Query 020079
Match_columns 331
No_of_seqs 272 out of 2357
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 06:51:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02942 dihydropyrimidinase 100.0 1.3E-37 2.8E-42 297.6 32.6 271 52-322 4-274 (486)
2 PLN02795 allantoinase 100.0 7.9E-36 1.7E-40 285.5 35.0 276 43-323 34-326 (505)
3 KOG2584 Dihydroorotase and rel 100.0 1.1E-36 2.3E-41 269.6 24.3 259 53-311 14-274 (522)
4 TIGR02033 D-hydantoinase D-hyd 100.0 1.6E-35 3.5E-40 282.4 32.1 268 55-322 1-270 (454)
5 PRK13404 dihydropyrimidinase; 100.0 1.9E-35 4E-40 281.8 32.3 268 52-323 3-274 (477)
6 PRK08323 phenylhydantoinase; V 100.0 1.9E-35 4E-40 282.3 32.3 264 54-322 2-267 (459)
7 cd01314 D-HYD D-hydantoinases 100.0 1.9E-35 4.1E-40 281.2 31.4 267 55-322 1-269 (447)
8 COG0044 PyrC Dihydroorotase an 100.0 1.3E-35 2.8E-40 275.8 28.4 260 54-323 2-263 (430)
9 PRK07369 dihydroorotase; Provi 100.0 5.3E-35 1.2E-39 273.8 26.0 261 52-323 1-267 (418)
10 TIGR03178 allantoinase allanto 100.0 9.6E-34 2.1E-38 268.8 31.4 262 54-322 1-268 (443)
11 cd01315 L-HYD_ALN L-Hydantoina 100.0 1.3E-33 2.8E-38 268.7 31.5 263 54-322 1-269 (447)
12 PRK07627 dihydroorotase; Provi 100.0 2.2E-34 4.9E-39 270.4 25.0 260 54-323 2-266 (425)
13 PRK06189 allantoinase; Provisi 100.0 6.9E-33 1.5E-37 263.2 31.7 266 51-323 1-272 (451)
14 PRK09059 dihydroorotase; Valid 100.0 2.6E-33 5.6E-38 263.5 24.9 262 51-322 1-270 (429)
15 PRK08044 allantoinase; Provisi 100.0 7.2E-32 1.6E-36 255.5 31.6 264 52-323 2-275 (449)
16 PRK08417 dihydroorotase; Provi 100.0 5.7E-32 1.2E-36 251.7 23.6 231 73-323 1-235 (386)
17 PRK02382 dihydroorotase; Provi 100.0 1.1E-30 2.5E-35 247.5 29.0 257 52-322 1-261 (443)
18 PRK09060 dihydroorotase; Valid 100.0 2.1E-30 4.6E-35 245.3 29.4 256 52-322 4-263 (444)
19 PRK09357 pyrC dihydroorotase; 100.0 1.1E-30 2.4E-35 246.7 26.6 259 54-323 2-264 (423)
20 PRK09236 dihydroorotase; Revie 100.0 6E-30 1.3E-34 242.6 30.9 261 53-322 2-268 (444)
21 TIGR00857 pyrC_multi dihydroor 100.0 3.9E-30 8.4E-35 241.6 26.7 246 69-323 4-252 (411)
22 PRK07575 dihydroorotase; Provi 100.0 5.6E-29 1.2E-33 235.4 29.1 257 51-322 1-262 (438)
23 cd01297 D-aminoacylase D-amino 100.0 3.1E-28 6.8E-33 229.1 22.3 233 54-320 1-287 (415)
24 PRK06687 chlorohydrolase; Vali 100.0 8.7E-27 1.9E-31 219.9 23.2 264 55-325 2-314 (419)
25 PRK09061 D-glutamate deacylase 100.0 2.1E-26 4.5E-31 220.8 25.9 232 53-324 19-292 (509)
26 PRK04250 dihydroorotase; Provi 100.0 2.5E-26 5.4E-31 214.0 25.4 230 59-323 3-235 (398)
27 PRK15493 5-methylthioadenosine 100.0 1.7E-26 3.8E-31 218.3 24.5 269 54-329 2-319 (435)
28 PRK01211 dihydroorotase; Provi 99.9 1.7E-26 3.7E-31 215.1 21.0 233 57-323 3-237 (409)
29 cd01317 DHOase_IIa Dihydroorot 99.9 4.1E-25 8.8E-30 205.3 20.5 221 93-323 2-225 (374)
30 TIGR03314 Se_ssnA putative sel 99.9 3.6E-24 7.8E-29 202.9 22.3 255 55-316 1-312 (441)
31 PRK00369 pyrC dihydroorotase; 99.9 5.4E-24 1.2E-28 197.4 22.3 211 69-323 12-225 (392)
32 cd01318 DHOase_IIb Dihydroorot 99.9 4.3E-24 9.4E-29 196.8 21.4 204 100-322 1-207 (361)
33 PRK07203 putative chlorohydrol 99.9 1.2E-23 2.5E-28 199.9 24.8 256 55-317 2-314 (442)
34 cd01298 ATZ_TRZ_like TRZ/ATZ f 99.9 1.1E-23 2.4E-28 198.4 22.6 253 55-315 1-301 (411)
35 PRK06380 metal-dependent hydro 99.9 2.6E-23 5.6E-28 196.3 25.0 262 54-328 2-308 (418)
36 PRK07228 N-ethylammeline chlor 99.9 2.3E-23 4.9E-28 198.2 24.6 253 54-315 2-306 (445)
37 PRK08203 hydroxydechloroatrazi 99.9 2E-23 4.3E-28 198.8 24.1 254 55-315 4-321 (451)
38 cd01302 Cyclic_amidohydrolases 99.9 8.7E-24 1.9E-28 193.5 20.2 180 101-322 1-185 (337)
39 PRK09045 N-ethylammeline chlor 99.9 3.8E-23 8.2E-28 196.4 24.3 252 53-315 7-309 (443)
40 PRK09228 guanine deaminase; Pr 99.9 2.7E-23 5.8E-28 196.4 22.9 251 69-326 30-332 (433)
41 PRK12393 amidohydrolase; Provi 99.9 6.1E-23 1.3E-27 195.4 24.6 256 52-315 1-325 (457)
42 TIGR02967 guan_deamin guanine 99.9 2.9E-23 6.2E-28 195.0 21.6 242 69-317 5-298 (401)
43 PRK15446 phosphonate metabolis 99.9 4.6E-23 1E-27 191.4 20.5 231 53-311 2-252 (383)
44 PRK08393 N-ethylammeline chlor 99.9 2.7E-22 5.8E-27 189.5 24.5 264 54-329 2-311 (424)
45 cd01293 Bact_CD Bacterial cyto 99.9 1.1E-22 2.4E-27 190.9 21.4 255 57-315 2-307 (398)
46 PRK06038 N-ethylammeline chlor 99.9 3.3E-22 7.2E-27 189.1 24.8 251 53-315 2-297 (430)
47 cd01303 GDEase Guanine deamina 99.9 2E-22 4.4E-27 190.4 22.3 241 69-316 25-319 (429)
48 PRK08204 hypothetical protein; 99.9 1.8E-22 3.9E-27 192.3 21.8 255 53-315 2-301 (449)
49 PRK06151 N-ethylammeline chlor 99.9 2.5E-22 5.4E-27 192.7 21.6 260 54-316 2-338 (488)
50 PRK08418 chlorohydrolase; Prov 99.9 4.5E-22 9.8E-27 186.6 20.6 260 55-329 2-326 (408)
51 COG3964 Predicted amidohydrola 99.9 3.7E-22 8.1E-27 170.3 17.8 272 51-329 2-297 (386)
52 COG0402 SsnA Cytosine deaminas 99.9 1.4E-21 3.1E-26 184.3 22.5 268 54-329 3-320 (421)
53 PRK05985 cytosine deaminase; P 99.9 3.7E-21 8E-26 180.1 23.6 254 53-315 2-296 (391)
54 PRK07572 cytosine deaminase; V 99.9 6.3E-21 1.4E-25 180.2 24.4 252 53-315 2-309 (426)
55 PRK12394 putative metallo-depe 99.9 2.5E-21 5.5E-26 180.2 20.8 254 52-314 2-274 (379)
56 PRK07213 chlorohydrolase; Prov 99.9 8.6E-21 1.9E-25 176.4 22.1 241 55-316 2-285 (375)
57 TIGR02318 phosphono_phnM phosp 99.9 2.5E-21 5.5E-26 179.3 18.4 212 56-292 1-230 (376)
58 PRK13207 ureC urease subunit a 99.9 1E-20 2.2E-25 179.3 22.2 208 52-308 66-294 (568)
59 cd01316 CAD_DHOase The eukaryo 99.9 6.2E-21 1.3E-25 174.1 19.9 184 101-323 2-188 (344)
60 PRK13308 ureC urease subunit a 99.9 8.5E-21 1.8E-25 178.8 20.6 170 52-240 67-253 (569)
61 PRK13206 ureC urease subunit a 99.9 1.5E-20 3.3E-25 177.8 22.2 207 52-307 70-299 (573)
62 PRK09230 cytosine deaminase; P 99.9 6E-20 1.3E-24 173.1 24.8 254 53-315 4-313 (426)
63 TIGR02022 hutF formiminoglutam 99.9 5.6E-21 1.2E-25 181.8 17.9 249 55-316 4-323 (455)
64 cd01312 Met_dep_hydrolase_D Me 99.9 7.9E-21 1.7E-25 176.5 18.0 226 78-315 1-288 (381)
65 PRK14085 imidazolonepropionase 99.9 6.3E-20 1.4E-24 171.1 24.1 245 54-315 2-300 (382)
66 TIGR01178 ade adenine deaminas 99.9 7E-20 1.5E-24 176.4 23.9 238 54-315 1-251 (552)
67 cd00375 Urease_alpha Urease al 99.9 4.9E-20 1.1E-24 173.6 22.2 193 52-293 64-276 (567)
68 cd01313 Met_dep_hydrolase_E Me 99.9 1.7E-20 3.7E-25 176.7 18.6 235 69-315 9-313 (418)
69 PRK09356 imidazolonepropionase 99.9 1.4E-19 3E-24 170.4 23.1 250 51-315 1-316 (406)
70 PRK13985 ureB urease subunit b 99.9 1.1E-19 2.4E-24 170.7 22.1 206 52-306 64-292 (568)
71 TIGR01792 urease_alph urease, 99.9 1.1E-19 2.3E-24 172.8 21.5 175 52-245 65-260 (567)
72 PRK09237 dihydroorotase; Provi 99.8 1.5E-19 3.2E-24 168.6 21.3 252 55-314 1-269 (380)
73 TIGR01975 isoAsp_dipep isoaspa 99.8 4E-19 8.7E-24 164.6 23.2 250 55-310 2-278 (389)
74 PRK09229 N-formimino-L-glutama 99.8 5.6E-20 1.2E-24 175.2 17.2 249 54-315 4-322 (456)
75 cd01307 Met_dep_hydrolase_B Me 99.8 2.5E-19 5.4E-24 164.4 20.1 236 72-314 1-250 (338)
76 PRK06846 putative deaminase; V 99.8 5.2E-19 1.1E-23 166.4 22.7 256 55-315 6-311 (410)
77 PRK10657 isoaspartyl dipeptida 99.8 9.3E-19 2E-23 163.8 24.1 255 55-315 3-285 (388)
78 PRK13309 ureC urease subunit a 99.8 4.1E-19 8.9E-24 168.9 21.0 170 52-240 67-257 (572)
79 PLN02303 urease 99.8 1.7E-18 3.6E-23 168.5 21.6 186 52-256 333-549 (837)
80 COG1001 AdeC Adenine deaminase 99.8 1.1E-18 2.3E-23 163.0 19.5 243 50-314 21-277 (584)
81 cd01294 DHOase Dihydroorotase 99.8 6.9E-19 1.5E-23 161.2 17.3 190 103-323 2-199 (335)
82 PRK10027 cryptic adenine deami 99.8 8.8E-18 1.9E-22 162.2 24.2 231 52-304 29-271 (588)
83 PRK07583 cytosine deaminase-li 99.8 4.3E-18 9.4E-23 161.4 21.5 256 52-317 10-333 (438)
84 cd01299 Met_dep_hydrolase_A Me 99.8 1.4E-18 3.1E-23 159.8 17.0 206 94-315 2-271 (342)
85 TIGR01224 hutI imidazoloneprop 99.8 1.6E-17 3.4E-22 155.0 20.6 245 69-328 2-305 (377)
86 cd01308 Isoaspartyl-dipeptidas 99.8 4.4E-17 9.6E-22 152.4 23.3 248 55-308 2-274 (387)
87 TIGR03583 EF_0837 probable ami 99.8 7.5E-17 1.6E-21 149.6 22.4 242 54-308 2-259 (365)
88 cd01296 Imidazolone-5PH Imidaz 99.8 1.7E-17 3.8E-22 154.3 16.6 232 73-319 1-292 (371)
89 cd00854 NagA N-acetylglucosami 99.7 5.5E-17 1.2E-21 150.7 17.2 191 56-258 2-213 (374)
90 COG1574 Predicted metal-depend 99.7 1.1E-16 2.5E-21 152.1 19.0 66 51-116 3-74 (535)
91 TIGR00221 nagA N-acetylglucosa 99.7 2.3E-16 5E-21 145.8 17.2 110 53-162 3-115 (380)
92 COG1228 HutI Imidazolonepropio 99.7 7.8E-16 1.7E-20 143.0 17.3 250 53-315 10-314 (406)
93 PRK11170 nagA N-acetylglucosam 99.7 2.5E-15 5.3E-20 139.3 17.6 108 55-162 2-116 (382)
94 KOG3968 Atrazine chlorohydrola 99.7 7.2E-16 1.6E-20 138.0 13.2 243 69-316 26-332 (439)
95 PLN02599 dihydroorotase 99.7 2.2E-15 4.8E-20 138.0 16.6 191 102-323 23-224 (364)
96 PF13594 Amidohydro_5: Amidohy 99.7 3.3E-16 7.2E-21 108.9 7.1 67 73-142 1-68 (68)
97 cd01300 YtcJ_like YtcJ_like me 99.7 5.2E-15 1.1E-19 142.3 17.7 85 210-321 290-374 (479)
98 TIGR03121 one_C_dehyd_A formyl 99.6 7.1E-14 1.5E-18 132.6 21.5 227 55-315 2-305 (556)
99 cd01304 FMDH_A Formylmethanofu 99.6 9.2E-14 2E-18 131.2 20.9 227 57-317 1-304 (541)
100 COG3653 N-acyl-D-aspartate/D-g 99.6 8.4E-14 1.8E-18 124.7 18.4 84 53-143 6-92 (579)
101 PRK05451 dihydroorotase; Provi 99.6 5.7E-14 1.2E-18 128.9 16.9 190 102-323 5-205 (345)
102 TIGR00856 pyrC_dimer dihydroor 99.6 1.1E-13 2.5E-18 126.4 15.6 191 102-323 2-202 (341)
103 cd01295 AdeC Adenine deaminase 99.5 5E-13 1.1E-17 126.2 18.7 199 97-315 1-210 (422)
104 COG3454 Metal-dependent hydrol 99.5 7.7E-13 1.7E-17 114.8 16.0 178 56-235 2-230 (377)
105 COG1820 NagA N-acetylglucosami 99.5 5.7E-13 1.2E-17 120.0 15.4 88 55-143 2-92 (380)
106 COG0804 UreC Urea amidohydrola 99.5 1.3E-12 2.8E-17 116.2 16.1 170 53-241 67-254 (568)
107 cd01305 archeal_chlorohydrolas 99.5 2.4E-13 5.3E-18 120.4 9.4 186 102-315 1-221 (263)
108 cd01309 Met_dep_hydrolase_C Me 99.3 2.1E-11 4.4E-16 112.9 14.9 227 77-315 1-279 (359)
109 PRK06886 hypothetical protein; 99.3 1.7E-10 3.7E-15 104.6 17.8 202 106-315 21-280 (329)
110 cd01292 metallo-dependent_hydr 99.2 3.7E-10 8E-15 99.7 13.6 130 107-238 1-156 (275)
111 COG1229 FwdA Formylmethanofura 99.1 4.5E-09 9.7E-14 94.1 14.4 64 52-117 2-68 (575)
112 PF01979 Amidohydro_1: Amidohy 98.8 3.6E-08 7.8E-13 90.1 9.5 135 102-238 1-173 (333)
113 cd01306 PhnM PhnM is believed 98.7 6.5E-07 1.4E-11 81.1 15.2 196 104-314 1-253 (325)
114 PF13147 Amidohydro_4: Amidohy 98.7 3.5E-07 7.7E-12 81.6 13.3 127 97-236 1-130 (304)
115 PF12890 DHOase: Dihydro-orota 98.6 1.1E-07 2.4E-12 72.4 6.8 136 100-294 1-140 (142)
116 COG0084 TatD Mg-dependent DNas 98.6 2E-06 4.2E-11 75.1 14.4 174 106-320 2-184 (256)
117 KOG2902 Dihydroorotase [Nucleo 98.5 8.4E-07 1.8E-11 74.5 10.2 193 102-323 5-205 (344)
118 PRK10812 putative DNAse; Provi 98.5 2.1E-06 4.6E-11 75.9 12.9 127 107-237 3-133 (265)
119 cd01310 TatD_DNAse TatD like p 98.5 4E-06 8.7E-11 73.5 14.3 125 107-237 1-130 (251)
120 KOG3892 N-acetyl-glucosamine-6 98.5 2.6E-07 5.7E-12 78.8 5.9 91 54-144 13-109 (407)
121 TIGR00010 hydrolase, TatD fami 98.5 3.7E-06 8E-11 73.8 13.4 125 107-237 1-130 (252)
122 PRK10425 DNase TatD; Provision 98.4 8.2E-06 1.8E-10 71.8 13.0 124 107-236 1-129 (258)
123 PRK11449 putative deoxyribonuc 98.4 2.5E-05 5.4E-10 68.8 15.9 128 104-237 2-136 (258)
124 cd00530 PTE Phosphotriesterase 98.4 2E-05 4.4E-10 70.9 15.6 207 106-319 1-248 (293)
125 PRK09358 adenosine deaminase; 98.3 5.1E-05 1.1E-09 69.8 17.2 112 211-329 178-296 (340)
126 PF01026 TatD_DNase: TatD rela 98.2 1.7E-05 3.7E-10 69.9 12.0 124 108-237 1-133 (255)
127 COG0418 PyrC Dihydroorotase [N 98.2 0.00013 2.8E-09 63.7 15.4 189 102-322 5-204 (344)
128 COG1099 Predicted metal-depend 98.2 4.8E-05 1.1E-09 63.5 12.1 120 107-236 2-135 (254)
129 cd01320 ADA Adenosine deaminas 98.1 0.00017 3.6E-09 66.0 17.0 97 212-315 170-273 (325)
130 TIGR01430 aden_deam adenosine 98.1 0.00013 2.7E-09 66.7 15.8 98 211-315 168-272 (324)
131 PRK09875 putative hydrolase; P 98.0 0.00028 6E-09 63.1 15.6 149 106-255 7-179 (292)
132 PF02126 PTE: Phosphotriestera 97.9 0.00018 3.8E-09 64.9 12.5 178 106-315 7-215 (308)
133 COG1735 Php Predicted metal-de 97.7 0.0021 4.5E-08 56.6 14.9 180 106-314 17-224 (316)
134 cd01311 PDC_hydrolase 2-pyrone 97.7 0.004 8.7E-08 55.1 16.6 49 185-236 83-131 (263)
135 cd00443 ADA_AMPD Adenosine/AMP 97.2 0.022 4.7E-07 51.6 15.8 109 213-329 151-267 (305)
136 cd01321 ADGF Adenosine deamina 96.9 0.13 2.8E-06 47.4 18.0 108 212-327 176-298 (345)
137 PF00449 Urease_alpha: Urease 96.5 0.0067 1.4E-07 45.2 5.4 36 52-87 65-100 (121)
138 PTZ00124 adenosine deaminase; 96.2 0.24 5.2E-06 45.9 14.7 107 215-328 206-322 (362)
139 PRK08392 hypothetical protein; 96.0 0.79 1.7E-05 39.1 16.3 184 108-322 1-189 (215)
140 PF07969 Amidohydro_3: Amidohy 95.8 0.3 6.6E-06 45.8 14.3 108 131-244 136-254 (404)
141 COG1816 Add Adenosine deaminas 95.7 0.46 9.9E-06 43.5 14.1 98 211-315 181-285 (345)
142 COG0826 Collagenase and relate 95.5 0.22 4.7E-06 45.8 11.3 131 182-329 13-157 (347)
143 PF00962 A_deaminase: Adenosin 95.4 0.083 1.8E-06 48.3 8.5 137 181-327 146-292 (331)
144 PF04909 Amidohydro_2: Amidohy 95.2 0.13 2.8E-06 45.2 9.0 113 181-316 83-198 (273)
145 COG4464 CapC Capsular polysacc 94.4 0.67 1.5E-05 39.0 10.3 39 107-145 1-40 (254)
146 smart00518 AP2Ec AP endonuclea 93.7 2.7 5.9E-05 37.1 14.0 42 194-235 21-65 (273)
147 PRK12330 oxaloacetate decarbox 93.7 2.3 5.1E-05 41.0 14.1 124 127-255 99-228 (499)
148 PRK08609 hypothetical protein; 93.3 4.4 9.5E-05 40.1 15.8 52 271-322 480-533 (570)
149 COG1387 HIS2 Histidinol phosph 93.3 3.2 7E-05 36.0 13.3 53 270-322 147-201 (237)
150 PRK12581 oxaloacetate decarbox 93.1 4.2 9E-05 39.0 14.6 128 123-255 102-234 (468)
151 PRK14042 pyruvate carboxylase 92.9 3.3 7.1E-05 41.0 14.1 124 127-254 98-224 (596)
152 PF07969 Amidohydro_3: Amidohy 92.6 0.04 8.6E-07 51.8 0.4 15 102-116 1-15 (404)
153 TIGR01496 DHPS dihydropteroate 92.3 1.6 3.4E-05 38.5 10.1 119 182-313 23-170 (257)
154 PRK01060 endonuclease IV; Prov 92.3 7.2 0.00016 34.5 14.6 48 188-235 17-70 (281)
155 COG2159 Predicted metal-depend 92.2 7.6 0.00017 34.9 14.5 112 182-316 112-226 (293)
156 KOG3020 TatD-related DNase [Re 92.0 3.8 8.3E-05 36.6 12.1 136 96-237 7-157 (296)
157 cd00019 AP2Ec AP endonuclease 92.0 6.3 0.00014 34.9 13.8 19 271-289 124-142 (279)
158 COG5016 Pyruvate/oxaloacetate 91.8 6.4 0.00014 36.6 13.4 124 128-255 101-227 (472)
159 PRK14042 pyruvate carboxylase 91.7 15 0.00032 36.5 20.3 179 122-310 23-225 (596)
160 COG3618 Predicted metal-depend 91.6 5.5 0.00012 35.2 12.4 24 214-237 123-146 (279)
161 PRK07328 histidinol-phosphatas 91.4 9.6 0.00021 33.7 18.1 53 270-322 177-236 (269)
162 TIGR01431 adm_rel adenosine de 90.5 6.5 0.00014 38.0 12.9 96 212-315 303-411 (479)
163 PRK12331 oxaloacetate decarbox 90.0 8.7 0.00019 36.8 13.3 122 128-254 99-224 (448)
164 PRK13352 thiamine biosynthesis 89.1 19 0.00042 33.6 15.7 55 269-324 205-275 (431)
165 PRK07945 hypothetical protein; 88.9 19 0.0004 33.1 16.0 50 272-321 247-298 (335)
166 PRK09358 adenosine deaminase; 88.7 19 0.00041 33.0 15.1 34 288-323 223-257 (340)
167 PRK09856 fructoselysine 3-epim 88.5 17 0.00036 32.0 13.6 48 186-234 17-66 (275)
168 PRK14041 oxaloacetate decarbox 88.2 9.6 0.00021 36.6 12.2 128 123-254 92-223 (467)
169 cd07937 DRE_TIM_PC_TC_5S Pyruv 88.0 18 0.0004 32.1 13.3 110 128-241 94-205 (275)
170 PRK07709 fructose-bisphosphate 87.4 17 0.00037 32.5 12.5 68 184-255 157-229 (285)
171 PRK09248 putative hydrolase; V 87.2 19 0.00041 31.3 17.0 34 107-143 4-37 (246)
172 PRK08610 fructose-bisphosphate 86.8 11 0.00024 33.7 11.0 67 184-254 157-228 (286)
173 KOG1097 Adenine deaminase/aden 86.7 15 0.00032 34.3 11.9 97 212-315 224-328 (399)
174 TIGR01430 aden_deam adenosine 86.4 12 0.00025 34.1 11.4 34 288-323 213-247 (324)
175 PRK15446 phosphonate metabolis 86.2 3.2 6.9E-05 38.9 7.7 90 211-315 210-305 (383)
176 PRK12738 kbaY tagatose-bisphos 86.2 18 0.0004 32.3 12.1 66 185-254 157-227 (286)
177 PRK14040 oxaloacetate decarbox 86.2 38 0.00083 33.7 21.3 181 121-311 23-227 (593)
178 PTZ00372 endonuclease 4-like p 86.0 31 0.00068 32.6 16.2 73 159-235 121-199 (413)
179 PF01261 AP_endonuc_2: Xylose 85.6 16 0.00034 30.3 11.2 90 183-292 27-134 (213)
180 TIGR00190 thiC thiamine biosyn 85.5 32 0.00068 32.2 15.3 22 129-150 81-102 (423)
181 PRK14040 oxaloacetate decarbox 85.5 25 0.00054 35.0 13.7 127 124-254 95-225 (593)
182 PF01261 AP_endonuc_2: Xylose 85.4 6.5 0.00014 32.7 8.8 113 194-320 6-138 (213)
183 cd00947 TBP_aldolase_IIB Tagat 85.2 21 0.00046 31.7 11.9 66 185-254 150-221 (276)
184 PF00834 Ribul_P_3_epim: Ribul 85.0 22 0.00048 30.0 12.1 96 185-318 15-116 (201)
185 TIGR01108 oadA oxaloacetate de 84.8 25 0.00054 34.9 13.4 127 123-254 88-219 (582)
186 PRK09195 gatY tagatose-bisphos 84.6 23 0.00051 31.6 12.0 67 185-255 157-228 (284)
187 TIGR01235 pyruv_carbox pyruvat 84.3 35 0.00076 36.9 15.0 130 123-255 622-760 (1143)
188 PRK12737 gatY tagatose-bisphos 84.1 26 0.00055 31.4 12.0 66 185-254 157-227 (284)
189 PRK08005 epimerase; Validated 83.5 27 0.00058 29.7 11.4 47 185-235 16-65 (210)
190 PRK07998 gatY putative fructos 83.0 16 0.00035 32.6 10.3 68 184-255 154-225 (283)
191 TIGR01858 tag_bisphos_ald clas 83.0 29 0.00062 31.0 11.8 66 185-254 155-225 (282)
192 TIGR03849 arch_ComA phosphosul 82.9 24 0.00053 30.5 10.9 37 195-233 23-59 (237)
193 PRK09282 pyruvate carboxylase 82.6 30 0.00066 34.4 13.0 126 124-253 94-223 (592)
194 PRK12999 pyruvate carboxylase; 82.2 32 0.00068 37.2 13.8 128 124-254 625-761 (1146)
195 cd00952 CHBPH_aldolase Trans-o 81.4 31 0.00067 31.2 11.8 115 188-304 35-160 (309)
196 cd01308 Isoaspartyl-dipeptidas 81.3 29 0.00063 32.3 12.1 50 270-319 200-255 (387)
197 PRK13397 3-deoxy-7-phosphohept 81.3 37 0.0008 29.7 12.5 31 213-243 64-94 (250)
198 COG1831 Predicted metal-depend 81.2 10 0.00022 33.2 8.0 28 213-240 143-170 (285)
199 PRK03170 dihydrodipicolinate s 81.2 30 0.00065 30.9 11.6 110 194-304 33-152 (292)
200 PRK13209 L-xylulose 5-phosphat 81.2 38 0.00083 29.9 14.0 44 190-233 28-75 (283)
201 cd00408 DHDPS-like Dihydrodipi 81.0 32 0.0007 30.4 11.7 112 194-305 29-149 (281)
202 PRK05835 fructose-bisphosphate 80.8 31 0.00067 31.2 11.3 50 185-237 157-213 (307)
203 PRK09230 cytosine deaminase; P 80.8 14 0.0003 35.1 9.8 69 182-253 194-270 (426)
204 PRK00912 ribonuclease P protei 80.5 37 0.0008 29.3 12.0 32 107-143 3-34 (237)
205 PRK10657 isoaspartyl dipeptida 80.4 32 0.00069 32.0 12.0 58 263-321 167-228 (388)
206 TIGR00542 hxl6Piso_put hexulos 80.2 41 0.00089 29.7 13.6 45 188-232 21-69 (279)
207 COG5016 Pyruvate/oxaloacetate 80.1 53 0.0011 30.8 15.4 178 124-310 27-227 (472)
208 TIGR02313 HpaI-NOT-DapA 2,4-di 80.1 44 0.00096 30.0 14.0 117 194-311 32-159 (294)
209 cd00950 DHDPS Dihydrodipicolin 79.8 31 0.00068 30.6 11.3 111 194-305 32-152 (284)
210 TIGR00167 cbbA ketose-bisphosp 79.3 27 0.00059 31.3 10.5 66 185-254 160-231 (288)
211 PRK15452 putative protease; Pr 78.8 52 0.0011 31.5 12.8 47 185-234 13-65 (443)
212 PRK08883 ribulose-phosphate 3- 78.7 39 0.00083 29.0 10.9 48 185-235 15-65 (220)
213 TIGR03249 KdgD 5-dehydro-4-deo 78.0 52 0.0011 29.5 13.6 117 194-311 37-159 (296)
214 PRK07709 fructose-bisphosphate 77.9 26 0.00055 31.4 9.8 126 185-317 90-237 (285)
215 PRK15447 putative protease; Pr 77.7 54 0.0012 29.6 13.3 131 181-328 13-150 (301)
216 TIGR00284 dihydropteroate synt 77.5 67 0.0015 31.3 13.2 113 185-313 168-286 (499)
217 PF02679 ComA: (2R)-phospho-3- 77.4 31 0.00067 30.0 9.9 94 195-315 36-134 (244)
218 PRK07535 methyltetrahydrofolat 76.7 40 0.00086 29.7 10.7 29 216-244 56-85 (261)
219 PRK03620 5-dehydro-4-deoxygluc 76.6 58 0.0012 29.4 13.6 117 194-310 39-160 (303)
220 TIGR00674 dapA dihydrodipicoli 76.5 55 0.0012 29.1 11.8 115 194-310 30-154 (285)
221 PRK12857 fructose-1,6-bisphosp 76.1 58 0.0013 29.1 11.9 66 185-254 157-227 (284)
222 PRK07084 fructose-bisphosphate 75.0 52 0.0011 30.0 11.0 50 185-237 166-226 (321)
223 PF01116 F_bP_aldolase: Fructo 74.8 44 0.00095 29.9 10.5 67 184-253 156-229 (287)
224 PF01791 DeoC: DeoC/LacD famil 74.6 48 0.001 28.6 10.6 103 126-235 20-132 (236)
225 cd00951 KDGDH 5-dehydro-4-deox 74.4 64 0.0014 28.8 13.6 112 194-305 32-148 (289)
226 TIGR02318 phosphono_phnM phosp 74.2 17 0.00037 33.9 8.2 86 213-313 207-298 (376)
227 PRK08610 fructose-bisphosphate 74.1 32 0.0007 30.8 9.4 125 185-317 90-237 (286)
228 PRK08091 ribulose-phosphate 3- 73.8 53 0.0012 28.3 10.4 45 185-235 28-75 (228)
229 COG0329 DapA Dihydrodipicolina 73.8 69 0.0015 28.9 12.6 121 183-305 25-156 (299)
230 cd00953 KDG_aldolase KDG (2-ke 73.6 66 0.0014 28.6 13.7 116 194-311 31-153 (279)
231 TIGR02109 PQQ_syn_pqqE coenzym 73.4 17 0.00036 33.6 7.9 39 271-309 133-175 (358)
232 COG1060 ThiH Thiamine biosynth 73.0 64 0.0014 30.1 11.5 124 121-245 89-234 (370)
233 COG0036 Rpe Pentose-5-phosphat 72.9 59 0.0013 27.8 10.2 49 186-238 20-73 (220)
234 PRK14057 epimerase; Provisiona 72.3 68 0.0015 28.2 11.0 45 185-235 35-82 (254)
235 PF00701 DHDPS: Dihydrodipicol 72.2 70 0.0015 28.5 11.4 111 194-305 33-153 (289)
236 TIGR01856 hisJ_fam histidinol 72.1 67 0.0014 28.0 16.0 52 270-321 185-243 (253)
237 PRK15108 biotin synthase; Prov 71.8 59 0.0013 30.0 11.0 110 194-306 90-212 (345)
238 PRK05301 pyrroloquinoline quin 71.7 24 0.00052 32.9 8.5 40 271-310 142-185 (378)
239 TIGR00683 nanA N-acetylneurami 71.0 78 0.0017 28.3 11.8 111 194-305 32-154 (290)
240 PRK08745 ribulose-phosphate 3- 70.9 67 0.0015 27.6 10.7 48 185-235 19-69 (223)
241 PRK13210 putative L-xylulose 5 70.8 74 0.0016 28.0 14.7 46 188-233 21-70 (284)
242 PRK05588 histidinol-phosphatas 70.4 73 0.0016 27.8 15.8 53 270-322 166-225 (255)
243 cd00950 DHDPS Dihydrodipicolin 69.2 82 0.0018 27.9 11.8 108 121-234 17-132 (284)
244 TIGR01235 pyruv_carbox pyruvat 69.2 1.8E+02 0.0038 31.7 18.8 149 152-310 590-760 (1143)
245 cd01320 ADA Adenosine deaminas 69.1 89 0.0019 28.2 17.2 34 288-323 214-248 (325)
246 TIGR03569 NeuB_NnaB N-acetylne 69.1 83 0.0018 28.8 11.1 104 212-326 73-185 (329)
247 PRK12581 oxaloacetate decarbox 68.6 1.2E+02 0.0025 29.4 20.1 199 107-318 20-243 (468)
248 PRK08444 hypothetical protein; 68.6 50 0.0011 30.5 9.8 102 182-286 83-205 (353)
249 cd00408 DHDPS-like Dihydrodipi 68.6 84 0.0018 27.7 11.6 110 120-234 13-129 (281)
250 cd00959 DeoC 2-deoxyribose-5-p 68.4 71 0.0015 26.8 13.4 100 122-233 14-121 (203)
251 PRK12999 pyruvate carboxylase; 67.5 1.9E+02 0.0042 31.5 19.4 178 123-311 553-763 (1146)
252 TIGR03551 F420_cofH 7,8-dideme 66.8 1.1E+02 0.0023 28.2 11.8 123 182-307 73-221 (343)
