+.....+..|.+  .|.++  +++.|+  .|++.|.+...+..|...|++.        .++.+......
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~  360 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSI--------SPAKEKLLNSS  360 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCC--------CccccccccCc
Confidence            4566778888888888999999  79999  899999  7999999999999999998886        33333222111


Q ss_pred             cceeCCCCCCccccccCCccccccHHHHhcccccccCCCCccCC--CCCCCccCChhHhHHHhh-ccCCCc--eecc-CC
Q 020075          171 TRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCD--KCHKKSFSVVSDLRSHYK-NCGESR--WKCS-CG  244 (331)
Q Consensus       171 ~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~H~~~h~~~k~~~C~--~C~k~~f~~~~~L~~H~~-H~~ekp--~~C~-C~  244 (331)
                      ..+.-..-.          ..   .. ...........+.+.|.  .|-. .+.....+..|.. |...++  +.|. |.
T Consensus       361 ~~~~~~~~~----------~~---~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (467)
T COG5048         361 SKFSPLLNN----------EP---PQ-SLQQYKDLKNDKKSETLSNSCIR-NFKRDSNLSLHIITHLSFRPYNCKNPPCS  425 (467)
T ss_pred             cccccccCC----------CC---cc-chhhccCccCCccccccccchhh-hhccccccccccccccccCCcCCCCCcch
Confidence            100000000          00   00 00011111112344442  3555 6777777777777 665554  3445 88


Q ss_pred             cccCCHHHHHHHHHhhcCCCCccCcccc
Q 020075          245 TSFSRKDKLFGHVALFEGHMPEVEVDEK  272 (331)
Q Consensus       245 k~F~~~~~L~~H~~~H~~e~p~~c~~~~  272 (331)
                      +.|.....|..|++.|....+..|....
T Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (467)
T COG5048         426 KSFNRHYNLIPHKKIHTNHAPLLCSILK  453 (467)
T ss_pred             hhccCcccccccccccccCCceeecccc
Confidence            8888888888888887766665554433

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=95.57  E-value=0.011  Score=61.91  Aligned_cols=50  Identities=20%  Similarity=0.192  Sum_probs=35.3

Q ss_pred             CCCCCCCCchhhhhhhh-hhcCCCccccccchhhccCHHHHHHHHHHhcCC
Q 020075          102 SEHDIESDCEIVEIDAV-ELLAEHIHFCDICGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       102 ~~~~~~~~~~~l~~h~~-~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      ++.-.+.....+..+++ .+.-.+.|+|+.|+..|+....|..|||.-+.+
T Consensus       441 ~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~  491 (1406)
T KOG1146|consen  441 KAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPE  491 (1406)
T ss_pred             chhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccc
Confidence            34444444444555544 445568999999999999999999999974433

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=95.29  E-value=0.012  Score=31.71  Aligned_cols=24  Identities=25%  Similarity=0.506  Sum_probs=19.0

Q ss_pred             cccccchhhccCHHHHHHHHHHhcC
Q 020075          126 HFCDICGKGFKRDANLRMHMRAHGD  150 (331)
Q Consensus       126 ~~C~~C~k~F~~~~~L~~H~~~H~~  150 (331)
                      |+|+.|+-... ...|..|++.|++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            78999998888 8899999998753

>PRK04860 hypothetical protein; Provisional

Probab=95.10  E-value=0.013  Score=48.08  Aligned_cols=35  Identities=20%  Similarity=0.300  Sum_probs=27.3

Q ss_pred             CccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCc
Q 020075          124 HIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRK  170 (331)
Q Consensus       124 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~  170 (331)
                      -+|.|. |++   ....+++|.++|+++        ++|.|..|++.
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~--------~~YrC~~C~~~  152 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGE--------AVYRCRRCGET  152 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCC--------ccEECCCCCce
Confidence            479998 987   777899999999998        55555555543

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=94.87  E-value=0.0068  Score=33.81  Aligned_cols=21  Identities=29%  Similarity=0.667  Sum_probs=12.9

Q ss_pred             eecc-CCcccCCHHHHHHHHHh
Q 020075          239 WKCS-CGTSFSRKDKLFGHVAL  259 (331)
Q Consensus       239 ~~C~-C~k~F~~~~~L~~H~~~  259 (331)
                      |.|. |++.|.+...|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            5566 66666666666666543

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=93.91  E-value=0.083  Score=45.85  Aligned_cols=26  Identities=15%  Similarity=0.254  Sum_probs=16.4

Q ss_pred             CCceecc-CCcccCCHHHHHHHHHhhc
Q 020075          236 ESRWKCS-CGTSFSRKDKLFGHVALFE  261 (331)
Q Consensus       236 ekp~~C~-C~k~F~~~~~L~~H~~~H~  261 (331)
                      .+++.|+ ||........|..-.|+|.
T Consensus       207 ~k~~PCPKCg~et~eTkdLSmStR~hk  233 (314)
T PF06524_consen  207 GKPIPCPKCGYETQETKDLSMSTRSHK  233 (314)
T ss_pred             CCCCCCCCCCCcccccccceeeeecch
Confidence            3667777 7766666666666556553

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=93.65  E-value=0.036  Score=30.80  Aligned_cols=21  Identities=43%  Similarity=0.891  Sum_probs=19.3

Q ss_pred             ccCCCCCCCccCChhHhHHHhh
Q 020075          211 YSCDKCHKKSFSVVSDLRSHYK  232 (331)
Q Consensus       211 ~~C~~C~k~~f~~~~~L~~H~~  232 (331)
                      |.|..|++ .|.+...|..|++
T Consensus         2 ~~C~~C~k-~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDK-YFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTB-BBSSHHHHHCCTT
T ss_pred             CCcccCCC-CcCCHHHHHHHHc
Confidence            78999999 9999999999987

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=92.93  E-value=0.072  Score=29.09  Aligned_cols=21  Identities=33%  Similarity=0.702  Sum_probs=17.7

Q ss_pred             cccccchhhccCHHHHHHHHHH
Q 020075          126 HFCDICGKGFKRDANLRMHMRA  147 (331)
Q Consensus       126 ~~C~~C~k~F~~~~~L~~H~~~  147 (331)
                      ..|+.||+.| ....|..|+.+
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            5799999999 67889999764

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=92.35  E-value=0.12  Score=28.16  Aligned_cols=19  Identities=37%  Similarity=0.857  Sum_probs=11.0

Q ss_pred             ecc-CCcccCCHHHHHHHHHh
Q 020075          240 KCS-CGTSFSRKDKLFGHVAL  259 (331)
Q Consensus       240 ~C~-C~k~F~~~~~L~~H~~~  259 (331)
                      .|+ ||+.| ....|..|+++
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHHh
Confidence            466 66666 45556666543

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.16  E-value=0.086  Score=44.14  Aligned_cols=79  Identities=22%  Similarity=0.537  Sum_probs=58.7

Q ss_pred             cceeCCCCCCccccccCCccccccHHHHhcccccccCCCCccCCCCCCCccCChhHhHHHhh--cc---------CCCce
Q 020075          171 TRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK--NC---------GESRW  239 (331)
Q Consensus       171 ~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~--H~---------~ekp~  239 (331)
                      ..|.|++-||-        ..|........|..+-|+   -.|..|.+ .|.+...|..|+.  |-         |..-|
T Consensus        78 ~~~~cqvagc~--------~~~d~lD~~E~hY~~~h~---~sCs~C~r-~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy  145 (253)
T KOG4173|consen   78 PAFACQVAGCC--------QVFDALDDYEHHYHTLHG---NSCSFCKR-AFPTGHLLDAHILEWHDSLFQALVERGQDMY  145 (253)
T ss_pred             ccccccccchH--------HHHhhhhhHHHhhhhccc---chhHHHHH-hCCchhhhhHHHHHHHHHHHHHHHHcCccHH
Confidence            45778776654        555555555666544443   47999999 9999999999997  52         45569


Q ss_pred             ec--c-CCcccCCHHHHHHHHH-hhc
Q 020075          240 KC--S-CGTSFSRKDKLFGHVA-LFE  261 (331)
Q Consensus       240 ~C--~-C~k~F~~~~~L~~H~~-~H~  261 (331)
                      .|  . |+-.|.+...-..|+- +|.
T Consensus       146 ~ClvEgCt~KFkT~r~RkdH~I~~Hk  171 (253)
T KOG4173|consen  146 QCLVEGCTEKFKTSRDRKDHMIRMHK  171 (253)
T ss_pred             HHHHHhhhhhhhhhhhhhhHHHHhcc
Confidence            99  4 9999999999999975 453

>smart00451 ZnF_U1 U1-like zinc finger

Probab=91.77  E-value=0.14  Score=30.16  Aligned_cols=22  Identities=18%  Similarity=0.495  Sum_probs=18.0

Q ss_pred             ceecc-CCcccCCHHHHHHHHHh
Q 020075          238 RWKCS-CGTSFSRKDKLFGHVAL  259 (331)
Q Consensus       238 p~~C~-C~k~F~~~~~L~~H~~~  259 (331)
                      +|.|. |++.|.....+..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            57888 88888888888888754

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=91.68  E-value=0.15  Score=53.89  Aligned_cols=54  Identities=20%  Similarity=0.393  Sum_probs=46.5

Q ss_pred             ccCCCCccCCCCCCCccCChhHhHHHhh--cc------------------------CCCceecc-CCcccCCHHHHHHHH
Q 020075          205 SHCPKMYSCDKCHKKSFSVVSDLRSHYK--NC------------------------GESRWKCS-CGTSFSRKDKLFGHV  257 (331)
Q Consensus       205 h~~~k~~~C~~C~k~~f~~~~~L~~H~~--H~------------------------~ekp~~C~-C~k~F~~~~~L~~H~  257 (331)
                      +...|.|+|+.|++ .|.....|-.|+|  |.                        +.+||.|. |..+|+.+.+|..|+
T Consensus       460 ~S~~kt~~cpkc~~-~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~Lsihl  538 (1406)
T KOG1146|consen  460 HSFFKTLKCPKCNW-HYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHL  538 (1406)
T ss_pred             ecccccccCCccch-hhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHH
Confidence            33447899999999 9999999999998  53                        23689999 999999999999999


Q ss_pred             Hh
Q 020075          258 AL  259 (331)
Q Consensus       258 ~~  259 (331)
                      ..
T Consensus       539 qS  540 (1406)
T KOG1146|consen  539 QS  540 (1406)
T ss_pred             HH
Confidence            75

>smart00451 ZnF_U1 U1-like zinc finger

Probab=89.44  E-value=0.29  Score=28.71  Aligned_cols=22  Identities=23%  Similarity=0.561  Sum_probs=20.0

Q ss_pred             CccCCCCCCCccCChhHhHHHhh
Q 020075          210 MYSCDKCHKKSFSVVSDLRSHYK  232 (331)
Q Consensus       210 ~~~C~~C~k~~f~~~~~L~~H~~  232 (331)
                      +|.|++|++ .|.....+..|++
T Consensus         3 ~~~C~~C~~-~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNV-TFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCC-ccCCHHHHHHHHC
Confidence            588999999 9999999999987

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=88.23  E-value=0.25  Score=46.73  Aligned_cols=62  Identities=34%  Similarity=0.540  Sum_probs=42.6

Q ss_pred             CCccCCCCCCCccCChhHhHHHhh---ccCC--Cceecc---CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          209 KMYSCDKCHKKSFSVVSDLRSHYK---NCGE--SRWKCS---CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       209 k~~~C~~C~k~~f~~~~~L~~H~~---H~~e--kp~~C~---C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      .++.|..|.. .|.....|..|.+   |+++  +|+.|.   |++.|.+...+..|..+|++-+++.+...
T Consensus       288 ~~~~~~~~~~-~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (467)
T COG5048         288 LPIKSKQCNI-SFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLL  357 (467)
T ss_pred             cCCCCccccC-CccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccc
Confidence            3566777777 6777777777766   6666  777776   77777777777777777776666655433

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.05  E-value=0.57  Score=46.75  Aligned_cols=46  Identities=24%  Similarity=0.408  Sum_probs=31.0

Q ss_pred             ccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C------CcccCCHHHHHHHHHhhc
Q 020075          211 YSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C------GTSFSRKDKLFGHVALFE  261 (331)
Q Consensus       211 ~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C------~k~F~~~~~L~~H~~~H~  261 (331)
                      -.|..|.. .|.....|.+|++ ++    |.|. |      +.-|.....|..|-|.++
T Consensus       183 p~C~~C~~-~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  183 PLCKFCHE-RFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             ccchhhhh-hhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC
Confidence            35777877 7777777777777 33    3344 4      456777777888877654

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=86.63  E-value=0.52  Score=42.73  Aligned_cols=48  Identities=23%  Similarity=0.364  Sum_probs=38.0

Q ss_pred             ccCCCCCCCccCChhHhHHHhh--ccC-------C-------------------Cceecc-CCcccCCHHHHHHHHHh
Q 020075          211 YSCDKCHKKSFSVVSDLRSHYK--NCG-------E-------------------SRWKCS-CGTSFSRKDKLFGHVAL  259 (331)
Q Consensus       211 ~~C~~C~k~~f~~~~~L~~H~~--H~~-------e-------------------kp~~C~-C~k~F~~~~~L~~H~~~  259 (331)
                      .+|-.|.. ..-+...|..||+  |-=       +                   +.-.|- |.-.|.....|..||.-
T Consensus       280 v~CLfC~~-~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e  356 (423)
T KOG2482|consen  280 VVCLFCTN-FYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVE  356 (423)
T ss_pred             eEEEeecc-chhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhccc
Confidence            58999999 8888999999998  620       1                   124566 99999999999999864

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=86.61  E-value=1.3  Score=40.36  Aligned_cols=27  Identities=19%  Similarity=0.272  Sum_probs=20.2

Q ss_pred             cccccc--chhhccCHHHHHHHHHHhcCC
Q 020075          125 IHFCDI--CGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       125 ~~~C~~--C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      .|.|+.  |..+......|+.|.+.-++.
T Consensus       151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~  179 (493)
T COG5236         151 SFKCPKSKCHRRCGSLKELKKHYKAQHGF  179 (493)
T ss_pred             HhcCCchhhhhhhhhHHHHHHHHHhhcCc
Confidence            478876  777777788899998876553

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=86.51  E-value=0.35  Score=31.54  Aligned_cols=26  Identities=35%  Similarity=0.726  Sum_probs=19.7

Q ss_pred             cCCCceecc-CCcccCCHHHHHHHHHh
Q 020075          234 CGESRWKCS-CGTSFSRKDKLFGHVAL  259 (331)
Q Consensus       234 ~~ekp~~C~-C~k~F~~~~~L~~H~~~  259 (331)
                      -||--+.|+ ||+.|.....+.+|+..
T Consensus        13 DGE~~lrCPRC~~~FR~~K~Y~RHVNK   39 (65)
T COG4049          13 DGEEFLRCPRCGMVFRRRKDYIRHVNK   39 (65)
T ss_pred             CCceeeeCCchhHHHHHhHHHHHHhhH
Confidence            466667888 88888888888888755

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]

Probab=85.83  E-value=0.64  Score=47.32  Aligned_cols=58  Identities=17%  Similarity=0.292  Sum_probs=34.4

Q ss_pred             CCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHHhcccccccCCCCccCCCCCCCccCChhHhHHHh
Q 020075          152 FKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHY  231 (331)
Q Consensus       152 ~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~  231 (331)
                      |.++.....-..|..||-.  +.|+.|.          -+          +..|...+...|.+||.             
T Consensus       426 flnRRGys~~l~C~~Cg~v--~~Cp~Cd----------~~----------lt~H~~~~~L~CH~Cg~-------------  470 (730)
T COG1198         426 FLNRRGYAPLLLCRDCGYI--AECPNCD----------SP----------LTLHKATGQLRCHYCGY-------------  470 (730)
T ss_pred             EEccCCccceeecccCCCc--ccCCCCC----------cc----------eEEecCCCeeEeCCCCC-------------
Confidence            4444444455667777744  7777776          21          22333335577777776             


Q ss_pred             hccCCCceecc-CCcc
Q 020075          232 KNCGESRWKCS-CGTS  246 (331)
Q Consensus       232 ~H~~ekp~~C~-C~k~  246 (331)
                        ....|..|+ ||..
T Consensus       471 --~~~~p~~Cp~Cgs~  484 (730)
T COG1198         471 --QEPIPQSCPECGSE  484 (730)
T ss_pred             --CCCCCCCCCCCCCC
Confidence              244678888 8854

>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]

Probab=84.41  E-value=0.57  Score=40.69  Aligned_cols=44  Identities=23%  Similarity=0.598  Sum_probs=28.8

Q ss_pred             ccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHH
Q 020075          211 YSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVA  258 (331)
Q Consensus       211 ~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~  258 (331)
                      |.|..||. .. -+..+.+|+- -++ .-|.|- |++.|.+ ..+..|..
T Consensus         4 FtCnvCgE-sv-KKp~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen    4 FTCNVCGE-SV-KKPQVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             Eehhhhhh-hc-cccchHHHHHhccC-CeeEEeeccccccc-chhhhhhh
Confidence            67777776 33 3455667776 455 557777 8888877 56666754

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=84.34  E-value=0.43  Score=41.02  Aligned_cols=30  Identities=27%  Similarity=0.451  Sum_probs=23.2

Q ss_pred             cccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCC
Q 020075          128 CDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGR  169 (331)
Q Consensus       128 C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~  169 (331)
                      |-+|++.|....-|.+|++.            |+|+|++|.+
T Consensus        13 cwycnrefddekiliqhqka------------khfkchichk   42 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQKA------------KHFKCHICHK   42 (341)
T ss_pred             eeecccccchhhhhhhhhhh------------ccceeeeehh
Confidence            78889999888888888764            6666666655

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=83.33  E-value=2  Score=32.75  Aligned_cols=24  Identities=25%  Similarity=0.509  Sum_probs=22.1

Q ss_pred             eec----c-CCcccCCHHHHHHHHHhhcC
Q 020075          239 WKC----S-CGTSFSRKDKLFGHVALFEG  262 (331)
Q Consensus       239 ~~C----~-C~k~F~~~~~L~~H~~~H~~  262 (331)
                      |.|    . |+..+.+...+.+|++.++|
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            899    8 99999999999999998765

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>TIGR00595 priA primosomal protein N'

Probab=83.10  E-value=0.87  Score=44.75  Aligned_cols=58  Identities=17%  Similarity=0.305  Sum_probs=35.3

Q ss_pred             CCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHHhcccccccCCCCccCCCCCCCccCChhHhHHHh
Q 020075          152 FKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHY  231 (331)
Q Consensus       152 ~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~  231 (331)
                      |.+.........|..||..  ..|+.|+                    ..+..|.......|..||. ..          
T Consensus       204 flnrrGya~~~~C~~Cg~~--~~C~~C~--------------------~~l~~h~~~~~l~Ch~Cg~-~~----------  250 (505)
T TIGR00595       204 FLNRRGYSKNLLCRSCGYI--LCCPNCD--------------------VSLTYHKKEGKLRCHYCGY-QE----------  250 (505)
T ss_pred             EEeCCcCCCeeEhhhCcCc--cCCCCCC--------------------CceEEecCCCeEEcCCCcC-cC----------
Confidence            3444444455678888854  7788876                    2233444445677888876 22          


Q ss_pred             hccCCCceecc-CCcc
Q 020075          232 KNCGESRWKCS-CGTS  246 (331)
Q Consensus       232 ~H~~ekp~~C~-C~k~  246 (331)
                          .-|..|+ |+..
T Consensus       251 ----~~~~~Cp~C~s~  262 (505)
T TIGR00595       251 ----PIPKTCPQCGSE  262 (505)
T ss_pred             ----CCCCCCCCCCCC
Confidence                2467788 8763

All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=83.05  E-value=0.78  Score=29.97  Aligned_cols=32  Identities=22%  Similarity=0.375  Sum_probs=27.2

Q ss_pred             hhcCCCccccccchhhccCHHHHHHHHHHhcC
Q 020075          119 ELLAEHIHFCDICGKGFKRDANLRMHMRAHGD  150 (331)
Q Consensus       119 ~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~  150 (331)
                      ...|+..+.|+-||..|.......+|...-++
T Consensus        11 ~RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          11 DRDGEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             ccCCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            45678899999999999999999999975443

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=82.99  E-value=1.9  Score=32.79  Aligned_cols=30  Identities=27%  Similarity=0.643  Sum_probs=22.9

Q ss_pred             CccCCCCCCCccCChhHhHHHhhccCCCceecc-CCcccCCH
Q 020075          210 MYSCDKCHKKSFSVVSDLRSHYKNCGESRWKCS-CGTSFSRK  250 (331)
Q Consensus       210 ~~~C~~C~k~~f~~~~~L~~H~~H~~ekp~~C~-C~k~F~~~  250 (331)
                      ...|+.||+ .|..          .+..|-.|+ ||..|.-.
T Consensus         9 KR~Cp~CG~-kFYD----------Lnk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen    9 KRTCPSCGA-KFYD----------LNKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             cccCCCCcc-hhcc----------CCCCCccCCCCCCccCcc
Confidence            368999998 6642          344788999 99999765

The function of members of this family is unknown.

>PRK14873 primosome assembly protein PriA; Provisional

Probab=81.39  E-value=1.2  Score=45.32  Aligned_cols=56  Identities=13%  Similarity=0.337  Sum_probs=34.0

Q ss_pred             CCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHHhcccccccCCCCccCCCCCCCccCChhHhHHHhh
Q 020075          153 KTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK  232 (331)
Q Consensus       153 ~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~  232 (331)
                      .++.....-..|..||..  ..|+.|+                    ..+..|...+...|..||. .            
T Consensus       375 lnRrGyap~l~C~~Cg~~--~~C~~C~--------------------~~L~~h~~~~~l~Ch~CG~-~------------  419 (665)
T PRK14873        375 VPRRGYVPSLACARCRTP--ARCRHCT--------------------GPLGLPSAGGTPRCRWCGR-A------------  419 (665)
T ss_pred             ecCCCCCCeeEhhhCcCe--eECCCCC--------------------CceeEecCCCeeECCCCcC-C------------
Confidence            344444444578888854  7888887                    1223333345677888876 2            


Q ss_pred             ccCCCceecc-CCcc
Q 020075          233 NCGESRWKCS-CGTS  246 (331)
Q Consensus       233 H~~ekp~~C~-C~k~  246 (331)
                        . .|+.|+ ||..
T Consensus       420 --~-~p~~Cp~Cgs~  431 (665)
T PRK14873        420 --A-PDWRCPRCGSD  431 (665)
T ss_pred             --C-cCccCCCCcCC
Confidence              1 367888 8864

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=81.34  E-value=0.51  Score=38.38  Aligned_cols=12  Identities=33%  Similarity=0.888  Sum_probs=7.0

Q ss_pred             eecc-CCcccCCH
Q 020075          239 WKCS-CGTSFSRK  250 (331)
Q Consensus       239 ~~C~-C~k~F~~~  250 (331)
                      |.|+ ||++|.+.
T Consensus        29 ~~c~~c~~~f~~~   41 (154)
T PRK00464         29 RECLACGKRFTTF   41 (154)
T ss_pred             eeccccCCcceEe
Confidence            5666 66666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	331
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		4e-07

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 68/155 (43%), Gaps = 22/155 (14%)
Query: 122 AEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCN 181
            E  + C  CGK F R  +L  H R H  E        KP K    G+   FS   D   
Sbjct: 18  GEKPYACPECGKSFSRSDHLAEHQRTHTGE--------KPYKCPECGKS--FSDKKDLTR 67
Query: 182 RNKKHKKFRALKSVICVKNHFKRSHC---------PKMYSCDKCHKKSFSVVSDLRSHYK 232
             + H   +  K   C K+  +R++           K Y+C +C  KSFS ++ LR+H +
Sbjct: 68  HQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPEC-GKSFSQLAHLRAHQR 126
Query: 233 -NCGESRWKC-SCGTSFSRKDKLFGHVALFEGHMP 265
            + GE  +KC  CG SFSR+D L  H     G  P
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKP 161

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	331
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-08
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-07
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-05
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-05
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-07
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	5e-04
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	5e-07
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-04
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	7e-07
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-06
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	3e-06
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	6e-04
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-05
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	5e-05
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-04
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	2e-05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-05
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	3e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	4e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-04
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	6e-05
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	6e-05
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	4e-04
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	2e-04
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	2e-04
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-04
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	3e-04
2epa_A	72	Krueppel-like factor 10; transforming growth facto	4e-04
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	5e-04
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	6e-04

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 51.0 bits (123), Expect = 2e-08
 Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 34/131 (25%)

Query: 131 CGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFR 190
           C K + + ++L+MH R H  E        KP           + C +  C      ++F 
Sbjct: 14  CNKRYFKLSHLQMHSRKHTGE--------KP-----------YQCDFKDCE-----RRFS 49

Query: 191 ALKSVICVKNHFKRSH-CPKMYSCDKCHKKSFSVVSDLRSHYKN-CGESRWKCS---CGT 245
                  +K H +R H   K + C  C ++ FS    L++H +   GE  + C    C  
Sbjct: 50  RSDQ---LKRH-QRRHTGVKPFQCKTC-QRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQK 104

Query: 246 SFSRKDKLFGH 256
            F+R D+L  H
Sbjct: 105 KFARSDELVRH 115

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 37/138 (26%), Positives = 50/138 (36%), Gaps = 37/138 (26%)

Query: 128 CDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHK 187
           C    + FK    L +HMR H  E        KP             C ++GC      K
Sbjct: 42  CSRELRPFKAQYMLVVHMRRHTGE--------KP-----------HKCTFEGCR-----K 77

Query: 188 KFRALKSVICVKNHFKRSH-CPKMYSC--DKCHKKSFSVVSDLRSHYKNC--GESRWKCS 242
            +  L++   +K H  RSH   K Y C  + C  K+FS  SD   H       E  + C 
Sbjct: 78  SYSRLEN---LKTH-LRSHTGEKPYMCEHEGCS-KAFSNASDRAKHQNRTHSNEKPYVCK 132

Query: 243 ---CGTSFSRKDKLFGHV 257
              C   ++    L  HV
Sbjct: 133 LPGCTKRYTDPSSLRKHV 150

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 29/105 (27%), Positives = 40/105 (38%), Gaps = 31/105 (29%)

Query: 131 CGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFR 190
           C K + R  NL+ H+R+H  E        KP           + C ++GC+     K F 
Sbjct: 75  CRKSYSRLENLKTHLRSHTGE--------KP-----------YMCEHEGCS-----KAFS 110

Query: 191 ALKSVICVKNHFKRSH-CPKMYSCDK--CHKKSFSVVSDLRSHYK 232
                     H  R+H   K Y C    C  K ++  S LR H K
Sbjct: 111 NASD---RAKHQNRTHSNEKPYVCKLPGCT-KRYTDPSSLRKHVK 151

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 32/144 (22%), Positives = 47/144 (32%), Gaps = 46/144 (31%)

Query: 128 CDICGKGFKRDANLRMHM---RAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNK 184
            D C + F     L  H+     HG+         K            F C + GC+R  
Sbjct: 6   WDGCSQEFDSQEQLVHHINSEHIHGER--------KE-----------FVCHWGGCSREL 46

Query: 185 KHKKFRALKSVICVKNHFKRSHC-PKMYSCD--KCHKKSFSVVSDLRSH---------YK 232
           +   F+A      +  H  R H   K + C    C  KS+S + +L++H         Y 
Sbjct: 47  RP--FKAQYM---LVVH-MRRHTGEKPHKCTFEGCR-KSYSRLENLKTHLRSHTGEKPYM 99

Query: 233 NCGESRWKCSCGTSFSRKDKLFGH 256
            C        C  +FS       H
Sbjct: 100 -CEHE----GCSKAFSNASDRAKH 118

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 47.1 bits (113), Expect = 2e-07
 Identities = 24/103 (23%), Positives = 33/103 (32%), Gaps = 31/103 (30%)

Query: 128 CDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHK 187
           C IC + F R  +L  H+R H  E        KP           F+C  D C      +
Sbjct: 6   CRICMRNFSRSDHLTTHIRTHTGE--------KP-----------FAC--DICG-----R 39

Query: 188 KFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSH 230
           KF         K H +          DK  ++  S    L + 
Sbjct: 40  KFARSDE---RKRH-RDIQHILPILEDKV-EELLSKNYHLENE 77

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 37.5 bits (88), Expect = 5e-04
 Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 2/51 (3%)

Query: 209 KMYSCDKCHKKSFSVVSDLRSHYKNCGESRWKCS-CGTSFSRKDKLFGHVA 258
           K ++CD C  + F+   + + H                  S+   L   VA
Sbjct: 30  KPFACDIC-GRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLENEVA 79

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 45.9 bits (109), Expect = 5e-07
 Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 26/94 (27%)

Query: 128 CDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHK 187
           C+ICG   ++ A+L  H R H          A             F C +  C      K
Sbjct: 10  CEICGFTCRQKASLNWHQRKH-----AETVAALR-----------FPCEF--CG-----K 46

Query: 188 KFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSF 221
           +F    S   V  H  +SH   + +  +    S 
Sbjct: 47  RFEKPDS---VAAHRSKSHPALLLAPQESSGPSS 77

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 6/51 (11%)

Query: 211 YSCDKCHKKSFSVVSDL----RSHYKNCGESRWKCS-CGTSFSRKDKLFGH 256
             C+ C   +    + L    R H +     R+ C  CG  F + D +  H
Sbjct: 8   LQCEICGF-TCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH 57

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 45.6 bits (109), Expect = 7e-07
 Identities = 29/137 (21%), Positives = 44/137 (32%), Gaps = 58/137 (42%)

Query: 123 EHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNR 182
            H      CGK + + ++L+ H+R H  E        KP           + C +DGC  
Sbjct: 5   THTCDYAGCGKTYTKSSHLKAHLRTHTGE--------KP-----------YHCDWDGCG- 44

Query: 183 NKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHY-KNCGESRWKC 241
                                                 F+   +L  HY K+ G   ++C
Sbjct: 45  ------------------------------------WKFARSDELTRHYRKHTGHRPFQC 68

Query: 242 S-CGTSFSRKDKLFGHV 257
             C  +FSR D L  H+
Sbjct: 69  QKCDRAFSRSDHLALHM 85

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 31/139 (22%), Positives = 46/139 (33%), Gaps = 35/139 (25%)

Query: 128 CDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHK 187
              C + F     L  H+               PE+ +         C ++ C R    K
Sbjct: 28  KKSCDRTFSTMHELVTHVTMEHVG--------GPEQNN-------HVCYWEECPRE--GK 70

Query: 188 KFRALKSVICVKNHFKRSHCP-KMYSCDK--CHKKSFSVVSDL----RSHYKNCGESRWK 240
            F+A   ++   NH  R H   K + C    C  K F+   +L    R+H    GE  +K
Sbjct: 71  SFKAKYKLV---NH-IRVHTGEKPFPCPFPGCG-KIFARSENLKIHKRTH---TGEKPFK 122

Query: 241 CS---CGTSFSRKDKLFGH 256
           C    C   F+       H
Sbjct: 123 CEFEGCDRRFANSSDRKKH 141

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 32/113 (28%)

Query: 123 EHIHFCDI--CGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGC 180
             IH+CD   C K + + ++L+ H+R H  E        KP           + C ++GC
Sbjct: 13  RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGE--------KP-----------YKCTWEGC 53

Query: 181 NRNKKHKKFRALKSVICVKNHFKRSHC-PKMYSCDKCHKKSFSVVSDLRSHYK 232
           +      +F        +  H  R H   K + C  C+ +SFS    L  H K
Sbjct: 54  D-----WRFARSDE---LTRH-YRKHTGAKPFQCGVCN-RSFSRSDHLALHMK 96

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 44.8 bits (107), Expect = 3e-06
 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 37/135 (27%)

Query: 128 CDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHK 187
           C  C K F     L++H R H  E        KP           F CP  G       K
Sbjct: 10  CPTCHKKFLSKYYLKVHNRKHTGE--------KP-----------FECPKCG-------K 43

Query: 188 KFRALKSVICVKNHFKRSHCP----KMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS 242
            +   ++++    H +  +C     ++++C  C +++F    +LR H   + GE  +KCS
Sbjct: 44  CYFRKENLL---EH-EARNCMNRSEQVFTCSVC-QETFRRRMELRLHMVSHTGEMPYKCS 98

Query: 243 -CGTSFSRKDKLFGH 256
            C   F +K  L  H
Sbjct: 99  SCSQQFMQKKDLQSH 113

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 38.3 bits (90), Expect = 6e-04
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 209 KMYSCDKCHKKSFSVVSDLRSHYKN-CGESRWKCS-CGTSFSRKDKLFGH 256
               C  CHK  F     L+ H +   GE  ++C  CG  + RK+ L  H
Sbjct: 6   SGVECPTCHK-KFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 43/132 (32%), Positives = 56/132 (42%), Gaps = 34/132 (25%)

Query: 128 CDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHK 187
           C  CGK F R  +L  H R H  E        KP           + CP  G       K
Sbjct: 24  CPECGKSFSRSDHLAEHQRTHTGE--------KP-----------YKCPECG-------K 57

Query: 188 KFRALKSVICVKNHFKRSHC-PKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CG 244
            F   K +     H +R+H   K Y C +C  KSFS  ++LR+H + + GE  + C  CG
Sbjct: 58  SFSDKKDLT---RH-QRTHTGEKPYKCPEC-GKSFSQRANLRAHQRTHTGEKPYACPECG 112

Query: 245 TSFSRKDKLFGH 256
            SFS+   L  H
Sbjct: 113 KSFSQLAHLRAH 124

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 42.4 bits (101), Expect = 5e-05
 Identities = 47/132 (35%), Positives = 60/132 (45%), Gaps = 34/132 (25%)

Query: 128 CDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHK 187
           C  CGK F + ANLR H R H  E        KP           ++CP  G       K
Sbjct: 80  CPECGKSFSQRANLRAHQRTHTGE--------KP-----------YACPECG-------K 113

Query: 188 KFRALKSVICVKNHFKRSHC-PKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CG 244
            F  L  +     H +R+H   K Y C +C K SFS   +L +H + + GE  +KC  CG
Sbjct: 114 SFSQLAHLR---AH-QRTHTGEKPYKCPECGK-SFSREDNLHTHQRTHTGEKPYKCPECG 168

Query: 245 TSFSRKDKLFGH 256
            SFSR+D L  H
Sbjct: 169 KSFSRRDALNVH 180

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 44/132 (33%), Positives = 58/132 (43%), Gaps = 34/132 (25%)

Query: 128 CDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHK 187
           C  CGK F    +L  H R H  E        KP           + CP  G       K
Sbjct: 52  CPECGKSFSDKKDLTRHQRTHTGE--------KP-----------YKCPECG-------K 85

Query: 188 KFRALKSVICVKNHFKRSHC-PKMYSCDKCHKKSFSVVSDLRSHYKN-CGESRWKCS-CG 244
            F    ++     H +R+H   K Y+C +C  KSFS ++ LR+H +   GE  +KC  CG
Sbjct: 86  SFSQRANLR---AH-QRTHTGEKPYACPEC-GKSFSQLAHLRAHQRTHTGEKPYKCPECG 140

Query: 245 TSFSRKDKLFGH 256
            SFSR+D L  H
Sbjct: 141 KSFSREDNLHTH 152

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 38/114 (33%)

Query: 125 IHFCDI--CGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNR 182
           ++ C    CGK FK+   L++H  +H  +         P           + CP++GC+ 
Sbjct: 1   MYVCHFENCGKAFKKHNQLKVHQFSHTQQ--------LP-----------YECPHEGCD- 40

Query: 183 NKKHKKFRALKSVICVKNHFKRSH----CPKMYSCDKCHKKSFSVVSDLRSHYK 232
               K+F        +K H ++ H    C K  SC    K      +    H  
Sbjct: 41  ----KRFSLPSR---LKRH-EKVHAGYPCKKDDSCSFVGKTW----TLYLKHVA 82

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 203 KRSHCP-KMYSCDKCHKKSFSVVSDLRSHYKNC---GESRWKCS-CGTSFSRKDKLFGH 256
           + +      Y C  C +  ++ +S+   HY          + C  C   F+RKD +  H
Sbjct: 2   EFTKEGEHTYRCKVCSR-VYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH 59

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 40.9 bits (97), Expect = 3e-05
 Identities = 31/108 (28%), Positives = 39/108 (36%), Gaps = 34/108 (31%)

Query: 128 CDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHK 187
           C+ICGK F+   +L  H  +H  E        KP           +SCP  G        
Sbjct: 10  CEICGKIFRDVYHLNRHKLSHSGE--------KP-----------YSCPVCG-------L 43

Query: 188 KFRALKSVICVKNHFKRSH---CPKMYSCDKCHKKSFSVVSDLRSHYK 232
           +F+    +     H  RSH     K Y C  C  K FS    L  H K
Sbjct: 44  RFKRKDRMS---YH-VRSHDGSVGKPYICQSC-GKGFSRPDHLNGHIK 86

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 40.2 bits (95), Expect = 4e-05
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 5/53 (9%)

Query: 209 KMYSCDKCHKKSFSVVSDLRSHYKN-CGESR--WKCS-CGTSFSRKDKLFGHV 257
           K Y C  CH   F+    ++ H      E+   + C  C T  +RK  L  H+
Sbjct: 14  KPYECYICHA-RFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 7/28 (25%), Positives = 11/28 (39%)

Query: 128 CDICGKGFKRDANLRMHMRAHGDEFKTP 155
           C IC   F +   ++MH+     E    
Sbjct: 18  CYICHARFTQSGTMKMHILQKHTENVAK 45

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 41.0 bits (97), Expect = 6e-05
 Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 39/133 (29%)

Query: 131 CGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFR 190
           C K F+ ++ +R H+  HG          +              C    C      K F 
Sbjct: 13  CTKMFRDNSAMRKHLHTHGP---------RV-----------HVC--AECG-----KAFV 45

Query: 191 ALKSVICVKNHFKRSH-CPKMYSC--DKCHKKSFSVVSDLRSHYK-NCGESRWKCS---C 243
                  +K H +  H   K + C  + C  K FS+  +LR+H + + G+  + C    C
Sbjct: 46  ESSK---LKRH-QLVHTGEKPFQCTFEGC-GKRFSLDFNLRTHVRIHTGDRPYVCPFDGC 100

Query: 244 GTSFSRKDKLFGH 256
              F++   L  H
Sbjct: 101 NKKFAQSTNLKSH 113

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 34/133 (25%)

Query: 131 CGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFR 190
           C KGF    +L  H   H  E        K            F+C  DGC+      +F 
Sbjct: 50  CEKGFTSLHHLTRHSLTHTGE--------KN-----------FTCDSDGCD-----LRFT 85

Query: 191 ALKSVICVKNHFKRSHCPKM--YSCDKCH-KKSFSVVSDLRSHYKN-CGESRWKCS---C 243
              +   +K HF R H  K+  Y C   +  K+F   + L+ H  +   +  ++C    C
Sbjct: 86  TKAN---MKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGC 142

Query: 244 GTSFSRKDKLFGH 256
              FS   +L  H
Sbjct: 143 DKRFSLPSRLKRH 155

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 36/134 (26%)

Query: 131 CGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFR 190
           CG  + ++  L+ H+  H  E        KP           F C  +GC      K F 
Sbjct: 20  CGAAYNKNWKLQAHLCKHTGE--------KP-----------FPCKEEGCE-----KGFT 55

Query: 191 ALKSVICVKNHFKRSHC-PKMYSCDKCH-KKSFSVVSDLRSHYK-NCGESRW--KCS--- 242
           +L  +     H   +H   K ++CD       F+  ++++ H+            C    
Sbjct: 56  SLHHLT---RH-SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFEN 111

Query: 243 CGTSFSRKDKLFGH 256
           CG +F + ++L  H
Sbjct: 112 CGKAFKKHNQLKVH 125

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 126 HFCDICGKGFKRDANLRMHMRAHGDE 151
             C+ICGK F+   +L  H  +H  E
Sbjct: 13  VACEICGKIFRDVYHLNRHKLSHSGE 38

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 128 CDICGKGFKRDANLRMHMRAH 148
           C+ICG  F+    L+ H+R H
Sbjct: 14  CEICGTRFRHLQTLKSHLRIH 34

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 20/122 (16%), Positives = 30/122 (24%), Gaps = 56/122 (45%)

Query: 128 CDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHK 187
           C  C K F++   L MH + + D    P                                
Sbjct: 18  CSHCDKTFRQKQLLDMHFKRYHDPNFVP----AA-------------------------- 47

Query: 188 KFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYKNC-GESRWKCS-CGT 245
                                  + C KC K +F+  + +  H  NC G    +    G 
Sbjct: 48  -----------------------FVCSKCGK-TFTRRNTMARHADNCAGPDGVEGENSGP 83

Query: 246 SF 247
           S 
Sbjct: 84  SS 85

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 38.6 bits (91), Expect = 3e-04
 Identities = 30/131 (22%), Positives = 39/131 (29%), Gaps = 60/131 (45%)

Query: 128 CDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHK 187
           C  CG+ F +  NL +H R H DE        +P                          
Sbjct: 20  CKFCGRHFTKSYNLLIHERTHTDE--------RP-------------------------- 45

Query: 188 KFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGT 245
                                  Y+CD CH K+F     LR H   +  E  +KC  CG 
Sbjct: 46  -----------------------YTCDICH-KAFRRQDHLRDHRYIHSKEKPFKCQECGK 81

Query: 246 SFSRKDKLFGH 256
            F +   L  H
Sbjct: 82  GFCQSRTLAVH 92

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 37.4 bits (87), Expect = 4e-04
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 21/62 (33%)

Query: 123 EHIHFCDI--CGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGC 180
              H C    CGK + + ++L+ H R H  E        KP           FSC + GC
Sbjct: 15  IRSHICSHPGCGKTYFKSSHLKAHTRTHTGE--------KP-----------FSCSWKGC 55

Query: 181 NR 182
            R
Sbjct: 56  ER 57

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 128 CDICGKGFKRDANLRMHMRAH 148
           C+ CG  F + A+LR H+  H
Sbjct: 14  CETCGARFVQVAHLRAHVLIH 34

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 37.0 bits (87), Expect = 6e-04
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 209 KMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGH 256
           + Y CD+C  KSFS  SDL  H + + GE  +KC  CG +F ++  L GH
Sbjct: 17  RRYKCDEC-GKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	331
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.97
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.96
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.93
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.92
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.92
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.91
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.91
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.91
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.9
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.9
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.9
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.86
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.85
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.83
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.82
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.82
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.81
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.81
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.81
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.81
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.81
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.79
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.77
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.77
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.77
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.72
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.68
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.68
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.67
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.67
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.67
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.66
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.65
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.65
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.64
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.61
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.61
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.61
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.61
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.61
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.61
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.6
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.6
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.59
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.59
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.58
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.57
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.56
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.56
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.55
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.55
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.54
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.54
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.54
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.53
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.52
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.52
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.52
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.52
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.51
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.5
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.5
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.49
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.49
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.47
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.47
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.45
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.45
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.45
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.44
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.42
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.41
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.41
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.4
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.37
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.36
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.35
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.33
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.3
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.29
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.28
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.28
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.28
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.28
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.28
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.28
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.28
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.28
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.28
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.27
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.27
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.27
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.26
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.26
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.26
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.26
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.26
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.25
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.25
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.25
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.25
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.25
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.25
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.24
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.24
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.24
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.24
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.24
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.23
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.23
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.23
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.23
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.23
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.23
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.23
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.23
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.22
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.22
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.22
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.22
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.22
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.22
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.22
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.22
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.22
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.22
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.22
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.21
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.21
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.21
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.21
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.21
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.21
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.21
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.21
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.21
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.21
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.2
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.2
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.2
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.2
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.2
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.2
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.2
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.19
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.19
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.18
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.18
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.18
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.18
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.18
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.18
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.17
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.17
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.16
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.16
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.16
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.16
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.16
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.15
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.15
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.15
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.15
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.14
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.14
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.14
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.13
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.13
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.13
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.13
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.13
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.13
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.13
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.12
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.12
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.12
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.12
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.12
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.12
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.12
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.11
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.11
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.11
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.11
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.11
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.1
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.1
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.1
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.09
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.09
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.08
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.07
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.07
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.07
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.07
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.06
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.06
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.06
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.06
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.05
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.02
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.01
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.01
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.01
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.01
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.01
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.01
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.98
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.98
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.97
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.97
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.97
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.96
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.96
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.96
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.9
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.9
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.87
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.78
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.77
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.76
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.75
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.74
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.73
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.73
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.73
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.72
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.72
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.71
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.7
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.7
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.69
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.68
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.68
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.66
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.64
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.62
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.62
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.61
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.6
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.59
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.57
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.53
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.53
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.53
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.49
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.47
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.47
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.46
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.46
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.46
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.45
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.44
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.43
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.43
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.43
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.42
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.4
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.39
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.39
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.38
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.38
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.72
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.72
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.29
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.27
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.26
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.26
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.25
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.25
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.24
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.24
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.23
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.21
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.18
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.47
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.15
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.15
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.41
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.12
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.4
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.1
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.09
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.36
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.08
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.08
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.07
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.06
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.98
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.87
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.57
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.54
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.9
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.18
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.92
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	95.62
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.61
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.34
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.29
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	93.82
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	86.69
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	85.91
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	84.79
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	83.42
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	80.7

