Query 020076
Match_columns 331
No_of_seqs 206 out of 1725
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 06:49:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020076.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020076hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14650 UDP-N-acetylenolpyruv 100.0 7.4E-88 1.6E-92 639.2 30.4 282 46-330 16-301 (302)
2 COG0812 MurB UDP-N-acetylmuram 100.0 1.2E-87 2.7E-92 629.9 28.1 282 44-329 2-287 (291)
3 PRK14653 UDP-N-acetylenolpyruv 100.0 5.6E-87 1.2E-91 633.9 29.6 280 44-328 15-297 (297)
4 PRK00046 murB UDP-N-acetylenol 100.0 2.2E-86 4.8E-91 637.3 29.7 284 44-328 2-334 (334)
5 PRK14648 UDP-N-acetylenolpyruv 100.0 5.2E-86 1.1E-90 635.0 29.6 286 44-329 11-342 (354)
6 PRK14649 UDP-N-acetylenolpyruv 100.0 2.2E-85 4.8E-90 623.8 30.6 283 44-329 2-295 (295)
7 PRK13906 murB UDP-N-acetylenol 100.0 9.9E-85 2.2E-89 622.2 30.9 281 44-329 18-301 (307)
8 PRK14652 UDP-N-acetylenolpyruv 100.0 1.4E-84 2.9E-89 620.0 30.7 278 45-329 18-299 (302)
9 PRK13903 murB UDP-N-acetylenol 100.0 5.2E-84 1.1E-88 627.5 30.5 289 39-329 10-360 (363)
10 PRK12436 UDP-N-acetylenolpyruv 100.0 1.2E-83 2.7E-88 614.4 29.6 281 44-329 18-301 (305)
11 TIGR00179 murB UDP-N-acetyleno 100.0 3.1E-83 6.7E-88 606.5 29.8 276 51-329 1-284 (284)
12 PRK14651 UDP-N-acetylenolpyruv 100.0 2.4E-82 5.2E-87 593.9 27.1 261 47-330 5-269 (273)
13 PRK13905 murB UDP-N-acetylenol 100.0 2.7E-81 5.9E-86 597.2 30.5 280 45-329 13-296 (298)
14 PRK13904 murB UDP-N-acetylenol 100.0 1.1E-80 2.5E-85 577.6 25.1 256 46-328 2-257 (257)
15 PF02873 MurB_C: UDP-N-acetyle 100.0 4.7E-40 1E-44 267.4 11.3 101 229-329 5-105 (105)
16 TIGR00387 glcD glycolate oxida 99.9 5.9E-24 1.3E-28 211.3 15.8 162 66-228 1-176 (413)
17 PRK11230 glycolate oxidase sub 99.9 1.4E-23 3E-28 213.2 17.1 179 48-227 38-232 (499)
18 TIGR01678 FAD_lactone_ox sugar 99.9 8.5E-23 1.8E-27 204.3 17.1 157 59-226 11-182 (438)
19 PF01565 FAD_binding_4: FAD bi 99.9 1.9E-22 4.1E-27 170.6 14.3 131 63-193 1-139 (139)
20 PLN02465 L-galactono-1,4-lacto 99.9 3.5E-22 7.5E-27 204.2 17.8 158 59-227 93-265 (573)
21 PLN02805 D-lactate dehydrogena 99.9 6.4E-22 1.4E-26 202.8 18.3 163 58-227 129-309 (555)
22 COG0277 GlcD FAD/FMN-containin 99.9 1.6E-21 3.4E-26 194.6 14.9 169 59-228 28-209 (459)
23 TIGR01676 GLDHase galactonolac 99.9 7E-21 1.5E-25 193.4 16.5 161 60-227 59-230 (541)
24 TIGR01679 bact_FAD_ox FAD-link 99.9 3.7E-21 8.1E-26 191.6 14.1 157 60-226 9-176 (419)
25 TIGR01677 pln_FAD_oxido plant- 99.8 2.6E-20 5.6E-25 190.9 17.0 160 62-226 31-212 (557)
26 PLN02441 cytokinin dehydrogena 99.8 3E-20 6.5E-25 188.7 16.7 163 60-227 62-243 (525)
27 PRK11282 glcE glycolate oxidas 99.8 3.1E-19 6.7E-24 173.8 14.3 150 71-227 3-171 (352)
28 PRK11183 D-lactate dehydrogena 99.8 9.2E-19 2E-23 176.5 14.0 129 60-189 36-178 (564)
29 KOG1231 Proteins containing th 99.8 2.5E-18 5.4E-23 167.8 14.5 167 58-226 59-239 (505)
30 KOG1232 Proteins containing th 99.7 2E-16 4.4E-21 151.6 9.2 180 47-227 71-267 (511)
31 KOG4730 D-arabinono-1, 4-lacto 99.7 5.2E-16 1.1E-20 151.7 12.1 156 61-227 48-219 (518)
32 KOG1233 Alkyl-dihydroxyacetone 99.6 6.9E-14 1.5E-18 134.7 15.0 169 59-228 157-342 (613)
33 PF00941 FAD_binding_5: FAD bi 97.9 9.3E-05 2E-09 65.3 9.6 145 65-220 4-168 (171)
34 KOG1262 FAD-binding protein DI 97.7 5.8E-05 1.2E-09 73.9 5.4 103 118-227 116-230 (543)
35 PRK09971 xanthine dehydrogenas 97.2 0.0028 6E-08 60.6 10.8 148 65-222 6-173 (291)
36 TIGR02963 xanthine_xdhA xanthi 97.2 0.0014 3.1E-08 66.7 9.2 147 62-222 191-358 (467)
37 TIGR03195 4hydrxCoA_B 4-hydrox 96.6 0.0039 8.5E-08 60.5 6.2 147 66-221 7-211 (321)
38 PRK09799 putative oxidoreducta 96.6 0.0032 6.9E-08 59.3 5.2 97 65-165 4-110 (258)
39 PLN02906 xanthine dehydrogenas 96.5 0.012 2.6E-07 67.0 9.6 148 64-221 229-405 (1319)
40 TIGR03312 Se_sel_red_FAD proba 95.9 0.036 7.7E-07 52.2 8.4 95 66-165 4-109 (257)
41 TIGR02969 mam_aldehyde_ox alde 95.8 0.044 9.6E-07 62.5 9.9 149 62-221 235-413 (1330)
42 TIGR03199 pucC xanthine dehydr 95.3 0.061 1.3E-06 50.7 7.4 132 69-220 1-156 (264)
43 COG1319 CoxM Aerobic-type carb 94.1 0.3 6.4E-06 46.7 8.9 146 65-223 5-173 (284)
44 COG4630 XdhA Xanthine dehydrog 88.3 0.84 1.8E-05 45.2 5.3 146 51-207 191-357 (493)
45 PLN00192 aldehyde oxidase 78.8 2.6 5.6E-05 48.6 4.8 100 64-164 234-351 (1344)
46 KOG0430 Xanthine dehydrogenase 71.9 4.3 9.3E-05 45.5 4.0 153 60-223 211-388 (1257)
47 PRK04322 peptidyl-tRNA hydrola 61.3 13 0.00029 30.6 4.1 38 55-92 40-77 (113)
48 cd02407 PTH2_family Peptidyl-t 60.1 15 0.00034 30.3 4.3 39 54-92 41-79 (115)
49 PF01981 PTH2: Peptidyl-tRNA h 53.0 21 0.00046 29.2 4.0 39 54-92 42-80 (116)
50 TIGR00283 arch_pth2 peptidyl-t 48.8 29 0.00062 28.7 4.2 36 57-92 44-79 (115)
51 COG4359 Uncharacterized conser 44.4 23 0.0005 32.1 3.1 25 75-99 78-102 (220)
52 cd02430 PTH2 Peptidyl-tRNA hyd 42.7 41 0.0009 27.7 4.2 36 57-92 44-79 (115)
53 KOG3282 Uncharacterized conser 39.9 43 0.00094 30.1 4.1 37 56-92 118-154 (190)
54 PHA00692 hypothetical protein 39.2 15 0.00033 26.7 0.9 23 274-303 39-61 (74)
55 cd02429 PTH2_like Peptidyl-tRN 35.8 79 0.0017 26.2 4.8 33 60-92 53-85 (116)
56 COG2513 PrpB PEP phosphonomuta 35.0 27 0.00058 33.6 2.1 50 262-313 28-77 (289)
57 PF02244 Propep_M14: Carboxype 34.9 53 0.0011 24.1 3.4 32 58-92 31-62 (74)
58 TIGR01769 GGGP geranylgeranylg 34.8 64 0.0014 29.4 4.5 130 2-145 63-199 (205)
59 PF03880 DbpA: DbpA RNA bindin 32.4 36 0.00078 25.4 2.1 43 263-307 18-60 (74)
60 PF04517 Microvir_lysis: Micro 30.4 20 0.00044 24.1 0.4 16 19-34 23-38 (42)
61 PRK04169 geranylgeranylglycery 28.7 70 0.0015 29.7 3.8 132 2-146 70-208 (232)
62 PRK01221 putative deoxyhypusin 28.0 58 0.0013 31.7 3.2 94 76-171 174-285 (312)
63 cd01824 Phospholipase_B_like P 26.4 85 0.0018 29.9 4.0 43 286-328 79-123 (288)
64 PF12812 PDZ_1: PDZ-like domai 25.7 32 0.00069 26.3 0.8 58 249-311 10-74 (78)
65 cd07033 TPP_PYR_DXS_TK_like Py 25.7 1E+02 0.0023 26.2 4.1 28 65-92 126-153 (156)
66 PF15608 PELOTA_1: PELOTA RNA 24.8 93 0.002 25.2 3.3 34 62-95 56-89 (100)
67 cd07036 TPP_PYR_E1-PDHc-beta_l 24.1 1.2E+02 0.0026 26.5 4.3 29 64-92 136-164 (167)
68 TIGR01768 GGGP-family geranylg 24.1 82 0.0018 29.1 3.3 131 2-146 65-203 (223)
69 PF03147 FDX-ACB: Ferredoxin-f 23.4 92 0.002 24.2 3.1 27 295-321 67-93 (94)
70 TIGR02321 Pphn_pyruv_hyd phosp 23.3 45 0.00097 32.0 1.5 59 253-313 16-74 (290)
71 PF08853 DUF1823: Domain of un 23.2 28 0.0006 28.8 0.0 15 266-280 80-94 (116)
72 PF09702 Cas_Csa5: CRISPR-asso 23.2 1.9E+02 0.0042 23.5 4.8 41 274-314 50-90 (105)
73 PRK06683 hypothetical protein; 22.8 1.3E+02 0.0027 23.3 3.7 33 61-93 26-60 (82)
74 cd06565 GH20_GcnA-like Glycosy 22.7 80 0.0017 30.2 3.1 24 69-92 56-79 (301)
75 PF02779 Transket_pyr: Transke 22.6 1.3E+02 0.0028 26.1 4.2 33 64-96 139-173 (178)
76 PF02844 GARS_N: Phosphoribosy 22.4 72 0.0016 25.8 2.3 27 70-96 46-72 (100)
77 PRK15109 antimicrobial peptide 22.3 1.5E+02 0.0033 30.6 5.3 52 263-325 363-415 (547)
78 cd08512 PBP2_NikA_DppA_OppA_li 21.4 1.9E+02 0.0041 28.8 5.7 50 262-325 319-369 (476)
79 COG1154 Dxs Deoxyxylulose-5-ph 21.3 4E+02 0.0087 28.4 8.0 40 62-101 441-484 (627)
80 PF11548 Receptor_IA-2: Protei 21.3 1.2E+02 0.0026 24.2 3.3 29 293-321 54-82 (91)
81 TIGR01383 not_thiJ DJ-1 family 21.1 2.1E+02 0.0046 24.3 5.2 71 73-143 83-166 (179)
82 PF14836 Ubiquitin_3: Ubiquiti 21.0 90 0.002 24.7 2.5 22 306-329 26-47 (88)
83 PRK09860 putative alcohol dehy 20.8 1.1E+02 0.0023 30.4 3.6 28 71-98 73-101 (383)
84 COG1920 Predicted nucleotidylt 20.8 62 0.0013 29.5 1.7 87 64-170 88-189 (210)
85 PRK04175 rpl7ae 50S ribosomal 20.6 1.4E+02 0.003 24.8 3.7 35 61-95 45-82 (122)
86 TIGR01101 V_ATP_synt_F vacuola 20.6 59 0.0013 26.9 1.5 48 275-324 19-68 (115)
87 cd08173 Gro1PDH Sn-glycerol-1- 20.4 1.5E+02 0.0033 28.6 4.5 26 71-96 63-89 (339)
88 PRK03971 putative deoxyhypusin 20.4 79 0.0017 31.1 2.5 97 76-175 194-310 (334)
89 PRK15138 aldehyde reductase; P 20.4 1E+02 0.0023 30.5 3.5 28 71-98 70-98 (387)
No 1
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=100.00 E-value=7.4e-88 Score=639.17 Aligned_cols=282 Identities=29% Similarity=0.432 Sum_probs=266.5
Q ss_pred ccCCCcccccccCCCccccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccccCC-CCEEEEEc-CCCceEEcCCe
Q 020076 46 RRNKLLKDLSTWGIGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDDLG-FDGCVILN-RIEFLERKETG 123 (331)
Q Consensus 46 ~~~~~L~~~tt~~iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d~~-~~GvVI~~-~l~~i~~~~~~ 123 (331)
-.++||++||||+|||+|+++++|+|++||.+++++++++++|++++|+|||+|++|.| ++|+||.+ +++.+++++ .
T Consensus 16 ~~~~~L~~~tt~~iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g~~~g~vi~~~~~~~i~~~~-~ 94 (302)
T PRK14650 16 PQTKNLANYTTYKIGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEIDFPIIYTGHLNKIEIHD-N 94 (302)
T ss_pred CCCccccccceeeeCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEECCCccceEEEEECCcCcEEEeC-C
Confidence 35689999999999999999999999999999999999999999999999999999999 99999987 677777654 4
Q ss_pred EEEEcCCCcHHHHHHHHHHcCCCcccCCCCccccchHHHHhhhhccCccccceeeEEEEEeCCCcEEEEecCcccccccc
Q 020076 124 IYRVGSGFRFNSLGMQCCTEGFTGLEFAAGIPGTVGGAVYMNAGANGQETAGVIDSVDIVTLGGKLQRVSRNDLKFGYRS 203 (331)
Q Consensus 124 ~v~v~AG~~l~~L~~~~~~~Gl~GlE~l~gIPgTVGGav~mNaGayG~ei~d~v~sv~vv~~~G~v~~~~~~el~~~YR~ 203 (331)
.|+|+||+.|++|+++|.++||+||||++|||||||||++|||||||.||+|+|.+|+++|.+|++++++++||.|+||+
T Consensus 95 ~v~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mNAGayG~ei~d~l~sV~~~d~~g~~~~~~~~e~~f~YR~ 174 (302)
T PRK14650 95 QIVAECGTNFEDLCKFALQNELSGLEFIYGLPGTLGGAIWMNARCFGNEISEILDKITFIDEKGKTICKKFKKEEFKYKI 174 (302)
T ss_pred EEEEEeCCcHHHHHHHHHHcCCchhhhhcCCCcchhHHHHhhCCccccchheeEEEEEEEECCCCEEEEEHHHcCccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCceEEEEEEEEeEeCChH--HHHHHHHHHHHhcCCCCCCCCeeeeccCCCCCCccHHHHHHHhCCCCeeECCE
Q 020076 204 SSFQDMKDLAAIVAVTFQLQESTSA--RRKQREYLDRRRMTQPLGERTAGSVFRNPSDKEVAAAELIERAGLKGFRVGGA 281 (331)
Q Consensus 204 s~f~~~g~~gII~~a~lkL~~~~~~--~~~~~~~~~~r~~~qP~~~~saGS~FkNP~~~~~~Ag~LIe~~GlKG~~~Gga 281 (331)
|.|++. .+||++|+|+|.+.++. ++.|++.+++|+++||..+||||||||||++.+.+||||||+|||||+|+|+|
T Consensus 175 S~f~~~--~~iIl~a~f~L~~~~~~~i~~~~~~~~~~R~~kqP~~~psaGS~FKNP~~~~~~Ag~LIe~aGlKG~riG~A 252 (302)
T PRK14650 175 SPFQNK--NTFILKATLNLKKGNKKHIEEIMKQNKQIRINKGHYLFPSSGSTFKNNKAFLKPTGQIIEECKLKGLSIGGA 252 (302)
T ss_pred ccCCCC--CEEEEEEEEEEcCCCHHHHHHHHHHHHHHHhcCCcCCCCCcccceECCCCCccchHHHHHHcCCCCCccCCE
Confidence 999853 37999999999998754 56788899999999999999999999999853349999999999999999999
Q ss_pred EEeccCcceEEeCCCCCHHHHHHHHHHHHHHHHHHhCCeeecceEEecC
Q 020076 282 MVSNIHANFFVNTGGSTSRDMLNLIAFVKEKVDQKFGVQLKEEVQYFHP 330 (331)
Q Consensus 282 ~vS~~HanfivN~g~Ata~dv~~Li~~v~~~V~~~~gi~Le~Ev~~i~~ 330 (331)
+||+||||||||.|+||++||++||++||++|+++|||+||+||+++|+
T Consensus 253 ~VS~kHanfIVN~G~Ata~Dil~Li~~v~~~V~~~~GI~Le~Ev~~iG~ 301 (302)
T PRK14650 253 TVSHYHGNFIININNATSKDIKTLIEKVKTEVQIKTGFLLEEEVLYIGF 301 (302)
T ss_pred EEccccccEEEECCCCCHHHHHHHHHHHHHHHHHHHCCeeeEeeEEEec
Confidence 9999999999999999999999999999999999999999999999984
No 2
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.2e-87 Score=629.95 Aligned_cols=282 Identities=40% Similarity=0.674 Sum_probs=266.3
Q ss_pred ccccCCCcccccccCCCccccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccccCCCCEEEEEc-CCCceEEcC-
Q 020076 44 FIRRNKLLKDLSTWGIGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDDLGFDGCVILN-RIEFLERKE- 121 (331)
Q Consensus 44 ~~~~~~~L~~~tt~~iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d~~~~GvVI~~-~l~~i~~~~- 121 (331)
.+++++||++||||||||+|++++.|+++|||.++++++++.++|++++|+|||+|+.|++++|+||.+ .+..++++.
T Consensus 2 ~~~~~~~L~~~ttfriGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g~~gvvi~~~~~~~~~~~~~ 81 (291)
T COG0812 2 RIKTNVPLKRYTTFRIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRDGGIGGVVIKLGKLNFIEIEGD 81 (291)
T ss_pred CcccCCccccceeEecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEecCCCceEEEEcccccceeeecc
Confidence 467889999999999999999999999999999999999999999999999999999999999999987 466665553
Q ss_pred CeEEEEcCCCcHHHHHHHHHHcCCCcccCCCCccccchHHHHhhhhccCccccceeeEEEEEeCCCcEEEEecCcccccc
Q 020076 122 TGIYRVGSGFRFNSLGMQCCTEGFTGLEFAAGIPGTVGGAVYMNAGANGQETAGVIDSVDIVTLGGKLQRVSRNDLKFGY 201 (331)
Q Consensus 122 ~~~v~v~AG~~l~~L~~~~~~~Gl~GlE~l~gIPgTVGGav~mNaGayG~ei~d~v~sv~vv~~~G~v~~~~~~el~~~Y 201 (331)
+.+|+|+||+.|.+|++++.++||+||||++|||||||||++|||||||.||+|++++|+++|.+|++++++++||.|+|
T Consensus 82 ~~~i~a~aG~~~~~l~~~~~~~gl~GlE~l~gIPGsvGgav~mNaGAyG~Ei~d~~~~v~~ld~~G~~~~l~~~el~f~Y 161 (291)
T COG0812 82 DGLIEAGAGAPWHDLVRFALENGLSGLEFLAGIPGSVGGAVIMNAGAYGVEISDVLVSVEVLDRDGEVRWLSAEELGFGY 161 (291)
T ss_pred CCeEEEccCCcHHHHHHHHHHcCCcchhhhcCCCcccchhhhccCcccccchheeEEEEEEEcCCCCEEEEEHHHhCccc
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCceEEEEEEEEeEeCChH--HHHHHHHHHHHhcCCCCCCCCeeeeccCCCCCCccHHHHHHHhCCCCeeEC
Q 020076 202 RSSSFQDMKDLAAIVAVTFQLQESTSA--RRKQREYLDRRRMTQPLGERTAGSVFRNPSDKEVAAAELIERAGLKGFRVG 279 (331)
Q Consensus 202 R~s~f~~~g~~gII~~a~lkL~~~~~~--~~~~~~~~~~r~~~qP~~~~saGS~FkNP~~~~~~Ag~LIe~~GlKG~~~G 279 (331)
|+|.|+.+. ++|++|+|+|.+.+++ .++|.+..++|..+||.+.|||||+||||+. .+||||||+|||||+++|
T Consensus 162 R~S~f~~~~--~vvl~v~f~L~~~~~~~I~~~~~~ir~~R~~~qP~~~ps~GS~FKNP~~--~~Ag~LIe~aGLKG~~iG 237 (291)
T COG0812 162 RTSPFKKEY--LVVLSVEFKLTKGDPEDILAAMCAIRRRRELKQPIDLPSAGSFFKNPVG--DFAGWLIEEAGLKGYRIG 237 (291)
T ss_pred ccCcCCCCC--EEEEEEEEEeCCCCHHHHHHHHHHHHHhhccCCCCcCCCCCccccCCCc--chHHHHHHHcCCCCCccC
Confidence 999998654 8999999999998643 4677788888889999999999999999995 699999999999999999
Q ss_pred CEEEeccCcceEEeCCCCCHHHHHHHHHHHHHHHHHHhCCeeecceEEec
Q 020076 280 GAMVSNIHANFFVNTGGSTSRDMLNLIAFVKEKVDQKFGVQLKEEVQYFH 329 (331)
Q Consensus 280 ga~vS~~HanfivN~g~Ata~dv~~Li~~v~~~V~~~~gi~Le~Ev~~i~ 329 (331)
||+||++|||||||+|+||++||++||++||++|+++|||+||+||++||
T Consensus 238 gA~vs~kHanflIN~g~ATa~Dv~~Li~~Vr~~V~e~fGi~LE~Ev~~Ig 287 (291)
T COG0812 238 GAQVSEKHANFLINTGNATAKDVLDLIEHVRQRVLEKFGIELEPEVKIIG 287 (291)
T ss_pred CEEechhhCcEEEECCCCcHHHHHHHHHHHHHHHHHhhCceeeeeeeeec
Confidence 99999999999999999999999999999999999999999999999998
No 3
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=100.00 E-value=5.6e-87 Score=633.91 Aligned_cols=280 Identities=35% Similarity=0.572 Sum_probs=265.1
Q ss_pred ccccCCCcccccccCCCccccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccccCCCCEEEEEc-CCCceEEcCC
Q 020076 44 FIRRNKLLKDLSTWGIGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDDLGFDGCVILN-RIEFLERKET 122 (331)
Q Consensus 44 ~~~~~~~L~~~tt~~iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d~~~~GvVI~~-~l~~i~~~~~ 122 (331)
.+++|+||++||||+|||+|+++++|+|++||.+++++|++ ++|++++|+|||+|++|.+++|+||++ +++.+++++
T Consensus 15 ~~~~~~~L~~~tt~~iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~~gvVI~l~~~~~i~i~~- 92 (297)
T PRK14653 15 DVFINEEMKCHVSFKIGGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEPMDFVVVSTERLDDIFVDN- 92 (297)
T ss_pred eeccCCcccccCEeeeCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCccEEEEEeCCcCceEEeC-
Confidence 47899999999999999999999999999999999999999 999999999999999999999999998 688887654
Q ss_pred eEEEEcCCCcHHHHHHHHHHcCCCcccCCCCccccchHHHHhhhhccCccccceeeEEEEEeCCCcEEEEecCccccccc
Q 020076 123 GIYRVGSGFRFNSLGMQCCTEGFTGLEFAAGIPGTVGGAVYMNAGANGQETAGVIDSVDIVTLGGKLQRVSRNDLKFGYR 202 (331)
Q Consensus 123 ~~v~v~AG~~l~~L~~~~~~~Gl~GlE~l~gIPgTVGGav~mNaGayG~ei~d~v~sv~vv~~~G~v~~~~~~el~~~YR 202 (331)
..++|+||+.|++|+++|.++||+||||+++||||||||++||||+||.+|+|+|.+|+++| +|++++++++||.|+||
T Consensus 93 ~~v~v~AG~~l~~L~~~~~~~GL~GlE~l~gIPGTVGGAv~mNAGayG~ei~d~l~~V~~~d-~g~v~~~~~~e~~f~YR 171 (297)
T PRK14653 93 DKIICESGLSLKKLCLVAAKNGLSGFENAYGIPGSVGGAVYMNAGAYGWETAENIVEVVAYD-GKKIIRLGKNEIKFSYR 171 (297)
T ss_pred CEEEEeCCCcHHHHHHHHHHCCCcchhhhcCCchhHHHHHHHhCccCchhhheeEEEEEEEC-CCEEEEEchhhccccCc
Confidence 68999999999999999999999999999999999999999999999999999999999999 78999999999999999
Q ss_pred cccccCCCCceEEEEEEEEeEeCChH--HHHHHHHHHHHhcCCCCCCCCeeeeccCCCCCCccHHHHHHHhCCCCeeECC
Q 020076 203 SSSFQDMKDLAAIVAVTFQLQESTSA--RRKQREYLDRRRMTQPLGERTAGSVFRNPSDKEVAAAELIERAGLKGFRVGG 280 (331)
Q Consensus 203 ~s~f~~~g~~gII~~a~lkL~~~~~~--~~~~~~~~~~r~~~qP~~~~saGS~FkNP~~~~~~Ag~LIe~~GlKG~~~Gg 280 (331)
+|.|+++++ +||++|+|+|.+.+++ ...|++.+++|+++||.++||||||||||+. +.+||||||+|||||+|+|+
T Consensus 172 ~S~~~~~~~-~iI~~a~f~L~~~~~~~i~~~~~~~~~~R~~kqP~~~psaGS~FkNP~~-~~~Ag~LIe~~GlKG~~iG~ 249 (297)
T PRK14653 172 NSIFKEEKD-LIILRVTFKLKKGNKNEIYNLMLETMKKRVEKQPLEFPSAGSVFKRPRK-DFYVGSAIEKLGLKGFSIGG 249 (297)
T ss_pred cccCCCCCc-EEEEEEEEEEecCCHHHHHHHHHHHHHHHHhhCCCCCCCccceecCCCC-CCcHHHHHHHcCCCCCccCC
Confidence 999986533 6999999999998754 4678889999999999999999999999972 46999999999999999999
Q ss_pred EEEeccCcceEEeCCCCCHHHHHHHHHHHHHHHHHHhCCeeecceEEe
Q 020076 281 AMVSNIHANFFVNTGGSTSRDMLNLIAFVKEKVDQKFGVQLKEEVQYF 328 (331)
Q Consensus 281 a~vS~~HanfivN~g~Ata~dv~~Li~~v~~~V~~~~gi~Le~Ev~~i 328 (331)
|+||+||||||||.|+||++||++||++||++|+++|||+||+||++|
T Consensus 250 a~vS~kHanfiVN~g~Ata~Dv~~Li~~v~~~V~~~~Gi~Le~Ev~i~ 297 (297)
T PRK14653 250 AQISEKHAGFIINYNNAKAEDVLKLIEYVKDKIYENYNVELETEIEIW 297 (297)
T ss_pred EEEccccCcEEEECCCCCHHHHHHHHHHHHHHHHHHHCCeeeeeeEEC
Confidence 999999999999999999999999999999999999999999999986
No 4
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=100.00 E-value=2.2e-86 Score=637.31 Aligned_cols=284 Identities=37% Similarity=0.559 Sum_probs=262.7
Q ss_pred ccccCCCcccccccCCCccccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccccCCCCEEEEEcCCCceEE---c
Q 020076 44 FIRRNKLLKDLSTWGIGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDDLGFDGCVILNRIEFLER---K 120 (331)
Q Consensus 44 ~~~~~~~L~~~tt~~iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d~~~~GvVI~~~l~~i~~---~ 120 (331)
++++++||++||||+|||+|++++.|+|+|||++++++|+++++|++++|+|||+|++| +++|+||.++++.+++ +
T Consensus 2 ~~~~~~~L~~~tt~riGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~~~g~vI~~~~~~~~~~~~~ 80 (334)
T PRK00046 2 QLQMNHSLKPLNTFGIDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-DFDGTVLLNRIKGIEVLSED 80 (334)
T ss_pred CcccCCcccccceeccCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-CCCEEEEEecCCceEEEecC
Confidence 57789999999999999999999999999999999999999999999999999999999 7999999877777766 2
Q ss_pred CC-eEEEEcCCCcHHHHHHHHHHcCCCcccCCCCccccchHHHHhhhhccCccccceeeEEEEEeCC-CcEEEEecCccc
Q 020076 121 ET-GIYRVGSGFRFNSLGMQCCTEGFTGLEFAAGIPGTVGGAVYMNAGANGQETAGVIDSVDIVTLG-GKLQRVSRNDLK 198 (331)
Q Consensus 121 ~~-~~v~v~AG~~l~~L~~~~~~~Gl~GlE~l~gIPgTVGGav~mNaGayG~ei~d~v~sv~vv~~~-G~v~~~~~~el~ 198 (331)
++ ..|+|+||+.|++|+++|.++||+|+||++|||||||||++|||||||.+|+|+|.+|+++|.+ |++++++++||.
