BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020079
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FTW|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Dictyostelium Discoideum
Length = 521
Score = 263 bits (673), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 137/262 (52%), Positives = 173/262 (66%), Gaps = 4/262 (1%)
Query: 49 IQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
+ + ILIK GTVVN +DV VE+GI+ + NI + +KV+DAT K ++PGGI
Sbjct: 4 VDQTGTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLPGGI 63
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA--K 165
D HTH + FMG+ ++DDF G AA+AGGTT IDFVIP G SL ++ ++K A K
Sbjct: 64 DTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEK 123
Query: 166 NSCMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCK 225
+C DY H+AIT W G+NSF FMAYK SFM+ D+ + FKRCK
Sbjct: 124 VNC-DYSLHVAITWWSEQVSREMEILVKERGVNSFXCFMAYKNSFMVTDQEMYHIFKRCK 182
Query: 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285
LGA+A VHAENGD VFEGQK+M+E+GITGPEGH LSRP LE EAT RAI +A+ V TP
Sbjct: 183 ELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSVCTP 242
Query: 286 LYVVHVMSMDAMEEIAKARKAG 307
+Y+VHV S+ A + I K RK G
Sbjct: 243 VYIVHVQSIGAADVICKHRKEG 264
>pdb|2VR2|A Chain A, Human Dihydropyrimidinase
Length = 541
Score = 261 bits (666), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 136/265 (51%), Positives = 167/265 (63%), Gaps = 6/265 (2%)
Query: 49 IQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQ----PNINVGDDVKVLDATGKFVM 104
+ + S++LI+GG VVN ++ADV VEDG+V A+ P ++VLDA GK V+
Sbjct: 23 MAAPSRLLIRGGRVVNDDFSEVADVLVEDGVVRALGHDLLPPGGAPAGLRVLDAAGKLVL 82
Query: 105 PGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKK 163
PGGID HTH+ FMGS +IDDF G AAL+GGTTM IDF IP G SL FE +
Sbjct: 83 PGGIDTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIIDFAIPQKGGSLIEAFETWRSW 142
Query: 164 AK-NSCMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFK 222
A C DY H+A+T W G+NSFK FMAYK +M+ D L E F
Sbjct: 143 ADPKVCCDYSLHVAVTWWSDQVKEEMKILVQDKGVNSFKMFMAYKDLYMVTDLELYEAFS 202
Query: 223 RCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV 282
RCK +GA+A VHAENGD + EG K+M+ LGITGPEGH L RP +E EAT RAI +A V
Sbjct: 203 RCKEIGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAV 262
Query: 283 NTPLYVVHVMSMDAMEEIAKARKAG 307
N PLY+VHVMS A + IA AR+ G
Sbjct: 263 NCPLYIVHVMSKSAAKVIADARRDG 287
>pdb|3DC8|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
pdb|3DC8|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
Length = 490
Score = 237 bits (605), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 158/253 (62%), Gaps = 4/253 (1%)
Query: 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115
+IKGGT+V A ADV VE G +V + PN++ + LDATG +VMPGGIDPHTHL
Sbjct: 4 VIKGGTIVTADLTYKADVKVEGGRIVEIGPNLS---GAETLDATGCYVMPGGIDPHTHLE 60
Query: 116 MEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFH 174
M FMG+ + DDF SG AALAGGTTM +DF +P G SL ++ K+ + DY FH
Sbjct: 61 MPFMGTYSSDDFESGTRAALAGGTTMVVDFALPSPGQSLLEALTMWDNKSTRANCDYSFH 120
Query: 175 MAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH 234
MAIT W GIN+F FMAYKG+ M++D+ + F+RC +LGAL +VH
Sbjct: 121 MAITWWGEQVFNEMETIVKDKGINTFXHFMAYKGALMVDDDEMFSSFQRCAALGALPLVH 180
Query: 235 AENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM 294
AENGD V + Q +++ G +GPE HA SRP +EGEA RAI +A+ P+Y+VH
Sbjct: 181 AENGDVVAQLQAKLLAEGNSGPEAHAYSRPAEVEGEAANRAIMIADMAGCPVYIVHTSCE 240
Query: 295 DAMEEIAKARKAG 307
A E I +AR G
Sbjct: 241 QAHEAIRRARAKG 253
>pdb|1KCX|A Chain A, X-Ray Structure Of Nysgrc Target T-45
pdb|1KCX|B Chain B, X-Ray Structure Of Nysgrc Target T-45
Length = 518
Score = 234 bits (597), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 122/260 (46%), Positives = 162/260 (62%), Gaps = 2/260 (0%)
Query: 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+S ++LI+GG ++N ADVY+EDG++ + N+ V VK ++A G+ V+PGGID
Sbjct: 6 TSDRLLIRGGRIINDDQSFYADVYLEDGLIKQIGENLIVPGGVKTIEANGRMVIPGGIDV 65
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS-LTAGFEAYEKKAK-NSC 168
+T+L G + DDFF G AALAGGTTM ID V+P GS L FE + + A SC
Sbjct: 66 NTYLQKPSQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGSSLLTSFEKWHEAADTKSC 125
Query: 169 MDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228
DY H+ IT W G+NSF+ +MAYK + ++D L E F K LG
Sbjct: 126 CDYSLHVDITSWYDGVREELEVLVQDKGVNSFQVYMAYKDLYQMSDSQLYEAFTFLKGLG 185
Query: 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288
A+ +VHAENGD + + QKR++E+GITGPEGHALSRP LE EA RAI +A +N P+Y+
Sbjct: 186 AVILVHAENGDLIAQEQKRILEMGITGPEGHALSRPEELEAEAVFRAIAIAGRINCPVYI 245
Query: 289 VHVMSMDAMEEIAKARKAGP 308
VMS A + IA ARK GP
Sbjct: 246 TKVMSKSAADIIALARKKGP 265
>pdb|2GSE|A Chain A, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|B Chain B, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|C Chain C, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|D Chain D, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2VM8|A Chain A, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|B Chain B, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|C Chain C, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|D Chain D, Human Crmp-2 Crystallised In The Presence Of Mg
Length = 501
Score = 226 bits (575), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 117/259 (45%), Positives = 158/259 (61%), Gaps = 2/259 (0%)
Query: 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+S ++LIKGG +VN AD+Y+EDG++ + N+ V VK ++A + V+PGGID
Sbjct: 24 TSDRLLIKGGKIVNDDQSFYADIYMEDGLIKQIGENLIVPGGVKTIEAHSRMVIPGGIDV 83
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SC 168
HT M G + DDFF G AALAGGTTM ID V+P G SL A F+ + + A + SC
Sbjct: 84 HTRFQMPDQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGTSLLAAFDQWREWADSKSC 143
Query: 169 MDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228
DY H+ I++W G+NSF +MA+K F + D + E + +G
Sbjct: 144 CDYSLHVDISEWHKGIQEEMEALVKDHGVNSFLVYMAFKDRFQLTDCQIYEVLSVIRDIG 203
Query: 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288
A+A VHAENGD + E Q+R+++LGITGPEGH LSRP +E EA RAI +A N PLY+
Sbjct: 204 AIAQVHAENGDIIAEEQQRILDLGITGPEGHVLSRPEEVEAEAVNRAITIANQTNCPLYI 263
Query: 289 VHVMSMDAMEEIAKARKAG 307
VMS + E IA+ARK G
Sbjct: 264 TKVMSKSSAEVIAQARKKG 282