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.97  E-value=2.8e-32  Score=230.99  Aligned_cols=167  Identities=28%  Similarity=0.493  Sum_probs=99.0

Q ss_pred             hhhhHhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhhcCCCccccccchhhccCHHHHHHHH
Q 020075           66 SAIHQVIVNGSALLACSPQQPTLQQLPPDPKNPEIGSEHDIESDCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHM  145 (331)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~h~~~~~~~C~~C~k~F~~~~~L~~H~  145 (331)
                      ...+...+.++++|.|.                   .|.+.|.....|..|++.|.++++|.|.+|++.|.....|..|+
T Consensus         9 l~~h~~~~~~~~~~~C~-------------------~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   69 (190)
T 2i13_A            9 SVAQAALEPGEKPYACP-------------------ECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQ   69 (190)
T ss_dssp             -----------------------------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHH
T ss_pred             chhhhhhcCCCCCCcCC-------------------CCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHH
Confidence            34566677777888776                   67777888888888888888888888888888888888888888


Q ss_pred             HHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHHhcccccccCCCCccCCCCCCCccCChh
Q 020075          146 RAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVS  225 (331)
Q Consensus       146 ~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~  225 (331)
                      ++|.++                   ++|.|++|+          +.|.....|..|++.|+++++|.|++|++ .|.+..
T Consensus        70 ~~h~~~-------------------~~~~C~~C~----------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~-~f~~~~  119 (190)
T 2i13_A           70 RTHTGE-------------------KPYKCPECG----------KSFSQRANLRAHQRTHTGEKPYACPECGK-SFSQLA  119 (190)
T ss_dssp             HHHHCC-------------------CCEECTTTC----------CEESCHHHHHHHHHHHHTCCCEECTTTCC-EESSHH
T ss_pred             HhcCCC-------------------CCccCcccC----------CccCCHHHHHHHHHhcCCCCCCcCCCCCC-ccCCHH
Confidence            888887                   445555555          66666666666666666666666666666 666666


Q ss_pred             HhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccccccCCccccc
Q 020075          226 DLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDEKMKHHDQDVV  281 (331)
Q Consensus       226 ~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~~~~~~~~~~~  281 (331)
                      .|..|++ |++++||.|. |++.|.+...|..|+++|++++||.|+.|...+.....+
T Consensus       120 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L  177 (190)
T 2i13_A          120 HLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDAL  177 (190)
T ss_dssp             HHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHH
T ss_pred             HHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccCCHHHH
Confidence            6666666 6666666666 666666666666666666666666666666655554433

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.96  E-value=1.1e-29  Score=214.94  Aligned_cols=141  Identities=29%  Similarity=0.491  Sum_probs=108.7

Q ss_pred             hhhhhhhhhhcCCCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCcc
Q 020075          111 EIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFR  190 (331)
Q Consensus       111 ~~l~~h~~~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k  190 (331)
                      ..|..|++.|.++++|.|++|++.|.....|..|++.|+++                   ++|.|++|+          +
T Consensus         7 ~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-------------------~~~~C~~C~----------~   57 (190)
T 2i13_A            7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGE-------------------KPYKCPECG----------K   57 (190)
T ss_dssp             ------------------------CCSSHHHHHGGGCC----------------------CCEECTTTC----------C
T ss_pred             ccchhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCC-------------------CCccCCCcC----------c
Confidence            45778899999999999999999999999999999999987                   678899998          9


Q ss_pred             ccccHHHHhcccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccC
Q 020075          191 ALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVE  268 (331)
Q Consensus       191 ~f~~~~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c  268 (331)
                      .|.....|..|++.|+++++|.|++|++ .|.+...|..|++ |+++++|.|. |++.|.+...|..|+++|++++||.|
T Consensus        58 ~f~~~~~l~~H~~~h~~~~~~~C~~C~~-~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  136 (190)
T 2i13_A           58 SFSDKKDLTRHQRTHTGEKPYKCPECGK-SFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKC  136 (190)
T ss_dssp             EESSHHHHHHHHHHHHCCCCEECTTTCC-EESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEEC
T ss_pred             hhCCHHHHHHHHHhcCCCCCccCcccCC-ccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeEC
Confidence            9999999999999999999999999999 9999999999999 9999999999 99999999999999999999999999


Q ss_pred             ccccccCCccccc
Q 020075          269 VDEKMKHHDQDVV  281 (331)
Q Consensus       269 ~~~~~~~~~~~~~  281 (331)
                      ..|...+.....+
T Consensus       137 ~~C~~~f~~~~~L  149 (190)
T 2i13_A          137 PECGKSFSREDNL  149 (190)
T ss_dssp             TTTCCEESCHHHH
T ss_pred             CCCCcccCCHHHH
Confidence            9999988766544

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.93  E-value=2.2e-26  Score=194.63  Aligned_cols=155  Identities=19%  Similarity=0.274  Sum_probs=138.5

Q ss_pred             CCCCCC--CCCCCCCCCchhhhhhhhhhcCCCcccc--ccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCc
Q 020075           95 PKNPEI--GSEHDIESDCEIVEIDAVELLAEHIHFC--DICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRK  170 (331)
Q Consensus        95 ~~~~~~--~~~~~~~~~~~~l~~h~~~h~~~~~~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~  170 (331)
                      ...+.|  ..|++.|.....|..|++.|.++++|.|  ..|++.|.+...|..|+++|+++                   
T Consensus        10 ~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-------------------   70 (190)
T 1tf6_A           10 YKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE-------------------   70 (190)
T ss_dssp             CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTC-------------------
T ss_pred             CcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCC-------------------
Confidence            344555  5899999999999999999999999999  88999999999999999999998                   


Q ss_pred             cceeCC--CCCCccccccCCccccccHHHHhccc-ccc-cCCCCccC--CCCCCCccCChhHhHHHhh-ccCCCceec--
Q 020075          171 TRFSCP--YDGCNRNKKHKKFRALKSVICVKNHF-KRS-HCPKMYSC--DKCHKKSFSVVSDLRSHYK-NCGESRWKC--  241 (331)
Q Consensus       171 ~~~~C~--~c~~~~~~~h~~~k~f~~~~~l~~H~-~~h-~~~k~~~C--~~C~k~~f~~~~~L~~H~~-H~~ekp~~C--  241 (331)
                      ++|.|.  .|+          +.|.....|..|+ +.| .++++|.|  +.|++ .|.+...|..|++ |++++||.|  
T Consensus        71 ~~~~C~~~~C~----------~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~~  139 (190)
T 1tf6_A           71 KNFTCDSDGCD----------LRFTTKANMKKHFNRFHNIKICVYVCHFENCGK-AFKKHNQLKVHQFSHTQQLPYECPH  139 (190)
T ss_dssp             CCEECCSSSCC----------CEESCHHHHHHHHHTTSSTTTSCCEECSSSSCE-ECSSHHHHHHHHGGGSSSCSSBCCS
T ss_pred             CceeCCCCCCC----------CccCCHHHHHHHHHHhcCCCcceeeCCCCCCcc-ccCCHHHHHHHHHHhCCCCCccCCC
Confidence            678888  788          9999999999999 666 36789999  88999 9999999999999 999999999  


Q ss_pred             c-CCcccCCHHHHHHHHHhhcCCCCccCcc---ccccCCcccccc
Q 020075          242 S-CGTSFSRKDKLFGHVALFEGHMPEVEVD---EKMKHHDQDVVV  282 (331)
Q Consensus       242 ~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~---~~~~~~~~~~~~  282 (331)
                      . |++.|.+...|..|+++|+|   |.|..   |...+.....+.
T Consensus       140 ~~C~k~F~~~~~L~~H~~~H~~---~~C~~~~~C~~~f~~~~~l~  181 (190)
T 1tf6_A          140 EGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLYL  181 (190)
T ss_dssp             SSCCCBCSSHHHHHHHHTSSCS---CCCCSTTTCCCCCSCHHHHH
T ss_pred             CCCCchhcCHHHHHHHHHHhCC---CcCCCCCcCCCccccHHHHH
Confidence            6 99999999999999999998   88888   888777665443

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.92  E-value=5.4e-25  Score=179.70  Aligned_cols=135  Identities=22%  Similarity=0.349  Sum_probs=123.8

Q ss_pred             CCCCCCCCCCCCchhhhhhhh---hhcCCCccccccc-----hhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCC
Q 020075           98 PEIGSEHDIESDCEIVEIDAV---ELLAEHIHFCDIC-----GKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGR  169 (331)
Q Consensus        98 ~~~~~~~~~~~~~~~l~~h~~---~h~~~~~~~C~~C-----~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~  169 (331)
                      +.|..|++.|.....|..|++   +|.++++|.|.+|     ++.|.....|..|+++|+++                  
T Consensus         4 ~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~------------------   65 (155)
T 2gli_A            4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE------------------   65 (155)
T ss_dssp             CCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCC------------------
T ss_pred             CCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCC------------------
Confidence            457789999999999999998   7889999998753     49999999999999999998                  


Q ss_pred             ccceeCCC--CCCccccccCCccccccHHHHhcccccccCCCCccCCC--CCCCccCChhHhHHHh-h-ccCCCceec--
Q 020075          170 KTRFSCPY--DGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDK--CHKKSFSVVSDLRSHY-K-NCGESRWKC--  241 (331)
Q Consensus       170 ~~~~~C~~--c~~~~~~~h~~~k~f~~~~~l~~H~~~h~~~k~~~C~~--C~k~~f~~~~~L~~H~-~-H~~ekp~~C--  241 (331)
                       ++|.|.+  |+          +.|.....|..|++.|+++++|.|++  |++ .|.++..|..|+ + |++++||.|  
T Consensus        66 -~~~~C~~~~C~----------~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~-~f~~~~~L~~H~~~~H~~~~~~~C~~  133 (155)
T 2gli_A           66 -KPHKCTFEGCR----------KSYSRLENLKTHLRSHTGEKPYMCEHEGCSK-AFSNASDRAKHQNRTHSNEKPYVCKL  133 (155)
T ss_dssp             -CCCCCCSTTCC----------CCCSSHHHHHHHHHHTTTCCCEECCSTTCCC-EESSSSTTHHHHHHTTCSCCCEECCS
T ss_pred             -CCccCCCCCCC----------CcccCHHHHHHHHHHcCCCCCeeCCCCCCCC-ccCCHHHHHHHHHHhcCCCCCeeCCC
Confidence             6678875  88          99999999999999999999999998  999 999999999999 6 999999999  


Q ss_pred             c-CCcccCCHHHHHHHHHhhcC
Q 020075          242 S-CGTSFSRKDKLFGHVALFEG  262 (331)
Q Consensus       242 ~-C~k~F~~~~~L~~H~~~H~~  262 (331)
                      + |++.|.+...|..|+++|+|
T Consensus       134 ~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          134 PGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             TTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCCccccCCHHHHHHHHHhhcC
Confidence            5 99999999999999999976

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.92  E-value=1e-24  Score=184.42  Aligned_cols=155  Identities=23%  Similarity=0.329  Sum_probs=136.6

Q ss_pred             ccchhhhhhhhHhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhhcCCCccccc--cchhhcc
Q 020075           59 VVSSEIASAIHQVIVNGSALLACSPQQPTLQQLPPDPKNPEIGSEHDIESDCEIVEIDAVELLAEHIHFCD--ICGKGFK  136 (331)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~h~~~~~~~C~--~C~k~F~  136 (331)
                      ..........|++.|.++++|.|.                 +..|++.|.....|..|+++|.++++|.|.  .|++.|.
T Consensus        23 ~f~~~~~L~~H~~~h~~~~~~~C~-----------------~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~   85 (190)
T 1tf6_A           23 AYNKNWKLQAHLCKHTGEKPFPCK-----------------EEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFT   85 (190)
T ss_dssp             BCSSHHHHHHHHHHHHCCCSSCCS-----------------STTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEES
T ss_pred             hhCCHHHHHHHHHhcCCCCCccCC-----------------CCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccC
Confidence            344556678899999999988884                 247899999999999999999999999999  8999999


Q ss_pred             CHHHHHHHH-HHhc-CCCCCchhccCCcccccCCCccceeC--CCCCCccccccCCccccccHHHHhcccccccCCCCcc
Q 020075          137 RDANLRMHM-RAHG-DEFKTPQALAKPEKGSVSGRKTRFSC--PYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYS  212 (331)
Q Consensus       137 ~~~~L~~H~-~~H~-~~~~~~~~~~~~~~c~~C~~~~~~~C--~~c~~~~~~~h~~~k~f~~~~~l~~H~~~h~~~k~~~  212 (331)
                      +...|..|+ +.|. +.                   .+|.|  ..|+          +.|.....|+.|++.|++++||.
T Consensus        86 ~~~~l~~H~~~~h~~~~-------------------~~~~C~~~~C~----------k~f~~~~~L~~H~~~H~~~~~~~  136 (190)
T 1tf6_A           86 TKANMKKHFNRFHNIKI-------------------CVYVCHFENCG----------KAFKKHNQLKVHQFSHTQQLPYE  136 (190)
T ss_dssp             CHHHHHHHHHTTSSTTT-------------------SCCEECSSSSC----------EECSSHHHHHHHHGGGSSSCSSB
T ss_pred             CHHHHHHHHHHhcCCCc-------------------ceeeCCCCCCc----------cccCCHHHHHHHHHHhCCCCCcc
Confidence            999999999 5663 44                   56888  7788          99999999999999999999999


Q ss_pred             CCC--CCCCccCChhHhHHHhh-ccCCCceec---c-CCcccCCHHHHHHHHHhhcCC
Q 020075          213 CDK--CHKKSFSVVSDLRSHYK-NCGESRWKC---S-CGTSFSRKDKLFGHVALFEGH  263 (331)
Q Consensus       213 C~~--C~k~~f~~~~~L~~H~~-H~~ekp~~C---~-C~k~F~~~~~L~~H~~~H~~e  263 (331)
                      |++  |++ .|.++..|..|++ |++   |.|   . |++.|.+...|..|+++|+|+
T Consensus       137 C~~~~C~k-~F~~~~~L~~H~~~H~~---~~C~~~~~C~~~f~~~~~l~~H~~~h~~e  190 (190)
T 1tf6_A          137 CPHEGCDK-RFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLYLKHVAECHQD  190 (190)
T ss_dssp             CCSSSCCC-BCSSHHHHHHHHTSSCS---CCCCSTTTCCCCCSCHHHHHHHHTTCC--
T ss_pred             CCCCCCCc-hhcCHHHHHHHHHHhCC---CcCCCCCcCCCccccHHHHHHHHHhhcCC
Confidence            988  999 9999999999999 998   666   4 999999999999999999875

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.91  E-value=1.1e-25  Score=179.29  Aligned_cols=107  Identities=20%  Similarity=0.323  Sum_probs=85.1

Q ss_pred             hhhhhhhhcCCCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCcccc
Q 020075          113 VEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRAL  192 (331)
Q Consensus       113 l~~h~~~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f  192 (331)
                      +..|.++|.|+++|+|++||+.|.....|..|+++|+++                   ++|.|.+|+          +.|
T Consensus        10 ~~h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~-------------------k~~~C~~C~----------k~F   60 (133)
T 2lt7_A           10 DDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWE-------------------KKYPCRYCE----------KVF   60 (133)
T ss_dssp             SSEEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCC-------------------SCEECSSSS----------CEE
T ss_pred             HhhceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCC-------------------CCeeCCccC----------eec
Confidence            445677899999999999999999999999999999998                   567777777          777


Q ss_pred             ccHHHHhcccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCC------Cceecc-CCcccCC
Q 020075          193 KSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGE------SRWKCS-CGTSFSR  249 (331)
Q Consensus       193 ~~~~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~e------kp~~C~-C~k~F~~  249 (331)
                      .....|..|+++|++++||.|++|++ .|.++..|..|++ |+++      ++|.|. |++.|.+
T Consensus        61 ~~~~~L~~H~~~H~~~k~~~C~~C~k-~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~  124 (133)
T 2lt7_A           61 PLAEYRTKHEIHHTGERRYQCLACGK-SFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIR  124 (133)
T ss_dssp             SSHHHHHHHHHHHHTCCCEEESSSCC-EESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCC
T ss_pred             ccccchhhhccccCCCccccCCCCCC-CcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhh
Confidence            77777777777777777777777777 7777777777777 6554      347777 7777753

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.91  E-value=3.2e-24  Score=168.29  Aligned_cols=114  Identities=28%  Similarity=0.525  Sum_probs=104.7

Q ss_pred             cCCCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHHhc
Q 020075          121 LAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKN  200 (331)
Q Consensus       121 ~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~  200 (331)
                      +++++|+|.+|++.|.....|..|+++|.++                   ++|.|++|+          +.|.....|..
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-------------------~~~~C~~C~----------~~f~~~~~l~~   53 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGE-------------------KPFECPKCG----------KCYFRKENLLE   53 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSC-------------------CSCBCTTTC----------CBCSSHHHHHH
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCC-------------------CCeECCCCC----------chhcCHHHHHH
Confidence            4688999999999999999999999999998                   678888888          89999999999


Q ss_pred             cccc---ccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHh-hcCCC
Q 020075          201 HFKR---SHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVAL-FEGHM  264 (331)
Q Consensus       201 H~~~---h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~-H~~e~  264 (331)
                      |++.   +.++++|.|++|++ .|.....|..|++ |++++||.|. |++.|.+...|..|++. |.++.
T Consensus        54 H~~~~~~~~~~~~~~C~~C~~-~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~  122 (124)
T 2dlq_A           54 HEARNCMNRSEQVFTCSVCQE-TFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS  122 (124)
T ss_dssp             HHHHCCCCSCCCCEECSSSCC-EESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSCSS
T ss_pred             HHhhhhcCCCCCCeECCCCCC-ccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCCCC
Confidence            9985   56789999999999 9999999999999 9999999999 99999999999999985 76653

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.91  E-value=1.7e-24  Score=168.65  Aligned_cols=110  Identities=27%  Similarity=0.585  Sum_probs=104.7

Q ss_pred             cCCCcccccc--chhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCC--CCCCccccccCCccccccHH
Q 020075          121 LAEHIHFCDI--CGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCP--YDGCNRNKKHKKFRALKSVI  196 (331)
Q Consensus       121 ~~~~~~~C~~--C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~--~c~~~~~~~h~~~k~f~~~~  196 (331)
                      +++++|.|.+  |++.|.....|..|+++|.++                   ++|.|.  .|+          +.|....
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-------------------~~~~C~~~~C~----------~~f~~~~   52 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGE-------------------KPYQCDFKDCE----------RRFSRSD   52 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTT-------------------CCEECCSTTCC----------CEESSHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCC-------------------CCccCCCCCCc----------CccCCHH
Confidence            4688999997  999999999999999999988                   678888  688          9999999


Q ss_pred             HHhcccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceec--c-CCcccCCHHHHHHHHHhh
Q 020075          197 CVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKC--S-CGTSFSRKDKLFGHVALF  260 (331)
Q Consensus       197 ~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C--~-C~k~F~~~~~L~~H~~~H  260 (331)
                      .|..|++.|+++++|.|++|++ .|.+...|..|++ |++++||.|  + |++.|.+...|..|+++|
T Consensus        53 ~l~~H~~~h~~~~~~~C~~C~~-~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           53 QLKRHQRRHTGVKPFQCKTCQR-KFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHHHHHHHCCCCEECTTTCC-EESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             HHHHHHHHcCCCCCccCCccCc-hhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            9999999999999999999999 9999999999999 999999999  8 999999999999999987

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.90  E-value=2e-24  Score=169.67  Aligned_cols=114  Identities=24%  Similarity=0.466  Sum_probs=101.6

Q ss_pred             CCCccccc--cchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHHh
Q 020075          122 AEHIHFCD--ICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVK  199 (331)
Q Consensus       122 ~~~~~~C~--~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~  199 (331)
                      ++++|.|+  .|++.|.+...|..|+++| ++                   ++|.|.+|+          +.|.....|.
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~-------------------~~~~C~~C~----------~~f~~~~~l~   51 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GP-------------------RVHVCAECG----------KAFVESSKLK   51 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG-SC-------------------CCEECTTTC----------CEESSHHHHH
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc-CC-------------------CCeECCCCC----------chhCCHHHHH
Confidence            36799999  8999999999999999999 65                   678899998          9999999999


Q ss_pred             cccccccCCCCccCCC--CCCCccCChhHhHHHhh-ccCCCceec--c-CCcccCCHHHHHHHHHhhcCCCCc
Q 020075          200 NHFKRSHCPKMYSCDK--CHKKSFSVVSDLRSHYK-NCGESRWKC--S-CGTSFSRKDKLFGHVALFEGHMPE  266 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~--C~k~~f~~~~~L~~H~~-H~~ekp~~C--~-C~k~F~~~~~L~~H~~~H~~e~p~  266 (331)
                      .|++.|+++++|.|.+  |++ .|.+...|..|++ |++++||.|  . |++.|.+...|..|+++|++++++
T Consensus        52 ~H~~~h~~~~~~~C~~~~C~~-~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           52 RHQLVHTGEKPFQCTFEGCGK-RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             HHGGGTSCCCCEECCSTTCCC-EESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             HHHHHcCCCCCeeCCCCCCcC-ccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence            9999999999999986  999 9999999999999 999999999  7 999999999999999999999876

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.90  E-value=2.8e-24  Score=175.60  Aligned_cols=127  Identities=21%  Similarity=0.388  Sum_probs=113.4

Q ss_pred             cCCCccccccchhhccCHHHHHHHHHH-hcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHHh
Q 020075          121 LAEHIHFCDICGKGFKRDANLRMHMRA-HGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVK  199 (331)
Q Consensus       121 ~~~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~  199 (331)
                      .+..+|.|.+|++.|.+...|..|++. |.+.        .+.....|   ..|.|.+|+          +.|.....|.
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~--------~~~~~~~~---~~~~C~~C~----------~~f~~~~~l~   79 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGG--------PEQNNHVC---YWEECPREG----------KSFKAKYKLV   79 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCC--------TTCSSCCC---CBTTCTTSS----------CCCSSHHHHH
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhhcCCC--------cccCCccc---cccCCCCcc----------cccCCHHHHH
Confidence            347799999999999999999999998 7765        33222222   247899999          9999999999


Q ss_pred             cccccccCCCCccCCC--CCCCccCChhHhHHHhh-ccCCCceecc---CCcccCCHHHHHHHHHhhcCCCCccCc
Q 020075          200 NHFKRSHCPKMYSCDK--CHKKSFSVVSDLRSHYK-NCGESRWKCS---CGTSFSRKDKLFGHVALFEGHMPEVEV  269 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~--C~k~~f~~~~~L~~H~~-H~~ekp~~C~---C~k~F~~~~~L~~H~~~H~~e~p~~c~  269 (331)
                      .|++.|+++++|.|.+  |++ .|.....|..|++ |++++||.|.   |++.|.+...|..|+++|++++||.|.
T Consensus        80 ~H~~~h~~~~~~~C~~~~C~~-~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A           80 NHIRVHTGEKPFPCPFPGCGK-IFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             HHTHHHHCCCSEECSCTTTCC-EESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             HHHHhcCCCCcccCCcCCCCC-ccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            9999999999999998  999 9999999999999 9999999997   999999999999999999999999985

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.90  E-value=5.2e-24  Score=173.84  Aligned_cols=134  Identities=25%  Similarity=0.405  Sum_probs=121.0

Q ss_pred             CCccccccchhhccCHHHHHHHHH---HhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHHh
Q 020075          123 EHIHFCDICGKGFKRDANLRMHMR---AHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVK  199 (331)
Q Consensus       123 ~~~~~C~~C~k~F~~~~~L~~H~~---~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~  199 (331)
                      |.+|.|+.|++.|.+...|..|++   +|.++        ++|.|..|+      |..|+          +.|.....|.
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~--------~~~~C~~c~------C~~c~----------~~f~~~~~l~   56 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGER--------KEFVCHWGG------CSREL----------RPFKAQYMLV   56 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTSSSCS--------SCCCCCBTT------CTTTT----------CCCSSHHHHH
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhccCCCC--------cceeCCCCC------ccchh----------hhhhhHHHHH
Confidence            458999999999999999999998   67776        777777664      66677          8999999999


Q ss_pred             cccccccCCCCccCCC--CCCCccCChhHhHHHhh-ccCCCceecc---CCcccCCHHHHHHHH-HhhcCCCCccCcc--
Q 020075          200 NHFKRSHCPKMYSCDK--CHKKSFSVVSDLRSHYK-NCGESRWKCS---CGTSFSRKDKLFGHV-ALFEGHMPEVEVD--  270 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~--C~k~~f~~~~~L~~H~~-H~~ekp~~C~---C~k~F~~~~~L~~H~-~~H~~e~p~~c~~--  270 (331)
                      .|++.|+++++|.|++  |++ .|.+...|..|++ |++++||.|.   |++.|.+...|..|+ ++|++++||.|..  
T Consensus        57 ~H~~~h~~~~~~~C~~~~C~~-~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~  135 (155)
T 2gli_A           57 VHMRRHTGEKPHKCTFEGCRK-SYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPG  135 (155)
T ss_dssp             HHTHHHHCCCCCCCCSTTCCC-CCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTT
T ss_pred             HHHHhcCCCCCccCCCCCCCC-cccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCC
Confidence            9999999999999985  999 9999999999999 9999999997   999999999999999 8999999999988  


Q ss_pred             ccccCCccccc
Q 020075          271 EKMKHHDQDVV  281 (331)
Q Consensus       271 ~~~~~~~~~~~  281 (331)
                      |...+.....+
T Consensus       136 C~~~f~~~~~L  146 (155)
T 2gli_A          136 CTKRYTDPSSL  146 (155)
T ss_dssp             TCCEESSHHHH
T ss_pred             CccccCCHHHH
Confidence            99887766544

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.86  E-value=5.6e-23  Score=163.69  Aligned_cols=94  Identities=22%  Similarity=0.413  Sum_probs=87.6

Q ss_pred             cceeCCCCCCccccccCCccccccHHHHhcccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccC
Q 020075          171 TRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFS  248 (331)
Q Consensus       171 ~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~  248 (331)
                      ++|.|.+|+          +.|.....|+.|+++|++++||.|++|++ .|.++..|..|++ |++++||.|. |++.|.
T Consensus        21 k~y~C~~C~----------k~F~~~~~L~~H~~~H~~~k~~~C~~C~k-~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~   89 (133)
T 2lt7_A           21 VYYICIVCK----------RSYVCLTSLRRHFNIHSWEKKYPCRYCEK-VFPLAEYRTKHEIHHTGERRYQCLACGKSFI   89 (133)
T ss_dssp             EEEEETTTC----------CEESCHHHHHHHHHHHHCCSCEECSSSSC-EESSHHHHHHHHHHHHTCCCEEESSSCCEES
T ss_pred             cCeECCCCC----------CCcCCHHHHHHHHHHcCCCCCeeCCccCe-ecccccchhhhccccCCCccccCCCCCCCcC
Confidence            789999999          99999999999999999999999999999 9999999999999 9999999999 999999


Q ss_pred             CHHHHHHHHHhhcCCCC------ccCccccccC
Q 020075          249 RKDKLFGHVALFEGHMP------EVEVDEKMKH  275 (331)
Q Consensus       249 ~~~~L~~H~~~H~~e~p------~~c~~~~~~~  275 (331)
                      +...|..|+++|++++|      |.|..|...+
T Consensus        90 ~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~  122 (133)
T 2lt7_A           90 NYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQ  122 (133)
T ss_dssp             SHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSC
T ss_pred             CHHHHHHHhHHhcCCCCCCCCCCeecCCCCchh
Confidence            99999999999988765      6677776544

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.85  E-value=2.5e-21  Score=158.01  Aligned_cols=119  Identities=22%  Similarity=0.314  Sum_probs=110.0

Q ss_pred             CCCCCCCCCCCCCCCCchhhhhhhhh-hcCCCc--------cccccchhhccCHHHHHHHHHHhcCCCCCchhccCCccc
Q 020075           94 DPKNPEIGSEHDIESDCEIVEIDAVE-LLAEHI--------HFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKG  164 (331)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~l~~h~~~-h~~~~~--------~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c  164 (331)
                      ....+.|..|.+.|.....|..|++. |.+..+        |.|.+|++.|.....|..|+++|+++             
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-------------   88 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE-------------   88 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCC-------------
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCC-------------
Confidence            34567788999999999999999997 877765        89999999999999999999999998             


Q ss_pred             ccCCCccceeCCC--CCCccccccCCccccccHHHHhcccccccCCCCccCCC--CCCCccCChhHhHHHhh-ccCCCce
Q 020075          165 SVSGRKTRFSCPY--DGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDK--CHKKSFSVVSDLRSHYK-NCGESRW  239 (331)
Q Consensus       165 ~~C~~~~~~~C~~--c~~~~~~~h~~~k~f~~~~~l~~H~~~h~~~k~~~C~~--C~k~~f~~~~~L~~H~~-H~~ekp~  239 (331)
                            ++|.|.+  |+          +.|.....|.+|++.|+++++|.|.+  |++ .|.++..|..|++ |++++||
T Consensus        89 ------~~~~C~~~~C~----------~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k-~f~~~~~L~~H~~~H~~~k~~  151 (155)
T 2rpc_A           89 ------KPFPCPFPGCG----------KIFARSENLKIHKRTHTGEKPFKCEFEGCDR-RFANSSDRKKHMHVHTSDKSG  151 (155)
T ss_dssp             ------CSEECSCTTTC----------CEESCHHHHHHHHTTTCSSCSBCCSSTTCCC-CBSSHHHHHHSSTTTTSCCCS
T ss_pred             ------CcccCCcCCCC----------CccCCHHHHHHHHHhhCCCCCccCCCCCCCC-ccCCHHHHHHHHHHhcCCCCC
Confidence                  6788887  88          99999999999999999999999997  999 9999999999999 9999999


Q ss_pred             ecc
Q 020075          240 KCS  242 (331)
Q Consensus       240 ~C~  242 (331)
                      .|.
T Consensus       152 ~c~  154 (155)
T 2rpc_A          152 PSS  154 (155)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            985

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.83  E-value=1.4e-20  Score=143.42  Aligned_cols=90  Identities=33%  Similarity=0.673  Sum_probs=81.0

Q ss_pred             cCCCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHHhc
Q 020075          121 LAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKN  200 (331)
Q Consensus       121 ~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~  200 (331)
                      .++++|.|.+|++.|.....|..|+++|+++                                                 
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-------------------------------------------------   43 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDE-------------------------------------------------   43 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHCCS-------------------------------------------------
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcCCC-------------------------------------------------
Confidence            3477899999999999999999999988775                                                 


Q ss_pred             ccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccC
Q 020075          201 HFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVE  268 (331)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c  268 (331)
                              ++|.|.+|++ .|.....|..|++ |++++||.|. |++.|.+...|..|+++|++++||..
T Consensus        44 --------~~~~C~~C~~-~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           44 --------RPYTCDICHK-AFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             --------CCCBCSSSCC-BCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             --------CCcCCCCccc-hhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHHHHHhCCCCCCcC
Confidence                    6788889999 9999999999999 9999999999 99999999999999999999998864

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.82  E-value=5.1e-21  Score=150.10  Aligned_cols=113  Identities=20%  Similarity=0.413  Sum_probs=99.4

Q ss_pred             CCCCC--CCCCCCCCchhhhhhhhhhcCCCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCcccee
Q 020075           97 NPEIG--SEHDIESDCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFS  174 (331)
Q Consensus        97 ~~~~~--~~~~~~~~~~~l~~h~~~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~  174 (331)
                      .+.|.  .|.+.|.....|..|++.| ++++|.|.+|++.|.....|..|+++|+++                   ++|.
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-------------------~~~~   64 (124)
T 1ubd_C            5 TIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGE-------------------KPFQ   64 (124)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCC-------------------CCEE
T ss_pred             cccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCC-------------------CCee
Confidence            34455  8999999999999999999 899999999999999999999999999998                   6788


Q ss_pred             CCC--CCCccccccCCccccccHHHHhcccccccCCCCccCC--CCCCCccCChhHhHHHhh-ccCCCcee
Q 020075          175 CPY--DGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCD--KCHKKSFSVVSDLRSHYK-NCGESRWK  240 (331)
Q Consensus       175 C~~--c~~~~~~~h~~~k~f~~~~~l~~H~~~h~~~k~~~C~--~C~k~~f~~~~~L~~H~~-H~~ekp~~  240 (331)
                      |.+  |+          +.|.....|..|++.|+++++|.|+  .|++ .|.++..|..|++ |++++++.
T Consensus        65 C~~~~C~----------~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~-~f~~~~~L~~H~~~H~~~k~~q  124 (124)
T 1ubd_C           65 CTFEGCG----------KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNK-KFAQSTNLKSHILTHAKAKNNQ  124 (124)
T ss_dssp             CCSTTCC----------CEESCHHHHHHHHHHHHCCCCCCCCSTTCCC-CCSSTTTTHHHHHHHC------
T ss_pred             CCCCCCc----------CccCCHHHHHHHHHHhCCCCceECCCCCCCC-ccCCHHHHHHHHHHHcccccCC
Confidence            876  88          9999999999999999999999996  5999 9999999999999 99999863

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.82  E-value=2.4e-20  Score=145.04  Aligned_cols=102  Identities=23%  Similarity=0.376  Sum_probs=97.4

Q ss_pred             CCCCCCCCchhhhhhhhhhcCCCccccc--cchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCC
Q 020075          102 SEHDIESDCEIVEIDAVELLAEHIHFCD--ICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDG  179 (331)
Q Consensus       102 ~~~~~~~~~~~l~~h~~~h~~~~~~~C~--~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~  179 (331)
                      .|++.|.....|..|++.|.++++|.|.  .|++.|.+...|..|+++|+++                   ++|.|.+|+
T Consensus        13 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-------------------~~~~C~~C~   73 (119)
T 2jp9_A           13 GCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV-------------------KPFQCKTCQ   73 (119)
T ss_dssp             TSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCC-------------------CCEECTTTC
T ss_pred             CCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCC-------------------CCccCCccC
Confidence            4999999999999999999999999999  7999999999999999999998                   678899998


Q ss_pred             CccccccCCccccccHHHHhcccccccCCCCccC--CCCCCCccCChhHhHHHhh-c
Q 020075          180 CNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSC--DKCHKKSFSVVSDLRSHYK-N  233 (331)
Q Consensus       180 ~~~~~~h~~~k~f~~~~~l~~H~~~h~~~k~~~C--~~C~k~~f~~~~~L~~H~~-H  233 (331)
                                +.|.....|+.|++.|+++++|.|  +.|++ .|.++..|..|++ |
T Consensus        74 ----------~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~-~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           74 ----------RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQK-KFARSDELVRHHNMH  119 (119)
T ss_dssp             ----------CEESCHHHHHHHHHHHHTCCCEECCSTTCCC-EESSHHHHHHHHHTC
T ss_pred             ----------chhCCHHHHHHHHHHhcCCCCeeCCCCCCcc-ccCCHHHHHHHHhcC
Confidence                      999999999999999999999999  89999 9999999999998 6

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.81  E-value=1.2e-20  Score=144.34  Aligned_cols=94  Identities=15%  Similarity=0.270  Sum_probs=84.2

Q ss_pred             hhhhhcCCCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccH
Q 020075          116 DAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSV  195 (331)
Q Consensus       116 h~~~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~  195 (331)
                      +++.|.++++|.|.+|++.|.....|..|+++|.                                              
T Consensus         7 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~----------------------------------------------   40 (107)
T 1wjp_A            7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR----------------------------------------------   40 (107)
T ss_dssp             CCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH----------------------------------------------
T ss_pred             cCcccCCCcCeECCCCCCccCCHHHHHHHHHHCC----------------------------------------------
Confidence            4567788999999999999999999999998873                                              


Q ss_pred             HHHhcccccccCCCCccCCCCCCCccCChhHhHHHhhccCCCceecc-CCcccCCHHHHHHHHH-hhcCCCCccCc
Q 020075          196 ICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYKNCGESRWKCS-CGTSFSRKDKLFGHVA-LFEGHMPEVEV  269 (331)
Q Consensus       196 ~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~H~~ekp~~C~-C~k~F~~~~~L~~H~~-~H~~e~p~~c~  269 (331)
                                   ++|.|.+|++ .|.....|..|++|++++||.|. |++.|.+...|..|++ +|++++||.+.
T Consensus        41 -------------~~~~C~~C~~-~f~~~~~l~~H~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           41 -------------NAAVCPYCSL-RFFSPELKQEHESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             -------------HSBCCTTTCC-CBSSHHHHHHHHHHCSTGGGEEGGGTEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             -------------CCccCCCCCC-ccCCHHHHHHHHHcCCCCCccCccccchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence                         4588888999 99999999999889999999999 9999999999999997 89999998875

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.81  E-value=4.8e-20  Score=144.24  Aligned_cols=111  Identities=23%  Similarity=0.345  Sum_probs=101.7

Q ss_pred             CCCCCCCCCCCCCchhhhhhhhhhcCCCccccccchhhccCHHHHHHHHHHh---cCCCCCchhccCCcccccCCCccce
Q 020075           97 NPEIGSEHDIESDCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAH---GDEFKTPQALAKPEKGSVSGRKTRF  173 (331)
Q Consensus        97 ~~~~~~~~~~~~~~~~l~~h~~~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H---~~~~~~~~~~~~~~~c~~C~~~~~~  173 (331)
                      .+.|..|.+.|.....|..|++.|.++++|.|.+|++.|.+...|..|++.|   .++                   .+|
T Consensus         7 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~-------------------~~~   67 (124)
T 2dlq_A            7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE-------------------QVF   67 (124)
T ss_dssp             SCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCC-------------------CCE
T ss_pred             CCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCC-------------------CCe
Confidence            4556689999999999999999999999999999999999999999999974   444                   678


Q ss_pred             eCCCCCCccccccCCccccccHHHHhcccccccCCCCccCCCCCCCccCChhHhHHHhh--ccCCC
Q 020075          174 SCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK--NCGES  237 (331)
Q Consensus       174 ~C~~c~~~~~~~h~~~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~--H~~ek  237 (331)
                      .|.+|+          +.|.....|..|++.|+++++|.|++|++ .|.++..|..|++  |.+++
T Consensus        68 ~C~~C~----------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~-~f~~~~~l~~H~~~~H~~~~  122 (124)
T 2dlq_A           68 TCSVCQ----------ETFRRRMELRLHMVSHTGEMPYKCSSCSQ-QFMQKKDLQSHMIKLHSGPS  122 (124)
T ss_dssp             ECSSSC----------CEESSHHHHHHHHHHHSSSCSEECSSSCC-EESSHHHHHHHHHHTSSCSS
T ss_pred             ECCCCC----------CccCCHHHHHHHHHHcCCCCCccCCCccc-hhCCHHHHHHHHHHHCCCCC
Confidence            999999          99999999999999999999999999999 9999999999997  77754

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.81  E-value=2e-20  Score=139.88  Aligned_cols=61  Identities=23%  Similarity=0.416  Sum_probs=54.6

Q ss_pred             ccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCc
Q 020075          205 SHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPE  266 (331)
Q Consensus       205 h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~  266 (331)
                      |+++++|.|++|++ .|.....|..|++ |+++++|.|. |++.|.+...|..|+++|+++++.
T Consensus        31 h~~~~~~~C~~C~~-~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~p   93 (96)
T 2dmd_A           31 HTGVKPYKCKTCDY-AAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGP   93 (96)
T ss_dssp             CCCCCSEECSSSCC-EESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHHHTTCCSCCCC
T ss_pred             cCCCCCEeCCCCCC-ccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHhcCCCCC
Confidence            33337899999999 9999999999999 9999999999 999999999999999999988754

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.81  E-value=2.1e-20  Score=138.01  Aligned_cols=86  Identities=28%  Similarity=0.617  Sum_probs=71.3

Q ss_pred             CCCccccc--cchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHHh
Q 020075          122 AEHIHFCD--ICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVK  199 (331)
Q Consensus       122 ~~~~~~C~--~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~  199 (331)
                      |+++|.|.  .|++.|.....|..|+++|.++                                                
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~------------------------------------------------   32 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQ------------------------------------------------   32 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCC------------------------------------------------
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCC------------------------------------------------
Confidence            35677887  4888888888888887777665                                                


Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCC
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMP  265 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p  265 (331)
                               ++|.|.+|++ .|.....|..|++ |++++||.|. |++.|.+...|..|+++|+++++
T Consensus        33 ---------~~~~C~~C~~-~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~k~   90 (90)
T 1a1h_A           33 ---------KPFQCRICMR-NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKD   90 (90)
T ss_dssp             ---------CCEECTTTCC-EESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHGGGGC---
T ss_pred             ---------CCccCCCCCc-ccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHHHHHhcccCC
Confidence                     7788999999 9999999999999 9999999999 99999999999999999998763

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.81  E-value=1.1e-20  Score=146.35  Aligned_cols=101  Identities=16%  Similarity=0.185  Sum_probs=84.7

Q ss_pred             chhhhhhhhhhcCCCccccccchhhccCHHHHHHHHHH--hcCCCCCchhccCCcccccCCCccceeCCCCCCccccccC
Q 020075          110 CEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRA--HGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHK  187 (331)
Q Consensus       110 ~~~l~~h~~~h~~~~~~~C~~C~k~F~~~~~L~~H~~~--H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~  187 (331)
                      ...|..|+++|.++++|.|.+|++.|.....|..|+++  |.+.                                    
T Consensus         4 ~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~------------------------------------   47 (115)
T 2dmi_A            4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRD------------------------------------   47 (115)
T ss_dssp             CCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBC------------------------------------
T ss_pred             chhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCcccc------------------------------------
Confidence            34588999999999999999999999999999999998  4332                                    


Q ss_pred             CccccccHHHHhcccccccCCCCccCCCCCCCcc--CChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCC
Q 020075          188 KFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSF--SVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGH  263 (331)
Q Consensus       188 ~~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~~f--~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e  263 (331)
                        +                  ..+.|.+|++ .|  ..+..|..|++ |++++||.|. |++.|.+...|..|+++|+..
T Consensus        48 --~------------------~~~~C~~C~~-~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~  106 (115)
T 2dmi_A           48 --D------------------NHETDNNNPK-RWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHY  106 (115)
T ss_dssp             --S------------------CCCCCCCCCS-CCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTT
T ss_pred             --C------------------CCccCCCCCc-ccccccHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCCc
Confidence              0                  2245888888 78  88889999999 9999999999 999999999999999988766


Q ss_pred             CCcc
Q 020075          264 MPEV  267 (331)
Q Consensus       264 ~p~~  267 (331)
                      ....
T Consensus       107 ~~~~  110 (115)
T 2dmi_A          107 QKVS  110 (115)
T ss_dssp             TCSC
T ss_pred             ccCC
Confidence            5443

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.79  E-value=9.3e-20  Score=131.99  Aligned_cols=54  Identities=35%  Similarity=0.723  Sum_probs=50.0

Q ss_pred             CCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcC
Q 020075          208 PKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEG  262 (331)
Q Consensus       208 ~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~  262 (331)
                      +++|.|..|++ .|..+..|..|++ |++++||.|. |++.|.+...|..|+++|+|
T Consensus        27 ~~~~~C~~C~~-~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           27 TRPYPCQYCGK-RFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             CCCEECSSSCC-EESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHHC-
T ss_pred             CCCeeCCcCCh-hhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhhCC
Confidence            37799999999 9999999999999 9999999999 99999999999999999975