T Consensus 81 ~~~~~v~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mNaGayG~ei~d~l~~V~v~d~~~g~~~~~~~~e~~ 160 (334)
T PRK00046 81 DDAWYLHVGAGENWHDLVLWTLQQGMPGLENLALIPGTVGAAPIQNIGAYGVELKDVCDYVEALDLATGEFVRLSAAECR 160 (334)
T ss_pred CCeEEEEEEcCCcHHHHHHHHHHcCchhhHHhcCCCcchhHHHHhcCCcCcccHheeEEEEEEEECCCCcEEEEEHHHcC
Confidence 22 3899999999999999999999999999999999999999999999999999999999999987 999999999999
Q ss_pred cccccccccCC-CCceEEEEEEEEeEeC--------Ch---------HHHHHHHHHHHHhcCCC--CCCCCeeeeccCCC
Q 020076 199 FGYRSSSFQDM-KDLAAIVAVTFQLQES--------TS---------ARRKQREYLDRRRMTQP--LGERTAGSVFRNPS 258 (331)
Q Consensus 199 ~~YR~s~f~~~-g~~gII~~a~lkL~~~--------~~---------~~~~~~~~~~~r~~~qP--~~~~saGS~FkNP~ 258 (331)
|+||+|.|++. .+.+||++|+|+|.+. +. .++.|+..+++|+.+|| .++||||||||||.
T Consensus 161 f~YR~S~f~~~~~~~~iVl~a~f~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~k~P~p~~~psaGS~FkNP~ 240 (334)
T PRK00046 161 FGYRDSIFKHEYPDRYAITAVGFRLPKQWQPVLDYGDLARLDPDTVTAQDVFDAVCAIRRSKLPDPKVLGNAGSFFKNPV 240 (334)
T ss_pred cccccccCCCCCcCCEEEEEEEEEecCCCCccccccCHhhhcccCCCHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCC
Confidence 99999999853 1247999999999997 43 34567788888998898 99999999999996
Q ss_pred -----------------C-------CCccHHHHHHHhCCCCeeECCEEEeccCcceEEeCCCCCHHHHHHHHHHHHHHHH
Q 020076 259 -----------------D-------KEVAAAELIERAGLKGFRVGGAMVSNIHANFFVNTGGSTSRDMLNLIAFVKEKVD 314 (331)
Q Consensus 259 -----------------~-------~~~~Ag~LIe~~GlKG~~~Gga~vS~~HanfivN~g~Ata~dv~~Li~~v~~~V~ 314 (331)
. .+.+||||||+|||||+|+|+|+||+||||||||.|+||++||++||++||++|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~Ag~LIe~~GLKG~~iG~A~VS~kHanfIVN~G~Ata~Di~~Li~~v~~~V~ 320 (334)
T PRK00046 241 VSAEQFEALLAQYPDIPHYPQADGSVKLAAGWLIDQCGLKGFQIGGAAVHEKQALVLVNYGNATGADVLALARHIQQDVR 320 (334)
T ss_pred CcHHHHHHHHhhcCCCCCcccCCCceeeeHHHHHHHcCCCCCccCCEEEccccCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 1 1259999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeeecceEEe
Q 020076 315 QKFGVQLKEEVQYF 328 (331)
Q Consensus 315 ~~~gi~Le~Ev~~i 328 (331)
++|||+||+||++|
T Consensus 321 e~fGI~Le~Ev~~i 334 (334)
T PRK00046 321 EKFGVELEPEPRFI 334 (334)
T ss_pred HHHCCeeeEEeEEC
Confidence 99999999999986
No 5
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=100.00 E-value=5.2e-86 Score=635.00 Aligned_cols=286 Identities=30% Similarity=0.471 Sum_probs=265.7
Q ss_pred ccccCCCcccccccCCCccccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccccCCCCEEEEEc-CCCceEE---
Q 020076 44 FIRRNKLLKDLSTWGIGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDDLGFDGCVILN-RIEFLER--- 119 (331)
Q Consensus 44 ~~~~~~~L~~~tt~~iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d~~~~GvVI~~-~l~~i~~--- 119 (331)
.+++|+||++||||+|||+|++++.|+|.+||++++++|+++++|++++|+|||+|++|.+++|+||.+ +++.+++
T Consensus 11 ~~~~~~~La~~tT~rIGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~D~g~~G~VI~l~~~~~i~i~~~ 90 (354)
T PRK14648 11 ITRRNVPLAERCSFRIGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIADEGVPGLMLSLRRFRSLHTQTQ 90 (354)
T ss_pred eeecCCCccccceeeeCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEeCCCccEEEEEeCCcCceEEeec
Confidence 567899999999999999999999999999999999999999999999999999999999999999997 6777764
Q ss_pred cCC-eEEEEcCCCcHHHHHHHHHHcCCCcccCCCCccccchHHHHhhhhccCccccceeeEEEEE---------------
Q 020076 120 KET-GIYRVGSGFRFNSLGMQCCTEGFTGLEFAAGIPGTVGGAVYMNAGANGQETAGVIDSVDIV--------------- 183 (331)
Q Consensus 120 ~~~-~~v~v~AG~~l~~L~~~~~~~Gl~GlE~l~gIPgTVGGav~mNaGayG~ei~d~v~sv~vv--------------- 183 (331)
.++ ..|+|+||+.|++|+++|.++||+||||++|||||||||++|||||||.||+|+|.+|+++
T Consensus 91 ~~~~~~v~agAG~~~~~Lv~~~~~~gl~GlE~laGIPGTVGGAv~mNAGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~~ 170 (354)
T PRK14648 91 RDGSVLVHAGAGLPVAALLAFCAHHALRGLETFAGLPGSVGGAAYMNARCYGRAIADCFHSARTLVLHPVRSRAKELPEV 170 (354)
T ss_pred cCCcEEEEEEeCCcHHHHHHHHHHcCCcchhhhcCCCcchhhHhhhcCCccceEhhheEEEEEEEeccCccccccccccc
Confidence 233 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred -----eCCCcE-------------EEEecCccccccccccccCC------CCceEEEEEEEEeEeCChH--HHHHHHHHH
Q 020076 184 -----TLGGKL-------------QRVSRNDLKFGYRSSSFQDM------KDLAAIVAVTFQLQESTSA--RRKQREYLD 237 (331)
Q Consensus 184 -----~~~G~v-------------~~~~~~el~~~YR~s~f~~~------g~~gII~~a~lkL~~~~~~--~~~~~~~~~ 237 (331)
+.+|++ ++++++||.|+||+|.|++. .+.+||++|+|+|.++++. .+.|++.++
T Consensus 171 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~~~~i~~~m~~~~~ 250 (354)
T PRK14648 171 RKNAQDKRGECLGLDGGPFTCSSFQTVFARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGNPAQIRKHMQEKIA 250 (354)
T ss_pred ccccccCCCceecccccccccccceEecHHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCCHHHHHHHHHHHHH
Confidence 456776 78999999999999999852 1147999999999998754 456888999
Q ss_pred HHhcCCCCCCCCeeeeccCCCCCCccHHHHHHHhCCCCeeECCEEEeccCcceEEeCCCCCHHHHHHHHHHHHHHHHHHh
Q 020076 238 RRRMTQPLGERTAGSVFRNPSDKEVAAAELIERAGLKGFRVGGAMVSNIHANFFVNTGGSTSRDMLNLIAFVKEKVDQKF 317 (331)
Q Consensus 238 ~r~~~qP~~~~saGS~FkNP~~~~~~Ag~LIe~~GlKG~~~Gga~vS~~HanfivN~g~Ata~dv~~Li~~v~~~V~~~~ 317 (331)
+|+++||.++||||||||||+..+.+||||||+|||||+++|+|+||++|||||||.|+||++||++||++||++|+++|
T Consensus 251 ~R~~kqP~~~psaGS~FKNP~~~~~~AG~LIe~~GLKG~riG~A~VS~kHAnfIVN~G~Ata~Dvl~Li~~v~~~V~ekf 330 (354)
T PRK14648 251 DRISKGQFRFPSAGSAFKNNPAFGKPSGILIEEAGLRGTSCGAAQVAPWHGNLIINTGNATAHQVRTLLRVVRQRVFETH 330 (354)
T ss_pred HHHHcCcCCCCCcceeEeCcCCCCCcHHHHHHHcCCCCCccCCEEEccccCcEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999843579999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeecceEEec
Q 020076 318 GVQLKEEVQYFH 329 (331)
Q Consensus 318 gi~Le~Ev~~i~ 329 (331)
||+||+||+++|
T Consensus 331 GI~Le~EV~iig 342 (354)
T PRK14648 331 GVWLEREIIFSG 342 (354)
T ss_pred CCeeeEeeEEeC
Confidence 999999999997
No 6
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=100.00 E-value=2.2e-85 Score=623.76 Aligned_cols=283 Identities=33% Similarity=0.591 Sum_probs=263.3
Q ss_pred ccccCCCcccccccCCCccccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccccCCCCEEEEEcCC-C-ceEEcC
Q 020076 44 FIRRNKLLKDLSTWGIGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDDLGFDGCVILNRI-E-FLERKE 121 (331)
Q Consensus 44 ~~~~~~~L~~~tt~~iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d~~~~GvVI~~~l-~-~i~~~~ 121 (331)
.+++|+||++||||+|||+|+++++|+|++||.+++++|+++++|++++|+|||++++|.+++|+||+++. . .+..+.
T Consensus 2 ~~~~~~~L~~~tt~~iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g~~GvVI~l~~~~~~i~~~~ 81 (295)
T PRK14649 2 TLRENEPLAPYTSWRIGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEGFDGLVARYRGQRWELHEHG 81 (295)
T ss_pred ccccCCccccccEeeeCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCCcCeEEEEecCCCcEEEEeC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999843 3 444443
Q ss_pred C-eEEEEcCCCcHHHHHHHHHHcCCCcccCCCCccccchHHHHhhhhccCccccceeeEEEEEeCCCcEEEEecCccccc
Q 020076 122 T-GIYRVGSGFRFNSLGMQCCTEGFTGLEFAAGIPGTVGGAVYMNAGANGQETAGVIDSVDIVTLGGKLQRVSRNDLKFG 200 (331)
Q Consensus 122 ~-~~v~v~AG~~l~~L~~~~~~~Gl~GlE~l~gIPgTVGGav~mNaGayG~ei~d~v~sv~vv~~~G~v~~~~~~el~~~ 200 (331)
+ ..|+|+||+.|++|+++|.++||+|+||++|||||||||++||||+||.+++|+|++|++++.+|++++++++||+|+
T Consensus 82 ~~~~v~v~AG~~~~~l~~~~~~~GL~GlE~l~GIPGTvGGa~~mNaGayg~ei~d~l~~V~~~~~~g~~~~~~~~el~f~ 161 (295)
T PRK14649 82 DTAEVWVEAGAPMAGTARRLAAQGWAGLEWAEGLPGTIGGAIYGNAGCYGGDTATVLIRAWLLLNGSECVEWSVHDFAYG 161 (295)
T ss_pred CcEEEEEEcCCcHHHHHHHHHHcCCccccccCCCCcchhHHHHhhccccceEhheeEEEEEEEeCCCCEEEEeHHHcCcc
Confidence 3 389999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCC-C-----ceEEEEEEEEeEeCChH--HHHHHHHHHHHhcCCCCCCCCeeeeccCCCCCCccHHHHHHHhC
Q 020076 201 YRSSSFQDMK-D-----LAAIVAVTFQLQESTSA--RRKQREYLDRRRMTQPLGERTAGSVFRNPSDKEVAAAELIERAG 272 (331)
Q Consensus 201 YR~s~f~~~g-~-----~gII~~a~lkL~~~~~~--~~~~~~~~~~r~~~qP~~~~saGS~FkNP~~~~~~Ag~LIe~~G 272 (331)
||+|.|++.. . .+||++++|+|.+.++. ...|++.+++|+.+||. .||||||||||++ .+||||||+||
T Consensus 162 YR~S~~~~~~~~~~~~~~~ii~~~~~~l~~~~~~~i~~~~~~~~~~R~~kqP~-~~saGS~FkNP~~--~~Ag~LIe~~G 238 (295)
T PRK14649 162 YRTSVLKQLRADGITWRPPLVLAARFRLHRDDPTALAARMEAIAAERKQKTPA-GSSCGSVFKNPPG--DSAGRLIEAAG 238 (295)
T ss_pred cceeecccccccccccCCeEEEEEEEEECCCCHHHHHHHHHHHHHHHHHcCcC-CCCeEEEEeCCCc--ccHHHHHHHcC
Confidence 9999998531 1 36999999999998754 46678899999999998 7999999999984 69999999999
Q ss_pred CCCeeECCEEEeccCcceEEeCCCCCHHHHHHHHHHHHHHHHHHhCCeeecceEEec
Q 020076 273 LKGFRVGGAMVSNIHANFFVNTGGSTSRDMLNLIAFVKEKVDQKFGVQLKEEVQYFH 329 (331)
Q Consensus 273 lKG~~~Gga~vS~~HanfivN~g~Ata~dv~~Li~~v~~~V~~~~gi~Le~Ev~~i~ 329 (331)
|||+++|+|+||+||||||||+|+||++||++||++||++|+++|||+||+||+++|
T Consensus 239 lKG~~~G~a~vS~kHanfivN~g~Ata~di~~Li~~v~~~V~~~~Gi~Le~Ev~iig 295 (295)
T PRK14649 239 LKGTRIGDAEIATRHANYIINLGGARAADILRLIDLARTRVLAQFGIELELEVRIIG 295 (295)
T ss_pred CCCCcccCEEEccccCcEEEECCCCCHHHHHHHHHHHHHHHHHHHCCeeeEEeEEcC
Confidence 999999999999999999999999999999999999999999999999999999986
No 7
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=100.00 E-value=9.9e-85 Score=622.22 Aligned_cols=281 Identities=32% Similarity=0.551 Sum_probs=267.9
Q ss_pred ccccCCCcccccccCCCccccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccccCCCCEEEEEc-CCCceEEcCC
Q 020076 44 FIRRNKLLKDLSTWGIGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDDLGFDGCVILN-RIEFLERKET 122 (331)
Q Consensus 44 ~~~~~~~L~~~tt~~iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d~~~~GvVI~~-~l~~i~~~~~ 122 (331)
.++.++||++||||++||+|+++++|+|+|||++++++|+++++|++++|+|||++++|.+++|+||++ +|+.+++++
T Consensus 18 ~v~~~~~L~~~tt~~iGG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~d~g~~GvvI~l~~l~~i~~~~- 96 (307)
T PRK13906 18 KIKVDEPLKRYTYTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGIRGIVISLLSLDHIEVSD- 96 (307)
T ss_pred eeecCCccccceEcCcCceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeecCCCcceEEEEecCccceEEeC-
Confidence 477889999999999999999999999999999999999999999999999999999999999999998 788887654
Q ss_pred eEEEEcCCCcHHHHHHHHHHcCCCcccCCCCccccchHHHHhhhhccCccccceeeEEEEEeCCCcEEEEecCccccccc
Q 020076 123 GIYRVGSGFRFNSLGMQCCTEGFTGLEFAAGIPGTVGGAVYMNAGANGQETAGVIDSVDIVTLGGKLQRVSRNDLKFGYR 202 (331)
Q Consensus 123 ~~v~v~AG~~l~~L~~~~~~~Gl~GlE~l~gIPgTVGGav~mNaGayG~ei~d~v~sv~vv~~~G~v~~~~~~el~~~YR 202 (331)
.+++|+||+.|.+|++++.++||+|+|++++||||||||++||||+||.+++|+|.+|+++|++|++++++++||.|+||
T Consensus 97 ~~v~v~aG~~~~~l~~~~~~~Gl~GlE~~~gIPGtVGGav~mNaGayGg~i~D~l~~v~vv~~~G~~~~~~~~e~~f~YR 176 (307)
T PRK13906 97 DAIIAGSGAAIIDVSRVARDYALTGLEFACGIPGSIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLTTKELELDYR 176 (307)
T ss_pred CEEEEECCCcHHHHHHHHHHcCCccchhhcCCCccHhHHHHhhCCcchhhhhhheeEEEEEeCCCCEEEEEHHHccCcCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCceEEEEEEEEeEeCChH--HHHHHHHHHHHhcCCCCCCCCeeeeccCCCCCCccHHHHHHHhCCCCeeECC
Q 020076 203 SSSFQDMKDLAAIVAVTFQLQESTSA--RRKQREYLDRRRMTQPLGERTAGSVFRNPSDKEVAAAELIERAGLKGFRVGG 280 (331)
Q Consensus 203 ~s~f~~~g~~gII~~a~lkL~~~~~~--~~~~~~~~~~r~~~qP~~~~saGS~FkNP~~~~~~Ag~LIe~~GlKG~~~Gg 280 (331)
+|.|++. .+||++|+|+|.+.+++ .+.|++.+++|+++||.++||||||||||++ .+||||||+|||||+|+|+
T Consensus 177 ~S~~~~~--~~ii~~~~~~l~~~~~~~i~~~~~~~~~~R~~~qP~~~psaGS~FkNP~~--~~ag~LIe~~GlkG~~iG~ 252 (307)
T PRK13906 177 NSIIQKE--HLVVLEAAFTLAPGKMTEIQAKMDDLTERRESKQPLEYPSCGSVFQRPPG--HFAGKLIQDSNLQGHRIGG 252 (307)
T ss_pred cccCCCC--CEEEEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCCCCCCccceecCCCC--CchHHHHHHcCCCCCccCC
Confidence 9999853 38999999999998754 5678889999999999999999999999984 6999999999999999999
Q ss_pred EEEeccCcceEEeCCCCCHHHHHHHHHHHHHHHHHHhCCeeecceEEec
Q 020076 281 AMVSNIHANFFVNTGGSTSRDMLNLIAFVKEKVDQKFGVQLKEEVQYFH 329 (331)
Q Consensus 281 a~vS~~HanfivN~g~Ata~dv~~Li~~v~~~V~~~~gi~Le~Ev~~i~ 329 (331)
|+||+||||||||.|+||++||++||++||++|+++|||+||+||+++|
T Consensus 253 a~vS~kHanfivN~g~At~~di~~Li~~v~~~V~~~~gi~Le~Ev~~~g 301 (307)
T PRK13906 253 VEVSTKHAGFMVNVDNGTATDYENLIHYVQKTVKEKFGIELNREVRIIG 301 (307)
T ss_pred EEEccccccEEEECCCCCHHHHHHHHHHHHHHHHHHHCCEeeEeeEEEc
Confidence 9999999999999999999999999999999999999999999999997
No 8
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=100.00 E-value=1.4e-84 Score=620.02 Aligned_cols=278 Identities=36% Similarity=0.578 Sum_probs=263.1
Q ss_pred cccCCCcccccccCCCccccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccccCCCCEEEEEc-C-CCceEEcCC
Q 020076 45 IRRNKLLKDLSTWGIGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDDLGFDGCVILN-R-IEFLERKET 122 (331)
Q Consensus 45 ~~~~~~L~~~tt~~iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d~~~~GvVI~~-~-l~~i~~~~~ 122 (331)
+++|+||++||||++||+|+++++|+|+|||++++++|+++++|++++|+|||++++|.+++|+||++ + +..+..+ +
T Consensus 18 ~~~~~~l~~~tt~~igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~g~~gvVI~l~~~~~~i~~~-~ 96 (302)
T PRK14652 18 VLRDAPLAPRTAVRVGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADAGVRGVVLRLPQDFPGESTD-G 96 (302)
T ss_pred cccCCCcccccEeecCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeecCCCEeeEEEEecCCcceEEec-C
Confidence 78999999999999999999999999999999999999999999999999999999999999999998 4 4445443 4
Q ss_pred eEEEEcCCCcHHHHHHHHHHcCCCcccCCCCccccchHHHHhhhhccCccccceeeEEEEEeCCCcEEEEecCccccccc
Q 020076 123 GIYRVGSGFRFNSLGMQCCTEGFTGLEFAAGIPGTVGGAVYMNAGANGQETAGVIDSVDIVTLGGKLQRVSRNDLKFGYR 202 (331)
Q Consensus 123 ~~v~v~AG~~l~~L~~~~~~~Gl~GlE~l~gIPgTVGGav~mNaGayG~ei~d~v~sv~vv~~~G~v~~~~~~el~~~YR 202 (331)
..++|+||+.|.+|+++|.++||+|+||+++||||||||++||||+||.+++|+|.+|+++|++| +.+++++||.|+||
T Consensus 97 ~~v~v~AG~~~~~L~~~~~~~GL~GlE~l~gIPGTvGGav~mNaGa~ggei~d~v~~v~vv~~~G-~~~~~~~e~~f~YR 175 (302)
T PRK14652 97 GRLVLGAGAPISRLPARAHAHGLVGMEFLAGIPGTLGGAVAMNAGTKLGEMKDVVTAVELATADG-AGFVPAAALGYAYR 175 (302)
T ss_pred CEEEEECCCcHHHHHHHHHHcCCcccccccCCCcchhHHHHHcCCCCceEhhheEEEEEEECCCC-cEEeehhhcCcccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999 77889999999999
Q ss_pred cccccCCCCceEEEEEEEEeEeCChH--HHHHHHHHHHHhcCCCCCCCCeeeeccCCCCCCccHHHHHHHhCCCCeeECC
Q 020076 203 SSSFQDMKDLAAIVAVTFQLQESTSA--RRKQREYLDRRRMTQPLGERTAGSVFRNPSDKEVAAAELIERAGLKGFRVGG 280 (331)
Q Consensus 203 ~s~f~~~g~~gII~~a~lkL~~~~~~--~~~~~~~~~~r~~~qP~~~~saGS~FkNP~~~~~~Ag~LIe~~GlKG~~~Gg 280 (331)
+|.|++ + +||++|+|+|.|.+.+ ++.|++.+++|+++||.++||||||||||++ .+||||||+|||||+|+|+
T Consensus 176 ~s~~~~-~--~II~~a~~~L~~~~~~~i~~~~~~~~~~R~~~qP~~~psaGS~FkNP~~--~~Ag~LIe~~GlkG~~~G~ 250 (302)
T PRK14652 176 TCRLPP-G--AVITRVEVRLRPGDVAASEALMRADRERRRRTQPLDRPTFGSTFTNPPG--DYAGRLVEAVGLKGHRVGG 250 (302)
T ss_pred eeccCC-C--eEEEEEEEEEecCCHHHHHHHHHHHHHHHHhcCCCCCCCccceeeCcCC--ccHHHHHHHcCCCCCccCC
Confidence 999974 2 8999999999998864 5678889999999999999999999999984 6999999999999999999
Q ss_pred EEEeccCcceEEeCCCCCHHHHHHHHHHHHHHHHHHhCCeeecceEEec
Q 020076 281 AMVSNIHANFFVNTGGSTSRDMLNLIAFVKEKVDQKFGVQLKEEVQYFH 329 (331)
Q Consensus 281 a~vS~~HanfivN~g~Ata~dv~~Li~~v~~~V~~~~gi~Le~Ev~~i~ 329 (331)
|+||+||||||||.|+||++||++||++||++|+++|||+||+||+++|
T Consensus 251 a~vS~kHanfivN~g~ata~di~~Li~~v~~~V~~~~gi~Le~Ev~~~g 299 (302)
T PRK14652 251 AIWSPVHANFVTNLGGATARDVLALVRLARARVKERFGIALETEVRLLG 299 (302)
T ss_pred EEEcccccCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCeeeEeeEEec
Confidence 9999999999999999999999999999999999999999999999997
No 9
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=100.00 E-value=5.2e-84 Score=627.49 Aligned_cols=289 Identities=32% Similarity=0.478 Sum_probs=266.8
Q ss_pred hhcccccccCCCcccccccCCCccccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccccCCCCEEEEEcCCCceE
Q 020076 39 WNGLKFIRRNKLLKDLSTWGIGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDDLGFDGCVILNRIEFLE 118 (331)
Q Consensus 39 ~~~~~~~~~~~~L~~~tt~~iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d~~~~GvVI~~~l~~i~ 118 (331)
+.+| .+++|+||++||||+|||+|+++++|+|++||.+++++|+++++|++|+|+|||++++|.+++|+||+++++.++
T Consensus 10 ~~~~-~~~~~~~L~~~tt~~iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~g~~GvVI~l~~~~i~ 88 (363)
T PRK13903 10 FAGA-EVAEDVPLAPLTTLRVGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIADDGFDGTVVRVATRGVT 88 (363)
T ss_pred ccCc-EeeCCCCcccccEeecCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCCCccEEEEEeCCCcEE
Confidence 4455 488999999999999999999999999999999999999999999999999999999999999999998767777
Q ss_pred Ec-CCeEEEEcCCCcHHHHHHHHHHcCCCcccCCCCccccchHHHHhhhhccCccccceeeEEEEEeCC-CcEEEEecCc
Q 020076 119 RK-ETGIYRVGSGFRFNSLGMQCCTEGFTGLEFAAGIPGTVGGAVYMNAGANGQETAGVIDSVDIVTLG-GKLQRVSRND 196 (331)
Q Consensus 119 ~~-~~~~v~v~AG~~l~~L~~~~~~~Gl~GlE~l~gIPgTVGGav~mNaGayG~ei~d~v~sv~vv~~~-G~v~~~~~~e 196 (331)
++ ++.+|+|+||+.|.+|+++|.++||+|||+++|||||||||++||||+||.+++|+|.+|+++|.+ |++++++++|
T Consensus 89 i~~~~~~v~vgAG~~~~~l~~~a~~~GL~GlE~laGIPGTVGGAv~mNaGayG~ei~D~l~sV~vvd~~~G~~~~~~~~e 168 (363)
T PRK13903 89 VDCGGGLVRAEAGAVWDDVVARTVEAGLGGLECLSGIPGSAGATPVQNVGAYGQEVSDTITRVRLLDRRTGEVRWVPAAD 168 (363)
T ss_pred EeCCCCEEEEEcCCCHHHHHHHHHHcCCccccccCCCCcchhhHhhcCCChhHHHHhhhEeEEEEEECCCCEEEEEEHHH
Confidence 65 246899999999999999999999999999999999999999999999999999999999999965 9999999999
Q ss_pred cccccccccccCCCCceEEEEEEEEeEeCCh----------------------HHHHHHHHHHHHhcCCC------CCCC
Q 020076 197 LKFGYRSSSFQDMKDLAAIVAVTFQLQESTS----------------------ARRKQREYLDRRRMTQP------LGER 248 (331)
Q Consensus 197 l~~~YR~s~f~~~g~~gII~~a~lkL~~~~~----------------------~~~~~~~~~~~r~~~qP------~~~~ 248 (331)
|.|+||+|.|++. +++||++++|+|.+.+. ..+.++..++.|+++|| .++|