>pdb|4B91|A Chain A, Crystal Structure Of Truncated Human Crmp-5
pdb|4B91|B Chain B, Crystal Structure Of Truncated Human Crmp-5
pdb|4B92|A Chain A, Crystal Structure Of Truncated Human Crmp-5 Soaked With Zn
pdb|4B92|B Chain B, Crystal Structure Of Truncated Human Crmp-5 Soaked With Zn
Length = 484
Score = 215 bits (547), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 119/268 (44%), Positives = 154/268 (57%), Gaps = 6/268 (2%)
Query: 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+S +ILIKGG VVN ADVY+E+GI+ V + + KV+DATGK V+PGGID
Sbjct: 7 ASVRILIKGGKVVNDDCTHEADVYIENGIIQQVGRELMIPGGAKVIDATGKLVIPGGIDT 66
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEK----KAKN 166
TH FM + +DDF+ G AAL GGTTM I V+P T+ +AYEK
Sbjct: 67 STHFHQTFMNATCVDDFYHGTKAALVGGTTMIIGHVLP--DKETSLVDAYEKCRGLADPK 124
Query: 167 SCMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226
C DY H+ IT W G+NSF+ FM YK +M+ D L + CK
Sbjct: 125 VCCDYALHVGITWWAPKVKAEMETLVREKGVNSFQMFMTYKDLYMLRDSELYQVLHACKD 184
Query: 227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286
+GA+A VHAENG+ V EG K ++LGITGPEG +SRP LE EAT R I +A + P+
Sbjct: 185 IGAIARVHAENGELVAEGAKEALDLGITGPEGIEISRPEELEAEATHRVITIANRTHCPI 244
Query: 287 YVVHVMSMDAMEEIAKARKAGPNFLNTT 314
Y+V+V S+ A + IA A+ G L T
Sbjct: 245 YLVNVSSISAGDVIAAAKMQGKVVLAET 272
>pdb|4B90|A Chain A, Crystal Structure Of Wt Human Crmp-5
pdb|4B90|B Chain B, Crystal Structure Of Wt Human Crmp-5
Length = 586
Score = 214 bits (545), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 119/268 (44%), Positives = 154/268 (57%), Gaps = 6/268 (2%)
Query: 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+S +ILIKGG VVN ADVY+E+GI+ V + + KV+DATGK V+PGGID
Sbjct: 28 ASVRILIKGGKVVNDDCTHEADVYIENGIIQQVGRELMIPGGAKVIDATGKLVIPGGIDT 87
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEK----KAKN 166
TH FM + +DDF+ G AAL GGTTM I V+P T+ +AYEK
Sbjct: 88 STHFHQTFMNATCVDDFYHGTKAALVGGTTMIIGHVLP--DKETSLVDAYEKCRGLADPK 145
Query: 167 SCMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226
C DY H+ IT W G+NSF+ FM YK +M+ D L + CK
Sbjct: 146 VCCDYALHVGITWWAPKVKAEMETLVREKGVNSFQMFMTYKDLYMLRDSELYQVLHACKD 205
Query: 227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286
+GA+A VHAENG+ V EG K ++LGITGPEG +SRP LE EAT R I +A + P+
Sbjct: 206 IGAIARVHAENGELVAEGAKEALDLGITGPEGIEISRPEELEAEATHRVITIANRTHCPI 265
Query: 287 YVVHVMSMDAMEEIAKARKAGPNFLNTT 314
Y+V+V S+ A + IA A+ G L T
Sbjct: 266 YLVNVSSISAGDVIAAAKMQGKVVLAET 293
>pdb|1YNY|A Chain A, Molecular Structure Of D-Hydantoinase From A Bacillus Sp.
Ar9: Evidence For Mercury Inhibition
pdb|1YNY|B Chain B, Molecular Structure Of D-Hydantoinase From A Bacillus Sp.
Ar9: Evidence For Mercury Inhibition
Length = 461
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/265 (44%), Positives = 151/265 (56%), Gaps = 3/265 (1%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
K I+GGTVV A ADV +E VVA+ ++V + + +DATG +V+PGGIDPHTH
Sbjct: 2 KKWIRGGTVVTAADTYQADVLIEGERVVAIGHQLSV-NGAEEIDATGCYVIPGGIDPHTH 60
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDY 171
L M F G+ T DDFF+G AA GGTT +DF + G SL + + +KA+ + +DY
Sbjct: 61 LDMPFGGTVTADDFFTGTRAAAFGGTTSIVDFCLTKKGESLKSAIATWHEKARGKAVIDY 120
Query: 172 GFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALA 231
GFH+ I + GI S K FMAYK F +DE L + + K LGAL
Sbjct: 121 GFHLMIAEANDQVLEELESVISSEGITSLKVFMAYKNVFQADDETLFKTLVKAKELGALV 180
Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
VHAENGD + K+ + G T P HA +RPP EGEAT RAI L + LYVVHV
Sbjct: 181 QVHAENGDVLDYLTKKALAEGNTDPIYHAYTRPPEAEGEATGRAIALTALAGSQLYVVHV 240
Query: 292 MSMDAMEEIAKARKAGPNFLNTTIP 316
A++ IA+AR+ G N T P
Sbjct: 241 SCASAVQRIAEAREKGWNVYGETCP 265
>pdb|3SFW|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Brevibacillus Agri Nchu1002
pdb|3SFW|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Brevibacillus Agri Nchu1002
Length = 461
Score = 197 bits (502), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 114/265 (43%), Positives = 149/265 (56%), Gaps = 3/265 (1%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
K I+ GTVV A ADV ++ VVA+ ++ D +V+DATG +++PGGIDPHTH
Sbjct: 2 KKWIRNGTVVTASDTYQADVLIDGEKVVAIGSDLQ-ATDAEVIDATGYYLLPGGIDPHTH 60
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDY 171
L M F G+ T D+FF+G AA GGTT +DF + G SL + + +KA+ + +DY
Sbjct: 61 LDMPFGGTVTSDNFFTGTKAAAFGGTTSIVDFCLTSKGESLHSAIATWHEKARGKAVIDY 120
Query: 172 GFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALA 231
GFH+ ++ GI S FMAYK M +DE L + R K LGAL
Sbjct: 121 GFHLMVSDANDHVLEELESVVNNEGITSLXVFMAYKNVLMADDETLFKTLIRAKELGALV 180
Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
VHAENGD + K+ + G T P HA +RPP EGEAT RAI L + LYVVHV
Sbjct: 181 QVHAENGDVLDYLTKQALAEGNTDPIYHAYTRPPEAEGEATGRAIALTALADAQLYVVHV 240
Query: 292 MSMDAMEEIAKARKAGPNFLNTTIP 316
DA+ IA+AR+ G N T P
Sbjct: 241 SCADAVRRIAEAREKGWNVYGETCP 265
>pdb|1K1D|A Chain A, Crystal Structure Of D-Hydantoinase
pdb|1K1D|B Chain B, Crystal Structure Of D-Hydantoinase
pdb|1K1D|C Chain C, Crystal Structure Of D-Hydantoinase
pdb|1K1D|D Chain D, Crystal Structure Of D-Hydantoinase
pdb|1K1D|E Chain E, Crystal Structure Of D-Hydantoinase
pdb|1K1D|F Chain F, Crystal Structure Of D-Hydantoinase
pdb|1K1D|G Chain G, Crystal Structure Of D-Hydantoinase
pdb|1K1D|H Chain H, Crystal Structure Of D-Hydantoinase
Length = 460
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 112/263 (42%), Positives = 142/263 (53%), Gaps = 3/263 (1%)
Query: 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115
+IK GT+V A A + ++DG + + N+ +V+DA G +V PGGIDPHTHL
Sbjct: 4 IIKNGTIVTATDTYEAHLLIKDGKIAMIGQNLE-EKGAEVIDAKGCYVFPGGIDPHTHLD 62
Query: 116 MEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS-LTAGFEAYEKKAK-NSCMDYGF 173
M G+ T DDF SG AA GGTT IDF + G L E + KA + +DYGF
Sbjct: 63 MPLGGTVTKDDFESGTIAAAFGGTTTIIDFCLTNKGEPLKKAIETWHNKANGKAVIDYGF 122
Query: 174 HMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV 233
H+ I++ GI S FMAYK F +D L K LGAL MV
Sbjct: 123 HLMISEITDDVLEELPKVLEEEGITSLXVFMAYKNVFQADDGTLYCTLLAAKELGALVMV 182
Query: 234 HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS 293
HAENGD + K+ + G T P HAL+RPP LEGEAT RA +L E + LYVVHV
Sbjct: 183 HAENGDVIDYLTKKALADGNTDPIYHALTRPPELEGEATGRACQLTELAGSQLYVVHVTC 242