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.77  E-value=3.9e-19  Score=136.38  Aligned_cols=85  Identities=27%  Similarity=0.562  Sum_probs=77.6

Q ss_pred             hhcCCCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHH
Q 020075          119 ELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICV  198 (331)
Q Consensus       119 ~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l  198 (331)
                      .|+++++|.| .|++.|.....|..|++.|.++                                               
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~-----------------------------------------------   35 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGL-----------------------------------------------   35 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCC-----------------------------------------------
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCC-----------------------------------------------
Confidence            5678889999 8999999999999999888775                                               


Q ss_pred             hcccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcC
Q 020075          199 KNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEG  262 (331)
Q Consensus       199 ~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~  262 (331)
                                ++|.|.+|++ .|.....|..|++ |+++++|.|. |++.|.+...|..|+++|+.
T Consensus        36 ----------~~~~C~~C~~-~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           36 ----------RPYGCGVCGK-KFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTK   90 (110)
T ss_dssp             ----------CSEECTTTSC-EESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHHHHHHHHH
T ss_pred             ----------cCccCCCCCc-ccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHHHHHHccc
Confidence                      6788999999 9999999999999 9999999999 99999999999999999863

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.77  E-value=1.8e-19  Score=122.52  Aligned_cols=56  Identities=21%  Similarity=0.538  Sum_probs=53.8

Q ss_pred             CCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCC
Q 020075          208 PKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHM  264 (331)
Q Consensus       208 ~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~  264 (331)
                      ||||.|++||+ .|..++.|..|++ |+|++||.|. ||++|.+.+.|..|+++|+|++
T Consensus         2 EKpy~C~~C~k-~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGK-TYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCC-EESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCC-EeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            69999999999 9999999999999 9999999999 9999999999999999999874

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=5.1e-19  Score=131.90  Aligned_cols=85  Identities=34%  Similarity=0.645  Sum_probs=71.7

Q ss_pred             cCCCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHHhc
Q 020075          121 LAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKN  200 (331)
Q Consensus       121 ~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~  200 (331)
                      .++++|.|.+|++.|.....|..|+++|+++                                                 
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-------------------------------------------------   33 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGE-------------------------------------------------   33 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSS-------------------------------------------------
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCC-------------------------------------------------
Confidence            4567788888888888888888888777665                                                 


Q ss_pred             ccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCC--Cceecc-CCcccCCHHHHHHHHH-hhcCC
Q 020075          201 HFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGE--SRWKCS-CGTSFSRKDKLFGHVA-LFEGH  263 (331)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~e--kp~~C~-C~k~F~~~~~L~~H~~-~H~~e  263 (331)
                              ++|.|.+|++ .|.....|..|++ |+++  +||.|. |++.|.+...|..|++ +|.++
T Consensus        34 --------~~~~C~~C~~-~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           34 --------KPYSCPVCGL-RFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             --------CSEECSSSCC-EESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHHHHHTSCCC
T ss_pred             --------CCCcCCCCCC-ccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHHHHHhcCCC
Confidence                    6788889999 9999999999999 8886  899999 9999999999999986 67764

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.72  E-value=9.3e-18  Score=126.16  Aligned_cols=82  Identities=35%  Similarity=0.805  Sum_probs=72.5

Q ss_pred             CCcccccc--chhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHHhc
Q 020075          123 EHIHFCDI--CGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKN  200 (331)
Q Consensus       123 ~~~~~C~~--C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~  200 (331)
                      .++|.|.+  |++.|.....|..|+++|+++                                                 
T Consensus        13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-------------------------------------------------   43 (100)
T 2ebt_A           13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGE-------------------------------------------------   43 (100)
T ss_dssp             CCCEECCSSSCCCEESCHHHHHHHHHHHSCC-------------------------------------------------
T ss_pred             CcceEcCCCCCCCcccCHHHHHHHHHHhCCC-------------------------------------------------
Confidence            66888886  888888888888888888775                                                 


Q ss_pred             ccccccCCCCccCC--CCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcC
Q 020075          201 HFKRSHCPKMYSCD--KCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEG  262 (331)
Q Consensus       201 H~~~h~~~k~~~C~--~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~  262 (331)
                              ++|.|.  .|++ .|.....|..|++ |++++||.|. |++.|.+...|..|+++|++
T Consensus        44 --------~~~~C~~~~C~~-~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           44 --------KPYKCTWEGCDW-RFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             --------CCEECCSSSCCC-EESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHHHHHHHHHCC
T ss_pred             --------CCeeCCCCCCCC-ccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHHHHHHHHhCC
Confidence                    667775  5999 9999999999999 9999999999 99999999999999999974

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=4.6e-17  Score=116.56  Aligned_cols=68  Identities=35%  Similarity=0.694  Sum_probs=63.6

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccC
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVE  268 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c  268 (331)
                      .+.+.+.++++|.|++|++ .|.....|..|++ |++++||.|. |++.|.+...|..|+++|++++||.|
T Consensus         8 ~~~~~~~~~~~~~C~~C~~-~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A            8 RSEWQQRERRRYKCDECGK-SFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCSCCCCSCSSBCSSSCC-BCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCcCcCCCCCCEECCCCCc-ccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            3445667789999999999 9999999999999 9999999999 99999999999999999999999987

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.68  E-value=1.2e-16  Score=121.40  Aligned_cols=91  Identities=25%  Similarity=0.299  Sum_probs=80.7

Q ss_pred             CCCCCCCCCCCCCCCCCchhhhhhhhhhcCCCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccc
Q 020075           93 PDPKNPEIGSEHDIESDCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTR  172 (331)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~l~~h~~~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~  172 (331)
                      .....+.|..|.+.|.....|..|++.|.++++|.|.+|++.|.....|..|+++|+++                     
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~---------------------   71 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKE---------------------   71 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCC---------------------
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCC---------------------
Confidence            34456778899999999999999999999999999999999999999999999888776                     


Q ss_pred             eeCCCCCCccccccCCccccccHHHHhcccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceec
Q 020075          173 FSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKC  241 (331)
Q Consensus       173 ~~C~~c~~~~~~~h~~~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C  241 (331)
                                                          ++|.|.+|++ .|.....|..|++ |++++||.+
T Consensus        72 ------------------------------------~~~~C~~C~~-~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           72 ------------------------------------KPFKCQECGK-GFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             ------------------------------------CTTSCSSSCC-CCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             ------------------------------------CCeECCCcCC-cccCHHHHHHHHHHhCCCCCCcC
Confidence                                                6688888888 8888888999988 888888764

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.67  E-value=3.5e-17  Score=111.11  Aligned_cols=57  Identities=33%  Similarity=0.643  Sum_probs=47.4

Q ss_pred             CCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHHhccc
Q 020075          123 EHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHF  202 (331)
Q Consensus       123 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~H~  202 (331)
                      ||||+|.+||+.|...+.|..|+++|+|+                                                   
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~e---------------------------------------------------   30 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGY---------------------------------------------------   30 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTC---------------------------------------------------
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCC---------------------------------------------------
Confidence            78888888888888888888888888887                                                   


Q ss_pred             ccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCC
Q 020075          203 KRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGES  237 (331)
Q Consensus       203 ~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ek  237 (331)
                            +||.|++||+ .|..++.|..|++ |+|++
T Consensus        31 ------kp~~C~~C~k-~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C           31 ------RPRSCPECGK-CFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             ------CCEECTTTCC-EESSHHHHHHHGGGGSCC-
T ss_pred             ------cCeECCCCCC-CcCCHHHHHHHhCccCCCC
Confidence                  6777888888 8888888888888 88764

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.67  E-value=5.5e-17  Score=119.19  Aligned_cols=80  Identities=29%  Similarity=0.615  Sum_probs=76.2

Q ss_pred             cceeCCC--CCCccccccCCccccccHHHHhcccccccCCCCccCC--CCCCCccCChhHhHHHhh-ccCCCceecc-CC
Q 020075          171 TRFSCPY--DGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCD--KCHKKSFSVVSDLRSHYK-NCGESRWKCS-CG  244 (331)
Q Consensus       171 ~~~~C~~--c~~~~~~~h~~~k~f~~~~~l~~H~~~h~~~k~~~C~--~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~  244 (331)
                      .+|.|.+  |+          +.|.....|..|++.|+++++|.|+  .|++ .|.....|..|++ |++++||.|. |+
T Consensus         4 ~~~~C~~~~C~----------~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~-~f~~~~~l~~H~~~h~~~~~~~C~~C~   72 (89)
T 2wbs_A            4 ATHTCDYAGCG----------KTYTKSSHLKAHLRTHTGEKPYHCDWDGCGW-KFARSDELTRHYRKHTGHRPFQCQKCD   72 (89)
T ss_dssp             CCEECCSTTTC----------CEESSHHHHHHHHTTSCSSCCEECCSTTTCC-EESSHHHHHHHHHHHHCCCCEECSSSS
T ss_pred             CCeeCCCCCCC----------CcCCCHHHHHHHHHhcCCCCCcCCCCCCCCC-ccCCHHHHHHHHHHcCCCCCccCCCCC
Confidence            5689999  98          9999999999999999999999997  6999 9999999999999 9999999999 99


Q ss_pred             cccCCHHHHHHHHHhhc
Q 020075          245 TSFSRKDKLFGHVALFE  261 (331)
Q Consensus       245 k~F~~~~~L~~H~~~H~  261 (331)
                      +.|.+...|..|+++|.
T Consensus        73 ~~f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           73 RAFSRSDHLALHMKRHF   89 (89)
T ss_dssp             CEESSHHHHHHHGGGGC
T ss_pred             cccCCHHHHHHHHHhhC
Confidence            99999999999999984

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=7.7e-17  Score=117.60  Aligned_cols=76  Identities=22%  Similarity=0.413  Sum_probs=70.7

Q ss_pred             HhcccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCC----Cceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          198 VKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGE----SRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       198 l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~e----kp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      +.+|+++|+++++|.|.+|++ .|.....|..|++ |+++    ++|.|. |++.|.+...|..|+++|++++++.|..|
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~-~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~   81 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDK-TFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS   81 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSC-EESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCC
T ss_pred             cccccceecCCCCCcCCCCCC-ccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCC
Confidence            578999999999999999999 9999999999998 6654    899999 99999999999999999999999999888


Q ss_pred             ccc
Q 020075          272 KMK  274 (331)
Q Consensus       272 ~~~  274 (331)
                      ...
T Consensus        82 ~~~   84 (86)
T 1x6h_A           82 GPS   84 (86)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            753

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.66  E-value=5.8e-18  Score=124.54  Aligned_cols=80  Identities=25%  Similarity=0.424  Sum_probs=67.3

Q ss_pred             CCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHHhccc
Q 020075          123 EHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHF  202 (331)
Q Consensus       123 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~H~  202 (331)
                      ++||.|.+|++.|.....|..|+++|+++                                                   
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~---------------------------------------------------   29 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGE---------------------------------------------------   29 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCC---------------------------------------------------
Confidence            46777777777777777777777777665                                                   


Q ss_pred             ccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhc
Q 020075          203 KRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFE  261 (331)
Q Consensus       203 ~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~  261 (331)
                            ++|.|++|++ .|.....|..|++ |++ ++|.|. |++.|.+...|..|++.++
T Consensus        30 ------~~~~C~~C~k-~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~~~~h   82 (88)
T 1llm_C           30 ------KPFACDICGR-KFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVARLK   82 (88)
T ss_dssp             ------CCEECTTTCC-EESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------CCccCCCCCC-ccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHHHHHH
Confidence                  7789999999 9999999999999 775 889999 9999999999999998754

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=4.6e-17  Score=122.36  Aligned_cols=71  Identities=18%  Similarity=0.252  Sum_probs=66.4

Q ss_pred             HHhcccccccCCCCccCCCCCCCccC-ChhHhHHHhh-ccC-CCceecc-CCcccCCHHHHHHHHHhhcCCCCccC
Q 020075          197 CVKNHFKRSHCPKMYSCDKCHKKSFS-VVSDLRSHYK-NCG-ESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVE  268 (331)
Q Consensus       197 ~l~~H~~~h~~~k~~~C~~C~k~~f~-~~~~L~~H~~-H~~-ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c  268 (331)
                      .+..|++.|+++++|.|.+|++ .|. .+..|..|++ |++ ++||.|. |++.|.++..|.+|+++|++++|...
T Consensus        11 ~~~~h~~~h~~~~~~~C~~C~k-~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~~   85 (98)
T 2gqj_A           11 PEEQWQRAIHERGEAVCPTCNV-VTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDA   85 (98)
T ss_dssp             SCSHHHHTTTTTSCCCCTTTCC-CCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSCC
T ss_pred             cHHHHHHHhccCCCcCCCCCCC-ChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCCCC
Confidence            3578999999999999999999 999 9999999999 998 9999999 99999999999999999999998543

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.65  E-value=2.2e-16  Score=112.03  Aligned_cols=62  Identities=35%  Similarity=0.767  Sum_probs=58.9

Q ss_pred             cccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCc
Q 020075          204 RSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPE  266 (331)
Q Consensus       204 ~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~  266 (331)
                      .+.++++|.|..|++ .|..+..|..|++ |++++||.|. |++.|.+...|.+|+++|++++||
T Consensus        11 ~~~~~~~~~C~~C~k-~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           11 MTHSDKPYKCDRCQA-SFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCCSBCCTTSSC-CBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             ccCCCCCeECCCCCc-eeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            455679999999999 9999999999999 9999999999 999999999999999999999987

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.64  E-value=1.8e-16  Score=116.57  Aligned_cols=78  Identities=24%  Similarity=0.418  Sum_probs=68.0

Q ss_pred             CCCCCCCCchhhhhhhhhhcCCCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCc
Q 020075          102 SEHDIESDCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCN  181 (331)
Q Consensus       102 ~~~~~~~~~~~l~~h~~~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~  181 (331)
                      .|.+.|.....|..|++.|.++++|.|.+|++.|.+...|..|+++|+++                              
T Consensus        11 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~------------------------------   60 (90)
T 1a1h_A           11 SCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE------------------------------   60 (90)
T ss_dssp             SCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCC------------------------------
T ss_pred             CCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCC------------------------------
Confidence            68999999999999999999999999999999999999999999999886                              


Q ss_pred             cccccCCccccccHHHHhcccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCC
Q 020075          182 RNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGES  237 (331)
Q Consensus       182 ~~~~h~~~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ek  237 (331)
                                                 ++|.|.+|++ .|.++..|..|++ |++++
T Consensus        61 ---------------------------~~~~C~~C~~-~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           61 ---------------------------KPFACDICGR-KFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             ---------------------------CCEECTTTCC-EESSHHHHHHHHGGGGC--
T ss_pred             ---------------------------CCccCCCCCc-hhCCHHHHHHHHHHhcccC
Confidence                                       5677777777 7888888888887 77765

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.61  E-value=1.2e-15  Score=113.68  Aligned_cols=90  Identities=24%  Similarity=0.453  Sum_probs=83.7

Q ss_pred             hcCCCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHHh
Q 020075          120 LLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVK  199 (331)
Q Consensus       120 h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~  199 (331)
                      +.++++|.|.+|++.|.....|..|+++|+++                   ++|.|.+|+          +.|.....|.
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-------------------~~~~C~~C~----------~~f~~~~~l~   53 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGV-------------------KPYKCKTCD----------YAAADSSSLN   53 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCC-------------------CSEECSSSC----------CEESSHHHHH
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCC-------------------CCEeCCCCC----------CccCCHHHHH
Confidence            35688999999999999999999999999987                   678888888          9999999999


Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCce
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRW  239 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~  239 (331)
                      .|++.|+++++|.|.+|++ .|.....|..|++ |+++++.
T Consensus        54 ~H~~~h~~~~~~~C~~C~~-~f~~~~~l~~H~~~h~~~~~p   93 (96)
T 2dmd_A           54 KHLRIHSDERPFKCQICPY-ASRNSSQLTVHLRSHTGDSGP   93 (96)
T ss_dssp             HHHHHSCCCCCEECSSSSC-EESSHHHHHHHHTTCCSCCCC
T ss_pred             HHHHHhCCCCCccCCCCCC-ccCCHHHHHHHHHHhcCCCCC
Confidence            9999999999999999999 9999999999999 9998764

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=6.3e-16  Score=109.08  Aligned_cols=64  Identities=31%  Similarity=0.540  Sum_probs=60.0

Q ss_pred             ccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCC
Q 020075          201 HFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMP  265 (331)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p  265 (331)
                      +.++|+++++|.|++|++ .|.....|..|++ |++++||.|. |++.|.+...|.+|+++|+++.+
T Consensus         5 ~~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~   70 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGK-AFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPS   70 (72)
T ss_dssp             CCCTTTTCCCEECSSSCC-EESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSSS
T ss_pred             CCcccCCCCCccCCCCCC-ccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            467888899999999999 9999999999999 9999999999 99999999999999999997753

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.61  E-value=4e-16  Score=114.52  Aligned_cols=82  Identities=27%  Similarity=0.623  Sum_probs=76.2

Q ss_pred             CCcccccc--chhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCC--CCCCccccccCCccccccHHHH
Q 020075          123 EHIHFCDI--CGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCP--YDGCNRNKKHKKFRALKSVICV  198 (331)
Q Consensus       123 ~~~~~C~~--C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~--~c~~~~~~~h~~~k~f~~~~~l  198 (331)
                      .++|.|.+  |++.|.....|..|+++|+++                   ++|.|+  .|+          +.|.....|
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-------------------~~~~C~~~~C~----------~~f~~~~~l   53 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGE-------------------KPYHCDWDGCG----------WKFARSDEL   53 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSS-------------------CCEECCSTTTC----------CEESSHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCC-------------------CCcCCCCCCCC----------CccCCHHHH
Confidence            56899999  999999999999999999987                   678887  488          999999999


Q ss_pred             hcccccccCCCCccCCCCCCCccCChhHhHHHhh-cc
Q 020075          199 KNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NC  234 (331)
Q Consensus       199 ~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~  234 (331)
                      ..|++.|+++++|.|++|++ .|.....|..|++ |.
T Consensus        54 ~~H~~~h~~~~~~~C~~C~~-~f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           54 TRHYRKHTGHRPFQCQKCDR-AFSRSDHLALHMKRHF   89 (89)
T ss_dssp             HHHHHHHHCCCCEECSSSSC-EESSHHHHHHHGGGGC
T ss_pred             HHHHHHcCCCCCccCCCCCc-ccCCHHHHHHHHHhhC
Confidence            99999999999999999999 9999999999999 74

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=4.8e-16  Score=111.53  Aligned_cols=39  Identities=33%  Similarity=0.687  Sum_probs=26.3

Q ss_pred             CCccCCC--CCCCccCChhHhHHHhh-ccCCCceecc-CCcccC
Q 020075          209 KMYSCDK--CHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFS  248 (331)
Q Consensus       209 k~~~C~~--C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~  248 (331)
                      ++|.|++  |++ .|..+..|..|++ |++++||.|. |+++|.
T Consensus        37 ~~~~C~~~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A           37 KSFSCPEPACGK-SFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             CCEECSCTTTCC-EESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCeECCCCCCcC-ccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            5566665  666 6777777777776 7777777777 776663

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=5.5e-16  Score=112.98  Aligned_cols=81  Identities=23%  Similarity=0.413  Sum_probs=69.1

Q ss_pred             hhhhhhhhcCCCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCcccc
Q 020075          113 VEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRAL  192 (331)
Q Consensus       113 l~~h~~~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f  192 (331)
                      +..|+++|.++++|.|.+|++.|.....|..|++.|++.                   .                     
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~-------------------~---------------------   42 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP-------------------N---------------------   42 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS-------------------S---------------------
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCC-------------------c---------------------
Confidence            567999999999999999999999999999999987764                   0                     


Q ss_pred             ccHHHHhcccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCccc
Q 020075          193 KSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSF  247 (331)
Q Consensus       193 ~~~~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F  247 (331)
                                   ..+++|.|.+|++ .|..+..|..|++ |++++++.|. |+.+|
T Consensus        43 -------------~~~~~~~C~~C~~-~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           43 -------------FVPAAFVCSKCGK-TFTRRNTMARHADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             -------------CCCCCEECSSSCC-EESCHHHHHHHHHHCCCCCSCCCCCCCCCC
T ss_pred             -------------CCCcceECCCCCC-hhCCHHHHHHHHHHccCCCCcccCCCCCCC
Confidence                         0025788888888 8999999999998 9999999998 88876

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=7.9e-16  Score=107.92  Aligned_cols=63  Identities=25%  Similarity=0.506  Sum_probs=59.4

Q ss_pred             cccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCcc
Q 020075          204 RSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEV  267 (331)
Q Consensus       204 ~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~  267 (331)
                      .|.++++|.|.+|++ .|..+..|..|++ |++++||.|. |++.|.+...|..|+++|++++|..
T Consensus         3 s~~~~~~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A            3 SGSSGHPEKCSECSY-SCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             SCCCCCSEECSSSSC-EESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred             CCCCCCCeECCCCCc-ccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence            466789999999999 9999999999999 9999999999 9999999999999999999998754

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=4.5e-16  Score=117.44  Aligned_cols=68  Identities=19%  Similarity=0.235  Sum_probs=62.4

Q ss_pred             cccCCCCccCCCCCCCccCChhHhHHHhh--c---cCCCceecc-CCcccCCHHHHHHH-HHhhcCCCCccCcccc
Q 020075          204 RSHCPKMYSCDKCHKKSFSVVSDLRSHYK--N---CGESRWKCS-CGTSFSRKDKLFGH-VALFEGHMPEVEVDEK  272 (331)
Q Consensus       204 ~h~~~k~~~C~~C~k~~f~~~~~L~~H~~--H---~~ekp~~C~-C~k~F~~~~~L~~H-~~~H~~e~p~~c~~~~  272 (331)
                      ..++++||.|.+|++ .|..++.|..|++  |   ++++||.|. ||++|.++..|..| +++|+|++||.|..+.
T Consensus        12 ~~~gekpy~C~~Cgk-~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           12 NKKVEGGYECKYCTF-QTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCCCSSEECSSCSC-EESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             cCCCCcCcCCCCCCC-ccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            445789999999999 9999999999995  8   678999999 99999999999999 8999999999998744

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.60  E-value=3.6e-17  Score=129.05  Aligned_cols=70  Identities=21%  Similarity=0.393  Sum_probs=62.3

Q ss_pred             cccccHHHHhcccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCC
Q 020075          190 RALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGH  263 (331)
Q Consensus       190 k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e  263 (331)
                      +.|.....|..|+ .|++++||.|++|++ .|..+..|..|++ |  ++||.|. |++.|.+...|.+|+++|+|.
T Consensus        55 ~~~~~~~~l~~h~-~h~~~~~~~C~~C~k-~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           55 QLLDESSYLYRLL-ASKAISQFVCPLCLM-PFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             GGTTTHHHHHHHH-HHHHHCSEECTTTCC-EESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             cccCCHHHHHHHH-HhCCCCCeECCCCCc-ccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            3444556667776 688899999999999 9999999999999 9  8999999 999999999999999999976

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=6.4e-16  Score=115.59  Aligned_cols=76  Identities=13%  Similarity=0.209  Sum_probs=68.2

Q ss_pred             cccccHHHHhcccccccCCCCccCCCCCCCcc-CChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHH-HHhhcCCCC
Q 020075          190 RALKSVICVKNHFKRSHCPKMYSCDKCHKKSF-SVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGH-VALFEGHMP  265 (331)
Q Consensus       190 k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~~f-~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H-~~~H~~e~p  265 (331)
                      ..|.....|..|++.|+++++|.|++|++ .| ..+..|..|++ | +++||.|. |+|.|.++..|..| +++|+++..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k-~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQA-VGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCS-CEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSS
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCC-CcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCCCC
Confidence            45566667889999999999999999999 99 99999999999 9 99999999 99999999999999 899986554


Q ss_pred             cc
Q 020075          266 EV  267 (331)
Q Consensus       266 ~~  267 (331)
                      |.
T Consensus        92 ~~   93 (96)
T 2ctd_A           92 GP   93 (96)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.59  E-value=5e-16  Score=118.38  Aligned_cols=84  Identities=13%  Similarity=0.084  Sum_probs=69.6

Q ss_pred             CCCCCCCCCCCCchhhhhhhhhhcCCCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCC
Q 020075           98 PEIGSEHDIESDCEIVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPY  177 (331)
Q Consensus        98 ~~~~~~~~~~~~~~~l~~h~~~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~  177 (331)
                      +.|..|.+.|.....|..|++.|  .++|.|.+|++.|.....|..|++ |+++                          
T Consensus        17 ~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~--------------------------   67 (107)
T 1wjp_A           17 YQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEY--------------------------   67 (107)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HCST--------------------------
T ss_pred             eECCCCCCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cCCC--------------------------
Confidence            33448999999999999999999  479999999999999999999996 8876                          


Q ss_pred             CCCccccccCCccccccHHHHhcccccccCCCCccCCCCCCCccCChhHhHHHhh--ccCCCceecc
Q 020075          178 DGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK--NCGESRWKCS  242 (331)
Q Consensus       178 c~~~~~~~h~~~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~--H~~ekp~~C~  242 (331)
                                                     ++|.|++|++ .|..+..|..|++  |++++||.|.
T Consensus        68 -------------------------------~~~~C~~C~~-~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           68 -------------------------------KKLTCLECMR-TFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             -------------------------------GGGEEGGGTE-ECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             -------------------------------CCccCccccc-hhCCHHHHHHHHHHHcCCCCCCCCC
Confidence                                           5577777777 7777777777774  7777777764

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=2.1e-15  Score=107.79  Aligned_cols=67  Identities=22%  Similarity=0.431  Sum_probs=60.3

Q ss_pred             HhcccccccCCCCccCCCCCCCccCChhHhHHHhh--ccCC-Cceecc-CCcccCCHHHHHHHHHhhcC-CCC
Q 020075          198 VKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK--NCGE-SRWKCS-CGTSFSRKDKLFGHVALFEG-HMP  265 (331)
Q Consensus       198 l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~--H~~e-kp~~C~-C~k~F~~~~~L~~H~~~H~~-e~p  265 (331)
                      |.+|+++|++++||.|++|++ .|..+..|..|++  |+++ ++|.|. |++.|.+...|..|+++|++ +.|
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p   74 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHA-RFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGP   74 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCC-EESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSCC
T ss_pred             CCccccccCCCCCeECCCcCc-hhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            568999999999999999999 9999999999996  7764 899999 99999999999999998554 444

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.57  E-value=1.4e-15  Score=109.63  Aligned_cols=81  Identities=33%  Similarity=0.602  Sum_probs=75.9

Q ss_pred             ccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHHhccccc
Q 020075          125 IHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKR  204 (331)
Q Consensus       125 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~H~~~  204 (331)
                      ||.|.+|++.|.....|..|+++|.++                   ++|.|..|+          +.|.....|..|++.
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~-------------------~~~~C~~C~----------~~f~~~~~l~~H~~~   51 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDT-------------------RPYPCQYCG----------KRFHQKSDMKKHTFI   51 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTC-------------------CCEECSSSC----------CEESSHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCC-------------------CCeeCCcCC----------hhhCCHHHHHHHHHH
Confidence            689999999999999999999999988                   678888888          999999999999999


Q ss_pred             ccCCCCccCCCCCCCccCChhHhHHHhh-ccC
Q 020075          205 SHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCG  235 (331)
Q Consensus       205 h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~  235 (331)
                      |+++++|.|++|++ .|.++..|..|++ |+|
T Consensus        52 h~~~~~~~C~~C~~-~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           52 HTGEKPHKCQVCGK-AFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             HHTCCCEECTTTSC-EESSHHHHHHHHHHHC-
T ss_pred             hcCCCCCcCCCcch-hhCChHHHHHHHHhhCC
Confidence            99999999999999 9999999999999 875

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=1.4e-15  Score=108.63  Aligned_cols=65  Identities=34%  Similarity=0.582  Sum_probs=53.4

Q ss_pred             hhcCCCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHH
Q 020075          119 ELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICV  198 (331)
Q Consensus       119 ~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l  198 (331)
                      .+.++++|.|.+|++.|.....|..|+++|+++                                               
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------------------------------   44 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE-----------------------------------------------   44 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS-----------------------------------------------
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcCCC-----------------------------------------------
Confidence            345678899999999999999999998888775                                               


Q ss_pred             hcccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceec
Q 020075          199 KNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKC  241 (331)
Q Consensus       199 ~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C  241 (331)
                                ++|.|++|++ .|..+..|..|++ |++++||.|
T Consensus        45 ----------~~~~C~~C~~-~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           45 ----------KPYKCDECGK-AFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             ----------CSEECSSSCC-EESSHHHHHHHGGGSCCCCCCCC
T ss_pred             ----------cCeeCCCCCC-ccCCHHHHHHHHHHhCCCCCCCC
Confidence                      6677777888 8888888888888 888888877

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.56  E-value=4.2e-15  Score=110.40  Aligned_cols=76  Identities=28%  Similarity=0.462  Sum_probs=70.6

Q ss_pred             cCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCC--CCccCccccccCCccccc
Q 020075          206 HCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGH--MPEVEVDEKMKHHDQDVV  281 (331)
Q Consensus       206 ~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e--~p~~c~~~~~~~~~~~~~  281 (331)
                      .++++|.|.+|++ .|.....|..|++ |+++++|.|. |++.|.+...|..|+++|+++  +||.|..|...+.....+
T Consensus         3 ~~~~~~~C~~C~~-~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L   81 (95)
T 2yt9_A            3 SGSSGVACEICGK-IFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHL   81 (95)
T ss_dssp             CCCSCEECSSSCC-EESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHH
T ss_pred             CCCCCeECCCCCC-ccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHH
Confidence            4568999999999 9999999999999 9999999999 999999999999999999997  999999999988776655


Q ss_pred             c
Q 020075          282 V  282 (331)
Q Consensus       282 ~  282 (331)
                      .
T Consensus        82 ~   82 (95)
T 2yt9_A           82 N   82 (95)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.55  E-value=3.3e-15  Score=108.75  Aligned_cols=62  Identities=18%  Similarity=0.336  Sum_probs=56.2

Q ss_pred             cccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHH-hhcCCC
Q 020075          202 FKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVA-LFEGHM  264 (331)
Q Consensus       202 ~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~-~H~~e~  264 (331)
                      +..+...++|.|++|++ .|.++..|..|++ |++++||.|. |+|+|.++..|.+|++ +|++|.
T Consensus        20 ~~~~~~~~~h~C~~Cgk-~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           20 LGLSASAECHLCPVCGE-SFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CSSCCCCTTEECTTSCC-EESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCCCCEECCCCCC-CcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            45566678999999999 9999999999999 9999999999 9999999999999974 688764

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=2e-15  Score=115.43  Aligned_cols=77  Identities=29%  Similarity=0.484  Sum_probs=71.4

Q ss_pred             ccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccccccCCcccc
Q 020075          203 KRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDEKMKHHDQDV  280 (331)
Q Consensus       203 ~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~~~~~~~~~~  280 (331)
                      ..|+++++|.| .|++ .|.....|..|++ |+++++|.|. |++.|.+...|..|+++|++++||.|..|...+.....
T Consensus         3 ~~h~~~k~~~C-~C~~-~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   80 (110)
T 2csh_A            3 SGSSGDKLYPC-QCGK-SFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDS   80 (110)
T ss_dssp             CCCCCCCCEEC-TTSC-EESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHH
T ss_pred             CCCCCCCCEec-cCCC-ccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHH
Confidence            35778899999 9999 9999999999999 9999999999 99999999999999999999999999999998876654


Q ss_pred             c
Q 020075          281 V  281 (331)
Q Consensus       281 ~  281 (331)
                      +
T Consensus        81 l   81 (110)
T 2csh_A           81 F   81 (110)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=2.7e-16  Score=121.41  Aligned_cols=87  Identities=10%  Similarity=0.086  Sum_probs=78.3

Q ss_pred             HHHhcccccccCCCCccCCCCCCCccCChhHhHHHhh---ccCCCcee-cc-CCccc--CCHHHHHHHHHhhcCCCCccC
Q 020075          196 ICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK---NCGESRWK-CS-CGTSF--SRKDKLFGHVALFEGHMPEVE  268 (331)
Q Consensus       196 ~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~---H~~ekp~~-C~-C~k~F--~~~~~L~~H~~~H~~e~p~~c  268 (331)
                      ..|+.|++.|+++++|.|.+|++ .|..+..|..|++   |.+++++. |. |++.|  .....|..|+++|++++||.|
T Consensus         5 ~~l~~H~~~H~~~~~~~C~~C~k-~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C   83 (115)
T 2dmi_A            5 SSGKLYGSIFTGASKFRCKDCSA-AYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKC   83 (115)
T ss_dssp             CCCCCCCCCCCCCCSEEBSSSSC-EESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBC
T ss_pred             hhhhhheeeeCCCCCEECCccCc-hhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceEC
Confidence            34789999999999999999999 9999999999998   56677665 99 99999  999999999999999999999


Q ss_pred             ccccccCCccccccc
Q 020075          269 VDEKMKHHDQDVVVV  283 (331)
Q Consensus       269 ~~~~~~~~~~~~~~~  283 (331)
                      ..|...+.....+..
T Consensus        84 ~~C~k~f~~~~~L~~   98 (115)
T 2dmi_A           84 MYCGHSFESLQDLSV   98 (115)
T ss_dssp             SSSCCBCSSHHHHHH
T ss_pred             CCCCCccCCHHHHHH
Confidence            999999887765543

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.54  E-value=5.6e-15  Score=98.96  Aligned_cols=55  Identities=25%  Similarity=0.427  Sum_probs=49.2

Q ss_pred             CCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcC
Q 020075          207 CPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEG  262 (331)
Q Consensus       207 ~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~  262 (331)
                      ++++|.|.+|++ .|.....|..|++ |++++||.|. |++.|.+...|..|+++|++
T Consensus         1 g~~~~~C~~C~~-~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGK-FFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCC-BCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcc-hhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            358999999999 9999999999999 9999999999 99999999999999999874

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=1.6e-15  Score=113.87  Aligned_cols=77  Identities=16%  Similarity=0.215  Sum_probs=62.9

Q ss_pred             CCchhhhhhhhhhcCCCccccccchhhcc-CHHHHHHHHHHhcC-CCCCchhccCCcccccCCCccceeCCCCCCccccc
Q 020075          108 SDCEIVEIDAVELLAEHIHFCDICGKGFK-RDANLRMHMRAHGD-EFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKK  185 (331)
Q Consensus       108 ~~~~~l~~h~~~h~~~~~~~C~~C~k~F~-~~~~L~~H~~~H~~-~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~  185 (331)
                      .....+..|+++|.++++|.|.+|++.|. ....|..|+++|++ +                                  
T Consensus         7 ~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~----------------------------------   52 (98)
T 2gqj_A            7 GPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQ----------------------------------   52 (98)
T ss_dssp             CCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHH----------------------------------
T ss_pred             CCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCC----------------------------------
Confidence            33445778999999999999999999999 99999999999887 5                                  


Q ss_pred             cCCccccccHHHHhcccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          186 HKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       186 h~~~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                                             ++|.|.+|++ .|.++..|..|++ |++++|+...
T Consensus        53 -----------------------~~~~C~~C~k-~F~~~~~L~~H~~~h~~~kp~~~~   86 (98)
T 2gqj_A           53 -----------------------DALKCQHCRK-QFKSKAGLNYHTMAEHSAKPSDAE   86 (98)
T ss_dssp             -----------------------HHHSCSSSCC-CCSCHHHHHHHHHHHSCSCSSCCC
T ss_pred             -----------------------CCEECCCCCC-ccCCHHHHHHHHHHHcCCCCCCCC
Confidence                                   5677777887 7888888888887 7777775543

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.53  E-value=4.6e-15  Score=111.87  Aligned_cols=71  Identities=20%  Similarity=0.243  Sum_probs=56.8

Q ss_pred             hcCCCccccccchhhccCHHHHHHHHH-HhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHH
Q 020075          120 LLAEHIHFCDICGKGFKRDANLRMHMR-AHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICV  198 (331)
Q Consensus       120 h~~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l  198 (331)
                      ..|++||.|..||+.|..+..|..|++ +|++.                                               
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~-----------------------------------------------   45 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNV-----------------------------------------------   45 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSC-----------------------------------------------
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCC-----------------------------------------------
Confidence            367899999999999999999999997 48441                                               


Q ss_pred             hcccccccCCCCccCCCCCCCccCChhHhHHH-hh-ccCCCceecc-CCc
Q 020075          199 KNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSH-YK-NCGESRWKCS-CGT  245 (331)
Q Consensus       199 ~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H-~~-H~~ekp~~C~-C~k  245 (331)
                             .+++||.|.+||+ .|..++.|..| ++ |+|++||.|. +.+
T Consensus        46 -------~~ekpf~C~~Cgk-~F~~~~~L~~H~~r~Htgekpy~C~~~~~   87 (102)
T 2ghf_A           46 -------VLNSSYVCVECNF-LTKRYDALSEHNLKYHPGEENFKLTMVKR   87 (102)
T ss_dssp             -------CCSCCEEETTTTE-EESSTHHHHTHHHHTSTTCCCEEEEECCC
T ss_pred             -------CCCCCcCCCCCCc-ccCCHHHHHHHHHHhcCCCCCeeCCcccC
Confidence                   0126788888888 88888888888 67 8888888887 553

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=1.5e-14  Score=103.58  Aligned_cols=69  Identities=25%  Similarity=0.359  Sum_probs=64.2

Q ss_pred             cCCCCccCCC--CCCCccCChhHhHHHhh--ccCCCceecc---CCcccCCHHHHHHHHHhhcCCCCccCccccccC
Q 020075          206 HCPKMYSCDK--CHKKSFSVVSDLRSHYK--NCGESRWKCS---CGTSFSRKDKLFGHVALFEGHMPEVEVDEKMKH  275 (331)
Q Consensus       206 ~~~k~~~C~~--C~k~~f~~~~~L~~H~~--H~~ekp~~C~---C~k~F~~~~~L~~H~~~H~~e~p~~c~~~~~~~  275 (331)
                      +++++|.|..  |++ .|.++..|..|++  |++++||.|.   |++.|.++..|..|+++|++++||.|..|...+
T Consensus         3 ~~~~~~~C~~~~C~~-~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F   78 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGR-IFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS   78 (79)
T ss_dssp             SCCSSEECSSTTTCC-EESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCC
T ss_pred             CCCCCccCCCCCCcC-ccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCC
Confidence            4568899987  999 9999999999997  8999999995   999999999999999999999999999998765

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=7.6e-15  Score=101.45  Aligned_cols=60  Identities=23%  Similarity=0.545  Sum_probs=55.4

Q ss_pred             cccccCCCCccCCCCCCCccCChhHhHHHhh--c-cCCCceecc-CCcccCCHHHHHHHHHhhcC
Q 020075          202 FKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK--N-CGESRWKCS-CGTSFSRKDKLFGHVALFEG  262 (331)
Q Consensus       202 ~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~--H-~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~  262 (331)
                      +++|++++||.|+.|++ .|..+..|..|++  | ++++||.|. |++.|.+...|..|+++|++
T Consensus         2 ~~~h~~~k~~~C~~C~k-~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSR-VYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             -CEEEETTEEECTTTCC-EESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ccccCCCcceECCCCcc-hhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            35788889999999999 9999999999998  6 589999999 99999999999999999876

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.52  E-value=8.7e-15  Score=103.67  Aligned_cols=63  Identities=29%  Similarity=0.584  Sum_probs=53.6

Q ss_pred             hhcCCCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHH
Q 020075          119 ELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICV  198 (331)
Q Consensus       119 ~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l  198 (331)
                      .+.++++|+|.+|++.|.....|..|+++|+++                                               
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~-----------------------------------------------   43 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGE-----------------------------------------------   43 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCC-----------------------------------------------
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCC-----------------------------------------------
Confidence            446688999999999999999999999998876                                               


Q ss_pred             hcccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCce
Q 020075          199 KNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRW  239 (331)
Q Consensus       199 ~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~  239 (331)
                                ++|.|.+|++ .|..+..|..|++ |++++||
T Consensus        44 ----------~~~~C~~C~k-~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           44 ----------KPYRCNICGA-QFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             ----------CSEECTTTCC-EESCHHHHHHHHHHHCCSCCC
T ss_pred             ----------CCEECCCCCc-hhCCHHHHHHHHHhcCCCCCC
Confidence                      6678888888 8888888888888 8888886

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.52  E-value=1.2e-14  Score=97.23  Aligned_cols=54  Identities=24%  Similarity=0.474  Sum_probs=52.1

Q ss_pred             CccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCC
Q 020075          210 MYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHM  264 (331)
Q Consensus       210 ~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~  264 (331)
                      ||.|++|++ .|.....|..|++ |++++||.|. |++.|.+...|..|+++|++++
T Consensus         1 p~~C~~C~~-~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGI-RXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCC-BCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcC-cCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            699999999 9999999999999 9999999999 9999999999999999999875

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=2.3e-14  Score=107.12  Aligned_cols=75  Identities=17%  Similarity=0.311  Sum_probs=62.1

Q ss_pred             CCCCchhhhhhhhhhcCCCccccccchhhc-cCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCcccc
Q 020075          106 IESDCEIVEIDAVELLAEHIHFCDICGKGF-KRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNK  184 (331)
Q Consensus       106 ~~~~~~~l~~h~~~h~~~~~~~C~~C~k~F-~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~  184 (331)
                      .+.....|..|++.|.++++|.|++|++.| .....|..|+++| ++                                 
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~---------------------------------   60 (96)
T 2ctd_A           15 VYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQ---------------------------------   60 (96)
T ss_dssp             SSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CC---------------------------------
T ss_pred             CCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CC---------------------------------
Confidence            456667788999999999999999999999 8999999999999 76                                 


Q ss_pred             ccCCccccccHHHHhcccccccCCCCccCCCCCCCccCChhHhHHH-hh-ccCCCce
Q 020075          185 KHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSH-YK-NCGESRW  239 (331)
Q Consensus       185 ~h~~~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H-~~-H~~ekp~  239 (331)
                                              ++|.|.+|++ .|..+..|..| ++ |+++..|
T Consensus        61 ------------------------k~~~C~~Cgk-~F~~~~~L~~H~~~~H~~~p~~   92 (96)
T 2ctd_A           61 ------------------------EMFTCHHCGK-QLRSLAGMKYHVMANHNSLPSG   92 (96)
T ss_dssp             ------------------------CCCCCSSSCC-CCSSHHHHHHHHHHHTCCCSSC
T ss_pred             ------------------------CCeECCCCCC-eeCCHHHHHHHhHHhcCCCCCC
Confidence                                    6677888888 88888888888 67 7764433

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.50  E-value=1.2e-14  Score=105.45  Aligned_cols=76  Identities=33%  Similarity=0.661  Sum_probs=52.6

Q ss_pred             cccc--ccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHHhccc
Q 020075          125 IHFC--DICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHF  202 (331)
Q Consensus       125 ~~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~H~  202 (331)
                      ||.|  +.|++.|.....|..|+++|+++                                                   
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~---------------------------------------------------   29 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQ---------------------------------------------------   29 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTT---------------------------------------------------
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCC---------------------------------------------------
Confidence            5777  77787787777777777777765                                                   


Q ss_pred             ccccCCCCccCCC--CCCCccCChhHhHHHhh-ccCCCceecc----CCcccCCHHHHHHHHHhhc
Q 020075          203 KRSHCPKMYSCDK--CHKKSFSVVSDLRSHYK-NCGESRWKCS----CGTSFSRKDKLFGHVALFE  261 (331)
Q Consensus       203 ~~h~~~k~~~C~~--C~k~~f~~~~~L~~H~~-H~~ekp~~C~----C~k~F~~~~~L~~H~~~H~  261 (331)
                            ++|.|++  |++ .|.....|..|++ |++   |.|.    |++.|.+...|..|+++|+
T Consensus        30 ------~~~~C~~~~C~~-~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           30 ------LPYECPHEGCDK-RFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             ------CCEECCSTTCCC-EESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             ------CCeeCCCCCCcC-ccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence                  5566655  666 6777777777766 666   6662    6667777777777766653

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=1.6e-14  Score=103.35  Aligned_cols=64  Identities=19%  Similarity=0.385  Sum_probs=57.2