T Consensus 169 l~f~YR~S~f~~~-~~~IIl~a~f~L~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~R~~kqplpdP~~~~~p 247 (363)
T PRK13903 169 LGFGYRTSVLKHS-DRAVVLEVEFQLDPSGLSAPLRYGELARALGVEPGERVPPAAVREAVLALRAGKGMVLDPADHDTW 247 (363)
T ss_pred cceeccccccCCC-CCEEEEEEEEEEEcCCcccccchHHHHhhhhhccccchhHHHHHHHHHHHHHhcCCCCCcccCCCC
Confidence 9999999999853 46899999999998751 24567778889999987 5789
Q ss_pred CeeeeccCC----------------------CC-------CCccHHHHHHHhCC-CCe--eECCEEEeccCcceEEeCCC
Q 020076 249 TAGSVFRNP----------------------SD-------KEVAAAELIERAGL-KGF--RVGGAMVSNIHANFFVNTGG 296 (331)
Q Consensus 249 saGS~FkNP----------------------~~-------~~~~Ag~LIe~~Gl-KG~--~~Gga~vS~~HanfivN~g~ 296 (331)
||||||||| +. .|.+||||||+||| ||+ |+|+|+||+||||||||+|+
T Consensus 248 saGS~FKNP~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~Ag~LIe~~Gl~KG~~~~iG~a~vS~kHanfiVN~G~ 327 (363)
T PRK13903 248 SAGSFFTNPVVSPAVAERLAARVAERLGDPVPRYPAGDGGVKLSAAWLIERAGFGKGYPGGGAPARLSTKHTLALTNRGG 327 (363)
T ss_pred CceeeEeCCCCCHHHHHHHHHhhccccCCCCCCccCCCCceeeeHHHHHHHhCcccCCcCccCCEEEccccCcEEEECCC
Confidence 999999999 32 13599999999999 999 99999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCeeecceEEec
Q 020076 297 STSRDMLNLIAFVKEKVDQKFGVQLKEEVQYFH 329 (331)
Q Consensus 297 Ata~dv~~Li~~v~~~V~~~~gi~Le~Ev~~i~ 329 (331)
||++||++||+.||++|+++|||+||+||+++|
T Consensus 328 Ata~dvl~Li~~v~~~V~~~fGi~Le~Ev~iig 360 (363)
T PRK13903 328 ATTADLVALAREVRDGVRDAFGVTLVPEPVLVG 360 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCeeeEeeEEEe
Confidence 999999999999999999999999999999997
No 10
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=100.00 E-value=1.2e-83 Score=614.36 Aligned_cols=281 Identities=33% Similarity=0.579 Sum_probs=267.2
Q ss_pred ccccCCCcccccccCCCccccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccccCCCCEEEEEc-CCCceEEcCC
Q 020076 44 FIRRNKLLKDLSTWGIGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDDLGFDGCVILN-RIEFLERKET 122 (331)
Q Consensus 44 ~~~~~~~L~~~tt~~iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d~~~~GvVI~~-~l~~i~~~~~ 122 (331)
.++.++||++||||++||+|+++++|+|++||++++++|+++++|++++|+|||++++|.+++|+||++ +++.++++ +
T Consensus 18 ~~~~~~~l~~~tt~~igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g~~GvvI~l~~l~~i~~~-~ 96 (305)
T PRK12436 18 HVKQDEMLKNHTHIKVGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGGIRGITVSLIHITGVTVT-G 96 (305)
T ss_pred ceecCCcchhccCcccCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCCeeEEEEEeCCcCcEEEe-C
Confidence 366789999999999999999999999999999999999999999999999999999999999999998 68887765 4
Q ss_pred eEEEEcCCCcHHHHHHHHHHcCCCcccCCCCccccchHHHHhhhhccCccccceeeEEEEEeCCCcEEEEecCccccccc
Q 020076 123 GIYRVGSGFRFNSLGMQCCTEGFTGLEFAAGIPGTVGGAVYMNAGANGQETAGVIDSVDIVTLGGKLQRVSRNDLKFGYR 202 (331)
Q Consensus 123 ~~v~v~AG~~l~~L~~~~~~~Gl~GlE~l~gIPgTVGGav~mNaGayG~ei~d~v~sv~vv~~~G~v~~~~~~el~~~YR 202 (331)
..++|+||+.|.+|++++.++||+|+|++++||||||||++||||+||.+++|++.++++++++|++++++++||.|+||
T Consensus 97 ~~v~v~aG~~~~~L~~~~~~~gl~Gle~~~giPGtVGGav~~NAGayG~~~~dvl~~v~vv~~~G~v~~~~~~e~~f~YR 176 (305)
T PRK12436 97 TTIVAQCGAAIIDVSRIALDHNLTGLEFACGIPGSVGGALYMNAGAYGGEISFVLTEAVVMTGDGELRTLTKEAFEFGYR 176 (305)
T ss_pred CEEEEEeCCcHHHHHHHHHHcCCccchhhcCCccchhHHHHhcCccchhehheeeeEEEEEeCCCCEEEEEHHHhcCcCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCceEEEEEEEEeEeCChH--HHHHHHHHHHHhcCCCCCCCCeeeeccCCCCCCccHHHHHHHhCCCCeeECC
Q 020076 203 SSSFQDMKDLAAIVAVTFQLQESTSA--RRKQREYLDRRRMTQPLGERTAGSVFRNPSDKEVAAAELIERAGLKGFRVGG 280 (331)
Q Consensus 203 ~s~f~~~g~~gII~~a~lkL~~~~~~--~~~~~~~~~~r~~~qP~~~~saGS~FkNP~~~~~~Ag~LIe~~GlKG~~~Gg 280 (331)
+|.|+. +.+||++|+|+|.++++. +++|++++++|+++||.++||||||||||++ .+||||||+|||||+|+|+
T Consensus 177 ~s~~~~--~~~iil~a~~~l~~~~~~~i~~~~~~~~~~R~~~qP~~~ps~GS~FknP~~--~~ag~LIe~~GlkG~~iG~ 252 (305)
T PRK12436 177 KSVFAN--NHYIILEARFELEEGVYEEIKAKMDDLTFKRESKQPLEYPSCGSVFKRPPN--NFAGKLIQESGLQGKRIGG 252 (305)
T ss_pred CCcCCC--CCEEEEEEEEEEcCCCHHHHHHHHHHHHHHHHhhCCCCCCccceeeeCCCC--CcHHHHHHHhCCCCCcccC
Confidence 999974 348999999999998754 4668889999999999999999999999984 6999999999999999999
Q ss_pred EEEeccCcceEEeCCCCCHHHHHHHHHHHHHHHHHHhCCeeecceEEec
Q 020076 281 AMVSNIHANFFVNTGGSTSRDMLNLIAFVKEKVDQKFGVQLKEEVQYFH 329 (331)
Q Consensus 281 a~vS~~HanfivN~g~Ata~dv~~Li~~v~~~V~~~~gi~Le~Ev~~i~ 329 (331)
|+||++|||||||.|+||++||++||++||++|+++|||+||+||+++|
T Consensus 253 a~vS~~HanfivN~g~ata~di~~Li~~v~~~V~~~~gi~Le~Ev~~~g 301 (305)
T PRK12436 253 VEVSLKHAGFMVNVDNGTAQDYIDLIHFVQKTVEEKFGVKLEREVRIIG 301 (305)
T ss_pred EEEccccccEEEECCCCCHHHHHHHHHHHHHHHHHHHCCeeeEeeEEec
Confidence 9999999999999999999999999999999999999999999999998
No 11
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=100.00 E-value=3.1e-83 Score=606.46 Aligned_cols=276 Identities=38% Similarity=0.554 Sum_probs=259.0
Q ss_pred cccccccCCCccccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccccCCCCEEEEEc-CCCceEEcCCeEEEEcC
Q 020076 51 LKDLSTWGIGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDDLGFDGCVILN-RIEFLERKETGIYRVGS 129 (331)
Q Consensus 51 L~~~tt~~iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d~~~~GvVI~~-~l~~i~~~~~~~v~v~A 129 (331)
|++||||++||+|+++++|+|++||++++++|+++++|++++|+|||++++|.+++|+||++ ++..+.++++.+++|+|
T Consensus 1 l~~~tt~~igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~~~gvvi~l~~~~~~~~~~~~~v~v~a 80 (284)
T TIGR00179 1 LAEFTTYKIGGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDGRGGVIINLGKGIDIEDDEGEYVHVGG 80 (284)
T ss_pred CCCcceeecCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCCcCeEEEECCCCceEEEecCCEEEEEc
Confidence 78999999999999999999999999999999999999999999999999999899999998 56665555567899999
Q ss_pred CCcHHHHHHHHHHcCCCcccCCCCccccchHHHHhhhhccCccccceeeEEEEEeCCCcEEEEecCccccccccccccCC
Q 020076 130 GFRFNSLGMQCCTEGFTGLEFAAGIPGTVGGAVYMNAGANGQETAGVIDSVDIVTLGGKLQRVSRNDLKFGYRSSSFQDM 209 (331)
Q Consensus 130 G~~l~~L~~~~~~~Gl~GlE~l~gIPgTVGGav~mNaGayG~ei~d~v~sv~vv~~~G~v~~~~~~el~~~YR~s~f~~~ 209 (331)
|+.|.+|+++|.++||+|+|++++||||||||++||||+||.+++|+|++|++++++|++++++++||.|+||+|.|++.
T Consensus 81 G~~~~~l~~~~~~~Gl~GlE~l~giPGtvGGai~mNAGayG~~i~d~l~~v~vv~~~G~~~~~~~~~~~f~YR~S~f~~~ 160 (284)
T TIGR00179 81 GENWHKLVKYALKNGLSGLEFLAGIPGTVGGAVIMNAGAYGVEISEVLVYATILLATGKTEWLTNEQLGFGYRTSIFQHK 160 (284)
T ss_pred CCcHHHHHHHHHHCCCcccccCCCCCchHHHHHHHhcccchhehhheEEEEEEEeCCCCEEEEEHHHccccCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999852
Q ss_pred CCceEEEEEEEEe-----EeCChH--HHHHHHHHHHHhcCCCCCCCCeeeeccCCCCCCccHHHHHHHhCCCCeeECCEE
Q 020076 210 KDLAAIVAVTFQL-----QESTSA--RRKQREYLDRRRMTQPLGERTAGSVFRNPSDKEVAAAELIERAGLKGFRVGGAM 282 (331)
Q Consensus 210 g~~gII~~a~lkL-----~~~~~~--~~~~~~~~~~r~~~qP~~~~saGS~FkNP~~~~~~Ag~LIe~~GlKG~~~Gga~ 282 (331)
. .+||++++|++ .+.+++ ..+|.+.+.+|+++||..+||||||||||++ .+||||||+|||||+|+|+|+
T Consensus 161 ~-~~iil~a~~~l~~~~~~~~~~~~i~~~~~~~~~~r~~~~p~~~psaGS~FkNP~~--~~Ag~LIe~~GlkG~~iG~a~ 237 (284)
T TIGR00179 161 Y-VGLVLKAEFQLTLGFGTRLDPETITAQQVFNKVCRMRTSHYPDPNAGSFFKNPSP--NHAGRLIEECGLKGYQIGGAA 237 (284)
T ss_pred C-cEEEEEEEEEecccccccCChhhhhHHHHHHHHHHHHcCCCcCCCccccccCcCC--chHHHHHHHcCCCCCccCCEE
Confidence 1 27999999999 666644 4677888889999999999999999999984 699999999999999999999
Q ss_pred EeccCcceEEeCCCCCHHHHHHHHHHHHHHHHHHhCCeeecceEEec
Q 020076 283 VSNIHANFFVNTGGSTSRDMLNLIAFVKEKVDQKFGVQLKEEVQYFH 329 (331)
Q Consensus 283 vS~~HanfivN~g~Ata~dv~~Li~~v~~~V~~~~gi~Le~Ev~~i~ 329 (331)
||++|||||||.|+||++||++||++||++|+++|||+||+||+++|
T Consensus 238 vS~~HanfivN~g~At~~di~~Li~~v~~~V~~~~gi~Le~Ev~~ig 284 (284)
T TIGR00179 238 VSKQHANFLVNIDNAKSEDVLDLIEHVKAEVGEKYGILLEPEVKIIG 284 (284)
T ss_pred EccccCcEEEECCCCCHHHHHHHHHHHHHHHHHHHCCeeeEEeEEcC
Confidence 99999999999999999999999999999999999999999999986
No 12
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=100.00 E-value=2.4e-82 Score=593.90 Aligned_cols=261 Identities=37% Similarity=0.556 Sum_probs=242.2
Q ss_pred cCCCcccccccCCCccccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccccCCCCEEEEEc-C-CCceEEcCCeE
Q 020076 47 RNKLLKDLSTWGIGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDDLGFDGCVILN-R-IEFLERKETGI 124 (331)
Q Consensus 47 ~~~~L~~~tt~~iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d~~~~GvVI~~-~-l~~i~~~~~~~ 124 (331)
+++||++||||+|||+|++++ |+|++||.+++ ++|++++|+|||+|++|.+++|+||.+ + +..++.+ +
T Consensus 5 ~~~~L~~~tt~riGG~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL~~D~g~~g~vI~l~~~~~~~~~~--~- 74 (273)
T PRK14651 5 ERVPLARYTTLGVGGPAELWT-VETHEQLAEAT------EAPYRVLGGGSNLLVSDAGVPERVIRLGGEFAEWDLD--G- 74 (273)
T ss_pred CCCccccccEeecCceEEEEe-cCCHHHHHHHH------CCCeEEEeceeEEEEcCCCcceEEEEECCcceeEeEC--C-
Confidence 568999999999999999999 99999999987 489999999999999999999999987 3 4444432 2
Q ss_pred EEEcCCCcHHHHHHHHHHcCCCcccCCCCccccchHHHHhhhhccCccccceeeEEEEEeCCCcEEEEecCccccccccc
Q 020076 125 YRVGSGFRFNSLGMQCCTEGFTGLEFAAGIPGTVGGAVYMNAGANGQETAGVIDSVDIVTLGGKLQRVSRNDLKFGYRSS 204 (331)
Q Consensus 125 v~v~AG~~l~~L~~~~~~~Gl~GlE~l~gIPgTVGGav~mNaGayG~ei~d~v~sv~vv~~~G~v~~~~~~el~~~YR~s 204 (331)
+|+||+.|++|+++|.++||+|+||++|||||||||++|||||||.+|+|+|.+|++++ +|++++++++||.|+||+|
T Consensus 75 -~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mNaGayG~ei~d~l~~V~~~~-~g~~~~~~~~e~~f~YR~S 152 (273)
T PRK14651 75 -WVGGGVPLPGLVRRAARLGLSGLEGLVGIPAQVGGAVKMNAGTRFGEMADALHTVEIVH-DGGFHQYSPDELGFGYRHS 152 (273)
T ss_pred -EEECCCcHHHHHHHHHHCCCcchhhhcCCCcchhhHHHhhCCccccChheeEEEEEEEE-CCCEEEEEHHHcccccccc
Confidence 69999999999999999999999999999999999999999999999999999999998 8999999999999999999
Q ss_pred cccCCCCceEEEEEEEEeEeCChH--HHHHHHHHHHHhcCCCCCCCCeeeeccCCCCCCccHHHHHHHhCCCCeeECCEE
Q 020076 205 SFQDMKDLAAIVAVTFQLQESTSA--RRKQREYLDRRRMTQPLGERTAGSVFRNPSDKEVAAAELIERAGLKGFRVGGAM 282 (331)
Q Consensus 205 ~f~~~g~~gII~~a~lkL~~~~~~--~~~~~~~~~~r~~~qP~~~~saGS~FkNP~~~~~~Ag~LIe~~GlKG~~~Gga~ 282 (331)
.|++ .+||++|+|+|.+.+++ .+.|++.+++|+ +|| ++||||||||||+ +.+||||||+|||||+|+|+|+
T Consensus 153 ~~~~---~~iIl~a~f~l~~~~~~~i~~~~~~~~~~R~-~qP-~~psaGS~FKNP~--~~~Ag~LIe~~GLKG~~iGgA~ 225 (273)
T PRK14651 153 GLPP---GHVVTRVRLKLRPSTPEAVLAKMALVDAARK-GQP-KKKSAGCAFKNPP--GDSAGRLIDEAGLKGTRVGDAM 225 (273)
T ss_pred CCCC---CEEEEEEEEEECCCCHHHHHHHHHHHHHHhc-CCc-cCCCCcceEeCcC--CCcHHHHHHHhCCCCCccCCEE
Confidence 9974 37999999999998865 466777777777 999 8899999999998 4799999999999999999999
Q ss_pred EeccCcceEEeCCCCCHHHHHHHHHHHHHHHHHHhCCeeecceEEecC
Q 020076 283 VSNIHANFFVNTGGSTSRDMLNLIAFVKEKVDQKFGVQLKEEVQYFHP 330 (331)
Q Consensus 283 vS~~HanfivN~g~Ata~dv~~Li~~v~~~V~~~~gi~Le~Ev~~i~~ 330 (331)
||+||||||||.|+||++||++||++||++| ||+||+||+++|.
T Consensus 226 vS~kHanFIVN~G~Ata~Dil~Li~~v~~~v----Gi~Le~Ev~iig~ 269 (273)
T PRK14651 226 ISPEHGNFIVNLGGATAADVHALLRRVRARV----GLPLELEWELWPE 269 (273)
T ss_pred EccccccEEEECCCCCHHHHHHHHHHHHHHH----CceEEEeeEEecc
Confidence 9999999999999999999999999999877 9999999999983
No 13
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=100.00 E-value=2.7e-81 Score=597.15 Aligned_cols=280 Identities=42% Similarity=0.696 Sum_probs=264.5
Q ss_pred cccCCCcccccccCCCccccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccccCCCCEEEEEc-C-CCceEEcCC
Q 020076 45 IRRNKLLKDLSTWGIGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDDLGFDGCVILN-R-IEFLERKET 122 (331)
Q Consensus 45 ~~~~~~L~~~tt~~iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d~~~~GvVI~~-~-l~~i~~~~~ 122 (331)
+++++||++||||++||+|++++.|+|++||++++++|+++++|++++|+|||++++|.+++|++|++ + ++.++++ +
T Consensus 13 ~~~~~~l~~~~t~~igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g~~gvvI~l~~~l~~i~~~-~ 91 (298)
T PRK13905 13 LLENEPLARYTSFRVGGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGGIRGVVIRLGKGLNEIEVE-G 91 (298)
T ss_pred eecCCCccccceeecCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCCcceEEEEecCCcceEEec-C
Confidence 67899999999999999999999999999999999999999999999999999999998899999998 5 7777543 4
Q ss_pred eEEEEcCCCcHHHHHHHHHHcCCCcccCCCCccccchHHHHhhhhccCccccceeeEEEEEeCCCcEEEEecCccccccc
Q 020076 123 GIYRVGSGFRFNSLGMQCCTEGFTGLEFAAGIPGTVGGAVYMNAGANGQETAGVIDSVDIVTLGGKLQRVSRNDLKFGYR 202 (331)
Q Consensus 123 ~~v~v~AG~~l~~L~~~~~~~Gl~GlE~l~gIPgTVGGav~mNaGayG~ei~d~v~sv~vv~~~G~v~~~~~~el~~~YR 202 (331)
.+++|+||+.|.+|.+++.++||+|+|++++||||||||++||+|+||.+++|+|.+|+++|++|++++++++||+|+||
T Consensus 92 ~~v~v~aG~~~~~L~~~l~~~Gl~gle~~~gipGTVGGai~~NaG~~G~~~~d~v~~v~vv~~~G~~~~~~~~e~~~~yR 171 (298)
T PRK13905 92 NRITAGAGAPLIKLARFAAEAGLSGLEFAAGIPGTVGGAVFMNAGAYGGETADVLESVEVLDRDGEIKTLSNEELGFGYR 171 (298)
T ss_pred CEEEEECCCcHHHHHHHHHHcCCCcchhccCCCcchhHHHHHcCCcCceEhheeEEEEEEEeCCCCEEEEEHHHcCCcCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCceEEEEEEEEeEeCChH--HHHHHHHHHHHhcCCCCCCCCeeeeccCCCCCCccHHHHHHHhCCCCeeECC
Q 020076 203 SSSFQDMKDLAAIVAVTFQLQESTSA--RRKQREYLDRRRMTQPLGERTAGSVFRNPSDKEVAAAELIERAGLKGFRVGG 280 (331)
Q Consensus 203 ~s~f~~~g~~gII~~a~lkL~~~~~~--~~~~~~~~~~r~~~qP~~~~saGS~FkNP~~~~~~Ag~LIe~~GlKG~~~Gg 280 (331)
+|.|+++ ++|||+|+|+|+|.+++ ++.++..++.|+++||...|||||+||||++ .+||||||+|||||+|+|+
T Consensus 172 ~s~~~~~--~gII~~~~l~l~~~~~~~i~~~~~~~~~~R~~~~P~~~~s~Gs~FkNP~~--~~ag~LIe~~GlkG~~~G~ 247 (298)
T PRK13905 172 HSALQEE--GLIVLSATFQLEPGDKEEIKARMDELLARREATQPLEYPSAGSVFKNPPG--HFAGKLIEEAGLKGYRIGG 247 (298)
T ss_pred cccCCCC--CEEEEEEEEEEcCCCHHHHHHHHHHHHHHHHhcCCCCCCccceeeeCCCC--chHHHHHHHcCCCCCccCC
Confidence 9998742 48999999999998654 4567778888999999999999999999984 6999999999999999999
Q ss_pred EEEeccCcceEEeCCCCCHHHHHHHHHHHHHHHHHHhCCeeecceEEec
Q 020076 281 AMVSNIHANFFVNTGGSTSRDMLNLIAFVKEKVDQKFGVQLKEEVQYFH 329 (331)
Q Consensus 281 a~vS~~HanfivN~g~Ata~dv~~Li~~v~~~V~~~~gi~Le~Ev~~i~ 329 (331)
|+||+||||||||.|+||++||++||+.||++|+++|||+||+||+++|
T Consensus 248 a~vs~~hanfivN~g~at~~dv~~L~~~v~~~V~~~~gi~Le~Ev~~~g 296 (298)
T PRK13905 248 AQVSEKHANFIINTGGATAADIEDLIEHVQKTVKEKFGVELEWEVRIIG 296 (298)
T ss_pred EEEccccCcEEEECCCCCHHHHHHHHHHHHHHHHHHHCCeeeEeeEEec
Confidence 9999999999999999999999999999999999999999999999997
No 14
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=100.00 E-value=1.1e-80 Score=577.63 Aligned_cols=256 Identities=30% Similarity=0.455 Sum_probs=232.1
Q ss_pred ccCCCcccccccCCCccccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccccCCCCEEEEEcCCCceEEcCCeEE
Q 020076 46 RRNKLLKDLSTWGIGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDDLGFDGCVILNRIEFLERKETGIY 125 (331)
Q Consensus 46 ~~~~~L~~~tt~~iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d~~~~GvVI~~~l~~i~~~~~~~v 125 (331)
++++||++||||||||+|++++.|++.+ + ++|++++|+|||+|++|.+++++++..+++.+++++ ..|
T Consensus 2 ~~~~~L~~~tt~~iGG~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~D~g~~~vv~~~~~~~~~~~~-~~v 69 (257)
T PRK13904 2 TKIIDFSKYSSVKIGPPLEVLVLEEIDD-F----------SQDGQIIGGANNLLISPNPKNLAILGKNFDYIKIDG-ECL 69 (257)
T ss_pred CcCcchhhcCceeECceEEEEEEechhh-h----------CCCeEEEeceeEEEEecCCccEEEEccCcCeEEEeC-CEE
Confidence 6789999999999999999999998887 6 789999999999999999877666322577777654 479
Q ss_pred EEcCCCcHHHHHHHHHHcCCCcccCCCCccccchHHHHhhhhccCccccceeeEEEEEeCCCcEEEEecCcccccccccc
Q 020076 126 RVGSGFRFNSLGMQCCTEGFTGLEFAAGIPGTVGGAVYMNAGANGQETAGVIDSVDIVTLGGKLQRVSRNDLKFGYRSSS 205 (331)
Q Consensus 126 ~v~AG~~l~~L~~~~~~~Gl~GlE~l~gIPgTVGGav~mNaGayG~ei~d~v~sv~vv~~~G~v~~~~~~el~~~YR~s~ 205 (331)
+|+||+.|++|+++|.++||+||||++|||||||||++|||||||.+|+|+|++|+++| | +++++||.|+||+|.
T Consensus 70 ~~~AG~~l~~l~~~~~~~gl~GlE~l~gIPGtVGGAv~mNaGa~g~ei~d~l~~V~~~~--~---~~~~~e~~f~YR~S~ 144 (257)
T PRK13904 70 EIGGATKSGKIFNYAKKNNLGGFEFLGKLPGTLGGLVKMNAGLKEYEISNNLESICTNG--G---WIEKEDIGFGYRSSG 144 (257)
T ss_pred EEEcCCcHHHHHHHHHHCCCchhhhhcCCCccHHHHHHhcCCcCccchheeEEEEEEEe--e---EEeHHHCcccccCcC
Confidence 99999999999999999999999999999999999999999999999999999999998 3 689999999999999
Q ss_pred ccCCCCceEEEEEEEEeEeCChHHHHHHHHHHHHhcCCCCCCCCeeeeccCCCCCCccHHHHHHHhCCCCeeECCEEEec
Q 020076 206 FQDMKDLAAIVAVTFQLQESTSARRKQREYLDRRRMTQPLGERTAGSVFRNPSDKEVAAAELIERAGLKGFRVGGAMVSN 285 (331)
Q Consensus 206 f~~~g~~gII~~a~lkL~~~~~~~~~~~~~~~~r~~~qP~~~~saGS~FkNP~~~~~~Ag~LIe~~GlKG~~~Gga~vS~ 285 (331)
|+ .||++|+|+|.+.+++..+ +...++| ++|| ..||||||||||+ +.+||||||+|||||+|+|+|+||+
T Consensus 145 ~~-----~iIl~a~f~l~~~~~~~i~-~~~~~~R-~~qP-~~psaGSvFkNP~--~~~Ag~LIe~aGlKG~~iG~A~vS~ 214 (257)
T PRK13904 145 IN-----GVILEARFKKTHGFDEELL-EAFKSMR-KNQP-KGPSFGSCFKNPK--GDYAGRLIEAVGLKGYCKGGAGFSE 214 (257)
T ss_pred CC-----cEEEEEEEEECCCCHHHHH-HHHHHHH-HhCC-CCCCcceeecCCC--cccchHHHHHcCCCCCcccCEEECh
Confidence 96 3999999999998765322 2333444 4899 6799999999998 4699999999999999999999999
Q ss_pred cCcceEEeCCCCCHHHHHHHHHHHHHHHHHHhCCeeecceEEe
Q 020076 286 IHANFFVNTGGSTSRDMLNLIAFVKEKVDQKFGVQLKEEVQYF 328 (331)
Q Consensus 286 ~HanfivN~g~Ata~dv~~Li~~v~~~V~~~~gi~Le~Ev~~i 328 (331)
||||||||.|+|||+||++||++||++|+++|||.||+||+++
T Consensus 215 kHanfIVN~g~Ata~Dvl~Li~~v~~~V~e~~Gi~Le~Ev~~i 257 (257)
T PRK13904 215 EHANFLVNLGGATFEDALDLIELAKKRVLEEFGINLEEEVIIL 257 (257)
T ss_pred hhcCeEEECCCCCHHHHHHHHHHHHHHHHHHHCCeeeEEeEEC
Confidence 9999999999999999999999999999999999999999986
No 15
>PF02873 MurB_C: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; InterPro: IPR011601 This entry represents a C-terminal conserved region of UDP-N-acetylenolpyruvoylglucosamine reductase 1.1.1.158 from EC, which is also called UDP-N-acetylmuramate dehydrogenase. It is a part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide, which is a precursor of bacterial peptidoglycan. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 1MBB_A 2Q85_A 2MBR_A 1UXY_A 1MBT_A 1HSK_A 2GQU_A 2GQT_A 3I99_A 3TX1_A.