Query: 294 MDAMEEIAKARKAGPNFLNTTIP 316
A+E+IA+AR G + T P
Sbjct: 243 AQAVEKIAEARNKGLDVWGETCP 265
>pdb|1NFG|A Chain A, Structure Of D-Hydantoinase
pdb|1NFG|B Chain B, Structure Of D-Hydantoinase
pdb|1NFG|C Chain C, Structure Of D-Hydantoinase
pdb|1NFG|D Chain D, Structure Of D-Hydantoinase
Length = 457
Score = 157 bits (397), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 100/262 (38%), Positives = 142/262 (54%), Gaps = 5/262 (1%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
I+IK GT+V A AD+ ++DG + Q +G + +DA G++V PGGID HTH+
Sbjct: 3 IIIKNGTIVTADGISRADLGIKDGKIT--QIGGALGPAERTIDAAGRYVFPGGIDVHTHV 60
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYG 172
+++ D F + AA GGTT +DF G SL ++ A S +DYG
Sbjct: 61 ETVSFNTQSADTFATATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAGGKSAIDYG 120
Query: 173 FHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
+H+ + GI SF FMAY+G MI+D L++ + G+L M
Sbjct: 121 YHIIVLD-PTDSVIEELEVLPDLGITSFXVFMAYRGMNMIDDVTLLKTLDKAVKTGSLVM 179
Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
VHAENGDA + + + G T P HALSRPP +E EAT RA+ LAE VN P+Y+VHV
Sbjct: 180 VHAENGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAEATARALALAEIVNAPIYIVHVT 239
Query: 293 SMDAMEEIAKARKAGPNFLNTT 314
+++EE+ +A+ G L T
Sbjct: 240 CEESLEEVMRAKSRGVRALAET 261
>pdb|1GKP|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|E Chain E, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|F Chain F, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKQ|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
Length = 458
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 138/265 (52%), Gaps = 4/265 (1%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LIK G ++ A + AD+Y E + + N+ +V+DATGK+V PG IDPH H+
Sbjct: 2 LLIKNGEIITADSRYKADIYAEGETITRIGQNLEAPPGTEVIDATGKYVFPGFIDPHVHI 61
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEAYEKKAK-NSCMDYG 172
+ FM + D +G AAL GGTT +I+ P N G++ ++ KA+ NS DY
Sbjct: 62 YLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNSYCDYT 121
Query: 173 FHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
FHMA++K+ GI+SF F++YK F ++D + + + K LG +
Sbjct: 122 FHMAVSKF-DEKTEGQLREIVADGISSFXIFLSYKNFFGVDDGEMYQTLRLAKELGVIVT 180
Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
H EN + V Q++++ G TGPE H SRP +E E T R E YVVH+
Sbjct: 181 AHCENAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHLS 240
Query: 293 SMDAMEEIAKARKAG-PNFLNTTIP 316
A++ A+ G P ++ + IP
Sbjct: 241 CKPALDAAMAAKARGVPIYIESVIP 265
>pdb|2FTY|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FVK|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVM|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
Length = 559
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 129/278 (46%), Gaps = 18/278 (6%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++IK G + A A++ V +G V + +I+ +V+DA G F+ PGGID H H+
Sbjct: 5 LIIKNGIICTASDIYAAEIAVNNGKVQLIAASIDPSLGSEVIDAEGAFITPGGIDAHVHV 64
Query: 115 --AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVI-------PINGSLTAGFEAYEKKAK 165
++ +G + +D +A+AGGTT + F P + + + E +
Sbjct: 65 DEPLKLLG-DVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQ 123
Query: 166 NSCMDYGFHMAI-------TKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLI 218
DYG H+ + + G++S FM Y G I+D ++
Sbjct: 124 TLYCDYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGVSSVXMFMTYPG-LQISDYDIM 182
Query: 219 EGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRL 278
+ G M+HAENGD V + + E G+T H +SRP ++EGEAT RAI L
Sbjct: 183 SAMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLTDAYYHGVSRPSIVEGEATNRAITL 242
Query: 279 AEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIP 316
A ++TP+ VHV S A E I +A+ G T P
Sbjct: 243 ATTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCP 280
>pdb|3HM7|A Chain A, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|B Chain B, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|C Chain C, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|D Chain D, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|E Chain E, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|F Chain F, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
Length = 448
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 119/255 (46%), Gaps = 17/255 (6%)
Query: 71 ADVYVEDGIVVAV-QPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129
ADV + +GIV A+ +P DD +D TG + PG +D H H G + F S
Sbjct: 24 ADVAIRNGIVSAITEPGSISSDDGPAIDGTGLHLFPGMVDVHVHFNEP--GRTEWEGFAS 81
Query: 130 GQAAALAGGTTMHIDFVIPINGSL-TAGFEAYEKKAK----NSCMDYGFHMAITKWXXXX 184
G + AGG T + D +P+N + T E +KK + S +DY F +
Sbjct: 82 GSKSLAAGGVTTYFD--MPLNSNPPTITREELDKKRQLANEKSLVDYRFWGGLVP----G 135
Query: 185 XXXXXXXXXXXGINSFKFFMAYKGS--FMIN-DELLIEGFKRCKSLGALAMVHAENGDAV 241
G+ FK FM+ G+ F + DE L++G K+ +LG++ VHAE+ + V
Sbjct: 136 NIDHLQDLHDGGVIGFKAFMSECGTDDFQFSHDETLLKGMKKIAALGSILAVHAESNEMV 195
Query: 242 FEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIA 301
IE + ++ +RP + E EA R +R A+ P+++ HV S ++ I
Sbjct: 196 NALTTIAIEEQRLTVKDYSEARPIVSELEAVERILRFAQLTCCPIHICHVSSRKVLKRIK 255
Query: 302 KARKAGPNFLNTTIP 316
+A+ G N T P
Sbjct: 256 QAKGEGVNVSVETCP 270
>pdb|3E74|A Chain A, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|B Chain B, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|C Chain C, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|D Chain D, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
Length = 473
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 125/288 (43%), Gaps = 40/288 (13%)
Query: 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
S ++IK GTV+ + ++ D+ V+ G + A+ ++ GD +V DA+G V PG +D H
Sbjct: 22 SFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDL--GDAKEVXDASGLVVSPGXVDAH 79
Query: 112 THLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPIN--------GSLTAGFEAYEKK 163
TH++ G + + +G AA GG T I+ P+N S+ F+A + K
Sbjct: 80 THISEP--GRSHWEGYETGTRAAAKGGITTXIE--XPLNQLPATVDRASIELKFDAAKGK 135
Query: 164 AKNSCMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMI-------NDEL 216
G ++ G+ F F+A G I ND
Sbjct: 136 LTIDAAQLGGLVSYN-------IDRLHELDEVGVVGFXCFVATCGDRGIDNDFRDVNDWQ 188
Query: 217 LIEGFKRCKSLGALAMVHAENG---DAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273