253 PRK09875 putative hydrolase; P 66.8 98 0.0021 27.8 11.3 40 275-314 168-210 (292)
254 PF02811 PHP: PHP domain; Int 66.5 6.3 0.00014 31.8 3.1 33 108-143 1-34 (175)
255 cd03174 DRE_TIM_metallolyase D 66.4 88 0.0019 27.2 17.1 180 122-316 16-223 (265)
256 TIGR01108 oadA oxaloacetate de 66.2 1.5E+02 0.0032 29.6 20.5 178 122-310 18-220 (582)
257 PF01081 Aldolase: KDPG and KH 66.1 76 0.0016 26.7 9.5 111 122-258 17-127 (196)
258 cd01293 Bact_CD Bacterial cyto 65.8 1.1E+02 0.0024 28.2 13.4 102 215-320 158-274 (398)
259 PRK08445 hypothetical protein; 65.6 97 0.0021 28.6 11.0 71 182-255 76-157 (348)
260 TIGR00587 nfo apurinic endonuc 65.6 97 0.0021 27.4 14.0 49 186-235 15-69 (274)
261 TIGR00423 radical SAM domain p 65.2 86 0.0019 28.3 10.6 122 182-307 39-187 (309)
262 TIGR03699 mena_SCO4550 menaqui 65.2 82 0.0018 28.8 10.6 124 182-308 75-224 (340)
263 TIGR03586 PseI pseudaminic aci 65.2 54 0.0012 30.0 9.1 42 270-311 147-197 (327)
264 PRK11170 nagA N-acetylglucosam 65.1 91 0.002 29.2 10.9 36 274-311 179-214 (382)
265 cd00954 NAL N-Acetylneuraminic 64.5 1.1E+02 0.0023 27.4 11.8 111 194-305 32-154 (288)
266 TIGR00126 deoC deoxyribose-pho 64.1 91 0.002 26.5 13.5 108 120-236 13-125 (211)
267 PF00701 DHDPS: Dihydrodipicol 64.1 1.1E+02 0.0023 27.3 12.0 109 120-235 17-134 (289)
268 TIGR03326 rubisco_III ribulose 64.0 90 0.0019 29.6 10.5 108 122-235 157-271 (412)
269 PRK02308 uvsE putative UV dama 63.8 1.1E+02 0.0023 27.8 10.7 24 212-235 88-111 (303)
270 PRK06015 keto-hydroxyglutarate 63.6 70 0.0015 27.0 8.8 111 122-258 13-123 (201)
271 COG1456 CdhE CO dehydrogenase/ 63.5 1.2E+02 0.0027 27.9 12.3 90 211-309 142-232 (467)
272 PF05984 Cytomega_UL20A: Cytom 63.4 33 0.00072 24.1 5.6 9 70-78 68-76 (100)
273 cd00952 CHBPH_aldolase Trans-o 63.3 1.2E+02 0.0025 27.5 12.0 112 120-234 24-141 (309)
274 TIGR03234 OH-pyruv-isom hydrox 63.0 1E+02 0.0022 26.7 11.8 41 188-235 19-59 (254)
275 PF02548 Pantoate_transf: Keto 62.7 1.1E+02 0.0024 27.0 11.5 94 179-293 91-186 (261)
276 COG0191 Fba Fructose/tagatose 62.7 1.1E+02 0.0025 27.2 11.2 51 185-238 158-214 (286)
277 PRK07360 FO synthase subunit 2 62.2 81 0.0018 29.4 10.0 72 183-256 95-177 (371)
278 PRK03170 dihydrodipicolinate s 62.1 1.2E+02 0.0025 27.1 11.6 107 122-234 19-133 (292)
279 PRK12331 oxaloacetate decarbox 61.7 1.6E+02 0.0034 28.4 20.7 186 122-318 23-234 (448)
280 TIGR01182 eda Entner-Doudoroff 61.5 85 0.0018 26.6 9.0 111 122-258 17-127 (204)
281 PRK12330 oxaloacetate decarbox 61.4 1.7E+02 0.0036 28.6 20.4 179 122-310 24-228 (499)
282 TIGR03700 mena_SCO4494 putativ 61.2 97 0.0021 28.6 10.3 71 182-255 82-163 (351)
283 PRK04147 N-acetylneuraminate l 61.2 1.2E+02 0.0026 27.0 11.6 111 194-305 35-156 (293)
284 cd00423 Pterin_binding Pterin 60.8 79 0.0017 27.7 9.2 121 182-314 24-173 (258)
285 PRK04208 rbcL ribulose bisopho 60.7 1.2E+02 0.0025 29.4 10.8 108 122-235 173-288 (468)
286 PF05853 DUF849: Prokaryotic p 60.7 1.2E+02 0.0026 26.9 13.4 184 122-314 23-227 (272)
287 PRK08227 autoinducer 2 aldolas 60.5 1.2E+02 0.0026 26.8 10.5 47 186-233 98-145 (264)
288 TIGR00674 dapA dihydrodipicoli 60.4 1.2E+02 0.0027 26.9 11.7 109 121-234 15-130 (285)
289 cd00951 KDGDH 5-dehydro-4-deox 60.4 1.3E+02 0.0027 26.9 12.2 109 120-235 16-132 (289)
290 PRK07114 keto-hydroxyglutarate 59.7 62 0.0013 27.8 8.0 115 122-258 24-138 (222)
291 PF03932 CutC: CutC family; I 59.7 1.1E+02 0.0023 25.9 13.6 64 186-254 76-142 (201)
292 PF00682 HMGL-like: HMGL-like 59.6 1.1E+02 0.0024 26.1 14.9 184 122-317 11-215 (237)
293 PRK08444 hypothetical protein; 59.5 1.3E+02 0.0027 27.9 10.6 131 122-253 80-232 (353)
294 TIGR03820 lys_2_3_AblA lysine- 59.3 1.6E+02 0.0036 27.9 11.4 15 272-286 234-248 (417)
295 PTZ00170 D-ribulose-5-phosphat 59.1 1.2E+02 0.0025 26.1 10.2 49 185-236 22-73 (228)
296 PF07172 GRP: Glycine rich pro 59.1 12 0.00026 27.4 3.1 20 5-24 1-20 (95)
297 PRK09234 fbiC FO synthase; Rev 58.8 81 0.0018 32.9 10.0 71 183-256 561-642 (843)
298 cd00740 MeTr MeTr subgroup of 58.8 1.3E+02 0.0027 26.4 10.5 101 182-291 26-127 (252)
299 PRK08508 biotin synthase; Prov 58.7 1.3E+02 0.0029 26.7 13.3 96 213-309 73-181 (279)
300 CHL00040 rbcL ribulose-1,5-bis 58.6 1E+02 0.0023 29.7 10.0 108 122-235 180-295 (475)
301 COG2089 SpsE Sialic acid synth 58.0 1.5E+02 0.0033 27.0 13.3 77 213-293 88-184 (347)
302 TIGR02967 guan_deamin guanine 57.9 74 0.0016 29.8 9.1 35 283-320 238-272 (401)
303 PRK09722 allulose-6-phosphate 57.6 1.3E+02 0.0027 26.1 11.5 46 185-235 18-66 (229)
304 COG0402 SsnA Cytosine deaminas 57.5 1.7E+02 0.0037 27.6 11.5 39 282-323 246-284 (421)
305 COG1038 PycA Pyruvate carboxyl 57.5 2.2E+02 0.0047 29.6 12.1 149 153-311 596-766 (1149)
306 COG1820 NagA N-acetylglucosami 57.3 78 0.0017 29.5 8.6 54 183-241 74-132 (380)
307 TIGR00221 nagA N-acetylglucosa 57.2 1.5E+02 0.0034 27.6 10.9 36 274-311 181-216 (380)
308 TIGR01859 fruc_bis_ald_ fructo 57.1 1.4E+02 0.0031 26.6 10.8 122 128-249 87-221 (282)
309 cd00377 ICL_PEPM Members of th 56.9 1.3E+02 0.0029 26.1 15.2 19 183-202 85-103 (243)
310 COG0320 LipA Lipoate synthase 56.8 61 0.0013 28.7 7.4 77 153-230 199-282 (306)
311 PRK08195 4-hyroxy-2-oxovalerat 56.4 1.6E+02 0.0035 27.0 13.3 118 131-254 94-216 (337)
312 cd08205 RuBisCO_IV_RLP Ribulos 56.1 1.1E+02 0.0023 28.6 9.6 107 122-237 143-256 (367)
313 PRK13404 dihydropyrimidinase; 55.8 2E+02 0.0043 27.8 12.7 101 213-319 219-323 (477)
314 PRK06256 biotin synthase; Vali 55.7 83 0.0018 28.7 8.8 38 272-309 189-231 (336)
315 PRK07583 cytosine deaminase-li 55.3 1.2E+02 0.0026 28.8 10.2 68 183-253 212-287 (438)
316 cd07943 DRE_TIM_HOA 4-hydroxy- 55.1 1.5E+02 0.0032 26.0 12.3 151 129-285 89-243 (263)
317 cd08213 RuBisCO_large_III Ribu 54.8 1.1E+02 0.0024 29.0 9.4 108 122-235 144-258 (412)
318 PRK12677 xylose isomerase; Pro 54.6 1.9E+02 0.0041 27.1 13.7 47 186-233 35-85 (384)
319 cd00739 DHPS DHPS subgroup of 54.5 1.5E+02 0.0033 26.0 11.9 121 182-314 24-173 (257)
320 COG2876 AroA 3-deoxy-D-arabino 54.0 1.6E+02 0.0034 26.1 9.6 72 176-247 52-128 (286)
321 PF10566 Glyco_hydro_97: Glyco 53.4 92 0.002 27.7 8.2 112 122-235 29-157 (273)
322 PRK04147 N-acetylneuraminate l 53.2 1.7E+02 0.0036 26.2 12.5 110 120-234 19-136 (293)
323 PRK07572 cytosine deaminase; V 53.2 1.6E+02 0.0036 27.8 10.7 77 240-320 192-276 (426)
324 PRK03620 5-dehydro-4-deoxygluc 52.9 1.7E+02 0.0038 26.2 11.7 109 120-235 23-139 (303)
325 PLN02417 dihydrodipicolinate s 52.5 1.7E+02 0.0037 26.0 12.7 25 122-146 19-43 (280)
326 COG0800 Eda 2-keto-3-deoxy-6-p 51.9 1.3E+02 0.0028 25.6 8.5 110 122-257 22-131 (211)
327 PLN02444 HMP-P synthase 51.8 2.5E+02 0.0054 27.7 14.9 63 269-331 360-441 (642)
328 PRK08203 hydroxydechloroatrazi 51.6 2.2E+02 0.0048 27.1 12.2 36 283-321 263-298 (451)
329 PRK13398 3-deoxy-7-phosphohept 51.5 1.7E+02 0.0038 25.8 15.6 22 214-235 77-98 (266)
330 cd08212 RuBisCO_large_I Ribulo 51.3 1.7E+02 0.0036 28.2 10.1 107 122-235 158-272 (450)
331 PRK12738 kbaY tagatose-bisphos 51.2 1.8E+02 0.004 26.0 11.5 109 181-291 27-138 (286)
332 cd06557 KPHMT-like Ketopantoat 51.2 1.2E+02 0.0026 26.7 8.5 93 181-294 89-182 (254)
333 COG0329 DapA Dihydrodipicolina 51.2 1.9E+02 0.004 26.1 12.3 110 120-235 20-137 (299)
334 PLN02858 fructose-bisphosphate 50.9 1.9E+02 0.0041 32.3 11.6 70 185-255 1252-1327(1378)
335 cd08206 RuBisCO_large_I_II_III 50.8 1.8E+02 0.0038 27.7 10.1 108 122-235 145-260 (414)
336 cd08210 RLP_RrRLP Ribulose bis 50.8 1.7E+02 0.0038 27.2 10.0 104 122-234 138-249 (364)
337 TIGR02313 HpaI-NOT-DapA 2,4-di 50.7 1.9E+02 0.004 25.9 11.9 28 120-147 16-43 (294)
338 PRK06886 hypothetical protein; 50.6 57 0.0012 29.9 6.7 34 284-319 207-246 (329)
339 COG2108 Uncharacterized conser 50.3 2E+02 0.0044 26.2 12.0 88 215-305 179-267 (353)
340 PRK07203 putative chlorohydrol 50.1 42 0.00091 32.0 6.1 38 282-322 253-290 (442)
341 PF00016 RuBisCO_large: Ribulo 49.7 2E+02 0.0044 26.1 9.9 109 122-236 27-143 (309)
342 cd00954 NAL N-Acetylneuraminic 49.7 1.9E+02 0.0041 25.7 12.6 109 120-234 16-134 (288)
343 TIGR03249 KdgD 5-dehydro-4-deo 49.4 1.9E+02 0.0042 25.8 11.8 109 120-235 21-137 (296)
344 PLN02417 dihydrodipicolinate s 49.4 1.9E+02 0.0041 25.7 11.7 61 194-254 33-98 (280)
345 PF04273 DUF442: Putative phos 49.3 1.1E+02 0.0024 23.0 8.5 49 188-239 49-97 (110)
346 PRK08185 hypothetical protein; 49.3 1.1E+02 0.0025 27.3 8.2 54 181-235 22-75 (283)
347 COG4939 Major membrane immunog 49.3 53 0.0011 25.3 5.1 16 70-85 49-64 (147)
348 TIGR02631 xylA_Arthro xylose i 49.2 2.3E+02 0.005 26.6 12.9 52 183-235 33-88 (382)
349 PRK07998 gatY putative fructos 49.1 2E+02 0.0043 25.8 11.1 109 181-291 27-138 (283)
350 TIGR03217 4OH_2_O_val_ald 4-hy 49.0 2.1E+02 0.0047 26.2 12.6 153 128-285 90-246 (333)
351 PRK07807 inosine 5-monophospha 48.9 1.8E+02 0.0039 28.2 10.1 98 128-234 229-336 (479)
352 TIGR00683 nanA N-acetylneurami 48.1 2E+02 0.0044 25.6 12.5 109 121-234 17-134 (290)
353 PRK07360 FO synthase subunit 2 47.7 2.4E+02 0.0051 26.3 11.3 129 122-253 91-244 (371)
354 PRK08185 hypothetical protein; 47.6 2.1E+02 0.0045 25.6 11.9 18 272-289 151-168 (283)
355 PRK09195 gatY tagatose-bisphos 47.6 2.1E+02 0.0045 25.6 11.0 109 181-291 27-138 (284)
356 TIGR01361 DAHP_synth_Bsub phos 47.5 1.7E+02 0.0037 25.8 9.0 43 271-313 147-200 (260)
357 PRK06552 keto-hydroxyglutarate 47.4 1.4E+02 0.003 25.5 8.2 104 122-244 22-125 (213)
358 TIGR01163 rpe ribulose-phospha 47.3 1.6E+02 0.0036 24.4 10.8 93 185-288 14-109 (210)
359 PF01116 F_bP_aldolase: Fructo 47.3 2.1E+02 0.0045 25.6 9.7 22 213-234 26-47 (287)
360 PRK06852 aldolase; Validated 46.5 2.3E+02 0.0049 25.7 12.6 49 186-235 119-174 (304)
361 cd07937 DRE_TIM_PC_TC_5S Pyruv 46.4 2.1E+02 0.0046 25.3 20.8 177 122-310 18-220 (275)
362 PRK09234 fbiC FO synthase; Rev 45.9 1.9E+02 0.0041 30.3 10.3 131 122-253 557-709 (843)
363 cd08148 RuBisCO_large Ribulose 45.8 2E+02 0.0043 26.8 9.5 107 122-235 140-253 (366)
364 TIGR01521 FruBisAldo_II_B fruc 45.8 1.2E+02 0.0025 28.0 7.9 22 213-234 25-46 (347)
365 cd08209 RLP_DK-MTP-1-P-enolase 45.8 1.8E+02 0.0039 27.4 9.2 107 122-235 137-250 (391)
366 PRK05370 argininosuccinate syn 45.8 2.8E+02 0.0061 26.6 11.4 94 194-293 33-131 (447)
367 cd00405 PRAI Phosphoribosylant 45.8 1.3E+02 0.0029 25.1 7.9 33 194-226 17-49 (203)
368 cd01312 Met_dep_hydrolase_D Me 45.5 25 0.00053 32.9 3.7 37 283-322 230-266 (381)
369 PRK09856 fructoselysine 3-epim 45.4 1.5E+02 0.0033 25.9 8.6 20 216-235 130-149 (275)
370 PRK09250 fructose-bisphosphate 45.2 95 0.0021 28.6 7.2 50 185-235 149-199 (348)
371 PRK11858 aksA trans-homoaconit 44.3 2.7E+02 0.0058 26.0 10.3 109 128-242 78-202 (378)
372 PRK12737 gatY tagatose-bisphos 43.9 2.4E+02 0.0052 25.3 11.3 109 181-291 27-138 (284)
373 PRK09196 fructose-1,6-bisphosp 43.5 1.4E+02 0.0031 27.5 8.1 22 213-234 27-48 (347)
374 cd07938 DRE_TIM_HMGL 3-hydroxy 43.5 1.9E+02 0.0042 25.6 8.9 54 185-241 151-206 (274)
375 PRK14041 oxaloacetate decarbox 43.5 3.1E+02 0.0068 26.5 21.2 187 122-318 22-233 (467)
376 PTZ00372 endonuclease 4-like p 43.3 2.5E+02 0.0054 26.7 9.8 104 216-319 142-280 (413)
377 COG1816 Add Adenosine deaminas 43.3 2.7E+02 0.0059 25.7 13.4 29 107-142 13-41 (345)
378 smart00481 POLIIIAc DNA polyme 43.2 33 0.00072 22.8 3.1 32 109-143 1-33 (67)
379 COG0269 SgbH 3-hexulose-6-phos 43.0 2.1E+02 0.0046 24.4 11.7 59 188-253 73-131 (217)
380 PRK09282 pyruvate carboxylase 43.0 3.6E+02 0.0078 27.0 20.2 180 122-311 23-226 (592)
381 TIGR03314 Se_ssnA putative sel 42.9 23 0.0005 33.8 3.1 37 283-322 253-289 (441)
382 PRK05927 hypothetical protein; 42.6 2.1E+02 0.0044 26.5 9.2 70 182-254 79-159 (350)
383 TIGR01302 IMP_dehydrog inosine 42.6 2.1E+02 0.0045 27.5 9.5 105 129-242 227-343 (450)
384 PF00764 Arginosuc_synth: Argi 42.4 2E+02 0.0044 27.0 9.0 94 194-293 19-114 (388)
385 PF04748 Polysacc_deac_2: Dive 42.4 2.1E+02 0.0047 24.3 9.5 111 196-311 89-206 (213)
386 PRK09228 guanine deaminase; Pr 42.4 2.1E+02 0.0045 27.2 9.5 37 283-322 263-299 (433)
387 cd01313 Met_dep_hydrolase_E Me 42.1 32 0.0007 32.5 3.9 38 282-322 254-291 (418)
388 cd01303 GDEase Guanine deamina 41.8 29 0.00063 33.0 3.6 36 283-321 260-295 (429)
389 COG0075 Serine-pyruvate aminot 41.7 90 0.002 29.2 6.6 78 187-293 94-171 (383)
390 COG0413 PanB Ketopantoate hydr 41.7 2.5E+02 0.0054 24.8 10.4 92 180-292 91-184 (268)
391 PLN02591 tryptophan synthase 41.6 2.4E+02 0.0053 24.7 12.8 17 270-286 118-134 (250)
392 cd07945 DRE_TIM_CMS Leptospira 41.5 2.6E+02 0.0056 24.9 13.1 124 186-316 78-224 (280)
393 PRK06801 hypothetical protein; 41.4 2.6E+02 0.0057 25.0 12.0 104 181-286 27-131 (286)
394 PRK06801 hypothetical protein; 41.3 1.6E+02 0.0034 26.4 7.9 24 212-235 26-49 (286)
395 TIGR01858 tag_bisphos_ald clas 41.3 2.6E+02 0.0057 25.0 11.4 109 181-291 25-136 (282)
396 PRK00311 panB 3-methyl-2-oxobu 41.0 2.1E+02 0.0045 25.3 8.5 92 182-294 93-185 (264)
397 PRK05692 hydroxymethylglutaryl 41.0 2.7E+02 0.0058 24.9 12.7 52 186-241 159-212 (287)
398 PRK06846 putative deaminase; V 40.7 3.1E+02 0.0068 25.7 11.5 106 219-327 179-299 (410)
399 cd00958 DhnA Class I fructose- 40.4 2.3E+02 0.0051 24.1 14.0 180 122-315 18-216 (235)
400 PRK07213 chlorohydrolase; Prov 40.2 45 0.00098 31.0 4.6 45 276-323 218-263 (375)
401 TIGR03822 AblA_like_2 lysine-2 40.1 2.9E+02 0.0063 25.1 12.2 39 271-309 215-260 (321)
402 PRK08445 hypothetical protein; 40.0 3E+02 0.0066 25.3 10.1 123 122-247 73-219 (348)
403 PF08057 Ery_res_leader2: Eryt 40.0 6.6 0.00014 17.2 -0.5 9 1-9 1-9 (14)
404 COG0191 Fba Fructose/tagatose 39.8 2.8E+02 0.006 24.8 11.5 108 181-290 27-136 (286)
405 TIGR03470 HpnH hopanoid biosyn 39.7 2.9E+02 0.0063 25.0 10.8 39 271-309 150-193 (318)
406 cd01305 archeal_chlorohydrolas 39.2 44 0.00096 29.2 4.1 35 283-321 164-198 (263)
407 KOG2550 IMP dehydrogenase/GMP 38.9 2.1E+02 0.0045 27.1 8.3 97 129-234 254-360 (503)
408 PRK05926 hypothetical protein; 38.9 3.3E+02 0.0071 25.4 11.6 132 121-254 98-251 (370)
409 PF01964 ThiC: ThiC family; I 38.8 3.4E+02 0.0074 25.6 11.8 101 130-234 81-221 (420)
410 KOG2550 IMP dehydrogenase/GMP 38.4 3.5E+02 0.0077 25.6 10.6 18 96-113 30-47 (503)
411 PF14871 GHL6: Hypothetical gl 38.3 1.4E+02 0.003 23.3 6.3 25 211-235 40-64 (132)
412 PRK08195 4-hyroxy-2-oxovalerat 37.7 3.3E+02 0.0071 25.0 20.0 178 122-316 22-222 (337)
413 TIGR02022 hutF formiminoglutam 37.7 34 0.00074 32.8 3.4 38 282-322 263-300 (455)
414 PF03102 NeuB: NeuB family; I 37.6 1.5E+02 0.0032 25.8 7.0 105 212-327 53-164 (241)
415 PLN02389 biotin synthase 37.4 3.5E+02 0.0076 25.3 9.9 114 180-313 117-232 (379)
416 PRK09549 mtnW 2,3-diketo-5-met 37.0 3.3E+02 0.0072 25.8 9.6 107 122-235 147-260 (407)
417 TIGR03581 EF_0839 conserved hy 36.9 2.7E+02 0.0059 23.9 8.2 70 190-292 142-211 (236)
418 cd06556 ICL_KPHMT Members of t 36.8 2.8E+02 0.0061 24.1 11.9 106 182-311 89-195 (240)
419 PRK15493 5-methylthioadenosine 36.6 30 0.00064 33.0 2.8 37 283-322 246-282 (435)
420 cd07947 DRE_TIM_Re_CS Clostrid 36.5 3.1E+02 0.0067 24.4 11.4 125 185-310 77-231 (279)
421 TIGR01303 IMP_DH_rel_1 IMP deh 36.4 3.8E+02 0.0083 26.0 10.2 99 127-234 226-334 (475)
422 cd01317 DHOase_IIa Dihydroorot 36.4 3.5E+02 0.0076 25.0 10.2 97 215-320 172-272 (374)
423 PRK07084 fructose-bisphosphate 36.1 2.2E+02 0.0047 26.0 8.0 15 298-312 130-144 (321)
424 PRK07535 methyltetrahydrofolat 36.0 3E+02 0.0066 24.2 13.8 19 217-235 105-124 (261)
425 PRK13399 fructose-1,6-bisphosp 35.6 2.3E+02 0.0049 26.3 8.1 16 298-313 127-142 (347)
426 COG0135 TrpF Phosphoribosylant 35.6 2.8E+02 0.006 23.6 9.2 40 186-226 13-52 (208)
427 COG1038 PycA Pyruvate carboxyl 35.6 4.3E+02 0.0093 27.6 10.3 106 131-241 636-750 (1149)
428 PRK09229 N-formimino-L-glutama 35.6 41 0.0009 32.2 3.6 37 282-321 263-299 (456)
429 PRK07094 biotin synthase; Prov 35.5 3.3E+02 0.0072 24.5 9.9 121 183-309 74-210 (323)
430 cd08207 RLP_NonPhot Ribulose b 35.3 3E+02 0.0065 26.1 9.1 105 122-235 156-267 (406)
431 COG0821 gcpE 1-hydroxy-2-methy 35.2 3.6E+02 0.0078 24.8 10.5 51 194-248 93-143 (361)
432 cd00019 AP2Ec AP endonuclease 35.2 3.1E+02 0.0067 24.0 13.9 21 215-235 123-143 (279)
433 TIGR03332 salvage_mtnW 2,3-dik 34.9 4E+02 0.0087 25.2 9.9 107 122-235 152-265 (407)
434 PRK06806 fructose-bisphosphate 34.8 3.3E+02 0.0072 24.3 11.9 128 181-310 27-169 (281)
435 TIGR02320 PEP_mutase phosphoen 34.6 3.4E+02 0.0074 24.3 15.4 17 96-112 5-21 (285)
436 TIGR02082 metH 5-methyltetrahy 34.5 5.4E+02 0.012 28.3 11.7 117 186-313 372-509 (1178)
437 COG3142 CutC Uncharacterized p 34.4 3.1E+02 0.0066 23.7 15.0 101 194-300 84-188 (241)
438 COG0422 ThiC Thiamine biosynth 34.3 4E+02 0.0086 25.0 14.5 20 130-149 83-102 (432)
439 PRK08418 chlorohydrolase; Prov 34.2 51 0.0011 31.1 3.9 38 283-323 253-290 (408)
440 PRK12858 tagatose 1,6-diphosph 34.1 3.8E+02 0.0082 24.7 12.3 46 188-234 112-162 (340)
441 TIGR00238 KamA family protein. 34.0 3.7E+02 0.008 24.6 12.1 37 272-308 239-282 (331)
442 PF10509 GalKase_gal_bdg: Gala 33.9 24 0.00052 22.6 1.1 34 73-115 15-48 (52)
443 PRK06740 histidinol-phosphatas 33.5 3.8E+02 0.0082 24.5 18.1 52 271-322 240-299 (331)
444 KOG4549 Magnesium-dependent ph 33.1 1E+02 0.0022 23.9 4.6 56 93-149 7-71 (144)
445 PLN02334 ribulose-phosphate 3- 33.0 3.1E+02 0.0067 23.4 10.8 47 185-235 23-72 (229)
446 PRK11613 folP dihydropteroate 32.8 3.6E+02 0.0079 24.1 12.5 120 182-314 38-186 (282)
447 cd07948 DRE_TIM_HCS Saccharomy 32.4 3.5E+02 0.0076 23.8 18.2 178 122-315 19-216 (262)
448 cd03174 DRE_TIM_metallolyase D 32.3 3.3E+02 0.0072 23.5 12.5 15 271-285 147-161 (265)
449 PRK05926 hypothetical protein; 32.0 4.3E+02 0.0092 24.7 9.9 59 195-255 113-182 (370)
450 COG3065 Slp Starvation-inducib 31.8 2.6E+02 0.0057 23.1 6.9 12 99-110 94-107 (191)
451 TIGR03700 mena_SCO4494 putativ 31.4 4.2E+02 0.009 24.4 11.3 131 122-253 79-231 (351)
452 PRK13753 dihydropteroate synth 31.2 3.8E+02 0.0083 23.9 9.1 97 182-291 25-127 (279)
453 TIGR01362 KDO8P_synth 3-deoxy- 31.2 3.7E+02 0.008 23.7 12.8 32 214-245 59-90 (258)
454 PRK09997 hydroxypyruvate isome 31.1 3.5E+02 0.0076 23.4 12.4 40 187-234 20-59 (258)
455 PRK07226 fructose-bisphosphate 31.0 3.7E+02 0.008 23.6 13.7 106 123-234 37-145 (267)
456 COG1168 MalY Bifunctional PLP- 30.7 1.8E+02 0.0039 27.1 6.6 48 185-233 147-196 (388)
457 PF00248 Aldo_ket_red: Aldo/ke 30.6 3.6E+02 0.0079 23.4 12.8 115 121-235 13-136 (283)
458 PRK06687 chlorohydrolase; Vali 29.8 50 0.0011 31.2 3.1 36 283-321 245-280 (419)
459 PF13378 MR_MLE_C: Enolase C-t 29.7 1E+02 0.0023 22.7 4.3 48 185-236 7-54 (111)
460 PRK08204 hypothetical protein; 29.6 59 0.0013 31.0 3.6 36 282-320 242-277 (449)
461 PRK13758 anaerobic sulfatase-m 29.6 4.5E+02 0.0097 24.2 9.6 40 270-309 144-187 (370)
462 PF07071 DUF1341: Protein of u 29.5 1.8E+02 0.0039 24.6 5.8 70 189-291 141-210 (218)
463 PRK09236 dihydroorotase; Revie 29.5 3.9E+02 0.0085 25.4 9.2 92 216-318 217-314 (444)
464 PRK08323 phenylhydantoinase; V 29.4 5E+02 0.011 24.6 12.9 26 295-320 292-319 (459)
465 PRK09490 metH B12-dependent me 29.3 7.5E+02 0.016 27.3 11.8 96 186-292 388-489 (1229)
466 PRK07228 N-ethylammeline chlor 29.1 49 0.0011 31.5 2.9 35 283-320 248-282 (445)
467 PRK08508 biotin synthase; Prov 29.0 4.1E+02 0.0088 23.5 13.0 125 122-254 40-181 (279)
468 PRK09356 imidazolonepropionase 28.7 4.8E+02 0.01 24.2 10.9 30 288-320 262-291 (406)
469 KOG2949 Ketopantoate hydroxyme 28.4 2.1E+02 0.0045 24.7 6.0 55 269-323 116-172 (306)
470 COG0646 MetH Methionine syntha 28.3 4.5E+02 0.0097 23.8 12.2 115 194-319 154-302 (311)
471 cd06660 Aldo_ket_red Aldo-keto 28.2 4E+02 0.0087 23.2 15.3 107 124-230 28-142 (285)
472 PRK08123 histidinol-phosphatas 28.2 4.1E+02 0.0089 23.3 17.6 53 270-322 197-257 (270)
473 PRK12857 fructose-1,6-bisphosp 28.1 4.4E+02 0.0095 23.6 11.5 109 181-291 27-138 (284)
474 COG1679 Predicted aconitase [G 28.1 5E+02 0.011 24.3 9.6 108 210-318 225-359 (403)
475 PF10055 DUF2292: Uncharacteri 27.9 76 0.0017 18.9 2.5 16 71-86 18-33 (38)
476 PRK05660 HemN family oxidoredu 27.7 3.9E+02 0.0084 24.9 8.6 40 270-309 143-189 (378)
477 PRK12393 amidohydrolase; Provi 27.3 62 0.0013 31.0 3.3 37 283-322 267-303 (457)
478 COG1850 RbcL Ribulose 1,5-bisp 27.2 5.4E+02 0.012 24.3 10.4 107 122-235 168-281 (429)
479 PRK03906 mannonate dehydratase 26.9 1.8E+02 0.0039 27.3 6.1 24 215-238 214-237 (385)
480 PRK12569 hypothetical protein; 26.9 2.8E+02 0.006 24.3 6.7 23 213-235 45-67 (245)
481 PRK09197 fructose-bisphosphate 26.7 5.2E+02 0.011 24.0 11.8 125 128-253 118-273 (350)
482 PRK07575 dihydroorotase; Provi 26.7 3.8E+02 0.0082 25.5 8.5 94 215-319 212-309 (438)
483 TIGR01949 AroFGH_arch predicte 26.7 4.3E+02 0.0093 23.0 14.0 107 123-235 34-143 (258)
484 COG0502 BioB Biotin synthase a 26.6 2.7E+02 0.0058 25.6 6.9 110 194-307 98-221 (335)
485 TIGR02026 BchE magnesium-proto 26.6 6E+02 0.013 24.7 12.2 124 181-309 224-368 (497)
486 PF01212 Beta_elim_lyase: Beta 26.6 1.9E+02 0.0042 25.8 6.1 50 185-234 108-164 (290)
487 PLN02727 NAD kinase 26.6 8.1E+02 0.017 26.1 11.9 50 187-238 301-351 (986)
488 cd08208 RLP_Photo Ribulose bis 26.4 5.7E+02 0.012 24.4 9.8 105 122-235 173-284 (424)
489 PRK09284 thiamine biosynthesis 26.4 6.4E+02 0.014 24.9 16.5 20 130-149 237-256 (607)
490 PF07745 Glyco_hydro_53: Glyco 26.0 1.7E+02 0.0038 26.8 5.7 49 187-235 28-80 (332)
491 PF11068 YlqD: YlqD protein; 25.8 63 0.0014 25.2 2.5 15 70-84 117-131 (131)
492 PRK05985 cytosine deaminase; P 25.8 3.1E+02 0.0068 25.4 7.7 56 272-328 222-285 (391)
493 PRK06038 N-ethylammeline chlor 25.6 61 0.0013 30.8 2.9 37 282-321 238-274 (430)
494 PRK08393 N-ethylammeline chlor 25.5 56 0.0012 30.9 2.6 37 283-322 238-274 (424)
495 PRK05927 hypothetical protein; 25.5 5.4E+02 0.012 23.8 10.5 130 122-252 76-227 (350)
496 TIGR00262 trpA tryptophan synt 25.3 4.6E+02 0.01 22.9 14.6 53 227-286 86-143 (256)
497 COG1082 IolE Sugar phosphate i 25.1 4.4E+02 0.0096 22.6 11.5 93 214-322 83-184 (274)
498 PRK00979 tetrahydromethanopter 25.1 5.2E+02 0.011 23.4 13.6 68 213-285 80-148 (308)
499 PRK04165 acetyl-CoA decarbonyl 24.9 6.3E+02 0.014 24.3 13.4 104 197-314 128-233 (450)
500 PF02679 ComA: (2R)-phospho-3- 24.9 4.7E+02 0.01 22.8 8.5 44 190-236 91-134 (244)
No 1
>PLN02942 dihydropyrimidinase
Probab=100.00 E-value=1.3e-37 Score=297.62 Aligned_cols=271 Identities=82% Similarity=1.278 Sum_probs=227.4
Q ss_pred CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHH
Q 020079 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (331)
Q Consensus 52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~ 131 (331)
+.+++|+|++|++++....++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+.++..+...+++++++.