Probab=100.00 E-value=4.7e-40 Score=267.35 Aligned_cols=101 Identities=51% Similarity=0.819 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCCeeeeccCCCCCCccHHHHHHHhCCCCeeECCEEEeccCcceEEeCCCCCHHHHHHHHHH
Q 020076 229 RRKQREYLDRRRMTQPLGERTAGSVFRNPSDKEVAAAELIERAGLKGFRVGGAMVSNIHANFFVNTGGSTSRDMLNLIAF 308 (331)
Q Consensus 229 ~~~~~~~~~~r~~~qP~~~~saGS~FkNP~~~~~~Ag~LIe~~GlKG~~~Gga~vS~~HanfivN~g~Ata~dv~~Li~~ 308 (331)
.++|.+++++|+.+||...||||||||||.+...+||||||+|||||+++|+|+||++|||||||.|+|||+||++||++
T Consensus 5 ~~~~~~~~~~R~~~qP~~~~saGS~FkNP~~~~~~Ag~LIe~aGlKG~~iG~a~vS~kHanfivN~g~Ata~dv~~Li~~ 84 (105)
T PF02873_consen 5 REAMQEIRRKRKLKQPLELPSAGSVFKNPPGDEKSAGWLIEQAGLKGFRIGGAQVSEKHANFIVNHGGATAADVLALIEE 84 (105)
T ss_dssp HHHHHHHHHHHHCHSTTTSCEEEESB---TTSHH-HHHHHHHTT-TT-EETTEEE-SSSTTEEEE-SS--HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCCCcceeeeCCCcchhhHHHHHHHcCCCCCeeCcCEechhhCCeEEECCCCCHHHHHHHHHH
Confidence 46778888899999999999999999999952239999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCeeecceEEec
Q 020076 309 VKEKVDQKFGVQLKEEVQYFH 329 (331)
Q Consensus 309 v~~~V~~~~gi~Le~Ev~~i~ 329 (331)
||++|+++|||+||+||+++|
T Consensus 85 v~~~V~~~~Gi~Le~Ev~~iG 105 (105)
T PF02873_consen 85 VRERVKEKFGIELEPEVRIIG 105 (105)
T ss_dssp HHHHHHHHHS--B-BSSEEES
T ss_pred HHHHHHHHHCCeeeeccEEeC
Confidence 999999999999999999987
No 16
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.91 E-value=5.9e-24 Score=211.26 Aligned_cols=162 Identities=22% Similarity=0.281 Sum_probs=138.0
Q ss_pred EEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccccCC-CCEEEEEc-CCCce-EEcC-CeEEEEcCCCcHHHHHHHHH
Q 020076 66 FVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDDLG-FDGCVILN-RIEFL-ERKE-TGIYRVGSGFRFNSLGMQCC 141 (331)
Q Consensus 66 ~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d~~-~~GvVI~~-~l~~i-~~~~-~~~v~v~AG~~l~~L~~~~~ 141 (331)
+++|+|+|||++++++|+++++|++++|+|||+...... .++++|++ +|+.| ++++ +.+++|+||+.+.+|.+++.
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l~ 80 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEEGGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAVE 80 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCCCeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHHH
Confidence 468999999999999999999999999999998643322 25788988 69987 7874 57999999999999999999
Q ss_pred HcCCCc-ccCCCCccccchHHHHhhhhc-----cCccccceeeEEEEEeCCCcEEEEecCc--cccccccccc--cCCCC
Q 020076 142 TEGFTG-LEFAAGIPGTVGGAVYMNAGA-----NGQETAGVIDSVDIVTLGGKLQRVSRND--LKFGYRSSSF--QDMKD 211 (331)
Q Consensus 142 ~~Gl~G-lE~l~gIPgTVGGav~mNaGa-----yG~ei~d~v~sv~vv~~~G~v~~~~~~e--l~~~YR~s~f--~~~g~ 211 (331)
++|+.. .++.+..++|+||+++||+|+ ||. ++|+|.++++|+++|++++++... ..++|+...+ +++|+
T Consensus 81 ~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~-~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~Gt 159 (413)
T TIGR00387 81 EHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGT-TVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSEGT 159 (413)
T ss_pred HcCCeeCCCCcccccceehhhhhcCCCCCcceeecc-HHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCCcc
Confidence 999974 688888899999999999875 564 999999999999999999887543 5677775433 35789
Q ss_pred ceEEEEEEEEeEeCChH
Q 020076 212 LAAIVAVTFQLQESTSA 228 (331)
Q Consensus 212 ~gII~~a~lkL~~~~~~ 228 (331)
+||||+++|||.|.++.
T Consensus 160 lGiit~~~lkl~p~p~~ 176 (413)
T TIGR00387 160 LGIVTEATLKLLPKPEN 176 (413)
T ss_pred ceEEEEEEEEeecCCCc
Confidence 99999999999997653
No 17
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=99.91 E-value=1.4e-23 Score=213.17 Aligned_cols=179 Identities=21% Similarity=0.229 Sum_probs=144.7
Q ss_pred CCCccccccc---CCCccccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccccCC-CCEEEEEc-CCCce-EEc-
Q 020076 48 NKLLKDLSTW---GIGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDDLG-FDGCVILN-RIEFL-ERK- 120 (331)
Q Consensus 48 ~~~L~~~tt~---~iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d~~-~~GvVI~~-~l~~i-~~~- 120 (331)
+.++..|++= .....+.++++|+|++||++++++|+++++|++++|+|||+...... .+|++|++ +|+.| +++
T Consensus 38 ~~~~~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~~~gividl~~ln~I~~id~ 117 (499)
T PRK11230 38 DEELIPYECDGLSAYRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPLEKGVLLVMARFNRILDINP 117 (499)
T ss_pred HHHHHHhccCcccccCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccCCCcEEEEcccCCCceEEcC
Confidence 3455666531 12346889999999999999999999999999999999999654432 25899998 69886 787
Q ss_pred CCeEEEEcCCCcHHHHHHHHHHcCCC-cccCCCCccccchHHHHhhhhc-----cCccccceeeEEEEEeCCCcEEEEec
Q 020076 121 ETGIYRVGSGFRFNSLGMQCCTEGFT-GLEFAAGIPGTVGGAVYMNAGA-----NGQETAGVIDSVDIVTLGGKLQRVSR 194 (331)
Q Consensus 121 ~~~~v~v~AG~~l~~L~~~~~~~Gl~-GlE~l~gIPgTVGGav~mNaGa-----yG~ei~d~v~sv~vv~~~G~v~~~~~ 194 (331)
++.+++|+||+++.+|.+++.++|+. +....+..++||||++++|+|+ ||. +.|+|.++++|+++|++++++.
T Consensus 118 ~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~-~~d~v~~levVl~~G~i~~~~~ 196 (499)
T PRK11230 118 VGRRARVQPGVRNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGL-TVHNLLKVEILTLDGEALTLGS 196 (499)
T ss_pred CCCEEEEcCCccHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCC-hhhheeEEEEEcCCCcEEEeCC
Confidence 46799999999999999999999996 4455566778999999999886 997 9999999999999999999875
Q ss_pred Ccccc-ccc--cccccCCCCceEEEEEEEEeEeCCh
Q 020076 195 NDLKF-GYR--SSSFQDMKDLAAIVAVTFQLQESTS 227 (331)
Q Consensus 195 ~el~~-~YR--~s~f~~~g~~gII~~a~lkL~~~~~ 227 (331)
..... +|+ ....+++|++||||++|||+.|.++
T Consensus 197 ~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~ 232 (499)
T PRK11230 197 DALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPP 232 (499)
T ss_pred ccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCc
Confidence 43221 333 2223357899999999999999765
No 18
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=99.90 E-value=8.5e-23 Score=204.31 Aligned_cols=157 Identities=21% Similarity=0.302 Sum_probs=134.0
Q ss_pred CCccccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCc---ccccccCCCCEEEEEc-CCCce-EEcC-CeEEEEcCCCc
Q 020076 59 IGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGS---NCLFDDLGFDGCVILN-RIEFL-ERKE-TGIYRVGSGFR 132 (331)
Q Consensus 59 iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GS---Nll~~d~~~~GvVI~~-~l~~i-~~~~-~~~v~v~AG~~ 132 (331)
+...|+.++.|+|+|||++++++|+++++|++++|+|| |+.++| |++|++ +|+.+ ++|+ +.+|+|+||++
T Consensus 11 ~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~~~----gvvIdl~~l~~i~~id~~~~~vtV~aG~~ 86 (438)
T TIGR01678 11 YSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIACTD----GFLIHLDKMNKVLQFDKEKKQITVEAGIR 86 (438)
T ss_pred ccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCccCC----eEEEEhhhcCCceEEcCCCCEEEEcCCCC
Confidence 34568999999999999999999999999999999994 555543 799998 68886 7875 47999999999
Q ss_pred HHHHHHHHHHcCCCcccCCCCcc-ccchHHHHhhhhccCccc-----cceeeEEEEEeCCCcEEEEecC---cccccccc
Q 020076 133 FNSLGMQCCTEGFTGLEFAAGIP-GTVGGAVYMNAGANGQET-----AGVIDSVDIVTLGGKLQRVSRN---DLKFGYRS 203 (331)
Q Consensus 133 l~~L~~~~~~~Gl~GlE~l~gIP-gTVGGav~mNaGayG~ei-----~d~v~sv~vv~~~G~v~~~~~~---el~~~YR~ 203 (331)
+.+|.+++.++|++ ++++.++| +||||++ ++|+||..+ +|.|.++++|+++|++++++++ |++++.|.
T Consensus 87 l~~L~~~L~~~Gl~-l~~~g~~~~~TvGG~i--atg~hG~~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dlf~a~~~ 163 (438)
T TIGR01678 87 LYQLHEQLDEHGYS-MSNLGSISEVSVAGII--STGTHGSSIKHGILATQVVALTIMTADGEVLECSEERNADVFQAARV 163 (438)
T ss_pred HHHHHHHHHHcCCE-ecCCCCCCCceeeehh--cCCCCCCccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhHHHHHhc
Confidence 99999999999998 89999999 8999965 667776554 4999999999999999999876 44555554
Q ss_pred ccccCCCCceEEEEEEEEeEeCC
Q 020076 204 SSFQDMKDLAAIVAVTFQLQEST 226 (331)
Q Consensus 204 s~f~~~g~~gII~~a~lkL~~~~ 226 (331)
+ .|.+||||++||++.|..
T Consensus 164 ~----~G~lGIIt~vtl~l~p~~ 182 (438)
T TIGR01678 164 S----LGCLGIIVTVTIQVVPQF 182 (438)
T ss_pred C----CCceEeeEEEEEEEEecc
Confidence 4 478899999999999965
No 19
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.89 E-value=1.9e-22 Score=170.63 Aligned_cols=131 Identities=27% Similarity=0.375 Sum_probs=114.3
Q ss_pred ccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccccCCCCEEEEEc-CCCc-eEEcC-CeEEEEcCCCcHHHHHHH
Q 020076 63 CNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDDLGFDGCVILN-RIEF-LERKE-TGIYRVGSGFRFNSLGMQ 139 (331)
Q Consensus 63 a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d~~~~GvVI~~-~l~~-i~~~~-~~~v~v~AG~~l~~L~~~ 139 (331)
|+++++|++++|+++++++|+++++|+.++|+|||+.......++++|++ +|+. +++|+ +.+++|+||+.|.+|.++
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~~ 80 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSSDEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYEA 80 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTSSTTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccccCCcEEEeeccccccccccccceeEEEeccccchhcccc
Confidence 57899999999999999999999999999999999983332368999999 7988 57874 689999999999999999
Q ss_pred HHHcCCC-cccCCCCccccchHHHHhhhhccCc----cccceeeEEEEEeCCCcEEEEe
Q 020076 140 CCTEGFT-GLEFAAGIPGTVGGAVYMNAGANGQ----ETAGVIDSVDIVTLGGKLQRVS 193 (331)
Q Consensus 140 ~~~~Gl~-GlE~l~gIPgTVGGav~mNaGayG~----ei~d~v~sv~vv~~~G~v~~~~ 193 (331)
+.++|+. +++..+..|+|+||++.||++.++. .+.|.|.++++|+++|+++++|
T Consensus 81 l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~~s 139 (139)
T PF01565_consen 81 LAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVRCS 139 (139)
T ss_dssp HHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEEEE
T ss_pred cccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEEeC
Confidence 9888875 6788888999999999999886432 2779999999999999999875
No 20
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.89 E-value=3.5e-22 Score=204.23 Aligned_cols=158 Identities=21% Similarity=0.226 Sum_probs=135.6
Q ss_pred CCccccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCc---ccccccCCCCEEEEEc-CCCce-EEcC-CeEEEEcCCCc
Q 020076 59 IGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGS---NCLFDDLGFDGCVILN-RIEFL-ERKE-TGIYRVGSGFR 132 (331)
Q Consensus 59 iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GS---Nll~~d~~~~GvVI~~-~l~~i-~~~~-~~~v~v~AG~~ 132 (331)
.-..+..++.|+|++||++++++|+++++|++++|+|| |+++++. .+|++ +|+.+ ++|+ ..+|+|+||+.
T Consensus 93 ~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~td~----glIdL~~l~~Il~vD~e~~~VtV~AG~~ 168 (573)
T PLN02465 93 HEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFSRE----GMVNLALMDKVLEVDKEKKRVTVQAGAR 168 (573)
T ss_pred cCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeCCC----EEEECcCCCCcEEEeCCCCEEEEccCCC
Confidence 34568899999999999999999999999999999998 7777664 35788 68875 7774 47999999999
Q ss_pred HHHHHHHHHHcCCCcccCCCCc-cccchHHHHhhhhccCc-----cccceeeEEEEEeCCCcEEEEecCc---ccccccc
Q 020076 133 FNSLGMQCCTEGFTGLEFAAGI-PGTVGGAVYMNAGANGQ-----ETAGVIDSVDIVTLGGKLQRVSRND---LKFGYRS 203 (331)
Q Consensus 133 l~~L~~~~~~~Gl~GlE~l~gI-PgTVGGav~mNaGayG~-----ei~d~v~sv~vv~~~G~v~~~~~~e---l~~~YR~ 203 (331)
+.+|.+.+.++||+ ++++.+| ++||||++ ++|+||. .++|.|+++++|+++|+++++++++ ++++.|.
T Consensus 169 l~~L~~~L~~~GLa-l~n~g~I~~~TIGGaI--stGtHGtG~~~g~i~d~V~~l~lVta~G~vv~~s~~~~pdLF~aar~ 245 (573)
T PLN02465 169 VQQVVEALRPHGLT-LQNYASIREQQIGGFI--QVGAHGTGARIPPIDEQVVSMKLVTPAKGTIELSKEDDPELFRLARC 245 (573)
T ss_pred HHHHHHHHHHcCCE-eccCCCCCCeeecchh--hCCCCCcCCCcCcHhheEEEEEEEECCCCEEEECCCCCHHHHhHhhc
Confidence 99999999999999 9999999 79999999 5677775 4899999999999999999998764 4555554
Q ss_pred ccccCCCCceEEEEEEEEeEeCCh
Q 020076 204 SSFQDMKDLAAIVAVTFQLQESTS 227 (331)
Q Consensus 204 s~f~~~g~~gII~~a~lkL~~~~~ 227 (331)
+ .|.+|||+++||++.|...
T Consensus 246 g----lG~lGVIteVTLql~P~~~ 265 (573)
T PLN02465 246 G----LGGLGVVAEVTLQCVPAHR 265 (573)
T ss_pred c----CCCCcEEEEEEEEEEecCc
Confidence 4 3678999999999999764
No 21
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=99.88 E-value=6.4e-22 Score=202.80 Aligned_cols=163 Identities=18% Similarity=0.172 Sum_probs=133.0
Q ss_pred CCCccccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccccCC-CCEEEEEc-CCCce-EEc-CCeEEEEcCCCcH
Q 020076 58 GIGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDDLG-FDGCVILN-RIEFL-ERK-ETGIYRVGSGFRF 133 (331)
Q Consensus 58 ~iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d~~-~~GvVI~~-~l~~i-~~~-~~~~v~v~AG~~l 133 (331)
+..+.|+++++|+|++||++++++|+++++|++++|+|||+...... .+|++|++ +|+.| +++ ++.+++|+||+.|
T Consensus 129 ~~~~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~ 208 (555)
T PLN02805 129 KAVNIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPHGGVCIDMSLMKSVKALHVEDMDVVVEPGIGW 208 (555)
T ss_pred ccCCCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCCCCEEEEEccCCCCeEEEeCCCCEEEEeCCcCH
Confidence 34457999999999999999999999999999999999999754322 35899998 68887 577 4579999999999
Q ss_pred HHHHHHHHHcCCCcccCCCCcc-ccchHHHHhhhh-----ccCccccceeeEEEEEeCCCcEEEEecC--------cccc
Q 020076 134 NSLGMQCCTEGFTGLEFAAGIP-GTVGGAVYMNAG-----ANGQETAGVIDSVDIVTLGGKLQRVSRN--------DLKF 199 (331)
Q Consensus 134 ~~L~~~~~~~Gl~GlE~l~gIP-gTVGGav~mNaG-----ayG~ei~d~v~sv~vv~~~G~v~~~~~~--------el~~ 199 (331)
.+|.+++.++|+. +... ..| .||||++++|++ .||. ++|+|.++++|++||++++.... |+.|
T Consensus 209 ~~L~~~L~~~Gl~-~p~~-p~~~~TIGG~ia~n~~G~~s~~yG~-~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~ 285 (555)
T PLN02805 209 LELNEYLEPYGLF-FPLD-PGPGATIGGMCATRCSGSLAVRYGT-MRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTR 285 (555)
T ss_pred HHHHHHHHHcCCE-eCCC-CccccChhhHhhCCCcccccCcccc-HHHhEEEEEEEcCCceEEEecCccccCCCCccHHH
Confidence 9999999999996 2111 123 399999999954 5885 99999999999999999876422 4455
Q ss_pred ccccccccCCCCceEEEEEEEEeEeCCh
Q 020076 200 GYRSSSFQDMKDLAAIVAVTFQLQESTS 227 (331)
Q Consensus 200 ~YR~s~f~~~g~~gII~~a~lkL~~~~~ 227 (331)
..++| +|++||||+++|||.|.++
T Consensus 286 l~~Gs----eGtLGIIT~~tlrl~p~P~ 309 (555)
T PLN02805 286 LVIGS----EGTLGVITEVTLRLQKIPQ 309 (555)
T ss_pred HhccC----CCceEEEEEEEEEeecCCc
Confidence 55444 6899999999999998764
No 22
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=99.87 E-value=1.6e-21 Score=194.58 Aligned_cols=169 Identities=20% Similarity=0.252 Sum_probs=139.7
Q ss_pred CCccccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccccCCCCEEEEEc-CCCce-EEc-CCeEEEEcCCCcHHH
Q 020076 59 IGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDDLGFDGCVILN-RIEFL-ERK-ETGIYRVGSGFRFNS 135 (331)
Q Consensus 59 iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d~~~~GvVI~~-~l~~i-~~~-~~~~v~v~AG~~l~~ 135 (331)
..+.+.+++.|+|++||++++++|.++++|++++|+||++........|+||++ +|+.| ++| ++.+++|+||+.+.+
T Consensus 28 ~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~~gvvl~l~~mn~i~~id~~~~~~~v~aGv~l~~ 107 (459)
T COG0277 28 YRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPDGGVVLDLSRLNRILEIDPEDGTATVQAGVTLED 107 (459)
T ss_pred hcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCCCcEEEEchhhcchhccCcCCCEEEEcCCccHHH
Confidence 335677999999999999999999999999999999999875432223899998 69987 677 468999999999999
Q ss_pred HHHHHHHcCCC-cccCCCCccccchHHHHhhhhc-----cCccccceeeEEEEEeCCCcEEEEecC----cccccccccc
Q 020076 136 LGMQCCTEGFT-GLEFAAGIPGTVGGAVYMNAGA-----NGQETAGVIDSVDIVTLGGKLQRVSRN----DLKFGYRSSS 205 (331)
Q Consensus 136 L~~~~~~~Gl~-GlE~l~gIPgTVGGav~mNaGa-----yG~ei~d~v~sv~vv~~~G~v~~~~~~----el~~~YR~s~ 205 (331)
|.+++.++|+. +....+....||||++++|++. ||. +.|+|.++++|++||++++.... .-.+.+....
T Consensus 108 l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~-~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~~l~ 186 (459)
T COG0277 108 LEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGL-TRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLTALF 186 (459)
T ss_pred HHHHHHHcCCccCCCccccccceEccchhcCCCCccceeccc-HHHheeEEEEEcCCceehhhcCcccCCCCCCCHHHhc
Confidence 99999999996 2222222357899999999874 886 99999999999999999988764 3345565655
Q ss_pred ccCCCCceEEEEEEEEeEeCChH
Q 020076 206 FQDMKDLAAIVAVTFQLQESTSA 228 (331)
Q Consensus 206 f~~~g~~gII~~a~lkL~~~~~~ 228 (331)
..++|++||||+++|+|.|.++.
T Consensus 187 iGs~GtlGiit~~tl~l~p~~~~ 209 (459)
T COG0277 187 VGSEGTLGIITEATLKLLPLPET 209 (459)
T ss_pred ccCCccceEEEEEEEEeccCCch
Confidence 56789999999999999997543
No 23
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=99.86 E-value=7e-21 Score=193.38 Aligned_cols=161 Identities=21% Similarity=0.196 Sum_probs=135.6
Q ss_pred CccccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccccCCCCEEEEEc-CCCce-EEcC-CeEEEEcCCCcHHHH
Q 020076 60 GGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDDLGFDGCVILN-RIEFL-ERKE-TGIYRVGSGFRFNSL 136 (331)
Q Consensus 60 GG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d~~~~GvVI~~-~l~~i-~~~~-~~~v~v~AG~~l~~L 136 (331)
-..+..+++|+|+|||+++|+.|++++.|++++|+||+....... ++.+|++ +|+.+ ++|. +.+|+|+||+++.+|
T Consensus 59 ~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t-~g~lldL~~ln~Vl~vD~~~~tVtV~AG~~l~~L 137 (541)
T TIGR01676 59 EVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLS-RAGMVNLALMDKVLEVDEEKKRVRVQAGIRVQQL 137 (541)
T ss_pred ccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccC-CCeEEEhhhCCCCEEEcCCCCEEEEcCCCCHHHH
Confidence 345788999999999999999999999999999999986432221 2457898 68885 7884 579999999999999
Q ss_pred HHHHHHcCCCcccCCCCcc-ccchHHHHhhhhc----cCccccceeeEEEEEeCCCcEEEEecC---ccccccccccccC
Q 020076 137 GMQCCTEGFTGLEFAAGIP-GTVGGAVYMNAGA----NGQETAGVIDSVDIVTLGGKLQRVSRN---DLKFGYRSSSFQD 208 (331)
Q Consensus 137 ~~~~~~~Gl~GlE~l~gIP-gTVGGav~mNaGa----yG~ei~d~v~sv~vv~~~G~v~~~~~~---el~~~YR~s~f~~ 208 (331)
.+.+.++||+ +.++..|+ .||||++.+++.. ||. ++|.|+++++|+++|++++++++ |++++.|.+
T Consensus 138 ~~~L~~~Gla-l~n~gsi~~~TIGGaiatgtHGtg~~~G~-l~d~V~~l~lVta~G~vv~~s~~~~pdLF~Aargs---- 211 (541)
T TIGR01676 138 VDAIKEYGIT-LQNFASIREQQIGGIIQVGAHGTGAKLPP-IDEQVIAMKLVTPAKGTIEISKDKDPELFFLARCG---- 211 (541)
T ss_pred HHHHHHcCCE-eccCCCCCCceEccccccCCcCCCCCCCC-HHHhEEEEEEEECCCCEEEECCCCCHHHHHHHhcC----
Confidence 9999999997 55667776 5999999987543 554 99999999999999999999864 789999887
Q ss_pred CCCceEEEEEEEEeEeCCh
Q 020076 209 MKDLAAIVAVTFQLQESTS 227 (331)
Q Consensus 209 ~g~~gII~~a~lkL~~~~~ 227 (331)
.|.+||||++||++.|...
T Consensus 212 lG~LGVItevTLr~~Pa~~ 230 (541)
T TIGR01676 212 LGGLGVVAEVTLQCVERQE 230 (541)
T ss_pred CCceEeEEEEEEEEEeccc
Confidence 3789999999999999763
No 24
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=99.86 E-value=3.7e-21 Score=191.64 Aligned_cols=157 Identities=26% Similarity=0.307 Sum_probs=132.2
Q ss_pred CccccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccccCCCCEEEEEc-CCCce-EEcC-CeEEEEcCCCcHHHH
Q 020076 60 GGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDDLGFDGCVILN-RIEFL-ERKE-TGIYRVGSGFRFNSL 136 (331)
Q Consensus 60 GG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d~~~~GvVI~~-~l~~i-~~~~-~~~v~v~AG~~l~~L 136 (331)
-..+..++.|+|++||+++|+.|++ |++++|+||+.-... ..+|++|++ +|+.| ++|. +.+|+|+||++|.+|
T Consensus 9 ~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~-~~~g~~idl~~l~~i~~~d~~~~~v~v~aG~~l~~l 84 (419)
T TIGR01679 9 VAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLA-CTDGTMISLTGLQGVVDVDQPTGLATVEAGTRLGAL 84 (419)
T ss_pred cCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCcc-cCCCEEEEhhHcCCceeecCCCCEEEEcCCCCHHHH
Confidence 3468899999999999999999874 899999997643211 124799998 68886 7774 579999999999999
Q ss_pred HHHHHHcCCCcccCCCCc-cccchHHHHhhhhc----cCccccceeeEEEEEeCCCcEEEEecC---ccccccccccccC
Q 020076 137 GMQCCTEGFTGLEFAAGI-PGTVGGAVYMNAGA----NGQETAGVIDSVDIVTLGGKLQRVSRN---DLKFGYRSSSFQD 208 (331)
Q Consensus 137 ~~~~~~~Gl~GlE~l~gI-PgTVGGav~mNaGa----yG~ei~d~v~sv~vv~~~G~v~~~~~~---el~~~YR~s~f~~ 208 (331)
.+++.++|+. +.++.++ ++||||++++++.. || .++|+|.++++|++||++++++++ |++|+.|.+.
T Consensus 85 ~~~L~~~G~~-l~~~~~~~~~tvGG~ia~~~hG~g~~~G-~~~d~V~~l~vV~a~G~v~~~~~~~~~dLf~a~~g~~--- 159 (419)
T TIGR01679 85 GPQLAQRGLG-LENQGDIDPQSIGGALGTATHGTGVRFQ-ALHARIVSLRLVTAGGKVLDLSEGDDQDMYLAARVSL--- 159 (419)
T ss_pred HHHHHHcCCc-cccCCCCCCceeccceecCCCCCCccCC-chhhhEEEEEEEcCCCCEEEEcCCCCHHHHHHHHhCC---
Confidence 9999999995 7777888 57999999986553 45 499999999999999999999864 7899999873
Q ss_pred CCCceEEEEEEEEeEeCC
Q 020076 209 MKDLAAIVAVTFQLQEST 226 (331)
Q Consensus 209 ~g~~gII~~a~lkL~~~~ 226 (331)
|.+||||++||++.|..
T Consensus 160 -G~lGVIt~vtl~~~p~~ 176 (419)
T TIGR01679 160 -GALGVISQVTLQTVALF 176 (419)
T ss_pred -CceEEEEEEEEEeecce
Confidence 78999999999999865
No 25
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=99.84 E-value=2.6e-20 Score=190.85 Aligned_cols=160 Identities=19% Similarity=0.186 Sum_probs=130.0
Q ss_pred cccEEEEeCCHHHHHHHHHHHHHCCCceEEeCC-Ccccc--cccCCCC-EEEEEc-CCCc-eEEcC-CeEEEEcCCCcHH
Q 020076 62 PCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGK-GSNCL--FDDLGFD-GCVILN-RIEF-LERKE-TGIYRVGSGFRFN 134 (331)
Q Consensus 62 ~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~-GSNll--~~d~~~~-GvVI~~-~l~~-i~~~~-~~~v~v~AG~~l~ 134 (331)
.++.+++|+|+|||+++|++|+++++|++++|+ |+++. ..+.+.+ |++|++ +|+. +++|. +.+|+|+||+++.