+G ++ LG +VH EN D + E KR G + SRP E EA
Sbjct: 189 FFKGAQKLGELGQPVLVHCENALICDELGEEAKRE---GRVTAHDYVASRPVFTEVEAIR 245
Query: 274 RAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSC 321
R + LA+ L+V HV S + +EE+ +AR+ G + C+SC
Sbjct: 246 RVLYLAKVAGCRLHVCHVSSPEGVEEVTRARQEGQDI------TCESC 287
>pdb|1GKR|A Chain A, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|B Chain B, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|C Chain C, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|D Chain D, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
Length = 458
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 122/271 (45%), Gaps = 14/271 (5%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+++K +V++ AD+ V+DG V A+ + + + + +DA GKFVMPG +D H H+
Sbjct: 4 VIVKNCRLVSSDGITEADILVKDGKVAAISADTSDVEASRTIDAGGKFVMPGVVDEHVHI 63
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFH 174
+ + ++AA+ G TT+ +PI T +A+ +K K +
Sbjct: 64 IDMDLKNRYGRFELDSESAAVGGITTI---IEMPITFPPTTTLDAFLEKKKQAGQRLKVD 120
Query: 175 MAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFM---INDELLIEGFKRCKSLGALA 231
A+ G F MA M ++D L E F+ + G++
Sbjct: 121 FALYGGGVPGNLPEIRKMHDAGAVGFXSMMAASVPGMFDAVSDGELFEIFQEIAACGSVI 180
Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
+VHAEN + QK++ G + S+P E EA RA+ L + L V+HV
Sbjct: 181 VVHAENETIIQALQKQIKAAGGKDMAAYEASQPVFQENEAIQRALLLQKEAGCRLIVLHV 240
Query: 292 MSMDAMEEIAKAR--------KAGPNFLNTT 314
+ D +E I +A+ ++GP +LN T
Sbjct: 241 SNPDGVELIHQAQSEGQDVHCESGPQYLNIT 271
>pdb|3GRI|A Chain A, The Crystal Structure Of A Dihydroorotase From
Staphylococcus Aureus
pdb|3GRI|B Chain B, The Crystal Structure Of A Dihydroorotase From
Staphylococcus Aureus
Length = 424
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 105/267 (39%), Gaps = 37/267 (13%)
Query: 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115
LIK G V+ Q AD+ ++ ++ + P I + V ++DA G FV PG +D H HL
Sbjct: 3 LIKNGKVLQNGELQQADILIDGKVIKQIAPAIEPSNGVDIIDAKGHFVSPGFVDVHVHLR 62
Query: 116 MEFMGSETIDDFFSGQAAALAGG--TTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGF 173
G E + +G AA GG T P+ S+ FEA +K +D
Sbjct: 63 EP--GGEYKETIETGTKAAARGGFTTVCPXPNTRPVPDSVEH-FEALQK-----LIDDNA 114
Query: 174 HMAITKWXXXXXXXXXXXXXXXGINSFKF-FMAYKGSFMINDE--------LLIEGFKRC 224
+ + + G F + +G+F D+ EG
Sbjct: 115 QVRVLPY-------ASITTRQLGKELVDFPALVKEGAFAFTDDGVGVQTASXXYEGXIEA 167
Query: 225 KSLGALAMVHAENGDAVFEGQ----KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAE 280
+ + H E+ ++ G KR ELGI G P + E R + LAE
Sbjct: 168 AKVNKAIVAHCEDNSLIYGGAXHEGKRSKELGIPG-------IPNICESVQIARDVLLAE 220
Query: 281 FVNTPLYVVHVMSMDAMEEIAKARKAG 307
+V HV + +++ I A++AG
Sbjct: 221 AAGCHYHVCHVSTKESVRVIRDAKRAG 247
>pdb|3MPG|A Chain A, Dihydroorotase From Bacillus Anthracis
pdb|3MPG|B Chain B, Dihydroorotase From Bacillus Anthracis
Length = 428
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 108/283 (38%), Gaps = 39/283 (13%)
Query: 56 LIKGGTVVNAHHQQIA-DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
L K G +N + +A D+ V+DG + V NI D+ +V+D GK + PG +D H HL
Sbjct: 4 LFKNGRYMNEEGKIVATDLLVQDGKIAKVAENI-TADNAEVIDVNGKLIAPGLVDVHVHL 62
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYE-------KKAKNS 167
G E + +G AA GG T +P + E E +KA +
Sbjct: 63 REP--GGEHKETIETGTLAAAKGGFTTIC--AMPNTRPVPDCREHMEDLQNRIKEKAHVN 118
Query: 168 CMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227
+ YG AIT G F G + + +++ KR L
Sbjct: 119 VLPYG---AITVRQAGSEMTDFETLKELG----AFAFTDDGVGVQDASMMLAAMKRAAKL 171
Query: 228 GALAMVHAE-----NGDAVFEGQKRMIELGITGPEGHALSR-PPLLEGEATTRAIRLAEF 281
+ H E N V EG+ E H L+ P + E R I LAE
Sbjct: 172 NMAVVAHCEENTLINKGCVHEGKFS---------EKHGLNGIPSVCESVHIARDILLAEA 222
Query: 282 VNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIP----LCDS 320
+ +V HV + ++ I A++AG P LC+
Sbjct: 223 ADCHYHVCHVSTKGSVRVIRDAKRAGIKVTAEVTPHHLVLCED 265
>pdb|2Z00|A Chain A, Crystal Structure Of Dihydroorotase From Thermus
Thermophilus
Length = 426
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 7/87 (8%)
Query: 55 ILIKGGTVVNAHHQQ-IADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
ILI+ +V+A ++ ADV + +G +++++ G+ +V+D TG F+ PG +D H H
Sbjct: 2 ILIRNVRLVDARGERGPADVLIGEGRILSLE----GGEAKQVVDGTGCFLAPGFLDLHAH 57
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTT 140
L G E +D FSG AA+ GG T
Sbjct: 58 LREP--GEEVKEDLFSGLLAAVRGGYT 82
>pdb|1XRF|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
pdb|1XRT|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
pdb|1XRT|B Chain B, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
Length = 467
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 54 KILIKGGTVVNAHHQQIA--DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
K+++K G V++ D+ VE+G + + NI V + +++DA G V PG ID H
Sbjct: 48 KLIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNILV-PEAEIIDAKGLIVCPGFIDIH 106
Query: 112 THLAMEFMGSETIDDFFSGQAAALAGGTT 140
HL G +D SG A+AGG T
Sbjct: 107 VHLRDP--GQTYKEDIESGSRCAVAGGFT 133
>pdb|3D6N|A Chain A, Crystal Structure Of Aquifex Dihydroorotase Activated By
Aspartate Transcarbamoylase
Length = 422
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 54 KILIKGGTVVNAHHQQIA--DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
K+++K G V++ D+ VE+G + + NI V + +++DA G V PG ID H
Sbjct: 3 KLIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNILV-PEAEIIDAKGLIVCPGFIDIH 61
Query: 112 THLAMEFMGSETIDDFFSGQAAALAGGTT 140
HL G +D SG A+AGG T
Sbjct: 62 VHLRDP--GQTYKEDIESGSRCAVAGGFT 88
>pdb|3OOQ|A Chain A, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|B Chain B, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|C Chain C, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|D Chain D, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|E Chain E, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|F Chain F, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|G Chain G, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|H Chain H, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|I Chain I, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|J Chain J, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
Length = 396