Q ss_pred             cccCCCCccCCCCCCCccCChhHhHHHhh-ccC---CCceecc-CCcccCCHHHHHHHHH-hhcCCCCccC
Q 020075          204 RSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCG---ESRWKCS-CGTSFSRKDKLFGHVA-LFEGHMPEVE  268 (331)
Q Consensus       204 ~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~---ekp~~C~-C~k~F~~~~~L~~H~~-~H~~e~p~~c  268 (331)
                      .|+++++|.|.+|++ .|..+..|..|++ |++   ++||.|. |++.|.+...|..|++ .|.++++...
T Consensus         1 ~h~~~k~~~C~~C~k-~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~   70 (78)
T 2d9h_A            1 GSSGSSGLQCEICGF-TCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ   70 (78)
T ss_dssp             CCCSCCCEECSSSCC-EESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCCS
T ss_pred             CCCCCcCeECCCCCC-eeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCcc
Confidence            367889999999999 9999999999999 985   8999999 9999999999999994 5777776544

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.49  E-value=2.2e-14  Score=103.94  Aligned_cols=67  Identities=22%  Similarity=0.435  Sum_probs=61.2

Q ss_pred             CccC--CCCCCCccCChhHhHHHhh-ccCCCceec--c-CCcccCCHHHHHHHHHhhcCCCCccCcc---ccccCCcccc
Q 020075          210 MYSC--DKCHKKSFSVVSDLRSHYK-NCGESRWKC--S-CGTSFSRKDKLFGHVALFEGHMPEVEVD---EKMKHHDQDV  280 (331)
Q Consensus       210 ~~~C--~~C~k~~f~~~~~L~~H~~-H~~ekp~~C--~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~---~~~~~~~~~~  280 (331)
                      ||.|  +.|++ .|.....|..|++ |++++||.|  . |++.|.+...|..|+++|++   |.|..   |...+.....
T Consensus         1 p~~C~~~~C~~-~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~   76 (85)
T 2j7j_A            1 MYVCHFENCGK-AFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTL   76 (85)
T ss_dssp             CEECCSTTCCC-EESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHH
T ss_pred             CccCCCCCCCc-ccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHH
Confidence            6899  99999 9999999999999 999999999  6 99999999999999999998   99988   8887665443

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.49  E-value=5.3e-14  Score=105.37  Aligned_cols=82  Identities=22%  Similarity=0.326  Sum_probs=70.4

Q ss_pred             CCCCCC--CCCCCCCCchhhhhhhhhhcCCCccccc--cchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCcc
Q 020075           96 KNPEIG--SEHDIESDCEIVEIDAVELLAEHIHFCD--ICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKT  171 (331)
Q Consensus        96 ~~~~~~--~~~~~~~~~~~l~~h~~~h~~~~~~~C~--~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~  171 (331)
                      ..+.|.  .|.+.|.....|..|++.|.++++|.|.  .|++.|.....|..|+++|+++                    
T Consensus        14 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~--------------------   73 (100)
T 2ebt_A           14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA--------------------   73 (100)
T ss_dssp             CCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSC--------------------
T ss_pred             cceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCC--------------------
Confidence            344555  4999999999999999999999999996  6999999999999999999886                    


Q ss_pred             ceeCCCCCCccccccCCccccccHHHHhcccccccCCCCccCCCCCCCccCChhHhHHHhh-ccC
Q 020075          172 RFSCPYDGCNRNKKHKKFRALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCG  235 (331)
Q Consensus       172 ~~~C~~c~~~~~~~h~~~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~  235 (331)
                                                           ++|.|.+|++ .|.....|..|++ |++
T Consensus        74 -------------------------------------~~~~C~~C~~-~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           74 -------------------------------------KPFQCGVCNR-SFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             -------------------------------------CSCBCSSSCC-BCSSHHHHHHHHHHHCC
T ss_pred             -------------------------------------CCeECCCCcC-ccCCHHHHHHHHHHhCC
Confidence                                                 5677777887 7888888888887 764

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.47  E-value=4.1e-15  Score=109.12  Aligned_cols=70  Identities=26%  Similarity=0.499  Sum_probs=64.3

Q ss_pred             CCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccccccCCccc
Q 020075          208 PKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDEKMKHHDQD  279 (331)
Q Consensus       208 ~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~~~~~~~~~  279 (331)
                      ++||.|++|++ .|..+..|..|++ |++++||.|. |++.|.+...|..|+++|++ .+|.|..|...+....
T Consensus         1 ek~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~   72 (88)
T 1llm_C            1 MKPFQCRICMR-NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNY   72 (88)
T ss_dssp             CCCEECTTTCC-EESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCC-ccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHh
Confidence            48999999999 9999999999999 9999999999 99999999999999999985 8899999987665443

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=5e-14  Score=95.34  Aligned_cols=55  Identities=27%  Similarity=0.817  Sum_probs=51.2

Q ss_pred             CCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHH-HhhcCCC
Q 020075          209 KMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHV-ALFEGHM  264 (331)
Q Consensus       209 k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~-~~H~~e~  264 (331)
                      +||.|++|++ .|.....|..|++ |++++||.|. |++.|.+...|..|+ ++|.++.
T Consensus         1 k~~~C~~C~~-~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~   58 (60)
T 2adr_A            1 RSFVCEVCTR-AFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL   58 (60)
T ss_dssp             CCBCCTTTCC-CBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCSS
T ss_pred             CcCcCCCCcc-ccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCcC
Confidence            5899999999 9999999999999 9999999999 999999999999997 6787653

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=3.5e-14  Score=100.00  Aligned_cols=64  Identities=34%  Similarity=0.489  Sum_probs=52.6

Q ss_pred             hhhhhcCCCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccH
Q 020075          116 DAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSV  195 (331)
Q Consensus       116 h~~~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~  195 (331)
                      +.++|.++++|.|.+|++.|.....|..|+++|+++                                            
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~--------------------------------------------   40 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE--------------------------------------------   40 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS--------------------------------------------
T ss_pred             CCcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCC--------------------------------------------
Confidence            455788899999999999999999999999988876                                            


Q ss_pred             HHHhcccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCC
Q 020075          196 ICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGES  237 (331)
Q Consensus       196 ~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ek  237 (331)
                                   ++|.|++|++ .|..+..|..|++ |+++.
T Consensus        41 -------------~~~~C~~C~~-~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A           41 -------------KPYKCLECGK-AFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             -------------CCEECSSSCC-EESSHHHHHHHHHHHHSSS
T ss_pred             -------------CCeECCCCCc-ccCCHHHHHHHHHhcCCCC
Confidence                         5677777777 7888888888887 77654

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=3.8e-14  Score=99.19  Aligned_cols=63  Identities=25%  Similarity=0.415  Sum_probs=49.0

Q ss_pred             hhcCCCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHH
Q 020075          119 ELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICV  198 (331)
Q Consensus       119 ~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l  198 (331)
                      .|.++++|+|.+|++.|.....|..|+++|+++                                               
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~-----------------------------------------------   35 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTD-----------------------------------------------   35 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCS-----------------------------------------------
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCC-----------------------------------------------
Confidence            356678888888888888888888888877765                                               


Q ss_pred             hcccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCce
Q 020075          199 KNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRW  239 (331)
Q Consensus       199 ~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~  239 (331)
                                ++|.|++|++ .|..+..|..|++ |++++|.
T Consensus        36 ----------~~~~C~~C~~-~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A           36 ----------RPFKCNYCSF-DTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             ----------CSEECSSSSC-EESSHHHHHHHHHHHHSSSCC
T ss_pred             ----------CCEeCCCCCC-ccCCHHHHHHHHHHHhCCCCC
Confidence                      6677777777 7888888888887 7777764

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=6.2e-16  Score=109.00  Aligned_cols=68  Identities=16%  Similarity=0.149  Sum_probs=63.4

Q ss_pred             HHhcccccccCCCCccCCCCCCCccCChhHhHHHhhccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          197 CVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYKNCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       197 ~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      .|..|++.|+++++|.|++|++ .|.....|..      ++||.|. |++.|.+...|..|+++|++++||.|..|
T Consensus         5 ~l~~H~~~h~~~~~~~C~~C~k-~f~~~~~l~~------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A            5 SSGKRQKIHLGDRSQKCSKCGI-IFIRRSTLSR------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             SCCCCCCCCCCCSEEECSSSCC-EEECCCCCCC------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             hHHHHHHHhCCCCCeeCCcccc-hhCCHHHhCc------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            4678999999999999999999 9999888765      8999999 99999999999999999999999999876

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.44  E-value=1.8e-14  Score=113.45  Aligned_cols=83  Identities=17%  Similarity=0.247  Sum_probs=72.6

Q ss_pred             cCCCccccccchhhcc------CHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCcccccc
Q 020075          121 LAEHIHFCDICGKGFK------RDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKS  194 (331)
Q Consensus       121 ~~~~~~~C~~C~k~F~------~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~  194 (331)
                      ..++.+.|++|++.|.      ....|..|+ .|+++                   ++|.|.+|+          +.|..
T Consensus        37 ~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~-------------------~~~~C~~C~----------k~f~~   86 (129)
T 2wbt_A           37 PEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAI-------------------SQFVCPLCL----------MPFSS   86 (129)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHH-------------------CSEECTTTC----------CEESS
T ss_pred             hhhCcccchhhhcccCCCcccCCHHHHHHHH-HhCCC-------------------CCeECCCCC----------cccCC
Confidence            3467889999988887      566777777 58887                   778889998          99999


Q ss_pred             HHHHhcccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCC
Q 020075          195 VICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGE  236 (331)
Q Consensus       195 ~~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~e  236 (331)
                      ...|+.|++.|  ++||.|++|++ .|..++.|..|++ |++.
T Consensus        87 ~~~l~~H~~~H--~~~~~C~~C~k-~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           87 SVSLKQHIRYT--EHTKVCPVCKK-EFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             HHHHHHHHHHT--CCCCBCTTTCC-BCSSHHHHHHHHHHTTCC
T ss_pred             HhHHHHHHHHC--CCCCCCCCCCc-ccCCHHHHHHHHHHHCCc
Confidence            99999999998  79999999999 9999999999999 8875

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.42  E-value=9.1e-14  Score=101.10  Aligned_cols=61  Identities=21%  Similarity=0.520  Sum_probs=50.9

Q ss_pred             hhcCCCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHH
Q 020075          119 ELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICV  198 (331)
Q Consensus       119 ~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l  198 (331)
                      .+.+.++|.|++||+.|.+...|..|+++|+++                                               
T Consensus        22 ~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~-----------------------------------------------   54 (85)
T 2lv2_A           22 LSASAECHLCPVCGESFASKGAQERHLRLLHAA-----------------------------------------------   54 (85)
T ss_dssp             SCCCCTTEECTTSCCEESSHHHHHHHHHTTSCS-----------------------------------------------
T ss_pred             CCCCCCCEECCCCCCCcCcHHHHhhhhhhccCC-----------------------------------------------
Confidence            445678899999999999999999999998886                                               


Q ss_pred             hcccccccCCCCccCCCCCCCccCChhHhHHHhh--ccCCC
Q 020075          199 KNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK--NCGES  237 (331)
Q Consensus       199 ~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~--H~~ek  237 (331)
                                +||.|++|++ .|.++..|..|++  |++|.
T Consensus        55 ----------k~~~C~~C~k-~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           55 ----------QVFPCKYCPA-TFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             ----------SSEECTTSSC-EESSHHHHHHHHHTTCTTCC
T ss_pred             ----------CccCCCCCCC-EeCCHHHHHHhCcccCcCCC
Confidence                      6788888888 8888888888864  77764

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=1e-13  Score=98.93  Aligned_cols=70  Identities=20%  Similarity=0.365  Sum_probs=57.5

Q ss_pred             hhhhhhhhcCCCccccccchhhccCHHHHHHHHH-HhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccc
Q 020075          113 VEIDAVELLAEHIHFCDICGKGFKRDANLRMHMR-AHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRA  191 (331)
Q Consensus       113 l~~h~~~h~~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~  191 (331)
                      +..|+++|.+++||.|.+|++.|.....|..|++ .|.++                                        
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~----------------------------------------   42 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN----------------------------------------   42 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSS----------------------------------------
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCC----------------------------------------
Confidence            5678999999999999999999999999999997 56542                                        


Q ss_pred             cccHHHHhcccccccCCCCccCCCCCCCccCChhHhHHHhh--ccCCCce
Q 020075          192 LKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK--NCGESRW  239 (331)
Q Consensus       192 f~~~~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~--H~~ekp~  239 (331)
                                      +++|.|++|++ .|..+..|..|++  |..+.|.
T Consensus        43 ----------------~~~~~C~~C~~-~f~~~~~L~~H~~~~H~~~~p~   75 (77)
T 2ct1_A           43 ----------------VAKFHCPHCDT-VIARKSDLGVHLRKQHSYSGPS   75 (77)
T ss_dssp             ----------------CSSEECSSSSC-EESSHHHHHHHHHHTSCCSCCC
T ss_pred             ----------------CCccCCCCCCC-ccCCHHHHHHHHHHhCCCCCCC
Confidence                            15788888888 8888888999988  5555553

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=1.4e-13  Score=96.92  Aligned_cols=58  Identities=28%  Similarity=0.600  Sum_probs=53.9

Q ss_pred             ccccCCCCccCC--CCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhc
Q 020075          203 KRSHCPKMYSCD--KCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFE  261 (331)
Q Consensus       203 ~~h~~~k~~~C~--~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~  261 (331)
                      ..|.++++|.|+  .|++ .|..+..|..|++ |++++||.|. |++.|.+...|..|+++|+
T Consensus        12 ~~~~~~~~~~C~~~~C~k-~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           12 YVVPKMRPYACPVESCDR-RFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCCCCEECSSTTBCC-EESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             ccCCCCCccCCcCCCCCC-ccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            356678999997  5999 9999999999999 9999999999 9999999999999999985

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=2.7e-13  Score=100.55  Aligned_cols=61  Identities=25%  Similarity=0.442  Sum_probs=56.6

Q ss_pred             CCccCCCCCCCccCChhHhHHHhh--ccCCCc--------eecc-CCcccCCHHHHHHHHHhhcCCCCccCcc
Q 020075          209 KMYSCDKCHKKSFSVVSDLRSHYK--NCGESR--------WKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVD  270 (331)
Q Consensus       209 k~~~C~~C~k~~f~~~~~L~~H~~--H~~ekp--------~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~  270 (331)
                      ..|.|..|++ .|.....|..|++  |+++++        |.|. |++.|.++..|..|+++|++++||.|..
T Consensus        24 ~~~~C~~C~k-~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   95 (95)
T 2ej4_A           24 LSRPKKSCDR-TFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSSG   95 (95)
T ss_dssp             SSSSCCCCCC-CCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSCC
T ss_pred             CCCccccccc-ccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            4588999999 9999999999997  788888        9999 9999999999999999999999999963

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=3e-13  Score=96.65  Aligned_cols=69  Identities=20%  Similarity=0.331  Sum_probs=56.2

Q ss_pred             hhcCCCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHH
Q 020075          119 ELLAEHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICV  198 (331)
Q Consensus       119 ~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l  198 (331)
                      .|+++++|+|.+|++.|.....|..|+++|++.                                               
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~-----------------------------------------------   33 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAET-----------------------------------------------   33 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHH-----------------------------------------------
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhcc-----------------------------------------------
Confidence            367899999999999999999999999998762                                               


Q ss_pred             hcccccccCCCCccCCCCCCCccCChhHhHHHhh--ccCCCceecc
Q 020075          199 KNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK--NCGESRWKCS  242 (331)
Q Consensus       199 ~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~--H~~ekp~~C~  242 (331)
                             .++++|.|.+|++ .|..+..|..|++  |.++++....
T Consensus        34 -------~~~~~~~C~~C~k-~f~~~~~L~~H~~~~H~~~~~~~~~   71 (78)
T 2d9h_A           34 -------VAALRFPCEFCGK-RFEKPDSVAAHRSKSHPALLLAPQE   71 (78)
T ss_dssp             -------TTTCCEECTTTCC-EESSHHHHHHHHHHTSTTTSSCCSS
T ss_pred             -------CCCcccCCCCCCc-hhCCHHHHHHHHHHhCCCCCCCccc
Confidence                   0126788888888 8999999999985  7888776654

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.36  E-value=3.1e-13  Score=93.23  Aligned_cols=60  Identities=25%  Similarity=0.499  Sum_probs=48.9

Q ss_pred             hhhcCCCccccccchhhccCHHHHHHHHHH-h-cCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccH
Q 020075          118 VELLAEHIHFCDICGKGFKRDANLRMHMRA-H-GDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSV  195 (331)
Q Consensus       118 ~~h~~~~~~~C~~C~k~F~~~~~L~~H~~~-H-~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~  195 (331)
                      ++|.+++||.|++|++.|.....|..|++. | .++                                            
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~--------------------------------------------   38 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNV--------------------------------------------   38 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSC--------------------------------------------
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCC--------------------------------------------
Confidence            568889999999999999999999999987 5 344                                            


Q ss_pred             HHHhcccccccCCCCccCCCCCCCccCChhHhHHHhh-ccC
Q 020075          196 ICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCG  235 (331)
Q Consensus       196 ~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~  235 (331)
                                   ++|.|+.|++ .|.+++.|..|++ |++
T Consensus        39 -------------~~~~C~~C~k-~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A           39 -------------KVYPCPFCFK-EFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             -------------CCEECTTTCC-EESCHHHHHHHHHHHTC
T ss_pred             -------------cCeECCCCCC-ccCCHHHHHHHHHHHcC
Confidence                         6677777887 7888888888887 654

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.35  E-value=4.1e-13  Score=89.66  Aligned_cols=30  Identities=33%  Similarity=0.671  Sum_probs=21.4

Q ss_pred             CCCccccccchhhccCHHHHHHHHHHhcCC
Q 020075          122 AEHIHFCDICGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       122 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      |+++|.|.+|++.|.....|..|+++|+++
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   30 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGE   30 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCC
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCC
Confidence            357888888888888888888888888776

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.33  E-value=1e-12  Score=87.72  Aligned_cols=55  Identities=31%  Similarity=0.633  Sum_probs=41.6

Q ss_pred             ccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHHhccccc
Q 020075          125 IHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKR  204 (331)
Q Consensus       125 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~H~~~  204 (331)
                      ||.|.+|++.|.....|..|+++|+++                                                     
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------------------------------------   27 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDV-----------------------------------------------------   27 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSC-----------------------------------------------------
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCC-----------------------------------------------------
Confidence            567777777777777777777777665                                                     


Q ss_pred             ccCCCCccCCCCCCCccCChhHhHHHhh-ccCCC
Q 020075          205 SHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGES  237 (331)
Q Consensus       205 h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ek  237 (331)
                          ++|.|++|++ .|.....|..|++ |++++
T Consensus        28 ----~~~~C~~C~~-~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A           28 ----RPYHCTYCNF-SFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             ----CCEECSSSSC-EESSHHHHHHHHHSSSSCC
T ss_pred             ----CCccCCCCCc-hhcCHHHHHHHHHHhcccC
Confidence                6777888888 8888888888888 77765

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1e-12  Score=83.75  Aligned_cols=43  Identities=30%  Similarity=0.529  Sum_probs=30.7

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      .|++ |++++||.|. |++.|.++..|.+|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3666 7777777777 77777777777777777777777777654

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.31  E-value=9.7e-13  Score=83.90  Aligned_cols=42  Identities=26%  Similarity=0.561  Sum_probs=26.5

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      |++ |++++||.|. |++.|.++..|.+|+++|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            555 6666666666 66666666666666666666666666543

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=1.2e-12  Score=82.52  Aligned_cols=42  Identities=26%  Similarity=0.417  Sum_probs=31.3

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      |++ |++++||.|. |++.|.+++.|..|+++|++++||.|..|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            566 7777777777 77777777777777777777777777654

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.1e-12  Score=83.63  Aligned_cols=42  Identities=33%  Similarity=0.569  Sum_probs=25.9

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      |++ |++++||.|. |++.|.+...|.+|+++|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            555 6666666666 66666666666666666666666666543

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=9.8e-13  Score=83.84  Aligned_cols=42  Identities=29%  Similarity=0.558  Sum_probs=25.6

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             ccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            555 6666666666 66666666666666666666666666543

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1e-12  Score=83.70  Aligned_cols=43  Identities=26%  Similarity=0.563  Sum_probs=30.2

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      +|++ |++++||.|. |++.|.++..|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            3666 7777777777 77777777777777777777777777654

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.2e-12  Score=83.47  Aligned_cols=43  Identities=33%  Similarity=0.590  Sum_probs=29.5

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      .|++ |++++||.|. |++.|.++..|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            3566 6777777777 77777777777777777777777776654

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.3e-12  Score=83.26  Aligned_cols=43  Identities=23%  Similarity=0.492  Sum_probs=29.6

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      +|++ |++++||.|. |++.|.+...|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3666 6777777777 77777777777777777777777776643

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.1e-12  Score=83.63  Aligned_cols=43  Identities=23%  Similarity=0.427  Sum_probs=28.8

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      .|++ |++++||.|. |++.|.+.+.|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            3566 6666667776 77777777777777666666666666554

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.30  E-value=1.1e-12  Score=83.69  Aligned_cols=42  Identities=33%  Similarity=0.632  Sum_probs=25.3

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            555 6666666666 66666666666666666666666666543

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.2e-12  Score=83.47  Aligned_cols=43  Identities=26%  Similarity=0.452  Sum_probs=28.9

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      .|++ |++++||.|. |++.|.+...|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3566 6666677776 77777777777777777777777666554

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.6e-12  Score=82.86  Aligned_cols=43  Identities=33%  Similarity=0.613  Sum_probs=28.2

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      .|++ |++++||.|. |++.|.++..|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3556 6666666666 66666666666666666666666666554

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.4e-12  Score=83.05  Aligned_cols=42  Identities=31%  Similarity=0.559  Sum_probs=28.8

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            566 6667777777 77777777777777777777777766654

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.4e-12  Score=83.09  Aligned_cols=42  Identities=31%  Similarity=0.461  Sum_probs=25.6

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            555 6666666666 66666666666666666666666666543

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.3e-12  Score=83.24  Aligned_cols=43  Identities=28%  Similarity=0.564  Sum_probs=29.2

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      .|++ |++++||.|. |++.|.++..|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            3566 6677777777 77777777777777777777777766654

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.4e-12  Score=83.12  Aligned_cols=42  Identities=26%  Similarity=0.512  Sum_probs=24.4

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            455 5555556665 66666666666666555655556555543

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.29  E-value=9.4e-13  Score=87.12  Aligned_cols=50  Identities=18%  Similarity=0.168  Sum_probs=45.3

Q ss_pred             CCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCcc
Q 020075          217 HKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEV  267 (331)
Q Consensus       217 ~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~  267 (331)
                      +| .|.....|..|++ |++++||.|. |++.|.+.+.|..|+++|++++||.
T Consensus         3 ~k-~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AK-RAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CC-CCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             cc-ccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            35 7888889999999 9999999999 9999999999999999999999874

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.2e-12  Score=83.34  Aligned_cols=42  Identities=26%  Similarity=0.544  Sum_probs=26.5

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      |++ |++++||.|. |++.|.++..|.+|+++|++++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            555 6666666666 66666666666666666666666666543

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.1e-12  Score=83.68  Aligned_cols=42  Identities=29%  Similarity=0.377  Sum_probs=23.6

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|++.|+++++|.|++|++ .|..++.|..|++ |++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGK-VFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCC-BCSSHHHHHHHGGGTSCCCCCSCC
T ss_pred             CCCcCCCCCcCeECCCCCC-eeCCHHHHHHHhhhcCCCCCCCCC
Confidence            3555555555555555555 5555555555555 5555555555

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.3e-12  Score=83.37  Aligned_cols=41  Identities=27%  Similarity=0.569  Sum_probs=22.1

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCcc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVD  270 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~  270 (331)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            444 5555555555 5555555555555555555555555543

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.28  E-value=1e-12  Score=83.70  Aligned_cols=41  Identities=27%  Similarity=0.425  Sum_probs=20.2

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCcc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVD  270 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~  270 (331)
                      |++ |++++||.|. |++.|.+.+.|..|+++|++++||.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2el4_A            3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTT
T ss_pred             cccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            444 4444555555 5555555555555555555555554443

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.28  E-value=1.5e-12  Score=83.06  Aligned_cols=42  Identities=33%  Similarity=0.565  Sum_probs=23.5

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      |++ |++++||.|. |++.|.++..|.+|+++|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            445 5555555555 55555555555555555555555555443

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.5e-12  Score=83.01  Aligned_cols=42  Identities=26%  Similarity=0.506  Sum_probs=23.4

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      |++ |++++||.|. |++.|.+++.|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            445 5555555555 55555555555555555555555555443

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.2e-12  Score=83.30  Aligned_cols=41  Identities=32%  Similarity=0.344  Sum_probs=21.0

Q ss_pred             ccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          201 HFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      |++.|+++++|.|++|++ .|..+..|..|++ |++++||.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGK-SFSFNSQLIVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCC-BCSSHHHHHHHHTTTTTSCCSCCC
T ss_pred             CccccCCCCCeeCCCCCc-hhCCHHHHHHHHHHcCCCCCCCCC
Confidence            444555555555555555 4555555555555 5555555554

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.28  E-value=1.1e-12  Score=83.58  Aligned_cols=42  Identities=29%  Similarity=0.392  Sum_probs=23.5

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|+++|++++||.|++|++ .|..++.|..|++ |++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDM-CFSQASSLRLHQNVHVGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCC-CCSSHHHHHHHGGGGSSSSCSCSS
T ss_pred             CCcCccCCCcCeECCCCCc-ccCCHHHHHHHHHHcCCCCCcCCC
Confidence            3555555555555555555 5555555555555 5555555555

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.6e-12  Score=82.76  Aligned_cols=41  Identities=29%  Similarity=0.571  Sum_probs=22.6

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCcc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVD  270 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~  270 (331)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            444 5555555555 5555555555555555555555555544

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.7e-12  Score=82.71  Aligned_cols=41  Identities=27%  Similarity=0.326  Sum_probs=20.9

Q ss_pred             ccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          201 HFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      |++.|+++++|.|++|++ .|..+..|..|++ |++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGK-AFSDHIGLNQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCC-CBSSHHHHHHHHTTTTTCCCCSSC
T ss_pred             CCCCcCCCCCeECCCCCc-eeCCHHHHHHHHHHhCCCCCCCCC
Confidence            444555555555555555 4555555555555 5555555554

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=1.4e-12  Score=83.18  Aligned_cols=41  Identities=22%  Similarity=0.432  Sum_probs=22.0

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCcc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVD  270 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~  270 (331)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|..
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em5_A            3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCC
T ss_pred             CcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            444 5555555555 5555555555555555555555555544

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.6e-12  Score=82.84  Aligned_cols=41  Identities=24%  Similarity=0.390  Sum_probs=22.1

Q ss_pred             ccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          201 HFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      |+++|++++||.|++|++ .|..+..|..|++ |++++||.|.
T Consensus         3 h~~~h~~~k~~~C~~C~k-~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGK-GYNRRLNLDMHQRVHMGEKTSGPS   44 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCC-BCSSHHHHHHHGGGGGSCCCCCSC
T ss_pred             CCCCCCCCCCeeCcccCc-hhCCHHHHHHHHHhcCCCCCCCCC
Confidence            445555555555555555 5555555555555 5555555554

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=1.4e-12  Score=83.02  Aligned_cols=41  Identities=22%  Similarity=0.314  Sum_probs=21.2

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCcc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVD  270 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~  270 (331)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|..
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            444 5555555555 5555555555555555555555555543

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.9e-12  Score=82.55  Aligned_cols=41  Identities=32%  Similarity=0.555  Sum_probs=20.6

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCcc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVD  270 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~  270 (331)
                      |++ |++++||.|. |++.|.++..|.+|+++|++++||.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS   45 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCC
Confidence            444 4555555555 5555555555555555555555555443

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.8e-12  Score=82.59  Aligned_cols=43  Identities=30%  Similarity=0.526  Sum_probs=32.0

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      .|++ |++++||.|. |++.|.+...|..|+++|++++||.|..|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            3666 7777777777 77777777777777777777777777654

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=3e-12  Score=81.54  Aligned_cols=43  Identities=26%  Similarity=0.543  Sum_probs=41.0

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      .|++ |++++||.|. |++.|.++..|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            4888 9999999999 99999999999999999999999999876

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.6e-12  Score=82.82  Aligned_cols=42  Identities=24%  Similarity=0.363  Sum_probs=26.1

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            555 6666666666 66666666666666666666666666543

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.5e-12  Score=83.02  Aligned_cols=41  Identities=27%  Similarity=0.665  Sum_probs=25.5

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCcc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVD  270 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~  270 (331)
                      |++ |++++||.|. |++.|.++..|.+|+++|++++||.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTC
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            555 6666666666 6666666666666666666666666653

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=1.7e-12  Score=82.64  Aligned_cols=41  Identities=27%  Similarity=0.575  Sum_probs=21.7

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCcc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVD  270 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~  270 (331)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            444 5555555555 5555555555555555555555555544

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=2.5e-12  Score=81.92  Aligned_cols=42  Identities=21%  Similarity=0.313  Sum_probs=28.8

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            556 6667777777 77777777777777777777777766654

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=2.4e-12  Score=81.96  Aligned_cols=42  Identities=24%  Similarity=0.515  Sum_probs=27.5

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|..|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            555 6666666666 66666666666666666666666666544

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.27  E-value=2.7e-12  Score=81.76  Aligned_cols=43  Identities=30%  Similarity=0.521  Sum_probs=41.0

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      .|++ |++++||.|. |++.|.++..|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            4888 9999999999 99999999999999999999999999875

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.2e-12  Score=83.49  Aligned_cols=42  Identities=26%  Similarity=0.526  Sum_probs=24.5

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            455 5555666665 66666666666666666666666655543

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.4e-12  Score=83.11  Aligned_cols=42  Identities=31%  Similarity=0.449  Sum_probs=23.1

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|+++|+++++|.|++|++ .|..+..|..|++ |++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGK-AFSQTSKLARHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCC-CCSSHHHHHHHHTTTTTCSCCCSC
T ss_pred             CCCcCCCCCcCcCCCCCCC-ccCCHHHHHHHHHhcCCCCCCCCC
Confidence            3555555555555555555 5555555555555 5555555555

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.9e-12  Score=82.41  Aligned_cols=42  Identities=24%  Similarity=0.506  Sum_probs=23.0

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            445 5555555555 55555555555555555555555555443

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.7e-12  Score=82.70  Aligned_cols=42  Identities=26%  Similarity=0.582  Sum_probs=26.0

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             cccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            555 6666666666 66666666666666666666666666543

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2.2e-12  Score=82.24  Aligned_cols=42  Identities=26%  Similarity=0.495  Sum_probs=26.0

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      |++ |++++||.|. |++.|.+...|.+|+++|++++||.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            455 6666666666 66666666666666666666666666543

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.27  E-value=2.5e-12  Score=81.94  Aligned_cols=43  Identities=28%  Similarity=0.393  Sum_probs=41.4

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      +|++.|++++||.|++|++ .|..++.|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGK-AFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCC-BCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCc-hhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999998 7

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.27  E-value=2e-12  Score=82.35  Aligned_cols=41  Identities=27%  Similarity=0.524  Sum_probs=21.3

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCcc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVD  270 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~  270 (331)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCC
Confidence            444 5555555555 5555555555555555555555555543

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=5.3e-12  Score=93.44  Aligned_cols=76  Identities=16%  Similarity=0.100  Sum_probs=66.0

Q ss_pred             hhccCCcccccCCCc-cceeCCCCCCccccccCCccccccHHHHhccccc-ccCCCC--------ccCCCCCCCccCChh
Q 020075          156 QALAKPEKGSVSGRK-TRFSCPYDGCNRNKKHKKFRALKSVICVKNHFKR-SHCPKM--------YSCDKCHKKSFSVVS  225 (331)
Q Consensus       156 ~~~~~~~~c~~C~~~-~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~H~~~-h~~~k~--------~~C~~C~k~~f~~~~  225 (331)
                      ..+...+.|...... ..|.|..|+          +.|.....|.+|++. |.++++        |.|.+|++ .|..+.
T Consensus         8 ~~~~~~~~c~~~~~~~~~~~C~~C~----------k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k-~f~~~~   76 (95)
T 2ej4_A            8 QPIKQELSCKWIDEAQLSRPKKSCD----------RTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGK-SFKAKY   76 (95)
T ss_dssp             CCCCCCCCCCCCCSSCSSSSCCCCC----------CCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTC-CCSSHH
T ss_pred             CCCCCCceeEeecCCcCCCcccccc----------cccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCc-ccCCHH
Confidence            445567788776433 347899999          999999999999998 888877        99999999 999999


Q ss_pred             HhHHHhh-ccCCCceecc
Q 020075          226 DLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       226 ~L~~H~~-H~~ekp~~C~  242 (331)
                      .|..|++ |++++||.|.
T Consensus        77 ~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           77 KLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             HHHHHHHHHHTCCCCSSC
T ss_pred             HHHHHHHhcCCCCCCCCC
Confidence            9999999 9999999995

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.7e-12  Score=82.73  Aligned_cols=44  Identities=25%  Similarity=0.321  Sum_probs=41.9

Q ss_pred             hcccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          199 KNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       199 ~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      ++|++.|++++||.|++|++ .|..++.|..|++ |++++||.|. |
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k-~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            1 GSSGSSGSGERPYGCNECGK-NFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCCCEECSSSCC-EESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCCEEccccCc-ccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            36899999999999999999 9999999999999 9999999998 8

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=3.2e-12  Score=81.34  Aligned_cols=43  Identities=30%  Similarity=0.497  Sum_probs=41.0

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      +|++ |++++||.|. |++.|.++..|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5888 9999999999 99999999999999999999999999876

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.26  E-value=2.6e-12  Score=81.78  Aligned_cols=43  Identities=28%  Similarity=0.365  Sum_probs=41.4

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      +|++.|+++++|.|++|++ .|..++.|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAK-TFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSC-EESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCc-hhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999999 8

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2e-12  Score=82.37  Aligned_cols=42  Identities=26%  Similarity=0.460  Sum_probs=26.4

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|..|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            555 6666666666 66666666666666666666666666544

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.26  E-value=2.8e-12  Score=79.91  Aligned_cols=40  Identities=33%  Similarity=0.630  Sum_probs=29.0

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEV  269 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~  269 (331)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            556 7777777777 777777777777777777777777763

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.9e-12  Score=81.60  Aligned_cols=43  Identities=28%  Similarity=0.279  Sum_probs=41.4

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      +|++.|+++++|.|++|++ .|..++.|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGK-SFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCC-CCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCc-hhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999998 8

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=2.4e-12  Score=82.05  Aligned_cols=43  Identities=23%  Similarity=0.369  Sum_probs=41.5

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      +|++.|+++++|.|++|++ .|..++.|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGR-GFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCC-EESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCC-ccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999999 8

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.8e-12  Score=81.65  Aligned_cols=43  Identities=26%  Similarity=0.336  Sum_probs=41.4

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      +|++.|+++++|.|++|++ .|..++.|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGK-AFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCC-EESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCC-ccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999998 8

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.26  E-value=2.8e-12  Score=81.66  Aligned_cols=43  Identities=33%  Similarity=0.404  Sum_probs=41.4

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      +|++.|+++++|.|++|++ .|..++.|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGK-VFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCC-EESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcc-hhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999998 7

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=3e-12  Score=81.55  Aligned_cols=42  Identities=24%  Similarity=0.394  Sum_probs=28.8

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            556 6677777777 77777777777777777777777776654

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=3.1e-12  Score=81.42  Aligned_cols=43  Identities=30%  Similarity=0.406  Sum_probs=41.4

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      +|++.|++++||.|++|++ .|..+..|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGK-SFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTB-CCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCC-ccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            5889999999999999999 9999999999999 9999999999 8

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.6e-12  Score=81.79  Aligned_cols=43  Identities=30%  Similarity=0.370  Sum_probs=41.4

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      +|++.|+++++|.|++|++ .|..++.|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGK-SFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCC-EESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCc-ccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999998 7

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.26  E-value=4.3e-12  Score=85.59  Aligned_cols=27  Identities=33%  Similarity=0.657  Sum_probs=20.9

Q ss_pred             CCccCCCCCCCccCChhHhHHHh-h-ccCC
Q 020075          209 KMYSCDKCHKKSFSVVSDLRSHY-K-NCGE  236 (331)
Q Consensus       209 k~~~C~~C~k~~f~~~~~L~~H~-~-H~~e  236 (331)
                      ++|.|++|++ .|.++..|..|+ + |+++
T Consensus        29 ~~~~C~~C~~-~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A           29 KPYPCGLCNR-AFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CSEECTTTCC-EESSHHHHHHHHTTTSCCS
T ss_pred             CCccCCCCCC-ccCCHHHHHHHHHHHcCCc
Confidence            6788888888 888888888886 4 7654

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.8e-12  Score=81.60  Aligned_cols=43  Identities=28%  Similarity=0.410  Sum_probs=41.5

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      +|++.|++++||.|++|++ .|..+..|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGK-AFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCC-EESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCCh-hhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999999 8

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=3.8e-12  Score=80.99  Aligned_cols=43  Identities=33%  Similarity=0.593  Sum_probs=41.0

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      .|++ |++++||.|. |++.|.+...|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            4888 9999999999 99999999999999999999999999876

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.25  E-value=3e-12  Score=81.54  Aligned_cols=42  Identities=29%  Similarity=0.441  Sum_probs=24.6

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            445 5556666666 66666666666666666666666655543

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.7e-12  Score=81.75  Aligned_cols=43  Identities=26%  Similarity=0.335  Sum_probs=41.4

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      +|++.|+++++|.|++|++ .|..++.|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGK-AFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCC-EESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCCh-hhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999998 7

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=5.4e-14  Score=98.87  Aligned_cols=32  Identities=22%  Similarity=0.280  Sum_probs=22.6

Q ss_pred             hhhhhhhhhhcCCCccccccchhhccCHHHHH
Q 020075          111 EIVEIDAVELLAEHIHFCDICGKGFKRDANLR  142 (331)
Q Consensus       111 ~~l~~h~~~h~~~~~~~C~~C~k~F~~~~~L~  142 (331)
                      ..|..|+++|.++++|.|.+||+.|.....|.
T Consensus         4 ~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~   35 (73)
T 2ctu_A            4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLS   35 (73)
T ss_dssp             CSCCCCCCCCCCCSEEECSSSCCEEECCCCCC
T ss_pred             hhHHHHHHHhCCCCCeeCCcccchhCCHHHhC
Confidence            34667777777778888888877777655543

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=3.6e-12  Score=81.11  Aligned_cols=43  Identities=35%  Similarity=0.421  Sum_probs=41.4

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      +|++.|++++||.|++|++ .|..+..|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGK-SFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCC-BCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccCh-hhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999999 8

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=3.3e-12  Score=81.27  Aligned_cols=43  Identities=30%  Similarity=0.403  Sum_probs=41.4

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      +|++.|++++||.|++|++ .|...+.|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGK-NFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCC-EESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCc-ccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999999 8

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=3.1e-12  Score=81.50  Aligned_cols=42  Identities=33%  Similarity=0.517  Sum_probs=33.9

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCcc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVD  270 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~  270 (331)
                      +|++ |++++||.|. |++.|.++..|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            4777 8888888888 8888888888888888888888888763

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=3.4e-12  Score=81.27  Aligned_cols=43  Identities=28%  Similarity=0.315  Sum_probs=41.3

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      +|++.|++++||.|++|++ .|..++.|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGK-VFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCC-EESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCc-hhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5889999999999999999 9999999999999 9999999998 7

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=3.3e-12  Score=81.37  Aligned_cols=43  Identities=28%  Similarity=0.357  Sum_probs=41.2

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      .|++.|++++||.|++|++ .|..+..|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGK-AFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCC-EESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCc-hhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5889999999999999999 9999999999999 9999999998 7

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=4.3e-12  Score=80.82  Aligned_cols=41  Identities=27%  Similarity=0.573  Sum_probs=30.4

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCcc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVD  270 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~  270 (331)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            666 7777777777 7777777777777777777777777754

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.9e-12  Score=81.56  Aligned_cols=43  Identities=23%  Similarity=0.291  Sum_probs=41.4

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      +|++.|+++++|.|++|++ .|..++.|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGK-SFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCC-EESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCCh-hhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5889999999999999999 9999999999999 9999999999 8

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=5e-12  Score=80.51  Aligned_cols=43  Identities=23%  Similarity=0.360  Sum_probs=40.8

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      .|++ |++++||.|. |++.|.++..|..|+++|++++||.|..|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            3788 9999999999 99999999999999999999999999876

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.8e-12  Score=81.67  Aligned_cols=43  Identities=33%  Similarity=0.413  Sum_probs=41.4

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      +|++.|+++++|.|++|++ .|..++.|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGK-AFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCC-EESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCc-hhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999999 8

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.9e-12  Score=81.58  Aligned_cols=43  Identities=28%  Similarity=0.358  Sum_probs=41.4

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      +|++.|++++||.|++|++ .|..++.|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGK-AFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCC-EESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCc-ccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999999 8

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.24  E-value=4.2e-12  Score=80.86  Aligned_cols=42  Identities=31%  Similarity=0.559  Sum_probs=34.6

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCcc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVD  270 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~  270 (331)
                      .|++ |++++||.|. |++.|.++..|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4777 8888888888 8888888888888888888888888863

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3.6e-12  Score=81.12  Aligned_cols=43  Identities=28%  Similarity=0.345  Sum_probs=41.3

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      .|++.|+++++|.|++|++ .|..++.|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGK-VFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCC-EESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCc-hhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            5889999999999999999 9999999999999 9999999999 8

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3e-12  Score=81.49  Aligned_cols=43  Identities=26%  Similarity=0.349  Sum_probs=41.3

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      +|++.|+++++|.|++|++ .|..++.|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGK-VFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTE-ECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcCh-hhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5889999999999999999 9999999999999 9999999999 8

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=5e-12  Score=80.48  Aligned_cols=43  Identities=28%  Similarity=0.461  Sum_probs=40.8

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      .|++ |++++||.|. |++.|.+...|.+|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3788 9999999999 99999999999999999999999999876

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.3e-12  Score=83.33  Aligned_cols=42  Identities=24%  Similarity=0.358  Sum_probs=23.8

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|++.|+++++|.|++|++ .|..++.|..|++ |++++||.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGK-SYNQRVHLTQHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCC-EESSSHHHHTTGGGGSSCCSSCSC
T ss_pred             CCCCCCCCCCCeECCCCCc-ccCCHHHHHHHHHHcCCCCCCCCC
Confidence            3555555555555555555 5555555555555 5555555555

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=4.2e-12  Score=80.85  Aligned_cols=42  Identities=26%  Similarity=0.504  Sum_probs=33.5

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCcc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVD  270 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~  270 (331)
                      .|++ |++++||.|. |++.|.+...|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            3677 8888888888 8888888888888888888888888753

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=4.8e-12  Score=78.79  Aligned_cols=39  Identities=21%  Similarity=0.456  Sum_probs=27.9

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccC
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVE  268 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c  268 (331)
                      |++ |++++||.|. |++.|.+.+.|..|+++|++++||.|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            456 7777777777 77777777777777777777777766

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3.9e-12  Score=80.94  Aligned_cols=42  Identities=31%  Similarity=0.540  Sum_probs=34.2

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCcc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVD  270 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~  270 (331)
                      .|++ |++++||.|. |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            4677 8888888888 8888888888888888888888888863

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3.1e-12  Score=81.48  Aligned_cols=43  Identities=28%  Similarity=0.338  Sum_probs=41.4

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      +|++.|+++++|.|++|++ .|..+..|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGK-AFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCC-EESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCc-hhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999998 7

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3.7e-12  Score=81.16  Aligned_cols=42  Identities=21%  Similarity=0.387  Sum_probs=35.9

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCcc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVD  270 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~  270 (331)
                      +|++ |++++||.|. |++.|.+...|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4778 8888888888 8888888888888888888888888864

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=4.3e-12  Score=80.83  Aligned_cols=40  Identities=18%  Similarity=0.368  Sum_probs=29.4

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEV  269 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~  269 (331)
                      |++ |++++||.|. |++.|.+...|.+|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            566 7777777777 777777777777777777777777775