T Consensus 31 ~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVtV~AG~~l~ 110 (557)
T TIGR01677 31 RAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVTVESGMSLR 110 (557)
T ss_pred CCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEEECCCCcHH
Confidence 578899999999999999999999999999964 55532 2222333 699998 6988 58885 4799999999999
Q ss_pred HHHHHHHHcCCCcccCCCCcc-ccchHHHHhhhhc-----cCccccceeeEEEEEeCCC------cEEEEecC---cccc
Q 020076 135 SLGMQCCTEGFTGLEFAAGIP-GTVGGAVYMNAGA-----NGQETAGVIDSVDIVTLGG------KLQRVSRN---DLKF 199 (331)
Q Consensus 135 ~L~~~~~~~Gl~GlE~l~gIP-gTVGGav~mNaGa-----yG~ei~d~v~sv~vv~~~G------~v~~~~~~---el~~ 199 (331)
+|.+++.++||+ +.+...++ .||||++.++++. +++.++|.|+++++|+++| ++++++++ |++|
T Consensus 111 ~L~~~L~~~Gla-l~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~s~~~~~dLf~ 189 (557)
T TIGR01677 111 ELIVEAEKAGLA-LPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILSEGDTPNEFN 189 (557)
T ss_pred HHHHHHHHcCCE-eccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEeCCCCCHHHHH
Confidence 999999999997 55655555 4999998765432 2224789999999999988 78888764 6899
Q ss_pred ccccccccCCCCceEEEEEEEEeEeCC
Q 020076 200 GYRSSSFQDMKDLAAIVAVTFQLQEST 226 (331)
Q Consensus 200 ~YR~s~f~~~g~~gII~~a~lkL~~~~ 226 (331)
+.|.+ .|++||||++||++.|..
T Consensus 190 a~rgs----lG~lGVVtevTL~~~P~~ 212 (557)
T TIGR01677 190 AAKVS----LGVLGVISQVTLALQPMF 212 (557)
T ss_pred hhccC----CCccEeeeEEEEEEEccc
Confidence 99987 378999999999999874
No 26
>PLN02441 cytokinin dehydrogenase
Probab=99.84 E-value=3e-20 Score=188.70 Aligned_cols=163 Identities=15% Similarity=0.132 Sum_probs=133.9
Q ss_pred CccccEEEEeCCHHHHHHHHHHHH--HCCCceEEeCCCcccccccCCCCEEEEEc-CCCc-------eEEc-CCeEEEEc
Q 020076 60 GGPCNYFVQVFDQSQLVSAIRYCH--EHSVRYVVIGKGSNCLFDDLGFDGCVILN-RIEF-------LERK-ETGIYRVG 128 (331)
Q Consensus 60 GG~a~~~v~P~s~eel~~iv~~a~--~~~~pv~vlG~GSNll~~d~~~~GvVI~~-~l~~-------i~~~-~~~~v~v~ 128 (331)
...|.++++|+|++||++++++|+ ++++|+.++|+||++.......+|++|+| +|+. ++++ +...|+|+
T Consensus 62 ~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~GivIdms~Ln~i~~~~~ii~vd~~~~~VtV~ 141 (525)
T PLN02441 62 HSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPGGVVVDMRSLRGGVRGPPVIVVSGDGPYVDVS 141 (525)
T ss_pred CCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCCeEEEECCCCCCcCccCceEEEcCCCCEEEEc
Confidence 446889999999999999999997 66899999999999865443446999999 6887 2455 34799999
Q ss_pred CCCcHHHHHHHHHHcCCCcccCCCCccccchHHHHhhh-h----ccCccccceeeEEEEEeCCCcEEEEecC---ccccc
Q 020076 129 SGFRFNSLGMQCCTEGFTGLEFAAGIPGTVGGAVYMNA-G----ANGQETAGVIDSVDIVTLGGKLQRVSRN---DLKFG 200 (331)
Q Consensus 129 AG~~l~~L~~~~~~~Gl~GlE~l~gIPgTVGGav~mNa-G----ayG~ei~d~v~sv~vv~~~G~v~~~~~~---el~~~ 200 (331)
||+.|.++.+++.++|++...+....-.||||++.+++ | .||. +.|+|.++++|+++|++++++++ |++|+
T Consensus 142 aG~~~~dv~~~l~~~GlaP~~~~d~~~~TVGG~ist~G~gg~s~ryG~-~~d~Vl~leVVtadGevv~~s~~~n~DLF~A 220 (525)
T PLN02441 142 GGELWIDVLKATLKHGLAPRSWTDYLYLTVGGTLSNAGISGQAFRHGP-QISNVLELDVVTGKGEVVTCSPTQNSDLFFA 220 (525)
T ss_pred CCCCHHHHHHHHHHCCCccCCccccCceEEeEEcCCCCccccccccCc-HHHhEEEEEEEeCCceEEEeCCCCChhHHHh
Confidence 99999999999999998733332222358999988642 2 4886 89999999999999999999854 79999
Q ss_pred cccccccCCCCceEEEEEEEEeEeCCh
Q 020076 201 YRSSSFQDMKDLAAIVAVTFQLQESTS 227 (331)
Q Consensus 201 YR~s~f~~~g~~gII~~a~lkL~~~~~ 227 (331)
.|++ +|++||||+++++|.|.++
T Consensus 221 v~Gg----lG~fGIIT~atlrL~Pap~ 243 (525)
T PLN02441 221 VLGG----LGQFGIITRARIALEPAPK 243 (525)
T ss_pred hccC----CCCcEEEEEEEEEEEecCC
Confidence 9987 3789999999999999865
No 27
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.81 E-value=3.1e-19 Score=173.80 Aligned_cols=150 Identities=15% Similarity=0.195 Sum_probs=122.9
Q ss_pred CHHHHHHHHHHHHHCCCceEEeCCCcccccccCCCCEEEEEc-CCCce-EEcC-CeEEEEcCCCcHHHHHHHHHHcCCC-
Q 020076 71 DQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDDLGFDGCVILN-RIEFL-ERKE-TGIYRVGSGFRFNSLGMQCCTEGFT- 146 (331)
Q Consensus 71 s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d~~~~GvVI~~-~l~~i-~~~~-~~~v~v~AG~~l~~L~~~~~~~Gl~- 146 (331)
.++||++++++|+++++|+.++|+||+..... ..++++|++ +|+.| +++. +.+|+|+||+++.+|.+++.++|+.
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~-~~~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G~~l 81 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGR-ALAGEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAGQML 81 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCC-CCCCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcCCee
Confidence 47999999999999999999999998643322 235679998 69886 7774 5799999999999999999999985
Q ss_pred cccCCCCc-c-ccchHHHHhhhhc-----cCccccceeeEEEEEeCCCcEEEEecC--------ccccccccccccCCCC
Q 020076 147 GLEFAAGI-P-GTVGGAVYMNAGA-----NGQETAGVIDSVDIVTLGGKLQRVSRN--------DLKFGYRSSSFQDMKD 211 (331)
Q Consensus 147 GlE~l~gI-P-gTVGGav~mNaGa-----yG~ei~d~v~sv~vv~~~G~v~~~~~~--------el~~~YR~s~f~~~g~ 211 (331)
.++.. .. + +||||.+++|+.. ||. ++|+|+++++|+++|++++++.. |++|.+++| .|+
T Consensus 82 p~~p~-~~~~~~TIGG~iatg~~G~~~~~yG~-~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs----~Gt 155 (352)
T PRK11282 82 PFEPP-HFGGGATLGGMVAAGLSGPRRPWAGA-VRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGS----LGT 155 (352)
T ss_pred CCCCC-CcCCCcEehhHHhcCCCCccccccCC-HHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhC----Cch
Confidence 33322 22 2 7999999999653 786 99999999999999999987532 677777776 479
Q ss_pred ceEEEEEEEEeEeCCh
Q 020076 212 LAAIVAVTFQLQESTS 227 (331)
Q Consensus 212 ~gII~~a~lkL~~~~~ 227 (331)
+||||+++||+.|.++
T Consensus 156 LGVitevtlkl~P~p~ 171 (352)
T PRK11282 156 LGVLLEVSLKVLPRPR 171 (352)
T ss_pred hhhheEEEEEEEecCc
Confidence 9999999999999764
No 28
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.79 E-value=9.2e-19 Score=176.46 Aligned_cols=129 Identities=15% Similarity=0.058 Sum_probs=107.5
Q ss_pred CccccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccccCCC------CEEEEEc-CCCce-EEcCCeEEEEcCCC
Q 020076 60 GGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDDLGF------DGCVILN-RIEFL-ERKETGIYRVGSGF 131 (331)
Q Consensus 60 GG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d~~~------~GvVI~~-~l~~i-~~~~~~~v~v~AG~ 131 (331)
.+.|.++|+|.|++||++++++|.++++|++++|+||++.....+. +++||++ +|+.| +++++..++|+||+
T Consensus 36 ~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID~~~~VvVePGV 115 (564)
T PRK11183 36 QGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLNNGKQVLALPGT 115 (564)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEECCCCeEEEeCCC
Confidence 4679999999999999999999999999999999999998665432 3688998 79987 57766789999999
Q ss_pred cHHHHHHHHHHcCCCccc--CCCCccccchHHHHhhhhc----cCccccceeeEEEEEeCCCcE
Q 020076 132 RFNSLGMQCCTEGFTGLE--FAAGIPGTVGGAVYMNAGA----NGQETAGVIDSVDIVTLGGKL 189 (331)
Q Consensus 132 ~l~~L~~~~~~~Gl~GlE--~l~gIPgTVGGav~mNaGa----yG~ei~d~v~sv~vv~~~G~v 189 (331)
.+.+|.+++.++|+..-. ..+.|..||||.|++|||. +|..+.|++.. ++|+++|++
T Consensus 116 tl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel 178 (564)
T PRK11183 116 TLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKL 178 (564)
T ss_pred cHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcE
Confidence 999999999999984111 1223345888999999995 34459999999 999999999
No 29
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.78 E-value=2.5e-18 Score=167.78 Aligned_cols=167 Identities=15% Similarity=0.132 Sum_probs=136.5
Q ss_pred CCCccccEEEEeCCHHHHHHHHHHHHHC--CCceEEeCCCcccccccCC-CCEEEEEcCC----CceE-E-cCCeEEEEc
Q 020076 58 GIGGPCNYFVQVFDQSQLVSAIRYCHEH--SVRYVVIGKGSNCLFDDLG-FDGCVILNRI----EFLE-R-KETGIYRVG 128 (331)
Q Consensus 58 ~iGG~a~~~v~P~s~eel~~iv~~a~~~--~~pv~vlG~GSNll~~d~~-~~GvVI~~~l----~~i~-~-~~~~~v~v~ 128 (331)
+-.-+|.+++.|.|+||+.+++|.|... .+|+..+|+||++-+.... .+|+||.+.. +.+. . .++-.+.|.
T Consensus 59 ~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~~~GvvV~m~~~~~~~~~~~~~~~~~yvdV~ 138 (505)
T KOG1231|consen 59 RTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALATRGGVVVCMDSSLLMKDVPVLVVDDLYVDVS 138 (505)
T ss_pred cCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccCCCCeEEEEehhhccCCCceeecccceEEee
Confidence 4445799999999999999999999999 8999999999999765543 6788887632 2221 1 234789999
Q ss_pred CCCcHHHHHHHHHHcCCCcccCCCCccccchHHHHh-----hhhccCccccceeeEEEEEeCCCcEEEEecCcccccccc
Q 020076 129 SGFRFNSLGMQCCTEGFTGLEFAAGIPGTVGGAVYM-----NAGANGQETAGVIDSVDIVTLGGKLQRVSRNDLKFGYRS 203 (331)
Q Consensus 129 AG~~l~~L~~~~~~~Gl~GlE~l~gIPgTVGGav~m-----NaGayG~ei~d~v~sv~vv~~~G~v~~~~~~el~~~YR~ 203 (331)
||..|-++.+++.++||+...|.-..|.||||.++. ||=.||. +.++|.+++||+++|+++++++. ..+.+=.
T Consensus 139 ~g~~Widll~~t~e~GL~p~swtDyl~ltVGGtlsnagiggqafRyGp-qi~NV~~LdVVtgkGeiv~cs~r-~n~~lf~ 216 (505)
T KOG1231|consen 139 AGTLWIDLLDYTLEYGLSPFSWTDYLPLTVGGTLSNAGIGGQAFRYGP-QISNVIELDVVTGKGEIVTCSKR-ANSNLFF 216 (505)
T ss_pred CChhHHHHHHHHHHcCCCccCcCCccceeecceeccCccccceeeccc-hhhceEEEEEEcCCCcEEecccc-cCceeee
Confidence 999999999999999999988988888999998863 2225897 77889999999999999998864 3333334
Q ss_pred ccccCCCCceEEEEEEEEeEeCC
Q 020076 204 SSFQDMKDLAAIVAVTFQLQEST 226 (331)
Q Consensus 204 s~f~~~g~~gII~~a~lkL~~~~ 226 (331)
..++++|++||||+|+++|+|.+
T Consensus 217 ~vlGglGqfGIITrArI~le~aP 239 (505)
T KOG1231|consen 217 LVLGGLGQFGIITRARIKLEPAP 239 (505)
T ss_pred eeeccCcceeeEEEEEEEeccCC
Confidence 45666899999999999999987
No 30
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.66 E-value=2e-16 Score=151.58 Aligned_cols=180 Identities=16% Similarity=0.296 Sum_probs=150.6
Q ss_pred cCCCccccccc---CCCccccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccccCC-CCEEEEEc-CCCce-EEc
Q 020076 47 RNKLLKDLSTW---GIGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDDLG-FDGCVILN-RIEFL-ERK 120 (331)
Q Consensus 47 ~~~~L~~~tt~---~iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d~~-~~GvVI~~-~l~~i-~~~ 120 (331)
..++|..|++- +..|+..++..|++++||.+++++|.++++.+++.||-+.++....+ +|-+|+++ .|+.+ .+|
T Consensus 71 ~~edL~~~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSVPvfDEiVlsl~~mNKi~sfD 150 (511)
T KOG1232|consen 71 DKEDLENFNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSVPVFDEIVLSLGLMNKILSFD 150 (511)
T ss_pred ChHHHhhhhhHHHHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcccchHHHhhhhhhhccccccc
Confidence 34577777752 78899999999999999999999999999999999999999987765 58899998 58876 466
Q ss_pred C-CeEEEEcCCCcHHHHHHHHHHcCCC-cccCCCCccccchHHHHhhhhc-----cCccccceeeEEEEEeCCCcEE---
Q 020076 121 E-TGIYRVGSGFRFNSLGMQCCTEGFT-GLEFAAGIPGTVGGAVYMNAGA-----NGQETAGVIDSVDIVTLGGKLQ--- 190 (331)
Q Consensus 121 ~-~~~v~v~AG~~l~~L~~~~~~~Gl~-GlE~l~gIPgTVGGav~mNaGa-----yG~ei~d~v~sv~vv~~~G~v~--- 190 (331)
+ .+.++++||+.+.++-.++.++|+. .|+.-+-=...|||.+++|||. ||. +.-.|+.+++|+++|++.
T Consensus 151 evsGil~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGs-LHgsvLGle~Vlp~G~vl~~~ 229 (511)
T KOG1232|consen 151 EVSGILKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGS-LHGSVLGLEVVLPNGTVLDLL 229 (511)
T ss_pred cccceEEeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecc-cccceeeeEEEcCCCchhhhh
Confidence 5 4899999999999999999999984 3333332235799999999994 996 899999999999999886
Q ss_pred -EEecCccccccccccccCCCCceEEEEEEEEeEeCCh
Q 020076 191 -RVSRNDLKFGYRSSSFQDMKDLAAIVAVTFQLQESTS 227 (331)
Q Consensus 191 -~~~~~el~~~YR~s~f~~~g~~gII~~a~lkL~~~~~ 227 (331)
++.++.-.+...+-.+.+||++||||++.+-..|.+.
T Consensus 230 ~slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~kpk 267 (511)
T KOG1232|consen 230 SSLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPPKPK 267 (511)
T ss_pred hhhcccCccccchhheecCCceeeEEeeEEEeecCCCc
Confidence 3445667777778877889999999999998887653
No 31
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.66 E-value=5.2e-16 Score=151.73 Aligned_cols=156 Identities=21% Similarity=0.260 Sum_probs=128.5
Q ss_pred ccccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcc---cccccCCCCEEEEEc-CCCc-eEEcC-CeEEEEcCCCcHH
Q 020076 61 GPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSN---CLFDDLGFDGCVILN-RIEF-LERKE-TGIYRVGSGFRFN 134 (331)
Q Consensus 61 G~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSN---ll~~d~~~~GvVI~~-~l~~-i~~~~-~~~v~v~AG~~l~ 134 (331)
..|.-+-+|+|++||.++|+.|++++..+++.|.||+ +.++| |.+|++ .|+. +++++ ..+|+|+||+++.
T Consensus 48 c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ctd----g~lisl~~lnkVv~~dpe~~tvTV~aGirlr 123 (518)
T KOG4730|consen 48 CKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCTD----GLLISLDKLNKVVEFDPELKTVTVQAGIRLR 123 (518)
T ss_pred hhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCcceecc----ccEEEhhhhccceeeCchhceEEeccCcCHH
Confidence 3467778899999999999999999999999999974 55666 478888 5777 47774 4789999999999
Q ss_pred HHHHHHHHcCCCcccCCCCccc-cchHHHHhhhhccCccc--cceeeEEEEEe----CCCcEEEEecC---ccccccccc
Q 020076 135 SLGMQCCTEGFTGLEFAAGIPG-TVGGAVYMNAGANGQET--AGVIDSVDIVT----LGGKLQRVSRN---DLKFGYRSS 204 (331)
Q Consensus 135 ~L~~~~~~~Gl~GlE~l~gIPg-TVGGav~mNaGayG~ei--~d~v~sv~vv~----~~G~v~~~~~~---el~~~YR~s 204 (331)
+|++++.+.||+ |.++..|-| |||| .|..|+||.+. .|++.++.++. .+|.+++++++ |++-+-|-|
T Consensus 124 QLie~~~~~Gls-L~~~~si~e~sVgG--ii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F~AAkvS 200 (518)
T KOG4730|consen 124 QLIEELAKLGLS-LPNAPSISEQSVGG--IISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELFNAAKVS 200 (518)
T ss_pred HHHHHHHhcCcc-ccCCCceecceeee--EEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHHhhhhhc
Confidence 999999999998 888888876 8999 55779999764 47777777764 47989999875 666666666
Q ss_pred cccCCCCceEEEEEEEEeEeCCh
Q 020076 205 SFQDMKDLAAIVAVTFQLQESTS 227 (331)
Q Consensus 205 ~f~~~g~~gII~~a~lkL~~~~~ 227 (331)
. |.+|||.++||++.|...
T Consensus 201 L----G~LGVIs~VTl~~vp~Fk 219 (518)
T KOG4730|consen 201 L----GVLGVISQVTLSVVPAFK 219 (518)
T ss_pred c----cceeEEEEEEEEEEecce
Confidence 3 678999999999999764
No 32
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.56 E-value=6.9e-14 Score=134.67 Aligned_cols=169 Identities=18% Similarity=0.155 Sum_probs=134.6
Q ss_pred CCccccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCccccc---ccCCCCEEEEEc---CCCceE-Ec-CCeEEEEcCC
Q 020076 59 IGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLF---DDLGFDGCVILN---RIEFLE-RK-ETGIYRVGSG 130 (331)
Q Consensus 59 iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~---~d~~~~GvVI~~---~l~~i~-~~-~~~~v~v~AG 130 (331)
+.-.|++++.|++.+|++++++.|.+|+.-+.++|||+++.. ....-.-.+|++ .|++|- +| ++-+++++||
T Consensus 157 f~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~~eaG 236 (613)
T KOG1233|consen 157 FPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCRAEAG 236 (613)
T ss_pred cCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEEEecC
Confidence 334689999999999999999999999999999999987642 222223456665 367753 55 4678999999
Q ss_pred CcHHHHHHHHHHcCCC-cccCCCCccccchHHHHhhhh-----ccCccccceeeEEEEEeCCCcEE-EEecC--cccccc
Q 020076 131 FRFNSLGMQCCTEGFT-GLEFAAGIPGTVGGAVYMNAG-----ANGQETAGVIDSVDIVTLGGKLQ-RVSRN--DLKFGY 201 (331)
Q Consensus 131 ~~l~~L~~~~~~~Gl~-GlE~l~gIPgTVGGav~mNaG-----ayG~ei~d~v~sv~vv~~~G~v~-~~~~~--el~~~Y 201 (331)
+.-.+|.+.+.+.|++ |-|.-+-=-.|+||+|++.|. -||- |.|.|+.+.+|++.|.+. .++.. .++...
T Consensus 237 IvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGN-IEDLVVh~~mVtP~Giiek~Cq~PRmS~GPDi 315 (613)
T KOG1233|consen 237 IVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGN-IEDLVVHLNMVTPKGIIEKQCQVPRMSSGPDI 315 (613)
T ss_pred cchHHHHHHHhhcCcccCCCCCceeeecccceeeeccccccccccCC-hhHheEEEEeecCcchhhhhhcCCcccCCCCc
Confidence 9999999999999996 555544444899999998765 3895 999999999999999653 23332 456777
Q ss_pred ccccccCCCCceEEEEEEEEeEeCChH
Q 020076 202 RSSSFQDMKDLAAIVAVTFQLQESTSA 228 (331)
Q Consensus 202 R~s~f~~~g~~gII~~a~lkL~~~~~~ 228 (331)
.+-++.++|++|||+++++|+.|.++.
T Consensus 316 hh~IlGSEGTLGVitEvtiKirPiPe~ 342 (613)
T KOG1233|consen 316 HHIILGSEGTLGVITEVTIKIRPIPEV 342 (613)
T ss_pred ceEEeccCcceeEEEEEEEEEeechhh
Confidence 777888899999999999999998754
No 33
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=97.87 E-value=9.3e-05 Score=65.31 Aligned_cols=145 Identities=16% Similarity=0.213 Sum_probs=88.9
Q ss_pred EEEEeCCHHHHHHHHHHHHHCCCceEEeCCCccccccc-CC--CCEEEEEc-C---CCceEEcCCeEEEEcCCCcHHHHH
Q 020076 65 YFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDD-LG--FDGCVILN-R---IEFLERKETGIYRVGSGFRFNSLG 137 (331)
Q Consensus 65 ~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d-~~--~~GvVI~~-~---l~~i~~~~~~~v~v~AG~~l~~L~ 137 (331)
-|+.|.|.+|+.++++ . +-...+++|||.+...- .+ ....+|++ + ++.|+.+ ++.+++||++++.++.
T Consensus 4 ~~~~P~sl~ea~~ll~---~-~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~-~~~l~IGA~vtl~~l~ 78 (171)
T PF00941_consen 4 EYFRPKSLEEALELLA---K-GPDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISED-DGGLRIGAAVTLSELE 78 (171)
T ss_dssp EEEE-SSHHHHHHHHH---H-GTTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEE-TSEEEEETTSBHHHHH
T ss_pred EEEccCCHHHHHHHHh---c-CCCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEe-ccEEEECCCccHHHHh
Confidence 4789999999999988 2 23678999999876422 22 24478887 3 4456655 5789999999999999
Q ss_pred HHHH-HcCCC----cccCCCCcc----ccchHHHHhhhhccCcccccee----eEEEEEeCCCcEEEEecCccccccccc
Q 020076 138 MQCC-TEGFT----GLEFAAGIP----GTVGGAVYMNAGANGQETAGVI----DSVDIVTLGGKLQRVSRNDLKFGYRSS 204 (331)
Q Consensus 138 ~~~~-~~Gl~----GlE~l~gIP----gTVGGav~mNaGayG~ei~d~v----~sv~vv~~~G~v~~~~~~el~~~YR~s 204 (331)
+.-. ++.+. -+...++.+ ||+||.+.. +..++ ++.-.+ -.|++...+| .++++-+|..-+|+..
T Consensus 79 ~~~~~~~~~p~L~~~~~~ias~~IRn~aTiGGNl~~-~~~~s-D~~~~Llal~A~v~i~~~~g-~r~~~~~~f~~g~~~~ 155 (171)
T PF00941_consen 79 ESPLIQQYFPALAQAARRIASPQIRNRATIGGNLCN-ASPAS-DLAPALLALDARVEIASPDG-TRTVPLEDFFTGPRKT 155 (171)
T ss_dssp HHHHHHHHHHHHHHHHCTSS-HHHHTT-BHHHHHHH-TBTT--SHHHHHHHTT-EEEEEETTE-EEEEEGGGGEECTTEE
T ss_pred hcchhhhhHHHHHHHHHHhCCHhHeeeeeecccccc-Ccccc-cHHHHHHHhCcEEEEEcCCe-eEEEEHHHhcCccccc
Confidence 8611 11110 122233333 799999943 32222 111111 1466777787 5678888988888888
Q ss_pred cccCCCCceEEEEEEE
Q 020076 205 SFQDMKDLAAIVAVTF 220 (331)
Q Consensus 205 ~f~~~g~~gII~~a~l 220 (331)
.++. ..+|+++.+
T Consensus 156 ~l~~---~eli~~I~i 168 (171)
T PF00941_consen 156 DLEP---GELITSIRI 168 (171)
T ss_dssp SS-T---TEEEEEEEE
T ss_pred cCCC---CcEEEEEEC
Confidence 7742 258888876
No 34
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=97.68 E-value=5.8e-05 Score=73.85 Aligned_cols=103 Identities=24% Similarity=0.317 Sum_probs=80.0
Q ss_pred EEc-CCeEEEEcCCCcHHHHHHHHHHcCCCcccCCCCcc-ccchHHHHhhhh------ccCccccceeeEEEEEeCCCcE
Q 020076 118 ERK-ETGIYRVGSGFRFNSLGMQCCTEGFTGLEFAAGIP-GTVGGAVYMNAG------ANGQETAGVIDSVDIVTLGGKL 189 (331)
Q Consensus 118 ~~~-~~~~v~v~AG~~l~~L~~~~~~~Gl~GlE~l~gIP-gTVGGav~mNaG------ayG~ei~d~v~sv~vv~~~G~v 189 (331)
++| +..+|+|++++++.++.+++...|++ |.-+.-+- -||||.+. ..| .||. ..+.+.+-++|++||++
T Consensus 116 eld~ekmtvrvEP~Vtmgqis~~lip~g~t-LaV~~EldDlTvGGLin-G~Gies~ShkyGl-fq~~~~aYEvVladGel 192 (543)
T KOG1262|consen 116 ELDEEKMTVRVEPLVTMGQISKFLIPKGYT-LAVLPELDDLTVGGLIN-GVGIESSSHKYGL-FQHICTAYEVVLADGEL 192 (543)
T ss_pred hcchhcceEEecCCccHHHHHHHhccCCce-eeeecccccceecceee-ecccccccchhhh-HHhhhheeEEEecCCeE
Confidence 444 35789999999999999999999998 33333332 59998763 233 4787 88999999999999999
Q ss_pred EEEecC----ccccccccccccCCCCceEEEEEEEEeEeCCh
Q 020076 190 QRVSRN----DLKFGYRSSSFQDMKDLAAIVAVTFQLQESTS 227 (331)
Q Consensus 190 ~~~~~~----el~~~YR~s~f~~~g~~gII~~a~lkL~~~~~ 227 (331)
++++++ |++|+.--| .|++|..++||+|+.|..+
T Consensus 193 v~~t~dne~sdLfyaiPWS----qGTlgfLVaatiriIkvK~ 230 (543)
T KOG1262|consen 193 VRVTPDNEHSDLFYAIPWS----QGTLGFLVAATIRIIKVKK 230 (543)
T ss_pred EEecCCcccCceEEEcccc----cCchheeeeeEEEEEeccc
Confidence 998865 566665444 4788999999999987543
No 35
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=97.23 E-value=0.0028 Score=60.64 Aligned_cols=148 Identities=15% Similarity=0.192 Sum_probs=90.9
Q ss_pred EEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccc--cC-CCCEEEEEc-C---CCceEEcCCeEEEEcCCCcHHHHH
Q 020076 65 YFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFD--DL-GFDGCVILN-R---IEFLERKETGIYRVGSGFRFNSLG 137 (331)
Q Consensus 65 ~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~--d~-~~~GvVI~~-~---l~~i~~~~~~~v~v~AG~~l~~L~ 137 (331)
-++.|+|.+|+.++++. +. ...+++|||.++.. .. .....+|++ + |+.|+..+++.+++||++++.++.