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 52 SSKILIKGGTVVNAHHQQI-ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
S KIL K TV + DV V +G V V NI D +++D TGKF+ PG +D
Sbjct: 4 SVKILFKNATVFPITSRPFKGDVLVSNGKVEKVGENIE-DPDAEIVDLTGKFLFPGFVDA 62
Query: 111 HTHLAM 116
H+H+ +
Sbjct: 63 HSHIGL 68
>pdb|1UBP|C Chain C, Crystal Structure Of Urease From Bacillus Pasteurii
Inhibited With Beta-Mercaptoethanol At 1.65 Angstroms
Resolution
pdb|2UBP|C Chain C, Structure Of Native Urease From Bacillus Pasteurii
pdb|3UBP|C Chain C, Diamidophosphate Inhibited Bacillus Pasteurii Urease
pdb|4UBP|C Chain C, Structure Of Bacillus Pasteurii Urease Inhibited With
Acetohydroxamic Acid At 1.55 A Resolution
pdb|1S3T|C Chain C, Borate Inhibited Bacillus Pasteurii Urease Crystal
Structure
pdb|4AC7|C Chain C, The Crystal Structure Of Sporosarcina Pasteurii Urease In
Complex With Citrate
Length = 570
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 16/82 (19%)
Query: 71 ADVYVEDGIVVA------------VQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF 118
AD+ V+DG +V V PN+ VG +V+ A GK V GGID H H F
Sbjct: 85 ADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTAGGIDTHVH----F 140
Query: 119 MGSETIDDFFSGQAAALAGGTT 140
+ + +D + L GG T
Sbjct: 141 INPDQVDVALANGITTLFGGGT 162
>pdb|1IE7|C Chain C, Phosphate Inhibited Bacillus Pasteurii Urease Crystal
Structure
Length = 570
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 16/82 (19%)
Query: 71 ADVYVEDGIVVA------------VQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF 118
AD+ V+DG +V V PN+ VG +V+ A GK V GGID H H F
Sbjct: 85 ADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTAGGIDTHVH----F 140
Query: 119 MGSETIDDFFSGQAAALAGGTT 140
+ + +D + L GG T
Sbjct: 141 INPDQVDVALANGITTLFGGGT 162
>pdb|3NQB|A Chain A, Crystal Structure Of Adenine Deaminase From Agrobacterium
Tumefaciens (Str. C 58)
pdb|3NQB|B Chain B, Crystal Structure Of Adenine Deaminase From Agrobacterium
Tumefaciens (Str. C 58)
pdb|3T81|A Chain A, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T81|B Chain B, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T8L|A Chain A, Crystal Structure Of Adenine Deaminase With MnFE
pdb|3T8L|B Chain B, Crystal Structure Of Adenine Deaminase With MnFE
Length = 608
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
+LI GGT+V+ ++ AD+ + ++ +V + D +V+DA G +V PG ID H
Sbjct: 37 VLITGGTLVDVVTGELRPADIGIVGALIASVHEPASRRDAAQVIDAGGAYVSPGLIDTHX 96
Query: 113 HL 114
H+
Sbjct: 97 HI 98
>pdb|1YBQ|B Chain B, Crystal Structure Of Escherichia Coli Isoaspartyl
Dipeptidase Mutant D285n Complexed With
Beta-Aspartylhistidine
Length = 390
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI--NVGDDVKVLDATGKFVMPGGIDPHTH 113
L++G + + I DV V +G ++AV NI ++ + V+D +G+ + PG ID H H
Sbjct: 11 LLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPGFIDQHVH 70
Query: 114 L 114
L
Sbjct: 71 L 71
>pdb|2AQV|A Chain A, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant Y137f
pdb|2AQV|B Chain B, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant Y137f
Length = 390
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI--NVGDDVKVLDATGKFVMPGGIDPHTH 113
L++G + + I DV V +G ++AV NI ++ + V+D +G+ + PG ID H H
Sbjct: 11 LLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPGFIDQHVH 70
Query: 114 L 114
L
Sbjct: 71 L 71
>pdb|1YBQ|A Chain A, Crystal Structure Of Escherichia Coli Isoaspartyl
Dipeptidase Mutant D285n Complexed With
Beta-Aspartylhistidine
Length = 390
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI--NVGDDVKVLDATGKFVMPGGIDPHTH 113
L++G + + I DV V +G ++AV NI ++ + V+D +G+ + PG ID H H
Sbjct: 11 LLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPGFIDQHVH 70
Query: 114 L 114
L
Sbjct: 71 L 71
>pdb|1ONW|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase From E. Coli
pdb|1ONW|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase From E. Coli
pdb|1ONX|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase From
Escherichia Coli Complexed With Aspartate
pdb|1ONX|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase From
Escherichia Coli Complexed With Aspartate
pdb|1PO9|A Chain A, Crytsal Structure Of Isoaspartyl Dipeptidase
pdb|1PO9|B Chain B, Crytsal Structure Of Isoaspartyl Dipeptidase
pdb|1POJ|A Chain A, Isoaspartyl Dipeptidase With Bound Inhibitor
pdb|1POJ|B Chain B, Isoaspartyl Dipeptidase With Bound Inhibitor
pdb|1POK|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase
pdb|1POK|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase
Length = 390
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI--NVGDDVKVLDATGKFVMPGGIDPHTH 113
L++G + + I DV V +G ++AV NI ++ + V+D +G+ + PG ID H H
Sbjct: 11 LLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPGFIDQHVH 70
Query: 114 L 114
L
Sbjct: 71 L 71
>pdb|2AQO|A Chain A, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant E77q
pdb|2AQO|B Chain B, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant E77q
Length = 390
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI--NVGDDVKVLDATGKFVMPGGIDPHTH 113
L++G + + I DV V +G ++AV NI ++ + V+D +G+ + PG ID H H
Sbjct: 11 LLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPGFIDQHVH 70
Query: 114 L 114
L
Sbjct: 71 L 71
>pdb|2BB0|A Chain A, Structure Of Imidazolonepropionase From Bacillus Subtilis
pdb|2BB0|B Chain B, Structure Of Imidazolonepropionase From Bacillus Subtilis
pdb|2G3F|A Chain A, Crystal Structure Of Imidazolonepropionase Complexed With
Imidazole-4- Acetic Acid Sodium Salt, A Substrate
Homologue
pdb|2G3F|B Chain B, Crystal Structure Of Imidazolonepropionase Complexed With
Imidazole-4- Acetic Acid Sodium Salt, A Substrate
Homologue
Length = 421
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
Query: 41 EYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDV-KVLDAT 99
E GP+ G +S + + VV H Q+I V A Q G + +++D +
Sbjct: 19 ESSGPRAG-KSMQDLHVIEDAVVGIHEQKI---------VFAGQKGAEAGYEADEIIDCS 68
Query: 100 GKFVMPGGIDPHTHL 114
G+ V PG +DPHTHL
Sbjct: 69 GRLVTPGLVDPHTHL 83
>pdb|3MKV|A Chain A, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|B Chain B, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|C Chain C, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|D Chain D, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|E Chain E, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|F Chain F, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|G Chain G, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|H Chain H, Crystal Structure Of Amidohydrolase Eaj56179