T Consensus 4 ~~~lli~~~~v~~~~~~~~~~i~I~~g~I~~i~~~~~~~~~~~~iD~~g~~v~PG~ID~H~H~~~~~~~~~~~ed~~s~s 83 (486)
T PLN02942 4 STKILIKGGTVVNAHHQELADVYVEDGIIVAVAPNLKVPDDVRVIDATGKFVMPGGIDPHTHLAMPFMGTETIDDFFSGQ 83 (486)
T ss_pred CCcEEEECcEEEcCCCCeEeEEEEECCEEEEEcCCCCCCCCCeEEECCCCEEecCEeeeeeccCcccCCCcccchHHHHH
Confidence 35689999999987766788999999999999976432335689999999999999999999998755567789999999
Q ss_pred HHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCc
Q 020079 132 AAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM 211 (331)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~ 211 (331)
++++++||||+.||..+......+.++.......+..+++.++.+.........+++.++.++.|+..+++++++++...
T Consensus 84 ~aAl~gGvTTv~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~l~~~~gv~~~k~~~~~~~~~~ 163 (486)
T PLN02942 84 AAALAGGTTMHIDFVIPVNGNLLAGYEAYEKKAEKSCMDYGFHMAITKWDDTVSRDMETLVKEKGINSFKFFMAYKGSLM 163 (486)
T ss_pred HHHHcCCCeEEEeCCCCCCCCHHHHHHHHHHHHhhcCCCEEEEEEecCCcHhHHHHHHHHHHhCCCceEEEEEecCCCCC
Confidence 99999999999999755544445666665555555667776665444333334566777764568888999998877677
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeC
Q 020079 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (331)
Q Consensus 212 ~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~ 291 (331)
++++.+.+.++.++++|.++++|+|+.++.....+.+...|..++..+...+|...|..++.+.+.++...|.++|++|+
T Consensus 164 ~~~~~l~~~~~~a~~~~~~v~~HaE~~~~~~~~~~~~~~~G~~~~~~~~~~rP~~~E~~av~~~~~la~~~g~~~~i~H~ 243 (486)
T PLN02942 164 VTDELLLEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLYVVHV 243 (486)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChhhhhccCCchHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 78999999999999999999999999888877777778889888888888899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 292 MSMDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 292 ~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
++.++++.++++|++|++|++++||||+.+.
T Consensus 244 s~~~~~e~i~~~k~~G~~Vt~e~~ph~L~l~ 274 (486)
T PLN02942 244 MSIDAMEEIARARKSGQRVIGEPVVSGLVLD 274 (486)
T ss_pred CCHHHHHHHHHHHHCCCcEEEEECchhheeC
Confidence 9999999999999999999999999999865
No 2
>PLN02795 allantoinase
Probab=100.00 E-value=7.9e-36 Score=285.48 Aligned_cols=276 Identities=25% Similarity=0.307 Sum_probs=215.8
Q ss_pred CCCCCCCCCCccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCC---CCceEEeCCCCeeecccccccccccCCCC
Q 020079 43 GGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG---DDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (331)
Q Consensus 43 ~~~~~~~~~~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~---~~~~~id~~g~~v~PG~ID~H~H~~~~~~ 119 (331)
.+.+++..++.+++|+|++|++++....++|+|+||+|++|++....+ ++.++||++|++|+|||||+|+|+..+
T Consensus 34 ~~~~~~~~~~~~~vi~~~~vv~~~~~~~~~v~i~dG~I~~I~~~~~~~~~~~~~~~ida~G~~v~PG~ID~H~H~~~~-- 111 (505)
T PLN02795 34 GRDRCSLLPWPHFVLYSKRVVTPAGVIPGAVEVEGGRIVSVTKEEEAPKSQKKPHVLDYGNAVVMPGLIDVHVHLNEP-- 111 (505)
T ss_pred cccccccccccceEEECCEEEECCCeEEEEEEEECCEEEEecCccccccccCCCEEEECCCCEEecCEEecccCcCCC--
Confidence 456677777789999999999987777899999999999999754321 246899999999999999999999876
Q ss_pred CCCChhhHHHHHHHHHhCCceEEecCcC-CCC-CcHHHHHHHHHHHhc-cceeeccccccccCCChhhHHHHHHHHHHhC
Q 020079 120 GSETIDDFFSGQAAALAGGTTMHIDFVI-PIN-GSLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKG 196 (331)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~-~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 196 (331)
+...++++..+.+.++.+||||++||.. ..+ ....+.++...+... ...+++.++.+......+..+++.++. +.|
T Consensus 112 ~~~~~e~~~~~~~aa~~gGvTtv~dmp~~~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~l~~~~-~~G 190 (505)
T PLN02795 112 GRTEWEGFPTGTKAAAAGGITTLVDMPLNSFPSTTSVETLELKIEAAKGKLYVDVGFWGGLVPENAHNASVLEELL-DAG 190 (505)
T ss_pred CccchhHHHHHHHHHHcCCcEEEECCCCCCCCCCChHHHHHHHHHHhccCceeeeeceecccCcchhHHHHHHHHH-HCC
Confidence 4456789999999999999999999973 222 244555555554443 356676665544332334456666665 678
Q ss_pred CCeEEEEEecCCCC---cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHH
Q 020079 197 INSFKFFMAYKGSF---MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273 (331)
Q Consensus 197 ~~~ik~~~~~~~~~---~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~ 273 (331)
+.++|.|+.+++.. ..+++.+.++++.++++|+++++|+|+.+...... . ...|......+...+|...|..++.
T Consensus 191 ~~g~k~f~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~-~-~~~~~~~~~~~~~~rP~~aE~~ai~ 268 (505)
T PLN02795 191 ALGLKSFMCPSGINDFPMTTATHIKAALPVLAKYGRPLLVHAEVVSPVESDS-R-LDADPRSYSTYLKSRPPSWEQEAIR 268 (505)
T ss_pred CcEEEEEecccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecCChhHhhhhh-h-hhcCCcChhHhcccCCHHHHHHHHH
Confidence 88899998765433 56789999999999999999999999877553221 1 1233334445566789999999999
Q ss_pred HHHHHHHhc-------CCCEEEEeCCCH-HHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079 274 RAIRLAEFV-------NTPLYVVHVMSM-DAMEEIAKARKAGPNFLNTTIPLCDSCSN 323 (331)
Q Consensus 274 ~~~~l~~~~-------g~~~~i~H~~~~-~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~ 323 (331)
+.+.++... |+++|++|+++. ++++.++++|++|++|+++|||||+.+..
T Consensus 269 ~~~~la~~~~~~~~~~g~~lhi~HiSt~~~~~e~i~~ak~~G~~Vt~Ev~ph~L~l~~ 326 (505)
T PLN02795 269 QLLEVAKDTRPGGVAEGAHVHIVHLSDAESSLELIKEAKAKGDSVTVETCPHYLAFSA 326 (505)
T ss_pred HHHHHHHHhhhcccCCCCCEEEEECCChHHHHHHHHHHHHCCCcEEEEeChhhhcccH
Confidence 999999999 999999999999 99999999999999999999999997653
No 3
>KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.1e-36 Score=269.62 Aligned_cols=259 Identities=61% Similarity=0.974 Sum_probs=243.3
Q ss_pred ccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHH
Q 020079 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132 (331)
Q Consensus 53 ~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~ 132 (331)
..++|+|++|+..+.....||+++||.|.+|+++...+.+.++||+.|++|+||.||.|+|+.+++.|....++|+++.+
T Consensus 14 ~rllikgg~vvN~d~~~~aDV~vedGiI~~vg~~l~ipgg~~~ida~g~~ViPGgID~Hthlq~p~~G~ts~DdF~~GTk 93 (522)
T KOG2584|consen 14 NRLLIKGGRVVNDDQSFKADVYVEDGIIKEVGENLIIPGGVKVIDATGKMVIPGGIDPHTHLQMPFMGMTSVDDFFQGTK 93 (522)
T ss_pred cceeeeCCEEEccCCceeeeEEeccCEEEEecccEEcCCCceEEecCCcEEecCccCccceeccccCCccchhhhhcccH
Confidence 45899999999988889999999999999999998878889999999999999999999999999999999999999999
Q ss_pred HHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCC
Q 020079 133 AALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSF 210 (331)
Q Consensus 133 ~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~ 210 (331)
+++++|+|++.|+..+... +..+.++.+++.+. ....||+++++++.+.+...+++.-+.++.|++.|++|+.+...+
T Consensus 94 AAlaGGtTmiID~vlp~~~~slv~afe~wr~~Ad~k~cCDyglhv~It~W~~~v~eem~~l~~ekGvnsF~~fmayk~~~ 173 (522)
T KOG2584|consen 94 AALAGGTTMIIDFVLPDKGTSLVEAFEKWREWADPKVCCDYGLHVGITWWSPSVKEEMEILVKEKGVNSFKFFMAYKDLY 173 (522)
T ss_pred HHhcCCceEEEEEecCCCCchHHHHHHHHHhhcCCceeeeeeeeEeeeecCcchHHHHHHHhhhcCcceEEeeeeecccc
Confidence 9999999999999877764 78889999988875 589999999999999888888998888789999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEe
Q 020079 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290 (331)
Q Consensus 211 ~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H 290 (331)
++++++|.+.++.+++.|....+|+|+.+.+++.++++.++|..+|++|...+|+..|.+++.+.+.++...++++.++|
T Consensus 174 ~v~d~~lye~l~~~~~lgala~vHAEngd~iae~q~~~l~~gitgPEgh~lSRPee~EaEA~~rai~ia~~~ncPlyvvh 253 (522)
T KOG2584|consen 174 MVRDSELYEALKVCAELGALAMVHAENGDAIAEGQQRLLELGITGPEGHELSRPEELEAEATNRAITIARQANCPLYVVH 253 (522)
T ss_pred ccCHHHHHHHHHHHhhcchhheehhhcchhhhhhhhHHHHcCCcCcccccccCchhhhHHHHHHHHHHHHhcCCCcceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHcCCCEE
Q 020079 291 VMSMDAMEEIAKARKAGPNFL 311 (331)
Q Consensus 291 ~~~~~~~~~i~~~~~~Gi~v~ 311 (331)
+.+.++.+.|.++|++|--|.
T Consensus 254 Vmsksaa~~Ia~aRk~g~~v~ 274 (522)
T KOG2584|consen 254 VMSKSAADAIALARKKGRVVF 274 (522)
T ss_pred EeehhHHHHHHHHHhcCceee
Confidence 999888899999999886543
No 4
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=100.00 E-value=1.6e-35 Score=282.44 Aligned_cols=268 Identities=54% Similarity=0.800 Sum_probs=217.1
Q ss_pred EEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHHH
Q 020079 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAA 134 (331)
Q Consensus 55 ~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~ 134 (331)
++|+|++|++++...+++|+|+||+|++|++....+++.++||++|++|+|||||+|+|+..+..+..++++++.+.+.+
T Consensus 1 ~li~n~~vv~~~~~~~~~V~I~dg~I~~Ig~~~~~~~~~~vIDa~G~~vlPGlID~H~H~~~~~~~~~~~e~~~~~s~~a 80 (454)
T TIGR02033 1 KLIRGGTVVNADDVFQADVLIEGGKIVAVGRNLSPPDAVEEIDATGKYVMPGGIDVHTHLEMPFGGTVTADDFFTGTKAA 80 (454)
T ss_pred CEEECcEEEcCCCceEEEEEEECCEEEEecCCCCCCCCCcEEECCCCEEecCEecceeccCcccCCCCCcchHHHHHHHH
Confidence 47999999998777789999999999999975422334589999999999999999999987644456789999999999
Q ss_pred HhCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcC
Q 020079 135 LAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212 (331)
Q Consensus 135 l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~ 212 (331)
+++||||++||....+. ...+.++....... ...+++.++........+..++..+...+.|+..+|++++++..+.+
T Consensus 81 ~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~ 160 (454)
T TIGR02033 81 AAGGTTTIIDFALPHKGESLTEALETWHEKAEGKSVIDYGFHMMITHWNDEVLEEHIPELVEEGITSFKVFMAYKNLLMV 160 (454)
T ss_pred HhCCCCEEEeCcCCCCCCCHHHHHHHHHHHhccCceEEEEEEecccCCcHHHHHHHHHHHHhcCCcEEEEEeecCCCCCC
Confidence 99999999999755433 45555555544432 24555555443322333434453333335788899999988777888
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCC
Q 020079 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292 (331)
Q Consensus 213 ~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~ 292 (331)
+++.++++++.|+++|+++++|+|+..+.....+++.+.|......|...+|...|..++.+.+.++...+.++|++|++
T Consensus 161 ~~~~l~~~~~~a~~~~~~v~~H~E~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~e~~~v~~~~~~~~~~~~~~~i~H~s 240 (454)
T TIGR02033 161 DDEELFEILKRAKELGALLQVHAENGDVIAELQARLLAQGKTGPEYHALSRPPESEAEAVARAIALAALANAPLYVVHVS 240 (454)
T ss_pred CHHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHcCCCChhHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 99999999999999999999999988877777777788898888888888999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 293 SMDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 293 ~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
+..+++.++.+|+.|++|++++||||+.+.
T Consensus 241 ~~~~~~~i~~~~~~g~~vt~e~~p~~l~~~ 270 (454)
T TIGR02033 241 TASAVDEIAEAREKGQPVYGETCPQYLLLD 270 (454)
T ss_pred CHHHHHHHHHHHHCCCeEEEEcCchheeec
Confidence 999999999999999999999999998543
No 5
>PRK13404 dihydropyrimidinase; Provisional
Probab=100.00 E-value=1.9e-35 Score=281.75 Aligned_cols=268 Identities=37% Similarity=0.610 Sum_probs=219.1
Q ss_pred CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCC-CCCCChhhHHHH
Q 020079 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF-MGSETIDDFFSG 130 (331)
Q Consensus 52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~-~~~~~~~~~~~~ 130 (331)
+.+++|+|++|+++.....++|+|+||+|++|++.. +.+.++||++|++|+|||||+|+|+..+. .+....+++...
T Consensus 3 ~~d~~i~~~~v~~~~~~~~~~i~I~dg~I~~i~~~~--~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~e~~~~~ 80 (477)
T PRK13404 3 AFDLVIRGGTVVTATDTFQADIGIRGGRIAALGEGL--GPGAREIDATGRLVLPGGVDSHCHIDQPSGDGIMMADDFYTG 80 (477)
T ss_pred CCcEEEECCEEEcCCCceEEEEEEECCEEEEecCCC--CCCCeEEECCCCEEecCEEEeEEcCCccccCCccccchHHHH
Confidence 357899999999977666789999999999998753 23568999999999999999999997641 134457889999
Q ss_pred HHHHHhCCceEEecCcCCCC-CcHHHHHHHHHHHh-ccceeeccccccccCCChhh-HHHHHHHHHHhCCCeEEEEEecC
Q 020079 131 QAAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVV-SDEMEVMVKEKGINSFKFFMAYK 207 (331)
Q Consensus 131 ~~~~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~ik~~~~~~ 207 (331)
.+.++.+||||++|+....+ ....+.++..+... ....++++++.......++. .+++.++. +.|+..||+|+++.
T Consensus 81 s~aa~~gGvTtv~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~v~~l~-~~G~~~iKi~~~~~ 159 (477)
T PRK13404 81 TVSAAFGGTTTVIPFAAQHRGQSLREAVEDYHRRAAGKAVIDYAFHLIVADPTEEVLTEELPALI-AQGYTSFKVFMTYD 159 (477)
T ss_pred HHHHHcCCccEEEEccCCCCCCCHHHHHHHHHHHhccCcEEEEEEEEEecCCChhhHHHHHHHHH-HcCCCEEEEEecCC
Confidence 99999999999999864322 24556665554443 33567776665544333333 35677777 68999999997643
Q ss_pred CCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEE
Q 020079 208 GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287 (331)
Q Consensus 208 ~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~ 287 (331)
+ ...+++.+.++++.|+++|.++.+|+|+.+.+....+.+.+.|......+...+|...|..++.+.+.+++.+|+++|
T Consensus 160 ~-~~~~~~~l~~~~~~a~~~g~~V~~Hae~~~~i~~~~~~~~~~G~~~~~~~~~~rp~~~E~~~v~~~~~la~~~g~~~h 238 (477)
T PRK13404 160 D-LKLDDRQILDVLAVARRHGAMVMVHAENHDMIAWLTKRLLAAGLTAPKYHAISRPMLAEREATHRAIALAELVDVPIL 238 (477)
T ss_pred C-CCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHCCCcchhhccccCCHHHHHHHHHHHHHHHHHhCCCEE
Confidence 3 456889999999999999999999999988776665677788988888888889999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079 288 VVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN 323 (331)
Q Consensus 288 i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~ 323 (331)
++|+++..+++.++++|++|++|+++|||||+.+..
T Consensus 239 i~Hvs~~~~~~~i~~~k~~g~~vt~e~~ph~L~l~~ 274 (477)
T PRK13404 239 IVHVSGREAAEQIRRARGRGLKIFAETCPQYLFLTA 274 (477)
T ss_pred EEECCCHHHHHHHHHHHHCCCeEEEEEChhhhccCH
Confidence 999999999999999999999999999999998764
No 6
>PRK08323 phenylhydantoinase; Validated
Probab=100.00 E-value=1.9e-35 Score=282.26 Aligned_cols=264 Identities=53% Similarity=0.821 Sum_probs=220.4
Q ss_pred cEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHH
Q 020079 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (331)
Q Consensus 54 ~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~ 133 (331)
+++|+|++|++++...+++|+|+||+|++|++. ++.++||++|++|+|||||+|+|+..++.+...+++++.+.+.
T Consensus 2 d~li~n~~v~~~~~~~~~~v~I~~g~I~~i~~~----~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~e~~~~~~~~ 77 (459)
T PRK08323 2 STLIKNGTVVTADDTYKADVLIEDGKIAAIGAN----LGDEVIDATGKYVMPGGIDPHTHMEMPFGGTVSSDDFETGTRA 77 (459)
T ss_pred cEEEECCEEEcCCCceEEEEEEECCEEEEEecC----CCceEEECCCCEEeccEEeeeeccccccCCccccCcHHHHHHH
Confidence 489999999998777789999999999999875 2458999999999999999999998765444578889888999
Q ss_pred HHhCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCc
Q 020079 134 ALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM 211 (331)
Q Consensus 134 ~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~ 211 (331)
++++||||++|+....+. ...+.++...... .....++.++......+.+..+++.++. +.|...+|.++++++.+.
T Consensus 78 a~~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ik~~~~~~~~~~ 156 (459)
T PRK08323 78 AACGGTTTIIDFALQPKGQSLREALEAWHGKAAGKAVIDYGFHMIITDWNEVVLDEMPELV-EEGITSFKLFMAYKGALM 156 (459)
T ss_pred HHhCCCCEEEeCcCCCCCCChHHHHHHHHHHhccCceEEEEEEEEecCCcHHHHHHHHHHH-HcCCCEEEEEEecCCCCC
Confidence 999999999999755443 4555555554443 2345666555433333445567787777 678889999998877778
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeC
Q 020079 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (331)
Q Consensus 212 ~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~ 291 (331)
++.+++.++++.|+++|.++++|+|+.++.....+.+...|......+...+|...|..++.+.+.++..+|.++|++|+
T Consensus 157 ~s~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~~a~~~~~~~~i~H~ 236 (459)
T PRK08323 157 LDDDELLRALQRAAELGALPMVHAENGDAIAYLQAKLLAEGKTGPEYHALSRPPEVEGEATNRAIMLAELAGAPLYIVHV 236 (459)
T ss_pred CCHHHHHHHHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCChhhhhccCCHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 89999999999999999999999998888777777777788888888888899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 292 MSMDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 292 ~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
++.++++.++.+|++|++|++++||||+.+.
T Consensus 237 s~~~~~~~i~~ak~~g~~vt~e~~p~~l~l~ 267 (459)
T PRK08323 237 SCKEALEAIRRARARGQRVFGETCPQYLLLD 267 (459)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEcCccceeec
Confidence 9999999999999999999999999977743
No 7
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=100.00 E-value=1.9e-35 Score=281.24 Aligned_cols=267 Identities=55% Similarity=0.850 Sum_probs=219.1
Q ss_pred EEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHHH
Q 020079 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAA 134 (331)
Q Consensus 55 ~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~ 134 (331)
++|+|++|++++...+++|+|+||+|++|++....+++.++||++|++|+|||||+|+|+.+++....++++++.+.+.+
T Consensus 1 lli~~~~v~~~~~~~~~~i~I~~g~I~~ig~~~~~~~~~~viD~~g~~vlPGlID~H~H~~~~~~~~~~~e~~~~~~~~a 80 (447)
T cd01314 1 LIIKNGTIVTADGSFKADILIEDGKIVAIGPNLEAPGGVEVIDATGKYVLPGGIDPHTHLELPFMGTVTADDFESGTRAA 80 (447)
T ss_pred CEEECCEEECCCCceeeeEEEECCEEEEeeCCCCCCCCceEEECCCCEEecCEEeccccccccccCccCcchHHHHHHHH
Confidence 47999999998777789999999999999975432234689999999999999999999987643346788999999999
Q ss_pred HhCCceEEecCcCCCC-CcHHHHHHHHHHHh-ccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcC
Q 020079 135 LAGGTTMHIDFVIPIN-GSLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212 (331)
Q Consensus 135 l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~ 212 (331)
+++||||++||....+ ....+.++...... .+..+++.++........+.++++.++. +.|...+|++++++..+.+
T Consensus 81 ~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~-~~g~~~ik~~~~~~~~~~~ 159 (447)
T cd01314 81 AAGGTTTIIDFAIPNKGQSLLEAVEKWRGKADGKSVIDYGFHMIITDWTDSVIEELPELV-KKGISSFKVFMAYKGLLMV 159 (447)
T ss_pred HhCCCcEEEeCCCCCCCCCHHHHHHHHHHHhcCCCcccEEEEEeecCCChHHHHHHHHHH-HcCCCEEEEEeccCCCCCC
Confidence 9999999999975443 34555555544332 2345555554443333445567777777 4788899999988888888
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCC
Q 020079 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292 (331)
Q Consensus 213 ~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~ 292 (331)
+++.++++++.|+++|+++++|+|+..+.....+++...|....+.+...+|...|..++.+.+.+++..+.++|++|++
T Consensus 160 s~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~~~~~~~~H~s 239 (447)
T cd01314 160 DDEELLDVLKRAKELGALVMVHAENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAIRLAELAGAPLYIVHVS 239 (447)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChHHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 99999999999999999999999988888777777777788877777778999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 293 SMDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 293 ~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
+..+++.++++|++|++|++++||||+.+.