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3.7e-12  Score=81.11  Aligned_cols=43  Identities=23%  Similarity=0.325  Sum_probs=41.4

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      +|++.|++++||.|++|++ .|..+..|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGK-AFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCC-EESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCC-eeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999999 8

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=4.1e-12  Score=80.87  Aligned_cols=42  Identities=26%  Similarity=0.503  Sum_probs=33.2

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCcc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVD  270 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~  270 (331)
                      .|++ |++++||.|. |++.|.+...|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4677 8888888888 8888888888888888888888888753

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.24  E-value=4.4e-12  Score=80.68  Aligned_cols=43  Identities=30%  Similarity=0.364  Sum_probs=41.3

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      .|++.|++++||.|++|++ .|..+..|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGK-SFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCC-EESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCcccc-ccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            5889999999999999999 9999999999999 9999999998 8

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.24  E-value=4.1e-12  Score=80.90  Aligned_cols=43  Identities=30%  Similarity=0.332  Sum_probs=41.2

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      .|+++|+++++|.|++|++ .|..+..|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGK-GFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCC-CBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCc-ccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5889999999999999999 9999999999999 9999999999 8

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3e-12  Score=81.53  Aligned_cols=43  Identities=28%  Similarity=0.405  Sum_probs=41.5

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      +|+++|+++++|.|++|++ .|..++.|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGK-RFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTE-EESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCc-ccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999998 8

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=5.5e-12  Score=80.30  Aligned_cols=43  Identities=30%  Similarity=0.363  Sum_probs=41.1

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      .|++.|+++++|.|++|++ .|..++.|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGK-AFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCC-BCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccCh-hhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            4788999999999999999 9999999999999 9999999998 8

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3.4e-12  Score=81.28  Aligned_cols=43  Identities=28%  Similarity=0.440  Sum_probs=41.4

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      +|++.|+++++|.|++|++ .|..++.|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGK-VFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCC-EESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCC-ccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999998 7

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.9e-12  Score=81.60  Aligned_cols=43  Identities=26%  Similarity=0.349  Sum_probs=41.4

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      +|++.|++++||.|++|++ .|..++.|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGK-VFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCC-EESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCc-hhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            5889999999999999999 9999999999999 9999999999 8

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.23  E-value=5.5e-12  Score=88.48  Aligned_cols=57  Identities=28%  Similarity=0.545  Sum_probs=52.0

Q ss_pred             ccccCCCCccCCC--CCCCccCChhHhHHHhh-ccCCCceec--c-CCcccCCHHHHHHHHHhh
Q 020075          203 KRSHCPKMYSCDK--CHKKSFSVVSDLRSHYK-NCGESRWKC--S-CGTSFSRKDKLFGHVALF  260 (331)
Q Consensus       203 ~~h~~~k~~~C~~--C~k~~f~~~~~L~~H~~-H~~ekp~~C--~-C~k~F~~~~~L~~H~~~H  260 (331)
                      ..+...++|.|..  |++ .|.....|..|++ |++++||.|  . |++.|.+...|.+|+++|
T Consensus        10 ~~~~~~~~~~C~~~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           10 IDSSRIRSHICSHPGCGK-TYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCCEECSSTTTCC-EESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CCccccCceeCCCCCCcc-ccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            3445568999988  999 9999999999999 999999999  6 999999999999999876

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=3.6e-12  Score=80.32  Aligned_cols=42  Identities=29%  Similarity=0.279  Sum_probs=40.3

Q ss_pred             ccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          201 HFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      |++.|++++||.|++|++ .|..++.|..|++ |++++||.|. |
T Consensus         1 H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEK-AFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSC-EESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCc-ccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            678899999999999999 9999999999999 9999999998 7

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=4.9e-12  Score=80.53  Aligned_cols=43  Identities=28%  Similarity=0.369  Sum_probs=41.2

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      .|++.|+++++|.|++|++ .|..+..|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGK-GFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCC-EESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccc-hhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5888999999999999999 9999999999999 9999999999 8

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3.8e-12  Score=81.01  Aligned_cols=43  Identities=21%  Similarity=0.242  Sum_probs=41.4

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      +|++.|+++++|.|++|++ .|..++.|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGK-AFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCC-EESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCC-ccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999999 8

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=4.1e-12  Score=80.94  Aligned_cols=40  Identities=33%  Similarity=0.649  Sum_probs=28.3

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEV  269 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~  269 (331)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            566 7777777777 777777777777777777777777765

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3.5e-12  Score=81.24  Aligned_cols=43  Identities=28%  Similarity=0.536  Sum_probs=41.1

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      +|++ |++++||.|. |++.|.++..|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5888 9999999999 99999999999999999999999999876

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3.5e-12  Score=81.22  Aligned_cols=40  Identities=28%  Similarity=0.607  Sum_probs=26.7

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEV  269 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~  269 (331)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            556 6666666666 666666666666666666666666664

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=5.1e-12  Score=80.42  Aligned_cols=43  Identities=30%  Similarity=0.379  Sum_probs=41.1

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      +|++.|+++++|.|++|++ .|..+..|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGK-AFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCC-EESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCc-hhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999998 5

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=6.2e-12  Score=79.12  Aligned_cols=41  Identities=24%  Similarity=0.433  Sum_probs=29.8

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEV  269 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~  269 (331)
                      .|++ |++++||.|. |++.|.+...|..|+++|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            3666 7777777777 777777777777777777777777763

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.22  E-value=5.7e-12  Score=88.57  Aligned_cols=34  Identities=24%  Similarity=0.432  Sum_probs=29.3

Q ss_pred             hhhcCCCccccc--cchhhccCHHHHHHHHHHhcCC
Q 020075          118 VELLAEHIHFCD--ICGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       118 ~~h~~~~~~~C~--~C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      ..|.++++|.|+  .|++.|.....|..|+++|+++
T Consensus        12 ~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~   47 (73)
T 1f2i_G           12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQ   47 (73)
T ss_dssp             CCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCC
T ss_pred             ccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCC
Confidence            366788999997  5999999999999999998876

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=4.7e-12  Score=80.91  Aligned_cols=42  Identities=21%  Similarity=0.474  Sum_probs=31.6

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHH-hhcCCCCccCccc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVA-LFEGHMPEVEVDE  271 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~-~H~~e~p~~c~~~  271 (331)
                      |++ |++++||.|. |++.|.+...|..|++ +|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            666 7777777777 7777777777777777 7777777777654

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=5.7e-12  Score=80.17  Aligned_cols=42  Identities=29%  Similarity=0.501  Sum_probs=32.9

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCcc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVD  270 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~  270 (331)
                      .|++ |++++||.|. |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3667 7888888888 8888888888888888888888887753

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=5.5e-12  Score=80.26  Aligned_cols=40  Identities=30%  Similarity=0.571  Sum_probs=30.0

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEV  269 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~  269 (331)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            666 7777777777 777777777777777777777777775

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=6.2e-12  Score=79.98  Aligned_cols=42  Identities=26%  Similarity=0.539  Sum_probs=34.3

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCcc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVD  270 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~  270 (331)
                      .|++ |++++||.|. |++.|.+...|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            4777 8888888888 8888888888888888888888888853

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=4.3e-12  Score=80.75  Aligned_cols=41  Identities=34%  Similarity=0.609  Sum_probs=28.1

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEV  269 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~  269 (331)
                      .|++ |++++||.|. |++.|.++..|..|+++|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3566 6667777777 777777777777777777777777665

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=3.4e-12  Score=81.24  Aligned_cols=40  Identities=28%  Similarity=0.562  Sum_probs=23.7

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEV  269 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~  269 (331)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            455 5556666666 666666666666666666666666554

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.22  E-value=6e-12  Score=80.13  Aligned_cols=43  Identities=26%  Similarity=0.258  Sum_probs=41.1

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      +|++.|+++++|.|++|++ .|..+..|..|++ |++++||.|. |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEK-SFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSC-EESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCc-ccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5788999999999999999 9999999999999 9999999998 8

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=4e-12  Score=80.98  Aligned_cols=40  Identities=25%  Similarity=0.591  Sum_probs=23.5

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEV  269 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~  269 (331)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            455 5555556665 666666666666665556555555554

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=4.1e-12  Score=80.84  Aligned_cols=42  Identities=31%  Similarity=0.542  Sum_probs=29.5

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCcc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVD  270 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~  270 (331)
                      .|++ |++++||.|. |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            3566 7777777777 7777777777777777777777777653

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=5.1e-12  Score=87.17  Aligned_cols=57  Identities=23%  Similarity=0.448  Sum_probs=47.2

Q ss_pred             CCCCccCCCCCCCccCChhHhHHHhhccCCCceecc--CCcccCCHHHHHHHHHhhcCCCC
Q 020075          207 CPKMYSCDKCHKKSFSVVSDLRSHYKNCGESRWKCS--CGTSFSRKDKLFGHVALFEGHMP  265 (331)
Q Consensus       207 ~~k~~~C~~C~k~~f~~~~~L~~H~~H~~ekp~~C~--C~k~F~~~~~L~~H~~~H~~e~p  265 (331)
                      +++||.|..|++ .|. ++.|..|++.++++||.|.  |++.|..++.|..|+++|...+|
T Consensus         7 ~~~~~~C~~C~k-~f~-~~~L~~H~~~~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            7 GKRTQPCTYCTK-EFV-FDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCEEECSSSCC-EEE-HHHHHHHHHHCSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCCeeccccCC-ccC-HHHHHHHHHHcCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            347888888888 888 8888888776778888886  88888888888888888876655

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=5.3e-12  Score=79.55  Aligned_cols=39  Identities=23%  Similarity=0.439  Sum_probs=26.9

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccC
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVE  268 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c  268 (331)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            566 6666777776 77777777777777777776666666

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=5.2e-12  Score=78.67  Aligned_cols=39  Identities=31%  Similarity=0.596  Sum_probs=28.1

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccC
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVE  268 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c  268 (331)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            556 7777777777 77777777777777777777777765

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=6.6e-12  Score=79.91  Aligned_cols=43  Identities=26%  Similarity=0.338  Sum_probs=41.1

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      .|+++|++++||.|++|++ .|..++.|..|++ |++++||.|. |
T Consensus         2 ~h~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGK-GFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCC-EESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCC-cCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            5788999999999999999 9999999999999 9999999999 8

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.21  E-value=8e-12  Score=77.77  Aligned_cols=39  Identities=26%  Similarity=0.468  Sum_probs=30.2

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccC
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVE  268 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c  268 (331)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            566 7777778887 88888888888888777777777776

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=6.5e-12  Score=79.92  Aligned_cols=43  Identities=19%  Similarity=0.171  Sum_probs=41.2

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      .|++.|++++||.|++|++ .|..++.|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGE-IFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCC-EESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccCh-hhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5788999999999999999 9999999999999 9999999998 8

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=6e-12  Score=80.15  Aligned_cols=40  Identities=30%  Similarity=0.563  Sum_probs=26.9

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEV  269 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~  269 (331)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            556 6666666666 666666666666666666666666664

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=5e-12  Score=79.60  Aligned_cols=39  Identities=33%  Similarity=0.635  Sum_probs=25.8

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccC
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVE  268 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c  268 (331)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            556 6666666666 66666666666666666666666665

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=6.1e-12  Score=80.14  Aligned_cols=43  Identities=23%  Similarity=0.287  Sum_probs=41.0

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      .|++.|++++||.|++|++ .|..++.|..|++ |++++||.|. |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGK-AFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTB-CCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCc-hhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4788999999999999999 9999999999999 9999999999 8

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=5.4e-12  Score=80.27  Aligned_cols=41  Identities=29%  Similarity=0.607  Sum_probs=29.8

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEV  269 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~  269 (331)
                      .|++ |++++||.|. |++.|.+...|..|+++|++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            3666 7777777777 777777777777777777777777775

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=4.9e-12  Score=80.52  Aligned_cols=40  Identities=28%  Similarity=0.574  Sum_probs=26.0

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEV  269 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~  269 (331)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            555 6666666666 666666666666666666666666664

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=5.2e-12  Score=80.39  Aligned_cols=43  Identities=28%  Similarity=0.372  Sum_probs=41.2

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      .|+++|+++++|.|++|++ .|..+..|..|++ |++++||.|. |
T Consensus         2 ~H~~~h~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGK-GYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTE-EESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCC-ccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            5889999999999999999 9999999999999 9999999998 8

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=4.3e-12  Score=80.78  Aligned_cols=43  Identities=30%  Similarity=0.396  Sum_probs=41.4

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      +|+++|+++++|.|++|++ .|..++.|..|++ |++++||.|. |
T Consensus         2 ~h~~~H~~~~~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGK-TFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTE-EESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCc-ccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999999 8

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=5.6e-12  Score=80.23  Aligned_cols=40  Identities=28%  Similarity=0.587  Sum_probs=25.2

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEV  269 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~  269 (331)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            555 6666666666 666666666666666666666666664

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=8.7e-12  Score=79.36  Aligned_cols=41  Identities=24%  Similarity=0.490  Sum_probs=30.2

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEV  269 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~  269 (331)
                      .|++ |++++||.|. |++.|.+...|..|+++|++++||.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            3566 7777777777 777777777777777777777777775

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=5.7e-12  Score=79.29  Aligned_cols=39  Identities=23%  Similarity=0.420  Sum_probs=20.1

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccC
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVE  268 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c  268 (331)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            444 5555555555 55555555555555555555555544

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=6.9e-12  Score=79.80  Aligned_cols=40  Identities=30%  Similarity=0.559  Sum_probs=26.0

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEV  269 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~  269 (331)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            555 6666666666 666666666666666666666666664

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.20  E-value=1.6e-12  Score=88.74  Aligned_cols=52  Identities=13%  Similarity=0.402  Sum_probs=44.2

Q ss_pred             HhcccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHH
Q 020075          198 VKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKL  253 (331)
Q Consensus       198 l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L  253 (331)
                      |..|++.|++++||.|+.|++ .|.....|.   + |++++||.|. |++.|....++
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k-~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSS-TFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCC-EEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTC
T ss_pred             hhhHHHHcCCCCCccCCCCCc-hhccHHHhH---hhcCCCCCEECCCCCCccccCccc
Confidence            467888999999999999999 898888776   6 9999999999 99999876554

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=6e-12  Score=80.16  Aligned_cols=40  Identities=28%  Similarity=0.566  Sum_probs=24.9

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEV  269 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~  269 (331)
                      |++ |++++||.|. |++.|.++..|.+|+++|++++||.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            455 6666666666 666666666666666666666666664

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=8.5e-12  Score=78.57  Aligned_cols=39  Identities=18%  Similarity=0.375  Sum_probs=23.3

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccC
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVE  268 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c  268 (331)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            455 5556666666 66666666666666666666666555

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=8.5e-12  Score=79.42  Aligned_cols=43  Identities=26%  Similarity=0.300  Sum_probs=41.0

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      .|+++|+++++|.|++|++ .|..+..|..|++ |++++||.|. |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGK-GYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCC-EESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccCc-hhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            4788999999999999999 9999999999999 9999999999 8

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=6.7e-12  Score=78.20  Aligned_cols=39  Identities=28%  Similarity=0.572  Sum_probs=21.1

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccC
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVE  268 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c  268 (331)
                      |++ |++++||.|. |++.|.+.+.|..|+++|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            344 5555555555 55555555555555555555555544

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=8.3e-12  Score=79.39  Aligned_cols=42  Identities=31%  Similarity=0.591  Sum_probs=30.4

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCcc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVD  270 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~  270 (331)
                      .|++ |++++||.|. |++.|.+...|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3666 7777777777 7777777777777777777777777753

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=6.5e-12  Score=79.98  Aligned_cols=41  Identities=32%  Similarity=0.609  Sum_probs=29.0

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEV  269 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~  269 (331)
                      .|++ |++++||.|. |++.|.+...|..|+++|++++||.|.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            3566 7777777777 777777777777777777777777764

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=5.2e-12  Score=78.64  Aligned_cols=40  Identities=30%  Similarity=0.433  Sum_probs=22.7

Q ss_pred             ccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceec
Q 020075          201 HFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKC  241 (331)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C  241 (331)
                      |++.|++++||.|++|++ .|..++.|..|++ |++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGK-AFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTC-CBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccc-hhCCHHHHHHHHHHhCCCCCCCC
Confidence            555555555555555555 5555555555555 555555554

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=6.1e-12  Score=80.06  Aligned_cols=41  Identities=32%  Similarity=0.524  Sum_probs=31.1

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCc
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEV  269 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~  269 (331)
                      .|++ |++++||.|. |++.|.+...|..|+++|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3667 7777777777 777777777777777777777777774

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=1.3e-11  Score=77.66  Aligned_cols=39  Identities=23%  Similarity=0.423  Sum_probs=26.1

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccC
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVE  268 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c  268 (331)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCC
Confidence            455 6666666666 66666666666666666666666666

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=8.1e-12  Score=79.50  Aligned_cols=40  Identities=25%  Similarity=0.498  Sum_probs=20.8

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEV  269 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~  269 (331)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|.
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            344 5555555555 555555555555555555555555553

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.3e-11  Score=78.58  Aligned_cols=43  Identities=26%  Similarity=0.354  Sum_probs=40.9

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      .|++.|+++++|.|++|++ .|..+..|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGK-AFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCC-EESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCc-hhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5888999999999999999 9999999999999 9999999998 5

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=1e-11  Score=79.03  Aligned_cols=40  Identities=20%  Similarity=0.258  Sum_probs=27.8

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcC-CCCccCc
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEG-HMPEVEV  269 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~-e~p~~c~  269 (331)
                      |++ |++++||.|. |++.|.+...|..|+++|++ ++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            566 6677777777 77777777777777777776 6777664

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=2.1e-11  Score=77.52  Aligned_cols=42  Identities=31%  Similarity=0.441  Sum_probs=40.2

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|++.|+++++|.|++|++ .|..+..|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGK-AFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCC-CCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCc-ccCCHHHHHHHHHHcCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999996

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.4e-11  Score=78.37  Aligned_cols=39  Identities=28%  Similarity=0.503  Sum_probs=23.7

Q ss_pred             ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          233 NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       233 H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      |++++||.|. |++.|.+...|..|+++|++++||.|..|
T Consensus         7 h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            7 GTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            5666666666 66666666666666666666666666543

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=2e-11  Score=77.69  Aligned_cols=42  Identities=29%  Similarity=0.427  Sum_probs=40.2

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|++.|++++||.|++|++ .|..+..|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGK-RFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCC-CBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             CcccCCCCCcCCCCCCCCc-ccCCHHHHHHHHHhcCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999996

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.7e-11  Score=76.20  Aligned_cols=40  Identities=30%  Similarity=0.654  Sum_probs=38.2

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccC
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVE  268 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c  268 (331)
                      .|++ |++++||.|. |++.|.+...|..|+++|++++||.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            3788 9999999999 99999999999999999999999987

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.16  E-value=1.8e-11  Score=76.15  Aligned_cols=41  Identities=29%  Similarity=0.436  Sum_probs=38.9

Q ss_pred             ccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          201 HFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      |++.|+++++|.|++|++ .|..++.|..|++ |++++||.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGK-AFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCC-EESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcCh-hhCCHHHHHHHHHhcCCCCCCCCC
Confidence            678899999999999999 9999999999999 9999999995

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.2e-11  Score=77.42  Aligned_cols=42  Identities=29%  Similarity=0.366  Sum_probs=40.1

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|++.|+++++|.|++|++ .|..+..|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGK-VFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCC-BCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCCcCCCCCcCeECCCCCc-ccCCHHHHHHHHHhhCCCCCCCCC
Confidence            5889999999999999999 9999999999999 9999999996

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.1e-11  Score=76.61  Aligned_cols=42  Identities=29%  Similarity=0.365  Sum_probs=40.0

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|++.|+++++|.|++|++ .|..+..|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGK-AFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCC-CCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCC-ccCCHHHHHHHhhhcCCCCCCCCC
Confidence            5889999999999999999 9999999999999 9999999995

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1e-11  Score=78.24  Aligned_cols=40  Identities=20%  Similarity=0.375  Sum_probs=28.1

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccC
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVE  268 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c  268 (331)
                      .|++ |++++||.|. |++.|.+...|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            3566 7777777777 77777777777777777777777766

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.9e-11  Score=77.80  Aligned_cols=42  Identities=26%  Similarity=0.387  Sum_probs=40.2

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|++.|+++++|.|++|++ .|..++.|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGK-AFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCC-EESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             CcccCcCCCCCeECCcCCc-ccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5889999999999999999 9999999999999 9999999996

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.6e-11  Score=78.05  Aligned_cols=42  Identities=29%  Similarity=0.401  Sum_probs=40.3

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|++.|+++++|.|.+|++ .|..+..|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSK-AFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCC-EESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCCCCcCeECCCCCc-ccCCHHHHHHHHHHhCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999996

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.9e-11  Score=76.95  Aligned_cols=39  Identities=26%  Similarity=0.446  Sum_probs=25.6

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccC
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVE  268 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c  268 (331)
                      |++ |++++||.|. |++.|.+.+.|..|+++|++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            555 6666666666 66666666666666666666666654

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.15  E-value=2e-11  Score=80.66  Aligned_cols=45  Identities=31%  Similarity=0.478  Sum_probs=36.9

Q ss_pred             cccCCCCccCCCCCCCccCChhHhHHHhh--ccCCCceecc-CCcccCC
Q 020075          204 RSHCPKMYSCDKCHKKSFSVVSDLRSHYK--NCGESRWKCS-CGTSFSR  249 (331)
Q Consensus       204 ~h~~~k~~~C~~C~k~~f~~~~~L~~H~~--H~~ekp~~C~-C~k~F~~  249 (331)
                      .|.+++||.|++|++ .|..+..|..|++  |++++||.|. |++.|.+
T Consensus         6 ~~~~~k~~~C~~C~k-~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGK-GFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCC-EESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCc-ccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            456678888888888 8888888888874  8888888888 8888875

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.5e-11  Score=77.19  Aligned_cols=42  Identities=33%  Similarity=0.464  Sum_probs=40.1

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|++.|+++++|.|.+|++ .|..+..|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGK-EFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCC-BCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CCccccCCCCCeECCCCCc-ccCCHHHHHHHHHHcCCCCCCCCC
Confidence            5888999999999999999 9999999999999 9999999996

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.5e-11  Score=77.11  Aligned_cols=42  Identities=31%  Similarity=0.405  Sum_probs=40.2

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|++.|+++++|.|++|++ .|..+..|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGK-SFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCC-CCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             ccccCCCCCCCcCCCCCCc-hhCCHHHHHHHHHHhCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999996

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.4e-11  Score=77.20  Aligned_cols=42  Identities=29%  Similarity=0.422  Sum_probs=40.1

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|++.|+++++|.|++|++ .|..+..|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGK-AFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTC-CCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             CcccccCCCCCeECCcCCh-hhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5889999999999999999 9999999999999 9999999996

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.4e-11  Score=77.24  Aligned_cols=42  Identities=29%  Similarity=0.377  Sum_probs=40.1

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|++.|+++++|.|++|++ .|..+..|..|++ |++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGK-VFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCC-CCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCCcCCCCCcCeECCCCCc-ccCChhHHHHHhHhcCCCCCCCCC
Confidence            5889999999999999999 9999999999999 9999999995

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.7e-11  Score=76.96  Aligned_cols=42  Identities=24%  Similarity=0.323  Sum_probs=40.1

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      .|++.|+++++|.|++|++ .|..+..|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGK-VFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCC-BCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCCCEECCccCc-ccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5889999999999999999 9999999999999 9999999996

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=2.1e-11  Score=76.71  Aligned_cols=42  Identities=26%  Similarity=0.450  Sum_probs=40.2

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|++.|+++++|.|++|++ .|..+..|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQA-TFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCC-EESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCC-ccCCHHHHHHHHHHcCCCCCcCCC
Confidence            6889999999999999999 9999999999999 9999999995

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.1e-11  Score=77.48  Aligned_cols=42  Identities=29%  Similarity=0.394  Sum_probs=40.1

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|++.|+++++|.|++|++ .|..+..|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGK-AFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCC-EESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             CccCCCCCCCCeeccccCC-hhcCHHHHHHHHHHcCCCCCCCCC
Confidence            5889999999999999999 9999999999999 9999999996

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.4e-11  Score=77.19  Aligned_cols=42  Identities=31%  Similarity=0.403  Sum_probs=40.1

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|+++|+++++|.|++|++ .|..+..|..|++ |++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGK-SFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCC-EESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCCCcCEECCCCCh-hhCChHHHHHHHHhcCCCCCcCCC
Confidence            5889999999999999999 9999999999999 9999999995

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3e-11  Score=75.09  Aligned_cols=41  Identities=29%  Similarity=0.344  Sum_probs=38.8

Q ss_pred             ccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          201 HFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      |+++|++++||.|++|++ .|..++.|..|++ |++++||.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKE-TFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCC-BCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCC-ccCCHHHHHHHHHHhCCCCCCCCC
Confidence            678899999999999999 9999999999999 9999999984

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.5e-11  Score=76.30  Aligned_cols=42  Identities=29%  Similarity=0.479  Sum_probs=40.1

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|++.|+++++|.|++|++ .|..+..|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQK-AFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCC-EESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCc-ccCCHhHHHHHHHHhCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999995

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.13  E-value=2e-11  Score=77.60  Aligned_cols=42  Identities=31%  Similarity=0.462  Sum_probs=40.1

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      .|++.|++++||.|++|++ .|..+..|..|++ |++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGK-SFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSC-EESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCCCEECCCCCc-ccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5889999999999999999 9999999999999 9999999996

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2e-11  Score=77.62  Aligned_cols=42  Identities=29%  Similarity=0.400  Sum_probs=40.3

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|++.|++++||.|++|++ .|..+..|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGK-AFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCC-EESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CcccccCCCCCEECcccCC-ccCCHhHHHHHHHHcCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999996

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=2.3e-11  Score=77.39  Aligned_cols=42  Identities=26%  Similarity=0.369  Sum_probs=40.1

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      .|++.|++++||.|.+|++ .|..+..|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGK-AFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCC-EESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CCccccCCCcCcCCCCCCC-ccCCHHHHHHHHHhcCCCCCCCCC
Confidence            5889999999999999999 9999999999999 9999999996

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=2.2e-11  Score=83.93  Aligned_cols=29  Identities=24%  Similarity=0.469  Sum_probs=22.1

Q ss_pred             CCccCC-CCCCCccCChhHhHHHhh-ccCCCc
Q 020075          209 KMYSCD-KCHKKSFSVVSDLRSHYK-NCGESR  238 (331)
Q Consensus       209 k~~~C~-~C~k~~f~~~~~L~~H~~-H~~ekp  238 (331)
                      +||.|+ .|++ .|..++.|..|++ |...+|
T Consensus        35 ~p~~C~~~C~k-~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A           35 LPVACPNQCGV-GTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             SEEECTTCCSC-CEEETTTHHHHHHTTSSSCC
T ss_pred             cCccCCcccCc-ccccHHHHHHHHHhhcccCc
Confidence            677777 7887 7888888888888 766554

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=3.2e-11  Score=76.66  Aligned_cols=42  Identities=26%  Similarity=0.443  Sum_probs=40.0

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      .|+++|+++++|.|++|++ .|..+..|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRK-TFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCC-CCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCCcCCCCCcCCCCcCc-hhCCHHHHHHHHHHhCCCCCCCCC
Confidence            4888999999999999999 9999999999999 9999999996

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.8e-11  Score=76.94  Aligned_cols=42  Identities=26%  Similarity=0.372  Sum_probs=40.1

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      .|++.|+++++|.|++|++ .|..+..|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGK-AFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCC-EESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCCcccCCCCCCCCCCCCc-ccCCHHHHHHHHhHhCCCCCCCCC
Confidence            5889999999999999999 9999999999999 9999999996

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.7e-11  Score=76.94  Aligned_cols=42  Identities=26%  Similarity=0.418  Sum_probs=40.2

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|++.|+++++|.|++|++ .|..+..|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGK-AFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCC-EESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CCccCCCCCCCeECCCCCC-ccCCHHHHHHHHHHcCCCCCCCCC
Confidence            5889999999999999999 9999999999999 9999999996

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.5e-11  Score=77.06  Aligned_cols=42  Identities=26%  Similarity=0.416  Sum_probs=40.1

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|++.|+++++|.|++|++ .|..+..|..|++ |++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQK-AFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCC-EESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCc-ccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5889999999999999999 9999999999999 9999999995

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=2.4e-11  Score=76.44  Aligned_cols=42  Identities=17%  Similarity=0.279  Sum_probs=40.1

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|+++|++++||.|++|++ .|..+..|..|++ |++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDR-VFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSC-EESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCc-hhCCHHHHHHHhHhcCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999995

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=3.1e-11  Score=76.72  Aligned_cols=42  Identities=26%  Similarity=0.466  Sum_probs=40.1

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|+++|+++++|.|++|++ .|..+..|..|++ |++++||.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k-~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKK-TFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCC-BCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCCCCEECCccCc-ccCCHHHHHHHHHHcCCCCCCCCC
Confidence            5888999999999999999 9999999999999 9999999996

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=3.9e-11  Score=76.54  Aligned_cols=43  Identities=26%  Similarity=0.354  Sum_probs=40.9

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh--ccCCCceecc-C
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK--NCGESRWKCS-C  243 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~--H~~ekp~~C~-C  243 (331)
                      .|++.|++++||.|++|++ .|..++.|..|++  |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGK-AFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCC-CBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCc-hhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            5889999999999999999 9999999999997  9999999998 8

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.9e-11  Score=77.79  Aligned_cols=38  Identities=32%  Similarity=0.510  Sum_probs=20.8

Q ss_pred             ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCcc
Q 020075          233 NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVD  270 (331)
Q Consensus       233 H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~  270 (331)
                      |++++||.|. |++.|.+...|..|+++|++++||.|..
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytt_A            7 GEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSS   45 (46)
T ss_dssp             CSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCC
T ss_pred             CCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5555555555 5555555555555555555555555544

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.3e-11  Score=76.46  Aligned_cols=42  Identities=29%  Similarity=0.368  Sum_probs=40.0

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      .|+++|++++||.|++|++ .|..+..|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGK-VFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTE-ECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCC-ccCCHHHHHHHHHHcCCCCCCCCC
Confidence            5889999999999999999 9999999999999 9999999995

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.6e-11  Score=76.70  Aligned_cols=39  Identities=26%  Similarity=0.549  Sum_probs=31.5

Q ss_pred             hh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCc
Q 020075          231 YK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEV  269 (331)
Q Consensus       231 ~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~  269 (331)
                      .+ |++++||.|. |++.|.+...|..|+++|++++||.|.
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            4 GSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            45 7888888888 888888888888888888888888875

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=3.7e-11  Score=76.40  Aligned_cols=42  Identities=31%  Similarity=0.396  Sum_probs=39.7

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      .|++.|++++||.|++|++ .|..+..|..|++ |++++||.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGK-AFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCC-BCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCCCCcccCCCCCCc-ccCcHHHHHHHHHhcCCCCCCCCC
Confidence            4788999999999999999 9999999999999 9999999996

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=3.9e-11  Score=76.32  Aligned_cols=39  Identities=26%  Similarity=0.506  Sum_probs=30.8

Q ss_pred             hh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCc
Q 020075          231 YK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEV  269 (331)
Q Consensus       231 ~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~  269 (331)
                      ++ |++++||.|. |++.|.+...|..|+++|++++||.|.
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            45 7778888888 888888888888888888888888775

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=3.4e-11  Score=74.90  Aligned_cols=40  Identities=25%  Similarity=0.428  Sum_probs=38.4

Q ss_pred             ccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceec
Q 020075          201 HFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKC  241 (331)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C  241 (331)
                      |++.|++++||.|++|++ .|..++.|..|++ |++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGT-RFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCC-CBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCC-ccCCHHHHHHHHHhcCCCCCCCC
Confidence            778899999999999999 9999999999999 999999998

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2e-11  Score=77.66  Aligned_cols=42  Identities=26%  Similarity=0.390  Sum_probs=40.2

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|++.|++++||.|++|++ .|..+..|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGK-AFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTE-EESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             CccccCCCCCCeECcccCh-hhCCHHHHHHHHHHhCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999996

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=5.3e-11  Score=74.54  Aligned_cols=37  Identities=19%  Similarity=0.362  Sum_probs=31.3

Q ss_pred             ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCc
Q 020075          233 NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEV  269 (331)
Q Consensus       233 H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~  269 (331)
                      |++++||.|. |++.|.+...|..|+++|++++||.|.
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            5 SSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             cCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            7888888888 888888888888888888888888875

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=3.8e-11  Score=76.29  Aligned_cols=42  Identities=36%  Similarity=0.445  Sum_probs=39.6

Q ss_pred             ccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          201 HFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      +++.|+++++|.|++|++ .|..+..|..|++ |++++||.|. |
T Consensus         3 ~~~~h~~~~~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHK-SFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCC-EESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCc-ccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            467888999999999999 9999999999999 9999999998 7

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=4.8e-11  Score=75.84  Aligned_cols=42  Identities=31%  Similarity=0.445  Sum_probs=39.7

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      .|++.|+++++|.|++|++ .|..+..|..|++ |++++||.|.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k-~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRK-AFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCC-BCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCc-hhCCHHHHHHHHHHhCCCCCCCCC
Confidence            4788999999999999999 9999999999999 9999999996

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=3e-11  Score=76.72  Aligned_cols=42  Identities=29%  Similarity=0.423  Sum_probs=40.1

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      .|++.|+++++|.|.+|++ .|..+..|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGK-AFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCC-EESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCCcCcCCCcCccCCCCCC-CcCCHHHHHHHHHhcCCCCCCCCC
Confidence            5889999999999999999 9999999999999 9999999996

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=3.2e-11  Score=76.60  Aligned_cols=42  Identities=31%  Similarity=0.448  Sum_probs=40.2

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|++.|+++++|.|++|++ .|..+..|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGK-AFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTE-ECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CcccCCCCCCCeECCCCCh-hhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5889999999999999999 9999999999999 9999999996

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=3e-11  Score=75.11  Aligned_cols=41  Identities=27%  Similarity=0.413  Sum_probs=38.9

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceec
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKC  241 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C  241 (331)
                      .|+++|++++||.|++|++ .|..+..|..|++ |++++||.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            1 GSSGSSGGEKPYKCETCGA-RFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCCSSCSEECTTTCC-EESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCCcccCCCCCEeCCCcCh-hhCCHHHHHHHHHHcCCCCCCCC
Confidence            3788899999999999999 9999999999999 999999998

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.10  E-value=5.8e-11  Score=75.07  Aligned_cols=39  Identities=31%  Similarity=0.646  Sum_probs=27.3

Q ss_pred             ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          233 NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       233 H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      |++++||.|. |++.|.++..|..|+++|++++||.|+.|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~c   44 (45)
T 2epq_A            5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSS   44 (45)
T ss_dssp             CSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCC
T ss_pred             cCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCC
Confidence            6666777777 77777777777777777777777776655

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=3.4e-11  Score=76.56  Aligned_cols=42  Identities=21%  Similarity=0.352  Sum_probs=40.2

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|+++|+++++|.|++|++ .|..+..|..|++ |++++||.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGK-GFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCC-CCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCcCCCCCCCeECCCCCc-ccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5889999999999999999 9999999999999 9999999996

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.09  E-value=4.5e-11  Score=74.25  Aligned_cols=40  Identities=23%  Similarity=0.277  Sum_probs=38.3

Q ss_pred             ccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceec
Q 020075          201 HFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKC  241 (331)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C  241 (331)
                      |++.|++++||.|++|++ .|..++.|..|++ |++++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k-~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGK-SFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCC-EESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCc-ccCCHHHHHHHhhhcCCCCCCCC
Confidence            678899999999999999 9999999999999 999999998

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.4e-11  Score=77.21  Aligned_cols=42  Identities=19%  Similarity=0.233  Sum_probs=40.2

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|+++|++++||.|.+|++ .|..+..|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGM-NFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCC-EESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccCh-hhCCHHHHHHHHHHhCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999996

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=4.7e-11  Score=75.90  Aligned_cols=42  Identities=29%  Similarity=0.320  Sum_probs=39.3

Q ss_pred             ccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          201 HFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      .++.|+++++|.|++|++ .|..+..|..|++ |++++||.|. |
T Consensus         3 ~~~~h~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGK-SFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCC-CCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCCeeCCCCCc-ccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            357788899999999999 9999999999999 9999999998 8

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=7.2e-11  Score=74.24  Aligned_cols=42  Identities=24%  Similarity=0.273  Sum_probs=39.5

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      .|++.|+++++|.|++|++ .|..+..|..|++ |++++||.|.
T Consensus         2 ~h~~~h~~~~~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            2 SSGSSGAAKTTSECQECGK-IFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CCSCSCSSSCCCCCTTTCC-CCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCCcCeECCCCCc-ccCCHHHHHHHHHHHCCCCCCCCC
Confidence            4788899999999999999 9999999999999 9999999995

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.5e-11  Score=76.36  Aligned_cols=42  Identities=24%  Similarity=0.386  Sum_probs=40.0

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +|+++|++++||.|++|++ .|.....|..|++ |++++||.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGK-AFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTE-EESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCc-ccCCHHHHHHHHHHhCCCCCCCCC
Confidence            6889999999999999999 9999999999999 9999999984

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=6.7e-11  Score=73.14  Aligned_cols=36  Identities=31%  Similarity=0.636  Sum_probs=24.7

Q ss_pred             ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccC
Q 020075          233 NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVE  268 (331)
Q Consensus       233 H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c  268 (331)
                      |++++||.|. |++.|.+...|..|+++|++++||.|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             cCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            6666667776 77777777777777666666666665

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.06  E-value=6.3e-11  Score=76.08  Aligned_cols=40  Identities=25%  Similarity=0.434  Sum_probs=26.0

Q ss_pred             ccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCc
Q 020075          205 SHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGT  245 (331)
Q Consensus       205 h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k  245 (331)
                      |..+++|.|.+|++ .|.....|..|++ |++++||.|. |+|
T Consensus         7 ~~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGK-IFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTE-EESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCc-ccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            44456666666666 6666666666666 6666666666 664

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=2.8e-11  Score=85.85  Aligned_cols=64  Identities=19%  Similarity=0.378  Sum_probs=58.6

Q ss_pred             HhcccccccCCCCccCCCCCCCccCChhHhHHHhhccCCCceecc-CCcccCCHHHHHHHHHhhcCCC
Q 020075          198 VKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYKNCGESRWKCS-CGTSFSRKDKLFGHVALFEGHM  264 (331)
Q Consensus       198 l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~  264 (331)
                      |..|++.|.+++||.|..|++ .| ....|..|+.|.+++||.|. |++.|. ...|..|+++|.+++
T Consensus         5 L~~H~~~~c~~r~~~C~~C~~-~~-~~~~L~~H~~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A            5 SSGHEETECPLRLAVCQHCDL-EL-SILKLKEHEDYCGARTELCGNCGRNVL-VKDLKTHPEVCGREG   69 (75)
T ss_dssp             CSCCCCCCCCCCCEECSSSCC-EE-CHHHHHHHHHHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTBS
T ss_pred             HHhhCcccCCCcccCCcccCh-Hh-hHHHHHHHHhHcCCCceEcccCCCcCc-HHHHHHHHHHccCCc
Confidence            678999999999999999999 89 59999999889999999999 999988 499999999998764

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=6.3e-11  Score=75.29  Aligned_cols=42  Identities=24%  Similarity=0.363  Sum_probs=39.8

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccC-CCceecc
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCG-ESRWKCS  242 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~-ekp~~C~  242 (331)
                      .|++.|++++||.|++|++ .|..+..|..|++ |++ ++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEK-TFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCC-EESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CCccccCCCCCEECcCCCC-cCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5888999999999999999 9999999999999 999 9999995

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.06  E-value=6.6e-11  Score=74.80  Aligned_cols=41  Identities=24%  Similarity=0.349  Sum_probs=38.6

Q ss_pred             ccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CC
Q 020075          203 KRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CG  244 (331)
Q Consensus       203 ~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~  244 (331)
                      ..|++++||.|++|++ .|..+..|..|++ |+++++|.|+ ||
T Consensus         3 ~~h~~~k~~~C~~C~k-~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGL-RFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTE-ECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCc-ccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            4677889999999999 9999999999999 9999999999 97

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=9.3e-11  Score=73.74  Aligned_cols=41  Identities=27%  Similarity=0.324  Sum_probs=39.3

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceec
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKC  241 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C  241 (331)
                      .|++.|++++||.|.+|++ .|...+.|..|++ |++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGK-AFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCC-EESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCCcccCCCcCeECCCCCc-ccCchHHHHHHHhHhcCCCCCCC
Confidence            5889999999999999999 9999999999999 999999987

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.02  E-value=1.4e-10  Score=74.37  Aligned_cols=40  Identities=20%  Similarity=0.283  Sum_probs=38.6

Q ss_pred             ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCcccc
Q 020075          233 NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDEK  272 (331)
Q Consensus       233 H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~~  272 (331)
                      |.+++||.|. |++.|.+...|..|+++|++++||.|..|.
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~   47 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS   47 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCC
Confidence            7889999999 999999999999999999999999999886

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.01  E-value=2.8e-10  Score=75.03  Aligned_cols=45  Identities=24%  Similarity=0.394  Sum_probs=42.1

Q ss_pred             ccCCCceecc-CCcccCCHHHHHHHHH-hhcCCCCccCccccccCCc
Q 020075          233 NCGESRWKCS-CGTSFSRKDKLFGHVA-LFEGHMPEVEVDEKMKHHD  277 (331)
Q Consensus       233 H~~ekp~~C~-C~k~F~~~~~L~~H~~-~H~~e~p~~c~~~~~~~~~  277 (331)
                      |++++||.|. |++.|.+...|.+|++ +|++++||.|..|...+..
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            7899999999 9999999999999997 8999999999999987754

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.9e-10  Score=73.60  Aligned_cols=42  Identities=21%  Similarity=0.269  Sum_probs=29.1

Q ss_pred             ccccccCCCCccCC--CCCCCccCChhHhHHHhh-ccCCCceecc-C
Q 020075          201 HFKRSHCPKMYSCD--KCHKKSFSVVSDLRSHYK-NCGESRWKCS-C  243 (331)
Q Consensus       201 H~~~h~~~k~~~C~--~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C  243 (331)
                      |.+.|+++++|.|.  .|++ .|..+..|..|++ |++++||.|. |
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGW-RFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCC-EESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCC-ccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44566666777776  6777 7777777777777 7777777776 5

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.01  E-value=2.2e-10  Score=69.92  Aligned_cols=36  Identities=19%  Similarity=0.432  Sum_probs=31.1

Q ss_pred             ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccC
Q 020075          233 NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVE  268 (331)
Q Consensus       233 H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c  268 (331)
                      |++++||.|. |++.|.+.+.|..|+++|++++||.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            6788899999 99999999999999999999998875

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.01  E-value=2.6e-10  Score=79.71  Aligned_cols=31  Identities=32%  Similarity=0.678  Sum_probs=27.4

Q ss_pred             cCCCcccccc--chhhccCHHHHHHHHHHhcCC
Q 020075          121 LAEHIHFCDI--CGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       121 ~~~~~~~C~~--C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      ...++|.|.+  |++.|.....|..|+++|+++
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   45 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGE   45 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHHHHHSSS
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHHHhcCCC
Confidence            4578899988  999999999999999999887

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.01  E-value=6e-11  Score=78.25  Aligned_cols=50  Identities=16%  Similarity=0.144  Sum_probs=46.5

Q ss_pred             cccccHHHHhcccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCcee
Q 020075          190 RALKSVICVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWK  240 (331)
Q Consensus       190 k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~  240 (331)
                      |.|.....|..|++.|+++++|.|.+|++ .|...+.|..|++ |++++||.
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCPICYA-VIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECTTTCC-EESSHHHHHHHHHHHTTTSCCC
T ss_pred             cccCCCcchhhHHHhcCCCCCccCCCCCc-ccCCHHHHHHHHHHhccCCCCC
Confidence            67777778899999999999999999999 9999999999999 99999984

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=1.9e-10  Score=73.04  Aligned_cols=41  Identities=24%  Similarity=0.307  Sum_probs=38.3