Length = 426
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 51 SSSKILIKGGTVVNAHHQQIA---DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGG 107
S + L + G +++ H + ++ +EDG + V + V+D GK +MPG
Sbjct: 2 SLTTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPGL 61
Query: 108 IDPHTH-LAMEF 118
ID H H +A+EF
Sbjct: 62 IDLHVHVVAIEF 73
>pdb|2VUN|A Chain A, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|B Chain B, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|C Chain C, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|D Chain D, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
Length = 386
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 53 SKILIKG-GTVVNAHHQ----QIADVYVEDGIVVAVQPNINVGD--DVKVLDATGKFVMP 105
SK +IK G +V+ + Q + VEDG++ A+ + D D ++DA G V P
Sbjct: 2 SKTIIKNIGKIVSGDIKSPVLQADTIVVEDGLIAAIGGEELMKDAGDATIIDAAGSTVTP 61
Query: 106 GGIDPHTHLA-MEFMGSETIDDFFSGQAAALAGGTTMHI 143
G +D H H++ ++ + DF S +AL GG T I
Sbjct: 62 GLLDTHVHVSGGDYAPRQKTMDFIS---SALHGGVTTMI 97
>pdb|3HPA|A Chain A, Crystal Structure Of An Amidohydrolase Gi:44264246 From An
Evironmental Sample Of Sargasso Sea
pdb|3HPA|B Chain B, Crystal Structure Of An Amidohydrolase Gi:44264246 From An
Evironmental Sample Of Sargasso Sea
Length = 479
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 30 ESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVV---NAHHQQIAD--VYVEDGIVVAVQ 84
E NL AG+ P +L+K V+ + +++ D +Y+ED +VAV
Sbjct: 8 ERMNLEQHAGAR--APNTSSSRPKTLLVKHADVLVTMDDTRRELRDAGLYIEDNRIVAVG 65
Query: 85 PNINVGDDV-KVLDATGKFVMPGGIDPHTHL 114
P+ + + +VLD G V+PG ++ H H+
Sbjct: 66 PSAELPETADEVLDLRGHLVIPGLVNTHHHM 96
>pdb|1V4Y|A Chain A, The Functional Role Of The Binuclear Metal Center In D-
Aminoacylase. One-Metal Activation And Second-Metal
Attenuation
Length = 496
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 56 LIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
++ GGTV++ + ++ADV V + AV +++ + +D GK V PG ID HTH
Sbjct: 24 ILSGGTVIDGTNAPGRLADVGVRGDRIAAVG-DLSASSARRRIDVAGKVVSPGFIDSHTH 82
>pdb|1RJQ|A Chain A, The Crystal Structure Of The D-Aminoacylase Mutant D366a
pdb|1RJR|A Chain A, The Crystal Structure Of The D-Aminoacylase D366a Mutant
In Complex With 100mm Zncl2
pdb|1RK5|A Chain A, The D-Aminoacylase Mutant D366a In Complex With 100mm
Cucl2
Length = 496
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 56 LIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
++ GGTV++ + ++ADV V + AV +++ + +D GK V PG ID HTH
Sbjct: 24 ILSGGTVIDGTNAPGRLADVGVRGDRIAAVG-DLSASSARRRIDVAGKVVSPGFIDSHTH 82
>pdb|1RJP|A Chain A, Crystal Structure Of D-Aminoacylase In Complex With 100mm
Cucl2
pdb|1RK6|A Chain A, The Enzyme In Complex With 50mm Cdcl2
pdb|1V51|A Chain A, The Functional Role Of The Binuclear Metal Center In D-
Aminoacylase. One-Metal Activation And Second-Metal
Attenuation
Length = 496
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 56 LIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
++ GGTV++ + ++ADV V + AV +++ + +D GK V PG ID HTH
Sbjct: 24 ILSGGTVIDGTNAPGRLADVGVRGDRIAAVG-DLSASSARRRIDVAGKVVSPGFIDSHTH 82
>pdb|1M7J|A Chain A, Crystal Structure Of D-Aminoacylase Defines A Novel Subset
Of Amidohydrolases
Length = 484
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 56 LIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
++ GGTV++ + ++ADV V + AV +++ + +D GK V PG ID HTH
Sbjct: 12 ILSGGTVIDGTNAPGRLADVGVRGDRIAAVG-DLSASSARRRIDVAGKVVSPGFIDSHTH 70
>pdb|1EJR|C Chain C, Crystal Structure Of The D221a Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 71 ADVYVEDGIVVAV--------QPNINV--GDDVKVLDATGKFVMPGGIDPHTH 113
AD+ V+DG + A+ QPN+ + G +V+ A GK V GGID H H
Sbjct: 84 ADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1KRB|C Chain C, Crystal Structure Of Klebsiella Aerogenes Urease, Its
Apoenzyme And Two Active Site Mutants
Length = 567
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 71 ADVYVEDGIVVAV--------QPNINV--GDDVKVLDATGKFVMPGGIDPHTH 113
AD+ V+DG + A+ QPN+ + G +V+ A GK V GGID H H
Sbjct: 84 ADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1KRC|C Chain C, Crystal Structure Of Klebsiella Aerogenes Urease, Its
Apoenzyme And Two Active Site Mutants
Length = 567
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 71 ADVYVEDGIVVAV--------QPNINV--GDDVKVLDATGKFVMPGGIDPHTH 113
AD+ V+DG + A+ QPN+ + G +V+ A GK V GGID H H
Sbjct: 84 ADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1EJT|C Chain C, Crystal Structure Of The H219q Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 71 ADVYVEDGIVVAV--------QPNINV--GDDVKVLDATGKFVMPGGIDPHTH 113
AD+ V+DG + A+ QPN+ + G +V+ A GK V GGID H H
Sbjct: 84 ADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1EJU|C Chain C, Crystal Structure Of The H320n Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 71 ADVYVEDGIVVAV--------QPNINV--GDDVKVLDATGKFVMPGGIDPHTH 113
AD+ V+DG + A+ QPN+ + G +V+ A GK V GGID H H
Sbjct: 84 ADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1FWG|C Chain C, Klebsiella Aerogenes Urease, C319s Variant
Length = 567
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 71 ADVYVEDGIVVAV--------QPNINV--GDDVKVLDATGKFVMPGGIDPHTH 113
AD+ V+DG + A+ QPN+ + G +V+ A GK V GGID H H
Sbjct: 84 ADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1EJV|C Chain C, Crystal Structure Of The H320q Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 71 ADVYVEDGIVVAV--------QPNINV--GDDVKVLDATGKFVMPGGIDPHTH 113
AD+ V+DG + A+ QPN+ + G +V+ A GK V GGID H H
Sbjct: 84 ADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1EJS|C Chain C, Crystal Structure Of The H219n Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 71 ADVYVEDGIVVAV--------QPNINV--GDDVKVLDATGKFVMPGGIDPHTH 113
AD+ V+DG + A+ QPN+ + G +V+ A GK V GGID H H
Sbjct: 84 ADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1A5M|C Chain C, K217a Variant Of Klebsiella Aerogenes Urease
pdb|1A5N|C Chain C, K217a Variant Of Klebsiella Aerogenes Urease, Chemically
Rescued By Formate And Nickel