T Consensus 240 ~~~~~~~i~~~k~~g~~v~~~~~ph~l~~~ 269 (447)
T cd01314 240 SKEAADEIARARKKGLPVYGETCPQYLLLD 269 (447)
T ss_pred CHHHHHHHHHHHHCCCeEEEecCchhheeC
Confidence 999999999999999999999999997654
No 8
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-35 Score=275.84 Aligned_cols=260 Identities=28% Similarity=0.411 Sum_probs=219.4
Q ss_pred cEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHH
Q 020079 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (331)
Q Consensus 54 ~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~ 133 (331)
+++|+|+++++++....++|+|+||+|++|++.....++.++||++|++++||+||.|+|+..+ |...+|++.++.++
T Consensus 2 ~~lIk~~~iv~~~~~~~~di~i~~g~I~~Ig~~l~~~~~~~iiD~~g~~v~PG~ID~HVH~rep--g~~~ke~~~tgs~A 79 (430)
T COG0044 2 DLLIKNARVVDPGEDEVADILIKDGKIAAIGKNLEPTSGAEIIDAKGLLVLPGLVDLHVHFREP--GFEHKETFETGSRA 79 (430)
T ss_pred cEEEeccEEEcCCCceEecEEEECCEEEEeccCCCCCCCCcEEECCCCEEccCeeEEEEecCCC--CcchhhhHHHHHHH
Confidence 4799999999997788999999999999999864433567999999999999999999999999 88999999999999
Q ss_pred HHhCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCc
Q 020079 134 ALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM 211 (331)
Q Consensus 134 ~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~ 211 (331)
++++|||+++||.+..+. ...+.++....... ...+++.++.+.+..+....+.+ +.. . ..+++.|++... ..
T Consensus 80 Aa~GG~Ttv~dmPnt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~it~~~~~~~~~~-~~~-~--~~g~~~F~~~~~-~~ 154 (430)
T COG0044 80 AAAGGVTTVVDMPNTKPPIDTAEALEDKLERAKGKSVVDYAFYGGLTKGNLGKLELT-ERG-V--EAGFKGFMDDST-GA 154 (430)
T ss_pred HHcCCceEEEECCCCCCCCCCHHHHHHHHHHhhccceeEEEEEEEEeccccchhhhh-hhh-h--ccceEEEecCCc-Cc
Confidence 999999999999876655 55666666666655 68889998888877654322222 222 1 455677776543 45
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeC
Q 020079 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (331)
Q Consensus 212 ~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~ 291 (331)
.+.+.+++.++++++.|.++.+|+|+++... ......|...++.+...+|...|..++.+.+.++..+|.++|++|.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~H~Ed~~~~~---~~~~~~g~~~~~~~~~~~p~~aE~~~iar~~~la~~~g~~vhi~Hi 231 (430)
T COG0044 155 LDDDVLEEALEYAAELGALILVHAEDDDLIA---EGVMNEGLRAPELGLAGRPPIAEASAIARDLELARATGARVHICHI 231 (430)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEecCChhHhh---hHHHhcCccchhhccCCCChHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 6889999999999999999999999987655 2345678888888888999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079 292 MSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN 323 (331)
Q Consensus 292 ~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~ 323 (331)
|+.++++.++.+|..|++|++++||||+.+..
T Consensus 232 St~~sv~li~~ak~~g~~vt~EvtphHL~l~~ 263 (430)
T COG0044 232 STKESVELIRAAKAEGIRVTAEVTPHHLLLDE 263 (430)
T ss_pred CCHHHHHHHHHHhhcCCceEEeecchheEccH
Confidence 99999999999999999999999999998874
No 9
>PRK07369 dihydroorotase; Provisional
Probab=100.00 E-value=5.3e-35 Score=273.80 Aligned_cols=261 Identities=23% Similarity=0.251 Sum_probs=207.6
Q ss_pred CccEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCC-CCCceEEeCCCCeeecccccccccccCCCCCCCChhhHH
Q 020079 52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFF 128 (331)
Q Consensus 52 ~~~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~-~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~ 128 (331)
|.+++|+|++|+++.. ...++|+|+||+|++|++.... +.+.++||++|++|+|||||+|+|+..+ +....+++.
T Consensus 1 ~~~~~i~n~~v~d~~~~~~~~~~v~I~dg~I~~i~~~~~~~~~~~~~iDa~G~~vlPG~ID~H~H~~~~--~~~~~e~~~ 78 (418)
T PRK07369 1 MSNELLQQVRVLDPVSNTDRIADVLIEDGKIQAIEPHIDPIPPDTQIIDASGLILGPGLVDLYSHSGEP--GFEERETLA 78 (418)
T ss_pred CCCEEEeCeEEECCCCCcccceeEEEECCEEEEecCCcccCCCCCEEEECCCCEEecCEEecccccCCC--CcCCCccHH
Confidence 3568999999998543 3678999999999999875432 2356899999999999999999999887 667789999
Q ss_pred HHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cceeeccccccccCC-ChhhHHHHHHHHHHhCCCeEEEEEe
Q 020079 129 SGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKW-DEVVSDEMEVMVKEKGINSFKFFMA 205 (331)
Q Consensus 129 ~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~ik~~~~ 205 (331)
++.++++++||||++||.+..+. ...+.++..++... .+.+++.++...+.. ..+.++++.++. +.|+..++.
T Consensus 79 s~~~aa~~GGvTtv~~~pn~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~ei~~l~-~~Gv~~f~~--- 154 (418)
T PRK07369 79 SLAAAAAAGGFTRVAILPDTFPPLDNPATLARLQQQAQQIPPVQLHFWGALTLGGQGKQLTELAELA-AAGVVGFTD--- 154 (418)
T ss_pred HHHHHHHhCCceEEEECCCCCCCCCCHHHHHHHHHHhcccCceeEEEEEEEeeCCCCccHhhHHHHH-HCCCEEEEC---
Confidence 99999999999999999865433 45566666555543 466788777665543 234567777776 678877762
Q ss_pred cCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCC
Q 020079 206 YKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285 (331)
Q Consensus 206 ~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~ 285 (331)
+....+...+.++++.+++.|.++.+|+|+.+..... +...|......+...+|+..|..++.+.+.+++.+|++
T Consensus 155 --~~~~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~---~~~~g~~~~~~~~~~~p~~aE~~av~r~~~la~~~~~~ 229 (418)
T PRK07369 155 --GQPLENLALLRRLLEYLKPLGKPVALWPCDRSLAGNG---VMREGLLALRLGLPGDPASAETTALAALLELVAAIGTP 229 (418)
T ss_pred --CCcCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhcC---cccCChhHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCc
Confidence 1223466788899999999999999999988764322 23444444555666789999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079 286 LYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN 323 (331)
Q Consensus 286 ~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~ 323 (331)
+|++|+|+.++++.++++|++|++|+++|||||+.+..
T Consensus 230 ~hi~HvSs~~~~~~i~~ak~~g~~vt~Ev~phhL~l~~ 267 (418)
T PRK07369 230 VHLMRISTARSVELIAQAKARGLPITASTTWMHLLLDT 267 (418)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCeEEEecHHHHhccH
Confidence 99999999999999999999999999999999998764
No 10
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=100.00 E-value=9.6e-34 Score=268.76 Aligned_cols=262 Identities=32% Similarity=0.448 Sum_probs=213.6
Q ss_pred cEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHH
Q 020079 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (331)
Q Consensus 54 ~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~ 133 (331)
+++|+|++|+++++...++|+|+||+|++|++... +++.++||++|++|+|||||+|+|+..+ +...++++.++.+.
T Consensus 1 dl~i~~~~v~~~~~~~~~~v~i~dg~I~~i~~~~~-~~~~~~id~~g~~v~PG~ID~H~H~~~~--~~~~~~~~~~~~~~ 77 (443)
T TIGR03178 1 DLIIRGGRVILPNGEREADVGVKGGKIAAIGPDIL-GPAAKIIDAGGLVVFPGVVDTHVHINEP--GRTEWEGFETGTRA 77 (443)
T ss_pred CEEEECcEEECCCCceEEEEEEECCEEEEeeCCCC-CCCCeEEECCCCEEeccEeccccccCCC--CccccchHHHHHHH
Confidence 47899999999887778999999999999997532 2356899999999999999999999876 45567888899999
Q ss_pred HHhCCceEEecCc-CCCCC-cHHHHHHHHHHHhc-cceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCC-
Q 020079 134 ALAGGTTMHIDFV-IPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS- 209 (331)
Q Consensus 134 ~l~~GvTtv~d~~-~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~- 209 (331)
++++||||++||. +..+. ...+.+....+... ...+++.++.+.. .+..+++.++. +.|+..+|+|+++.+.
T Consensus 78 ~~~gGvTtv~dmp~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~~i~~~~-~~G~~~ik~~~~~~~~~ 153 (443)
T TIGR03178 78 AAAGGITTYIDMPLNSIPATTTRASLEAKFEAAKGKLAVDVGFWGGLV---PYNLDDLRELD-EAGVVGFKAFLSPSGDD 153 (443)
T ss_pred HHcCCeEEEEECCCCCCCCCCcHHHHHHHHHHhccCCceeEEEEeccC---CCCHHHHHHHH-HCCCcEEEEEecccCCC
Confidence 9999999999996 22222 34445554444433 3566766554332 23355666666 6899999999875432
Q ss_pred --CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEE
Q 020079 210 --FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287 (331)
Q Consensus 210 --~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~ 287 (331)
...+.+.+.++++.++++|+++++|+|+.+......+.+...|......+...+|...|..++.+.+.+++++|+++|
T Consensus 154 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~ae~~~~~~~~~la~~~g~~vh 233 (443)
T TIGR03178 154 EFPHVDDWQLYKGMRELARLGQLLLVHAENPAITSALGEEAPPQGGVGADAYLASRPVFAEVEAIRRTLALAKVTGCRVH 233 (443)
T ss_pred CcccCCHHHHHHHHHHHHhcCCeEEEeccChHHHHHHHHHHHhcCCCChhHhcCcCCHHHHHHHHHHHHHHHHHhCCCEE
Confidence 256788999999999999999999999988777666677888888888887889999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 288 VVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 288 i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
++|+++..+++.+++++++|+++++++||||+.+.
T Consensus 234 i~Hiss~~~~~~i~~~~~~g~~it~e~~ph~l~l~ 268 (443)
T TIGR03178 234 VVHLSSAEAVELITEAKQEGLDVTVETCPHYLTLT 268 (443)
T ss_pred EEeCCCHHHHHHHHHHHHCCCcEEEEECccceEec
Confidence 99999999999999999999999999999998764
No 11
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=100.00 E-value=1.3e-33 Score=268.70 Aligned_cols=263 Identities=31% Similarity=0.404 Sum_probs=210.9
Q ss_pred cEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHH
Q 020079 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (331)
Q Consensus 54 ~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~ 133 (331)
+++|+|++|++++...+++|+|+||||++|++....+++.++||++|++|+|||||+|+|+..+ +....+++.+..++
T Consensus 1 dl~i~~~~v~~~~~~~~~~v~I~~g~I~~i~~~~~~~~~~~~iDa~G~~v~PG~ID~H~H~~~~--~~~~~e~~~~~s~a 78 (447)
T cd01315 1 DLVIKNGRVVTPDGVREADIAVKGGKIAAIGPDIANTEAEEVIDAGGLVVMPGLIDTHVHINEP--GRTEWEGFETGTKA 78 (447)
T ss_pred CEEEECCEEECCCCceEeEEEEECCEEEEEeCCCCCCCCCeEEECCCCEEeccEeeceeccCCC--CccccccHHHHHHH
Confidence 4799999999987777899999999999999864323457899999999999999999999876 44567888899999
Q ss_pred HHhCCceEEecCcC-CC-CCcHHHHHHHHHHHhcc-ceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCC-
Q 020079 134 ALAGGTTMHIDFVI-PI-NGSLTAGFEAYEKKAKN-SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS- 209 (331)
Q Consensus 134 ~l~~GvTtv~d~~~-~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~- 209 (331)
++++||||++||.. .. .....+.++...+.... ..+++.++.+... ...++++++. +.|+.++|+++++...
T Consensus 79 al~gGvTtv~d~p~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~ei~~l~-~~G~~giKv~~~~~~~~ 154 (447)
T cd01315 79 AAAGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHVDVGFWGGLVP---GNLDQLRPLD-EAGVVGFKCFLCPSGVD 154 (447)
T ss_pred HHhCCceEEEeCCCCCCCCcCCHHHHHHHHHHhccCceeeEEEEEeecC---CCHHHHHHHH-HcCCcEEEEEecccCCC
Confidence 99999999999962 11 22344555555444432 5666665543322 2345666666 6799999998765432
Q ss_pred --CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEE
Q 020079 210 --FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287 (331)
Q Consensus 210 --~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~ 287 (331)
...+.+.+.++++.|+++|+++.+|+|+.+............|......+...+|...|..++.+.+.++++.|+++|
T Consensus 155 ~~~~~~~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~g~~ih 234 (447)
T cd01315 155 EFPAVDDEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKETGCRLH 234 (447)
T ss_pred CcccCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHhhcCCCChHHhhccCCHHHHHHHHHHHHHHHHHhCCCEE
Confidence 235788999999999999999999999887766665566666766666677778999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 288 VVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 288 i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
++|.++..+++.+++++++|.+|++++||||+.+.
T Consensus 235 i~h~s~~~~~~~i~~~~~~g~~i~~e~~~h~l~~~ 269 (447)
T cd01315 235 IVHLSSAEAVPLIREARAEGVDVTVETCPHYLTFT 269 (447)
T ss_pred EEeCCCHHHHHHHHHHHHCCCceEEEeccccEEEc
Confidence 99999999999999999999999999999998764
No 12
>PRK07627 dihydroorotase; Provisional
Probab=100.00 E-value=2.2e-34 Score=270.35 Aligned_cols=260 Identities=20% Similarity=0.147 Sum_probs=196.2
Q ss_pred cEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHH
Q 020079 54 KILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (331)
Q Consensus 54 ~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~ 131 (331)
+++|+|++|+++.. ..+++|+|+||||++|++.....++.++||++|++|+|||||+|+|+..+ +....+++.++.
T Consensus 2 ~~~i~~~~v~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~iDa~g~~vlPG~iD~H~H~~~~--g~~~~e~~~t~s 79 (425)
T PRK07627 2 KIHIKGGRLIDPAAGTDRQADLYVAAGKIAAIGQAPAGFNADKTIDASGLIVCPGLVDLSARLREP--GYEYKATLESEM 79 (425)
T ss_pred eEEEEeeEEECCCCCccceeEEEEECCEEEEecCCCcCCCCCeEEECCCCEEeccEEeccccccCC--CccccCcHHHHH
Confidence 58999999998654 35789999999999998753222456899999999999999999999877 666788999999
Q ss_pred HHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cceeecccccccc-CCChhhHHHHHHHHHHhCCCeEEEEEecCC
Q 020079 132 AAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAIT-KWDEVVSDEMEVMVKEKGINSFKFFMAYKG 208 (331)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~ 208 (331)
++++.+||||+++|....+. ...+.++....... ....++..+.... ..+.+.+.++.++. +.|+..+|.+ .
T Consensus 80 ~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~l~-~~G~~~fk~~----~ 154 (425)
T PRK07627 80 AAAVAGGVTSLVCPPDTDPVLDEPGLVEMLKFRARNLNQAHVYPLGALTVGLKGEVLTEMVELT-EAGCVGFSQA----N 154 (425)
T ss_pred HHHHhCCeeEEEeCCCCCCCCCCHHHHHHHHHHhhccCceeEEEeCeEEcCCCccCHHHHHHHH-hCCEEEEEcC----C
Confidence 99999999999998654332 33333333332222 2333433333222 22345567777776 6788888743 1
Q ss_pred CCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEE
Q 020079 209 SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288 (331)
Q Consensus 209 ~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i 288 (331)
....+...+.++++.+++.|.++.+|+|+...... .....|....+.+...+|+..|..++.+.+.+++.+|+++|+
T Consensus 155 ~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~~~~~---~~~~~g~~~~~~~~~~~P~~aE~~av~r~~~la~~~~~~~hi 231 (425)
T PRK07627 155 VPVVDTQVLLRALQYASTFGFTVWLRPLDAFLGRG---GVAASGAVASRLGLSGVPVAAETIALHTIFELMRVTGARVHL 231 (425)
T ss_pred cccCCHHHHHHHHHHHHhcCCEEEEecCChhhhhC---CCcCCCHhHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEE
Confidence 22457788999999999999999999998754321 111222223334455689999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079 289 VHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN 323 (331)
Q Consensus 289 ~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~ 323 (331)
+|+|+..+++.++++|++|++|+++|||||+.+..
T Consensus 232 ~HvSs~~~~~~i~~ak~~g~~vt~Ev~ph~L~l~~ 266 (425)
T PRK07627 232 ARLSSAAGVALVRAAKAEGLPVTCDVGVNHVHLID 266 (425)
T ss_pred EeCCCHHHHHHHHHHHHCCCCeEEEeccchheEeH
Confidence 99999999999999999999999999999998763
No 13
>PRK06189 allantoinase; Provisional
Probab=100.00 E-value=6.9e-33 Score=263.22 Aligned_cols=266 Identities=28% Similarity=0.378 Sum_probs=211.9
Q ss_pred CCccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHH
Q 020079 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSG 130 (331)
Q Consensus 51 ~~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~ 130 (331)
|+.+++|+|++|++++...+++|+|+||+|++|++.... ++.++||++|++|+|||||+|+|+..+ +....+++.++
T Consensus 1 ~~~~~~i~~~~v~~~~~~~~~~v~i~~G~I~~i~~~~~~-~~~~~iD~~g~~vlPG~ID~H~H~~~~--~~~~~~~~~~~ 77 (451)
T PRK06189 1 MMYDLIIRGGKVVTPEGVYRADIGIKNGKIAEIAPEISS-PAREIIDADGLYVFPGMIDVHVHFNEP--GRTHWEGFATG 77 (451)
T ss_pred CCccEEEECCEEEcCCCcEEEEEEEECCEEEEecCCCCC-CCCeEEECCCCEEecCEEEeeeccCCC--CCCCcccHHHH
Confidence 346789999999998877789999999999999875432 346899999999999999999999876 45567899999
Q ss_pred HHHHHhCCceEEecCc-CC-CCCcHHHHHHHHHHHh-ccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecC
Q 020079 131 QAAALAGGTTMHIDFV-IP-INGSLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK 207 (331)
Q Consensus 131 ~~~~l~~GvTtv~d~~-~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~ 207 (331)
.+.++++||||+++|. +. ......+.+....+.. ..+.+++.++.... .+..+++..+. +.|+..+|.|++..
T Consensus 78 ~~aa~~gGvTt~~~~p~~t~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~~l~~l~-~~Gv~~~k~f~~~~ 153 (451)
T PRK06189 78 SAALAAGGCTTYFDMPLNSIPPTVTREALDAKAELARQKSAVDFALWGGLV---PGNLEHLRELA-EAGVIGFKAFMSNS 153 (451)
T ss_pred HHHHHhCCEEEEEECCCCCCCCCCcHHHHHHHHHHhCcCceEeEEEEeccc---ccCHHHHHHHH-HcCCcEEEEEcccc
Confidence 9999999999999996 21 1123334444444433 34677777654332 22355677776 78999999987542
Q ss_pred C---CCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCC
Q 020079 208 G---SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT 284 (331)
Q Consensus 208 ~---~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~ 284 (331)
+ ....+...+.++++.+++.|.++.+|+|+.+........+...|..+...++..+|...|..++.+.+.+++++|.
T Consensus 154 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~P~~~E~~~v~~~l~la~~~g~ 233 (451)
T PRK06189 154 GTDEFRSSDDLTLYEGMKEIAALGKILALHAESDALTRHLTTQARQQGKTDVRDYLESRPVVAELEAVQRALLYAQETGC 233 (451)
T ss_pred CCCCcCcCCHHHHHHHHHHHHhcCCeEEEECCChHHHHHHHHHHHhcCCCChhHccccCCHHHHHHHHHHHHHHHHHhCC
Confidence 2 2245677888999999999999999999887665554556677877777777788999999999999999999999
Q ss_pred CEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079 285 PLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN 323 (331)
Q Consensus 285 ~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~ 323 (331)
++|++|+++..+++.++++|++|++|+++|||||+.+..
T Consensus 234 ~~hi~HiSt~~~~~~i~~~k~~g~~vt~ev~ph~L~l~~ 272 (451)
T PRK06189 234 PLHFVHISSGKAVALIAEAKKRGVDVSVETCPHYLLFTE 272 (451)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEeCHHHhhcCH
Confidence 999999999999999999999999999999999987653
No 14
>PRK09059 dihydroorotase; Validated
Probab=100.00 E-value=2.6e-33 Score=263.49 Aligned_cols=262 Identities=19% Similarity=0.217 Sum_probs=201.0
Q ss_pred CCccEEEECcEEEeCCCc--eeeeEEEeCCEEEEeeCCCC---CCCCceEEeCCCCeeecccccccccccCCCCCCCChh
Q 020079 51 SSSKILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNIN---VGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETID 125 (331)
Q Consensus 51 ~~~~~~i~n~~i~~~~~~--~~~~v~i~~g~I~~ig~~~~---~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~ 125 (331)
|+.+++|+|++|++++.. .+++|+|+||+|++|++... .+.+.++||++|++|+|||||+|+|+..+ +..+.+
T Consensus 1 ~~~~~~i~n~~v~~~~~~~~~~~~v~I~~G~I~~i~~~~~~~~~~~~~~viDa~G~~v~PG~ID~HvH~~~~--~~~~~e 78 (429)
T PRK09059 1 MMRPILLANARIIDPSRGLDEIGTVLIEDGVIVAAGKGAGNQGAPEGAEIVDCAGKAVAPGLVDARVFVGEP--GAEHRE 78 (429)
T ss_pred CCcCEEEEeeEEECCCCCcccceEEEEECCEEEEecCccccccCCCCCeEEECCCCEEeccEEecccccCCC--Cchhhh
Confidence 456799999999987653 47899999999999987532 12346899999999999999999999876 456678
Q ss_pred hHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhcc-ceeeccccccccCC-ChhhHHHHHHHHHHhCCCeEEE
Q 020079 126 DFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCMDYGFHMAITKW-DEVVSDEMEVMVKEKGINSFKF 202 (331)
Q Consensus 126 ~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~ik~ 202 (331)
++....+.++++||||+++|....+. ...+.+....+.... +.+++.++...... ..+.+.++..+. +.|+..++.
T Consensus 79 ~~~~~s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~l~e~~~l~-~~Gv~~f~~ 157 (429)
T PRK09059 79 TIASASRAAAAGGVTSIIMMPDTDPVIDDVALVEFVKRTARDTAIVNIHPAAAITKGLAGEEMTEFGLLR-AAGAVAFTD 157 (429)
T ss_pred hHHHHHHHHHhCCcEEEEeccCCCCCCCCHHHHHHHHHHhcccCcccEEEEeEEecCCCCcchHHHHHHH-hcCcEEEec
Confidence 88889999999999999999754433 445556655555443 56777766655443 344566776666 667766542
Q ss_pred EEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhc
Q 020079 203 FMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV 282 (331)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~ 282 (331)
. +....+...+.++++.+++.|.++.+|+|+.+..... ....|......+...+|...|..++.+.+.++..+
T Consensus 158 ---~-~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~---~~~~~~~~~~~~~~~rP~~aE~~av~r~~~la~~~ 230 (429)
T PRK09059 158 ---G-RRSVANTQVMRRALTYARDFDAVIVHETRDPDLGGNG---VMNEGLFASWLGLSGIPREAEVIPLERDLRLAALT 230 (429)
T ss_pred ---C-CcccCCHHHHHHHHHHHHhcCCEEEEecCChhhhcCC---CcCCcHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1 1223356678899999999999999999988754311 01112222233445689999999999999999999
Q ss_pred CCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 283 NTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 283 g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
|+++|++|+++..+++.++++|++|++|+++|||||+.+.
T Consensus 231 ~~~~hi~hvs~~~~~~~i~~ak~~g~~vt~ev~phhL~l~ 270 (429)
T PRK09059 231 RGRYHAAQISCAESAEALRRAKDRGLKVTAGVSINHLSLN 270 (429)
T ss_pred CCcEEEEecCCHHHHHHHHHHHHCCCCEEEeecHHHHhcc
Confidence 9999999999999999999999999999999999999876
No 15
>PRK08044 allantoinase; Provisional
Probab=100.00 E-value=7.2e-32 Score=255.47 Aligned_cols=264 Identities=27% Similarity=0.374 Sum_probs=213.1
Q ss_pred CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHH
Q 020079 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (331)
Q Consensus 52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~ 131 (331)
+.+++|+|++|++.+....++|+|+||+|++|++... .+.++||++|++++|||||.|+|+..+ +....+++....
T Consensus 2 ~~~~~i~n~~vi~~~~~~~~~i~I~dg~I~~i~~~~~--~~~~~iD~~G~~v~Pg~iD~h~h~~~~--~~~~~e~~~~~~ 77 (449)
T PRK08044 2 SFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLG--DAKEVMDASGLVVSPGMVDAHTHISEP--GRSHWEGYETGT 77 (449)
T ss_pred CceEEEECcEEEcCCCCEEEEEEEECCEEEEecCCCC--CCCeEEECCCCEEcCCeeccccccCCC--CccccccHHHHH
Confidence 3578999999998766667899999999999987532 246899999999999999999999877 445578899999
Q ss_pred HHHHhCCceEEecCcC-CCC-CcHHHHHHHHHHHh-ccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCC
Q 020079 132 AAALAGGTTMHIDFVI-PIN-GSLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKG 208 (331)
Q Consensus 132 ~~~l~~GvTtv~d~~~-~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~ 208 (331)
+.++++||||+.||.. ..+ ....+.++...+.. ..+.+++.++.+.... ...++.++. +.|+.++|+|+.+.+
T Consensus 78 ~aa~~gGvTtv~d~~~~~~p~~~~~~~~~~~~~~~~~~s~vd~~~~~~~~~~---~~~ei~~l~-~~gv~~fk~~~~~~~ 153 (449)
T PRK08044 78 RAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSY---NLDRLHELD-EVGVVGFKCFVATCG 153 (449)
T ss_pred HHHHhCCceEEECCccCCCCCCCcHHHHHHHHHHhccCCeeeEEEEeeeCCC---CHHHHHHHH-HcCceEEEEEecccC
Confidence 9999999999999962 222 24556665555544 3467777766555432 356666666 679999999976522
Q ss_pred C-------CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHh
Q 020079 209 S-------FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEF 281 (331)
Q Consensus 209 ~-------~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~ 281 (331)
. ...++..+.+.++.+++.|.++.+|+|+.+........+...|....+.+...+|...|..++.+.+.++++
T Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~~~~G~~~~~~~~~~~P~~~E~~~v~r~~~lA~~ 233 (449)
T PRK08044 154 DRGIDNDFRDVNDWQFYKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKV 233 (449)
T ss_pred cccccCCccCcCHHHHHHHHHHHHhcCCEEEEecCCHHHHHHHHHHHHhcCCCChhhccccCCHHHHHHHHHHHHHHHHH
Confidence 1 224667888899999999999999999988766544456677877777888889999999999999999999
Q ss_pred cCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079 282 VNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN 323 (331)
Q Consensus 282 ~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~ 323 (331)
.|+++|++|+++..+++.++++|++|.++++++||||+.+..
T Consensus 234 ~g~~vhi~HiSt~~~~~~i~~ak~~G~~it~e~~~h~L~l~~ 275 (449)
T PRK08044 234 AGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDT 275 (449)
T ss_pred hCCCEEEEeCCCHHHHHHHHHHHHCCCCEEEEcChhhhcccH
Confidence 999999999999999999999999999999999999998664
No 16
>PRK08417 dihydroorotase; Provisional
Probab=100.00 E-value=5.7e-32 Score=251.74 Aligned_cols=231 Identities=14% Similarity=0.159 Sum_probs=181.3
Q ss_pred EEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC-
Q 020079 73 VYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING- 151 (331)
Q Consensus 73 v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~- 151 (331)
|+|+||||++|++.. .+.++||++|++|+|||||+|+|+..+ +.. .+++.++.++++++||||++||.+..+.
T Consensus 1 i~I~dG~I~~i~~~~---~~~~viDa~g~~vlPG~ID~HvH~~~~--~~~-~e~~~t~s~aA~aGGvTtv~dmpnt~P~~ 74 (386)
T PRK08417 1 IRIKDGKITEIGSDL---KGEEILDAKGKTLLPALVDLNVSLKND--SLS-SKNLKSLENECLKGGVGSIVLYPDSTPAI 74 (386)
T ss_pred CEEECCEEEEecCCC---CCCeEEECCCCEEccCeeEEeeeeCCC--CcC-hhhHHHHHHHHHcCCcEEEEeCCCCCCCC
Confidence 579999999998753 346899999999999999999999876 433 5899999999999999999999764333
Q ss_pred cHHHHHHHHHHHhc---cceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcC
Q 020079 152 SLTAGFEAYEKKAK---NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228 (331)
Q Consensus 152 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g 228 (331)
...+.++...+... ...+++.. .. ..++..+++..+. +.|+..+|.+. ..+++.+.++++.+++.|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~i~~l~-~~Gv~~~k~~~------~~~~~~l~~~~~~a~~~g 143 (386)
T PRK08417 75 DNEIALELINSAQRELPMQIFPSIR---AL-DEDGKLSNIATLL-KKGAKALELSS------DLDANLLKVIAQYAKMLD 143 (386)
T ss_pred CCHHHHHHHHHHhhccCCcEEEEEE---EE-CCCccHHHHHHHH-HCCCEEEECCC------CCCHHHHHHHHHHHHHcC
Confidence 33344443333222 22333321 22 2334467777776 68988877531 357889999999999999
Q ss_pred CcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCC
Q 020079 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGP 308 (331)
Q Consensus 229 ~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi 308 (331)
+++.+|+|+.+.... .+...|....+.+...+|...|..++.+.+.++..+|+++|++|+|+.++++.++++|++|+
T Consensus 144 ~~V~~HaEd~~~~~~---~~~~~g~~~~~~~~~~rp~~aE~~~v~~~~~la~~~~~~lhi~hvS~~~~~~~i~~ak~~g~ 220 (386)
T PRK08417 144 VPIFCRCEDSSFDDS---GVMNDGELSFELGLPGIPSIAETKEVAKMKELAKFYKNKVLFDTLALPRSLELLDKFKSEGE 220 (386)
T ss_pred CEEEEeCCCHHHhhH---HHHhcChhhHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCC
Confidence 999999999765443 23445655556666778999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCccccchh
Q 020079 309 NFLNTTIPLCDSCSN 323 (331)
Q Consensus 309 ~v~~~~~p~~~~~~~ 323 (331)
+|+++|||||+.+..
T Consensus 221 ~vt~ev~ph~L~l~~ 235 (386)
T PRK08417 221 KLLKEVSIHHLILDD 235 (386)
T ss_pred CEEEEechHHHeeCH
Confidence 999999999999874
No 17
>PRK02382 dihydroorotase; Provisional
Probab=100.00 E-value=1.1e-30 Score=247.50 Aligned_cols=257 Identities=27% Similarity=0.398 Sum_probs=195.9
Q ss_pred CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHH
Q 020079 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (331)
Q Consensus 52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~ 131 (331)
|.+++|+|++|++.+...+++|+|+||+|++|++....+++.++||++|++|+|||||+|+|+..+ +....+++.+..