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~ 81 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQII 81 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHh
Confidence 47889999999988764 22 46789999998642 21 123567776 3 455665455679999999999998
Q ss_pred HH-HHHcCCC----cccCCCCcc----ccchHHHHhhhhccCccccceee----EEEEEeCCCcEEEEecCccccccccc
Q 020076 138 MQ-CCTEGFT----GLEFAAGIP----GTVGGAVYMNAGANGQETAGVID----SVDIVTLGGKLQRVSRNDLKFGYRSS 204 (331)
Q Consensus 138 ~~-~~~~Gl~----GlE~l~gIP----gTVGGav~mNaGayG~ei~d~v~----sv~vv~~~G~v~~~~~~el~~~YR~s 204 (331)
+. ..+.-+. -+...++.. ||+||.+.+... ++ ++--.+. .|++...+|+ ++++-+|..-+|+..
T Consensus 82 ~~~~i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a~p-~s-D~~~~Llal~A~v~i~~~~g~-R~vp~~df~~g~~~t 158 (291)
T PRK09971 82 EDPIIQKHLPALAEAAVSIGGPQIRNVATIGGNICNGAT-SA-DSAPPLFALDAKLEIHSPNGV-RFVPINGFYTGPGKV 158 (291)
T ss_pred cChHHHHHhHHHHHHHHHhCCHHHhcceecccccccCCc-ch-hHHHHHHHcCCEEEEEcCCCc-EEEEHHHhcCCcccc
Confidence 62 1111111 111112221 799998864322 11 1111111 3455566774 667888988888887
Q ss_pred cccCCCCceEEEEEEEEe
Q 020076 205 SFQDMKDLAAIVAVTFQL 222 (331)
Q Consensus 205 ~f~~~g~~gII~~a~lkL 222 (331)
.+.. + -+|+++.+..
T Consensus 159 ~l~~-~--Eil~~I~iP~ 173 (291)
T PRK09971 159 SLEH-D--EILVAFIIPP 173 (291)
T ss_pred ccCC-C--ceEEEEEeCC
Confidence 7652 2 4899998864
No 36
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=97.22 E-value=0.0014 Score=66.69 Aligned_cols=147 Identities=12% Similarity=0.091 Sum_probs=94.1
Q ss_pred cccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccc--cCC-CCEEEEEc-C---CCceEEcCCeEEEEcCCCcHH
Q 020076 62 PCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFD--DLG-FDGCVILN-R---IEFLERKETGIYRVGSGFRFN 134 (331)
Q Consensus 62 ~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~--d~~-~~GvVI~~-~---l~~i~~~~~~~v~v~AG~~l~ 134 (331)
...-|+.|.|.+|+.++++. +. ...+++|||.+... ... ....+|++ + |+.|+.+ ++.+++||++++.
T Consensus 191 ~~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~-~~~l~IGA~vT~~ 265 (467)
T TIGR02963 191 GGERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEET-DDGIEIGAAVTLT 265 (467)
T ss_pred CCceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEc-CCEEEEecCCcHH
Confidence 44568999999999988764 32 46789999998543 211 23467886 3 4456554 4579999999999
Q ss_pred HHHHHHHHc--CCC-cccCCCCcc----ccchHHHHhhhhccCccccceee-------EEEEEeCCCcEEEEecCccccc
Q 020076 135 SLGMQCCTE--GFT-GLEFAAGIP----GTVGGAVYMNAGANGQETAGVID-------SVDIVTLGGKLQRVSRNDLKFG 200 (331)
Q Consensus 135 ~L~~~~~~~--Gl~-GlE~l~gIP----gTVGGav~mNaGayG~ei~d~v~-------sv~vv~~~G~v~~~~~~el~~~ 200 (331)
++.+.+.+. .|. -+...++.. |||||.|.+.. . ++|... .|++...+| .++++-+|..-+
T Consensus 266 el~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~as-P----~sD~~p~LlALdA~v~l~~~~G-~R~vpl~dF~~g 339 (467)
T TIGR02963 266 DAYAALAKRYPELGELLRRFASLQIRNAGTLGGNIANGS-P----IGDSPPALIALGARLTLRKGEG-RRTLPLEDFFID 339 (467)
T ss_pred HHHHHHHHHhHHHHHHHHHhCCHHHcCceecccccccCC-C----chHHHHHHHHcCCEEEEEcCCC-cEEEeHHHhhcc
Confidence 997654433 121 112222222 79999886432 2 233221 345556666 466777888889
Q ss_pred cccccccCCCCceEEEEEEEEe
Q 020076 201 YRSSSFQDMKDLAAIVAVTFQL 222 (331)
Q Consensus 201 YR~s~f~~~g~~gII~~a~lkL 222 (331)
||...+.. + .||+++.+..
T Consensus 340 ~~kt~L~~-~--EiI~~I~iP~ 358 (467)
T TIGR02963 340 YGKTDRQP-G--EFVEALHVPR 358 (467)
T ss_pred cccccCCC-C--ceEEEEEecC
Confidence 99887652 2 4899998864
No 37
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=96.62 E-value=0.0039 Score=60.52 Aligned_cols=147 Identities=19% Similarity=0.251 Sum_probs=88.7
Q ss_pred EEEeCCHHHHHHHHHHHHHCCCceEEeCCCccccccc---CCCCEEEEEc-C---CCceEEcCCeEEEEcCCCcHHHHHH
Q 020076 66 FVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDD---LGFDGCVILN-R---IEFLERKETGIYRVGSGFRFNSLGM 138 (331)
Q Consensus 66 ~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d---~~~~GvVI~~-~---l~~i~~~~~~~v~v~AG~~l~~L~~ 138 (331)
++.|+|.+|..++++. +. .-.+++||+.++..- ......+|++ + ++.|+.+ ++.+++||++++.++.+
T Consensus 7 ~~~P~sl~eA~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~-~~~l~IGA~vT~~~l~~ 81 (321)
T TIGR03195 7 TLRPASLADAVAALAA---HP-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTL-ADGLRIGAGVTLAALAE 81 (321)
T ss_pred EECCCCHHHHHHHHhh---CC-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEec-CCEEEEeccCcHHHHhh
Confidence 7889999999888764 32 356899999885421 1223567776 3 4556654 46799999999999976
Q ss_pred HHH-HcCCCc----ccCCCCcc----ccchHHHHhhhhc---------------------------------cCccccce
Q 020076 139 QCC-TEGFTG----LEFAAGIP----GTVGGAVYMNAGA---------------------------------NGQETAGV 176 (331)
Q Consensus 139 ~~~-~~Gl~G----lE~l~gIP----gTVGGav~mNaGa---------------------------------yG~ei~d~ 176 (331)
.-. +.-+.. +...++.. ||+||.+.+.+.| +....+|.
T Consensus 82 ~~~i~~~~p~L~~a~~~ias~qIRN~aTiGGNi~~~~~c~~~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~c~a~p~sD~ 161 (321)
T TIGR03195 82 DALVRTRWPALAQAARAVAGPTHRAAATLGGNLCLDTRCIYYNQSEWWRSGNGYCLKYRGDKCHVAPKSDRCYAAFSGDV 161 (321)
T ss_pred ChhhHhHhHHHHHHHHHhCCHHHhCceecHHhhhccCCCcccccccccccccccccccCCccccccCCCccccCCCchHH
Confidence 311 111111 11122222 7999999875432 22224455
Q ss_pred ee-------EEEEEeCCCcEEEEecCcccc--ccccccccCCCCceEEEEEEEE
Q 020076 177 ID-------SVDIVTLGGKLQRVSRNDLKF--GYRSSSFQDMKDLAAIVAVTFQ 221 (331)
Q Consensus 177 v~-------sv~vv~~~G~v~~~~~~el~~--~YR~s~f~~~g~~gII~~a~lk 221 (331)
+- .|++..++|+ ++++-+|..- +++...+.. + -+|+++.+.
T Consensus 162 ~~~LlAldA~v~i~~~~g~-R~vpl~dF~~~~g~~~t~L~~-~--Eiit~I~iP 211 (321)
T TIGR03195 162 APALLVLDAEAEIVGPAGV-RRVPLAELYVEDGAAHLTLEP-G--EVLAAVRVP 211 (321)
T ss_pred HHHHHHcCCEEEEEeCCcc-EEEEHHHHhcccCCccccCCC-C--CeEEEEEec
Confidence 43 3566666774 5677777655 343444432 2 489988875
No 38
>PRK09799 putative oxidoreductase; Provisional
Probab=96.58 E-value=0.0032 Score=59.28 Aligned_cols=97 Identities=19% Similarity=0.183 Sum_probs=62.5
Q ss_pred EEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccccCC-CCEEEEEc-C--CCceEEcCCeEEEEcCCCcHHHHHHHH
Q 020076 65 YFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDDLG-FDGCVILN-R--IEFLERKETGIYRVGSGFRFNSLGMQC 140 (331)
Q Consensus 65 ~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d~~-~~GvVI~~-~--l~~i~~~~~~~v~v~AG~~l~~L~~~~ 140 (331)
-|+.|+|.+|+.++++. ++-...+++||+.+...... .+..+|++ + ++.|+. +++.+++||++++.++.+..
T Consensus 4 ~y~~P~sl~Ea~~ll~~---~~~~a~ilAGGT~L~~~~~~~~~~~lIdi~~ieL~~I~~-~~~~l~IGA~vT~~~l~~~~ 79 (258)
T PRK09799 4 QFFRPDSVEQALELKRR---YQDEAVWFAGGSKLNATPTRTDKKIAISLQDLELDWIEW-DNGALRIGAMSRLQPLRDAR 79 (258)
T ss_pred cEeCCCCHHHHHHHHHh---CCCCCEEEecCCChHhhhCCCCCCEEEEcCCCCCCeEEe-cCCEEEEccCCcHHHHHhCc
Confidence 47899999999988763 43346789999998543221 24567876 3 445554 34689999999999998743
Q ss_pred HHc-CCC-cccCCCCcc----ccchHHHHhh
Q 020076 141 CTE-GFT-GLEFAAGIP----GTVGGAVYMN 165 (331)
Q Consensus 141 ~~~-Gl~-GlE~l~gIP----gTVGGav~mN 165 (331)
.-. .|. -+...++.+ ||+||.+...
T Consensus 80 ~~~~~L~~a~~~vas~qIRN~aTiGGNl~~a 110 (258)
T PRK09799 80 FIPAALREALGFVYSRHLRNQSTIGGEIAAR 110 (258)
T ss_pred ccHHHHHHHHHHhCCHHHhccchhHHHhhcC
Confidence 111 121 111222222 7999998754
No 39
>PLN02906 xanthine dehydrogenase
Probab=96.45 E-value=0.012 Score=67.04 Aligned_cols=148 Identities=13% Similarity=0.171 Sum_probs=89.2
Q ss_pred cEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccc--cC-CCCEEEEEc-C---CCceEEcCCeEEEEcCCCcHHHH
Q 020076 64 NYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFD--DL-GFDGCVILN-R---IEFLERKETGIYRVGSGFRFNSL 136 (331)
Q Consensus 64 ~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~--d~-~~~GvVI~~-~---l~~i~~~~~~~v~v~AG~~l~~L 136 (331)
.-++.|+|.+|+.++++. +. ...++.|||.+... .. .....+|++ + |+.|+.+ ++.+++||++++.++
T Consensus 229 ~~~~~P~tl~ea~~ll~~---~~-~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~-~~~l~IGA~vT~~el 303 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAE---YP-DAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVK-DDGLEIGAAVRLSEL 303 (1319)
T ss_pred ceEECcCCHHHHHHHHHh---CC-CCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEec-CCEEEEecCCcHHHH
Confidence 358899999999988764 22 35789999988542 21 123567876 3 4556543 467999999999999
Q ss_pred HHHHHHcC--CC------------cccCCCCcc----ccchHHHHhhhhccCccccceee----EEEEEeCCCcEEEEec
Q 020076 137 GMQCCTEG--FT------------GLEFAAGIP----GTVGGAVYMNAGANGQETAGVID----SVDIVTLGGKLQRVSR 194 (331)
Q Consensus 137 ~~~~~~~G--l~------------GlE~l~gIP----gTVGGav~mNaGayG~ei~d~v~----sv~vv~~~G~v~~~~~ 194 (331)
.+.+.+.= .. -+...++.+ |||||.|.+..- .+ ++.-.++ .|++...+|..++++-
T Consensus 304 ~~~l~~~i~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~asP-~s-D~~p~LlAl~A~v~l~s~~g~~R~vpl 381 (1319)
T PLN02906 304 QNLFRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVASIGGNICTASP-IS-DLNPLWMAAGATFVIISCDGDIRSVPA 381 (1319)
T ss_pred HHHHHHHhhhcchhhhHHHHHHHHHHHHhCCHhhcCceechhhhccCCC-ch-hHHHHHHHcCcEEEEEcCCCCeEEEEH
Confidence 98643320 00 012223332 799999865322 11 1111111 2344445555577777
Q ss_pred CccccccccccccCCCCceEEEEEEEE
Q 020076 195 NDLKFGYRSSSFQDMKDLAAIVAVTFQ 221 (331)
Q Consensus 195 ~el~~~YR~s~f~~~g~~gII~~a~lk 221 (331)
+|.+-+||...+.. + -+|+++.+-
T Consensus 382 ~dFf~g~~kt~L~~-~--Eil~~I~iP 405 (1319)
T PLN02906 382 SDFFLGYRKVDLKP-D--EILLSVFLP 405 (1319)
T ss_pred HHhcCccccccCCC-C--ceEEEEEcc
Confidence 78888888776642 1 367777664
No 40
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=95.91 E-value=0.036 Score=52.17 Aligned_cols=95 Identities=18% Similarity=0.147 Sum_probs=59.1
Q ss_pred EEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccccC-CCCEEEEEc-C--CCceEEcCCeEEEEcCCCcHHHHHHHHH
Q 020076 66 FVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDDL-GFDGCVILN-R--IEFLERKETGIYRVGSGFRFNSLGMQCC 141 (331)
Q Consensus 66 ~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d~-~~~GvVI~~-~--l~~i~~~~~~~v~v~AG~~l~~L~~~~~ 141 (331)
++.|+|.+|..++++. ++-.-.+++||+.+...-. .....+|++ + |+.|+.+ ++.+++||.+++.++.+.-.
T Consensus 4 y~~P~sl~Ea~~ll~~---~~~~a~~lAGGTdL~~~~~~~~~~~lIdl~~ieL~~I~~~-~~~l~IGA~~t~~~l~~~~~ 79 (257)
T TIGR03312 4 FFRPESTIQALELKKR---HTGVAVWFAGGSKLNATPTRTDKKVAISLDKLALDKIELQ-GGALHIGAMCHLQSLIDNEL 79 (257)
T ss_pred eECCCCHHHHHHHHHh---CCCCCEEEecCcchhhhhcccCCCEEEEcCCCCCCcEEec-CCEEEEEeCCcHHHHHhCcc
Confidence 6789999999887763 3223578999998864321 122467776 3 4556543 46899999999999875311
Q ss_pred -HcCCC-cccCCCCcc-----ccchHHHHhh
Q 020076 142 -TEGFT-GLEFAAGIP-----GTVGGAVYMN 165 (331)
Q Consensus 142 -~~Gl~-GlE~l~gIP-----gTVGGav~mN 165 (331)
...|. -.... +-| ||+||.+...
T Consensus 80 ~~~~L~~aa~~v-a~~qIRN~gTlGGNl~~a 109 (257)
T TIGR03312 80 TPAALKEALGFV-YSRHIRNQATIGGEIAAF 109 (257)
T ss_pred hHHHHHHHHHHh-CCHHHhccccHHHHhhcC
Confidence 10111 00111 223 7999998754
No 41
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=95.77 E-value=0.044 Score=62.52 Aligned_cols=149 Identities=12% Similarity=0.215 Sum_probs=84.8
Q ss_pred cccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccc--cCC-CCEEEEEc-C---CCceEEcCCeEEEEcCCCcHH
Q 020076 62 PCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFD--DLG-FDGCVILN-R---IEFLERKETGIYRVGSGFRFN 134 (331)
Q Consensus 62 ~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~--d~~-~~GvVI~~-~---l~~i~~~~~~~v~v~AG~~l~ 134 (331)
...-++.|.|.+|+.++++. +. ...++.|||.+++. ... ..-.+|++ + |+.|+.+ ++.+++||++++.
T Consensus 235 ~~~~~~~P~tl~ea~~ll~~---~~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~-~~~l~IGA~vT~~ 309 (1330)
T TIGR02969 235 ERMMWISPVTLKELLEAKFK---YP-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHT-GDGLTLGAGLSLA 309 (1330)
T ss_pred CCceEECCCCHHHHHHHHHh---CC-CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEc-CCEEEEeccccHH
Confidence 33568899999999988764 22 46789999998542 211 22367776 3 4455543 4689999999999
Q ss_pred HHHHHHHHc----------CCCc----ccCCCCcc----ccchHHHHhhhhccCccccceee----EEEEEeCCCcEEEE
Q 020076 135 SLGMQCCTE----------GFTG----LEFAAGIP----GTVGGAVYMNAGANGQETAGVID----SVDIVTLGGKLQRV 192 (331)
Q Consensus 135 ~L~~~~~~~----------Gl~G----lE~l~gIP----gTVGGav~mNaGayG~ei~d~v~----sv~vv~~~G~v~~~ 192 (331)
++.+.+.+. -+.. +...++-+ ||+||.|.+- ...+ ++.-.++ .|++...+|+ +++
T Consensus 310 el~~~l~~~i~~~p~~~~~~~p~L~~a~~~ias~qIRN~gTlGGNi~~a-sP~s-D~~p~LlAl~A~v~l~s~~g~-R~v 386 (1330)
T TIGR02969 310 QVKDILADVVQKLPEETTQTYRALLKHLGTLAGSQIRNMASLGGHIISR-HLDS-DLNPLLAVGNCTLNLLSKEGK-RQI 386 (1330)
T ss_pred HHHHHHHHhhhcCchhhhHHHHHHHHHHHHhCChhhcccccchhhcccC-CCch-hHHHHHHHcCcEEEEecCCce-EEE
Confidence 998864422 1111 23333333 7999988642 2111 1111111 2334445553 556
Q ss_pred ecCcccc-ccccccccCCCCceEEEEEEEE
Q 020076 193 SRNDLKF-GYRSSSFQDMKDLAAIVAVTFQ 221 (331)
Q Consensus 193 ~~~el~~-~YR~s~f~~~g~~gII~~a~lk 221 (331)
+-+|.++ +||...+.. + -||+++.+-
T Consensus 387 pl~dff~~~~~~t~L~~-~--Eil~~I~iP 413 (1330)
T TIGR02969 387 PLSEQFLSKCPDADLKP-Q--EILVSVNIP 413 (1330)
T ss_pred ehHHhhhcccccccCCC-C--ceEEEEEec
Confidence 6555553 666555432 1 256666554
No 42
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=95.26 E-value=0.061 Score=50.67 Aligned_cols=132 Identities=11% Similarity=0.065 Sum_probs=76.4
Q ss_pred eCCHHHHHHHHHHHHHCCCceEEeCCCccccccc-CC---CCEEEEEc-C---CCceEEcCCeEEEEcCCCcHHHHHHHH
Q 020076 69 VFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFDD-LG---FDGCVILN-R---IEFLERKETGIYRVGSGFRFNSLGMQC 140 (331)
Q Consensus 69 P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~d-~~---~~GvVI~~-~---l~~i~~~~~~~v~v~AG~~l~~L~~~~ 140 (331)
|+|.+|+.++++. +. ...+++|||.+...- .+ ....+|++ + |+.|+. +++.+++||++++.++.+.-
T Consensus 1 P~sl~ea~~ll~~---~~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~-~~~~l~IGA~vt~~~l~~~~ 75 (264)
T TIGR03199 1 PAALDEAWSLLEK---AP-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGIST-SDTHVSIGALTTLNECRKNP 75 (264)
T ss_pred CCCHHHHHHHHHh---CC-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEe-cCCEEEEecCCcHHHHhhCh
Confidence 7889998888774 22 467899999885431 11 13567776 3 455654 35789999999999997521
Q ss_pred -HHcCCC----cccCCCCcc----ccchHHHHhhhhccCccccceee-------EEEEEeCCCcEEEEecCccccccccc
Q 020076 141 -CTEGFT----GLEFAAGIP----GTVGGAVYMNAGANGQETAGVID-------SVDIVTLGGKLQRVSRNDLKFGYRSS 204 (331)
Q Consensus 141 -~~~Gl~----GlE~l~gIP----gTVGGav~mNaGayG~ei~d~v~-------sv~vv~~~G~v~~~~~~el~~~YR~s 204 (331)
.+..+. -+...++.. ||+||.+.+.+ +|.+- .|++.. +| .++++-+|..-+ .
T Consensus 76 ~i~~~~p~L~~a~~~ia~~qIRN~aTlGGNl~~~~-------sD~~p~Llal~A~v~i~~-~g-~r~vp~~~f~~~--~- 143 (264)
T TIGR03199 76 LIKRALPCFVDAASAIAAPGVRNRATIGGNIASGI-------GDFIPALLVLGAELIVYQ-KE-LIRLPLGAWLSE--E- 143 (264)
T ss_pred HhHhHhHHHHHHHHHhcCHHHhcceecHHhccCcc-------cchHHHHHHcCCEEEEEe-CC-EEEEEHHHhhhc--c-
Confidence 111111 111122222 79999997542 23321 344555 55 455666564322 1
Q ss_pred cccCCCCceEEEEEEE
Q 020076 205 SFQDMKDLAAIVAVTF 220 (331)
Q Consensus 205 ~f~~~g~~gII~~a~l 220 (331)
.+. ...+|+++.+
T Consensus 144 ~l~---~~Eii~~I~i 156 (264)
T TIGR03199 144 DFK---PTAIVTRVII 156 (264)
T ss_pred CCC---CCcEEEEEEE
Confidence 222 1248998888
No 43
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=94.08 E-value=0.3 Score=46.75 Aligned_cols=146 Identities=16% Similarity=0.200 Sum_probs=81.3
Q ss_pred EEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccc-cCC--CCEEEEEc-CCC---ceEEcCCeEEEEcCCCcHHHHH
Q 020076 65 YFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFD-DLG--FDGCVILN-RIE---FLERKETGIYRVGSGFRFNSLG 137 (331)
Q Consensus 65 ~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~-d~~--~~GvVI~~-~l~---~i~~~~~~~v~v~AG~~l~~L~ 137 (331)
-+++|.|.+|..++++ +.. ...+++||||++.- +.+ .+.-+|++ ++. .+...+++.+++||-+++.++.
T Consensus 5 ~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~ei~ 80 (284)
T COG1319 5 EYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTEIA 80 (284)
T ss_pred EEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHHHHH
Confidence 4788999998877776 344 67899999998742 221 13345564 442 2333345679999999999998
Q ss_pred HHHHHcCCC----cccCCCCcc-----ccchHHHHhhhhccCccccceee-------EEEEEeCCCcEEEEecCcccccc
Q 020076 138 MQCCTEGFT----GLEFAAGIP-----GTVGGAVYMNAGANGQETAGVID-------SVDIVTLGGKLQRVSRNDLKFGY 201 (331)
Q Consensus 138 ~~~~~~Gl~----GlE~l~gIP-----gTVGGav~mNaGayG~ei~d~v~-------sv~vv~~~G~v~~~~~~el~~~Y 201 (331)
+.-.-+.+. -.....+-| +|+||.+..+... +|... .|++..+.| .++++-+|..-+-
T Consensus 81 ~~~~~~~~~p~L~ea~~~ia~~qvRN~aTiGGn~c~a~p~-----aD~~~aLlaLdA~v~~~~~~g-~r~i~~~~f~~~p 154 (284)
T COG1319 81 RHPAVRRIPPALSEAASAIASPQVRNRATIGGNLCNADPA-----ADLAPALLALDAEVEIRSPGG-ERTIPIEDFFRGP 154 (284)
T ss_pred hChhhhhhchHHHHHHHHhcChhhcceeeecchhccCCCc-----hhhHHHHHHcCCEEEEecCCc-cEEEEHHHhhcCc
Confidence 544222221 111122233 5888876544332 22221 233444555 4566655543222
Q ss_pred ccccccCCCCceEEEEEEEEeE
Q 020076 202 RSSSFQDMKDLAAIVAVTFQLQ 223 (331)
Q Consensus 202 R~s~f~~~g~~gII~~a~lkL~ 223 (331)
-...+. ..-+||++.|...
T Consensus 155 ~~t~l~---~gelit~v~lP~~ 173 (284)
T COG1319 155 GETALE---PGELITAVILPPP 173 (284)
T ss_pred cccccC---CCcEEEEEEcCCC
Confidence 222221 2248999888553
No 44
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=88.31 E-value=0.84 Score=45.20 Aligned_cols=146 Identities=16% Similarity=0.212 Sum_probs=88.4
Q ss_pred cccccccCCCccccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccc--cccC--CCCEEEEEc----CCCceEEcCC
Q 020076 51 LKDLSTWGIGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCL--FDDL--GFDGCVILN----RIEFLERKET 122 (331)
Q Consensus 51 L~~~tt~~iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll--~~d~--~~~GvVI~~----~l~~i~~~~~ 122 (331)
+.+--++.+++-.+.++.|.+.+|+..++.. +-.-+++-|++.+- +... ... .||-. .+..|++ ..
T Consensus 191 ~~~~e~v~~~~~~~r~~~P~~l~D~a~l~aa----~P~AtivAGsTDvgLwVtk~mr~l~-~vi~v~~l~eL~~i~~-~~ 264 (493)
T COG4630 191 LRDTETVEVGSGDDRFIVPATLADFADLLAA----HPGATIVAGSTDVGLWVTKQMRDLN-PVIFVGHLAELRRIEV-ST 264 (493)
T ss_pred ccCCcEEEecCCCceeEeeccHHHHHHHHhh----CCCCEEEecCcchhhHHHHHHhhcC-CeEEecchhhhheeee-cC
Confidence 4445567788889999999999999998764 23466777777542 2211 122 23332 2455554 34
Q ss_pred eEEEEcCCCcHHHHHHHHHHcC--CC-cccCCCCcc----ccchHHHHhhhhccCccccce-----eeEEEEEeCCC-cE
Q 020076 123 GIYRVGSGFRFNSLGMQCCTEG--FT-GLEFAAGIP----GTVGGAVYMNAGANGQETAGV-----IDSVDIVTLGG-KL 189 (331)
Q Consensus 123 ~~v~v~AG~~l~~L~~~~~~~G--l~-GlE~l~gIP----gTVGGav~mNaGayG~ei~d~-----v~sv~vv~~~G-~v 189 (331)
+.++++||+++.+...++.++= |. -+.-+.+-+ ||+||.|. .|+.|.|. .+..+++...| ..