Length = 566
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 71 ADVYVEDGIVVAV--------QPNINV--GDDVKVLDATGKFVMPGGIDPHTH 113
AD+ V+DG + A+ QPN+ + G +V+ A GK V GGID H H
Sbjct: 83 ADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGGIDTHIH 135
>pdb|1FWA|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 7.5
pdb|1FWB|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 6.5
pdb|1FWC|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 8.5
pdb|1FWD|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 9.4
pdb|1FWE|C Chain C, Klebsiella Aerogenes Urease, C319a Variant With
Acetohydroxamic Acid (Aha) Bound
Length = 567
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 71 ADVYVEDGIVVAV--------QPNINV--GDDVKVLDATGKFVMPGGIDPHTH 113
AD+ V+DG + A+ QPN+ + G +V+ A GK V GGID H H
Sbjct: 84 ADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1FWH|C Chain C, Klebsiella Aerogenes Urease, C319y Variant
Length = 567
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 71 ADVYVEDGIVVAV--------QPNINV--GDDVKVLDATGKFVMPGGIDPHTH 113
AD+ V+DG + A+ QPN+ + G +V+ A GK V GGID H H
Sbjct: 84 ADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1FWF|C Chain C, Klebsiella Aerogenes Urease, C319d Variant
Length = 567
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 71 ADVYVEDGIVVAV--------QPNINV--GDDVKVLDATGKFVMPGGIDPHTH 113
AD+ V+DG + A+ QPN+ + G +V+ A GK V GGID H H
Sbjct: 84 ADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1KRA|C Chain C, Crystal Structure Of Klebsiella Aerogenes Urease, Its
Apoenzyme And Two Active Site Mutants
Length = 567
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 71 ADVYVEDGIVVAV--------QPNINV--GDDVKVLDATGKFVMPGGIDPHTH 113
AD+ V+DG + A+ QPN+ + G +V+ A GK V GGID H H
Sbjct: 84 ADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1FWJ|C Chain C, Klebsiella Aerogenes Urease, Native
pdb|1EJX|C Chain C, Crystal Structure Of Wild-Type Klebsiella Aerogenes Urease
At 100k
pdb|1EJW|C Chain C, Crystal Structure Of Wild-type Klebsiella Aerogenes Urease
At 298k
pdb|2KAU|C Chain C, The Crystal Structure Of Urease From Klebsiella Aerogenes
At 2.2 Angstroms Resolution
Length = 567
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 71 ADVYVEDGIVVAV--------QPNINV--GDDVKVLDATGKFVMPGGIDPHTH 113
AD+ V+DG + A+ QPN+ + G +V+ A GK V GGID H H
Sbjct: 84 ADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1A5K|C Chain C, K217e Variant Of Klebsiella Aerogenes Urease
Length = 566
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 71 ADVYVEDGIVVAV--------QPNINV--GDDVKVLDATGKFVMPGGIDPHTH 113
AD+ V+DG + A+ QPN+ + G +V+ A GK V GGID H H
Sbjct: 83 ADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGGIDTHIH 135
>pdb|1A5O|C Chain C, K217c Variant Of Klebsiella Aerogenes Urease, Chemically
Rescued By Formate And Nickel
pdb|1A5L|C Chain C, K217c Variant Of Klebsiella Aerogenes Urease
Length = 566
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 71 ADVYVEDGIVVAV--------QPNINV--GDDVKVLDATGKFVMPGGIDPHTH 113
AD+ V+DG + A+ QPN+ + G +V+ A GK V GGID H H
Sbjct: 83 ADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGGIDTHIH 135
>pdb|1EF2|A Chain A, Crystal Structure Of Manganese-Substituted Klebsiella
Aerogenes Urease
pdb|4EP8|C Chain C, Initial Urease Structure For Radiation Damage Experiment
At 100 K
pdb|4EPB|C Chain C, Final Urease Structure For Radiation Damage Experiment At
100 K
pdb|4EPD|C Chain C, Initial Urease Structure For Radiation Damage Experiment
At 300 K
pdb|4EPE|C Chain C, Final Urease Structure For Radiation Damage Experiment At
300 K
Length = 566
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 71 ADVYVEDGIVVAV--------QPNINV--GDDVKVLDATGKFVMPGGIDPHTH 113
AD+ V+DG + A+ QPN+ + G +V+ A GK V GGID H H
Sbjct: 83 ADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGGIDTHIH 135
>pdb|2OGJ|A Chain A, Crystal Structure Of A Dihydroorotase
pdb|2OGJ|B Chain B, Crystal Structure Of A Dihydroorotase
pdb|2OGJ|C Chain C, Crystal Structure Of A Dihydroorotase
pdb|2OGJ|D Chain D, Crystal Structure Of A Dihydroorotase
pdb|2OGJ|E Chain E, Crystal Structure Of A Dihydroorotase
pdb|2OGJ|F Chain F, Crystal Structure Of A Dihydroorotase
Length = 417
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 17/65 (26%)
Query: 50 QSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
QSS+ ILI G DG + AV + D + +DA G F+ PG +D
Sbjct: 33 QSSTDILIGG-----------------DGKIAAVGSALQAPADTQRIDAKGAFISPGWVD 75
Query: 110 PHTHL 114
H H+
Sbjct: 76 LHVHI 80
>pdb|2P9B|A Chain A, Crystal Structure Of Putative Prolidase From
Bifidobacterium Longum
Length = 458
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 77 DGIVVAVQPNI--NVGDDVKVLDATGKFVMPGGIDPHTHL 114
DG + V P+I ++ + LD TGK V PG I+ HTHL
Sbjct: 41 DGRIEQVAPSIETSIPAEYHYLDGTGKIVXPGLINAHTHL 80
>pdb|2GOK|A Chain A, Crystal Structure Of The Imidazolonepropionase From
Agrobacterium Tumefaciens At 1.87 A Resolution
pdb|2GOK|B Chain B, Crystal Structure Of The Imidazolonepropionase From
Agrobacterium Tumefaciens At 1.87 A Resolution
Length = 429
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Query: 73 VYVEDGIVVAVQPNINVGDDVKVLDAT----GKFVMPGGIDPHTHL------AMEF 118
+ V +G + P ++ DD+ D T G+++ P ID HTHL AMEF
Sbjct: 44 IAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITPALIDCHTHLVFGGNRAMEF 99
>pdb|2PUZ|A Chain A, Crystal Structure Of Imidazolonepropionase From
Agrobacterium Tumefaciens With Bound Product
N-Formimino-L-Glutamate
pdb|2PUZ|B Chain B, Crystal Structure Of Imidazolonepropionase From
Agrobacterium Tumefaciens With Bound Product
N-Formimino-L-Glutamate
Length = 419
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Query: 73 VYVEDGIVVAVQPNINVGDDVKVLDAT----GKFVMPGGIDPHTHL------AMEF 118
+ V +G + P ++ DD+ D T G+++ P ID HTHL AMEF
Sbjct: 42 IAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITPALIDCHTHLVFGGNRAMEF 97
>pdb|3GIP|A Chain A, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc, Acetate
And Formate Ions.
pdb|3GIP|B Chain B, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc, Acetate
And Formate Ions.
pdb|3GIQ|A Chain A, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc And
Phosphonate Inhibitor, A Mimic Of The Reaction
Tetrahedral Intermediate.