T Consensus 1 ~~dl~i~n~~v~~~~~~~~~~v~I~dg~I~~i~~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~--g~~~~e~~~~~~ 78 (443)
T PRK02382 1 MRDALLKDGRVYYNNSLQPRDVRIDGGKITAVGKDLDGSSSEEVIDARGMLLLPGGIDVHVHFREP--GYTHKETWYTGS 78 (443)
T ss_pred CceEEEECCEEEeCCCceEEEEEEECCEEEEecCCCCCCCCCeEEECCCCEEcCCEeeeeeeccCC--CCCchhhHHHHH
Confidence 357899999999866667899999999999998654322346899999999999999999999876 556678888999
Q ss_pred HHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccceeeccccccccCCChhhHHHHHHHHHHhCCCeE-EEEEec-C
Q 020079 132 AAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSF-KFFMAY-K 207 (331)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i-k~~~~~-~ 207 (331)
+.++++||||++++....+. ...+.+....+.. ....+++.++.... ...+++..+. +.|+..+ |+++.. .
T Consensus 79 ~aa~~gGvTtv~~~~~t~p~~~~~~~~~~~~~~a~~~s~v~~~~~~~~~----~~~~~l~~l~-~~gv~~~gkv~~~~~~ 153 (443)
T PRK02382 79 RSAAAGGVTTVVDQPNTDPPTVDGESFDEKAELAARKSIVDFGINGGVT----GNWDPLESLW-ERGVFALGEIFMADST 153 (443)
T ss_pred HHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCcCceEEEEEEeeec----cchhhHHHHH-hcCccceeEEEEEecC
Confidence 99999999999999754433 3444454444433 33556665554322 1234566666 4587777 777643 2
Q ss_pred CCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEE
Q 020079 208 GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287 (331)
Q Consensus 208 ~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~ 287 (331)
+....+++.+.++++.+++.|+++.+|+|+.+....... ...|...+..+...+|...|..++.+.+.+++..|+++|
T Consensus 154 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~--~~~g~~~~~~~~~~~p~~~E~~av~~~~~la~~~g~~~h 231 (443)
T PRK02382 154 GGMGIDEELFEEALAEAARLGVLATVHAEDEDLFDELAK--LLKGDADADAWSAYRPAAAEAAAVERALEVASETGARIH 231 (443)
T ss_pred CCcccCHHHHHHHHHHHHhcCCeEEEecCCHHHHHHhhH--hhcCCCCHhhCCCcCCHHHHHHHHHHHHHHHHHhCCCEE
Confidence 234457789999999999999999999998765432211 223555556666678999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 288 VVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 288 i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
++|+++..+++.+++++ |++++||||+.+.
T Consensus 232 i~h~ss~~~~~~i~~~~-----vt~ev~ph~L~l~ 261 (443)
T PRK02382 232 IAHISTPEGVDAARREG-----ITCEVTPHHLFLS 261 (443)
T ss_pred EEECCCHHHHHHHHHCC-----cEEEEchhhhhcC
Confidence 99999999999888764 9999999998765
No 18
>PRK09060 dihydroorotase; Validated
Probab=100.00 E-value=2.1e-30 Score=245.28 Aligned_cols=256 Identities=25% Similarity=0.311 Sum_probs=194.9
Q ss_pred CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHH
Q 020079 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (331)
Q Consensus 52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~ 131 (331)
..+++|+|++|++++....++|+|+||+|.+|++... +++.++||++|++|+|||||+|+|+..+ +...++++.+..
T Consensus 4 ~~d~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~-~~~~~~iD~~G~~v~PG~ID~HvH~~~~--~~~~~e~~~t~~ 80 (444)
T PRK09060 4 TFDLILKGGTVVNPDGEGRADIGIRDGRIAAIGDLSG-ASAGEVIDCRGLHVLPGVIDSQVHFREP--GLEHKEDLETGS 80 (444)
T ss_pred cCcEEEECCEEECCCCCeeeEEEEECCEEEEecCCCC-CCCceEEECCCCEEccCEEeccccccCC--CCCccchHHHHH
Confidence 3578999999999877677999999999999987432 2346899999999999999999999876 556788999999
Q ss_pred HHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecC--
Q 020079 132 AAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK-- 207 (331)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~-- 207 (331)
++++++||||++||....+. ...+.+....+... ...+++.++......+. +++.++....|+.++|+|+++.
T Consensus 81 ~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~---~~l~el~~~~gv~g~k~fm~~~~~ 157 (444)
T PRK09060 81 RAAVLGGVTAVFEMPNTNPLTTTAEALADKLARARHRMHCDFAFYVGGTRDNA---DELAELERLPGCAGIKVFMGSSTG 157 (444)
T ss_pred HHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhcccceeeEEEEeccCCCCH---HHHHHHHhhcCceEEEEEeccCCC
Confidence 99999999999999754333 45555555544443 36778777655443332 3444444345888899887542
Q ss_pred CCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEE
Q 020079 208 GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287 (331)
Q Consensus 208 ~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~ 287 (331)
.....+...+.++++. .+.++.+|+|+.+.+... ..+...| .+..+...+|+..|..++.+.+.+++..|+++|
T Consensus 158 ~~~~~d~~~l~~~~~~---~~~~v~~H~E~~~l~~~~-~~~~~~g--~~~~~~~~~p~~aE~~av~~~~~la~~~~~~lh 231 (444)
T PRK09060 158 DLLVEDDEGLRRILRN---GRRRAAFHSEDEYRLRER-KGLRVEG--DPSSHPVWRDEEAALLATRRLVRLARETGRRIH 231 (444)
T ss_pred CcccCCHHHHHHHHHh---CCCeEEEECCCHHHHHHH-HHHHhcC--CcccccccCCHHHHHHHHHHHHHHHHHHCCCEE
Confidence 1223355566666544 489999999998765543 3445666 555666778999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 288 VVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 288 i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
++|+++.++++.++++|+ .|++++||||+.+.
T Consensus 232 i~h~st~~~v~~i~~~~~---~vt~ev~ph~l~l~ 263 (444)
T PRK09060 232 VLHVSTAEEIDFLADHKD---VATVEVTPHHLTLA 263 (444)
T ss_pred EEeCCCHHHHHHHHHhCC---CeEEEeChHHhccC
Confidence 999999999888887765 48999999998765
No 19
>PRK09357 pyrC dihydroorotase; Validated
Probab=100.00 E-value=1.1e-30 Score=246.72 Aligned_cols=259 Identities=26% Similarity=0.312 Sum_probs=194.7
Q ss_pred cEEEECcEEEeCC-CceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHH
Q 020079 54 KILIKGGTVVNAH-HQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132 (331)
Q Consensus 54 ~~~i~n~~i~~~~-~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~ 132 (331)
+++|+|++|++++ ...+++|+|+||+|.+|++... +++.++||++|++|+|||||+|+|+..+ +..++++++.+.+
T Consensus 2 ~~~i~~~~v~~~~~~~~~~~I~I~dg~I~~i~~~~~-~~~~~~iD~~g~~v~PG~ID~H~H~~~~--~~~~~e~~~~~~~ 78 (423)
T PRK09357 2 MILIKNGRVIDPKGLDEVADVLIDDGKIAAIGENIE-AEGAEVIDATGLVVAPGLVDLHVHLREP--GQEDKETIETGSR 78 (423)
T ss_pred cEEEEeEEEECCCCCcceeeEEEECCEEEEeeCCCC-CCCCeEEECCCCEEeCCEEecccccCCC--CccccccHHHHHH
Confidence 3799999999874 3568999999999999987522 2346899999999999999999999776 5567899999999
Q ss_pred HHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhcc-ceeeccccccccC-CChhhHHHHHHHHHHhCCCeEEEEEecCCC
Q 020079 133 AALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCMDYGFHMAITK-WDEVVSDEMEVMVKEKGINSFKFFMAYKGS 209 (331)
Q Consensus 133 ~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~ 209 (331)
.++++||||+.|+....+. +..+.++...+.... ...++..+..... ...+..+++.++. +.|+..+ ..++.
T Consensus 79 ~a~~~GvTt~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gv~~~----~~~~~ 153 (423)
T PRK09357 79 AAAAGGFTTVVAMPNTKPVIDTPEVVEYVLDRAKEAGLVDVLPVGAITKGLAGEELTEFGALK-EAGVVAF----SDDGI 153 (423)
T ss_pred HHHhCCCeEEEecCCCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEEeCCCCccHHHHHHHH-hCCcEEE----ECCCc
Confidence 9999999999999754332 444555554444432 3344443332221 1223456666665 4565333 34455
Q ss_pred CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEE
Q 020079 210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (331)
Q Consensus 210 ~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~ 289 (331)
+..+++.++++++.|+++|+++++|+++...... .+...|....+.+...+|...|..++.+.+.+++..|+++|++
T Consensus 154 ~~~~~~~l~~~~~~a~~~g~~v~iH~ee~~~~~~---~~~~~g~~~~~~~~~~~p~~~E~~~i~~~~~la~~~g~~~hi~ 230 (423)
T PRK09357 154 PVQDARLMRRALEYAKALDLLIAQHCEDPSLTEG---GVMNEGEVSARLGLPGIPAVAEEVMIARDVLLAEATGARVHIC 230 (423)
T ss_pred ccCCHHHHHHHHHHHHhcCCEEEEeCCCHHHhhc---ccccCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence 6678899999999999999999999987544321 1223333333444556788999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079 290 HVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN 323 (331)
Q Consensus 290 H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~ 323 (331)
|+++...++.++.++++|++|++++||||+.+..
T Consensus 231 H~s~~~~~~~i~~a~~~g~~v~~e~~ph~L~~~~ 264 (423)
T PRK09357 231 HVSTAGSVELIRWAKALGIKVTAEVTPHHLLLTD 264 (423)
T ss_pred eCCCHHHHHHHHHHHHcCCCEEEEechHHheEcH
Confidence 9999999999999999999999999999988764
No 20
>PRK09236 dihydroorotase; Reviewed
Probab=99.98 E-value=6e-30 Score=242.64 Aligned_cols=261 Identities=25% Similarity=0.299 Sum_probs=196.8
Q ss_pred ccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHH
Q 020079 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132 (331)
Q Consensus 53 ~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~ 132 (331)
.+++|+|++|++++....++|+|+||+|++|++....+++.++||++|++|+|||||+|+|+..+ +....+++....+
T Consensus 2 ~~~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~~~~~~~~id~~g~~v~PG~ID~HvH~~~~--~~~~~e~~~~~~~ 79 (444)
T PRK09236 2 KRILIKNARIVNEGKIFEGDVLIENGRIAKIASSISAKSADTVIDAAGRYLLPGMIDDQVHFREP--GLTHKGDIASESR 79 (444)
T ss_pred ccEEEECCEEEcCCCceEeEEEEECCEEEEecCCCCCCCCCeEEECCCCEECCCEEEcccccccC--cccccccHHHHHH
Confidence 56899999999976666789999999999998754322356899999999999999999999875 4455678888899
Q ss_pred HHHhCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecC-CC
Q 020079 133 AALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK-GS 209 (331)
Q Consensus 133 ~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~-~~ 209 (331)
.++++||||++||....+. ...+.+....+.. ....+++.++.+.. .+..+++.++. +.|+.++|+|++.. +.
T Consensus 80 aa~~~GvTtv~d~p~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~e~~~l~-~~g~~g~k~~~~~~~~~ 155 (444)
T PRK09236 80 AAVAGGITSFMEMPNTNPPTTTLEALEAKYQIAAQRSLANYSFYFGAT---NDNLDEIKRLD-PKRVCGVKVFMGASTGN 155 (444)
T ss_pred HHHhCCcEEEEeCCCCCCCcCcHHHHHHHHHHhccCeEEEEEEEeccC---cccHHHHHHHH-HccCcEEEEEeccCCCC
Confidence 9999999999999754333 3344454444433 34567777665433 22356666666 56888999987532 11
Q ss_pred C-cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHH-cCCC-CcccccccCChHHHHHHHHHHHHHHHhcCCCE
Q 020079 210 F-MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIE-LGIT-GPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286 (331)
Q Consensus 210 ~-~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~-~G~~-~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~ 286 (331)
. ..+.+.++++++ ..++++.+|+|+.+.+......+.. .|.. ....|...+|...|..++.+.+.++++.++++
T Consensus 156 ~~~~~~~~~~~~~~---~~~~~v~~H~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~rp~~ae~~av~~~~~la~~~~~~~ 232 (444)
T PRK09236 156 MLVDNPETLERIFR---DAPTLIATHCEDTPTIKANLAKYKEKYGDDIPAEMHPLIRSAEACYKSSSLAVSLAKKHGTRL 232 (444)
T ss_pred cccCcHHHHHHHHH---hcCCEEEEecCCHHHHHHHHHHHHHhcCCCCChhhccccCCHHHHHHHHHHHHHHHHHHCCCE
Confidence 1 223455555644 4589999999987765543333333 2532 44456667899999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 287 YVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 287 ~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
|++|+++..+++.+++++.+|.+|++++||||+.+.
T Consensus 233 hi~h~st~~~~~~i~~~~~~g~~vt~e~~~H~l~l~ 268 (444)
T PRK09236 233 HVLHISTAKELSLFENGPLAEKRITAEVCVHHLWFD 268 (444)
T ss_pred EEEeCCCHHHHHHHHHHHHCCCCEEEEEchhhhhcC
Confidence 999999999999999999999999999999999876
No 21
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=99.98 E-value=3.9e-30 Score=241.63 Aligned_cols=246 Identities=25% Similarity=0.298 Sum_probs=190.9
Q ss_pred eeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCC
Q 020079 69 QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP 148 (331)
Q Consensus 69 ~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~ 148 (331)
..++|+|+||||++|++.. .+.+.++||++|++|+|||||+|+|+..+ +....+++....+.++++||||++++...
T Consensus 4 ~~~~v~I~~g~I~~i~~~~-~~~~~~~ida~g~~v~PG~ID~H~H~~~~--~~~~~~~~~~~~~~~~~~GvTtv~~~~~t 80 (411)
T TIGR00857 4 TEVDILVEGGRIKKIGKLR-IPPDAEVIDAKGLLVLPGFIDLHVHLRDP--GEEYKEDIESGSKAAAHGGFTTVADMPNT 80 (411)
T ss_pred EEEEEEEECCEEEEeeccC-CCCCCeEEECCCCEEecCEEEcccCCCCC--CCccHhHHHHHHHHHHhCCeEEEEEecCC
Confidence 4678999999999997522 22345799999999999999999999865 44567889889999999999999998654
Q ss_pred CCC-cHHHHHHHHHHHhc-cceeeccccccccCCC-hhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHH
Q 020079 149 ING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWD-EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCK 225 (331)
Q Consensus 149 ~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~ 225 (331)
.+. ...+.++...+... ...+++.++.+.+... .+.++++.++. ..|+.+ +.+..+. .+..+...+.++++.++
T Consensus 81 ~p~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~~~~l~e~~~l~-~~Gv~g-~~f~~~~-~~~~~~~~l~~~~~~a~ 157 (411)
T TIGR00857 81 KPPIDTPETLEWKLQRLKKVSLVDVHLYGGVTQGNQGKELTEAYELK-EAGAVG-RMFTDDG-SEVQDILSMRRALEYAA 157 (411)
T ss_pred CCCCCcHHHHHHHHHHhccCCcccEEEEEEEecCCccccHHHHHHHH-HCCcEE-EEEEeCC-cccCCHHHHHHHHHHHH
Confidence 332 44555655555443 3567777666655432 22356666666 568776 2222221 22357889999999999
Q ss_pred HcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHH
Q 020079 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARK 305 (331)
Q Consensus 226 ~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~ 305 (331)
++|+++.+|+|+.+..... +...|...++.+...+|+..|..++.+.+.++...++++|++|+++.++++.++++|+
T Consensus 158 ~~g~~v~iH~E~~~l~~~~---~~~~g~~~~~~~~~~~p~~aE~~ai~~~~~la~~~~~~~~i~Hvs~~~~l~~i~~a~~ 234 (411)
T TIGR00857 158 IAGVPIALHAEDPDLIYGG---VMHEGPSAAQLGLPARPPEAEEVAVARLLELAKHAGCPVHICHISTKESLELIVKAKS 234 (411)
T ss_pred HcCCEEEEecCCHHHHhhh---hhcCCcccHhhCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHHHHH
Confidence 9999999999987654422 3445666677778889999999999999999999999999999999999999999999
Q ss_pred cCCCEEEecCCccccchh
Q 020079 306 AGPNFLNTTIPLCDSCSN 323 (331)
Q Consensus 306 ~Gi~v~~~~~p~~~~~~~ 323 (331)
+|++|+++|||||+.++.
T Consensus 235 ~g~~v~~ev~ph~L~~~~ 252 (411)
T TIGR00857 235 QGIKITAEVTPHHLLLSE 252 (411)
T ss_pred cCCcEEEeechhhheecH
Confidence 999999999999998763
No 22
>PRK07575 dihydroorotase; Provisional
Probab=99.97 E-value=5.6e-29 Score=235.38 Aligned_cols=257 Identities=23% Similarity=0.305 Sum_probs=188.0
Q ss_pred CCccEEEECcEEEeCCC-ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHH
Q 020079 51 SSSKILIKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (331)
Q Consensus 51 ~~~~~~i~n~~i~~~~~-~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~ 129 (331)
||++++|+|++|++++. ...++|+|+||+|.+|++....+...++||++|++|+|||||+|+|+..+ +..++++++.
T Consensus 1 ~~~~~~i~~~~i~~~~~~~~~~~I~I~dg~I~~ig~~~~~~~~~~vid~~g~~v~PG~ID~H~H~~~~--~~~~~e~~~~ 78 (438)
T PRK07575 1 MMMSLLIRNARILLPSGELLLGDVLVEDGKIVAIAPEISATAVDTVIDAEGLTLLPGVIDPQVHFREP--GLEHKEDLFT 78 (438)
T ss_pred CcceEEEECCEEECCCCCEEeeeEEEECCEEEEecCCCCCCCCCeEEECCCCEEcccEEEeeeccCCC--CCcCcchHHH
Confidence 34578999999998655 46789999999999999754322235899999999999999999998766 5668899999
Q ss_pred HHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHH-HhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecC
Q 020079 130 GQAAALAGGTTMHIDFVIPING-SLTAGFEAYEK-KAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK 207 (331)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~ 207 (331)
+.+.++++||||++||....+. ...+.+....+ ......+++.++.+... +.+.++.. ..+..++|.|+...
T Consensus 79 ~~~aa~~gGvTt~~dmp~~~p~~~~~~~~~~~~~~a~~~~~v~~~~~~~~~~---~~l~~l~~---~~~~~g~~~f~~~~ 152 (438)
T PRK07575 79 ASRACAKGGVTSFLEMPNTKPLTTTQAALDDKLARAAEKCVVNYGFFIGATP---DNLPELLT---ANPTCGIKIFMGSS 152 (438)
T ss_pred HHHHHHhCCEEEEEECCCCCCCCCcHHHHHHHHHHhccCcEEEEEEEccccc---cCHHHHHH---hhCCeEEEEEEeeC
Confidence 9999999999999999754332 34444444333 33446788777755432 22333332 23667788876421
Q ss_pred C-CCcC-CHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCC
Q 020079 208 G-SFMI-NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285 (331)
Q Consensus 208 ~-~~~~-~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~ 285 (331)
. .... +...+++.+ ++.+.++..|+|+.+...... ....|...+..+...+|+..|..++.+.+.+++.+|++
T Consensus 153 ~~~~~~~~~~~~~~~~---~~~~~~v~~h~e~~~l~~~~~--~~~~g~~~~~~~~~~~p~~aE~~av~~~~~la~~~g~~ 227 (438)
T PRK07575 153 HGPLLVDEEAALERIF---AEGTRLIAVHAEDQARIRARR--AEFAGISDPADHSQIQDEEAALLATRLALKLSKKYQRR 227 (438)
T ss_pred CCCcccCcHHHHHHHH---HhCCCEEEEeCcChHHHHhhh--HhhccCcCcccccccCcHHHHHHHHHHHHHHHHHHCCC
Confidence 1 1112 334444433 356999999999876543221 22345556666777789999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 286 LYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 286 ~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
+|++|+|+.++++.++++| +.+|+++|||||+.+.
T Consensus 228 lhi~HiSt~~~v~~i~~~k--~~~vt~ev~phhL~l~ 262 (438)
T PRK07575 228 LHILHLSTAIEAELLRQDK--PSWVTAEVTPQHLLLN 262 (438)
T ss_pred EEEEECCCHHHHHHHHHhc--CCCEEEEEchhhheeC
Confidence 9999999999999998877 5789999999997655
No 23
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=99.96 E-value=3.1e-28 Score=229.10 Aligned_cols=233 Identities=23% Similarity=0.267 Sum_probs=172.3
Q ss_pred cEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHH
Q 020079 54 KILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (331)
Q Consensus 54 ~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~ 131 (331)
+++|+|++|+++.+ ...++|.|+||+|++|++... +.+.++||++|++|+|||||+|+|+..+. .. + ...
T Consensus 1 d~~i~n~~v~~~~~~~~~~~~i~I~~g~I~~i~~~~~-~~~~~~iD~~G~~v~PG~iD~H~H~~~~~--~~--~---~~~ 72 (415)
T cd01297 1 DLVIRNGTVVDGTGAPPFTADVGIRDGRIAAIGPILS-TSAREVIDAAGLVVAPGFIDVHTHYDGQV--FW--D---PDL 72 (415)
T ss_pred CEEEECCEEECCCCCccccceEEEECCEEEEEecCCC-CCCCeEEECCCCEEccCEeeeeecCCccc--cc--C---cch
Confidence 37899999999765 467899999999999987543 23468999999999999999999998752 11 1 236
Q ss_pred HHHHhCCceEEecCcCC---CCCcH------H-----------------HHHHHHHHHh-cc-ceeecc---cccccc--
Q 020079 132 AAALAGGTTMHIDFVIP---INGSL------T-----------------AGFEAYEKKA-KN-SCMDYG---FHMAIT-- 178 (331)
Q Consensus 132 ~~~l~~GvTtv~d~~~~---~~~~~------~-----------------~~~~~~~~~~-~~-~~~~~~---~~~~~~-- 178 (331)
+.++.+||||++++... .+... . +.++.+.+.. .. ..+++. ++....
T Consensus 73 ~~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~l~~~ 152 (415)
T cd01297 73 RPSSRQGVTTVVLGNCGVSPAPANPDDLARLIMLMEGLVALGEGLPWGWATFAEYLDALEARPPAVNVAALVGHAALRRA 152 (415)
T ss_pred hhHHhCcEEEEEeccccCccCCCChhhhhhhhhhhhcccccccccCCCCCCHHHHHHHHHhcCCCcCeeeccCcHHHHHH
Confidence 67889999999987541 11110 0 2233333333 22 356655 443332
Q ss_pred -------CCChhhHHHHHHHHH---HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHH
Q 020079 179 -------KWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRM 248 (331)
Q Consensus 179 -------~~~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~ 248 (331)
..+++.++++.++++ +.|+.+++.++.+......+++++.++++.|+++|.++.+|+++....
T Consensus 153 ~~g~~~~~~~~~~~~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~------- 225 (415)
T cd01297 153 VMGLDAREATEEELAKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEGDS------- 225 (415)
T ss_pred HhCcCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECccccc-------
Confidence 123345666666652 469989987765432235689999999999999999999999875421
Q ss_pred HHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHH---------HHHHHHHHHcCCCEEEecCCccc
Q 020079 249 IELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDA---------MEEIAKARKAGPNFLNTTIPLCD 319 (331)
Q Consensus 249 ~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~---------~~~i~~~~~~Gi~v~~~~~p~~~ 319 (331)
|..++++.+.+++..|.++|++|+++... ++.+++++++|++|++++|||+.
T Consensus 226 -------------------e~~av~~~~~~a~~~g~r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~ 286 (415)
T cd01297 226 -------------------ILEALDELLRLGRETGRPVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYPYGA 286 (415)
T ss_pred -------------------HHHHHHHHHHHHHHhCCCEEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCC
Confidence 24678888999999999999999998777 89999999999999999999887
Q ss_pred c
Q 020079 320 S 320 (331)
Q Consensus 320 ~ 320 (331)
.
T Consensus 287 ~ 287 (415)
T cd01297 287 G 287 (415)
T ss_pred C
Confidence 7
No 24
>PRK06687 chlorohydrolase; Validated
Probab=99.95 E-value=8.7e-27 Score=219.92 Aligned_cols=264 Identities=18% Similarity=0.153 Sum_probs=176.4
Q ss_pred EEEECcEEEeCCC----ceeeeEEEeCCEEEEeeCCCCC--CCCceEEeCCCCeeecccccccccccCCCCC--------
Q 020079 55 ILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-------- 120 (331)
Q Consensus 55 ~~i~n~~i~~~~~----~~~~~v~i~~g~I~~ig~~~~~--~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~-------- 120 (331)
.+|+|++|++++. .++++|+|+||+|++||+.... +...++||++|++|+|||||+|+|+.+....
T Consensus 2 ~~~~n~~vvt~d~~~~~~~~g~VlV~~g~I~aVg~~~~~~~~~~~~viD~~g~~v~PGlIn~H~H~~~~~~rg~~~~~~~ 81 (419)
T PRK06687 2 KVFQHVNIVTCDQDFHVYLDGILAVKDSQIVYVGQDKPAFLEQAEQIIDYQGAWIMPGLVNCHTHSAMTGLRGIRDDSNL 81 (419)
T ss_pred cceEeeEEEEeCCCceEecCcEEEEECCEEEEecCcccccccccCeEEeCCCCEEccceeeeccCCCccccccccCCCCH
Confidence 5799999999774 3579999999999999985432 2346899999999999999999999876421
Q ss_pred -------------CCChhhHHH----HHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccCCChh
Q 020079 121 -------------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEV 183 (331)
Q Consensus 121 -------------~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (331)
..+++..+. +...++++||||+.|+...........++...+.+.+..+...+.........+
T Consensus 82 ~~wl~~~~~~~~~~~~~~~~~~~~~~a~~e~l~~GvTTv~d~~~~~~~~~~~~~~a~~~~Gir~~~~~~~~~~~~~~~~~ 161 (419)
T PRK06687 82 HEWLNDYIWPAESEFTPDMTTNAVKEALTEMLQSGTTTFNDMYNPNGVDIQQIYQVVKTSKMRCYFSPTLFSSETETTAE 161 (419)
T ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCcceeehhhccccccHHHHHHHHHHhCCceEeccccccCCcccHHH
Confidence 112333333 234458999999999864322234455566666665544333222111122233
Q ss_pred hHHHHHHHHHH---hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH--------HHHHHc
Q 020079 184 VSDEMEVMVKE---KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ--------KRMIEL 251 (331)
Q Consensus 184 ~~~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~--------~~~~~~ 251 (331)
..++..++.++ .+...++.++.++.+++++++.++++++.|+++|+++++|+ |+..+..... +++.+.
T Consensus 162 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~i~~H~~e~~~e~~~~~~~~g~~~~~~l~~~ 241 (419)
T PRK06687 162 TISRTRSIIDEILKYKNPNFKVMVAPHSPYSCSRDLLEASLEMAKELNIPLHVHVAETKEESGIILKRYGKRPLAFLEEL 241 (419)
T ss_pred HHHHHHHHHHHHhccCCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHCcCHHHHHHHc
Confidence 34444454432 23455888999999999999999999999999999999996 6655544332 347788
Q ss_pred CCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecC-Cccccchhhh
Q 020079 252 GITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTI-PLCDSCSNII 325 (331)
Q Consensus 252 G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~-p~~~~~~~~~ 325 (331)
|++++.....+..... +++++++++.|+. ++||+.. .++..+++++++|++|+.+|. +..+...++.
T Consensus 242 g~l~~~~~~~H~~~~~-----~~~~~~la~~g~~--v~~~P~sn~~l~~g~~p~~~~~~~Gv~v~lGtD~~~~~~~~~~~ 314 (419)
T PRK06687 242 GYLDHPSVFAHGVELN-----EREIERLASSQVA--IAHNPISNLKLASGIAPIIQLQKAGVAVGIATDSVASNNNLDMF 314 (419)
T ss_pred CCCCCCeEEEEEecCC-----HHHHHHHHHcCCe--EEECcHHhhhhccCCCcHHHHHHCCCeEEEeCCCCCCCCChhHH
Confidence 8888754333322111 2346777777765 6676642 345678999999999998876 3334433333
No 25
>PRK09061 D-glutamate deacylase; Validated
Probab=99.95 E-value=2.1e-26 Score=220.84 Aligned_cols=232 Identities=19% Similarity=0.206 Sum_probs=168.3
Q ss_pred ccEEEECcEEEeCCCc--eeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHH
Q 020079 53 SKILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSG 130 (331)
Q Consensus 53 ~~~~i~n~~i~~~~~~--~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~ 130 (331)
.+++|+|++|++++.. ..++|.|+||+|++|++... .+.++||++|++|+|||||+|+|...+ + .
T Consensus 19 ~~~li~~~~vid~~~~~~~~~~v~I~~G~I~~ig~~~~--~~~~viD~~g~~v~PG~ID~H~H~~~~--~---------~ 85 (509)
T PRK09061 19 YDLVIRNGRVVDPETGLDAVRDVGIKGGKIAAVGTAAI--EGDRTIDATGLVVAPGFIDLHAHGQSV--A---------A 85 (509)
T ss_pred CCEEEECcEEEeCCCCeeccceEEEECCEEEEecCCCC--CCCeEEeCCCCEEecCeEeeeeCCCCC--c---------c
Confidence 5689999999997653 45799999999999997532 346899999999999999999998654 1 1
Q ss_pred HHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeecccccccc-------C------------------------
Q 020079 131 QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT-------K------------------------ 179 (331)
Q Consensus 131 ~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~------------------------ 179 (331)
.+.++.+||||++++.. ......+.++...+.. ..+++.++.+.. .
T Consensus 86 ~~~~~~~GvTtvv~~~~-~~~p~~~~~~~~~~~~--~~vn~~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (509)
T PRK09061 86 YRMQAFDGVTTALELEA-GVLPVARWYAEQAGEG--RPLNYGASVGWTPARIAVLTGPQAEGTIADFGKALGDPRWQERA 162 (509)
T ss_pred chhhccCCceeEEeecc-CCCCHHHHHHHHHhcC--CcceeehhcCcHHHHHHHhCCcccccccccccccccccccccCC
Confidence 45568899999999731 1112222232222211 224443322221 0
Q ss_pred CChhhHHHHHHHHH---HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCc
Q 020079 180 WDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGP 256 (331)
Q Consensus 180 ~~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~ 256 (331)
.+.+.++++.++.+ +.|+.+++.+..+. +..+.+++.++++.|+++|.++.+|+++.....