T Consensus 265 ~~l~iGAgvt~t~a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIa-----ngSPIGDtPPaLIALgA~ltLr~g~~~ 339 (493)
T COG4630 265 GGLEIGAGVTYTQAYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIA-----NGSPIGDTPPALIALGATLTLRSGDGR 339 (493)
T ss_pred CcEEEccCccHHHHHHHHHhhCchHHHHHHHhcchhhhcccccccccc-----CCCcCCCCCchhhhcCcEEEEEecCCc
Confidence 7899999999999988877541 10 011111221 56666553 24445553 33444554433 45
Q ss_pred EEEecCcccccccccccc
Q 020076 190 QRVSRNDLKFGYRSSSFQ 207 (331)
Q Consensus 190 ~~~~~~el~~~YR~s~f~ 207 (331)
++++-+|.+.+|+..--+
T Consensus 340 RtlPLe~~Fi~Y~kqdr~ 357 (493)
T COG4630 340 RTLPLEDYFIAYGKQDRQ 357 (493)
T ss_pred ccccHHHHHHHhhhhccC
Confidence 677888999999876543
No 45
>PLN00192 aldehyde oxidase
Probab=78.76 E-value=2.6 Score=48.58 Aligned_cols=100 Identities=14% Similarity=0.096 Sum_probs=63.2
Q ss_pred cEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCcccccc-cCCCCEEEEEc-C---CCceEEcCCeEEEEcCCCcHHHHHH
Q 020076 64 NYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGSNCLFD-DLGFDGCVILN-R---IEFLERKETGIYRVGSGFRFNSLGM 138 (331)
Q Consensus 64 ~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GSNll~~-d~~~~GvVI~~-~---l~~i~~~~~~~v~v~AG~~l~~L~~ 138 (331)
.-++.|.|.+|+.++++.....+-...++.|||.+.+- .......+|++ + |+.|+.+ ++.+++||++++.++.+
T Consensus 234 ~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k~~~~p~~lIdi~~I~EL~~I~~~-~~~l~IGA~vTl~el~~ 312 (1344)
T PLN00192 234 YRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKDEELYDKYIDIRHIPELSMIRRD-EKGIEIGAVVTISKAIE 312 (1344)
T ss_pred ceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeeeccCCCCeEEEcCCChhhhcEEec-CCEEEEeecCcHHHHHH
Confidence 35889999999998876421001236788889887542 21223567776 3 4555543 46799999999999987
Q ss_pred HHHHcCCC---------cccCCCCcc----ccchHHHHh
Q 020076 139 QCCTEGFT---------GLEFAAGIP----GTVGGAVYM 164 (331)
Q Consensus 139 ~~~~~Gl~---------GlE~l~gIP----gTVGGav~m 164 (331)
.+.+.-.. -+..+++-+ ||+||.|.+
T Consensus 313 ~l~~~~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~ 351 (1344)
T PLN00192 313 ALREESKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVM 351 (1344)
T ss_pred HHHhhccccchHHHHHHHHHHhcChhhccceechhhhcc
Confidence 75554211 122233332 799999864
No 46
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=71.95 E-value=4.3 Score=45.48 Aligned_cols=153 Identities=11% Similarity=0.110 Sum_probs=87.5
Q ss_pred CccccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCCc--ccccccCCCCEEEEEc-CCCce-EEc-CCeEEEEcCCCcHH
Q 020076 60 GGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKGS--NCLFDDLGFDGCVILN-RIEFL-ERK-ETGIYRVGSGFRFN 134 (331)
Q Consensus 60 GG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~GS--Nll~~d~~~~GvVI~~-~l~~i-~~~-~~~~v~v~AG~~l~ 134 (331)
+..-..+..|.|.+||.++.+ ......++.|-+ .+......++ -.|+. .+... .+. ++..+++||++++.
T Consensus 211 ~~~~~~W~~P~sl~eL~~~~~----~~~~~~Lv~GNT~~gv~~r~~~~~-~~Id~~~v~el~~~~~~~~gi~lGa~~sls 285 (1257)
T KOG0430|consen 211 GNDGIRWYWPVSLEELFELKA----NKPDAKLVAGNTAHGVYRRSPDYQ-KFIDVSGVPELKALNVDDNGLELGAALSLS 285 (1257)
T ss_pred CCCCcEEeCcccHHHHHHHHh----cCcceEEEeccccceEEeccCCCc-ceechhcCchhhhcccCCCceEEcccccHH
Confidence 334456788999999999887 222333433333 3332222233 23443 22211 122 23569999999999
Q ss_pred HHHHHHHHcC-CCc----------ccCCCCcc----ccchHHHHhhhhccCccccceeeEEEEEeCCCcEEEEec-----
Q 020076 135 SLGMQCCTEG-FTG----------LEFAAGIP----GTVGGAVYMNAGANGQETAGVIDSVDIVTLGGKLQRVSR----- 194 (331)
Q Consensus 135 ~L~~~~~~~G-l~G----------lE~l~gIP----gTVGGav~mNaGayG~ei~d~v~sv~vv~~~G~v~~~~~----- 194 (331)
+..+.+.+.- ..| +++.++.| ||+||.|.+-+...-. ++|...-+.+.++. +.-++.
T Consensus 286 ~~~~~l~~~~~~~~~~~~~~~~~hl~~~A~~~IRN~atigGnI~~~~~~~~f-~SDl~~~l~a~~a~--v~~~~~~~~~~ 362 (1257)
T KOG0430|consen 286 ETMELLRKLVKRPGFEYFKALWEHLKWFANVQIRNVGTIGGNICTKAQSPEF-PSDLFILLEALDAK--VTILNNSGDLE 362 (1257)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHhcccceeccccccceeEeccCCCCC-chhHHHHHHhhccE--EEEeecCCccc
Confidence 9887765442 445 78888888 8999999654443332 66665444333322 221221
Q ss_pred CccccccccccccCCCCceEEEEEEEEeE
Q 020076 195 NDLKFGYRSSSFQDMKDLAAIVAVTFQLQ 223 (331)
Q Consensus 195 ~el~~~YR~s~f~~~g~~gII~~a~lkL~ 223 (331)
+...-+||.+.+.. .-|++++.|...
T Consensus 363 ~~~l~~y~~~~l~~---~~illsv~ip~~ 388 (1257)
T KOG0430|consen 363 KVFLEEYLGSSLGA---KEILLSVVLPAS 388 (1257)
T ss_pred eeeHhhhhccccCc---ceEEEEEEccCc
Confidence 12356788876542 247888877544
No 47
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=61.33 E-value=13 Score=30.62 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=33.0
Q ss_pred cccCCCccccEEEEeCCHHHHHHHHHHHHHCCCceEEe
Q 020076 55 STWGIGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVI 92 (331)
Q Consensus 55 tt~~iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vl 92 (331)
-.|...|.+.+++++.|++|+.++.+.|++.++|..++
T Consensus 40 ~~W~~~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v 77 (113)
T PRK04322 40 EEWLNEGQKKVVLKVNSEEELLELKEKAERLGLPTALI 77 (113)
T ss_pred HHHHHCCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 45667889999999999999999999999999886554
No 48
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=60.13 E-value=15 Score=30.25 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=33.8
Q ss_pred ccccCCCccccEEEEeCCHHHHHHHHHHHHHCCCceEEe
Q 020076 54 LSTWGIGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVI 92 (331)
Q Consensus 54 ~tt~~iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vl 92 (331)
+..|...|.+.+++.+.+++|+.++.+.|++.++|..++
T Consensus 41 ~~~W~~~g~~KvVl~v~~~~~l~~l~~~a~~~gl~~~~v 79 (115)
T cd02407 41 LRAWELEGQKKVVLKVPSEEELLELAKKAKELGLPHSLI 79 (115)
T ss_pred HHHHHhCCCcEEEEECCCHHHHHHHHHHHHHcCCCeEEE
Confidence 446788899999999999999999999999988886543
No 49
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=53.01 E-value=21 Score=29.16 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=32.3
Q ss_pred ccccCCCccccEEEEeCCHHHHHHHHHHHHHCCCceEEe
Q 020076 54 LSTWGIGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVI 92 (331)
Q Consensus 54 ~tt~~iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vl 92 (331)
+..|...|.+.+++...|++++.++.+.|++.++|..++
T Consensus 42 ~~~W~~~g~~Kivlkv~~e~~L~~l~~~a~~~gl~~~~i 80 (116)
T PF01981_consen 42 LREWENNGQKKIVLKVPSEEELLELAKKAKEAGLPHYLI 80 (116)
T ss_dssp HHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-SEEEE
T ss_pred HHHHhcCCCceEEEEeCCHHHHHHHHHHHHHCCCCEEEE
Confidence 334556789999999999999999999999999997654
No 50
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=48.79 E-value=29 Score=28.71 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=31.3
Q ss_pred cCCCccccEEEEeCCHHHHHHHHHHHHHCCCceEEe
Q 020076 57 WGIGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVI 92 (331)
Q Consensus 57 ~~iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vl 92 (331)
|.-.|.+.+++...|++|+.++.+.|++.++|..++
T Consensus 44 W~~~G~~KVvlk~~~~~el~~l~~~a~~~~l~~~~v 79 (115)
T TIGR00283 44 WLDEGQKKVVLKVNSLEELLEIYHKAESLGLVTGLI 79 (115)
T ss_pred HHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCEEEE
Confidence 444778999999999999999999999999987655
No 51
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=44.40 E-value=23 Score=32.08 Aligned_cols=25 Identities=16% Similarity=0.522 Sum_probs=21.2
Q ss_pred HHHHHHHHHHCCCceEEeCCCcccc
Q 020076 75 LVSAIRYCHEHSVRYVVIGKGSNCL 99 (331)
Q Consensus 75 l~~iv~~a~~~~~pv~vlG~GSNll 99 (331)
+.+.++||+++++|+.|+.+|.+-.
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~f 102 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDPF 102 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchH
Confidence 3457789999999999999999853
No 52
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=42.68 E-value=41 Score=27.75 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=31.0
Q ss_pred cCCCccccEEEEeCCHHHHHHHHHHHHHCCCceEEe
Q 020076 57 WGIGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVI 92 (331)
Q Consensus 57 ~~iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vl 92 (331)
|.-.|.+.+++...+++|+.++.+.|++.++|..++
T Consensus 44 W~~~G~~KiVl~~~~~~el~~l~~~a~~~~l~~~~v 79 (115)
T cd02430 44 WEREGQKKIVLKVNSEEELLELKKKAKSLGLPTSLI 79 (115)
T ss_pred HHhcCCcEEEEecCCHHHHHHHHHHHHHcCCCeEEE
Confidence 444558999999999999999999999999987665
No 53
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.88 E-value=43 Score=30.07 Aligned_cols=37 Identities=14% Similarity=0.236 Sum_probs=32.2
Q ss_pred ccCCCccccEEEEeCCHHHHHHHHHHHHHCCCceEEe
Q 020076 56 TWGIGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVI 92 (331)
Q Consensus 56 t~~iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vl 92 (331)
.|.--|.|.+++..++++++.++.+.|+..+++..++
T Consensus 118 ~We~~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~i 154 (190)
T KOG3282|consen 118 RWENCGQAKIVVKAESEEELMELQKDAKKLGLYTHLI 154 (190)
T ss_pred HHHHcCCceEEEEcCCHHHHHHHHHHHHHcCCcEEEE
Confidence 3556789999999999999999999999999886654
No 54
>PHA00692 hypothetical protein
Probab=39.16 E-value=15 Score=26.73 Aligned_cols=23 Identities=43% Similarity=0.771 Sum_probs=17.9
Q ss_pred CCeeECCEEEeccCcceEEeCCCCCHHHHH
Q 020076 274 KGFRVGGAMVSNIHANFFVNTGGSTSRDML 303 (331)
Q Consensus 274 KG~~~Gga~vS~~HanfivN~g~Ata~dv~ 303 (331)
-|+|+||.+||. -.|.|+|-||+
T Consensus 39 pgfrfggcrvsk-------gmgaaraldvl 61 (74)
T PHA00692 39 PGFRFGGCRVSK-------GMGAARALDVL 61 (74)
T ss_pred CCccccceeecc-------cccHHHHHHHH
Confidence 368999999997 46777777765
No 55
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=35.80 E-value=79 Score=26.20 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=30.8
Q ss_pred CccccEEEEeCCHHHHHHHHHHHHHCCCceEEe
Q 020076 60 GGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVI 92 (331)
Q Consensus 60 GG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vl 92 (331)
.|...++++..|++|+.++-+.|++.++|..++
T Consensus 53 ~g~~KVVLkv~~e~eL~~L~~~a~~~gi~~~l~ 85 (116)
T cd02429 53 DNMHKVVLEVPDEAALKNLSSKLTENSIKHKLW 85 (116)
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHcCCCeEEE
Confidence 678999999999999999999999999998875
No 56
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=34.97 E-value=27 Score=33.58 Aligned_cols=50 Identities=28% Similarity=0.305 Sum_probs=41.6
Q ss_pred ccHHHHHHHhCCCCeeECCEEEeccCcceEEeCCCCCHHHHHHHHHHHHHHH
Q 020076 262 VAAAELIERAGLKGFRVGGAMVSNIHANFFVNTGGSTSRDMLNLIAFVKEKV 313 (331)
Q Consensus 262 ~~Ag~LIe~~GlKG~~~Gga~vS~~HanfivN~g~Ata~dv~~Li~~v~~~V 313 (331)
...++|++++|+|+.-.+|+.|+. +.=+-..|..|.+|++..++.|-+.|
T Consensus 28 ~~sA~la~~aGF~al~~sg~~vA~--slG~pD~~~~t~~e~~~~vrrI~~a~ 77 (289)
T COG2513 28 AGSALLAERAGFKALYLSGAGVAA--SLGLPDLGITTLDEVLADARRITDAV 77 (289)
T ss_pred HHHHHHHHHcCCeEEEeccHHHHH--hcCCCccccccHHHHHHHHHHHHhhc
Confidence 468899999999999999998887 44455678888999999998887654
No 57
>PF02244 Propep_M14: Carboxypeptidase activation peptide; InterPro: IPR003146 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The peptidases are synthesised as inactive molecules, zymogens, with propeptides that must be removed by proteolytic cleavage to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Members of this propeptide family are found in the metallocarboxypeptidases: A1, A2 [], A3, A4, A5, A6, U, insect gut carboxypeptidase and B [], and and are associated with peptidases belonging to MEROPS peptidase family M14A. Carboxypeptidases are found in abundance in pancreatic secretions. The pro-segment moiety (activation peptide) accounts for up to a quarter of the total length of the peptidase.; GO: 0004180 carboxypeptidase activity, 0006508 proteolysis; PDB: 3D68_C 3D67_B 3D66_A 1PBA_A 3GLJ_A 1NSA_A 1KWM_A 2BOA_B 1PYT_A 1JQG_A ....
Probab=34.92 E-value=53 Score=24.10 Aligned_cols=32 Identities=22% Similarity=0.500 Sum_probs=24.0
Q ss_pred CCCccccEEEEeCCHHHHHHHHHHHHHCCCceEEe
Q 020076 58 GIGGPCNYFVQVFDQSQLVSAIRYCHEHSVRYVVI 92 (331)
Q Consensus 58 ~iGG~a~~~v~P~s~eel~~iv~~a~~~~~pv~vl 92 (331)
.+|++++++|-|...+++.++++ ++++++.++
T Consensus 31 ~~~~~~dv~V~p~~~~~f~~~L~---~~~i~~~v~ 62 (74)
T PF02244_consen 31 SVGRPVDVMVPPEKLEEFEELLK---EHGIEYEVL 62 (74)
T ss_dssp STTSEEEEEEEGGGHHHHHHHHH---HTT-EEEEE
T ss_pred CCCCeEEEEECHHHHHHHHHHHH---HCCCcEEEE
Confidence 48899999999988887776655 567776653
No 58
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=34.80 E-value=64 Score=29.40 Aligned_cols=130 Identities=14% Similarity=0.130 Sum_probs=73.9
Q ss_pred CeeeeecceEEEeecCCCCcccccCCCCCCChhhhhhhhcccccccCCCcc-cccccCCCccccEEEE----e-CCHHHH
Q 020076 2 PFSITHNAHVLLQPVRNTSPLVCSHTNCFNKKEQTQNWNGLKFIRRNKLLK-DLSTWGIGGPCNYFVQ----V-FDQSQL 75 (331)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~tt~~iGG~a~~~v~----P-~s~eel 75 (331)
+..|+..|+-+|||| |--++.|.|.-..|.+.......+. .+.+. -|--+.-|+.+..+-. | .+.||.
T Consensus 63 ~~~i~~~aD~~~~~s-----llns~~~~~i~g~~~~~~~~~~~~~-~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~ 136 (205)
T TIGR01769 63 VNGLSRYADAVFFMS-----LLNSADTYFIVGAQILGAITILKLN-LEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIA 136 (205)
T ss_pred ccccCcCCCEEEEEE-----eecCCCcchhhhHHHHHHHHHHHcC-CcccceEEEEECCCCceeeecCcccCCCCCHHHH
Confidence 346777888888885 6677888898776665332111111 11111 2222333333333321 2 267888
Q ss_pred HHHHHHHHHCCCceEEeCCCcccccccCCCCEEEEEcC-CCceEEcCCeEEEEcCCCcHHHHHHHHHHcCC
Q 020076 76 VSAIRYCHEHSVRYVVIGKGSNCLFDDLGFDGCVILNR-IEFLERKETGIYRVGSGFRFNSLGMQCCTEGF 145 (331)
Q Consensus 76 ~~iv~~a~~~~~pv~vlG~GSNll~~d~~~~GvVI~~~-l~~i~~~~~~~v~v~AG~~l~~L~~~~~~~Gl 145 (331)
.+....|+.++++++-+=.+|+-. ..++.. ++.++-.-+..+.++.|++-.+-++.+.+.|-
T Consensus 137 ~~~a~aa~~~G~~~i~Le~~sGa~--------~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GA 199 (205)
T TIGR01769 137 AAYCLAAKYFGMKWVYLEAGSGAS--------YPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGA 199 (205)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCC--------CCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCC
Confidence 888888889999988874444320 001111 12221001346889999999888888877764
No 59
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=32.39 E-value=36 Score=25.42 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=30.9
Q ss_pred cHHHHHHHhCCCCeeECCEEEeccCcceEEeCCCCCHHHHHHHHH
Q 020076 263 AAAELIERAGLKGFRVGGAMVSNIHANFFVNTGGSTSRDMLNLIA 307 (331)
Q Consensus 263 ~Ag~LIe~~GlKG~~~Gga~vS~~HanfivN~g~Ata~dv~~Li~ 307 (331)
-.+.|.+.+|+.+-.||...|.+.|+-|=|... -++++++.++
T Consensus 18 iv~~i~~~~gi~~~~IG~I~I~~~~S~vev~~~--~a~~v~~~l~ 60 (74)
T PF03880_consen 18 IVGAICNEAGIPGRDIGRIDIFDNFSFVEVPEE--VAEKVLEALN 60 (74)
T ss_dssp HHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-TT---HHHHHHHHT
T ss_pred HHHHHHhccCCCHHhEEEEEEeeeEEEEEECHH--HHHHHHHHhc
Confidence 466777889999999999999999999988654 4577776655
No 60
>PF04517 Microvir_lysis: Microvirus lysis protein (E), C terminus; InterPro: IPR007605 E protein causes host cell lysis by inhibiting MraY, a peptidoglycan biosynthesis enzyme. This leads to cell wall failure at septation []. The N-terminal transmembrane region matches the signal peptide model and must be omitted from the family.; GO: 0004857 enzyme inhibitor activity, 0019054 modulation by virus of host cellular process
Probab=30.45 E-value=20 Score=24.12 Aligned_cols=16 Identities=38% Similarity=0.690 Sum_probs=13.7
Q ss_pred CCcccccCCCCCCChh
Q 020076 19 TSPLVCSHTNCFNKKE 34 (331)
Q Consensus 19 ~~~~~~~~~~~~~~~~ 34 (331)
-.||-||++||-..|+
T Consensus 23 LkPLn~S~~pcv~~p~ 38 (42)
T PF04517_consen 23 LKPLNCSRLPCVYAPE 38 (42)
T ss_pred cccCcCCCcceeeccc
Confidence 3589999999988876
No 61
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=28.72 E-value=70 Score=29.71 Aligned_cols=132 Identities=12% Similarity=0.051 Sum_probs=74.4
Q ss_pred CeeeeecceEEEeecCCCCcccccCCCCCCChhhhhhhhccccccc-CCCcccccccCCCccccE----EEEeCCHHHHH
Q 020076 2 PFSITHNAHVLLQPVRNTSPLVCSHTNCFNKKEQTQNWNGLKFIRR-NKLLKDLSTWGIGGPCNY----FVQVFDQSQLV 76 (331)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~~tt~~iGG~a~~----~v~P~s~eel~ 76 (331)
+..|+..|+-+|||| |--++.|.|.--.|.+-..-+..+.. -.| .-|--+.-|+.+.. .-.|.+.+|++
T Consensus 70 ~~~i~~~aDa~l~~s-----vlNs~~~~~iig~~~~~~~~~~~~~le~ip-~gYiv~~~~~~va~~~~~~~~~~~~~~~~ 143 (232)
T PRK04169 70 IEGISPGADAYLFPS-----VLNSRNPYWIIGAHVEAAPIIKKGGLEVIP-EGYIVLNPGSKVAVVGTAAPIPLDKPDIA 143 (232)
T ss_pred ccccCcCCCEEEEEE-----EecCCCcchHhhHHHHHHHHHhhcCcEECc-eEEEEECCCCeeeeeeccccCCCChHHHH
Confidence 346778888899985 67788899986555442221110000 011 01211222322222 23488999999
Q ss_pred HHHHHHHH-CCCceEEeCCCcccccccCCCCEEEEEcCCCceEEcCCe-EEEEcCCCcHHHHHHHHHHcCCC
Q 020076 77 SAIRYCHE-HSVRYVVIGKGSNCLFDDLGFDGCVILNRIEFLERKETG-IYRVGSGFRFNSLGMQCCTEGFT 146 (331)
Q Consensus 77 ~iv~~a~~-~~~pv~vlG~GSNll~~d~~~~GvVI~~~l~~i~~~~~~-~v~v~AG~~l~~L~~~~~~~Gl~ 146 (331)
.....|.+ .+.|+..+=.||.. .+ +.+--+| +.+.-.-+. .+.+|.|++..+-++.+.+.|-.
T Consensus 144 ~~~~lA~~~~g~~~vYle~gs~~--g~-~~~~e~I----~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD 208 (232)
T PRK04169 144 AYAALAAEYLGMPIVYLEYGGGA--GD-PVPPEMV----KAVKKALDITPLIYGGGIRSPEQARELMAAGAD 208 (232)
T ss_pred HHHHHHHHHcCCCeEEEECCCCC--CC-CCCHHHH----HHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCC
Confidence 99888855 46788777666532 11 1110011 111101123 68899999999998888877754
No 62
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=28.01 E-value=58 Score=31.69 Aligned_cols=94 Identities=24% Similarity=0.201 Sum_probs=53.6
Q ss_pred HHHHHHHHHCCCceEEeCCC-----cccccccCCCCEEEEEc--C---CCceEE--cCCeEEEEcCCCcHHHHHHHHHHc
Q 020076 76 VSAIRYCHEHSVRYVVIGKG-----SNCLFDDLGFDGCVILN--R---IEFLER--KETGIYRVGSGFRFNSLGMQCCTE 143 (331)
Q Consensus 76 ~~iv~~a~~~~~pv~vlG~G-----SNll~~d~~~~GvVI~~--~---l~~i~~--~~~~~v~v~AG~~l~~L~~~~~~~ 143 (331)
..++.+|.++++|+++=|=. .++.+....-.+++|+. . +..+.+ .+.+.+.+|+|++=.....+..-.
T Consensus 174 ~Sil~~Ay~~~VPVf~Pa~~DgsiG~~l~~~~~~~~~l~iD~~~D~~~l~~~~~~a~k~G~iilGGGvpKh~~~~~~~~~ 253 (312)
T PRK01221 174 NSILRAAYEKGVPVFVPGIVDGAFGTQLFTFSQRFGGFKINLLEDEELLSDLVFSSKKLGALIIGGGISKHHTIWWNQFK 253 (312)
T ss_pred CcHHHHHHHcCCCEECCCccHHHHHHHHHHHhhcCCCcceeHHHHHHHHHHHHhccCceEEEEECCCcchhHHHHHHhhc
Confidence 45899999999999996643 23333221112466664 1 222222 234788899999887776654433
Q ss_pred CCCcccCCCCcc------ccchHHHHhhhhccCc
Q 020076 144 GFTGLEFAAGIP------GTVGGAVYMNAGANGQ 171 (331)
Q Consensus 144 Gl~GlE~l~gIP------gTVGGav~mNaGayG~ 171 (331)
+ |+++..-|- |++-||.-.=|-++|.
T Consensus 254 ~--G~DyaVqItta~~~dGslSGA~~~EAvSWGK 285 (312)
T PRK01221 254 D--GLDYAVYITTAVEYDGSLSGARPREAISWGK 285 (312)
T ss_pred c--CCCEEEEEeCCCCCCCcccCCChhhhhccCC
Confidence 2 444444332 4555555555555554
No 63
>cd01824 Phospholipase_B_like Phospholipase-B_like. This subgroup of the SGNH-family of lipolytic enzymes may have both esterase and phospholipase-A/lysophospholipase activity. It's members may be involved in the conversion of phosphatidylcholine to fatty acids and glycerophosphocholine, perhaps in the context of dietary lipid uptake. Members may be membrane proteins. The tertiary fold of the SGNH-hydrolases is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; Its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases.