pdb|3GIQ|B Chain B, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc And
Phosphonate Inhibitor, A Mimic Of The Reaction
Tetrahedral Intermediate
Length = 480
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 49 IQSSSKI--LIKGGTVVNA--HHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVM 104
+Q++ K+ I GG +++ ++ AD+ V DG + A+ + DA+GK V
Sbjct: 1 MQNAEKLDFKITGGWIIDGTGAPRRRADLGVRDGRIAAIG-ELGAHPARHAWDASGKIVA 59
Query: 105 PGGIDPHTHLAMEFM 119
PG ID H H + F+
Sbjct: 60 PGFIDVHGHDDLMFV 74
>pdb|3ICJ|A Chain A, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Pyrococcus Furiosus
Length = 534
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 94 KVLDATGKFVMPGGIDPHTHLAMEFMGSETID 125
+++D GKFVMP D H HL M E +D
Sbjct: 84 EIIDLKGKFVMPAFFDSHLHLDELGMSLEMVD 115
>pdb|1FWI|C Chain C, Klebsiella Aerogenes Urease, H134a Variant
Length = 567
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 10/53 (18%)
Query: 71 ADVYVEDGIVVAV--------QPNINV--GDDVKVLDATGKFVMPGGIDPHTH 113
AD+ V+DG + A+ QPN+ + G +V+ A GK V GGID H
Sbjct: 84 ADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGGIDTAIH 136
>pdb|2QT3|A Chain A, Crystal Structure Of N-Isopropylammelide
Isopropylaminohydrolase Atzc From Pseudomonas Sp. Strain
Adp Complexed With Zn
pdb|2QT3|B Chain B, Crystal Structure Of N-Isopropylammelide
Isopropylaminohydrolase Atzc From Pseudomonas Sp. Strain
Adp Complexed With Zn
Length = 403
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 96 LDATGKFVMPGGIDPHTHLAMEFMGS-ETIDDFFS 129
+DA G V PG +D HTH+ F + E + F+S
Sbjct: 45 IDAKGNLVSPGFVDAHTHMDKSFTSTGERLPKFWS 79
>pdb|3IGH|X Chain X, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 49 IQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
++ S ++I G V+ A ++A VE ++ G+ ++D GK+VMP
Sbjct: 18 LKKVSGLVISHGKVIYAGDSEVAKKIVE----------LSGGE---IVDLKGKYVMPAFF 64
Query: 109 DPHTHLAMEFMGSETID 125
D H HL M E +D
Sbjct: 65 DSHLHLDELGMSLEMVD 81
>pdb|3LS9|A Chain A, Crystal Structure Of Atrazine Chlorohydrolase Trzn From
Arthrobacter Aurescens Tc1 Complexed With Zinc
pdb|3LS9|B Chain B, Crystal Structure Of Atrazine Chlorohydrolase Trzn From
Arthrobacter Aurescens Tc1 Complexed With Zinc
Length = 456
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 55 ILIKGGTVV-----NAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
ILI+G T V + AD+ ++ +VAV +++ + +D G +PG I+
Sbjct: 2 ILIRGLTRVITFDDQERELEDADILIDGPKIVAVGKDLSDRSVSRTIDGRGMIALPGLIN 61
Query: 110 PHTHL 114
H HL
Sbjct: 62 SHQHL 66
>pdb|3LSB|A Chain A, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Ametrin
pdb|3LSB|B Chain B, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Ametrin
pdb|3LSC|A Chain A, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Atraton
pdb|3LSC|B Chain B, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Atraton
Length = 456
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 55 ILIKGGTVV-----NAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
ILI+G T V + AD+ ++ +VAV +++ + +D G +PG I+
Sbjct: 2 ILIRGLTRVITFDDQERELEDADILIDGPKIVAVGKDLSDRSVSRTIDGRGMIALPGLIN 61
Query: 110 PHTHL 114
H HL
Sbjct: 62 SHQHL 66
>pdb|1E9Z|B Chain B, Crystal Structure Of Helicobacter Pylori Urease
Length = 569
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 83 VQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTT 140
V+ N++VG + L G V GGID H H F+ + I F+ + GG T
Sbjct: 108 VKNNLSVGPATEALAGEGLIVTAGGIDTHIH----FISPQQIPTAFASGVTTMIGGGT 161
>pdb|1E9Y|B Chain B, Crystal Structure Of Helicobacter Pylori Urease In Complex
With Acetohydroxamic Acid
Length = 569
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 83 VQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTT 140
V+ N++VG + L G V GGID H H F+ + I F+ + GG T
Sbjct: 108 VKNNLSVGPATEALAGEGLIVTAGGIDTHIH----FISPQQIPTAFASGVTTMIGGGT 161
>pdb|4EPS|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacova_04982)
From Bacteroides Ovatus Atcc 8483 At 1.85 A Resolution
Length = 510
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 42 YGGPQCGIQSSSK--------ILIKGGTVVNAHHQQIADVYVEDGIVVA 82
Y QC + ++ K ++ GG HH Q+ D Y DG VV+
Sbjct: 234 YNDKQCTLDTAEKXKEGKYKRFVVDGGYKEVTHHLQVGDYYYADGSVVS 282
>pdb|3O6V|A Chain A, Crystal Structure Of Uridine Phosphorylase From Vibrio
Cholerae O1 Biovar El Tor
pdb|3O6V|B Chain B, Crystal Structure Of Uridine Phosphorylase From Vibrio
Cholerae O1 Biovar El Tor
Length = 261
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 74 YVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA-MEFMGSETIDDFFSGQA 132
++ G A+QP++NVGD ++ TG + G H A MEF D + +A
Sbjct: 96 FLRVGTTGAIQPHVNVGD---MIVTTGSVRLDGA---SLHFAPMEFPAVPDFDVATAMKA 149
Query: 133 AALAGGTTMHI 143
AA G T+H+
Sbjct: 150 AAQESGATVHM 160
>pdb|1P1M|A Chain A, Structure Of Thermotoga Maritima Amidohydrolase Tm0936
Bound To Ni And Methionine
pdb|2PLM|A Chain A, Crystal Structure Of The Protein Tm0936 From Thermotoga
Maritima Complexed With Zn And S-Inosylhomocysteine
Length = 406
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 73 VYVEDGIVVAVQPNINVGDDVKV-LDATGKFVMPGGIDPHTHLAMEFM 119
V +E+G + V + +VKV LD +GK VMP + HTH M +
Sbjct: 21 VEIENGTIKRV-----LQGEVKVDLDLSGKLVMPALFNTHTHAPMTLL 63
>pdb|2OOF|A Chain A, The Crystal Structure Of 4-imidazolone-5-propanoate
Amidohydrolase From Environmental Sample
pdb|2Q09|A Chain A, Crystal Structure Of Imidazolonepropionase From
Environmental Sample With Bound Inhibitor
3-(2,5-Dioxo-Imidazolidin-4-Yl)-Propionic Acid
Length = 416
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 97 DATGKFVMPGGIDPHTHLAMEFMGSE 122
D GK V PG ID HTHL F GS
Sbjct: 58 DXKGKLVTPGLIDCHTHLI--FAGSR 81
>pdb|3QGA|C Chain C, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|F Chain F, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|I Chain I, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|L Chain L, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|O Chain O, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|R Chain R, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGK|C Chain C, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|F Chain F, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|I Chain I, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|L Chain L, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|O Chain O, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|R Chain R, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
Length = 568
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 82 AVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTM 141
V P++ VG + L G + GGID HTH F+ + + + GG T
Sbjct: 106 GVTPHMVVGVGTEALAGEGMIITAGGIDSHTH----FLSPQQFPTALANGVTTMFGGGTG 161
Query: 142 HID 144
+D
Sbjct: 162 PVD 164
>pdb|4DZH|A Chain A, Crystal Structure Of An Adenosine Deaminase From
Xanthomonas Campestris (Target Nysgrc-200456) With Bound
Zn
Length = 472
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 15/76 (19%)
Query: 55 ILIKGGTVV--NAHHQQIAD--VYVEDGIVVAVQPNINVGDDVKVLDATGKFV------- 103
+LI+ G VV H + D V V +G++VAV P D +V A + V
Sbjct: 16 LLIEAGYVVPIEPHAVVLEDHAVAVSNGVIVAVLPTA----DARVRFAPARTVSRPDAAL 71
Query: 104 MPGGIDPHTHLAMEFM 119
MPG ++ HTH M +
Sbjct: 72 MPGLVNAHTHNPMTLL 87
>pdb|3FEQ|A Chain A, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|B Chain B, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|C Chain C, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|D Chain D, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|E Chain E, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|F Chain F, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|G Chain G, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|H Chain H, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|I Chain I, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|J Chain J, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|K Chain K, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|L Chain L, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|M Chain M, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|N Chain N, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|O Chain O, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|P Chain P, Crystal Structure Of Uncharacterized Protein Eah89906
Length = 423
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 92 DVKVLDATGKFVMPGGIDPHTHL 114
+ + +D GK VMPG ID H H+
Sbjct: 46 NAQAIDVRGKTVMPGFIDCHVHV 68
>pdb|3N2C|A Chain A, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|B Chain B, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|C Chain C, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|D Chain D, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|E Chain E, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|F Chain F, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|G Chain G, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|H Chain H, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|I Chain I, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|J Chain J, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|K Chain K, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|L Chain L, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|M Chain M, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|N Chain N, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|O Chain O, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|P Chain P, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
Length = 423
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 92 DVKVLDATGKFVMPGGIDPHTHL 114
+ + +D GK VMPG ID H H+
Sbjct: 46 NAQAIDVRGKTVMPGFIDCHVHV 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,238,408
Number of Sequences: 62578
Number of extensions: 361642
Number of successful extensions: 903
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 808
Number of HSP's gapped (non-prelim): 82
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)