T Consensus 163 ~t~~el~~m~~ll~~al~~Ga~gis~~~~y~--p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~~-------------- 226 (509)
T PRK09061 163 ATPAELAEILELLEQGLDEGALGIGIGAGYA--PGTGHKEYLELARLAARAGVPTYTHVRYLSNVD-------------- 226 (509)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEecCCccC--CCCCHHHHHHHHHHHHHcCCEEEEEecCcccCC--------------
Confidence 11344556666653 47999988654432 245889999999999999999999997654310
Q ss_pred ccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC------HHHHHHHHHHHHcCCCEEEecCCccccchhh
Q 020079 257 EGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS------MDAMEEIAKARKAGPNFLNTTIPLCDSCSNI 324 (331)
Q Consensus 257 ~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~------~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~~ 324 (331)
...|..++++.+.+++..|.++|++|+++ ...++.++++|++|++|++++|||+..++.+
T Consensus 227 --------~~~e~~av~~~i~lA~~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~~~~t~~ 292 (509)
T PRK09061 227 --------PRSSVDAYQELIAAAAETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPYGAGSTVV 292 (509)
T ss_pred --------chhHHHHHHHHHHHHHHhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCcchhhhhh
Confidence 12345678999999999999999999998 7888999999999999999999999665554
No 26
>PRK04250 dihydroorotase; Provisional
Probab=99.95 E-value=2.5e-26 Score=214.02 Aligned_cols=230 Identities=22% Similarity=0.249 Sum_probs=166.5
Q ss_pred CcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHHHHhCC
Q 020079 59 GGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGG 138 (331)
Q Consensus 59 n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~G 138 (331)
++++++.....+++|+|+||+|++|++.. .++.++||++|++|+|||||+|+|+..+ +....+++.+..+.++++|
T Consensus 3 ~~~v~~~~~~~~~~i~i~~G~I~~i~~~~--~~~~~~iD~~g~~v~PG~ID~HvH~~~~--~~~~~e~~~~~~~aa~~gG 78 (398)
T PRK04250 3 EGKFLLKGRIVEGGIGIENGRISKISLRD--LKGKEVIKVKGGIILPGLIDVHVHLRDF--EESYKETIESGTKAALHGG 78 (398)
T ss_pred eEEEEECCcEEEEEEEEECCEEEEeeCCC--CCCCeEEECCCCEEccCEEeccccccCC--CCCcHHHHHHHHHHHHhCC
Confidence 46777766666899999999999997411 1245899999999999999999999665 5567889999999999999
Q ss_pred ceEEecCcCCCCC-cHHHHHHHHHHHhc-cceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHH
Q 020079 139 TTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDEL 216 (331)
Q Consensus 139 vTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~ 216 (331)
|||++||.+..+. ...+.+....+... .+.+++.++. .... ...++.++. . ..+|.|+.+... ....+.
T Consensus 79 vTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~---~~~~l~~l~-~---~~~k~f~~~~~~-~~~~~~ 149 (398)
T PRK04250 79 ITLVFDMPNTKPPIMDEKTYEKRMRIAEKKSYADYALNF-LIAG---NCEKAEEIK-A---DFYKIFMGASTG-GIFSEN 149 (398)
T ss_pred eEEEEECCCCCCCCCcHHHHHHHHHHhCcCceeeEEEEE-ecCC---CHHHHHHHH-h---hheEEEEecCCC-chhHHH
Confidence 9999999754433 45555655555543 4678888776 3322 223344443 1 246777644211 112222
Q ss_pred HHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHH
Q 020079 217 LIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDA 296 (331)
Q Consensus 217 l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~ 296 (331)
+... . .+.+..+.+|+|+.+... + ...+|...|..++.+.+.++...|+++|++|+|+.++
T Consensus 150 ~~~~--~-~~~~~~v~~H~E~~~~~~---------~-------~~~~p~~aE~~av~r~~~la~~~~~~lhi~HvSt~~~ 210 (398)
T PRK04250 150 FEVD--Y-ACAPGIVSVHAEDPELIR---------E-------FPERPPEAEVVAIERALEAGKKLKKPLHICHISTKDG 210 (398)
T ss_pred HHHH--H-HhcCCeEEEEecChhhhh---------c-------ccCCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHH
Confidence 2221 2 233567999999876532 1 1247899999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCC-EEEecCCccccchh
Q 020079 297 MEEIAKARKAGPN-FLNTTIPLCDSCSN 323 (331)
Q Consensus 297 ~~~i~~~~~~Gi~-v~~~~~p~~~~~~~ 323 (331)
++.++ ++|++ |+++|||||+.++.
T Consensus 211 ~~~i~---~~g~~~vt~Ev~ph~L~l~~ 235 (398)
T PRK04250 211 LKLIL---KSNLPWVSFEVTPHHLFLTR 235 (398)
T ss_pred HHHHH---HcCCCcEEEEeCHHHhccCH
Confidence 88875 35997 99999999998764
No 27
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=99.95 E-value=1.7e-26 Score=218.32 Aligned_cols=269 Identities=17% Similarity=0.163 Sum_probs=178.8
Q ss_pred cEEEECcEEEeCCC----ceeeeEEEeCCEEEEeeCCCC--CCCCceEEeCCCCeeecccccccccccCCCCC-------
Q 020079 54 KILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNIN--VGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG------- 120 (331)
Q Consensus 54 ~~~i~n~~i~~~~~----~~~~~v~i~~g~I~~ig~~~~--~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~------- 120 (331)
+++|+|++|++++. .++++|+|+||+|++||+... ..++.++||++|++|||||||+|+|+.+.+..
T Consensus 2 ~~li~~~~v~t~~~~~~~~~~g~V~i~~g~I~~vg~~~~~~~~~~~~viD~~g~~i~PGlVn~H~H~~~~~~rg~~~~~~ 81 (435)
T PRK15493 2 KTTYVNATIVTMNEQNEVIENGYIIVENDQIIDVNSGEFASDFEVDEVIDMKGKWVLPGLVNTHTHVVMSLLRGIGDDML 81 (435)
T ss_pred eEEEEccEEEEeCCCCcEecCcEEEEECCEEEEEcCccccccCCCCeEEeCCCCEEccceeecccCccchhhhccCCCCC
Confidence 47999999998663 368899999999999998532 22356899999999999999999999764211
Q ss_pred --------------CCChhhHHH----HHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc-cccCCC
Q 020079 121 --------------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-AITKWD 181 (331)
Q Consensus 121 --------------~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 181 (331)
..++++.+. +..+++++||||+.|+............+...+.+.|..+...... +.....
T Consensus 82 l~~wl~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~ 161 (435)
T PRK15493 82 LQPWLETRIWPLESQFTPELAVASTELGLLEMVKSGTTSFSDMFNPIGVDQDAIMETVSRSGMRAAVSRTLFSFGTKEDE 161 (435)
T ss_pred HHHHHHhchhhchhcCCHHHHHHHHHHHHHHHHhCCccEEEccccccccCHHHHHHHHHHcCCcEEEeeeecCCCCCccH
Confidence 112333322 3345689999999998643322223445556666666544322111 111112
Q ss_pred hhhHHHHHHHHHHh-C-CCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH--------HHHHH
Q 020079 182 EVVSDEMEVMVKEK-G-INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ--------KRMIE 250 (331)
Q Consensus 182 ~~~~~~~~~~~~~~-g-~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~--------~~~~~ 250 (331)
.+..++..++.++. + ...++..+.++.+++++++.++++++.|+++|+++++|+ |+..+..... +++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~t~s~e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~g~~~~~~l~~ 241 (435)
T PRK15493 162 KKAIEEAEKYVKRYYNESGMLTTMVAPHSPYTCSTELLEECARIAVENQTMVHIHLSETEREVRDIEAQYGKRPVEYAAS 241 (435)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 23334444444332 2 345888899999999999999999999999999999996 7766655443 45778
Q ss_pred cCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC-----HHHHHHHHHHHHcCCCEEEecC-Cccccchhh
Q 020079 251 LGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS-----MDAMEEIAKARKAGPNFLNTTI-PLCDSCSNI 324 (331)
Q Consensus 251 ~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~-----~~~~~~i~~~~~~Gi~v~~~~~-p~~~~~~~~ 324 (331)
.|++++.....+..... ++.++++++.|+. ++||+. ..++..++++.++|++|+.+|. +..+...++
T Consensus 242 ~Gll~~~~~~~H~~~l~-----~~d~~~la~~g~~--v~~~P~sn~~l~~g~~p~~~~~~~Gv~v~lGtD~~~~~~~~d~ 314 (435)
T PRK15493 242 CGLFKRPTVIAHGVVLN-----DNERAFLAEHDVR--VAHNPNSNLKLGSGIANVKAMLEAGIKVGIATDSVASNNNLDM 314 (435)
T ss_pred cCCCCCCcEEEEeecCC-----HHHHHHHHHcCCe--EEEChHHHHHHhcCcccHHHHHHCCCeEEEccCccccCCCcCH
Confidence 89888765444433222 2345677777775 666654 2345678999999999998875 334444455
Q ss_pred hhhhc
Q 020079 325 IRMVE 329 (331)
Q Consensus 325 ~~~~~ 329 (331)
.+.|.
T Consensus 315 ~~~~~ 319 (435)
T PRK15493 315 FEEMR 319 (435)
T ss_pred HHHHH
Confidence 44443
No 28
>PRK01211 dihydroorotase; Provisional
Probab=99.95 E-value=1.7e-26 Score=215.13 Aligned_cols=233 Identities=20% Similarity=0.262 Sum_probs=168.0
Q ss_pred EECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHHHHh
Q 020079 57 IKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALA 136 (331)
Q Consensus 57 i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~ 136 (331)
|.|.- +..+....++|+|+||+|++|++... +.++||++| +|+|||||+|+|+..+ +...+|+++++.+++++
T Consensus 3 ~~~~~-~~~~~~~~~di~I~dGkI~~i~~~~~---~~~~ida~g-~vlPG~ID~HvH~r~p--g~~~ked~~s~s~AAaa 75 (409)
T PRK01211 3 ICGNF-YYKGKFDYLEIEVEDGKIKSIKKDAG---NIGKKELKG-AILPAATDIHVHFRTP--GETEKEDFSTGTLSAIF 75 (409)
T ss_pred eecee-EEcCcEEEEEEEEECCEEEEecCCCC---CceEEEecc-EEcCCeEEeeeccCCC--CCcccCcHHHHHHHHHc
Confidence 44433 33344567899999999999987542 357999999 9999999999999998 77889999999999999
Q ss_pred CCceEEecCcCCCCC-cHHHHHHHHHHHhc-cceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCH
Q 020079 137 GGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMIND 214 (331)
Q Consensus 137 ~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~ 214 (331)
+||||++||.+..+. ...+.+....+... .+.+++.++......+. + +. +.|+.++|+|+++... ....
T Consensus 76 GGvTtv~dmPnt~P~~~~~e~~~~~~~~a~~~s~vd~~~~~~~~~~~~----~---~~-~~g~~~~k~f~~~~~~-~~~~ 146 (409)
T PRK01211 76 GGTTFIMDMPNNNIPIKDYNAFSDKLGRVAPKAYVDFSLYSMETGNNA----L---IL-DERSIGLKVYMGGTTN-TNGT 146 (409)
T ss_pred CCcEEEEECCCCCCCCChHHHHHHHHHHhccCceeeEEEEeccCCchh----h---HH-hccCcEEEEEcCCCcC-CCcc
Confidence 999999999764333 55666666555543 36788887765532221 1 22 3488899988753110 0000
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH
Q 020079 215 ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM 294 (331)
Q Consensus 215 ~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~ 294 (331)
......++.+++.|.++.+|+|+.+...... ...+ ....+...+|...|..++.+.+.++.+ ++|++|+++.
T Consensus 147 ~~~~~~l~~~~~~g~~v~~H~E~~~l~~~~~---~~~~--~~~~~~~~rP~~aE~~ai~~~~~la~~---~~hi~HvSt~ 218 (409)
T PRK01211 147 DIEGGEIKKINEANIPVFFHAELSECLRKHQ---FESK--NLRDHDLARPIECEIKAVKYVKNLDLK---TKIIAHVSSI 218 (409)
T ss_pred ccCHHHHHHHHccCCEEEEeccChHHhhhhh---hCcc--hHhhCCCCCCHHHHHHHHHHHHHHhCC---CcEEEEecCh
Confidence 1122344666789999999999877654321 1111 112345568999999999999999886 6999999998
Q ss_pred HHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079 295 DAMEEIAKARKAGPNFLNTTIPLCDSCSN 323 (331)
Q Consensus 295 ~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~ 323 (331)
+++ + +|+++|||||+.+..
T Consensus 219 ~~~---------~-~vt~Ev~phhL~l~~ 237 (409)
T PRK01211 219 DVI---------G-RFLREVTPHHLLLND 237 (409)
T ss_pred hhc---------C-ceEEEecHHHHcccc
Confidence 775 2 899999999999874
No 29
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=99.94 E-value=4.1e-25 Score=205.33 Aligned_cols=221 Identities=25% Similarity=0.227 Sum_probs=171.0
Q ss_pred ceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhcc-ceee
Q 020079 93 VKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCMD 170 (331)
Q Consensus 93 ~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~ 170 (331)
.++||++|++|+||+||+|+|+..+ +....+++.++.++++.+||||++||....+. ...+.+...++.... ...+
T Consensus 2 ~~~iD~~g~~vlPG~iD~HvH~~~~--~~~~~e~~~s~s~aA~~GGvTtii~~p~~~p~~~~~~~~~~~~~~~~~~~~~~ 79 (374)
T cd01317 2 AEVIDAEGKILAPGLVDLHVHLREP--GFEYKETLESGAKAAAAGGFTTVVCMPNTNPVIDNPAVVELLKNRAKDVGIVR 79 (374)
T ss_pred CeEEECCCCEEecCEEeeccccCCC--CccccchHHHHHHHHHhCCCcEEEECCCCCCCCCCHHHHHHHHHHhccCCcee
Confidence 4789999999999999999999887 55668899999999999999999999765433 455566665555443 4555
Q ss_pred ccccccccCCC-hhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHH
Q 020079 171 YGFHMAITKWD-EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMI 249 (331)
Q Consensus 171 ~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~ 249 (331)
+.++.+..... .+.++++..+. ..|+..+|.+ .....+...+.++++.+++.|.++.+|+|+.+.... ...
T Consensus 80 ~~~~~~~~~~~~~~~~~~i~~l~-~~G~~~~k~~----~~~~~~~~~l~~~~~~~~~~g~~v~~H~E~~~~~~~---~~~ 151 (374)
T cd01317 80 VLPIGALTKGLKGEELTEIGELL-EAGAVGFSDD----GKPIQDAELLRRALEYAAMLDLPIIVHPEDPSLAGG---GVM 151 (374)
T ss_pred EEEEEEEeeCCCcccHHHHHHHH-HCCcEEEEcC----CcCCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhc---cCc
Confidence 55555544332 22466777776 6788888742 122357888999999999999999999998765431 122
Q ss_pred HcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079 250 ELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN 323 (331)
Q Consensus 250 ~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~ 323 (331)
..|......+...+|...|..++.+.+.+++++++++|++|+++..+++.++++++.|+.+++++||||+.+..
T Consensus 152 ~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~~~~i~i~h~ss~~~l~~i~~~~~~G~~~~~e~~~h~L~ld~ 225 (374)
T cd01317 152 NEGKVASRLGLPGIPPEAETIMVARDLELAEATGARVHFQHLSTARSLELIRKAKAKGLPVTAEVTPHHLLLDD 225 (374)
T ss_pred cCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHCCCCEEEEecHHHHhcCH
Confidence 33433444555568888888899999999999999999999999999999999999999999999999986543
No 30
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=99.93 E-value=3.6e-24 Score=202.93 Aligned_cols=255 Identities=24% Similarity=0.272 Sum_probs=172.5
Q ss_pred EEEECcEEEeCCC----ceeeeEEEeCCEEEEeeCCCCC---CCCceEEeCCCCeeecccccccccccCCCC-C------
Q 020079 55 ILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G------ 120 (331)
Q Consensus 55 ~~i~n~~i~~~~~----~~~~~v~i~~g~I~~ig~~~~~---~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~------ 120 (331)
++|+|++|++.+. ..+++|+|+||+|++||+.... .++.++||++|++|+|||||+|+|+.+... +
T Consensus 1 ~li~~~~i~t~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~~~~~id~~g~~v~PG~vd~H~H~~~~~~rg~~~d~~ 80 (441)
T TIGR03314 1 LLIGNGTAVQLDPTRPIQEGGDIAIDGDVIKAVGPTEELKQKYPEATFIDAKGKLIMPGFINTHNHFYSTFARGMMADIP 80 (441)
T ss_pred CEEECCEEEecCCCCceEeccEEEEECCEEEEEcCchhhcccCCCCeEEeCCCCEEecCeeecccchhhhhhccccccCC
Confidence 3789999997542 3578999999999999985321 134578999999999999999999976421 1
Q ss_pred ------------------CCChhhHHHH----HHHHHhCCceEEecCcCCCC---CcHHHHHHHHHHHhccceeeccccc
Q 020079 121 ------------------SETIDDFFSG----QAAALAGGTTMHIDFVIPIN---GSLTAGFEAYEKKAKNSCMDYGFHM 175 (331)
Q Consensus 121 ------------------~~~~~~~~~~----~~~~l~~GvTtv~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (331)
..++++.+.+ ..+++++||||+.|+..... .......++..+.+.|..+.+.+..
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~ 160 (441)
T TIGR03314 81 PPPDFISILKNLWWRLDRALTLEDVYYSGLICSLDAIKSGCTTVIDHHASPNAITGSLSTIRKAADEAGLRTMLCYETSD 160 (441)
T ss_pred CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHHHcCCeEEEecccccccccchHHHHHHHHHHhCCeEEEeeeeec
Confidence 0122333322 23468999999999864322 1233445666666666555433321
Q ss_pred ccc-CCChhhHHHHHHHHHH-hC--CCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH-----
Q 020079 176 AIT-KWDEVVSDEMEVMVKE-KG--INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ----- 245 (331)
Q Consensus 176 ~~~-~~~~~~~~~~~~~~~~-~g--~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~----- 245 (331)
... ....+.+++..++.++ .+ ...++..++++++++++++.++++.+.|+++|+++++|+ |+..+.....
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~p~~~~t~s~~~l~~~~~lA~~~~~~i~~H~~E~~~e~~~~~~~~g~ 240 (441)
T TIGR03314 161 RDGGKEMQEGVEENIAFIKKSSGKEPYLVEAHIGAHAPFTVSDAGLEMCREAVQATGRGFHIHVAEDIYDVEDSHHKYGK 240 (441)
T ss_pred CCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHcCC
Confidence 110 1112223333334322 22 235778889999999999999999999999999999996 8777766543
Q ss_pred ---HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecCC
Q 020079 246 ---KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTIP 316 (331)
Q Consensus 246 ---~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~p 316 (331)
+++.+.|++++.....+..... +++++++.+.|+. ++||+.. .++..+++++++|++|+.+|.-
T Consensus 241 ~~~~~l~~~G~l~~~~~~~H~~~~~-----~~d~~~la~~g~~--v~~cP~sn~~l~~G~~p~~~~~~~Gv~v~LGtD~ 312 (441)
T TIGR03314 241 DIVERLADFGLLGSKTLAAHCIYLS-----DREIELLNETDTF--VVHNPESNMGNAVGYNPVLRMFKNGILLGLGTDG 312 (441)
T ss_pred CHHHHHHHCCCCCCCeEEEEEecCC-----HHHHHHHHHcCCc--EEECHHHHhhhccCCCCHHHHHHCCCEEEEcCCC
Confidence 5688999999876444433222 2356778888875 6666632 3567899999999999988864
No 31
>PRK00369 pyrC dihydroorotase; Provisional
Probab=99.93 E-value=5.4e-24 Score=197.38 Aligned_cols=211 Identities=20% Similarity=0.170 Sum_probs=152.7
Q ss_pred eeeeEEEeCCEEEEeeCCCCCCCCceEEeC-CCCeeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcC
Q 020079 69 QIADVYVEDGIVVAVQPNINVGDDVKVLDA-TGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVI 147 (331)
Q Consensus 69 ~~~~v~i~~g~I~~ig~~~~~~~~~~~id~-~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~ 147 (331)
.+..|.+++|+|..|++.. +.+.++||+ +|++|+|||||+|+|+..+ |...+|+++++.++++++||||++||.+
T Consensus 12 ~~~~~~~~~~~~~~i~~~~--~~~~~~id~~~G~~vlPG~ID~HvH~r~p--g~~~~ed~~sgs~AAa~GGvTtv~~mPn 87 (392)
T PRK00369 12 GKEIKEICINFDRRIKEIK--SRCKPDLDLPQGTLILPGAIDLHVHLRGL--KLSYKEDVASGTSEAAYGGVTLVADMPN 87 (392)
T ss_pred CCceEEEeeeeeeeEeecc--CCCCceeecCCCCEEeCCEEEcccccCCC--CCcccccHHHHHHHHHhCCcEEEEECCC
Confidence 3567788999999998752 336789999 6999999999999999998 7788999999999999999999999976
Q ss_pred CCCC-cHHHHHHHHHHHhc-cceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHH
Q 020079 148 PING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCK 225 (331)
Q Consensus 148 ~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~ 225 (331)
..+. ...+.++...+... .+.+++.++...... .+++ . ..|+.++|.|.+. ..+.+ +++.+.
T Consensus 88 t~P~~~~~~~l~~~~~~a~~~~~vd~~~~~~~~~~----~~el---~-~~~~~g~k~f~~~----~~~~~----~~~~~~ 151 (392)
T PRK00369 88 TIPPLNTPEAITEKLAELEYYSRVDYFVYSGVTKD----PEKV---D-KLPIAGYKIFPED----LEREE----TFRVLL 151 (392)
T ss_pred CCCCCChHHHHHHHHHHhCcCCeEEEEEEeeccCC----HHHH---H-HhhCceEEEECCC----CchHH----HHHHHH
Confidence 5443 55666666655553 467888877654321 1233 2 3467788887421 11223 344445
Q ss_pred HcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHH
Q 020079 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARK 305 (331)
Q Consensus 226 ~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~ 305 (331)
+++.++.+|+|+.+..... ....+|...|..++.+...+ .++|++|+|+.++ ++++|+
T Consensus 152 ~~~~~v~~HaE~~~l~~~~--------------~~~~rp~~aE~~ai~~~~~~-----~~lhi~HvSt~~~---v~~ak~ 209 (392)
T PRK00369 152 KSRKLKILHPEVPLALKSN--------------RKLRRNCWYEIAALYYVKDY-----QNVHITHASNPRT---VRLAKE 209 (392)
T ss_pred HhCCEEEEeCCCHHHhhcc--------------hhcccCHHHHHHHHHHHHHh-----CCEEEEECCCHHH---HHHHHH
Confidence 5669999999987654311 11236667777665555444 8999999999876 456788
Q ss_pred cCCCEEEecCCccccchh
Q 020079 306 AGPNFLNTTIPLCDSCSN 323 (331)
Q Consensus 306 ~Gi~v~~~~~p~~~~~~~ 323 (331)
+| |+++|||||+.+..
T Consensus 210 ~g--vt~Ev~pHhL~l~~ 225 (392)
T PRK00369 210 LG--FTVDITPHHLLVNG 225 (392)
T ss_pred CC--CeEEechhHheecc
Confidence 87 88999999999864
No 32
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=99.93 E-value=4.3e-24 Score=196.82 Aligned_cols=204 Identities=27% Similarity=0.358 Sum_probs=158.5
Q ss_pred CCeeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccceeeccccccc
Q 020079 100 GKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAI 177 (331)
Q Consensus 100 g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~ 177 (331)
|++|+||+||+|+|+..+ +...+|++.++.++++++||||++||.+..+. ...+.++...+.. ..+.+++.++...
T Consensus 1 G~~vlPG~iD~HvH~r~p--g~~~~ed~~s~t~aA~~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~~ 78 (361)
T cd01318 1 GLLILPGVIDIHVHFREP--GLTYKEDFVSGSRAAAAGGVTTVMDMPNTKPPTTTAEALYEKLRLAAAKSVVDYGLYFGV 78 (361)
T ss_pred CCEEecCeeEeeecCCCC--CCCccCcHHHHHHHHHcCCCEEEEECCCCCCCCCcHHHHHHHHHHhccCceeEEEEEEee
Confidence 789999999999999987 77789999999999999999999999765433 4556666555554 3467888877664
Q ss_pred cCCChhhHHHHHHHHHHhCCCeEEEEEecCC-CCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCc
Q 020079 178 TKWDEVVSDEMEVMVKEKGINSFKFFMAYKG-SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGP 256 (331)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~-~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~ 256 (331)
... +++.++. +.|+.++|.|+.+.. ....+...+.++++.++ .++.+|+|+.+............+
T Consensus 79 ~~~-----~~l~~~~-~~~~~g~k~f~~~~~~~~~~~~~~l~~~~~~~~---~~v~~H~E~~~l~~~~~~~~~~~~---- 145 (361)
T cd01318 79 TGS-----EDLEELD-KAPPAGYKIFMGDSTGDLLDDEETLERIFAEGS---VLVTFHAEDEDRLRENRKELKGES---- 145 (361)
T ss_pred cCh-----hhHHHHH-HhhCcEEEEEEecCCCCcCCCHHHHHHHHHhcC---CeEEEeCCChHHHHHHHhhhhhcc----
Confidence 332 3455555 567888998875321 12257788888888774 789999999876554433332222
Q ss_pred ccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 257 EGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 257 ~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
.+...+|...|..++.+.+.+++..|.++|++|+++.++++.++++| .+|++++||||+.+.
T Consensus 146 -~~~~~~P~~aE~~av~r~~~la~~~~~~~hi~Hvs~~~~~~~i~~~k---~~vt~ev~ph~L~l~ 207 (361)
T cd01318 146 -AHPRIRDAEAAAVATARALKLARRHGARLHICHVSTPEELKLIKKAK---PGVTVEVTPHHLFLD 207 (361)
T ss_pred -CCCCcCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHHhC---CCeEEEeCHHHhhcC
Confidence 45566899999999999999999999999999999999999999888 689999999998665
No 33
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=99.93 E-value=1.2e-23 Score=199.88 Aligned_cols=256 Identities=22% Similarity=0.240 Sum_probs=169.9
Q ss_pred EEEECcEEEeCCC----ceeeeEEEeCCEEEEeeCCCCC---CCCceEEeCCCCeeecccccccccccCCCC-C------
Q 020079 55 ILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G------ 120 (331)
Q Consensus 55 ~~i~n~~i~~~~~----~~~~~v~i~~g~I~~ig~~~~~---~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~------ 120 (331)
++|+|++|++.+. .++++|+|+||+|++||+.... .++.++||++|++|+|||||+|+|+.+.+. +
T Consensus 2 ~li~~~~i~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~~~~~~~~viD~~g~lv~PGfID~H~H~~~~~~rg~~~~~~ 81 (442)
T PRK07203 2 LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELKAKYPDAEFIDAKGKLIMPGLINSHNHIYSGLARGMMANIP 81 (442)
T ss_pred EEEECCEEEeCCCCCceeeccEEEEECCEEEEEeCchhhccccCCCeEEeCCCCEEecceeeccccchhhhhcccccccC
Confidence 6899999998543 2478999999999999964221 134589999999999999999999875421 1
Q ss_pred ------------------CCChhhHHHH----HHHHHhCCceEEecCcCCCC--C-cHHHHHHHHHHHhccceeeccccc
Q 020079 121 ------------------SETIDDFFSG----QAAALAGGTTMHIDFVIPIN--G-SLTAGFEAYEKKAKNSCMDYGFHM 175 (331)
Q Consensus 121 ------------------~~~~~~~~~~----~~~~l~~GvTtv~d~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~ 175 (331)
..++++++.. ...++++||||++|+..... . ......+...+.+.+..+.+....
T Consensus 82 ~~~~l~~~l~~~~~~~~~~~t~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~d 161 (442)
T PRK07203 82 PPPDFISILKNLWWRLDRALTLEDVYYSALICSLEAIKNGVTTVFDHHASPNYIGGSLFTIADAAKKVGLRAMLCYETSD 161 (442)
T ss_pred CCCCHHHHHHhheehhhhcCCHHHHHHHHHHHHHHHHHcCceEEEccccccccccchHHHHHHHHHHhCCeEEEeccccc
Confidence 1123333322 24568899999999853221 1 222334445555555433322211
Q ss_pred cc-cCCChhhHHHHHHHHHHh-C--CCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH-----
Q 020079 176 AI-TKWDEVVSDEMEVMVKEK-G--INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ----- 245 (331)
Q Consensus 176 ~~-~~~~~~~~~~~~~~~~~~-g--~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~----- 245 (331)
.. .....+.+++..++++.. + ...+..++++++++.++++.++++.+.|+++|+++++|+ |+..+.....
T Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s~~~l~~~~~lA~~~g~~i~~H~~E~~~e~~~~~~~~g~ 241 (442)
T PRK07203 162 RDGEKELQEGVEENIRFIKHIDEAKDDMVEAMFGLHASFTLSDATLEKCREAVKETGRGYHIHVAEGIYDVSDSHKKYGK 241 (442)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCCCceEEEEccCCCcCcCHHHHHHHHHHHHHcCCcEEEEecCChHHHHHHHHHcCC
Confidence 10 011122233333433221 1 225777888999999999999999999999999999996 7777766544
Q ss_pred ---HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecCCc
Q 020079 246 ---KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTIPL 317 (331)
Q Consensus 246 ---~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~p~ 317 (331)
+++.+.|++++.....+..... +++++++++.|+. ++||+.. .++..+++++++|++|+.+|.-+
T Consensus 242 ~~v~~l~~~Gll~~~~~~~H~~~~~-----~~d~~~la~~g~~--v~~~P~sn~~l~~g~~p~~~~~~~Gv~v~lGtD~~ 314 (442)
T PRK07203 242 DIVERLADFGLLGEKTLAAHCIYLS-----DEEIDLLKETDTF--VVHNPESNMGNAVGYNPVLEMIKNGILLGLGTDGY 314 (442)
T ss_pred CHHHHHHhCCCCCCCcEEEEeecCC-----HHHHHHHHhcCCe--EEECchhhhhcccCCCCHHHHHHCCCeEEEcCCCC
Confidence 4588999988875444433222 2456777787875 6777643 34678999999999999988743
No 34
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=99.92 E-value=1.1e-23 Score=198.40 Aligned_cols=253 Identities=30% Similarity=0.340 Sum_probs=157.2
Q ss_pred EEEECcEEEeCC---CceeeeEEEeCCEEEEeeCCCCCC--CCceEEeCCCCeeecccccccccccCCCC-C--------
Q 020079 55 ILIKGGTVVNAH---HQQIADVYVEDGIVVAVQPNINVG--DDVKVLDATGKFVMPGGIDPHTHLAMEFM-G-------- 120 (331)
Q Consensus 55 ~~i~n~~i~~~~---~~~~~~v~i~~g~I~~ig~~~~~~--~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~-------- 120 (331)
++|+|++|++++ ..++++|+|+||||++|++....+ ++.++||++|++|+|||||+|+|+.++.. +
T Consensus 1 ~~i~~~~v~~~~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~~viD~~g~~i~PGlid~H~Hl~~~~~~~~~~~~~~~ 80 (411)
T cd01298 1 ILIRNGTIVTTDPRRVLEDGDVLVEDGRIVAVGPALPLPAYPADEVIDAKGKVVMPGLVNTHTHLAMTLLRGLADDLPLM 80 (411)
T ss_pred CeEEeeEEEEeCCcceeecceEEEECCEEEEecCccccccCCcCeEEeCCCCEEccCccccccchhhHHhhcccCCCCHH
Confidence 379999999975 357899999999999999865432 45789999999999999999999975321 1
Q ss_pred ------------CCChhhHHH----HHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeecccccccc---CCC
Q 020079 121 ------------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT---KWD 181 (331)
Q Consensus 121 ------------~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 181 (331)
..++++++. .+..++++||||++|+..... ....+...+.+.+..+...+..... ...