Probab=26.40 E-value=85 Score=29.89 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=33.4
Q ss_pred cCcceEEeC--CCCCHHHHHHHHHHHHHHHHHHhCCeeecceEEe
Q 020076 286 IHANFFVNT--GGSTSRDMLNLIAFVKEKVDQKFGVQLKEEVQYF 328 (331)
Q Consensus 286 ~HanfivN~--g~Ata~dv~~Li~~v~~~V~~~~gi~Le~Ev~~i 328 (331)
-|..-..|. .||+++|+..-++.+.+++++.-.++++...++|
T Consensus 79 ~~~~~~~N~av~Ga~s~dL~~qa~~lv~r~~~~~~i~~~~dwklV 123 (288)
T cd01824 79 TLPDSGFNVAEPGAKSEDLPQQARLLVRRMKKDPRVDFKNDWKLI 123 (288)
T ss_pred CCcccceeecccCcchhhHHHHHHHHHHHHhhccccccccCCcEE
Confidence 555566664 6899999999999888898888788888777443
No 64
>PF12812 PDZ_1: PDZ-like domain
Probab=25.70 E-value=32 Score=26.34 Aligned_cols=58 Identities=24% Similarity=0.275 Sum_probs=31.6
Q ss_pred CeeeeccC-CCCCCccHHHHHHHhCCCCeeECCEEEeccCc------ceEEeCCCCCHHHHHHHHHHHHH
Q 020076 249 TAGSVFRN-PSDKEVAAAELIERAGLKGFRVGGAMVSNIHA------NFFVNTGGSTSRDMLNLIAFVKE 311 (331)
Q Consensus 249 saGS~FkN-P~~~~~~Ag~LIe~~GlKG~~~Gga~vS~~Ha------nfivN~g~Ata~dv~~Li~~v~~ 311 (331)
-+|.+|++ |. ..|-++...+| |+-+..+.=|.+++ .||....+-.-.|+-++++.+++
T Consensus 10 ~~Ga~f~~Ls~---q~aR~~~~~~~--gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~Ld~f~~vvk~ 74 (78)
T PF12812_consen 10 VCGAVFHDLSY---QQARQYGIPVG--GVYVAVSGGSLAFAGGISKGFIITSVNGKPTPDLDDFIKVVKK 74 (78)
T ss_pred EcCeecccCCH---HHHHHhCCCCC--EEEEEecCCChhhhCCCCCCeEEEeECCcCCcCHHHHHHHHHh
Confidence 36888888 54 23444444444 55443333333333 24445555555777777777765
No 65
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=25.68 E-value=1e+02 Score=26.19 Aligned_cols=28 Identities=11% Similarity=0.033 Sum_probs=24.8
Q ss_pred EEEEeCCHHHHHHHHHHHHHCCCceEEe
Q 020076 65 YFVQVFDQSQLVSAIRYCHEHSVRYVVI 92 (331)
Q Consensus 65 ~~v~P~s~eel~~iv~~a~~~~~pv~vl 92 (331)
.++.|.+.+|+..++++|-+..-|+.++
T Consensus 126 ~v~~Ps~~~~~~~ll~~a~~~~~P~~ir 153 (156)
T cd07033 126 TVLRPADANETAAALEAALEYDGPVYIR 153 (156)
T ss_pred EEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 5788999999999999999888788775
No 66
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=24.76 E-value=93 Score=25.22 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=30.2
Q ss_pred cccEEEEeCCHHHHHHHHHHHHHCCCceEEeCCC
Q 020076 62 PCNYFVQVFDQSQLVSAIRYCHEHSVRYVVIGKG 95 (331)
Q Consensus 62 ~a~~~v~P~s~eel~~iv~~a~~~~~pv~vlG~G 95 (331)
|-.+++.+.+..|+.-++..|++.++|+-+.+.-
T Consensus 56 P~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d~ 89 (100)
T PF15608_consen 56 PWKVLVRDPDDPDLAHLLLLAEEKGVPVEVYPDL 89 (100)
T ss_pred CCEEEECCCCCccHHHHHHHHHHcCCcEEEeCCC
Confidence 5678899888899999999999999999988743
No 67
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=24.13 E-value=1.2e+02 Score=26.47 Aligned_cols=29 Identities=3% Similarity=-0.081 Sum_probs=25.1
Q ss_pred cEEEEeCCHHHHHHHHHHHHHCCCceEEe
Q 020076 64 NYFVQVFDQSQLVSAIRYCHEHSVRYVVI 92 (331)
Q Consensus 64 ~~~v~P~s~eel~~iv~~a~~~~~pv~vl 92 (331)
-.++.|.+.+|...+++++.+.+-|+.++
T Consensus 136 ~~V~~Psd~~e~~~~l~~~~~~~~P~~~~ 164 (167)
T cd07036 136 LKVVAPSTPYDAKGLLKAAIRDDDPVIFL 164 (167)
T ss_pred CEEEeeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 45788999999999999999888888765
No 68
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=24.09 E-value=82 Score=29.12 Aligned_cols=131 Identities=15% Similarity=0.186 Sum_probs=77.2
Q ss_pred CeeeeecceEEEeecCCCCcccccCCCCCCChhhhhhhhcccccccCCCcc-cccccCCCc----cccEEEEeCCHHHHH
Q 020076 2 PFSITHNAHVLLQPVRNTSPLVCSHTNCFNKKEQTQNWNGLKFIRRNKLLK-DLSTWGIGG----PCNYFVQVFDQSQLV 76 (331)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~tt~~iGG----~a~~~v~P~s~eel~ 76 (331)
|..++..|+-+|||| |--++.|.|.-..|.+...-+..+. .+.+. -|--+.-|+ ..+.--.|.+.+|++
T Consensus 65 ~~~i~~~aDa~l~~s-----vlNs~~~~~iig~~~~~~~~~~~~~-~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~a 138 (223)
T TIGR01768 65 PTNVSRDADALFFPS-----VLNSDDPYWIIGAQIEAAPKFKKIG-EEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDLA 138 (223)
T ss_pred ccccCcCCCEEEEEE-----eecCCCchHHHhHHHHHHHHHhhhc-ceecceEEEEECCCcceeecccccccCCCcHHHH
Confidence 456778888888885 6677888997776655332211111 11111 122222222 223334578999999
Q ss_pred HHHHHHHH-CCCceEEeCCCcccccccCCCCEEEEEcC-CCceE-EcCCeEEEEcCCCcHHHHHHHHHHcCCC
Q 020076 77 SAIRYCHE-HSVRYVVIGKGSNCLFDDLGFDGCVILNR-IEFLE-RKETGIYRVGSGFRFNSLGMQCCTEGFT 146 (331)
Q Consensus 77 ~iv~~a~~-~~~pv~vlG~GSNll~~d~~~~GvVI~~~-l~~i~-~~~~~~v~v~AG~~l~~L~~~~~~~Gl~ 146 (331)
.....|.+ .+.|++-+=.||.. . .- +... ++.++ ...+..+.+|.|++-.+-++.+.+.|-.
T Consensus 139 a~~~lA~~~~g~~~vYlE~gs~~---g----~~-v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD 203 (223)
T TIGR01768 139 AYAAMAEEMLGMPIIYLEAGSGA---P----EP-VPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGAD 203 (223)
T ss_pred HHHHHHHHHcCCcEEEEEecCCC---C----CC-cCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCC
Confidence 99999888 68898887555432 0 00 1111 11111 1113468889999999999988877754
No 69
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs. Phenylalanine-tRNA synthetase (PheRS) is known to be among the most complex enzymes of the aaRS family. Bacterial and mitochondrial PheRSs share a ferredoxin-fold anticodon binding (FDX-ACB) domain, which represents a canonical double split alpha+beta motif having no insertions. The FDX-ACB domain displays a typical RNA recognition fold (RRM) (see PDOC00030 from PROSITEDOC) formed by the four-stranded antiparallel beta sheet, with two helices packed against it [, , , , ].; GO: 0000049 tRNA binding, 0000287 magnesium ion binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0008033 tRNA processing; PDB: 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 3PCO_D 2RHS_D 2RHQ_B 2AKW_B 1B70_B ....
Probab=23.41 E-value=92 Score=24.24 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCee
Q 020076 295 GGSTSRDMLNLIAFVKEKVDQKFGVQL 321 (331)
Q Consensus 295 g~Ata~dv~~Li~~v~~~V~~~~gi~L 321 (331)
..=|-++|-++++.+.+.+.++||+.|
T Consensus 67 ~TLt~~ev~~~~~~i~~~l~~~~~~~l 93 (94)
T PF03147_consen 67 RTLTDEEVNEIHDKIIKALEKKLGAEL 93 (94)
T ss_dssp S---HHHHHHHHHHHHHHHHHTCT-BE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcEe
Confidence 445788999999999999999999987
No 70
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=23.30 E-value=45 Score=32.03 Aligned_cols=59 Identities=20% Similarity=0.238 Sum_probs=45.0
Q ss_pred eccCCCCCCccHHHHHHHhCCCCeeECCEEEeccCcceEEeCCCCCHHHHHHHHHHHHHHH
Q 020076 253 VFRNPSDKEVAAAELIERAGLKGFRVGGAMVSNIHANFFVNTGGSTSRDMLNLIAFVKEKV 313 (331)
Q Consensus 253 ~FkNP~~~~~~Ag~LIe~~GlKG~~~Gga~vS~~HanfivN~g~Ata~dv~~Li~~v~~~V 313 (331)
++.-|.......+++++++|+++.-..++.+|.-+. +=..|.-|.+|+++.++.|.+.+
T Consensus 16 ~~~~pg~~D~lSAri~e~aGf~ai~~ss~~va~slG--~pD~g~l~~~e~~~~~~~I~~~~ 74 (290)
T TIGR02321 16 LFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYA--VPDANILSMSTHLEMMRAIASTV 74 (290)
T ss_pred CEEeccccCHHHHHHHHHcCCCEEEECHHHHHHHCC--CCCcccCCHHHHHHHHHHHHhcc
Confidence 344554334568899999999999999998886554 34567789999999888887765
No 71
>PF08853 DUF1823: Domain of unknown function (DUF1823); InterPro: IPR014952 These proteins are functionally uncharacterised. ; PDB: 2L1N_A.
Probab=23.20 E-value=28 Score=28.84 Aligned_cols=15 Identities=40% Similarity=0.846 Sum_probs=6.9
Q ss_pred HHHHHhCCCCeeECC
Q 020076 266 ELIERAGLKGFRVGG 280 (331)
Q Consensus 266 ~LIe~~GlKG~~~Gg 280 (331)
-|=+++|+|||+||.
T Consensus 80 lLKe~LgFkGYki~e 94 (116)
T PF08853_consen 80 LLKEQLGFKGYKIGE 94 (116)
T ss_dssp HHHHTT------GGG
T ss_pred HHHHhcCCCceeecC
Confidence 466889999999986
No 72
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=23.18 E-value=1.9e+02 Score=23.55 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=36.1
Q ss_pred CCeeECCEEEeccCcceEEeCCCCCHHHHHHHHHHHHHHHH
Q 020076 274 KGFRVGGAMVSNIHANFFVNTGGSTSRDMLNLIAFVKEKVD 314 (331)
Q Consensus 274 KG~~~Gga~vS~~HanfivN~g~Ata~dv~~Li~~v~~~V~ 314 (331)
+|.+...+.+.++-.+.|+=-+=-|..||...++.|++.|+
T Consensus 50 ~~~~y~~v~~~ekeg~~i~~g~lPt~~eVe~Fl~~v~~di~ 90 (105)
T PF09702_consen 50 EGRRYIAVIVKEKEGNYIIVGYLPTDEEVEDFLDDVERDIY 90 (105)
T ss_pred cCccccceeeccCCCCEEecCCCCChHHHHHHHHHHHHHHH
Confidence 67777778889999999996666899999999999999885
No 73
>PRK06683 hypothetical protein; Provisional
Probab=22.83 E-value=1.3e+02 Score=23.25 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=28.1
Q ss_pred ccccEEEEeCCHHH--HHHHHHHHHHCCCceEEeC
Q 020076 61 GPCNYFVQVFDQSQ--LVSAIRYCHEHSVRYVVIG 93 (331)
Q Consensus 61 G~a~~~v~P~s~ee--l~~iv~~a~~~~~pv~vlG 93 (331)
|.+..++...|.++ ...+..+|+.+++|+....
T Consensus 26 gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~ 60 (82)
T PRK06683 26 GIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVE 60 (82)
T ss_pred CCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 68888888888766 5667889999999999887
No 74
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.67 E-value=80 Score=30.21 Aligned_cols=24 Identities=8% Similarity=0.290 Sum_probs=21.5
Q ss_pred eCCHHHHHHHHHHHHHCCCceEEe
Q 020076 69 VFDQSQLVSAIRYCHEHSVRYVVI 92 (331)
Q Consensus 69 P~s~eel~~iv~~a~~~~~pv~vl 92 (331)
+-|.+|+.+++++|+++++.+++.
T Consensus 56 ~yT~~ei~ei~~yA~~~gI~vIPe 79 (301)
T cd06565 56 AYTKEEIREIDDYAAELGIEVIPL 79 (301)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEec
Confidence 359999999999999999988874
No 75
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=22.57 E-value=1.3e+02 Score=26.14 Aligned_cols=33 Identities=9% Similarity=-0.065 Sum_probs=26.2
Q ss_pred cEEEEeCCHHHHHHHHHHHHH--CCCceEEeCCCc
Q 020076 64 NYFVQVFDQSQLVSAIRYCHE--HSVRYVVIGKGS 96 (331)
Q Consensus 64 ~~~v~P~s~eel~~iv~~a~~--~~~pv~vlG~GS 96 (331)
-.++.|.|.+|+..+++++-+ .+-|+.++-.-.
T Consensus 139 ~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r~ 173 (178)
T PF02779_consen 139 MKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPRG 173 (178)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEESS
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeHH
Confidence 457899999999999999999 567888875443
No 76
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=22.45 E-value=72 Score=25.76 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHHCCCceEEeCCCc
Q 020076 70 FDQSQLVSAIRYCHEHSVRYVVIGKGS 96 (331)
Q Consensus 70 ~s~eel~~iv~~a~~~~~pv~vlG~GS 96 (331)
-+..|..++++||+++++.+.|+|-=.
T Consensus 46 ~~~~d~~~l~~~a~~~~idlvvvGPE~ 72 (100)
T PF02844_consen 46 IDITDPEELADFAKENKIDLVVVGPEA 72 (100)
T ss_dssp S-TT-HHHHHHHHHHTTESEEEESSHH
T ss_pred CCCCCHHHHHHHHHHcCCCEEEECChH
Confidence 367788888999999999999998644
No 77
>PRK15109 antimicrobial peptide ABC transporter periplasmic binding protein SapA; Provisional
Probab=22.31 E-value=1.5e+02 Score=30.61 Aligned_cols=52 Identities=17% Similarity=0.326 Sum_probs=33.9
Q ss_pred cHHHHHHHhCCCCeeECCEEEeccCcceEEeCCCCC-HHHHHHHHHHHHHHHHHHhCCeeecce
Q 020076 263 AAAELIERAGLKGFRVGGAMVSNIHANFFVNTGGST-SRDMLNLIAFVKEKVDQKFGVQLKEEV 325 (331)
Q Consensus 263 ~Ag~LIe~~GlKG~~~Gga~vS~~HanfivN~g~At-a~dv~~Li~~v~~~V~~~~gi~Le~Ev 325 (331)
.|-+|++++|++|+.+ .++.+.|+.. .....++++.+++...+ .||+++.+.
T Consensus 363 kAk~lL~eAG~~~~~l----------~i~~~~~~~~~~~~~~~~a~~iq~~l~~-iGI~v~i~~ 415 (547)
T PRK15109 363 KSREQLKALGLENLTL----------KLWVPTASQAWNPSPLKTAELIQADLAQ-VGVKVVIVP 415 (547)
T ss_pred HHHHHHHHcCCCCceE----------EEEEecCCCCCCCCHHHHHHHHHHHHHH-cCCEEEEEE
Confidence 5899999999987432 3444444311 12245677777777765 799987764
No 78
>cd08512 PBP2_NikA_DppA_OppA_like_7 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most si
Probab=21.42 E-value=1.9e+02 Score=28.80 Aligned_cols=50 Identities=24% Similarity=0.473 Sum_probs=32.1
Q ss_pred ccHHHHHHHhCCC-CeeECCEEEeccCcceEEeCCCCCHHHHHHHHHHHHHHHHHHhCCeeecce
Q 020076 262 VAAAELIERAGLK-GFRVGGAMVSNIHANFFVNTGGSTSRDMLNLIAFVKEKVDQKFGVQLKEEV 325 (331)
Q Consensus 262 ~~Ag~LIe~~GlK-G~~~Gga~vS~~HanfivN~g~Ata~dv~~Li~~v~~~V~~~~gi~Le~Ev 325 (331)
..|-+|++++|++ |++ + .+++..+.. +-.++++.|++...+ .||+++.+.
T Consensus 319 ~~A~~lL~eaG~~~g~~-----l-----~l~~~~~~~---~~~~~a~~i~~~l~~-~Gi~v~~~~ 369 (476)
T cd08512 319 EKAKELLAEAGYPNGFK-----L-----TLSYNSGNE---PREDIAQLLQASLAQ-IGIKVEIEP 369 (476)
T ss_pred HHHHHHHHHcCCCCCcE-----E-----EEEeCCCCc---chHHHHHHHHHHHHH-hCCeEEEEE
Confidence 3588999999997 532 2 234444432 345667777777644 899887654
No 79
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=21.33 E-value=4e+02 Score=28.43 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=31.6
Q ss_pred cccEEEEeCCHHHHHHHHHHHHHCC-CceEEe---CCCcccccc
Q 020076 62 PCNYFVQVFDQSQLVSAIRYCHEHS-VRYVVI---GKGSNCLFD 101 (331)
Q Consensus 62 ~a~~~v~P~s~eel~~iv~~a~~~~-~pv~vl---G~GSNll~~ 101 (331)
|--.+..|++++|+.+++.++..++ -|+.++ |.|......
T Consensus 441 Pnmvi~aP~de~el~~ml~ta~~~~~gP~AiRyPrg~~~~~~~~ 484 (627)
T COG1154 441 PNMVIMAPRDEEELRQMLYTALAQDDGPVAIRYPRGNGVGVILT 484 (627)
T ss_pred CCcEEecCCCHHHHHHHHHHHHhcCCCCeEEEecCCCCCCCCcc
Confidence 3445678999999999999999998 598775 777765443
No 80
>PF11548 Receptor_IA-2: Protein-tyrosine phosphatase receptor IA-2; InterPro: IPR021613 IA-2 is a protein-tyrosine phosphatase receptor that upon exocytosis, the cytoplasmic domain is cleaved and moves to the nucleus where it enhances transcription of the insulin gene. The mature exodomain of IA-2 participates in adhesion to the extracellular matrix and is self-proteolyzed in vitro by reactive oxygen species which may be a new shedding mechanism. ; PDB: 2QT7_B 3N01_B 3N4W_B 3NG8_A.
Probab=21.28 E-value=1.2e+02 Score=24.16 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=22.6
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHHHhCCee
Q 020076 293 NTGGSTSRDMLNLIAFVKEKVDQKFGVQL 321 (331)
Q Consensus 293 N~g~Ata~dv~~Li~~v~~~V~~~~gi~L 321 (331)
|.-+=|++||.+.+...|+.+.+++|+..
T Consensus 54 N~~n~taadVa~~a~~~K~~Le~~tG~~I 82 (91)
T PF11548_consen 54 NNKNLTAADVAKQAVDNKNQLEKETGLKI 82 (91)
T ss_dssp -TT---HHHHHHHHHHTHHHHHHHHSS-E
T ss_pred CcCCCCHHHHHHHHHHhHHHHHHhhCcEE
Confidence 67778999999999999999999999874
No 81
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=21.09 E-value=2.1e+02 Score=24.28 Aligned_cols=71 Identities=7% Similarity=-0.094 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHCCCceEEeCCCcccccccCCCCEEEEEc--C----CCceE-------EcCCeEEEEcCCCcHHHHHHH
Q 020076 73 SQLVSAIRYCHEHSVRYVVIGKGSNCLFDDLGFDGCVILN--R----IEFLE-------RKETGIYRVGSGFRFNSLGMQ 139 (331)
Q Consensus 73 eel~~iv~~a~~~~~pv~vlG~GSNll~~d~~~~GvVI~~--~----l~~i~-------~~~~~~v~v~AG~~l~~L~~~ 139 (331)
+++.+.++.+.+++.++..++.|+-+|...+-.+|.-... . +.... +.++..++.+++....++..+
T Consensus 83 ~~l~~~l~~~~~~~~~i~~ic~G~~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a~~d~~l~ 162 (179)
T TIGR01383 83 KLLLNILKKQESKGKLVAAICAAPAVLLAAGVLLGKKATCYPGFKEKLLNGNYSVNEAVVVDGNIITSRGPGTAIEFALA 162 (179)
T ss_pred HHHHHHHHHHHHCCCEEEEEChhHHHHHhcCCCCCCcEEECccHHHhccCCceeCCCCEEEeCCEEECCChhhHHHHHHH
Confidence 5678888888889999999999998876553333321111 1 11111 123357788888878888877
Q ss_pred HHHc
Q 020076 140 CCTE 143 (331)
Q Consensus 140 ~~~~ 143 (331)
+.++
T Consensus 163 li~~ 166 (179)
T TIGR01383 163 LVEL 166 (179)
T ss_pred HHHH
Confidence 7665
No 82
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=21.04 E-value=90 Score=24.66 Aligned_cols=22 Identities=27% Similarity=0.677 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhCCeeecceEEec
Q 020076 306 IAFVKEKVDQKFGVQLKEEVQYFH 329 (331)
Q Consensus 306 i~~v~~~V~~~~gi~Le~Ev~~i~ 329 (331)
|..|.+++.+.|.| +.|.|+|.
T Consensus 26 I~~v~~~~rklf~i--~~E~RLW~ 47 (88)
T PF14836_consen 26 IGFVEKEMRKLFNI--QEETRLWN 47 (88)
T ss_dssp HHHHHHHHHHHCT---TS-EEEEE
T ss_pred HHHHHHHHHHHhCC--Cccceehh
Confidence 66789999999999 99999985
No 83
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=20.78 E-value=1.1e+02 Score=30.37 Aligned_cols=28 Identities=18% Similarity=0.405 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHCCCceEE-eCCCccc
Q 020076 71 DQSQLVSAIRYCHEHSVRYVV-IGKGSNC 98 (331)
Q Consensus 71 s~eel~~iv~~a~~~~~pv~v-lG~GSNl 98 (331)
+.+++.++++.+++++..++| +||||-+
T Consensus 73 ~~~~v~~~~~~~~~~~~D~IiaiGGGS~i 101 (383)
T PRK09860 73 TTENVAAGLKLLKENNCDSVISLGGGSPH 101 (383)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHH
Confidence 678899999999999998888 9999965
No 84
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=20.75 E-value=62 Score=29.50 Aligned_cols=87 Identities=20% Similarity=0.264 Sum_probs=49.7
Q ss_pred cEEEEeC-----CHHHHHHHHHHHHHCCCceEE---eCCCcccccccCCCCEEEEEcCCCceEEcCCeEEEEcCCCcHHH
Q 020076 64 NYFVQVF-----DQSQLVSAIRYCHEHSVRYVV---IGKGSNCLFDDLGFDGCVILNRIEFLERKETGIYRVGSGFRFNS 135 (331)
Q Consensus 64 ~~~v~P~-----s~eel~~iv~~a~~~~~pv~v---lG~GSNll~~d~~~~GvVI~~~l~~i~~~~~~~v~v~AG~~l~~ 135 (331)
++.+.+. +++++.+++..++... +++ .|||+|+|+.-. .-+..+ -.|.+..+
T Consensus 88 ~v~vvmaDLPLl~~~~i~~~~~~~~d~d--vviaP~~gGGTn~L~~r~----~~~~~~--------------y~g~SF~~ 147 (210)
T COG1920 88 EVIVVMADLPLLSPEHIERALSAAKDAD--VVIAPGRGGGTNVLFARK----SAFRPR--------------YGGVSFLR 147 (210)
T ss_pred ceEEEecccccCCHHHHHHHHHhcCCCc--EEEecCCCCceEEEEEec----cccccc--------------ccCccHHH
Confidence 3555554 5789999998876643 444 589999765431 111111 12445566
Q ss_pred HHHHHHHcCCC-------cccCCCCccccchHHHHhhhhccC
Q 020076 136 LGMQCCTEGFT-------GLEFAAGIPGTVGGAVYMNAGANG 170 (331)
Q Consensus 136 L~~~~~~~Gl~-------GlE~l~gIPgTVGGav~mNaGayG 170 (331)
=++.+.+.|+. ++..=..-|.-++-+...+.|.+-
T Consensus 148 Hl~~Ark~G~~~~~~dSf~l~~DVDtpeDL~e~~~hG~g~~~ 189 (210)
T COG1920 148 HLEEARKRGLVVLTYDSFGLSADVDTPEDLVEAFIHGVGPAT 189 (210)
T ss_pred HHHHHHHcCCEEEEecccceecCCCCHHHHHHHHHhCCcHHH
Confidence 66677777764 232222335557776666666544
No 85
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=20.59 E-value=1.4e+02 Score=24.83 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=29.0
Q ss_pred ccccEEEEeCCHH--HH-HHHHHHHHHCCCceEEeCCC
Q 020076 61 GPCNYFVQVFDQS--QL-VSAIRYCHEHSVRYVVIGKG 95 (331)
Q Consensus 61 G~a~~~v~P~s~e--el-~~iv~~a~~~~~pv~vlG~G 95 (331)
|.+.+++.+.|.+ ++ ..+..+|+++++|+...+.-
T Consensus 45 gkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk 82 (122)
T PRK04175 45 GIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSK 82 (122)
T ss_pred CCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCH
Confidence 5799999999884 44 68899999999999888743
No 86
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=20.58 E-value=59 Score=26.92 Aligned_cols=48 Identities=23% Similarity=0.344 Sum_probs=30.8
Q ss_pred CeeECCEEE--eccCcceEEeCCCCCHHHHHHHHHHHHHHHHHHhCCeeecc
Q 020076 275 GFRVGGAMV--SNIHANFFVNTGGSTSRDMLNLIAFVKEKVDQKFGVQLKEE 324 (331)
Q Consensus 275 G~~~Gga~v--S~~HanfivN~g~Ata~dv~~Li~~v~~~V~~~~gi~Le~E 324 (331)
||+..|+.. ..++.||++.....+.+|+.+.++.+- ..+.+||-|-.|
T Consensus 19 GF~LaGi~~~~~~~~~nf~~v~~~t~~eei~~~~~~~l--~~~digIIlIte 68 (115)
T TIGR01101 19 GFLLGGIGEINKNRHPNFLVVDKNTTVSEIEDCFNRFL--KRDDIAIILINQ 68 (115)
T ss_pred HHHHhCCCccccccccceeeecCCCCHHHHHHHHHHHh--hcCCeEEEEEcH
Confidence 455555433 567899999888888888776665522 245566655443
No 87
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=20.42 E-value=1.5e+02 Score=28.63 Aligned_cols=26 Identities=12% Similarity=0.308 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHHHCCCceEE-eCCCc
Q 020076 71 DQSQLVSAIRYCHEHSVRYVV-IGKGS 96 (331)
Q Consensus 71 s~eel~~iv~~a~~~~~pv~v-lG~GS 96 (331)
+.+.+.++++.+++.+..++| +||||
T Consensus 63 ~~~~v~~~~~~~~~~~~d~iIaiGGGs 89 (339)
T cd08173 63 TYEEVEKVESSARDIGADFVIGVGGGR 89 (339)
T ss_pred CHHHHHHHHHHhhhcCCCEEEEeCCch
Confidence 556666666666655544443 56655
No 88
>PRK03971 putative deoxyhypusine synthase; Provisional
Probab=20.39 E-value=79 Score=31.07 Aligned_cols=97 Identities=16% Similarity=0.092 Sum_probs=55.2
Q ss_pred HHHHHHHHHCCCceEEeCCC-----ccccccc--CCCCEEEEEc--C---CCceEEc--CCeEEEEcCCCcHHHHHHHHH
Q 020076 76 VSAIRYCHEHSVRYVVIGKG-----SNCLFDD--LGFDGCVILN--R---IEFLERK--ETGIYRVGSGFRFNSLGMQCC 141 (331)
Q Consensus 76 ~~iv~~a~~~~~pv~vlG~G-----SNll~~d--~~~~GvVI~~--~---l~~i~~~--~~~~v~v~AG~~l~~L~~~~~ 141 (331)
.-++.||.++++|+++=|=. .++.+.. ....+++++. . ++.+... +.+.+.+|+|++=.....+..
T Consensus 194 ~Sil~~Ayk~~VPIf~Pa~tDgsiG~~l~~~~~~~~~~~l~~D~~~D~~~l~~i~~~s~k~G~iilGGGvpKh~~~~~~l 273 (334)
T PRK03971 194 KSILYWAYKNNIPIFCPAITDGSIGDMLYFFKKEGKDSELGIDIANDIVKLNDLAITAKETACIVLGGSLPKHSIINANL 273 (334)
T ss_pred chHHHHHHHcCCCEEcCCcchhhHHHHHHHHHhhcCCCceEEeHHHHHHHHHHHHhccCceEEEEECCchHHHHHHHHhc
Confidence 46899999999999996633 2333222 1223466663 1 2232222 347888899988877666533
Q ss_pred HcCCCcccCCCCcc------ccchHHHHhhhhccCccccc
Q 020076 142 TEGFTGLEFAAGIP------GTVGGAVYMNAGANGQETAG 175 (331)
Q Consensus 142 ~~Gl~GlE~l~gIP------gTVGGav~mNaGayG~ei~d 175 (331)
-.+ |+++..-|- |+.-||.-.=|=.+|. +..
T Consensus 274 ~~~--G~dYaVqItta~~~dGslSGA~p~EAvSWGK-i~~ 310 (334)
T PRK03971 274 FRG--GTDYAIYITTAMPWDGSLSGAPPEEGVSWGK-IKA 310 (334)
T ss_pred ccC--CCCEEEEEeCCCCCCCcccCCChhhhhccCC-ccC
Confidence 332 444444442 5555655555555664 443
No 89
>PRK15138 aldehyde reductase; Provisional
Probab=20.37 E-value=1e+02 Score=30.53 Aligned_cols=28 Identities=21% Similarity=0.506 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHCCCceEE-eCCCccc
Q 020076 71 DQSQLVSAIRYCHEHSVRYVV-IGKGSNC 98 (331)
Q Consensus 71 s~eel~~iv~~a~~~~~pv~v-lG~GSNl 98 (331)
+.+++.++++.+++.+..++| +||||-+
T Consensus 70 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 98 (387)
T PRK15138 70 TYETLMKAVKLVREEKITFLLAVGGGSVL 98 (387)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCChHHH
Confidence 678999999999999988887 9999865
Done!