Q ss_pred             ccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          201 HFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +++.|+++++|.|++|++ .|..+..|..|++ |++++||.|.
T Consensus         3 ~~~~h~~~k~~~C~~C~k-~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGK-FFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCC-CCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCCCcCCCCCCC-eeCChHHHHHHHHHhCCCCCCCCC
Confidence            467888999999999999 9999999999999 9999999996

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.5e-10  Score=73.02  Aligned_cols=42  Identities=31%  Similarity=0.494  Sum_probs=39.1

Q ss_pred             Hhh-ccCCCceec--c-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          230 HYK-NCGESRWKC--S-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       230 H~~-H~~ekp~~C--~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      |.+ |++++||.|  + |++.|.++..|..|+++|++++||.|..|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            567 999999999  4 99999999999999999999999999875

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.9e-10  Score=72.62  Aligned_cols=41  Identities=27%  Similarity=0.431  Sum_probs=38.2

Q ss_pred             ccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          201 HFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +.+.|+++++|.|.+|++ .|..+..|..|++ |++++||.|.
T Consensus         3 ~~~~h~~~k~~~C~~C~k-~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGK-SFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCCCSCCSEEETTTTE-EESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCCCcCccCCCCCC-ccCChHHHHHHHHHhCCCCCCCCC
Confidence            467888899999999999 9999999999999 9999999995

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=2.8e-10  Score=70.23  Aligned_cols=38  Identities=26%  Similarity=0.477  Sum_probs=35.9

Q ss_pred             ccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceec
Q 020075          203 KRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKC  241 (331)
Q Consensus       203 ~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C  241 (331)
                      +.|+++++|.|++|++ .|..+..|..|++ |++++||.|
T Consensus         3 ~~h~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGK-SFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCC-EESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCC-CcCCHHHHHHHHHHhCCCCCcCC
Confidence            5678889999999999 9999999999999 999999998

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.97  E-value=3.9e-10  Score=76.97  Aligned_cols=39  Identities=18%  Similarity=0.448  Sum_probs=34.0

Q ss_pred             ccCCCceec--c-CCcccCCHHHHHHHH-HhhcCCCCccCccc
Q 020075          233 NCGESRWKC--S-CGTSFSRKDKLFGHV-ALFEGHMPEVEVDE  271 (331)
Q Consensus       233 H~~ekp~~C--~-C~k~F~~~~~L~~H~-~~H~~e~p~~c~~~  271 (331)
                      ++|+|||+|  + |+|+|.+.++|.+|+ ++|++++||.|.+.
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~~   64 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAEV   64 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCSC
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccccc
Confidence            689999999  5 999999999999997 68999999988653

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.97  E-value=8.3e-11  Score=80.03  Aligned_cols=52  Identities=8%  Similarity=0.135  Sum_probs=46.0

Q ss_pred             hHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccccccCCccccc
Q 020075          227 LRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDEKMKHHDQDVV  281 (331)
Q Consensus       227 L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~~~~~~~~~~~  281 (331)
                      |..|++ |++++||.|. |++.|.....|.   ++|++++||.|..|...+.....+
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTC
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCccc
Confidence            567999 9999999999 999999999886   899999999999999887665433

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.96  E-value=3.7e-10  Score=70.59  Aligned_cols=39  Identities=21%  Similarity=0.325  Sum_probs=36.5

Q ss_pred             ccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          203 KRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       203 ~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      +.|+++++|.|..|++ .|..+..|..|++ |++++||.|.
T Consensus         3 ~~h~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDC-RFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             SCCSSSCCBCCSSSCC-CBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             cCcCCCCCEECCCCCC-eeCChHHHHHHHHhhCCCCCccCC
Confidence            5678889999999999 9999999999999 9999999995

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=4e-10  Score=67.77  Aligned_cols=33  Identities=18%  Similarity=0.424  Sum_probs=29.5

Q ss_pred             ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCC
Q 020075          233 NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMP  265 (331)
Q Consensus       233 H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p  265 (331)
                      |++++||.|. |++.|.+...|..|+++|++++|
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            4 GSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            8889999999 99999999999999999988875

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.96  E-value=9.8e-12  Score=91.01  Aligned_cols=56  Identities=16%  Similarity=0.321  Sum_probs=33.9

Q ss_pred             cccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcC
Q 020075          202 FKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEG  262 (331)
Q Consensus       202 ~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~  262 (331)
                      .++|++++||.|++|++ .|..+..|..|++ |++++||.|. |.+    ...|..|+++|.+
T Consensus        17 ~~~H~~~kpy~C~~C~k-~F~~~~~L~~H~~~Ht~ekp~~C~~~~~----~~~~~~~~~~~~~   74 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDS-KLQSTAELTSHLNIHNEEFQKRAKRQER----RKQLLSKQKYADG   74 (88)
T ss_dssp             CCSCCCCSCEECSSSCC-EESSHHHHHHHHHHHHHHHHHHCCCCSC----CCCCCCCCCCCCC
T ss_pred             ccccCCCCCCcCCCCCC-EeCCHHHHHHHHHHhCCCCCcccchhhh----HHHHHhhhccccc
Confidence            34566666666666666 6666666666666 6666666666 543    3344455555554

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.90  E-value=6.1e-10  Score=66.94  Aligned_cols=34  Identities=29%  Similarity=0.434  Sum_probs=24.3

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCC
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGH  263 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e  263 (331)
                      |++ |++++||.|. |++.|.+...|..|+++|+++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            566 7777777777 777777777777777777653

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.90  E-value=1.1e-09  Score=64.76  Aligned_cols=33  Identities=24%  Similarity=0.490  Sum_probs=27.9

Q ss_pred             ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCC
Q 020075          233 NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMP  265 (331)
Q Consensus       233 H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p  265 (331)
                      |++++||.|. |++.|.+.+.|..|+++|++++|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            6788888888 88888888888888888888765

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.87  E-value=1.4e-09  Score=64.48  Aligned_cols=33  Identities=18%  Similarity=0.504  Sum_probs=26.8

Q ss_pred             ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCC
Q 020075          233 NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMP  265 (331)
Q Consensus       233 H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p  265 (331)
                      |++++||.|. |++.|.+...|.+|+++|++++|
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            6778888888 88888888888888888887765

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.78  E-value=4.3e-09  Score=61.60  Aligned_cols=31  Identities=32%  Similarity=0.538  Sum_probs=24.3

Q ss_pred             Cceecc-CCcccCCHHHHHHHHHhhcCCCCcc
Q 020075          237 SRWKCS-CGTSFSRKDKLFGHVALFEGHMPEV  267 (331)
Q Consensus       237 kp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~  267 (331)
                      +||.|. |++.|.+.+.|..|+++|++++||.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            577888 8888888888888888888887764

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.77  E-value=2.8e-09  Score=77.81  Aligned_cols=47  Identities=11%  Similarity=0.314  Sum_probs=41.9

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCccccccC
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDEKMKH  275 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~~~~~  275 (331)
                      .|.+ |++++||.|. |++.|.+...|..|+++|++++||.|..+....
T Consensus        15 ~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~~~   63 (88)
T 1x6f_A           15 LGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQERRK   63 (88)
T ss_dssp             CCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSCCC
T ss_pred             ccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhhHH
Confidence            4456 9999999999 999999999999999999999999998776543

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.76  E-value=3.3e-09  Score=64.52  Aligned_cols=36  Identities=19%  Similarity=0.449  Sum_probs=32.9

Q ss_pred             ccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceec
Q 020075          205 SHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKC  241 (331)
Q Consensus       205 h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C  241 (331)
                      |++++||.|.+|++ .|..++.|..|++ |++++||.+
T Consensus         1 h~~~k~~~C~~C~k-~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKR-EFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCC-EESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCc-ccCCHHHHHHHHHHcCCCcccee
Confidence            46779999999999 9999999999999 999999976

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=6.5e-09  Score=61.80  Aligned_cols=32  Identities=22%  Similarity=0.390  Sum_probs=27.4

Q ss_pred             ccCCCceecc-CCcccCCHHHHHHHHHhhcCCC
Q 020075          233 NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHM  264 (331)
Q Consensus       233 H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~  264 (331)
                      |++++||.|. |++.|.....|..|+++|++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            7788888888 9888988888888888888764

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.74  E-value=7e-09  Score=62.57  Aligned_cols=34  Identities=24%  Similarity=0.446  Sum_probs=24.7

Q ss_pred             ccCCCceecc---CCcccCCHHHHHHHHHhhcCCCCc
Q 020075          233 NCGESRWKCS---CGTSFSRKDKLFGHVALFEGHMPE  266 (331)
Q Consensus       233 H~~ekp~~C~---C~k~F~~~~~L~~H~~~H~~e~p~  266 (331)
                      |++++||.|.   |++.|.+.+.|.+|+++|++++||
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            5667777776   777777777777777777777765

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=5.9e-09  Score=62.65  Aligned_cols=31  Identities=23%  Similarity=0.285  Sum_probs=26.6

Q ss_pred             ccCCCceecc-CCcccCCHHHHHHH-HHhhcCC
Q 020075          233 NCGESRWKCS-CGTSFSRKDKLFGH-VALFEGH  263 (331)
Q Consensus       233 H~~ekp~~C~-C~k~F~~~~~L~~H-~~~H~~e  263 (331)
                      |++++||.|. |++.|.+++.|..| +++|+++
T Consensus         4 H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            4 GSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             SSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             cCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            8888888898 99999888888888 8888764

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=8.4e-09  Score=61.40  Aligned_cols=32  Identities=22%  Similarity=0.375  Sum_probs=26.9

Q ss_pred             ccCCCceecc-CCcccCCHHHHHHHHHhhcCCC
Q 020075          233 NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHM  264 (331)
Q Consensus       233 H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~  264 (331)
                      |++++||.|. |++.|.+...|..|+++|++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            7788888888 8888888888888888888764

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=9.5e-09  Score=62.31  Aligned_cols=31  Identities=26%  Similarity=0.360  Sum_probs=24.1

Q ss_pred             ccCCCceecc---CCcccCCHHHHHHHHHhhcCC
Q 020075          233 NCGESRWKCS---CGTSFSRKDKLFGHVALFEGH  263 (331)
Q Consensus       233 H~~ekp~~C~---C~k~F~~~~~L~~H~~~H~~e  263 (331)
                      ++++|||+|.   |+|+|.+++.|.+|+++|+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            5677888883   888888888888888888765

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=6.4e-09  Score=61.92  Aligned_cols=32  Identities=13%  Similarity=0.280  Sum_probs=25.2

Q ss_pred             ccCCCceecc-CCcccCCHHHHHHHHHhhcCCC
Q 020075          233 NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHM  264 (331)
Q Consensus       233 H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~  264 (331)
                      |++++||.|. |++.|.+.+.|..|+++|++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            6777888888 8888888888888888887654

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=6.2e-09  Score=62.40  Aligned_cols=32  Identities=25%  Similarity=0.443  Sum_probs=27.0

Q ss_pred             ccCCCceecc-CCcccCCH-HHHHHHHHhhcCCC
Q 020075          233 NCGESRWKCS-CGTSFSRK-DKLFGHVALFEGHM  264 (331)
Q Consensus       233 H~~ekp~~C~-C~k~F~~~-~~L~~H~~~H~~e~  264 (331)
                      |++++||.|. |++.|.+. +.|..|+++|++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            4 GSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            7888888888 88888888 88888888888764

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=1.1e-08  Score=60.86  Aligned_cols=32  Identities=25%  Similarity=0.450  Sum_probs=25.9

Q ss_pred             ccCCCceecc-CCcccCCHHHHHHHHHhhcCCC
Q 020075          233 NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHM  264 (331)
Q Consensus       233 H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~  264 (331)
                      |++++||.|. |++.|.+...|..|+++|++++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            6778888888 8888888888888888887764

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.70  E-value=9.4e-09  Score=70.14  Aligned_cols=38  Identities=21%  Similarity=0.385  Sum_probs=34.3

Q ss_pred             cccCCCCccCCC--CCCCccCChhHhHHHh-h-ccCCCceecc
Q 020075          204 RSHCPKMYSCDK--CHKKSFSVVSDLRSHY-K-NCGESRWKCS  242 (331)
Q Consensus       204 ~h~~~k~~~C~~--C~k~~f~~~~~L~~H~-~-H~~ekp~~C~  242 (331)
                      ..+++|||+|..  |+| +|..+++|..|+ + |+++|||.|.
T Consensus        21 ~~sGEKPYkC~~~~CgK-aFsr~s~L~~H~rriHTgEKP~~~~   62 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFA-AFTIQQNLILHYQAVHKSDLPAFSA   62 (73)
T ss_dssp             SSCSSCSCBCCSTTCCC-BCSSHHHHHHHHHHHSSSCCCCCCC
T ss_pred             cccCCCCeECCCCCcCh-hHcCHHHHHHHhhhhCCCCCCcccc
Confidence            567789999975  999 999999999997 6 9999999994

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.70  E-value=1.2e-08  Score=61.09  Aligned_cols=36  Identities=28%  Similarity=0.381  Sum_probs=33.3

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCC
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGE  236 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~e  236 (331)
                      .|++.|++++||.|+.|++ .|..+..|..|++ |+++
T Consensus         1 ~H~~~h~~~k~~~C~~C~k-~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            1 GSTRGSTGIKPFQCPDCDR-SFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CCSSTTCCSSSBCCTTTCC-CBSSHHHHHHHHGGGTCC
T ss_pred             CCCCcCCCCCCccCCCCCc-ccCcHHHHHHHHHHhccC
Confidence            3788999999999999999 9999999999999 9875

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=2.1e-09  Score=76.04  Aligned_cols=38  Identities=11%  Similarity=0.052  Sum_probs=32.8

Q ss_pred             hhhhhhhhhcCCCccccccchhhccCHHHHHHHHHHhcCC
Q 020075          112 IVEIDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       112 ~l~~h~~~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      .|..|++.|.+++|+.|..|++.|. ...|..|+ .|.++
T Consensus         4 ~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~   41 (75)
T 2d9k_A            4 GSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGA   41 (75)
T ss_dssp             CCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHH
T ss_pred             HHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCC
Confidence            4678888899999999999999994 88899998 78776

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=1.5e-08  Score=60.33  Aligned_cols=32  Identities=19%  Similarity=0.448  Sum_probs=27.0

Q ss_pred             ccCCCceecc-CCcccCCHHHHHHHHHhhcCCC
Q 020075          233 NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHM  264 (331)
Q Consensus       233 H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~  264 (331)
                      |++++||.|. |++.|.....|..|+++|++++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            6778888888 8888888888888888888764

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=7.2e-09  Score=62.07  Aligned_cols=36  Identities=36%  Similarity=0.471  Sum_probs=33.1

Q ss_pred             cccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCc
Q 020075          202 FKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESR  238 (331)
Q Consensus       202 ~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp  238 (331)
                      ++.|++++||.|.+|++ .|..+..|..|++ |++++|
T Consensus         1 ~~~h~~~k~~~C~~C~k-~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            1 GSSGSSGRSYSCPVCEK-SFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCCEETTTTE-ECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCCcCCCCCCC-ccCCHHHHHHHHHHHcCCCC
Confidence            35788899999999999 9999999999999 999886

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.66  E-value=4.7e-09  Score=66.85  Aligned_cols=37  Identities=16%  Similarity=0.448  Sum_probs=29.5

Q ss_pred             HHHhh-ccCCCceec--c-CCcccCCHHHHHHHHHhhcCCC
Q 020075          228 RSHYK-NCGESRWKC--S-CGTSFSRKDKLFGHVALFEGHM  264 (331)
Q Consensus       228 ~~H~~-H~~ekp~~C--~-C~k~F~~~~~L~~H~~~H~~e~  264 (331)
                      ..|.. |++++||.|  . |++.|.+++.|..|+++|++++
T Consensus         7 ~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            7 IDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            34445 888888888  6 8888888888888888888764

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.64  E-value=1.4e-08  Score=64.90  Aligned_cols=34  Identities=18%  Similarity=0.352  Sum_probs=28.5

Q ss_pred             ccCCCceecc-CCcccCCHHHHHHHHH-hhcCCCCc
Q 020075          233 NCGESRWKCS-CGTSFSRKDKLFGHVA-LFEGHMPE  266 (331)
Q Consensus       233 H~~ekp~~C~-C~k~F~~~~~L~~H~~-~H~~e~p~  266 (331)
                      |++++||.|. |+|.|.+...|..|++ +|+++.+-
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~~   37 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEG   37 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC----
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCCC
Confidence            7899999999 9999999999999999 99887643

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=1.4e-08  Score=61.51  Aligned_cols=33  Identities=15%  Similarity=0.241  Sum_probs=30.1

Q ss_pred             hhcCCCcccccc--chhhccCHHHHHHHHHHhcCC
Q 020075          119 ELLAEHIHFCDI--CGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       119 ~h~~~~~~~C~~--C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      .+.+++||+|++  |++.|..++.|..|+++|+++
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            357899999986  999999999999999999985

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.62  E-value=2.1e-08  Score=59.04  Aligned_cols=34  Identities=32%  Similarity=0.504  Sum_probs=31.2

Q ss_pred             cccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCc
Q 020075          204 RSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESR  238 (331)
Q Consensus       204 ~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp  238 (331)
                      +|+++++|.|.+|++ .|..++.|..|++ |++++|
T Consensus         1 ~h~~~k~~~C~~C~k-~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            1 GSSGSSGYVCALCLK-KFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCCSEECSSSCC-EESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCCeECCCCcc-hhCCHHHHHHHHHHHcCCCC
Confidence            367789999999999 9999999999999 999886

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.61  E-value=1.4e-08  Score=60.66  Aligned_cols=31  Identities=26%  Similarity=0.398  Sum_probs=25.1

Q ss_pred             ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCccCcc
Q 020075          233 NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVD  270 (331)
Q Consensus       233 H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~  270 (331)
                      +.|+|||.|. |+|+|++++.|.+|+       ||.|..
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~-------py~C~~   34 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ-------AYYCSH   34 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH-------HHTSTT
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC-------CeECcC
Confidence            4688899998 999999999999988       666643

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.60  E-value=2.8e-08  Score=58.61  Aligned_cols=34  Identities=18%  Similarity=0.375  Sum_probs=31.3

Q ss_pred             cccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCc
Q 020075          204 RSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESR  238 (331)
Q Consensus       204 ~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp  238 (331)
                      +|++++||.|.+|++ .|..++.|..|++ |++++|
T Consensus         1 ~H~~~k~~~C~~C~k-~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            1 GSSGKRPFVCRICLS-AFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCCSCEECSSSCC-EESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcCeeCCCCCc-ccCCHHHHHHHHHHcCCCCC
Confidence            367789999999999 9999999999999 999886

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.59  E-value=2.6e-08  Score=58.13  Aligned_cols=32  Identities=19%  Similarity=0.303  Sum_probs=29.7

Q ss_pred             CCccCCCCCCCccCChhHhHHHhh-ccCCCceec
Q 020075          209 KMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKC  241 (331)
Q Consensus       209 k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C  241 (331)
                      +||.|++|++ .|...+.|..|++ |++++||.+
T Consensus         1 kp~~C~~C~k-~F~~~~~L~~H~~~H~~~~~~~r   33 (33)
T 1rim_A            1 YKFACPECPK-RFMRSDHLSKHITLHELLGEERR   33 (33)
T ss_dssp             CCCCCSSSCC-CCSSHHHHHHHHHHHTTTCCCCC
T ss_pred             CcccCCCCCc-hhCCHHHHHHHHHHhCCCCCCCC
Confidence            5899999999 9999999999999 999999863

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=1.6e-08  Score=60.63  Aligned_cols=34  Identities=18%  Similarity=0.364  Sum_probs=31.5

Q ss_pred             hhhcCCCccccccchhhccCHHHHHHH-HHHhcCC
Q 020075          118 VELLAEHIHFCDICGKGFKRDANLRMH-MRAHGDE  151 (331)
Q Consensus       118 ~~h~~~~~~~C~~C~k~F~~~~~L~~H-~~~H~~~  151 (331)
                      ++|.+++||+|..|++.|.....|..| +++|+++
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            568899999999999999999999999 8999875

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.53  E-value=2.6e-09  Score=62.03  Aligned_cols=29  Identities=24%  Similarity=0.400  Sum_probs=14.8

Q ss_pred             CccCCCCCCCccCChhHhHHHhh-ccCCCce
Q 020075          210 MYSCDKCHKKSFSVVSDLRSHYK-NCGESRW  239 (331)
Q Consensus       210 ~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~  239 (331)
                      ||.|+.|++ .|..++.|..|++ |++++||
T Consensus         2 p~~C~~C~k-~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            2 AFACPACPK-RFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CSSSSSSCT-THHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCc-ccCCHHHHHHHHHHHccCCCC
Confidence            455555555 5555555555555 5555544

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.53  E-value=5.9e-08  Score=58.14  Aligned_cols=32  Identities=19%  Similarity=0.487  Sum_probs=23.5

Q ss_pred             ccCCCceecc---CCcccCCHHHHHHHHHhhcCCC
Q 020075          233 NCGESRWKCS---CGTSFSRKDKLFGHVALFEGHM  264 (331)
Q Consensus       233 H~~ekp~~C~---C~k~F~~~~~L~~H~~~H~~e~  264 (331)
                      |++++||.|.   |++.|.+++.|..|+++|++++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            6677777774   7777777777777777777654

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.53  E-value=6.6e-08  Score=54.45  Aligned_cols=29  Identities=24%  Similarity=0.562  Sum_probs=23.6

Q ss_pred             CCceecc-CCcccCCHHHHHHHHHhhcCCC
Q 020075          236 ESRWKCS-CGTSFSRKDKLFGHVALFEGHM  264 (331)
Q Consensus       236 ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~  264 (331)
                      ++||.|. |++.|.....|..|+++|++++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            4788888 8888888888888888887764

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=5e-08  Score=57.80  Aligned_cols=33  Identities=27%  Similarity=0.349  Sum_probs=30.9

Q ss_pred             hhcCCCccccccchhhccCHHHHHHHHHHhcCC
Q 020075          119 ELLAEHIHFCDICGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       119 ~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      +|.+++||+|.+|++.|.....|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            578899999999999999999999999999885

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.49  E-value=8.4e-08  Score=65.67  Aligned_cols=33  Identities=21%  Similarity=0.294  Sum_probs=30.1

Q ss_pred             ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCC
Q 020075          233 NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMP  265 (331)
Q Consensus       233 H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p  265 (331)
                      |.++|||.|. |+|.|.++..|.+|+++|+++..
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~   41 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTSL   41 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSC
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCcc
Confidence            7889999999 99999999999999999998653

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.47  E-value=1.1e-07  Score=53.12  Aligned_cols=28  Identities=21%  Similarity=0.515  Sum_probs=22.1

Q ss_pred             Cceecc-CCcccCCHHHHHHHHHhhcCCC
Q 020075          237 SRWKCS-CGTSFSRKDKLFGHVALFEGHM  264 (331)
Q Consensus       237 kp~~C~-C~k~F~~~~~L~~H~~~H~~e~  264 (331)
                      +||.|. |++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            478888 8888888888888888887653

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.47  E-value=7.1e-08  Score=57.13  Aligned_cols=33  Identities=33%  Similarity=0.669  Sum_probs=30.8

Q ss_pred             hhcCCCccccccchhhccCHHHHHHHHHHhcCC
Q 020075          119 ELLAEHIHFCDICGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       119 ~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      .|.++++|.|.+|++.|.....|..|+++|+++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            467899999999999999999999999999986

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.46  E-value=6.4e-08  Score=58.17  Aligned_cols=35  Identities=17%  Similarity=0.287  Sum_probs=31.8

Q ss_pred             ccCCCCccCC--CCCCCccCChhHhHHHhh-ccCCCcee
Q 020075          205 SHCPKMYSCD--KCHKKSFSVVSDLRSHYK-NCGESRWK  240 (331)
Q Consensus       205 h~~~k~~~C~--~C~k~~f~~~~~L~~H~~-H~~ekp~~  240 (331)
                      |++++||.|.  .|++ .|..++.|..|++ |++++||.
T Consensus         1 H~~~k~~~C~~~~C~k-~f~~~~~L~~H~~~H~~~k~~~   38 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQ-RFTNEDHLAVHKHKHEMTLKFG   38 (38)
T ss_dssp             CTTCCCEECCCTTTCC-EESSHHHHHHHHHHHHTTTTTC
T ss_pred             CCCCcceECCCCCCCc-ccCCHHHHHHHHHHhCCCCCCC
Confidence            5678999999  5999 9999999999999 99999973

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.46  E-value=7.5e-08  Score=53.91  Aligned_cols=28  Identities=32%  Similarity=0.641  Sum_probs=21.5

Q ss_pred             Cceecc-CCcccCCHHHHHHHHHhhcCCC
Q 020075          237 SRWKCS-CGTSFSRKDKLFGHVALFEGHM  264 (331)
Q Consensus       237 kp~~C~-C~k~F~~~~~L~~H~~~H~~e~  264 (331)
                      +||.|. |++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            577888 8888888888888888877653

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.46  E-value=1e-07  Score=56.50  Aligned_cols=33  Identities=18%  Similarity=0.363  Sum_probs=30.3

Q ss_pred             cccCCCCccCCCCCCCccCChhHhHHHhh-ccCCC
Q 020075          204 RSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGES  237 (331)
Q Consensus       204 ~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ek  237 (331)
                      .|++++||.|.+|++ .|..++.|..|++ |++++
T Consensus         3 ~h~~~k~~~C~~C~k-~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            3 SGSSGLLYDCHICER-KFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CSCCCCCEECSSSCC-EESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCCeECCCCCC-ccCCHHHHHHHHHHhcCCC
Confidence            567789999999999 9999999999999 99875

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.45  E-value=1.1e-07  Score=53.01  Aligned_cols=28  Identities=29%  Similarity=0.672  Sum_probs=23.5

Q ss_pred             Cceecc-CCcccCCHHHHHHHHHhhcCCC
Q 020075          237 SRWKCS-CGTSFSRKDKLFGHVALFEGHM  264 (331)
Q Consensus       237 kp~~C~-C~k~F~~~~~L~~H~~~H~~e~  264 (331)
                      +||.|. |++.|.....|..|+++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            578888 8888888888888888888764

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.44  E-value=5.4e-08  Score=62.16  Aligned_cols=33  Identities=33%  Similarity=0.529  Sum_probs=30.0

Q ss_pred             hhcCCCccccccchhhccCHHHHHHHHH-HhcCC
Q 020075          119 ELLAEHIHFCDICGKGFKRDANLRMHMR-AHGDE  151 (331)
Q Consensus       119 ~h~~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~  151 (331)
                      +|++++||.|.+|++.|.....|..|++ +|+++
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC-
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCC
Confidence            4788999999999999999999999999 99987

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.43  E-value=1.3e-07  Score=56.08  Aligned_cols=34  Identities=21%  Similarity=0.423  Sum_probs=30.8

Q ss_pred             ccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCC
Q 020075          203 KRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGES  237 (331)
Q Consensus       203 ~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ek  237 (331)
                      +.|++++||.|.+|++ .|.....|..|++ |++++
T Consensus         2 ~~h~~~k~~~C~~C~k-~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            2 SSGSSGKPFKCSLCEY-ATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             CSSCCCCSEECSSSSC-EESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCCccCCCCCc-hhCCHHHHHHHHHHhccCC
Confidence            3577889999999999 9999999999999 99875

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.43  E-value=1.1e-07  Score=56.44  Aligned_cols=33  Identities=33%  Similarity=0.580  Sum_probs=30.5

Q ss_pred             hhcCCCccccccchhhccCHHHHHHHHHHhcCC
Q 020075          119 ELLAEHIHFCDICGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       119 ~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      .|.+++||.|.+|++.|.....|..|+++|+++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            467789999999999999999999999999885

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.43  E-value=8.6e-08  Score=57.23  Aligned_cols=34  Identities=24%  Similarity=0.341  Sum_probs=31.0

Q ss_pred             ccccCCCCccCCCCCCCccCCh-hHhHHHhh-ccCCC
Q 020075          203 KRSHCPKMYSCDKCHKKSFSVV-SDLRSHYK-NCGES  237 (331)
Q Consensus       203 ~~h~~~k~~~C~~C~k~~f~~~-~~L~~H~~-H~~ek  237 (331)
                      ++|++++||.|++|++ .|..+ +.|..|++ |++++
T Consensus         2 ~~h~~~k~~~C~~C~k-~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDF-YFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CSCCCCCCEECSSSSC-EECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCeECCCCCh-hhccCHHHHHHHHHhcCCCC
Confidence            4678889999999999 99999 99999999 99875

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.42  E-value=1.3e-07  Score=53.19  Aligned_cols=29  Identities=14%  Similarity=0.316  Sum_probs=22.6

Q ss_pred             Cceecc-CCcccCCHHHHHHHHHhhcCCCC
Q 020075          237 SRWKCS-CGTSFSRKDKLFGHVALFEGHMP  265 (331)
Q Consensus       237 kp~~C~-C~k~F~~~~~L~~H~~~H~~e~p  265 (331)
                      +||.|. |++.|...+.|..|+++|+++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            477888 88888888888888888877654

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.40  E-value=1.7e-07  Score=51.62  Aligned_cols=26  Identities=19%  Similarity=0.359  Sum_probs=21.5

Q ss_pred             CCceecc-CCcccCCHHHHHHHHHhhc
Q 020075          236 ESRWKCS-CGTSFSRKDKLFGHVALFE  261 (331)
Q Consensus       236 ekp~~C~-C~k~F~~~~~L~~H~~~H~  261 (331)
                      ++||.|. ||+.|...+.|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            4788888 8888888888888888874

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.39  E-value=1.4e-07  Score=52.31  Aligned_cols=27  Identities=33%  Similarity=0.682  Sum_probs=20.5

Q ss_pred             CCceecc-CCcccCCHHHHHHHHHhhcC
Q 020075          236 ESRWKCS-CGTSFSRKDKLFGHVALFEG  262 (331)
Q Consensus       236 ekp~~C~-C~k~F~~~~~L~~H~~~H~~  262 (331)
                      ++||.|. |++.|.+...|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            4677888 88888888888888777754

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.39  E-value=1.3e-07  Score=52.73  Aligned_cols=28  Identities=21%  Similarity=0.491  Sum_probs=21.6

Q ss_pred             Cceecc-CCcccCCHHHHHHHHHhhcCCC
Q 020075          237 SRWKCS-CGTSFSRKDKLFGHVALFEGHM  264 (331)
Q Consensus       237 kp~~C~-C~k~F~~~~~L~~H~~~H~~e~  264 (331)
                      +||.|. |++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            577888 8888888888888888877653

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.38  E-value=3.2e-08  Score=57.27  Aligned_cols=31  Identities=23%  Similarity=0.299  Sum_probs=28.0

Q ss_pred             Cceecc-CCcccCCHHHHHHHHHhhcCCCCcc
Q 020075          237 SRWKCS-CGTSFSRKDKLFGHVALFEGHMPEV  267 (331)
Q Consensus       237 kp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~  267 (331)
                      +||.|. |++.|.+.+.|..|+++|++++||.
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   32 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVALG   32 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSCC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCCC
Confidence            589999 9999999999999999999999873

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.38  E-value=1.4e-07  Score=52.09  Aligned_cols=26  Identities=12%  Similarity=0.397  Sum_probs=21.2

Q ss_pred             CCceecc-CCcccCCHHHHHHHHHhhc
Q 020075          236 ESRWKCS-CGTSFSRKDKLFGHVALFE  261 (331)
Q Consensus       236 ekp~~C~-C~k~F~~~~~L~~H~~~H~  261 (331)
                      ++||.|. |++.|.+.+.|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            4788888 8888888888888888774

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.72  E-value=4.5e-08  Score=54.93  Aligned_cols=28  Identities=29%  Similarity=0.688  Sum_probs=21.3

Q ss_pred             Cceecc-CCcccCCHHHHHHHHHhhcCCC
Q 020075          237 SRWKCS-CGTSFSRKDKLFGHVALFEGHM  264 (331)
Q Consensus       237 kp~~C~-C~k~F~~~~~L~~H~~~H~~e~  264 (331)
                      +||.|. |++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            467788 8888888888888888777653

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.72  E-value=4.6e-08  Score=55.24  Aligned_cols=29  Identities=24%  Similarity=0.508  Sum_probs=21.9

Q ss_pred             CCceecc-CCcccCCHHHHHHHHHhhcCCC
Q 020075          236 ESRWKCS-CGTSFSRKDKLFGHVALFEGHM  264 (331)
Q Consensus       236 ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~  264 (331)
                      ++||.|. |++.|.....|..|+++|++++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            4677888 8888888888888888777653

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.29  E-value=1.8e-07  Score=59.25  Aligned_cols=38  Identities=21%  Similarity=0.469  Sum_probs=33.7

Q ss_pred             hcccccccCCCCccCC--CCCCCccCChhHhHHHhh-ccCCC
Q 020075          199 KNHFKRSHCPKMYSCD--KCHKKSFSVVSDLRSHYK-NCGES  237 (331)
Q Consensus       199 ~~H~~~h~~~k~~~C~--~C~k~~f~~~~~L~~H~~-H~~ek  237 (331)
                      ..|+..|++++||.|+  .|++ .|..++.|..|++ |+++|
T Consensus         7 ~~~~~~H~~~k~~~C~~~~C~k-~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            7 IDKYVKEMPDKTFECLFPGCTK-TFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSCEEETTTEEECCCTTCCC-EECSSSSHHHHHHHHTTTC
T ss_pred             HHHHhccCCCCCeECCCCCCCC-ccCCHHHHHHHHHHccCCC
Confidence            3556779999999996  7999 9999999999999 99875

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.27  E-value=3e-07  Score=50.40  Aligned_cols=25  Identities=32%  Similarity=0.650  Sum_probs=16.8

Q ss_pred             ceecc-CCcccCCHHHHHHHHHhhcC
Q 020075          238 RWKCS-CGTSFSRKDKLFGHVALFEG  262 (331)
Q Consensus       238 p~~C~-C~k~F~~~~~L~~H~~~H~~  262 (331)
                      ||.|. |++.|.+...|..|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            46677 77777777777777776665

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.26  E-value=2.4e-07  Score=55.25  Aligned_cols=31  Identities=32%  Similarity=0.559  Sum_probs=27.1

Q ss_pred             ccCCCCccCCCCCCCccCChhHhHHHhhccCCCceecc
Q 020075          205 SHCPKMYSCDKCHKKSFSVVSDLRSHYKNCGESRWKCS  242 (331)
Q Consensus       205 h~~~k~~~C~~C~k~~f~~~~~L~~H~~H~~ekp~~C~  242 (331)
                      +.++|||.|+.|+| +|.++++|..|+      ||.|.
T Consensus         3 ~~gekp~~C~~CgK-~F~~~s~L~~H~------py~C~   33 (36)
T 1fv5_A            3 LLKPARFMCLPCGI-AFSSPSTLEAHQ------AYYCS   33 (36)
T ss_dssp             SSSCCCCEETTTTE-ECSCHHHHHHHH------HHTST
T ss_pred             CCCccCeECCCCCC-ccCCHhHccCcC------CeECc
Confidence            45789999999999 999999999998      66664

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.26  E-value=4.7e-07  Score=54.05  Aligned_cols=33  Identities=30%  Similarity=0.518  Sum_probs=29.7

Q ss_pred             cccCCCCccCCC--CCCCccCChhHhHHHhh-ccCCC
Q 020075          204 RSHCPKMYSCDK--CHKKSFSVVSDLRSHYK-NCGES  237 (331)
Q Consensus       204 ~h~~~k~~~C~~--C~k~~f~~~~~L~~H~~-H~~ek  237 (331)
                      .|++++||.|.+  |++ .|..++.|..|++ |++++
T Consensus         2 ~~~~~k~~~C~~~~C~k-~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGK-VYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             CSSSCCCEECCSTTCCC-EESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCC-ccCCHHHHHHHHHhcCCCC
Confidence            467789999985  999 9999999999999 99875

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.25  E-value=3.7e-07  Score=50.18  Aligned_cols=27  Identities=26%  Similarity=0.589  Sum_probs=25.2

Q ss_pred             CCccccccchhhccCHHHHHHHHHHhc
Q 020075          123 EHIHFCDICGKGFKRDANLRMHMRAHG  149 (331)
Q Consensus       123 ~~~~~C~~C~k~F~~~~~L~~H~~~H~  149 (331)
                      ++||.|..||+.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            479999999999999999999999985

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.25  E-value=4.1e-07  Score=62.18  Aligned_cols=33  Identities=36%  Similarity=0.579  Sum_probs=30.7

Q ss_pred             hhcCCCccccccchhhccCHHHHHHHHHHhcCC
Q 020075          119 ELLAEHIHFCDICGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       119 ~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      .+.+++||+|.+|++.|.....|..|+++|+++
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~   39 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQHGVT   39 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTT
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhhCCC
Confidence            356799999999999999999999999999986

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.24  E-value=3e-07  Score=51.78  Aligned_cols=27  Identities=30%  Similarity=0.805  Sum_probs=16.2

Q ss_pred             Cceecc-CCcccCCHHHHHHH-HHhhcCC
Q 020075          237 SRWKCS-CGTSFSRKDKLFGH-VALFEGH  263 (331)
Q Consensus       237 kp~~C~-C~k~F~~~~~L~~H-~~~H~~e  263 (331)
                      +||.|. |++.|.+.+.|..| +++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            356666 66666666666666 4556554

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.24  E-value=5.6e-07  Score=51.21  Aligned_cols=21  Identities=38%  Similarity=0.743  Sum_probs=10.8

Q ss_pred             CCcccCCHHHHHHHHHhhcCC
Q 020075          243 CGTSFSRKDKLFGHVALFEGH  263 (331)
Q Consensus       243 C~k~F~~~~~L~~H~~~H~~e  263 (331)
                      |++.|.+.+.|..|+++|+++
T Consensus        10 C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A           10 CGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcccCCHhHHHHHHHHhcCC
Confidence            555555555555555555443

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.23  E-value=2.9e-07  Score=51.01  Aligned_cols=28  Identities=29%  Similarity=0.595  Sum_probs=25.9

Q ss_pred             CCccccccchhhccCHHHHHHHHHHhcC
Q 020075          123 EHIHFCDICGKGFKRDANLRMHMRAHGD  150 (331)
Q Consensus       123 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~  150 (331)
                      ++||.|..|++.|.....|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            4789999999999999999999999875

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.21  E-value=2.9e-07  Score=50.71  Aligned_cols=27  Identities=30%  Similarity=0.552  Sum_probs=25.0

Q ss_pred             CCccccccchhhccCHHHHHHHHHHhc
Q 020075          123 EHIHFCDICGKGFKRDANLRMHMRAHG  149 (331)
Q Consensus       123 ~~~~~C~~C~k~F~~~~~L~~H~~~H~  149 (331)
                      ++||+|..||+.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            479999999999999999999999874

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.18  E-value=1e-06  Score=49.31  Aligned_cols=29  Identities=31%  Similarity=0.517  Sum_probs=26.5

Q ss_pred             CCCccCCCCCCCccCChhHhHHHhh-ccCCC
Q 020075          208 PKMYSCDKCHKKSFSVVSDLRSHYK-NCGES  237 (331)
Q Consensus       208 ~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ek  237 (331)
                      ++||.|..|++ .|.....|..|++ |++++
T Consensus         1 ~k~~~C~~C~~-~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGR-SFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCC-EESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCc-ccCCHHHHHHHHHHhccCC
Confidence            37899999999 9999999999999 98875

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.47  E-value=2.3e-07  Score=50.51  Aligned_cols=25  Identities=24%  Similarity=0.696  Sum_probs=18.9

Q ss_pred             Cceecc-CCcccCCHHHHHHHHHhhc
Q 020075          237 SRWKCS-CGTSFSRKDKLFGHVALFE  261 (331)
Q Consensus       237 kp~~C~-C~k~F~~~~~L~~H~~~H~  261 (331)
                      |||.|. ||+.|.+.+.|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            477787 8888888778887777763

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.15  E-value=1.3e-06  Score=48.48  Aligned_cols=28  Identities=25%  Similarity=0.784  Sum_probs=25.7

Q ss_pred             CCccCCCCCCCccCChhHhHHHhh-ccCCC
Q 020075          209 KMYSCDKCHKKSFSVVSDLRSHYK-NCGES  237 (331)
Q Consensus       209 k~~~C~~C~k~~f~~~~~L~~H~~-H~~ek  237 (331)
                      +||.|++|++ .|...+.|..|++ |++++
T Consensus         1 k~~~C~~C~~-~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTR-AFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCC-BCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCc-ccCCHHHHHHHHHHhcCCC
Confidence            5799999999 9999999999999 98875

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.15  E-value=9.3e-07  Score=49.19  Aligned_cols=28  Identities=21%  Similarity=0.434  Sum_probs=25.6

Q ss_pred             CCccCCCCCCCccCChhHhHHHhh-ccCCC
Q 020075          209 KMYSCDKCHKKSFSVVSDLRSHYK-NCGES  237 (331)
Q Consensus       209 k~~~C~~C~k~~f~~~~~L~~H~~-H~~ek  237 (331)
                      +||.|+.|++ .|...+.|..|++ |++++
T Consensus         1 k~~~C~~C~k-~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPK-RFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSC-EESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCc-hhCCHHHHHHHHHHhcCCC
Confidence            5799999999 9999999999999 98875

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.41  E-value=3.3e-07  Score=51.26  Aligned_cols=28  Identities=36%  Similarity=0.701  Sum_probs=26.2

Q ss_pred             CccccccchhhccCHHHHHHHHHHhcCC
Q 020075          124 HIHFCDICGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       124 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      +||.|.+||+.|.....|..|+++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            5899999999999999999999999875

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.12  E-value=6.4e-07  Score=49.02  Aligned_cols=27  Identities=26%  Similarity=0.593  Sum_probs=24.1

Q ss_pred             ccccccchhhccCHHHHHHHHHHhcCC
Q 020075          125 IHFCDICGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       125 ~~~C~~C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      ||+|.+||+.|.....|..|+++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            689999999999999999999999863

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.40  E-value=3.5e-07  Score=51.43  Aligned_cols=29  Identities=28%  Similarity=0.476  Sum_probs=26.9

Q ss_pred             CCccccccchhhccCHHHHHHHHHHhcCC
Q 020075          123 EHIHFCDICGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       123 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      ++||.|..||+.|.....|..|+++|+++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            46899999999999999999999999875

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.10  E-value=1.1e-06  Score=50.37  Aligned_cols=29  Identities=31%  Similarity=0.615  Sum_probs=27.0

Q ss_pred             CCccccc--cchhhccCHHHHHHHHHHhcCC
Q 020075          123 EHIHFCD--ICGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       123 ~~~~~C~--~C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      ++||.|.  .||+.|.....|..|+++|+++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            4799999  8999999999999999999985

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.09  E-value=2.4e-06  Score=48.46  Aligned_cols=28  Identities=29%  Similarity=0.692  Sum_probs=25.6

Q ss_pred             CCccCC--CCCCCccCChhHhHHHhh-ccCCC
Q 020075          209 KMYSCD--KCHKKSFSVVSDLRSHYK-NCGES  237 (331)
Q Consensus       209 k~~~C~--~C~k~~f~~~~~L~~H~~-H~~ek  237 (331)
                      +||.|+  .|++ .|...+.|..|++ |++++
T Consensus         1 kp~~C~~~~C~k-~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGK-RFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCC-BCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCc-ccCCHhHHHHHHHHhcCCC
Confidence            579998  9999 9999999999999 99875

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.36  E-value=4.3e-07  Score=49.41  Aligned_cols=26  Identities=35%  Similarity=0.728  Sum_probs=24.2

Q ss_pred             CccccccchhhccCHHHHHHHHHHhc
Q 020075          124 HIHFCDICGKGFKRDANLRMHMRAHG  149 (331)
Q Consensus       124 ~~~~C~~C~k~F~~~~~L~~H~~~H~  149 (331)
                      +||.|..||+.|.....|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            58999999999999999999999884

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.08  E-value=2.4e-06  Score=48.77  Aligned_cols=27  Identities=41%  Similarity=0.687  Sum_probs=15.8