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~---~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~ 157 (411)
T cd01298 81 EWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTTTFADMYFFYP---DAVAEAAEELGIRAVLGRGIMDLGTEDVEET 157 (411)
T ss_pred HHHHhhhhhhhhcCCHHHHHHHHHHHHHHHHhcCccEEECccccch---HHHHHHHHHhCCeEEEEcceecCCCcccccH
Confidence 122344433 334467899999999865432 2333334444444333222211100 111
Q ss_pred hhhHHHHHHHHHH---hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH--------HHHH
Q 020079 182 EVVSDEMEVMVKE---KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ--------KRMI 249 (331)
Q Consensus 182 ~~~~~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~--------~~~~ 249 (331)
.+..+++.++.++ .|.+.+|++++++.+..++++.++++++.|+++|+++.+|+ ++....+... +++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~ 237 (411)
T cd01298 158 EEALAEAERLIREWHGAADGRIRVALAPHAPYTCSDELLREVAELAREYGVPLHIHLAETEDEVEESLEKYGKRPVEYLE 237 (411)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEeCCCCccCCHHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCCHHHHHH
Confidence 2334444444422 24677899888887777899999999999999999999996 6654443222 2234
Q ss_pred HcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH---HHHHHHHHHHHcCCCEEEecC
Q 020079 250 ELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM---DAMEEIAKARKAGPNFLNTTI 315 (331)
Q Consensus 250 ~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~---~~~~~i~~~~~~Gi~v~~~~~ 315 (331)
+.|..+.+....+..... ++.++++++.|+.+..+..++. .....++++.++|+++++++.
T Consensus 238 ~~~~~~~~~~i~H~~~l~-----~~~~~~l~~~gi~~~~~p~~~~~~~~~~~~~~~~~~~Gv~~~~GsD 301 (411)
T cd01298 238 ELGLLGPDVVLAHCVWLT-----DEEIELLAETGTGVAHNPASNMKLASGIAPVPEMLEAGVNVGLGTD 301 (411)
T ss_pred HcCCCCCCeEEEEecCCC-----HHHHHHHHHcCCeEEEChHHhhhhhhCCCCHHHHHHCCCcEEEeCC
Confidence 455554432111111111 1235566666765443332211 123467888889999887654
No 35
>PRK06380 metal-dependent hydrolase; Provisional
Probab=99.92 E-value=2.6e-23 Score=196.27 Aligned_cols=262 Identities=19% Similarity=0.229 Sum_probs=168.2
Q ss_pred cEEEECcEEEeCCC---ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCC----------
Q 020079 54 KILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG---------- 120 (331)
Q Consensus 54 ~~~i~n~~i~~~~~---~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~---------- 120 (331)
+++|+|++|++.+. ..+++|+|+||+|++||+... ...++||++|++|+|||||+|+|+.+....
T Consensus 2 ~~li~~~~v~~~~~~~~~~~~~v~i~~g~I~~ig~~~~--~~~~viD~~g~~v~PG~Vd~H~Hl~~~~~rg~~~~~~l~~ 79 (418)
T PRK06380 2 SILIKNAWIVTQNEKREILQGNVYIEGNKIVYVGDVNE--EADYIIDATGKVVMPGLINTHAHVGMTASKGLFDDVDLEE 79 (418)
T ss_pred eEEEEeeEEEECCCCceeeeeeEEEECCEEEEecCCCC--CCCEEEECCCCEEccCEEeeccCCCccccCCcccCCCHHH
Confidence 37899999998753 458899999999999998543 245899999999999999999999875321
Q ss_pred ----------CCChhhHHH----HHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeecccccc-ccCCChhhH
Q 020079 121 ----------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMA-ITKWDEVVS 185 (331)
Q Consensus 121 ----------~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 185 (331)
..++++++. +...++++||||+.|+... .....+...+.+.+..+.+..... .........
T Consensus 80 ~~~~~~~~~~~~~~e~~~~~~~~~~~e~l~~G~Tt~~d~~~~----~~~~~~a~~~~G~r~~~~~~~~~~~~~~~~~~~~ 155 (418)
T PRK06380 80 FLMKTFKYDSKRTREGIYNSAKLGMYEMINSGITAFVDLYYS----EDIIAKAAEELGIRAFLSWAVLDEEITTQKGDPL 155 (418)
T ss_pred HHHHHHhhhhcCCHHHHHHHHHHHHHHHHhcCCeEEEccccC----hHHHHHHHHHhCCeEEEecccccCCcccccchHH
Confidence 123333332 3345689999999998632 223344555556554443322111 000111122
Q ss_pred HHHHHHHHH-hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH--------HHHHHcCCCC
Q 020079 186 DEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ--------KRMIELGITG 255 (331)
Q Consensus 186 ~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~--------~~~~~~G~~~ 255 (331)
++..++.++ .+...++..+++++.+.++++.++++++.|+++|+++++|+ |+..+..... +++.+.|.++
T Consensus 156 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~ie~~~~~g~l~ 235 (418)
T PRK06380 156 NNAENFIREHRNEELVTPSIGVQGIYVANDETYLKAKEIAEKYDTIMHMHLSETRKEVYDHVKRTGERPVEHLEKIGFLN 235 (418)
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCccCCHHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHhCCCHHHHHHHCCCCC
Confidence 233333322 22345677778888889999999999999999999999997 5544443222 4567777777
Q ss_pred cccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----H-HHHHHHHHHHcCCCEEEecCC-ccccchhhhhhh
Q 020079 256 PEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----D-AMEEIAKARKAGPNFLNTTIP-LCDSCSNIIRMV 328 (331)
Q Consensus 256 ~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~-~~~~i~~~~~~Gi~v~~~~~p-~~~~~~~~~~~~ 328 (331)
++....+..... .+.++++.+.|+. ++||+.. . ....+++++++|++|+.++.- ..+...++...|
T Consensus 236 ~~~~~~H~~~l~-----~~d~~~la~~g~~--v~~~P~sn~~l~~~g~~p~~~~~~~Gv~v~lGTD~~~~~~~~d~~~~~ 308 (418)
T PRK06380 236 SKLIAAHCVWAT-----YHEIKLLSKNGVK--VSWNSVSNFKLGTGGSPPIPEMLDNGINVTIGTDSNGSNNSLDMFEAM 308 (418)
T ss_pred CCeEEEEeecCC-----HHHHHHHHHcCCE--EEECHHHHHhhccCCCCcHHHHHHCCCeEEEcCCCCcCCCCcCHHHHH
Confidence 664333322221 1346677777765 5665532 1 356789999999999988863 233334443333
No 36
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=99.92 E-value=2.3e-23 Score=198.25 Aligned_cols=253 Identities=22% Similarity=0.246 Sum_probs=163.0
Q ss_pred cEEEECcEEEeCCC---ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCC-CC--------
Q 020079 54 KILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS-------- 121 (331)
Q Consensus 54 ~~~i~n~~i~~~~~---~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~~-------- 121 (331)
+++|+|++|+++++ .++++|+|+||+|++|++....++..++||++|++|+|||||+|+|+.+++. +.
T Consensus 2 ~~~i~~~~vi~~~~~~~~~~g~V~I~dg~I~~vg~~~~~~~~~~vID~~G~~vlPGlId~H~H~~~~~~~g~~~~~~~~~ 81 (445)
T PRK07228 2 TILIKNAGIVTMNAKREIVDGDVLIEDDRIAAVGDRLDLEDYDDHIDATGKVVIPGLIQGHIHLCQTLFRGIADDLELLD 81 (445)
T ss_pred eEEEEccEEEecCCCcEecccEEEEECCEEEEecCCcccCcCCeEEeCCCCEEecCEEecccCCccccceeccCCCCHHH
Confidence 48999999999763 5789999999999999986543335789999999999999999999987532 11
Q ss_pred ------------CChhhHH----HHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc-------ccc
Q 020079 122 ------------ETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-------AIT 178 (331)
Q Consensus 122 ------------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 178 (331)
.++++.+ .+...++++||||++|+..... ....++...+.+.+......+.. ...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~a~~~~~e~L~~GvTtv~d~~~~~~--~~~~~~a~~~~g~r~~~~~~~~~~~~~~p~~~~ 159 (445)
T PRK07228 82 WLKDRIWPLEAAHDAESMYYSALLGIGELIESGTTTIVDMESVHH--TDSAFEAAGESGIRAVLGKVMMDYGDDVPEGLQ 159 (445)
T ss_pred HHHhhhhhhhhhCCHHHHHHHHHHHHHHHHhcCceEEEccccccC--hHHHHHHHHHcCCeEEEecceecCCcCCCcccc
Confidence 1122222 2234567899999999864321 23344555555544322211110 011
Q ss_pred CCChhhHHHHHHHHHHh-CCC--eEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH--------H
Q 020079 179 KWDEVVSDEMEVMVKEK-GIN--SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ--------K 246 (331)
Q Consensus 179 ~~~~~~~~~~~~~~~~~-g~~--~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~--------~ 246 (331)
....+.+++..++++.. |.. .+...+.++....++++.++++++.|+++|+++++|+ |+..+.+... +
T Consensus 160 ~~~~~~l~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~ 239 (445)
T PRK07228 160 EDTEASLAESVRLLEKWHGADNGRIRYAFTPRFAVSCTEELLRGVRDLADEYGVRIHTHASENRGEIETVEEETGMRNIH 239 (445)
T ss_pred ccHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHH
Confidence 11223344555555332 432 3444456666677899999999999999999999997 6665554332 3
Q ss_pred HHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecC
Q 020079 247 RMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTI 315 (331)
Q Consensus 247 ~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~ 315 (331)
++.+.|+++++....+..... ++.++++++.|+. ++||+.. .....++++.+.|++++.++.
T Consensus 240 ~l~~~g~~~~~~~l~H~~~~~-----~~~~~~~~~~g~~--v~~~P~~~~~~~~~~~p~~~~~~~Gv~v~lGtD 306 (445)
T PRK07228 240 YLDEVGLTGEDLILAHCVWLD-----EEEREILAETGTH--VTHCPSSNLKLASGIAPVPDLLERGINVALGAD 306 (445)
T ss_pred HHHHCCCCCCCcEEEEEecCC-----HHHHHHHHHcCCe--EEEChHHhhhcccccCcHHHHHHCCCeEEEcCC
Confidence 456677777654443322111 2235666777765 5566542 345678999999999988764
No 37
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=99.92 E-value=2e-23 Score=198.84 Aligned_cols=254 Identities=19% Similarity=0.152 Sum_probs=167.6
Q ss_pred EEEECcEEEeCCC----ceeeeEEEeCCEEEEeeCCCCCC-CCceEEeCCCCeeecccccccccccCCCCC-C-------
Q 020079 55 ILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFMG-S------- 121 (331)
Q Consensus 55 ~~i~n~~i~~~~~----~~~~~v~i~~g~I~~ig~~~~~~-~~~~~id~~g~~v~PG~ID~H~H~~~~~~~-~------- 121 (331)
+++.|+.|+++++ ..+++|+|+||+|++|++..+.+ ++.++||+.|++|||||||+|+|+.+.+.. .
T Consensus 4 ~i~~~~~v~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~~~~~~vID~~g~~v~PGlVn~H~H~~~~~~~g~~~~~~~~ 83 (451)
T PRK08203 4 WIKNPLAIVTMDAARREIADGGLVVEGGRIVEVGPGGALPQPADEVFDARGHVVTPGLVNTHHHFYQTLTRALPAAQDAE 83 (451)
T ss_pred EEEeccEEEEeCCCceEeeccEEEEECCEEEEEeCCccCCCCCCeEEeCCCCEEecceEeccccccchhcccccccCCCc
Confidence 4556678998774 46889999999999999965432 356899999999999999999999875221 1
Q ss_pred --------------CChhhHH----HHHHHHHhCCceEEecCcCCCCC----cHHHHHHHHHHHhccceeecccc-----
Q 020079 122 --------------ETIDDFF----SGQAAALAGGTTMHIDFVIPING----SLTAGFEAYEKKAKNSCMDYGFH----- 174 (331)
Q Consensus 122 --------------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~----- 174 (331)
.++++.+ .+...++++||||++|+....+. .....++...+.+.|..+.....
T Consensus 84 ~~~~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~~~~~~ 163 (451)
T PRK08203 84 LFPWLTTLYPVWARLTPEMVRVATQTALAELLLSGCTTSSDHHYLFPNGLRDALDDQIEAAREIGMRFHATRGSMSLGES 163 (451)
T ss_pred HHHHHHHHhHHHHhCCHHHHHHHHHHHHHHHHhcCcCEEEcceeeccccccchHHHHHHHHHHcCCeEEEecceeecCCc
Confidence 1122322 23345688999999998633221 24455666667766644322110
Q ss_pred -c--cc---cCCChhhHHHHHHHHHHh-C---CCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHH
Q 020079 175 -M--AI---TKWDEVVSDEMEVMVKEK-G---INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFE 243 (331)
Q Consensus 175 -~--~~---~~~~~~~~~~~~~~~~~~-g---~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~ 243 (331)
. .. ....++.++..+++.++. + ...++..++++.++.++++.++++++.|+++|+++++|+ |...+...
T Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~ 243 (451)
T PRK08203 164 DGGLPPDSVVEDEDAILADSQRLIDRYHDPGPGAMLRIALAPCSPFSVSRELMRESAALARRLGVRLHTHLAETLDEEAF 243 (451)
T ss_pred cCCCCccccccCHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHH
Confidence 0 00 011223445555555331 1 146788888888888999999999999999999999996 66655444
Q ss_pred HH--------HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCE
Q 020079 244 GQ--------KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNF 310 (331)
Q Consensus 244 ~~--------~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v 310 (331)
.. +++.+.|+++++....+..... ++.++++++.|+. ++||+.. .....++.++++|++|
T Consensus 244 ~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~l~-----~~~~~~la~~g~~--v~~~P~~~~~l~~~~~~~~~~~~~Gv~v 316 (451)
T PRK08203 244 CLERFGMRPVDYLEDLGWLGPDVWLAHCVHLD-----DAEIARLARTGTG--VAHCPCSNMRLASGIAPVRELRAAGVPV 316 (451)
T ss_pred HHHHhCCCHHHHHHHcCCCCCCeEEEEEeCCC-----HHHHHHHHhcCCe--EEECcHHhhhhccCCCCHHHHHHCCCeE
Confidence 33 4567888888765333322111 2246677777776 5566542 2345688999999999
Q ss_pred EEecC
Q 020079 311 LNTTI 315 (331)
Q Consensus 311 ~~~~~ 315 (331)
+.++.
T Consensus 317 ~lGtD 321 (451)
T PRK08203 317 GLGVD 321 (451)
T ss_pred EEecC
Confidence 98775
No 38
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=99.92 E-value=8.7e-24 Score=193.47 Aligned_cols=180 Identities=36% Similarity=0.405 Sum_probs=145.0
Q ss_pred CeeecccccccccccCCCCCCC-ChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccceeeccccccc
Q 020079 101 KFVMPGGIDPHTHLAMEFMGSE-TIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAI 177 (331)
Q Consensus 101 ~~v~PG~ID~H~H~~~~~~~~~-~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~ 177 (331)
++|+||+||+|+|+..+ +.. .++++.++.++++++||||++||.+..+. ...+.++...+.. ..+.+++.++...
T Consensus 1 ~~vlPG~iD~HvH~r~p--g~~~~~e~~~t~t~aA~~GG~Ttv~~mpn~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~ 78 (337)
T cd01302 1 LLVLPGFIDIHVHLRDP--GGTTYKEDFESGSRAAAAGGVTTVIDMPNTGPPPIDLPAIELKIKLAEESSYVDFSFHAGI 78 (337)
T ss_pred CEecCCeeEeeeccCCC--CCCCchhHHHHHHHHHHhCCCcEEEECCCCCCCCCcHHHHHHHHHHhCcCcEeeEEEEEec
Confidence 57999999999999987 555 78999999999999999999999765443 3455555544443 3467888877665
Q ss_pred cCCChhhHHHHHHHHHHhCCCeEEEEEecCCCC--cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCC
Q 020079 178 TKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSF--MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITG 255 (331)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~--~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~ 255 (331)
... +..+++.++. +.|+.++|.|+.+.... ..+++.+.++++.+++.|+++.+|+|
T Consensus 79 ~~~--~~~~el~~l~-~~Gv~g~K~f~~~~~~~~~~~~~~~l~~~~~~~~~~g~~v~~H~E------------------- 136 (337)
T cd01302 79 GPG--DVTDELKKLF-DAGINSLKVFMNYYFGELFDVDDGTLMRTFLEIASRGGPVMVHAE------------------- 136 (337)
T ss_pred cCc--cCHHHHHHHH-HcCCcEEEEEEeccCCCccccCHHHHHHHHHHHHhcCCeEEEeHH-------------------
Confidence 442 2456777776 68999999998653221 56888999999999999999999988
Q ss_pred cccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 256 PEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 256 ~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
+.+.+++..|.++|++|+++.++++.++++|++|++|++++||||+.+.
T Consensus 137 ------------------r~~~la~~~g~~l~i~Hiss~~~le~i~~ak~~g~~vt~ev~ph~L~l~ 185 (337)
T cd01302 137 ------------------RAAQLAEEAGANVHIAHVSSGEALELIKFAKNKGVKVTCEVCPHHLFLD 185 (337)
T ss_pred ------------------HHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHCCCcEEEEcChhhheeC
Confidence 1245777789999999999999999999999999999999999998765
No 39
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=99.92 E-value=3.8e-23 Score=196.42 Aligned_cols=252 Identities=21% Similarity=0.208 Sum_probs=165.9
Q ss_pred ccEEEECcEEEeCCC----ceeeeEEEeCCEEEEeeCCCCC---CCCceEEeCCCCeeecccccccccccCCCC-CC---
Q 020079 53 SKILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS--- 121 (331)
Q Consensus 53 ~~~~i~n~~i~~~~~----~~~~~v~i~~g~I~~ig~~~~~---~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~~--- 121 (331)
.+++|+|++|++++. .++++|+|+||+|++||+.... .++.++||++|++|||||||+|+|+.+... +.
T Consensus 7 ~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~~~~~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~~g~~~~ 86 (443)
T PRK09045 7 VDLLIEARWIVPVEPAGVVLEDHAVAIRDGRIVAILPRAEARARYAAAETVELPDHVLIPGLINAHTHAAMSLLRGLADD 86 (443)
T ss_pred ccEEEEccEEEEeCCCceEeeccEEEEECCEEEEecCcccccccCCcceEEeCCCCEEecCEeccccChhhHhhhhccCC
Confidence 579999999998662 3688999999999999986432 135689999999999999999999976421 10
Q ss_pred ------------------CChhhHH----HHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc-c--
Q 020079 122 ------------------ETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-A-- 176 (331)
Q Consensus 122 ------------------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-- 176 (331)
.+++..+ .....++++||||++|+... .....+...+.+.+..+...... +
T Consensus 87 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~G~Ttv~d~~~~----~~~~~~~~~~~G~R~~~~~~~~~~~~~ 162 (443)
T PRK09045 87 LPLMTWLQDHIWPAEGAWVSEEFVRDGTLLAIAEMLRGGTTCFNDMYFF----PEAAAEAAHQAGMRAQIGMPVLDFPTA 162 (443)
T ss_pred CCHHHHHHhhhhhhhhccCCHHHHHHHHHHHHHHHHhcCCcEEEecccc----HHHHHHHHHHcCCeEEEecccccCCCc
Confidence 1122222 23345689999999997521 12234444555555433322111 1
Q ss_pred ccCCChhhHHHHHHHHHH-hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH--------H
Q 020079 177 ITKWDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ--------K 246 (331)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~--------~ 246 (331)
.....++.+++..++.++ .+.+.++..+.++.++.++++.++++++.|+++|+++++|+ ++..+..... +
T Consensus 163 ~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~ 242 (443)
T PRK09045 163 WASDADEYLAKGLELHDQWRHHPLISTAFAPHAPYTVSDENLERIRTLAEQLDLPIHIHLHETAQEIADSLKQHGQRPLA 242 (443)
T ss_pred cccCHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEeecCcHHHHHHHHHHhCCCHHH
Confidence 111122333333334323 35667888899988889999999999999999999999997 5555544433 3
Q ss_pred HHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecC
Q 020079 247 RMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTI 315 (331)
Q Consensus 247 ~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~ 315 (331)
++.+.|+++++....+..... ++.++++++.|+. ++||+.. .....++++.+.|++++.++.
T Consensus 243 ~l~~~g~l~~r~~~~H~~~l~-----~~~~~~la~~g~~--i~~~P~~~~~~~~~~~~~~~l~~~Gv~v~lGtD 309 (443)
T PRK09045 243 RLARLGLLGPRLIAVHMTQLT-----DAEIALLAETGCS--VVHCPESNLKLASGFCPVAKLLQAGVNVALGTD 309 (443)
T ss_pred HHHHcCCCCCCeEEEEecCCC-----HHHHHHHHHcCCe--EEECHHHHhhhccCCCcHHHHHHCCCeEEEecC
Confidence 467788887754333322111 2245666666764 6676542 234578999999999998775
No 40
>PRK09228 guanine deaminase; Provisional
Probab=99.92 E-value=2.7e-23 Score=196.44 Aligned_cols=251 Identities=20% Similarity=0.146 Sum_probs=161.2
Q ss_pred eeeeEEEeCCEEEEeeCCCCC----CCCceEEeCCCCeeecccccccccccCCCCCC---------------------CC
Q 020079 69 QIADVYVEDGIVVAVQPNINV----GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS---------------------ET 123 (331)
Q Consensus 69 ~~~~v~i~~g~I~~ig~~~~~----~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~---------------------~~ 123 (331)
++++|+|+||+|++||+..+. +.+.++||++|++|+|||||+|+|+.+..... .+
T Consensus 30 ~~g~I~I~~g~I~~Vg~~~~~~~~~~~~~~viD~~g~lv~PGlVn~H~H~~~~~~~g~~~~~l~~wl~~~~~~~e~~~~~ 109 (433)
T PRK09228 30 EDGLLLVEDGRIVAAGPYAELRAQLPADAEVTDYRGKLILPGFIDTHIHYPQTDMIASYGEQLLDWLNTYTFPEERRFAD 109 (433)
T ss_pred CCeEEEEECCEEEEEcChHHhhhhcCCCCeEEeCCCCEEecceecccccccchhhccCCchHHHHHHHhhhhHHHHHhCC
Confidence 478999999999999985321 12358999999999999999999987652110 11
Q ss_pred hhhHHH----HHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc-----cccCCChhhHHHHHHHHHH
Q 020079 124 IDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-----AITKWDEVVSDEMEVMVKE 194 (331)
Q Consensus 124 ~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 194 (331)
++..+. +...++++||||+.|+............+...+.+.+..+.+.+.. .......+.+++..++.++
T Consensus 110 ~~~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 189 (433)
T PRK09228 110 PAYAREVAEFFLDELLRNGTTTALVFGTVHPQSVDALFEAAEARNMRMIAGKVLMDRNAPDGLRDTAESGYDDSKALIER 189 (433)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEEeccccCHHHHHHHHHHHHHcCCeEEeeeeeecCCCCcccccCHHHHHHHHHHHHHH
Confidence 222222 2345689999999997643322333444445555555433322211 0011122233344444433
Q ss_pred -hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc-CCcEEEEc-CCchhhHHHH----------HHHHHcCCCCcccccc
Q 020079 195 -KGINSFKFFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHA-ENGDAVFEGQ----------KRMIELGITGPEGHAL 261 (331)
Q Consensus 195 -~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~-g~~v~~H~-e~~~~~~~~~----------~~~~~~G~~~~~~~~~ 261 (331)
.+...+++.+.++..+.++++.++++.+.|+++ |+++++|+ |+..+.+... +++.+.|+++++....
T Consensus 190 ~~~~~~~~~~~~p~~~~t~s~~~l~~~~~lA~~~~~~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~l~~~G~l~~~~~~~ 269 (433)
T PRK09228 190 WHGKGRLLYAITPRFAPTSTPEQLEAAGALAREHPDVWIQTHLSENLDEIAWVKELFPEARDYLDVYERYGLLGPRAVFA 269 (433)
T ss_pred HhCCCCceEEEECCcCCcCCHHHHHHHHHHHHHCCCCceEEeecCChhHHHHHHHHcCCCCCHHHHHHHcCCCCCCeEEE
Confidence 233456777888888899999999999999998 99999996 7777665443 4478888888765544
Q ss_pred cCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecCCccccchhhhh
Q 020079 262 SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTIPLCDSCSNIIR 326 (331)
Q Consensus 262 ~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~~~~ 326 (331)
+..... ++.++++++.|+. ++||+.. .++..+++++++|++++.++.-..+...++.+
T Consensus 270 H~~~l~-----~~~~~~la~~g~~--v~~~P~sn~~lg~g~~~~~~~~~~Gv~v~lGtD~~~~~~~d~~~ 332 (433)
T PRK09228 270 HCIHLE-----DRERRRLAETGAA--IAFCPTSNLFLGSGLFDLKRADAAGVRVGLGTDVGGGTSFSMLQ 332 (433)
T ss_pred eccCCC-----HHHHHHHHHcCCe--EEECCccHHhhcCCCcCHHHHHHCCCeEEEecCCCCCCCCCHHH
Confidence 433222 2346677777775 5566542 34567899999999999887644333334433
No 41
>PRK12393 amidohydrolase; Provisional
Probab=99.92 E-value=6.1e-23 Score=195.40 Aligned_cols=256 Identities=20% Similarity=0.161 Sum_probs=165.0
Q ss_pred CccEEEECcE-EEeCCC----ceee-eEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCC-CC---
Q 020079 52 SSKILIKGGT-VVNAHH----QQIA-DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS--- 121 (331)
Q Consensus 52 ~~~~~i~n~~-i~~~~~----~~~~-~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~~--- 121 (331)
|.+++|+|++ |++.+. ..++ +|+|+||+|++||+. ...++.++||++|++|+|||||+|+|+.+.+. +.
T Consensus 1 ~~~~li~~~~~v~~~~~~~~~~~~~~~v~I~~g~I~~Vg~~-~~~~~~~viD~~g~~v~PG~VnaH~Hl~~~~~rg~~~~ 79 (457)
T PRK12393 1 MPSLLIRNAAAIMTGLPGDAARLGGPDIRIRDGRIAAIGAL-TPLPGERVIDATDCVVYPGWVNTHHHLFQSLLKGVPAG 79 (457)
T ss_pred CCcEEEECCeEEEecCCCccccccCceEEEECCEEEEEecc-CCCCCCeEEeCCCCEEecCEeecccCcccccccccccc
Confidence 3568999996 676543 3444 899999999999983 22345789999999999999999999987531 11
Q ss_pred -------------------CChhhHH----HHHHHHHhCCceEEecCcCCC---C--CcHHHHHHHHHHHhccceeeccc
Q 020079 122 -------------------ETIDDFF----SGQAAALAGGTTMHIDFVIPI---N--GSLTAGFEAYEKKAKNSCMDYGF 173 (331)
Q Consensus 122 -------------------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~ 173 (331)
.++++.+ .+..+++++||||++|+.... . ......+++..+.+.|..+.+..
T Consensus 80 ~~~~~~~wl~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~a~~~~G~R~~~~~~~ 159 (457)
T PRK12393 80 INQSLTAWLAAVPYRFRARFDEDLFRLAARIGLVELLRSGCTTVADHHYLYHPGMPFDTGDILFDEAEALGMRFVLCRGG 159 (457)
T ss_pred cCCchHHHhhhCcchhhhhCCHHHHHHHHHHHHHHHHhCCccEeecchhhcccccccchHHHHHHHHHHcCCeEEEEccc
Confidence 1222222 233456899999999985221 1 12344556666666664433221
Q ss_pred c-------ccc-----cCCChhhHHHHHHHHHHh-C-C--CeEEEEEecCCC-CcCCHHHHHHHHHHHHHcCCcEEEEc-
Q 020079 174 H-------MAI-----TKWDEVVSDEMEVMVKEK-G-I--NSFKFFMAYKGS-FMINDELLIEGFKRCKSLGALAMVHA- 235 (331)
Q Consensus 174 ~-------~~~-----~~~~~~~~~~~~~~~~~~-g-~--~~ik~~~~~~~~-~~~~~~~l~~~~~~A~~~g~~v~~H~- 235 (331)
. ... ....++.+++.+++.+.. + . ..+++.+.++.+ +.++++.++++++.|+++|+++++|+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~a~~~g~~~~~H~~ 239 (457)
T PRK12393 160 ATQTRGDHPGLPTALRPETLDQMLADVERLVSRYHDASPDSLRRVVVAPTTPTFSLPPELLREVARAARGMGLRLHSHLS 239 (457)
T ss_pred cccccccCCCCCCcccccCHHHHHHHHHHHHHHhcCCCcCCceEEEEcCCCCCCCcCHHHHHHHHHHHHHcCCeEEEEeC
Confidence 1 000 001122334444444321 1 1 135566677776 78899999999999999999999997
Q ss_pred CCchhhHHHH--------HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC-----HHHHHHHHH
Q 020079 236 ENGDAVFEGQ--------KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS-----MDAMEEIAK 302 (331)
Q Consensus 236 e~~~~~~~~~--------~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~-----~~~~~~i~~ 302 (331)
|...+.+... +++.+.|++++.....+..... +++++++++.|+. ++||+. ...+..+++
T Consensus 240 e~~~~~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~l~-----~~d~~~la~~g~~--v~~~P~sn~~lg~g~~~~~~ 312 (457)
T PRK12393 240 ETVDYVDFCREKYGMTPVQFVAEHDWLGPDVWFAHLVKLD-----AEEIALLAQTGTG--IAHCPQSNGRLGSGIAPALA 312 (457)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEecCC-----HHHHHHHHHcCCe--EEECchhhhhhcccCCCHHH
Confidence 6665555443 3456778777764333322221 3356777777876 566654 234567899
Q ss_pred HHHcCCCEEEecC
Q 020079 303 ARKAGPNFLNTTI 315 (331)
Q Consensus 303 ~~~~Gi~v~~~~~ 315 (331)
+.++|++|..++.