Q ss_pred             CCccCC--CCCCCccCChhHhHHHhh-ccCC
Q 020075          209 KMYSCD--KCHKKSFSVVSDLRSHYK-NCGE  236 (331)
Q Consensus       209 k~~~C~--~C~k~~f~~~~~L~~H~~-H~~e  236 (331)
                      +||.|.  .|++ .|...+.|..|++ |+++
T Consensus         2 k~~~C~~~~C~k-~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDK-AFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCC-CBSSSHHHHHHHGGGTCC
T ss_pred             CCCcCcCCCCCC-ccCCHHHHHHHHHHccCC
Confidence            455665  5666 5666666666665 5554

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.08  E-value=1.7e-06  Score=48.30  Aligned_cols=29  Identities=28%  Similarity=0.561  Sum_probs=26.3

Q ss_pred             CCccCCCCCCCccCChhHhHHHhh-ccCCCc
Q 020075          209 KMYSCDKCHKKSFSVVSDLRSHYK-NCGESR  238 (331)
Q Consensus       209 k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp  238 (331)
                      ++|.|..|++ .|...+.|..|++ |+++++
T Consensus         1 k~~~C~~C~k-~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEF-RSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSC-CCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCC-ccCCHHHHHHHHHHHccCCC
Confidence            5799999999 9999999999999 988764

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.07  E-value=1.6e-06  Score=48.13  Aligned_cols=28  Identities=29%  Similarity=0.707  Sum_probs=25.7

Q ss_pred             CCccCCCCCCCccCChhHhHHHhh-ccCCC
Q 020075          209 KMYSCDKCHKKSFSVVSDLRSHYK-NCGES  237 (331)
Q Consensus       209 k~~~C~~C~k~~f~~~~~L~~H~~-H~~ek  237 (331)
                      +||.|..|++ .|.....|..|++ |++++
T Consensus         1 ~~~~C~~C~k-~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGK-QFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSC-EESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCC-ccCChhHHHHHHHHhcCCC
Confidence            5799999999 9999999999999 98875

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.06  E-value=1.8e-06  Score=47.82  Aligned_cols=28  Identities=32%  Similarity=0.700  Sum_probs=25.7

Q ss_pred             CCccCCCCCCCccCChhHhHHHhh-ccCCC
Q 020075          209 KMYSCDKCHKKSFSVVSDLRSHYK-NCGES  237 (331)
Q Consensus       209 k~~~C~~C~k~~f~~~~~L~~H~~-H~~ek  237 (331)
                      +||.|+.|++ .|.....|..|++ |++++
T Consensus         1 k~~~C~~C~~-~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDK-KFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCC-CCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCc-ccCCHHHHHHHHHHhccCC
Confidence            5899999999 9999999999999 98875

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.98  E-value=4.1e-06  Score=46.82  Aligned_cols=28  Identities=32%  Similarity=0.643  Sum_probs=25.2

Q ss_pred             CCccCCCCCCCccCChhHhHHH-hh-ccCCC
Q 020075          209 KMYSCDKCHKKSFSVVSDLRSH-YK-NCGES  237 (331)
Q Consensus       209 k~~~C~~C~k~~f~~~~~L~~H-~~-H~~ek  237 (331)
                      +||.|..|++ .|...+.|..| ++ |++++
T Consensus         1 k~~~C~~C~k-~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNR-AFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCC-BCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCc-ccCChHHHHHHHHHHccCCC
Confidence            5799999999 99999999999 67 98875

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.87  E-value=4.2e-06  Score=46.34  Aligned_cols=27  Identities=26%  Similarity=0.636  Sum_probs=25.1

Q ss_pred             Cccccc--cchhhccCHHHHHHHHHHhcC
Q 020075          124 HIHFCD--ICGKGFKRDANLRMHMRAHGD  150 (331)
Q Consensus       124 ~~~~C~--~C~k~F~~~~~L~~H~~~H~~  150 (331)
                      ++|.|.  .|++.|.....|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            479999  999999999999999999975

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.57  E-value=0.00014  Score=49.10  Aligned_cols=46  Identities=22%  Similarity=0.416  Sum_probs=41.1

Q ss_pred             CCCCCCccCChhHhHHHh-h-ccCCC------ceecc---CCcccCCHHHHHHHHHhh
Q 020075          214 DKCHKKSFSVVSDLRSHY-K-NCGES------RWKCS---CGTSFSRKDKLFGHVALF  260 (331)
Q Consensus       214 ~~C~k~~f~~~~~L~~H~-~-H~~ek------p~~C~---C~k~F~~~~~L~~H~~~H  260 (331)
                      ..|++ .|.+...|..|+ + |.+.+      +|.|.   |++.+.....|..|+++.
T Consensus         7 ~~C~~-~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            7 KECPE-SASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             TTCCC-CCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCCC-cCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            56999 999999999998 4 97765      89995   999999999999999975

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.54  E-value=2.9e-05  Score=42.70  Aligned_cols=24  Identities=33%  Similarity=0.713  Sum_probs=13.7

Q ss_pred             CccCC--CCCCCccCChhHhHHHhh-cc
Q 020075          210 MYSCD--KCHKKSFSVVSDLRSHYK-NC  234 (331)
Q Consensus       210 ~~~C~--~C~k~~f~~~~~L~~H~~-H~  234 (331)
                      +|.|.  .|++ .|...+.|..|++ |+
T Consensus         2 ~~~C~~~~C~k-~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGR-SFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCE-EESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCcC-ccCCHHHHHHHHHHhC
Confidence            45555  5555 5555555555555 54

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.90  E-value=0.00018  Score=54.91  Aligned_cols=30  Identities=20%  Similarity=0.273  Sum_probs=26.9

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHh
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVAL  259 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~  259 (331)
                      +.. |+|++||.|. |+|.|.+...|..|+++
T Consensus        41 ~ded~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           41 FDPDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SCSSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            345 8999999999 99999999999999876

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.18  E-value=0.00081  Score=51.31  Aligned_cols=30  Identities=30%  Similarity=0.588  Sum_probs=27.1

Q ss_pred             hhhcCCCccccccchhhccCHHHHHHHHHH
Q 020075          118 VELLAEHIHFCDICGKGFKRDANLRMHMRA  147 (331)
Q Consensus       118 ~~h~~~~~~~C~~C~k~F~~~~~L~~H~~~  147 (331)
                      ..|+|+++|.|..|++.|.+...|..|+++
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            356889999999999999999999999864

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.92  E-value=0.005  Score=47.51  Aligned_cols=26  Identities=19%  Similarity=0.300  Sum_probs=23.0

Q ss_pred             ccCCCceecc-CCcccCCHHHHHHHHH
Q 020075          233 NCGESRWKCS-CGTSFSRKDKLFGHVA  258 (331)
Q Consensus       233 H~~ekp~~C~-C~k~F~~~~~L~~H~~  258 (331)
                      +.+.+.|.|. |.+.|.+...|..|..
T Consensus        88 ~~~~~~~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           88 DGEDRSKCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             SCCCTTTEETTTTEECSSHHHHHHHHT
T ss_pred             cCCCCCeEcCCCCCEeCCHHHHHHHHC
Confidence            5567789999 9999999999999985

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=95.62  E-value=0.013  Score=39.26  Aligned_cols=48  Identities=13%  Similarity=0.072  Sum_probs=41.6

Q ss_pred             CCCCCCCCCchhhhhhh-hhhcCCC------ccccc--cchhhccCHHHHHHHHHHh
Q 020075          101 GSEHDIESDCEIVEIDA-VELLAEH------IHFCD--ICGKGFKRDANLRMHMRAH  148 (331)
Q Consensus       101 ~~~~~~~~~~~~l~~h~-~~h~~~~------~~~C~--~C~k~F~~~~~L~~H~~~H  148 (331)
                      ..|.+.|.....|..|+ +.|.+.+      +|.|.  .|++.+.....|..|+++.
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            46889999999999998 5887766      89997  6999999999999999875

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.61  E-value=0.02  Score=46.34  Aligned_cols=66  Identities=15%  Similarity=0.313  Sum_probs=46.9

Q ss_pred             HHhcccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCCCCc
Q 020075          197 CVKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGHMPE  266 (331)
Q Consensus       197 ~l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e~p~  266 (331)
                      .+..|.. .-.-++..|+.|+. .+ .+..|..|+. .-..++-.|. |+..|. ...|..|..++.|+.++
T Consensus        98 ~l~~H~~-~C~~~~v~C~~C~~-~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~-~~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A           98 HLEDHQA-HCEFALMDCPQCQR-PF-QKFHINIHILKDCPRRQVSCDNCAASMA-FEDKEIHDQNCPLALEH  165 (170)
T ss_dssp             GHHHHHT-TCTTSEEECTTTCC-EE-EGGGHHHHHHHTCTTCEEECTTTCCEEE-GGGHHHHHTTCCC----
T ss_pred             HHHHHHh-cCCceeeECCCCCh-HH-HHHHHHHHhhhhCCCCCeECCCCCCccC-HHHHHhHHHhCcChhhh
Confidence            3556652 22236788999998 66 6777899997 7788888999 998875 46778999999888765

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.34  E-value=0.015  Score=35.77  Aligned_cols=23  Identities=30%  Similarity=0.679  Sum_probs=17.8

Q ss_pred             Cceecc-CCcccCCHHHHHHHHHh
Q 020075          237 SRWKCS-CGTSFSRKDKLFGHVAL  259 (331)
Q Consensus       237 kp~~C~-C~k~F~~~~~L~~H~~~  259 (331)
                      -+|.|+ |++.|.....|+.||+-
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            467788 88888888888888873

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.29  E-value=0.012  Score=45.31  Aligned_cols=83  Identities=16%  Similarity=0.240  Sum_probs=52.2

Q ss_pred             CCccccccchhhccCHHHHHHHH--HHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHHhc
Q 020075          123 EHIHFCDICGKGFKRDANLRMHM--RAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKN  200 (331)
Q Consensus       123 ~~~~~C~~C~k~F~~~~~L~~H~--~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~  200 (331)
                      .+++.|.+|+..|.+...+..|.  +.|....       +.+.+. ++...+    .-+          +.+..    ..
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v-------~~~~~~-~~~~~~----~~~----------~~~~~----~~   83 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKV-------RRYMAI-NQGEDS----VPA----------KKFKA----AP   83 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHHHH-------HHHHHH-TTCCCC----CSC----------CCCSC----CS
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHH-------HHHhcc-cCcccC----CCC----------CccCC----Cc
Confidence            36799999999999999999999  5674320       111110 110000    000          11110    01


Q ss_pred             ccccccCCCCccCCCCCCCccCChhHhHHHhh
Q 020075          201 HFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK  232 (331)
Q Consensus       201 H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~  232 (331)
                      +...+...+.|-|.+|++ .|.+...|..|+.
T Consensus        84 ~~~~~~~~~~~~C~~C~~-~f~s~~~~~~H~~  114 (127)
T 1zu1_A           84 AEISDGEDRSKCCPVCNM-TFSSPVVAESHYI  114 (127)
T ss_dssp             SCCSSCCCTTTEETTTTE-ECSSHHHHHHHHT
T ss_pred             cccccCCCCCeEcCCCCC-EeCCHHHHHHHHC
Confidence            223445567899999999 9999999999986

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.82  E-value=0.039  Score=33.91  Aligned_cols=23  Identities=30%  Similarity=0.602  Sum_probs=21.0

Q ss_pred             CCccCCCCCCCccCChhHhHHHhh
Q 020075          209 KMYSCDKCHKKSFSVVSDLRSHYK  232 (331)
Q Consensus       209 k~~~C~~C~k~~f~~~~~L~~H~~  232 (331)
                      -+|.|+.|+. .|.....|+.||+
T Consensus        11 ~~~~CPrCn~-~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNA-QFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCC-CCSSHHHHHHHHH
T ss_pred             CceeCCcccc-cccchHHHHhhhh
Confidence            5689999999 9999999999998

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=86.69  E-value=0.92  Score=26.07  Aligned_cols=24  Identities=25%  Similarity=0.574  Sum_probs=18.1

Q ss_pred             Cceecc-CCcccCCHHHHHHHHHhh
Q 020075          237 SRWKCS-CGTSFSRKDKLFGHVALF  260 (331)
Q Consensus       237 kp~~C~-C~k~F~~~~~L~~H~~~H  260 (331)
                      .++.|. |+-+|.....+..|++..
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk~Y   31 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQFY   31 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHHHT
T ss_pred             CcCeeccccceehhhHHHhhhheec
Confidence            457788 888888888888887654

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=85.91  E-value=0.49  Score=27.05  Aligned_cols=21  Identities=33%  Similarity=0.822  Sum_probs=15.8

Q ss_pred             ccCCCCCCCccCChhHhHHHhh
Q 020075          211 YSCDKCHKKSFSVVSDLRSHYK  232 (331)
Q Consensus       211 ~~C~~C~k~~f~~~~~L~~H~~  232 (331)
                      |.|++|.+ .|.+...|..|..
T Consensus         6 FiCP~C~~-~l~s~~~L~~Hye   26 (34)
T 3mjh_B            6 FICPQCMK-SLGSADELFKHYE   26 (34)
T ss_dssp             EECTTTCC-EESSHHHHHHHHH
T ss_pred             cCCcHHHH-HcCCHHHHHHHHH
Confidence            67777777 7777777777765

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=84.79  E-value=0.21  Score=35.20  Aligned_cols=31  Identities=29%  Similarity=0.506  Sum_probs=20.8

Q ss_pred             ceecc-CCcccCCHHHHHHHHHhhcCCCCccCccc
Q 020075          238 RWKCS-CGTSFSRKDKLFGHVALFEGHMPEVEVDE  271 (331)
Q Consensus       238 p~~C~-C~k~F~~~~~L~~H~~~H~~e~p~~c~~~  271 (331)
                      -..|- |||.|.   .|.+|+++|+|-.|..+..-
T Consensus        21 ~iiClecGK~fK---~LkRHL~~~hgltpeeYR~k   52 (87)
T 2jsp_A           21 HIVCLECGGSFK---SLKRHLTTHHSMTPEEYREK   52 (87)
T ss_dssp             CEECTBTCCEES---BHHHHHHHTTCSCHHHHHHH
T ss_pred             ceEecccchhhH---HHHHHHHHccCCCHHHHHHH
Confidence            35677 777777   46678877777776555433

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=83.42  E-value=1.1  Score=25.56  Aligned_cols=22  Identities=32%  Similarity=0.667  Sum_probs=20.3

Q ss_pred             ceecc-CCcccCCHHHHHHHHHh
Q 020075          238 RWKCS-CGTSFSRKDKLFGHVAL  259 (331)
Q Consensus       238 p~~C~-C~k~F~~~~~L~~H~~~  259 (331)
                      .|.|+ |-+.|.+...|..|...
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~   27 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEA   27 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHH
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHh
Confidence            49999 99999999999999865

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=80.70  E-value=0.68  Score=31.87  Aligned_cols=45  Identities=22%  Similarity=0.494  Sum_probs=32.9

Q ss_pred             CCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHH
Q 020075          209 KMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGH  256 (331)
Q Consensus       209 k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H  256 (331)
                      --|.|+.||. .+ .+..|..|.. -.+-..|.|- |++.|.. ..++.|
T Consensus         9 V~F~C~~Cgd-~l-KK~kv~~H~~~Cr~~~~~SCIDC~~~F~~-~~y~~H   55 (79)
T 1wjv_A            9 VFFTCNACGE-SV-KKIQVEKHVSNCRNCECLSCIDCGKDFWG-DDYKSH   55 (79)
T ss_dssp             CEEEESSSCC-EE-ETTHHHHHHHHCTTCCEEEETTTTEEEEG-GGTTTC
T ss_pred             eEEEcCCCCC-ee-ecccchhHHhhCCCCCcEEecccCCeeCC-CCEeCE
Confidence            3488999997 55 4567888977 5666679999 9999985 444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	331
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	2e-04
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	5e-04
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	6e-04
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	0.001
d2dmda2	26	g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {H	0.001
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.002
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	0.002
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.002
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	0.002

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 123 EHIHFCDICGKGFKRDANLRMHMRAHGDE 151
           E  + C  C K F++   L MH + + D 
Sbjct: 6   EKPYACSHCDKTFRQKQLLDMHFKRYHDP 34

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (81), Expect = 5e-04
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query: 128 CDICGKGFKRDANLRMHMRAHGDE 151
           C  CGK F R + L  H R H  E
Sbjct: 10  CVECGKAFSRSSILVQHQRVHTGE 33

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 34.5 bits (80), Expect = 6e-04
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 128 CDICGKGFKRDANLRMHMRAH 148
           C++C + F R  +L+ H R+H
Sbjct: 5   CEVCTRAFARQEHLKRHYRSH 25

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.7 bits (78), Expect = 0.001
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 128 CDICGKGFKRDANLRMHMRAH 148
           C IC + F R  +L  H+R H
Sbjct: 6   CRICMRNFSRSDHLTTHIRTH 26

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (76), Expect = 0.001
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 126 HFCDICGKGFKRDANLRMHMRAH 148
           H C++CGK F R   L+ HMR H
Sbjct: 2   HKCEVCGKCFSRKDKLKTHMRCH 24

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (77), Expect = 0.002
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 124 HIHFCDICGKGFKRDANLRMHMRAH 148
             + C +CGK FK   +L  HM+ H
Sbjct: 29  RPYGCGVCGKKFKMKHHLVGHMKIH 53

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.2 bits (76), Expect = 0.002
 Identities = 9/29 (31%), Positives = 12/29 (41%)

Query: 123 EHIHFCDICGKGFKRDANLRMHMRAHGDE 151
           +    C IC   F   AN   H++ H D 
Sbjct: 5   KRPFVCRICLSAFTTKANCARHLKVHTDT 33

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (76), Expect = 0.002
 Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 1/25 (4%)

Query: 128 CDICGKGFKRDANLRMH-MRAHGDE 151
           C IC   F +   ++MH ++ H + 
Sbjct: 11  CYICHARFTQSGTMKMHILQKHTEN 35

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (75), Expect = 0.002
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 128 CDICGKGFKRDANLRMHMRAH 148
           C  C K F R  +L  H++ H
Sbjct: 5   CPECPKRFMRSDHLSKHIKTH 25

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	331
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.67
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.53
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.39
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.36
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.26
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.25
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.24
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.23
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.22
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.19
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.18
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.17
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.15
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.14
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.13
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.13
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.08
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.07
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.03
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.01
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.0
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.97
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.93
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.93
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.92
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.9
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.88
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.84
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.84
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.81
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.8
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.71
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.64
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.58
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.57
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.56
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.52
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.5
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.47
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.42
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.37
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.33
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.18
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.17
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.14
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.13
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.12
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.06
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.05
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.0
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.88
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.84
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.79
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.76
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.68
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.66
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.65
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.64
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.6
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.59
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.59
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.58
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.45
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.39
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.26
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.25
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.23
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.18
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.17
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.06
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.01
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.99
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.99
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.94
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.9
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.88
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.83
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.8
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.63
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.6
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.56
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.31
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.26
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.06
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.05
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.05
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.03
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.91
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.9
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.77
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.65
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.17
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.15
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.11
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.94
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	94.85
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	94.65
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.34
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	93.95
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.74
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	93.66
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	93.12
d1y0jb1	36	U-shaped transcription factor, different fingers {	91.93
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	90.89
d2dkta1	74	RING finger and CHY zinc finger domain-containing	90.56
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	90.01
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	88.8
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	87.86
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	87.84
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	87.17
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	86.56
d1y0jb1	36	U-shaped transcription factor, different fingers {	86.32
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	85.85
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	84.68
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	84.15
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	83.74
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	83.67
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	83.16
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	83.08

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.3e-17  Score=108.75  Aligned_cols=51  Identities=35%  Similarity=0.773  Sum_probs=49.2

Q ss_pred             CCCccCCCCCCCccCChhHhHHHhh-ccCCCceecc-CCcccCCHHHHHHHHHhh
Q 020075          208 PKMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALF  260 (331)
Q Consensus       208 ~k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H  260 (331)
                      ||||.|+ ||+ .|..+..|..|++ |+|++||.|. ||++|.+.+.|..|+++|
T Consensus         1 EK~y~C~-Cgk-~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGK-SFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSC-EESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCC-eECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            5899995 999 9999999999999 9999999999 999999999999999987

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.4e-15  Score=97.72  Aligned_cols=52  Identities=31%  Similarity=0.641  Sum_probs=42.1

Q ss_pred             CCccccccchhhccCHHHHHHHHHHhcCCCCCchhccCCcccccCCCccceeCCCCCCccccccCCccccccHHHHhccc
Q 020075          123 EHIHFCDICGKGFKRDANLRMHMRAHGDEFKTPQALAKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVICVKNHF  202 (331)
Q Consensus       123 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~l~~H~  202 (331)
                      ||||+|+ ||+.|....+|..|+++|+|+                                                   
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~e---------------------------------------------------   28 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGL---------------------------------------------------   28 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCC---------------------------------------------------
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccc---------------------------------------------------
Confidence            5788884 888888888888888888877                                                   


Q ss_pred             ccccCCCCccCCCCCCCccCChhHhHHHhh-c
Q 020075          203 KRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-N  233 (331)
Q Consensus       203 ~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H  233 (331)
                            +||.|.+||+ +|...+.|..|++ |
T Consensus        29 ------kpy~C~~C~k-~F~~~~~L~~H~r~H   53 (53)
T d2csha1          29 ------RPYGCGVCGK-KFKMKHHLVGHMKIH   53 (53)
T ss_dssp             ------CSEECTTTSC-EESSSHHHHHHHTTT
T ss_pred             ------cCCcCCCcCC-EecCHHHHHHHHhcC
Confidence                  6777777887 7888888888877 5

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.9e-14  Score=84.42  Aligned_cols=35  Identities=31%  Similarity=0.530  Sum_probs=26.4

Q ss_pred             HHhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcCC
Q 020075          229 SHYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEGH  263 (331)
Q Consensus       229 ~H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e  263 (331)
                      +|++ |+++|||.|. |||+|.+.++|..|+++|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            4667 7777777777 777777777777777777775

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2e-13  Score=77.98  Aligned_cols=31  Identities=35%  Similarity=0.769  Sum_probs=28.5

Q ss_pred             ccCCCceecc-CCcccCCHHHHHHHHHhhcCC
Q 020075          233 NCGESRWKCS-CGTSFSRKDKLFGHVALFEGH  263 (331)
Q Consensus       233 H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e  263 (331)
                      |+|+|||.|. |||+|.+++.|..|+|+|+||
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            7899999999 999999999999999999986

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.3e-13  Score=80.22  Aligned_cols=35  Identities=31%  Similarity=0.617  Sum_probs=29.3

Q ss_pred             CCCceecc-CCcccCCHHHHHHHHH-hhcCCCCccCc
Q 020075          235 GESRWKCS-CGTSFSRKDKLFGHVA-LFEGHMPEVEV  269 (331)
Q Consensus       235 ~ekp~~C~-C~k~F~~~~~L~~H~~-~H~~e~p~~c~  269 (331)
                      .+|||+|. |||+|+++++|.+|++ +|+||+||.|.
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            46888888 8888888888888875 68888888885

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.7e-12  Score=76.08  Aligned_cols=31  Identities=29%  Similarity=0.592  Sum_probs=27.4

Q ss_pred             ccCCCceecc-CCcccCCHHHHHHHHHhhcCC
Q 020075          233 NCGESRWKCS-CGTSFSRKDKLFGHVALFEGH  263 (331)
Q Consensus       233 H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e  263 (331)
                      |+|+|||+|. |||+|++++.|..|+++|+++
T Consensus         3 HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           3 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             CCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            8899999999 999999999999999988765

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=1e-12  Score=77.59  Aligned_cols=33  Identities=30%  Similarity=0.468  Sum_probs=24.5

Q ss_pred             Hhh-ccCCCceecc-CCcccCCHHHHHHHHHhhcC
Q 020075          230 HYK-NCGESRWKCS-CGTSFSRKDKLFGHVALFEG  262 (331)
Q Consensus       230 H~~-H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~  262 (331)
                      |.| |+|||||+|. |+|+|+++++|.+|+++|.+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            566 7777777777 77777777777777777753

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.3e-12  Score=76.58  Aligned_cols=36  Identities=39%  Similarity=0.627  Sum_probs=34.7

Q ss_pred             cccccccCCCCccCCCCCCCccCChhHhHHHhh-ccCC
Q 020075          200 NHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYK-NCGE  236 (331)
Q Consensus       200 ~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~-H~~e  236 (331)
                      +|+++|+++|||.|++||| +|...++|..|++ |+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK-~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGK-SFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCC-BCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCc-eeeCHHHHHHhCccCCCC
Confidence            6899999999999999999 9999999999999 9997

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.6e-12  Score=74.14  Aligned_cols=33  Identities=36%  Similarity=0.463  Sum_probs=31.6

Q ss_pred             hhcCCCccccccchhhccCHHHHHHHHHHhcCC
Q 020075          119 ELLAEHIHFCDICGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       119 ~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      +|+|++||+|.+||++|...+.|..|+++|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            589999999999999999999999999999985

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=2.7e-12  Score=74.17  Aligned_cols=31  Identities=19%  Similarity=0.502  Sum_probs=27.1

Q ss_pred             ccCCCceecc-CCcccCCHHHHHHHHHhhcCC
Q 020075          233 NCGESRWKCS-CGTSFSRKDKLFGHVALFEGH  263 (331)
Q Consensus       233 H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~e  263 (331)
                      |+|+|||.|. |+|.|+++++|.+|+++|+.+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            6889999999 999999999999999998764

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.7e-12  Score=76.16  Aligned_cols=35  Identities=37%  Similarity=0.654  Sum_probs=32.1

Q ss_pred             CCCCccCCCCCCCccCChhHhHHHhh--ccCCCceecc
Q 020075          207 CPKMYSCDKCHKKSFSVVSDLRSHYK--NCGESRWKCS  242 (331)
Q Consensus       207 ~~k~~~C~~C~k~~f~~~~~L~~H~~--H~~ekp~~C~  242 (331)
                      .+|||+|.+||| .|..+++|..|++  |+|+|||.|+
T Consensus         2 ~~Kpy~C~~Cgk-~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           2 VGKPYICQSCGK-GFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SSCCEECSSSCC-EESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCCccCCCCCC-CcCChHHhhccCcCccCCCcCcCCc
Confidence            359999999999 9999999999975  9999999995

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=4.7e-12  Score=69.20  Aligned_cols=27  Identities=33%  Similarity=0.736  Sum_probs=24.4

Q ss_pred             CCceecc-CCcccCCHHHHHHHHHhhcC
Q 020075          236 ESRWKCS-CGTSFSRKDKLFGHVALFEG  262 (331)
Q Consensus       236 ekp~~C~-C~k~F~~~~~L~~H~~~H~~  262 (331)
                      ||||+|. |+|+|+++++|.+|+|+|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6899999 99999999999999999986

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.18  E-value=5.3e-12  Score=69.86  Aligned_cols=28  Identities=21%  Similarity=0.515  Sum_probs=22.7

Q ss_pred             Cceecc-CCcccCCHHHHHHHHHhhcCCC
Q 020075          237 SRWKCS-CGTSFSRKDKLFGHVALFEGHM  264 (331)
Q Consensus       237 kp~~C~-C~k~F~~~~~L~~H~~~H~~e~  264 (331)
                      |||.|. |+|+|++++.|.+|+++|+|||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            678888 8888888888888888888875

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=1.7e-12  Score=80.71  Aligned_cols=40  Identities=15%  Similarity=0.403  Sum_probs=32.3

Q ss_pred             hHhHHHhhccCCCceec--c-CCcccCCHHHHHHHHHhhcCCC
Q 020075          225 SDLRSHYKNCGESRWKC--S-CGTSFSRKDKLFGHVALFEGHM  264 (331)
Q Consensus       225 ~~L~~H~~H~~ekp~~C--~-C~k~F~~~~~L~~H~~~H~~e~  264 (331)
                      ..|..|++|+|+|||.|  + |+|+|+++++|..|+++|+|||
T Consensus         5 ~~l~~h~~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           5 GSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SSGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             chhcchhhccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            45666767888888888  5 8888888888888888888875

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=8e-12  Score=68.99  Aligned_cols=28  Identities=25%  Similarity=0.621  Sum_probs=22.9

Q ss_pred             Cceecc-CCcccCCHHHHHHHHHhhcCCC
Q 020075          237 SRWKCS-CGTSFSRKDKLFGHVALFEGHM  264 (331)
Q Consensus       237 kp~~C~-C~k~F~~~~~L~~H~~~H~~e~  264 (331)
                      |||.|. |||+|++++.|.+|+|+|+|||
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            678888 8888888888888888888875

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=7.5e-12  Score=73.26  Aligned_cols=34  Identities=26%  Similarity=0.419  Sum_probs=32.3

Q ss_pred             hhhcCCCccccccchhhccCHHHHHHHHHHhcCC
Q 020075          118 VELLAEHIHFCDICGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       118 ~~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      |+|+|++||+|.+||++|..+++|..|+++|+++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            5799999999999999999999999999999875

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.6e-11  Score=71.75  Aligned_cols=30  Identities=20%  Similarity=0.497  Sum_probs=23.9

Q ss_pred             ccCCCceecc-CCcccCCHHHHHHHHHhhcC
Q 020075          233 NCGESRWKCS-CGTSFSRKDKLFGHVALFEG  262 (331)
Q Consensus       233 H~~ekp~~C~-C~k~F~~~~~L~~H~~~H~~  262 (331)
                      |+|||||.|+ |+|+|+++++|.+|++.+++
T Consensus         3 HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           3 HSGEKPYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             cCCCCCEeCCCCcccccchHHHHHHcccccC
Confidence            7888888888 88888888888888765443

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=6.4e-12  Score=74.10  Aligned_cols=35  Identities=20%  Similarity=0.325  Sum_probs=33.3

Q ss_pred             hhhhhcCCCccccccchhhccCHHHHHHHHHHhcC
Q 020075          116 DAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGD  150 (331)
Q Consensus       116 h~~~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~  150 (331)
                      |.|+|+|+|||+|.+|+++|.++++|..|+++|.+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            78899999999999999999999999999999964

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=1.6e-11  Score=70.83  Aligned_cols=32  Identities=28%  Similarity=0.514  Sum_probs=30.5

Q ss_pred             hcCCCccccccchhhccCHHHHHHHHHHhcCC
Q 020075          120 LLAEHIHFCDICGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       120 h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      |+|+|||+|.+|++.|.++++|+.|+++|+..
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            68999999999999999999999999999875

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.07  E-value=1.8e-11  Score=66.83  Aligned_cols=28  Identities=32%  Similarity=0.697  Sum_probs=27.0

Q ss_pred             CCccccccchhhccCHHHHHHHHHHhcC
Q 020075          123 EHIHFCDICGKGFKRDANLRMHMRAHGD  150 (331)
Q Consensus       123 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~  150 (331)
                      ||||+|.+|++.|.++++|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6899999999999999999999999987

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5.1e-11  Score=63.32  Aligned_cols=25  Identities=32%  Similarity=0.773  Sum_probs=22.6

Q ss_pred             Cceecc-CCcccCCHHHHHHHHHhhc
Q 020075          237 SRWKCS-CGTSFSRKDKLFGHVALFE  261 (331)
Q Consensus       237 kp~~C~-C~k~F~~~~~L~~H~~~H~  261 (331)
                      |||+|. |||+|.+++.|.+|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            689999 9999999999999999985

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4.3e-11  Score=69.82  Aligned_cols=33  Identities=21%  Similarity=0.370  Sum_probs=29.8

Q ss_pred             hhhcCCCccccccchhhccCHHHHHHHHHHhcC
Q 020075          118 VELLAEHIHFCDICGKGFKRDANLRMHMRAHGD  150 (331)
Q Consensus       118 ~~h~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~  150 (331)
                      ++|+|++||+|++|++.|.++.+|+.|++.+++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccC
Confidence            579999999999999999999999999876554

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.1e-10  Score=67.95  Aligned_cols=31  Identities=29%  Similarity=0.529  Sum_probs=24.2

Q ss_pred             eecc---CCcccCCHHHHHHHHHhhcCCCCccCc
Q 020075          239 WKCS---CGTSFSRKDKLFGHVALFEGHMPEVEV  269 (331)
Q Consensus       239 ~~C~---C~k~F~~~~~L~~H~~~H~~e~p~~c~  269 (331)
                      |.|+   |+|+|.++..|++|+++|+|++||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            6674   888888888888888888888888775

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.97  E-value=1.5e-10  Score=63.85  Aligned_cols=28  Identities=25%  Similarity=0.784  Sum_probs=26.8

Q ss_pred             CCccCCCCCCCccCChhHhHHHhh-ccCCC
Q 020075          209 KMYSCDKCHKKSFSVVSDLRSHYK-NCGES  237 (331)
Q Consensus       209 k~~~C~~C~k~~f~~~~~L~~H~~-H~~ek  237 (331)
                      |||.|++|++ +|..++.|..|++ |+|||
T Consensus         1 kp~~C~~C~k-~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTR-AFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCC-CBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCC-CCCCchHcccccCcccCCC
Confidence            6899999999 9999999999999 99986

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.1e-10  Score=64.23  Aligned_cols=28  Identities=36%  Similarity=0.717  Sum_probs=22.2

Q ss_pred             Cceec--c-CCcccCCHHHHHHHHHhhcCCC
Q 020075          237 SRWKC--S-CGTSFSRKDKLFGHVALFEGHM  264 (331)
Q Consensus       237 kp~~C--~-C~k~F~~~~~L~~H~~~H~~e~  264 (331)
                      |||.|  + |+|+|++.++|.+|+++|+|||
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            57888  4 8888888888888888888775

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.7e-10  Score=63.22  Aligned_cols=27  Identities=33%  Similarity=0.706  Sum_probs=23.5

Q ss_pred             Cceecc---CCcccCCHHHHHHHHHhhcCC
Q 020075          237 SRWKCS---CGTSFSRKDKLFGHVALFEGH  263 (331)
Q Consensus       237 kp~~C~---C~k~F~~~~~L~~H~~~H~~e  263 (331)
                      |||.|+   |+|+|+++++|.+|+|+|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            688994   999999999999999999886

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.6e-10  Score=62.75  Aligned_cols=28  Identities=29%  Similarity=0.593  Sum_probs=26.8

Q ss_pred             CCccCCCCCCCccCChhHhHHHhh-ccCCC
Q 020075          209 KMYSCDKCHKKSFSVVSDLRSHYK-NCGES  237 (331)
Q Consensus       209 k~~~C~~C~k~~f~~~~~L~~H~~-H~~ek  237 (331)
                      |||.|++||| +|.++++|..|++ |+|+|
T Consensus         1 Kpy~C~~C~k-~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPK-RFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTC-CCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCC-eecchHHhhhhcCccCCcC
Confidence            6899999999 9999999999999 99986

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=4.1e-10  Score=62.35  Aligned_cols=27  Identities=33%  Similarity=0.646  Sum_probs=20.6

Q ss_pred             Cceecc---CCcccCCHHHHHHHHHhhcCC
Q 020075          237 SRWKCS---CGTSFSRKDKLFGHVALFEGH  263 (331)
Q Consensus       237 kp~~C~---C~k~F~~~~~L~~H~~~H~~e  263 (331)
                      |||.|.   |+|+|.++++|.+|+|+|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            577774   888888888888888877775

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=2.1e-10  Score=71.09  Aligned_cols=38  Identities=24%  Similarity=0.439  Sum_probs=34.6

Q ss_pred             HhcccccccCCCCccCCC--CCCCccCChhHhHHHhh-ccCCC
Q 020075          198 VKNHFKRSHCPKMYSCDK--CHKKSFSVVSDLRSHYK-NCGES  237 (331)
Q Consensus       198 l~~H~~~h~~~k~~~C~~--C~k~~f~~~~~L~~H~~-H~~ek  237 (331)
                      +.+|++ |++++||.|.+  |+| .|..+++|..|++ |+|+|
T Consensus         7 l~~h~~-h~gekpy~C~~~~C~k-~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           7 IDKYVK-EMPDKTFECLFPGCTK-TFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSCE-EETTTEEECCCTTCCC-EECSSSSHHHHHHHHTTTC
T ss_pred             hcchhh-ccCCCCeECCcCCCCc-cccCchHHHhhcccccCCC
Confidence            466775 99999999987  999 9999999999999 99986

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=4.4e-10  Score=65.28  Aligned_cols=31  Identities=32%  Similarity=0.774  Sum_probs=28.1

Q ss_pred             ccCCC--CCCCccCChhHhHHHhh-ccCCCceecc
Q 020075          211 YSCDK--CHKKSFSVVSDLRSHYK-NCGESRWKCS  242 (331)
Q Consensus       211 ~~C~~--C~k~~f~~~~~L~~H~~-H~~ekp~~C~  242 (331)
                      |.|+.  |++ .|.+++.|++|++ |+|+|||.|+
T Consensus         2 f~C~~~~C~k-~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGK-SFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCC-EESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCC-eeCChhHhccccCeeCCCCCEeCC
Confidence            67865  999 9999999999999 9999999995

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=4.2e-10  Score=59.70  Aligned_cols=26  Identities=35%  Similarity=0.572  Sum_probs=25.0

Q ss_pred             CccccccchhhccCHHHHHHHHHHhc
Q 020075          124 HIHFCDICGKGFKRDANLRMHMRAHG  149 (331)
Q Consensus       124 ~~~~C~~C~k~F~~~~~L~~H~~~H~  149 (331)
                      |||+|..|||.|...+.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            69999999999999999999999995

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=8.2e-10  Score=61.11  Aligned_cols=28  Identities=39%  Similarity=0.789  Sum_probs=26.8

Q ss_pred             Ccccccc--chhhccCHHHHHHHHHHhcCC
Q 020075          124 HIHFCDI--CGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       124 ~~~~C~~--C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      |||+|++  ||+.|.+.++|+.|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            6999999  999999999999999999985

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=7.2e-10  Score=61.46  Aligned_cols=28  Identities=43%  Similarity=0.792  Sum_probs=26.6

Q ss_pred             Ccccccc--chhhccCHHHHHHHHHHhcCC
Q 020075          124 HIHFCDI--CGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       124 ~~~~C~~--C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      |||+|++  ||++|.+.++|+.|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6999988  999999999999999999985

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=2.7e-09  Score=58.43  Aligned_cols=26  Identities=31%  Similarity=0.749  Sum_probs=21.7

Q ss_pred             Cceecc---CCcccCCHHHHHHHHHhhcC
Q 020075          237 SRWKCS---CGTSFSRKDKLFGHVALFEG  262 (331)
Q Consensus       237 kp~~C~---C~k~F~~~~~L~~H~~~H~~  262 (331)
                      |||.|.   |+|+|++.+.|.+|+|+|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            688884   88888888888888888876

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=6.3e-09  Score=58.36  Aligned_cols=28  Identities=21%  Similarity=0.598  Sum_probs=20.8

Q ss_pred             CCceecc---CCcccCCHHHHHHHHHhhcCC
Q 020075          236 ESRWKCS---CGTSFSRKDKLFGHVALFEGH  263 (331)
Q Consensus       236 ekp~~C~---C~k~F~~~~~L~~H~~~H~~e  263 (331)
                      ||||.|.   |+|+|++.++|.+|+++|+.+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            5777774   888888888888887777643

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=6.3e-09  Score=56.28  Aligned_cols=25  Identities=20%  Similarity=0.579  Sum_probs=19.1

Q ss_pred             Cceecc---CCcccCCHHHHHHHHHhhc
Q 020075          237 SRWKCS---CGTSFSRKDKLFGHVALFE  261 (331)
Q Consensus       237 kp~~C~---C~k~F~~~~~L~~H~~~H~  261 (331)
                      |||.|+   |+|+|++.++|++|+|+|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            577774   8888888888888887775

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.8e-08  Score=56.12  Aligned_cols=28  Identities=29%  Similarity=0.692  Sum_probs=25.6

Q ss_pred             CCccCC--CCCCCccCChhHhHHHhh-ccCCC
Q 020075          209 KMYSCD--KCHKKSFSVVSDLRSHYK-NCGES  237 (331)
Q Consensus       209 k~~~C~--~C~k~~f~~~~~L~~H~~-H~~ek  237 (331)
                      |||.|+  .|+| +|.+.++|..|++ |+|+|
T Consensus         1 kpf~C~~~~C~k-~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGK-RFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCC-BCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCc-CcCChhHhhhhcCcccccC
Confidence            689995  5999 9999999999999 99986

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=7.2e-09  Score=56.69  Aligned_cols=27  Identities=33%  Similarity=0.705  Sum_probs=25.8

Q ss_pred             Ccccccc--chhhccCHHHHHHHHHHhcC
Q 020075          124 HIHFCDI--CGKGFKRDANLRMHMRAHGD  150 (331)
Q Consensus       124 ~~~~C~~--C~k~F~~~~~L~~H~~~H~~  150 (331)
                      |||+|.+  |+|.|.+.++|.+|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6999988  99999999999999999986

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.8e-08  Score=50.65  Aligned_cols=25  Identities=52%  Similarity=0.906  Sum_probs=16.5

Q ss_pred             ceecc-CCcccCCHHHHHHHHHhhcC
Q 020075          238 RWKCS-CGTSFSRKDKLFGHVALFEG  262 (331)
Q Consensus       238 p~~C~-C~k~F~~~~~L~~H~~~H~~  262 (331)
                      |++|+ |+|.|+++..|..|+|.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            45666 66666666666666666654

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.50  E-value=1.9e-08  Score=56.38  Aligned_cols=29  Identities=31%  Similarity=0.642  Sum_probs=27.1

Q ss_pred             CCcccccc--chhhccCHHHHHHHHHHhcCC
Q 020075          123 EHIHFCDI--CGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       123 ~~~~~C~~--C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      |+||.|.+  ||+.|++..+|++|+++|+..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            68999998  999999999999999999863

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.8e-08  Score=50.60  Aligned_cols=26  Identities=46%  Similarity=0.975  Sum_probs=24.7

Q ss_pred             ccccccchhhccCHHHHHHHHHHhcC
Q 020075          125 IHFCDICGKGFKRDANLRMHMRAHGD  150 (331)
Q Consensus       125 ~~~C~~C~k~F~~~~~L~~H~~~H~~  150 (331)
                      |++|+.|+|-|+++..|+.|||.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            68999999999999999999999986

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2e-08  Score=54.23  Aligned_cols=26  Identities=31%  Similarity=0.685  Sum_probs=24.8

Q ss_pred             Ccccccc--chhhccCHHHHHHHHHHhc
Q 020075          124 HIHFCDI--CGKGFKRDANLRMHMRAHG  149 (331)
Q Consensus       124 ~~~~C~~--C~k~F~~~~~L~~H~~~H~  149 (331)
                      +||+|++  |||+|++.++|++|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6999998  9999999999999999996

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=1.2e-07  Score=49.16  Aligned_cols=26  Identities=31%  Similarity=0.690  Sum_probs=21.6

Q ss_pred             CCceecc-CCcccCCHHHHHHHHHhhc
Q 020075          236 ESRWKCS-CGTSFSRKDKLFGHVALFE  261 (331)
Q Consensus       236 ekp~~C~-C~k~F~~~~~L~~H~~~H~  261 (331)
                      ||||.|. ||+.|++....++|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            5788888 8888888888888888874

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.3e-07  Score=50.98  Aligned_cols=29  Identities=28%  Similarity=0.469  Sum_probs=16.6

Q ss_pred             ceecc-CCcccCCHHHHHHHHHhhcCCCCc
Q 020075          238 RWKCS-CGTSFSRKDKLFGHVALFEGHMPE  266 (331)
Q Consensus       238 p~~C~-C~k~F~~~~~L~~H~~~H~~e~p~  266 (331)
                      ...|. |||.|.....|.+|...|++|+||
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            34555 555555555555555555555555

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.18  E-value=2.6e-07  Score=47.96  Aligned_cols=27  Identities=37%  Similarity=0.731  Sum_probs=25.4

Q ss_pred             CCccccccchhhccCHHHHHHHHHHhc
Q 020075          123 EHIHFCDICGKGFKRDANLRMHMRAHG  149 (331)
Q Consensus       123 ~~~~~C~~C~k~F~~~~~L~~H~~~H~  149 (331)
                      ++||.|.+||+.|.+....++|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            689999999999999999999999984

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=4.3e-07  Score=47.77  Aligned_cols=29  Identities=34%  Similarity=0.725  Sum_probs=27.4

Q ss_pred             CCccccccchhhccCHHHHHHHHHHhcCC
Q 020075          123 EHIHFCDICGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       123 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      ++||.|++|+..|.++..+.-|.+.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            58999999999999999999999999875

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=6.3e-07  Score=46.08  Aligned_cols=27  Identities=26%  Similarity=0.488  Sum_probs=16.3

Q ss_pred             CCceecc-CCcccCCHHHHHHHHHhhcC
Q 020075          236 ESRWKCS-CGTSFSRKDKLFGHVALFEG  262 (331)
Q Consensus       236 ekp~~C~-C~k~F~~~~~L~~H~~~H~~  262 (331)
                      ++||+|. |...-...+.|..|+|.|+|
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            3566666 66666666666666666655

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=4.8e-07  Score=48.76  Aligned_cols=31  Identities=32%  Similarity=0.564  Sum_probs=28.1

Q ss_pred             CCccCCCCCCCccCChhHhHHHhh-ccCCCcee
Q 020075          209 KMYSCDKCHKKSFSVVSDLRSHYK-NCGESRWK  240 (331)
Q Consensus       209 k~~~C~~C~k~~f~~~~~L~~H~~-H~~ekp~~  240 (331)
                      |...|+.||| .|.....|.+|.. |++||||.
T Consensus         4 k~~~ce~cgk-~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           4 KQVACEICGK-IFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CSEEETTTTE-EESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhhhHHHHHH-HHHHHHHHHhhhcccCCCCCCC
Confidence            5678999999 9999999999999 99999984

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=9.4e-07  Score=46.48  Aligned_cols=28  Identities=39%  Similarity=0.828  Sum_probs=23.4

Q ss_pred             CCceecc-CCcccCCHHHHHHHHHhhcCC
Q 020075          236 ESRWKCS-CGTSFSRKDKLFGHVALFEGH  263 (331)
Q Consensus       236 ekp~~C~-C~k~F~~~~~L~~H~~~H~~e  263 (331)
                      ||||.|+ |+..|.++..+..|.|.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            5788888 888888888888888888764

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.5e-06  Score=45.68  Aligned_cols=26  Identities=23%  Similarity=0.569  Sum_probs=21.7

Q ss_pred             Cceecc---CCcccCCHHHHHHHHHhhcC
Q 020075          237 SRWKCS---CGTSFSRKDKLFGHVALFEG  262 (331)
Q Consensus       237 kp~~C~---C~k~F~~~~~L~~H~~~H~~  262 (331)
                      |||.|.   |+|++...++|++|++.++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            688885   88899999999999887664

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.2e-06  Score=44.84  Aligned_cols=25  Identities=32%  Similarity=0.683  Sum_probs=16.9

Q ss_pred             eecc-CCcccCCHHHHHHHHHhhcCC
Q 020075          239 WKCS-CGTSFSRKDKLFGHVALFEGH  263 (331)
Q Consensus       239 ~~C~-C~k~F~~~~~L~~H~~~H~~e  263 (331)
                      +.|. |||+|...+.|++|+.+|+||
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            4566 777777777777777666664

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.7e-06  Score=44.39  Aligned_cols=28  Identities=21%  Similarity=0.514  Sum_probs=25.7

Q ss_pred             CCCccCCCCCCCccCChhHhHHHhh-ccCC
Q 020075          208 PKMYSCDKCHKKSFSVVSDLRSHYK-NCGE  236 (331)
Q Consensus       208 ~k~~~C~~C~k~~f~~~~~L~~H~~-H~~e  236 (331)
                      ++||+|..|.. .-...+.|..|++ |+|+
T Consensus         1 erpfkcqlcsy-~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPY-ASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSC-EESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeeccc-ccCCchheEEeeecccCc
Confidence            48999999999 8999999999999 9984

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=5.4e-06  Score=42.78  Aligned_cols=26  Identities=19%  Similarity=0.424  Sum_probs=17.7

Q ss_pred             eecc-CCcccCCHHHHHHHHHhhcCCC
Q 020075          239 WKCS-CGTSFSRKDKLFGHVALFEGHM  264 (331)
Q Consensus       239 ~~C~-C~k~F~~~~~L~~H~~~H~~e~  264 (331)
                      |.|. ||......+-|..|+|+|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            6666 7777777777777777776653

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=2.3e-06  Score=43.74  Aligned_cols=27  Identities=37%  Similarity=0.791  Sum_probs=25.0

Q ss_pred             ccccccchhhccCHHHHHHHHHHhcCC
Q 020075          125 IHFCDICGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       125 ~~~C~~C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      .+.|..|||.|...+.|++|..+|+|+
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            478999999999999999999999985

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=9.3e-06  Score=40.80  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=12.8

Q ss_pred             cc-CCcccCCHHHHHHHHHhhcCC
Q 020075          241 CS-CGTSFSRKDKLFGHVALFEGH  263 (331)
Q Consensus       241 C~-C~k~F~~~~~L~~H~~~H~~e  263 (331)
                      |+ |.|.|.++..|+.|-|.|+||
T Consensus         3 cp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           3 CPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             CcchHHHHHHhHhhhhccccccCC
Confidence            55 555555555555555555554

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.76  E-value=8.9e-06  Score=41.84  Aligned_cols=24  Identities=25%  Similarity=0.562  Sum_probs=21.8

Q ss_pred             Cceecc---CCcccCCHHHHHHHHHhh
Q 020075          237 SRWKCS---CGTSFSRKDKLFGHVALF  260 (331)
Q Consensus       237 kp~~C~---C~k~F~~~~~L~~H~~~H  260 (331)
                      .||+|+   |+|.|+..+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            589996   999999999999999988

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1.7e-05  Score=40.32  Aligned_cols=25  Identities=20%  Similarity=0.507  Sum_probs=20.0

Q ss_pred             Cceecc-CCcccCCHHHHHHHHHhhc
Q 020075          237 SRWKCS-CGTSFSRKDKLFGHVALFE  261 (331)
Q Consensus       237 kp~~C~-C~k~F~~~~~L~~H~~~H~  261 (331)
                      |||+|. |...-...++|+.|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            678888 8888888888888888774

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1.7e-05  Score=40.92  Aligned_cols=26  Identities=23%  Similarity=0.465  Sum_probs=24.0

Q ss_pred             ccCCCCCCCccCChhHhHHHhh-ccCCC
Q 020075          211 YSCDKCHKKSFSVVSDLRSHYK-NCGES  237 (331)
Q Consensus       211 ~~C~~C~k~~f~~~~~L~~H~~-H~~ek  237 (331)
                      |.|++||. .....+-|+.|+| |++++
T Consensus         2 YvC~~Cg~-~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGI-RAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCC-BCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCc-ccCCHHHHHHHHHHhcCCC
Confidence            88999999 8999999999999 99875

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.65  E-value=1.5e-05  Score=39.99  Aligned_cols=25  Identities=36%  Similarity=0.712  Sum_probs=23.4

Q ss_pred             cCCCCCCCccCChhHhHHHhh-ccCCC
Q 020075          212 SCDKCHKKSFSVVSDLRSHYK-NCGES  237 (331)
Q Consensus       212 ~C~~C~k~~f~~~~~L~~H~~-H~~ek  237 (331)
                      .|+.|.| .|.++..|+.|-| |+|+|
T Consensus         2 qcp~c~k-~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHK-KFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCC-CCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHH-HHHHhHhhhhccccccCCC
Confidence            6999999 9999999999999 99986

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=1.7e-05  Score=45.14  Aligned_cols=26  Identities=27%  Similarity=0.673  Sum_probs=23.5

Q ss_pred             cCCCceecc-CCcccCCHHHHHHHHHh
Q 020075          234 CGESRWKCS-CGTSFSRKDKLFGHVAL  259 (331)
Q Consensus       234 ~~ekp~~C~-C~k~F~~~~~L~~H~~~  259 (331)
                      +|-|||.|. |+|.|..+.++.+|...
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            578999999 99999999999999753

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.60  E-value=1.5e-05  Score=39.40  Aligned_cols=23  Identities=35%  Similarity=0.704  Sum_probs=15.9

Q ss_pred             eecc-CCcccCCHHHHHHHHHhhc
Q 020075          239 WKCS-CGTSFSRKDKLFGHVALFE  261 (331)
Q Consensus       239 ~~C~-C~k~F~~~~~L~~H~~~H~  261 (331)
                      |+|- |.++|..++.|.+|+|+|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            5677 7777777777777777663

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.59  E-value=2.3e-05  Score=44.30  Aligned_cols=28  Identities=25%  Similarity=0.561  Sum_probs=24.3

Q ss_pred             Cceecc-CCcccCCHHHHHHHHHhhcCCC
Q 020075          237 SRWKCS-CGTSFSRKDKLFGHVALFEGHM  264 (331)
Q Consensus       237 kp~~C~-C~k~F~~~~~L~~H~~~H~~e~  264 (331)
                      +.|.|. |+|.|.+..+|-.|++.|..++
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CccCCCCCCCccCCcccccchHhhhcchH
Confidence            569999 9999999999999999997655

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.59  E-value=1.7e-05  Score=40.95  Aligned_cols=27  Identities=22%  Similarity=0.523  Sum_probs=23.4

Q ss_pred             Cceecc---CCcccCCHHHHHHHHHhhcCC
Q 020075          237 SRWKCS---CGTSFSRKDKLFGHVALFEGH  263 (331)
Q Consensus       237 kp~~C~---C~k~F~~~~~L~~H~~~H~~e  263 (331)
                      |||.|.   |.|.|.+...|.+|..+|+||
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            688885   999999999999999999875

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=1.5e-05  Score=41.84  Aligned_cols=27  Identities=22%  Similarity=0.549  Sum_probs=24.7

Q ss_pred             Ccccccc--chhhccCHHHHHHHHHHhcC
Q 020075          124 HIHFCDI--CGKGFKRDANLRMHMRAHGD  150 (331)
Q Consensus       124 ~~~~C~~--C~k~F~~~~~L~~H~~~H~~  150 (331)
                      +||.|.+  |+|+++..+.|+.|++.++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            6899998  99999999999999998765

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=4.3e-05  Score=39.55  Aligned_cols=23  Identities=35%  Similarity=0.649  Sum_probs=13.7

Q ss_pred             CCccCCCCCCCccCChhHhHHHhh
Q 020075          209 KMYSCDKCHKKSFSVVSDLRSHYK  232 (331)
Q Consensus       209 k~~~C~~C~k~~f~~~~~L~~H~~  232 (331)
                      |||.|.+|.. .....++|+.|++
T Consensus         1 kpy~cqyc~y-rsadssnlkthik   23 (30)
T d1klra_           1 KTYQCQYCEF-RSADSSNLKTHIK   23 (30)
T ss_dssp             CCCCCSSSSC-CCSCSHHHHHHHH
T ss_pred             CCcccccccc-ccccchhhhhhhh
Confidence            3566666665 5556666666665

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=2.4e-05  Score=41.40  Aligned_cols=26  Identities=19%  Similarity=0.441  Sum_probs=19.8

Q ss_pred             Cceecc---CCcccCCHHHHHHHH-HhhcC
Q 020075          237 SRWKCS---CGTSFSRKDKLFGHV-ALFEG  262 (331)
Q Consensus       237 kp~~C~---C~k~F~~~~~L~~H~-~~H~~  262 (331)
                      |||.|.   |.|+|+..+.-..|+ |+|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            578885   888888888888886 77754

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.26  E-value=8.8e-05  Score=38.09  Aligned_cols=29  Identities=38%  Similarity=0.863  Sum_probs=26.9

Q ss_pred             CCccccccchhhccCHHHHHHHHHHhcCC
Q 020075          123 EHIHFCDICGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       123 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      +..|.|..|...|.+.-.|+.||-.|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            56799999999999999999999999985

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=0.00015  Score=37.25  Aligned_cols=28  Identities=32%  Similarity=0.623  Sum_probs=20.1

Q ss_pred             CCceecc-CCcccCCHHHHHHHHHhhcCC
Q 020075          236 ESRWKCS-CGTSFSRKDKLFGHVALFEGH  263 (331)
Q Consensus       236 ekp~~C~-C~k~F~~~~~L~~H~~~H~~e  263 (331)
                      +.-|.|. |...|.++-.|+-||-.|+||
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            3457777 777777777777777777764

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00011  Score=37.91  Aligned_cols=27  Identities=15%  Similarity=0.388  Sum_probs=23.8

Q ss_pred             Cceecc-CCcccCCHHHHHHHHHh-hcCC
Q 020075          237 SRWKCS-CGTSFSRKDKLFGHVAL-FEGH  263 (331)
Q Consensus       237 kp~~C~-C~k~F~~~~~L~~H~~~-H~~e  263 (331)
                      |||.|. |...-...++|+.|+++ |..|
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccccccccchhhhhhhhcccccC
Confidence            699999 99999999999999998 4433

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.18  E-value=9.4e-05  Score=37.93  Aligned_cols=26  Identities=27%  Similarity=0.459  Sum_probs=23.6

Q ss_pred             Ccccccc--chhhccCHHHHHHHHHHhc
Q 020075          124 HIHFCDI--CGKGFKRDANLRMHMRAHG  149 (331)
Q Consensus       124 ~~~~C~~--C~k~F~~~~~L~~H~~~H~  149 (331)
                      .||+|+.  |++.|...+.|++|.++|.
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvha   29 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVHA   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhccC
Confidence            4899987  9999999999999999883

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00011  Score=37.18  Aligned_cols=25  Identities=28%  Similarity=0.583  Sum_probs=23.4

Q ss_pred             CCccCCCCCCCccCChhHhHHHhh-cc
Q 020075          209 KMYSCDKCHKKSFSVVSDLRSHYK-NC  234 (331)
Q Consensus       209 k~~~C~~C~k~~f~~~~~L~~H~~-H~  234 (331)
                      |||+|..|+. .-...+.|..|+| |.
T Consensus         2 kp~kck~cdy-aaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDY-AAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCC-EESSHHHHHHHHHHSC
T ss_pred             CCcccccccc-hhcchhhHhhhhhccc
Confidence            7999999999 9999999999999 85

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.06  E-value=0.00023  Score=35.04  Aligned_cols=23  Identities=35%  Similarity=0.689  Sum_probs=21.3

Q ss_pred             ccCCCCCCCccCChhHhHHHhh-cc
Q 020075          211 YSCDKCHKKSFSVVSDLRSHYK-NC  234 (331)
Q Consensus       211 ~~C~~C~k~~f~~~~~L~~H~~-H~  234 (331)
                      |+|..|.+ +|..++.|.+|++ |.
T Consensus         1 ykcglcer-sfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCER-SFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCC-BCSSHHHHHHHGGGTC
T ss_pred             CcccchHH-HHHHHHHHHHHHHhhc
Confidence            78999999 9999999999999 75

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00025  Score=36.42  Aligned_cols=22  Identities=32%  Similarity=0.690  Sum_probs=15.5

Q ss_pred             ceecc-CCcccCCHHHHHHHHHh
Q 020075          238 RWKCS-CGTSFSRKDKLFGHVAL  259 (331)
Q Consensus       238 p~~C~-C~k~F~~~~~L~~H~~~  259 (331)
                      ||.|. |..+|.++.+|..||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            56777 77777777777777764

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.99  E-value=0.00011  Score=37.89  Aligned_cols=28  Identities=32%  Similarity=0.488  Sum_probs=25.4

Q ss_pred             Ccccccc--chhhccCHHHHHHHHHHhcCC
Q 020075          124 HIHFCDI--CGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       124 ~~~~C~~--C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      +||.|..  |.|.|.+...|.+|..+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            5888976  999999999999999999985

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00031  Score=39.26  Aligned_cols=27  Identities=30%  Similarity=0.641  Sum_probs=23.0

Q ss_pred             CCCceec--c-CCcccCCHHHHHHHHHhhc
Q 020075          235 GESRWKC--S-CGTSFSRKDKLFGHVALFE  261 (331)
Q Consensus       235 ~ekp~~C--~-C~k~F~~~~~L~~H~~~H~  261 (331)
                      .+|||.|  + |+.+|.+-..|..|.+.|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            4789999  4 9999999999999988885

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.94  E-value=0.00019  Score=40.44  Aligned_cols=29  Identities=24%  Similarity=0.524  Sum_probs=26.5

Q ss_pred             CCccccccchhhccCHHHHHHHHHHhcCC
Q 020075          123 EHIHFCDICGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       123 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      .+.|+|.+|++.|.+...|--||+.|..+
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~   31 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRD   31 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCS
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcch
Confidence            46799999999999999999999999765

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00019  Score=36.91  Aligned_cols=23  Identities=35%  Similarity=0.670  Sum_probs=21.9

Q ss_pred             ccccccchhhccCHHHHHHHHHH
Q 020075          125 IHFCDICGKGFKRDANLRMHMRA  147 (331)
Q Consensus       125 ~~~C~~C~k~F~~~~~L~~H~~~  147 (331)
                      ||.|..|...|.++.+|..||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            79999999999999999999985

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00027  Score=40.02  Aligned_cols=25  Identities=28%  Similarity=0.519  Sum_probs=22.7

Q ss_pred             CCCCccCCCCCCCccCChhHhHHHhh
Q 020075          207 CPKMYSCDKCHKKSFSVVSDLRSHYK  232 (331)
Q Consensus       207 ~~k~~~C~~C~k~~f~~~~~L~~H~~  232 (331)
                      |-|||.|.+|+| .|.++..+.+|..
T Consensus         2 GiKPYeC~~C~K-rFMWRDSF~RH~~   26 (44)
T d2csha2           2 GIKPYECNICAK-RFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCEECSSSCC-EESCHHHHHHHHH
T ss_pred             CCCceeccchhh-hhhhHHHHHHhhh
Confidence            459999999999 9999999999975

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.83  E-value=0.00031  Score=37.06  Aligned_cols=22  Identities=32%  Similarity=0.812  Sum_probs=15.5

Q ss_pred             ceecc-CCcccCCHHHHHHHHHh
Q 020075          238 RWKCS-CGTSFSRKDKLFGHVAL  259 (331)
Q Consensus       238 p~~C~-C~k~F~~~~~L~~H~~~  259 (331)
                      ||.|. |++.|+++.-|.+|+..
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qK   23 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQK   23 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTT
T ss_pred             CcccccccchhhHHHHHHHHHHH
Confidence            57777 77777777777777643

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.0005  Score=35.38  Aligned_cols=26  Identities=27%  Similarity=0.611  Sum_probs=17.7

Q ss_pred             Cceecc-CCcccCCHHHHHHHHHhhcC
Q 020075          237 SRWKCS-CGTSFSRKDKLFGHVALFEG  262 (331)
Q Consensus       237 kp~~C~-C~k~F~~~~~L~~H~~~H~~  262 (331)
                      +||+|. |.---.+.++|..|++.-+|
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            467777 77777777777777765443

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.63  E-value=0.00056  Score=36.02  Aligned_cols=25  Identities=28%  Similarity=0.632  Sum_probs=22.7

Q ss_pred             CccCCCCCCCccCChhHhHHHhh--ccC
Q 020075          210 MYSCDKCHKKSFSVVSDLRSHYK--NCG  235 (331)
Q Consensus       210 ~~~C~~C~k~~f~~~~~L~~H~~--H~~  235 (331)
                      ||.|.+|++ .|+++..|.+|..  |.|
T Consensus         1 Pf~C~~C~R-~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNR-AFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCC-EESSHHHHHHHHTTTSCC
T ss_pred             Ccccccccc-hhhHHHHHHHHHHHHhcC
Confidence            799999999 9999999999987  765

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.60  E-value=0.00069  Score=33.26  Aligned_cols=22  Identities=36%  Similarity=0.758  Sum_probs=19.2

Q ss_pred             ceecc-CCcccCCHHHHHHHHHh
Q 020075          238 RWKCS-CGTSFSRKDKLFGHVAL  259 (331)
Q Consensus       238 p~~C~-C~k~F~~~~~L~~H~~~  259 (331)
                      ||+|. |...|..+..|..|+-.
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            79999 99999999999999753

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.00061  Score=37.22  Aligned_cols=19  Identities=21%  Similarity=0.289  Sum_probs=15.0

Q ss_pred             cccCCHHHHHHHHHhhcCC
Q 020075          245 TSFSRKDKLFGHVALFEGH  263 (331)
Q Consensus       245 k~F~~~~~L~~H~~~H~~e  263 (331)
                      +.|..+..|..|+|+|+||
T Consensus        15 ~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          15 RPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCSSHHHHHHHTHHHHCC
T ss_pred             CcchhHHHHHHHHhhcCCC
Confidence            4588888888888888876

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.31  E-value=0.0014  Score=32.93  Aligned_cols=22  Identities=36%  Similarity=0.868  Sum_probs=16.8

Q ss_pred             ceecc-CCcccCCHHHHHHHHHh
Q 020075          238 RWKCS-CGTSFSRKDKLFGHVAL  259 (331)
Q Consensus       238 p~~C~-C~k~F~~~~~L~~H~~~  259 (331)
                      ||+|. |||.|.++.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            67788 88888888888877653

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0011  Score=37.03  Aligned_cols=28  Identities=25%  Similarity=0.686  Sum_probs=25.3

Q ss_pred             CCCcccccc--chhhccCHHHHHHHHHHhc
Q 020075          122 AEHIHFCDI--CGKGFKRDANLRMHMRAHG  149 (331)
Q Consensus       122 ~~~~~~C~~--C~k~F~~~~~L~~H~~~H~  149 (331)
                      .+|||.|..  |+.+|.+...|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            489999955  9999999999999999885

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.06  E-value=0.0023  Score=33.37  Aligned_cols=27  Identities=33%  Similarity=0.781  Sum_probs=23.1

Q ss_pred             Cceecc---CCcccCCHHHHHHHHHhhcCC
Q 020075          237 SRWKCS---CGTSFSRKDKLFGHVALFEGH  263 (331)
Q Consensus       237 kp~~C~---C~k~F~~~~~L~~H~~~H~~e  263 (331)
                      |.|.|+   |+..|.....|..|+-.|+||
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            568885   999999999999999888886

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0012  Score=34.70  Aligned_cols=27  Identities=41%  Similarity=0.755  Sum_probs=22.4

Q ss_pred             CCccCCC--CCCCccCChhHhHHHh-h-ccCC
Q 020075          209 KMYSCDK--CHKKSFSVVSDLRSHY-K-NCGE  236 (331)
Q Consensus       209 k~~~C~~--C~k~~f~~~~~L~~H~-~-H~~e  236 (331)
                      |||.|.+  |.| .|+..+....|+ | |..+
T Consensus         1 kPY~C~~~gC~K-afsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           1 KPYMCEHEGCSK-AFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             CCEECCSTTCCC-EESSSSTTHHHHHHTTCSC
T ss_pred             CCccccCCChhh-hhcchhhhhhhccccccCC
Confidence            5888866  999 999999999997 6 7653

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.05  E-value=0.0012  Score=32.39  Aligned_cols=23  Identities=26%  Similarity=0.502  Sum_probs=21.3

Q ss_pred             CccccccchhhccCHHHHHHHHH
Q 020075          124 HIHFCDICGKGFKRDANLRMHMR  146 (331)
Q Consensus       124 ~~~~C~~C~k~F~~~~~L~~H~~  146 (331)
                      .||+|.-|...|..+..|..||.
T Consensus         1 mpykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           1 MPYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHHH
Confidence            38999999999999999999985

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0016  Score=33.45  Aligned_cols=27  Identities=26%  Similarity=0.453  Sum_probs=23.8

Q ss_pred             CccccccchhhccCHHHHHHHHHHhcC
Q 020075          124 HIHFCDICGKGFKRDANLRMHMRAHGD  150 (331)
Q Consensus       124 ~~~~C~~C~k~F~~~~~L~~H~~~H~~  150 (331)
                      +||+|..|..--.+.++|..|++.-++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            589999999999999999999986554

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.003  Score=31.93  Aligned_cols=24  Identities=38%  Similarity=0.378  Sum_probs=17.9

Q ss_pred             ceecc-CCcccCCHHHHHHHHHhhc
Q 020075          238 RWKCS-CGTSFSRKDKLFGHVALFE  261 (331)
Q Consensus       238 p~~C~-C~k~F~~~~~L~~H~~~H~  261 (331)
                      |-+|+ |..+.+.+..|+.|.|+|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            45677 7777777777777777774

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0032  Score=33.86  Aligned_cols=25  Identities=32%  Similarity=0.813  Sum_probs=21.0

Q ss_pred             ceecc-CCcccCCHHHHHHHHHhhcC
Q 020075          238 RWKCS-CGTSFSRKDKLFGHVALFEG  262 (331)
Q Consensus       238 p~~C~-C~k~F~~~~~L~~H~~~H~~  262 (331)
                      .|.|. |||.|.++..+.+|....+|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            58999 99999999999999776543

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.77  E-value=0.0033  Score=31.57  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=20.1

Q ss_pred             CccCCCCCCCccCChhHhHHHhh
Q 020075          210 MYSCDKCHKKSFSVVSDLRSHYK  232 (331)
Q Consensus       210 ~~~C~~C~k~~f~~~~~L~~H~~  232 (331)
                      ||+|..||| .+.++.+|..|..
T Consensus         1 pf~c~kcgk-cyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGK-CYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCC-BCSSHHHHHHHHH
T ss_pred             CCccccchh-hhhhHhHHHHHHH
Confidence            799999999 8999999999975

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.65  E-value=0.0041  Score=31.09  Aligned_cols=23  Identities=26%  Similarity=0.644  Sum_probs=20.0

Q ss_pred             eecc---CCcccCCHHHHHHHHHhhc
Q 020075          239 WKCS---CGTSFSRKDKLFGHVALFE  261 (331)
Q Consensus       239 ~~C~---C~k~F~~~~~L~~H~~~H~  261 (331)
                      |.|.   |+|.|.....|+.|+-+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            7784   9999999999999998886

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.0054  Score=30.85  Aligned_cols=21  Identities=29%  Similarity=0.687  Sum_probs=10.1

Q ss_pred             ccCCCCCCCccCChhHhHHHhh
Q 020075          211 YSCDKCHKKSFSVVSDLRSHYK  232 (331)
Q Consensus       211 ~~C~~C~k~~f~~~~~L~~H~~  232 (331)
                      |.|+.|+- ...+++.|+.|++
T Consensus         3 ~qcphc~t-iiarksdlrvhlr   23 (28)
T d2ct1a1           3 FHCPHCDT-VIARKSDLGVHLR   23 (28)
T ss_dssp             EECSSSSC-EESSHHHHHHHHH
T ss_pred             ccCCcchh-heeehhhhhHHhh
Confidence            44444444 4444444544444

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.0044  Score=36.25  Aligned_cols=27  Identities=41%  Similarity=0.696  Sum_probs=24.2

Q ss_pred             CccccccchhhccCHHHHHHHHHHhcC
Q 020075          124 HIHFCDICGKGFKRDANLRMHMRAHGD  150 (331)
Q Consensus       124 ~~~~C~~C~k~F~~~~~L~~H~~~H~~  150 (331)
                      -.|.|..|||.|+....|+.|...|.-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcCc
Confidence            368999999999999999999998853

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.0039  Score=33.90  Aligned_cols=22  Identities=36%  Similarity=0.365  Sum_probs=18.3

Q ss_pred             cchhhccCHHHHHHHHHHhcCC
Q 020075          130 ICGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       130 ~C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      -=++.|...+.|..|||+|+|+
T Consensus        12 R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          12 RELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCcchhHHHHHHHHhhcCCC
Confidence            3456799999999999999985

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.0051  Score=31.07  Aligned_cols=25  Identities=32%  Similarity=0.518  Sum_probs=22.6

Q ss_pred             ccccccchhhccCHHHHHHHHHHhc
Q 020075          125 IHFCDICGKGFKRDANLRMHMRAHG  149 (331)
Q Consensus       125 ~~~C~~C~k~F~~~~~L~~H~~~H~  149 (331)
                      |-+|+.|..+..++..|+.|.|+|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            5689999999999999999999984

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.85  E-value=0.012  Score=28.85  Aligned_cols=21  Identities=38%  Similarity=0.901  Sum_probs=18.1

Q ss_pred             eecc-CCcccCCHHHHHHHHHh
Q 020075          239 WKCS-CGTSFSRKDKLFGHVAL  259 (331)
Q Consensus       239 ~~C~-C~k~F~~~~~L~~H~~~  259 (331)
                      |.|+ |-|.|.++.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            7788 99999999999888876

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.0076  Score=32.34  Aligned_cols=27  Identities=26%  Similarity=0.556  Sum_probs=23.9

Q ss_pred             ccccccchhhccCHHHHHHHHHHhcCC
Q 020075          125 IHFCDICGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       125 ~~~C~~C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      .|.|..|||+|++...+.+|...-+|.
T Consensus         4 afvcskcgktftrrntm~rha~nc~g~   30 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAGP   30 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCCC
Confidence            589999999999999999998876663

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.014  Score=34.13  Aligned_cols=24  Identities=29%  Similarity=0.582  Sum_probs=21.4

Q ss_pred             ceecc-CCcccCCHHHHHHHHHhhc
Q 020075          238 RWKCS-CGTSFSRKDKLFGHVALFE  261 (331)
Q Consensus       238 p~~C~-C~k~F~~~~~L~~H~~~H~  261 (331)
                      .|.|- |+|.|.....|++|...|-
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            47899 9999999999999999884

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.95  E-value=0.021  Score=28.68  Aligned_cols=22  Identities=32%  Similarity=0.659  Sum_probs=20.6

Q ss_pred             ceecc-CCcccCCHHHHHHHHHh
Q 020075          238 RWKCS-CGTSFSRKDKLFGHVAL  259 (331)
Q Consensus       238 p~~C~-C~k~F~~~~~L~~H~~~  259 (331)
                      .|.|+ |+....+++.|+.|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            48999 99999999999999986

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.74  E-value=0.018  Score=29.89  Aligned_cols=28  Identities=25%  Similarity=0.688  Sum_probs=24.7

Q ss_pred             Ccccccc--chhhccCHHHHHHHHHHhcCC
Q 020075          124 HIHFCDI--CGKGFKRDANLRMHMRAHGDE  151 (331)
Q Consensus       124 ~~~~C~~--C~k~F~~~~~L~~H~~~H~~~  151 (331)
                      +.|.|..  |+..|.....|..|+-.|+|+
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            5688865  999999999999999999985

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=0.019  Score=28.97  Aligned_cols=21  Identities=19%  Similarity=0.510  Sum_probs=17.9

Q ss_pred             ecc---CCcccCCHHHHHHHHHhh
Q 020075          240 KCS---CGTSFSRKDKLFGHVALF  260 (331)
Q Consensus       240 ~C~---C~k~F~~~~~L~~H~~~H  260 (331)
                      .|+   |.|.|...++++.|+-+|
T Consensus         3 ~CphkgC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGG
T ss_pred             cCCcccHHHHhhchHHHHHHhhcc
Confidence            465   999999999999998877

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.12  E-value=0.027  Score=27.55  Aligned_cols=21  Identities=33%  Similarity=0.790  Sum_probs=19.5

Q ss_pred             ccCCCCCCCccCChhHhHHHhh
Q 020075          211 YSCDKCHKKSFSVVSDLRSHYK  232 (331)
Q Consensus       211 ~~C~~C~k~~f~~~~~L~~H~~  232 (331)
                      |.|+.|-| .|.++.++..|.+
T Consensus         2 ypcp~cfk-eftrkdnm~ahvk   22 (26)
T d2drpa2           2 YPCPFCFK-EFTRKDNMTAHVK   22 (26)
T ss_dssp             EECTTTCC-EESCHHHHHHHHH
T ss_pred             cCCchhhH-HhccccCceEEEE
Confidence            78999999 9999999999987

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.93  E-value=0.042  Score=29.06  Aligned_cols=21  Identities=43%  Similarity=0.816  Sum_probs=15.8

Q ss_pred             ceecc-CCcccCCHHHHHHHHH
Q 020075          238 RWKCS-CGTSFSRKDKLFGHVA  258 (331)
Q Consensus       238 p~~C~-C~k~F~~~~~L~~H~~  258 (331)
                      .|.|. ||-.|++.+.|..|+.
T Consensus         8 rf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ceeccccceeecChhHHHhhhh
Confidence            47787 8888888888877754

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.89  E-value=0.14  Score=25.99  Aligned_cols=21  Identities=24%  Similarity=0.548  Sum_probs=11.9

Q ss_pred             eecc-CCcccCCHHHHHHHHHh
Q 020075          239 WKCS-CGTSFSRKDKLFGHVAL  259 (331)
Q Consensus       239 ~~C~-C~k~F~~~~~L~~H~~~  259 (331)
                      |.|. |||...+...++.|+..
T Consensus         3 ftc~hcgkqlks~~gmkyhvma   24 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMA   24 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHH
T ss_pred             eechhHHHHHhhccCceEEEee
Confidence            4555 66666655555555543

>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CHY zinc finger-like
superfamily: CHY zinc finger-like
family: CHY zinc finger
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.56  E-value=0.14  Score=33.44  Aligned_cols=64  Identities=20%  Similarity=0.363  Sum_probs=41.2

Q ss_pred             cCCcccccCCCccceeCCCCCCccccccCCccccccHHH---HhcccccccCCCCccCCCCCCCccCChhHhHHHhhccC
Q 020075          159 AKPEKGSVSGRKTRFSCPYDGCNRNKKHKKFRALKSVIC---VKNHFKRSHCPKMYSCDKCHKKSFSVVSDLRSHYKNCG  235 (331)
Q Consensus       159 ~~~~~c~~C~~~~~~~C~~c~~~~~~~h~~~k~f~~~~~---l~~H~~~h~~~k~~~C~~C~k~~f~~~~~L~~H~~H~~  235 (331)
                      .....|.+-.+.-...|.-|+          ..+.|..|   |..|.......+.+.|..||. ...             
T Consensus         7 ~~~~gC~HY~r~~~l~C~~Cg----------~~~~C~~C~~~lt~H~~~~k~~~~l~CH~Cg~-~~~-------------   62 (74)
T d2dkta1           7 QGPRGCEHYDRACLLKAPCCD----------KLYTCRLCHDTNEDHQLDRFKVKEVQCINCEK-LQH-------------   62 (74)
T ss_dssp             CCSSSCSSCCCSEEEEETTTT----------EEESSHHHHHHTSSSCCCSSSCCCEEESSSCC-EEC-------------
T ss_pred             CCCCCCcccCcceEEEcCcCc----------CeeeCCCCCCcccccccccccCCEEEeccCCC-ccc-------------
Confidence            344556666665567889998          88888877   334432222346788999987 432             


Q ss_pred             CCceecc-CCccc
Q 020075          236 ESRWKCS-CGTSF  247 (331)
Q Consensus       236 ekp~~C~-C~k~F  247 (331)
                       .+-.|+ ||..|
T Consensus        63 -~~~~C~~Cgs~F   74 (74)
T d2dkta1          63 -AQQTCEDCSTLF   74 (74)
T ss_dssp             -SCSBCSSSCCBS
T ss_pred             -CCCcCCCCCCCC
Confidence             234588 88776

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=90.01  E-value=0.068  Score=26.52  Aligned_cols=24  Identities=38%  Similarity=0.866  Sum_probs=20.5

Q ss_pred             ccccc--chhhccCHHHHHHHHHHhc
Q 020075          126 HFCDI--CGKGFKRDANLRMHMRAHG  149 (331)
Q Consensus       126 ~~C~~--C~k~F~~~~~L~~H~~~H~  149 (331)
                      |.|..  |+|.|..-..|+.|+-+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            56654  9999999999999998885

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.80  E-value=0.14  Score=25.85  Aligned_cols=17  Identities=35%  Similarity=0.599  Sum_probs=14.8

Q ss_pred             CCcccCCHHHHHHHHHh
Q 020075          243 CGTSFSRKDKLFGHVAL  259 (331)
Q Consensus       243 C~k~F~~~~~L~~H~~~  259 (331)
                      |||.|+.+..|..|.+-
T Consensus         8 c~kifsnrqylnhh~ky   24 (30)
T d2dlka1           8 CGRIFSNRQYLNHHKKY   24 (30)
T ss_dssp             TCCEESSHHHHHHHHHH
T ss_pred             chhhhccHHHHHhHHHH
Confidence            99999999999888775

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=87.86  E-value=0.36  Score=24.39  Aligned_cols=23  Identities=22%  Similarity=0.583  Sum_probs=17.1

Q ss_pred             Cceecc---CCcccCCHHHHHHHHHh
Q 020075          237 SRWKCS---CGTSFSRKDKLFGHVAL  259 (331)
Q Consensus       237 kp~~C~---C~k~F~~~~~L~~H~~~  259 (331)
                      |.|.|.   |+-.|.++.+++.|...
T Consensus         1 knf~cdsd~cdl~fttkanmkkhfnr   26 (31)
T d1tf3a3           1 KNFTCDSDGCDLRFTTKANMKKHFNR   26 (31)
T ss_dssp             CCEECSSSSCCCEESSHHHHHHHHHH
T ss_pred             CCccccCCCcceEEeehHHHHHHHhh
Confidence            357774   88888888888888644

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.84  E-value=0.025  Score=35.70  Aligned_cols=23  Identities=13%  Similarity=0.312  Sum_probs=17.8

Q ss_pred             cCCCccccccchhhccCHHHHHH
Q 020075          121 LAEHIHFCDICGKGFKRDANLRM  143 (331)
Q Consensus       121 ~~~~~~~C~~C~k~F~~~~~L~~  143 (331)
                      .....|+|+.|+++|+....+..
T Consensus        10 ~~~~~y~Cp~C~~~ys~Lda~~L   32 (62)
T d1vd4a_          10 TNRASFKCPVCSSTFTDLEANQL   32 (62)
T ss_dssp             CSSSEEECSSSCCEEEHHHHHHH
T ss_pred             ccCCceECCCCCCCcchhhHHHh
Confidence            34568999999999997665544

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.17  E-value=0.22  Score=25.11  Aligned_cols=21  Identities=29%  Similarity=0.343  Sum_probs=18.0

Q ss_pred             CCCCCCccCChhHhHHHhh--ccC
Q 020075          214 DKCHKKSFSVVSDLRSHYK--NCG  235 (331)
Q Consensus       214 ~~C~k~~f~~~~~L~~H~~--H~~  235 (331)
                      +-||| .|+.+..|..|.+  |..
T Consensus         6 ~gc~k-ifsnrqylnhh~kyqh~h   28 (30)
T d2dlka1           6 PGCGR-IFSNRQYLNHHKKYQHIH   28 (30)
T ss_dssp             TTTCC-EESSHHHHHHHHHHGGGS
T ss_pred             CCchh-hhccHHHHHhHHHHHHhh
Confidence            56999 9999999999998  643

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.56  E-value=0.094  Score=33.55  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=20.2

Q ss_pred             Cceecc-CCcccCCHHHHHHHHHh
Q 020075          237 SRWKCS-CGTSFSRKDKLFGHVAL  259 (331)
Q Consensus       237 kp~~C~-C~k~F~~~~~L~~H~~~  259 (331)
                      -.|.|. |+|.|.+...|..|+++
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CEEecccccCccCCHHHHHHHHcc
Confidence            348999 99999999999999865

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.32  E-value=0.25  Score=25.93  Aligned_cols=23  Identities=30%  Similarity=0.517  Sum_probs=20.6

Q ss_pred             CCccCCCCCCCccCChhHhHHHhh
Q 020075          209 KMYSCDKCHKKSFSVVSDLRSHYK  232 (331)
Q Consensus       209 k~~~C~~C~k~~f~~~~~L~~H~~  232 (331)
                      ..|.|.-||- .|++.+.|..|+.
T Consensus         7 arf~c~pcgi-rfss~stleahqt   29 (36)
T d1y0jb1           7 ARFMCLPCGI-AFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCBCTTTCC-BCSCHHHHHHHTT
T ss_pred             cceeccccce-eecChhHHHhhhh
Confidence            3489999999 9999999999986

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.85  E-value=0.15  Score=25.61  Aligned_cols=19  Identities=37%  Similarity=0.898  Sum_probs=17.4

Q ss_pred             chhhccCHHHHHHHHHHhc
Q 020075          131 CGKGFKRDANLRMHMRAHG  149 (331)
Q Consensus       131 C~k~F~~~~~L~~H~~~H~  149 (331)
                      |+|-|...+.++.|+.+|.
T Consensus         9 C~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             CCCEESSHHHHHHHHGGGS
T ss_pred             HHHHhhchHHHHHHhhccC
Confidence            9999999999999998874

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=84.68  E-value=0.16  Score=27.09  Aligned_cols=27  Identities=22%  Similarity=0.491  Sum_probs=23.7

Q ss_pred             CCCccccccchhhccCHHHHHHHHHHh
Q 020075          122 AEHIHFCDICGKGFKRDANLRMHMRAH  148 (331)
Q Consensus       122 ~~~~~~C~~C~k~F~~~~~L~~H~~~H  148 (331)
                      |+..|.|.+|.+.++..+++-+|..+-
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtS   31 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTS   31 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHH
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhh
Confidence            567899999999999999999997653

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=84.15  E-value=0.44  Score=25.36  Aligned_cols=24  Identities=17%  Similarity=0.592  Sum_probs=15.7

Q ss_pred             CCceecc-CCcccCCHHHHHHHHHh
Q 020075          236 ESRWKCS-CGTSFSRKDKLFGHVAL  259 (331)
Q Consensus       236 ekp~~C~-C~k~F~~~~~L~~H~~~  259 (331)
                      +..|.|. |.+.+...+++-+|.-+
T Consensus         6 ~~~yRC~~C~r~YTHISNFCRHyvt   30 (37)
T d2drpa1           6 EHTYRCKVCSRVYTHISNFCRHYVT   30 (37)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHH
T ss_pred             CcEEEeehhhHHHHHHHHHHHHHHh
Confidence            3456677 77777777777776554

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.74  E-value=0.5  Score=23.83  Aligned_cols=22  Identities=23%  Similarity=0.724  Sum_probs=18.5

Q ss_pred             CccCCCCCCCccCChhHhHHHhh
Q 020075          210 MYSCDKCHKKSFSVVSDLRSHYK  232 (331)
Q Consensus       210 ~~~C~~C~k~~f~~~~~L~~H~~  232 (331)
                      .|.|..||| ...+...++-|..
T Consensus         2 ~ftc~hcgk-qlks~~gmkyhvm   23 (30)
T d2ctda2           2 MFTCHHCGK-QLRSLAGMKYHVM   23 (30)
T ss_dssp             CCCCSSSCC-CCSSHHHHHHHHH
T ss_pred             ceechhHHH-HHhhccCceEEEe
Confidence            478999999 8888888888876

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=83.67  E-value=0.69  Score=26.57  Aligned_cols=24  Identities=21%  Similarity=0.425  Sum_probs=15.2

Q ss_pred             CCCccCCCCCCCccCChhHhHHHhh
Q 020075          208 PKMYSCDKCHKKSFSVVSDLRSHYK  232 (331)
Q Consensus       208 ~k~~~C~~C~k~~f~~~~~L~~H~~  232 (331)
                      +.|-.|++|+. ......+|++|+.
T Consensus        22 ~qpatcpic~a-virqsrnlrrhle   45 (54)
T d1yuja_          22 EQPATCPICYA-VIRQSRNLRRHLE   45 (54)
T ss_dssp             SCCEECTTTCC-EESSHHHHHHHHH
T ss_pred             cCCCCCchHHH-HHHHHHHHHHHHH
Confidence            45666666666 6666666666665

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.16  E-value=0.38  Score=26.66  Aligned_cols=13  Identities=15%  Similarity=0.148  Sum_probs=8.0

Q ss_pred             cCCCCccCCCCCC
Q 020075          206 HCPKMYSCDKCHK  218 (331)
Q Consensus       206 ~~~k~~~C~~C~k  218 (331)
                      .++.|-.|++|+.
T Consensus        16 ~g~~P~~CPvCg~   28 (37)
T d1nnqa2          16 VDEAPEYCPVCGA   28 (37)
T ss_dssp             ESCCCSBCTTTCC
T ss_pred             cCCCCCcCCCCCC
Confidence            3446667777764

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=83.08  E-value=0.33  Score=27.95  Aligned_cols=25  Identities=32%  Similarity=0.557  Sum_probs=23.2

Q ss_pred             CCccccccchhhccCHHHHHHHHHH
Q 020075          123 EHIHFCDICGKGFKRDANLRMHMRA  147 (331)
Q Consensus       123 ~~~~~C~~C~k~F~~~~~L~~H~~~  147 (331)
                      +.|-.|++|+....+..+|++|+..
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHH
Confidence            6799999999999999999999874