T Consensus 313 ~~~~Gv~v~lGtD 325 (457)
T PRK12393 313 MEAAGVPVSLGVD 325 (457)
T ss_pred HHHCCCeEEEecC
Confidence 9999999998876
No 42
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=99.92 E-value=2.9e-23 Score=195.01 Aligned_cols=242 Identities=20% Similarity=0.130 Sum_probs=158.2
Q ss_pred eeeeEEEeCCEEEEeeCCCCC----CCCceEEeCCCCeeecccccccccccCCCC-CC--------------------CC
Q 020079 69 QIADVYVEDGIVVAVQPNINV----GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS--------------------ET 123 (331)
Q Consensus 69 ~~~~v~i~~g~I~~ig~~~~~----~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~~--------------------~~ 123 (331)
++++|+|+||+|++||+.... +++.++||++|++|||||||+|+|+.+... +. .+
T Consensus 5 ~~~~V~V~~g~I~~Vg~~~~~~~~~~~~~~viD~~g~~v~PGlId~H~Hl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (401)
T TIGR02967 5 EDGLLVVENGRIVAVGDYAELKETLPAGVEIDDYRGHLIMPGFIDTHIHYPQTEMIASYGEQLLEWLEKYTFPTEARFAD 84 (401)
T ss_pred eceEEEEECCEEEEecCcchhhhccCCCCeEEeCCCCEEecceeecccCchhhhhcccCCchHHHHHhhCcCccccccCC
Confidence 467899999999999985331 234689999999999999999999875321 10 01
Q ss_pred hhhHH----HHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc---cc--cCCChhhHHHHHHHHHH
Q 020079 124 IDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM---AI--TKWDEVVSDEMEVMVKE 194 (331)
Q Consensus 124 ~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~ 194 (331)
++..+ .....++++||||++|+............+...+.+.+......... +. .....+..++.++++++
T Consensus 85 ~~~~~~~a~~~~~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~ 164 (401)
T TIGR02967 85 PDHAEEVAEFFLDELLRNGTTTALVFATVHPESVDALFEAALKRGMRMIAGKVLMDRNAPDYLRDTAESSYDESKALIER 164 (401)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeccccCHHHHHHHHHHHHHCCCeEEEeeeeecCCCCcccccCHHHHHHHHHHHHHH
Confidence 22222 22356789999999998654332233444555555555333221110 10 11112334455555533
Q ss_pred -hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc-CCcEEEEc-CCchhhHHHH----------HHHHHcCCCCcccccc
Q 020079 195 -KGINSFKFFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHA-ENGDAVFEGQ----------KRMIELGITGPEGHAL 261 (331)
Q Consensus 195 -~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~-g~~v~~H~-e~~~~~~~~~----------~~~~~~G~~~~~~~~~ 261 (331)
.+...++..+.++..+.++++.++++++.|+++ |+++++|+ |+..+..... +++.+.|++++.....
T Consensus 165 ~~~~g~i~~~~~~~~~~~~s~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~l~~~g~lg~~~~~~ 244 (401)
T TIGR02967 165 WHGKGRLLYAVTPRFAPTSSPEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKELFPEAKDYLDVYDHYGLLGRRSVFA 244 (401)
T ss_pred HhCcCCceEEEECCcCCcCcHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHcCCCCcHHHHHHHCCCCCCCeEEE
Confidence 344457888888888889999999999999999 99999997 6766655543 4577888887764333
Q ss_pred cCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC-----HHHHHHHHHHHHcCCCEEEecCCc
Q 020079 262 SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS-----MDAMEEIAKARKAGPNFLNTTIPL 317 (331)
Q Consensus 262 ~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~-----~~~~~~i~~~~~~Gi~v~~~~~p~ 317 (331)
+..... ++.++++++.|+. ++||++ ......++++.++|++|+.++.-.
T Consensus 245 H~~~~~-----~~~~~~l~~~g~~--v~~~P~~~~~~~~g~~~~~~~~~~Gv~v~lGtD~~ 298 (401)
T TIGR02967 245 HCIHLS-----DEECQRLAETGAA--IAHCPTSNLFLGSGLFNLKKALEHGVRVGLGTDVG 298 (401)
T ss_pred ecccCC-----HHHHHHHHHcCCe--EEEChHHHHHhccCCCCHHHHHHCCCeEEEecCCC
Confidence 322221 2346777777775 566654 234457889999999999887643
No 43
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=99.91 E-value=4.6e-23 Score=191.45 Aligned_cols=231 Identities=19% Similarity=0.192 Sum_probs=158.1
Q ss_pred ccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeeccccccccccc-C---CCCCC--CChhh
Q 020079 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA-M---EFMGS--ETIDD 126 (331)
Q Consensus 53 ~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~-~---~~~~~--~~~~~ 126 (331)
++++|+|++|++.+...+++|.|+||||++|++... +..++||++|++|+|||||+|+|.. . +..+. ...++
T Consensus 2 ~~~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~--~~~~~iDa~g~~v~PG~ID~H~h~~~~~~~p~~~~~~~~~~~ 79 (383)
T PRK15446 2 MEMILSNARLVLPDEVVDGSLLIEDGRIAAIDPGAS--ALPGAIDAEGDYLLPGLVDLHTDNLEKHLAPRPGVDWPADAA 79 (383)
T ss_pred ccEEEECcEEEcCCCceeeeEEEECCEEEEecCCCC--CCCceEeCCCCEEEeCeEEcccCCcccccCCCCCCccchHHH
Confidence 568999999998776668999999999999998543 2347899999999999999999543 2 32121 22378
Q ss_pred HHHHHHHHHhCCceEEecCcCCC--C--C----cHHHHH-HHHH--HHhccceeeccccccccCCChhhHHHHHHHHHHh
Q 020079 127 FFSGQAAALAGGTTMHIDFVIPI--N--G----SLTAGF-EAYE--KKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEK 195 (331)
Q Consensus 127 ~~~~~~~~l~~GvTtv~d~~~~~--~--~----~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (331)
+..+.++++++||||+.|+.... + . ...+.+ +... ....++.+|+.++......+.+.++++.++. +.
T Consensus 80 ~~~~~~~a~~gG~Tt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~~~h~~~~~~~~~~~~~l~~~~-~~ 158 (383)
T PRK15446 80 LAAHDAQLAAAGITTVFDALSVGDEEDGGLRSRDLARKLIDAIEEARARGLLRADHRLHLRCELTNPDALELFEALL-AH 158 (383)
T ss_pred HHHHHHHHHhCCccEeeeeeEeccCCCCCcccHHHHHHHHHHHHHhhhcCchhccceeEEEEEecCcchHHHHHHHh-cC
Confidence 88999999999999999974221 1 1 122122 2222 2224578899999988876777788898888 78
Q ss_pred CCCeEEEEEecC-CCC-cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHH
Q 020079 196 GINSFKFFMAYK-GSF-MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273 (331)
Q Consensus 196 g~~~ik~~~~~~-~~~-~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~ 273 (331)
|+..+|.|++.. +.. ....+.+++.. +++.| .+|+|..+...... . .|...+.+.++
T Consensus 159 g~~~~k~fm~~~p~~~~~~~~~~~~~~~--~~~~g---~~~~e~~~~~~~~~---~-------------~~~~~~~e~i~ 217 (383)
T PRK15446 159 PRVDLVSLMDHTPGQRQFRDLEKYREYY--AGKYG---LSDEEFDAFVEERI---A-------------LSARYAPPNRR 217 (383)
T ss_pred CCcCEEEEeCCCCccccccCHHHHHHHH--HhhcC---CCHHHHHHHHHHHH---H-------------hHhhcCHHHHH
Confidence 999999998754 211 22344455555 44667 66887765433211 1 13334457788
Q ss_pred HHHHHHHhcCCCEEEEeCC-CHHHHHHHHHHHHcCCCEE
Q 020079 274 RAIRLAEFVNTPLYVVHVM-SMDAMEEIAKARKAGPNFL 311 (331)
Q Consensus 274 ~~~~l~~~~g~~~~i~H~~-~~~~~~~i~~~~~~Gi~v~ 311 (331)
+.++.++.+|.++ .+|.. .. +.++++++.|+.+.
T Consensus 218 ~~v~~A~~~g~~v-~sH~~~~~---~~i~~a~~~Gv~~~ 252 (383)
T PRK15446 218 AIAALARARGIPL-ASHDDDTP---EHVAEAHALGVAIA 252 (383)
T ss_pred HHHHHHHHCCCce-eecCCCCH---HHHHHHHHcCCcee
Confidence 9999999999987 77873 32 33555555555444
No 44
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=99.91 E-value=2.7e-22 Score=189.50 Aligned_cols=264 Identities=23% Similarity=0.262 Sum_probs=170.1
Q ss_pred cEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCC------------
Q 020079 54 KILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM------------ 119 (331)
Q Consensus 54 ~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~------------ 119 (331)
+++|+|++|++++. ..+++|+|+||+|++|++.... +..++||++|++|+|||||+|+|+.+...
T Consensus 2 ~~~i~~~~i~~~~~~~~~~~~i~i~~g~I~~v~~~~~~-~~~~~id~~~~~v~Pg~vd~H~H~~~~~~rg~~~~~~l~~~ 80 (424)
T PRK08393 2 SILIKNGYVIYGENLKVIRADVLIEGNKIVEVKRNINK-PADTVIDASGSVVSPGFINAHTHSPMVLLRGLADDVPLMEW 80 (424)
T ss_pred eEEEECcEEEeCCCCceecceEEEECCEEEEecCCCCC-CCCeEEeCCCCEEccCeeeeccCcchHhhhhccCCCCHHHH
Confidence 47999999999876 3578999999999999985433 34579999999999999999999976421
Q ss_pred ---------CCCChhhHHH----HHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc-cccCCChhhH
Q 020079 120 ---------GSETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-AITKWDEVVS 185 (331)
Q Consensus 120 ---------~~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 185 (331)
...++++++. +...++++||||+.|+.. ...+.++...+.+.+..+.+.... .......+.+
T Consensus 81 l~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~~----~~~~~~~a~~~~G~r~~~~~~~~~~~~~~~~~~~l 156 (424)
T PRK08393 81 LQNYIWPRERKLKRKDIYWGAYLGLLEMIKSGTTTFVDMYF----HMEEVAKATLEVGLRGYLSYGMVDLGDEEKREKEI 156 (424)
T ss_pred HHhhhccccccCCHHHHHHHHHHHHHHHHhcCceEEecccc----CHHHHHHHHHHhCCeEEEeceEecCCCccchHHHH
Confidence 0122334332 345568999999999853 223445555555555444332211 1111112222
Q ss_pred HHHHHHHHH---hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH--------HHHHHcCC
Q 020079 186 DEMEVMVKE---KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ--------KRMIELGI 253 (331)
Q Consensus 186 ~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~--------~~~~~~G~ 253 (331)
++..+..+. .+...+...+.++.++.++++.++++++.|+++|+++++|+ |+..+..... +.+.+.|+
T Consensus 157 ~~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~G~ 236 (424)
T PRK08393 157 KETEKLMEFIEKLNSPRVHFVFGPHAPYTCSLALLKWVREKAREWNKLITIHLSETMDEIKQIREKYGKSPVVLLDEIGF 236 (424)
T ss_pred HHHHHHHHHHhcCCCCceEEEEeCCcCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCcCHHHHHHHcCC
Confidence 222222221 23334566667888888999999999999999999999996 6666555443 34678888
Q ss_pred CCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecC-Cccccchhhhhh
Q 020079 254 TGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTI-PLCDSCSNIIRM 327 (331)
Q Consensus 254 ~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~-p~~~~~~~~~~~ 327 (331)
++++....+..... .++++++.+.|+. ++||+.. .....++++.++|++|+.++. ++.+...++.+.
T Consensus 237 l~~~~~~~H~~~l~-----~~~l~~la~~g~~--v~~~P~sn~~lg~g~~~~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~ 309 (424)
T PRK08393 237 LNEDVIAAHGVWLS-----SRDIRILASAGVT--VAHNPASNMKLGSGVMPLRKLLNAGVNVALGTDGAASNNNLDMLRE 309 (424)
T ss_pred CCCCcEEEEeecCC-----HHHHHHHHhcCCE--EEECHHHHHhhccCCCCHHHHHHCCCcEEEecCCCccCCchhHHHH
Confidence 88764332222111 2345677777764 6777642 234568999999999998885 333333344444
Q ss_pred hc
Q 020079 328 VE 329 (331)
Q Consensus 328 ~~ 329 (331)
|.
T Consensus 310 ~~ 311 (424)
T PRK08393 310 MK 311 (424)
T ss_pred HH
Confidence 43
No 45
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=99.91 E-value=1.1e-22 Score=190.86 Aligned_cols=255 Identities=18% Similarity=0.166 Sum_probs=151.8
Q ss_pred EECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCC---------------
Q 020079 57 IKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS--------------- 121 (331)
Q Consensus 57 i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~--------------- 121 (331)
|+|++|+|+. ..+++|+|+||+|++||+....+++.++||++|++|+|||||+|+|+.+.+...
T Consensus 2 ~~~~~~~~~~-~~~~~v~I~~g~I~~Vg~~~~~~~~~~vID~~g~~v~PGlId~H~H~~~~~~~~~~~~~~~~~~~~~~~ 80 (398)
T cd01293 2 LRNARLADGG-TALVDIAIEDGRIAAIGPALAVPPDAEEVDAKGRLVLPAFVDPHIHLDKTFTGGRWPNNSGGTLLEAII 80 (398)
T ss_pred eeeeEEeCCC-ceEEEEEEECCEEEEEecCCCCCCCCceEeCCCCEEccCEeeeeeccCcccccCCCCCCCccccHHHHH
Confidence 7899999974 578899999999999998754445678999999999999999999997642110
Q ss_pred --------CChhhHH----HHHHHHHhCCceEEecCcCCCCC---cHHHHHHHHH-HHhccceeeccccccccCC-Chhh
Q 020079 122 --------ETIDDFF----SGQAAALAGGTTMHIDFVIPING---SLTAGFEAYE-KKAKNSCMDYGFHMAITKW-DEVV 184 (331)
Q Consensus 122 --------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~ 184 (331)
.++++.+ .....++++||||++++...... ...+...... +...+.............. .++.
T Consensus 81 ~~~~~~~~~t~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (398)
T cd01293 81 AWEERKLLLTAEDVKERAERALELAIAHGTTAIRTHVDVDPAAGLKALEALLELREEWADLIDLQIVAFPQHGLLSTPGG 160 (398)
T ss_pred HHHHHHhccChHHHHHHHHHHHHHHHHcChhheeeeecccccccchHHHHHHHHHHHhhccceEEEEeccCccccCCCCH
Confidence 1222222 23456789999999877543321 1112222221 1111111111000000001 1333
Q ss_pred HHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchh----hHHHHHHHHHcCCCCcccc
Q 020079 185 SDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDA----VFEGQKRMIELGITGPEGH 259 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~----~~~~~~~~~~~G~~~~~~~ 259 (331)
.+.+++.. +.|.+.++.+ .......++++.++++++.|+++|+++++|+ +...+ .....+.+.+.|+. +...
T Consensus 161 ~~~v~~~~-~~g~~~~~~~-~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~g~~-~~~~ 237 (398)
T cd01293 161 EELMREAL-KMGADVVGGI-PPAEIDEDGEESLDTLFELAQEHGLDIDLHLDETDDPGSRTLEELAEEAERRGMQ-GRVT 237 (398)
T ss_pred HHHHHHHH-HhCCCEEeCC-CCCcCCccHHHHHHHHHHHHHHhCCCCEEEeCCCCCcchhHHHHHHHHHHHhCCC-CCEE
Confidence 44455555 4455444322 2222345678999999999999999999997 44332 22234456677765 2222
Q ss_pred cccCChHHH--HHHHHHHHHHHHhcCCCEEEEeCCC------------HHHHHHHHHHHHcCCCEEEecC
Q 020079 260 ALSRPPLLE--GEATTRAIRLAEFVNTPLYVVHVMS------------MDAMEEIAKARKAGPNFLNTTI 315 (331)
Q Consensus 260 ~~~~~~~~e--~~~i~~~~~l~~~~g~~~~i~H~~~------------~~~~~~i~~~~~~Gi~v~~~~~ 315 (331)
..+.....+ .....+.++++++.|+.+..+..++ ......+++++++|++|..+|.
T Consensus 238 i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~~~p~s~~~l~~~~~~~~~~~~~~~~~~~~~~Gv~v~lGTD 307 (398)
T cd01293 238 CSHATALGSLPEAEVSRLADLLAEAGISVVSLPPINLYLQGREDTTPKRRGVTPVKELRAAGVNVALGSD 307 (398)
T ss_pred eeecchhhcCCHHHHHHHHHHHHHcCCeEEeCCCcchhhcccccCCCCCCCCCcHHHHHHCCCeEEECCC
Confidence 222111110 1123456778888887644433333 1345679999999999998775
No 46
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=99.91 E-value=3.3e-22 Score=189.12 Aligned_cols=251 Identities=24% Similarity=0.276 Sum_probs=163.3
Q ss_pred ccEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCC-C---------
Q 020079 53 SKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G--------- 120 (331)
Q Consensus 53 ~~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~--------- 120 (331)
++++|+|++|++++. ..+++|+|+||+|++|++.... +..++||+.|++|+|||||+|+|+.+... +
T Consensus 2 ~~~~~~~~~i~~~~~~~~~~~~v~v~~g~I~~i~~~~~~-~~~~~id~~g~~v~PG~vd~H~H~~~~~~~g~~~~~~~~~ 80 (430)
T PRK06038 2 ADIIIKNAYVLTMDAGDLKKGSVVIEDGTITEVSESTPG-DADTVIDAKGSVVMPGLVNTHTHAAMTLFRGYADDLPLAE 80 (430)
T ss_pred CCEEEEccEEEECCCCeeeccEEEEECCEEEEecCCCCC-CCCEEEeCCCCEEecCeeecccCcchhhhhhccCCCCHHH
Confidence 358999999997653 4578999999999999986432 34579999999999999999999976421 0
Q ss_pred -----------CCChhhHH----HHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc-cccCCChhh
Q 020079 121 -----------SETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-AITKWDEVV 184 (331)
Q Consensus 121 -----------~~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 184 (331)
..++++.+ .....++++||||++|+... .....+...+.+.+....+.... .......+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~~~----~~~~~~a~~~~GiR~~~~~~~~d~~~~~~~~~~ 156 (430)
T PRK06038 81 WLNDHIWPAEAKLTAEDVYAGSLLACLEMIKSGTTSFADMYFY----MDEVAKAVEESGLRAALSYGMIDLGDDEKGEAE 156 (430)
T ss_pred HHHhhhhhchhcCCHHHHHHHHHHHHHHHHhcCceeEEccccC----HHHHHHHHHHhCCeEEEEchhccCCCccchHHH
Confidence 11223332 23445688999999998632 12334444455544333222110 001111223
Q ss_pred HHHHHHHHHHh-C--CCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH--------HHHHHcC
Q 020079 185 SDEMEVMVKEK-G--INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ--------KRMIELG 252 (331)
Q Consensus 185 ~~~~~~~~~~~-g--~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~--------~~~~~~G 252 (331)
+++..++++.. + ...++..++++.+..++++.++++++.|+++|+++++|+ ++..+..... +++.+.|
T Consensus 157 l~~~~~~i~~~~~~~~g~v~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~G~~~i~~l~~~g 236 (430)
T PRK06038 157 LKEGKRFVKEWHGAADGRIKVMYGPHAPYTCSEEFLSKVKKLANKDGVGIHIHVLETEAELNQMKEQYGMCSVNYLDDIG 236 (430)
T ss_pred HHHHHHHHHHhcCCCCCceEEEEeCCcCccCCHHHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHhCCCHHHHHHHcC
Confidence 33444444322 1 235667778888889999999999999999999999997 5554433222 4467888
Q ss_pred CCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecC
Q 020079 253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTI 315 (331)
Q Consensus 253 ~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~ 315 (331)
+++++....+..... ++.++++++.|+. ++||+.. .....++++.++|++|+.++.
T Consensus 237 ~l~~r~~~~H~~~l~-----~~~~~~la~~g~~--v~~~P~~n~~~~~~~~p~~~~~~~Gv~v~lGtD 297 (430)
T PRK06038 237 FLGPDVLAAHCVWLS-----DGDIEILRERGVN--VSHNPVSNMKLASGIAPVPKLLERGVNVSLGTD 297 (430)
T ss_pred CCCCCeEEEEEecCC-----HHHHHHHHhcCCE--EEEChHHhhhhccCCCCHHHHHHCCCeEEEeCC
Confidence 888764333322221 2246777777876 5565532 244578999999999998886
No 47
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=99.90 E-value=2e-22 Score=190.44 Aligned_cols=241 Identities=19% Similarity=0.101 Sum_probs=157.2
Q ss_pred eeeeEEEeCCEEEEeeCCCCC----CCCceEEeCCCCeeecccccccccccCCCC-CC---------------------C
Q 020079 69 QIADVYVEDGIVVAVQPNINV----GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS---------------------E 122 (331)
Q Consensus 69 ~~~~v~i~~g~I~~ig~~~~~----~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~~---------------------~ 122 (331)
++++|+|+||+|++||+.... +++.++||++|++|+|||||+|+|+.+... +. .
T Consensus 25 ~~g~V~v~~g~I~~vG~~~~~~~~~~~~~~viD~~g~~v~PGlVn~H~Hl~~~~~rg~~~~~~l~~wl~~~~~~~e~~~~ 104 (429)
T cd01303 25 EDGLIVVVDGNIIAAGAAETLKRAAKPGARVIDSPNQFILPGFIDTHIHAPQYANIGSGLGEPLLDWLETYTFPEEAKFA 104 (429)
T ss_pred CCeEEEEECCEEEEeCchhhhhhhcCCCceEEcCCCCEEecceeeeeecccccccccccCCCcHHHHHHhhhhHHHHhcC
Confidence 578999999999999985422 235689999999999999999999976421 11 0
Q ss_pred ChhhH----HHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc---cc--cCCChhhHHHHHHHHH
Q 020079 123 TIDDF----FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM---AI--TKWDEVVSDEMEVMVK 193 (331)
Q Consensus 123 ~~~~~----~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~ 193 (331)
+++.. ......++++||||++|+...........+++..+.+.|..+.+.... +. .....+..++..++.+
T Consensus 105 ~~~~~~~~a~~~~~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 184 (429)
T cd01303 105 DPAYAREVYGRFLDELLRNGTTTACYFATIHPESTEALFEEAAKRGQRAIAGKVCMDRNAPEYYRDTAESSYRDTKRLIE 184 (429)
T ss_pred CHHHHHHHHHHHHHHHHhCCceEEEeecccChhHHHHHHHHHHHhCCeEEEeeeeecCCCCcccccCHHHHHHHHHHHHH
Confidence 11122 123345689999999988654332344555666666666444322211 10 0111122333333332
Q ss_pred H-hC-CCeEEEEEecCCCCcCCHHHHHHHHHHHHHcC-CcEEEEc-CCchhhHHHH----------HHHHHcCCCCcccc
Q 020079 194 E-KG-INSFKFFMAYKGSFMINDELLIEGFKRCKSLG-ALAMVHA-ENGDAVFEGQ----------KRMIELGITGPEGH 259 (331)
Q Consensus 194 ~-~g-~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g-~~v~~H~-e~~~~~~~~~----------~~~~~~G~~~~~~~ 259 (331)
+ .+ ...+...++++.++.++++.++++++.|+++| +++++|+ |+..+.+... +++.+.|+++++..
T Consensus 185 ~~~~~~~~v~~~~~p~~~~~~s~e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~~~g~~~~p~~~l~~~G~l~~~~~ 264 (429)
T cd01303 185 RWHGKSGRVKPAITPRFAPSCSEELLAALGKLAKEHPDLHIQTHISENLDEIAWVKELFPGARDYLDVYDKYGLLTEKTV 264 (429)
T ss_pred HHhCcCCceEEEEecCcCCcCCHHHHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHHHcCCCCCHHHHHHHCCCCCCCcE
Confidence 2 22 13567777888888999999999999999999 9999997 7666554443 44677888877644
Q ss_pred cccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC-----HHHHHHHHHHHHcCCCEEEecCC
Q 020079 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS-----MDAMEEIAKARKAGPNFLNTTIP 316 (331)
Q Consensus 260 ~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~-----~~~~~~i~~~~~~Gi~v~~~~~p 316 (331)
..+..... ++.++++++.|+. ++||+. ......++++.++|++|+.++.-
T Consensus 265 l~H~~~l~-----~~~~~~l~~~g~~--v~~~P~sn~~l~~g~~~~~~~~~~Gv~v~lGtD~ 319 (429)
T cd01303 265 LAHCVHLS-----EEEFNLLKERGAS--VAHCPTSNLFLGSGLFDVRKLLDAGIKVGLGTDV 319 (429)
T ss_pred EEeCCCCC-----HHHHHHHHHcCCE--EEECccchhhhccCCCCHHHHHHCCCeEEEeccC
Confidence 43333222 2346677777775 555554 23456789999999999988754
No 48
>PRK08204 hypothetical protein; Provisional
Probab=99.90 E-value=1.8e-22 Score=192.32 Aligned_cols=255 Identities=20% Similarity=0.242 Sum_probs=160.2
Q ss_pred ccEEEECcEEEeCCC----ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCC--------
Q 020079 53 SKILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-------- 120 (331)
Q Consensus 53 ~~~~i~n~~i~~~~~----~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~-------- 120 (331)
.+++|+|++|++.++ ..+++|+|+||+|++|++..+.+ +.++||++|++|+|||||+|+|+.+....
T Consensus 2 ~~~li~~~~v~~~~~~~~~~~~~~v~V~~g~I~~Vg~~~~~~-~~~viD~~g~~v~PGlId~H~H~~~~~~~~~~~~~~~ 80 (449)
T PRK08204 2 KRTLIRGGTVLTMDPAIGDLPRGDILIEGDRIAAVAPSIEAP-DAEVVDARGMIVMPGLVDTHRHTWQSVLRGIGADWTL 80 (449)
T ss_pred CcEEEECcEEEecCCCCCccccceEEEECCEEEEecCCCCCC-CCeEEeCCCCEEecCEEeeeeccchhhhccccCCCcH
Confidence 457899999997553 46889999999999999864433 56899999999999999999998643110
Q ss_pred -------------CCChhhHH----HHHHHHHhCCceEEecCcCCCCC--cHHHHHHHHHHHhccceeecccccccc---
Q 020079 121 -------------SETIDDFF----SGQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKNSCMDYGFHMAIT--- 178 (331)
Q Consensus 121 -------------~~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 178 (331)
..++++.+ .....++++||||++|+...... .....++...+.+.+..+.........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~L~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~G~r~~~~~~~~~~~~~~~ 160 (449)
T PRK08204 81 QTYFREIHGNLGPMFRPEDVYIANLLGALEALDAGVTTLLDWSHINNSPEHADAAIRGLAEAGIRAVFAHGSPGPSPYWP 160 (449)
T ss_pred HHHHHhhcccccccCCHHHHHHHHHHHHHHHHhcCCeEEeecccccCChhHHHHHHHHHHHcCCeEEEEccccCCCCCCC
Confidence 11222222 23356799999999997644321 233444555555544333221111000
Q ss_pred -CCChhhHHHHHHHHHH--hCCC-eEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCch-hhHHHHHHHHHcC
Q 020079 179 -KWDEVVSDEMEVMVKE--KGIN-SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGD-AVFEGQKRMIELG 252 (331)
Q Consensus 179 -~~~~~~~~~~~~~~~~--~g~~-~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~-~~~~~~~~~~~~G 252 (331)
....+...+++.+.++ .+.+ .+.....++++..++++.++++++.|+++|+++++|+ |+.. ......+.+.+.|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~l~~~g 240 (449)
T PRK08204 161 FDSVPHPREDIRRVKKRYFSSDDGLLTLGLAIRGPEFSSWEVARADFRLARELGLPISMHQGFGPWGATPRGVEQLHDAG 240 (449)
T ss_pred cchhhhhHHHHHHHHHhhccCCCCceEEEEecCCcccCCHHHHHHHHHHHHHcCCcEEEEEcCCCcccCCCHHHHHHHCC
Confidence 0111223333333322 2322 3444455666677889999999999999999999997 4432 2223345677888
Q ss_pred CCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecC
Q 020079 253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTI 315 (331)
Q Consensus 253 ~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~ 315 (331)
+.+++....+..... .+.++++.+.|+.+ +||+.. .....++++.++|++|+.++.
T Consensus 241 ~~~~~~~i~H~~~~~-----~~~~~~la~~g~~v--~~~P~~~~~~g~~~~~~~~~~~~Gv~v~lGtD 301 (449)
T PRK08204 241 LLGPDLNLVHGNDLS-----DDELKLLADSGGSF--SVTPEIEMMMGHGYPVTGRLLAHGVRPSLGVD 301 (449)
T ss_pred CCCCCeEEEecCCCC-----HHHHHHHHHcCCCE--EEChHHHhhhcCCCCcHHHHHhcCCceeeccc
Confidence 877664333322221 23466777778764 455432 234568999999999998775
No 49
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=99.90 E-value=2.5e-22 Score=192.69 Aligned_cols=260 Identities=18% Similarity=0.150 Sum_probs=164.2
Q ss_pred cEEEECcEEEeCCC-----ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCC-----C-----
Q 020079 54 KILIKGGTVVNAHH-----QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME-----F----- 118 (331)
Q Consensus 54 ~~~i~n~~i~~~~~-----~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~-----~----- 118 (331)
.++|+|++|++.++ .++++|+|+||+|++||+.... ++.++||+.|++|+|||||+|+|+.+. .
T Consensus 2 ~~li~~~~v~~~d~~~~~~~~~~~VlVe~g~I~~Vg~~~~~-~~~~viD~~g~~vlPGlVdaH~Hl~~~~~~~~~~~~~~ 80 (488)
T PRK06151 2 RTLIKARWVLGFDDGDHRLLRDGEVVFEGDRILFVGHRFDG-EVDRVIDAGNALVGPGFIDLDALSDLDTTILGLDNGPG 80 (488)
T ss_pred eEEEEccEEEEEcCCCCeEEeCcEEEEECCEEEEecCCCCC-CCCeEEeCCCCEEecCEEeeecccchhhhhcccccchh
Confidence 47899999976542 3678999999999999985432 245799999999999999999997521 0
Q ss_pred --CC--------------CCChhhHH----HHHHHHHhCCceEEecCcCCCCC-------cHHHHHHHHHHHhccceeec
Q 020079 119 --MG--------------SETIDDFF----SGQAAALAGGTTMHIDFVIPING-------SLTAGFEAYEKKAKNSCMDY 171 (331)
Q Consensus 119 --~~--------------~~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 171 (331)
.+ ..++++.+ .+...++++||||++|+...... ...+.++...+.+.+..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~t~e~~~~~a~~~~~e~L~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~ 160 (488)
T PRK06151 81 WAKGRVWSRDYVEAGRREMYTPEELAFQKRYAFAQLLRNGITTAMPIASLFYRQWAETYAEFAAAAEAAGRLGLRVYLGP 160 (488)
T ss_pred HHhcccCchhhhhcchhhcCCHHHHHHHHHHHHHHHHhcCeeEEehhhhhhccccccccchHHHHHHHHHHcCCeEEecc
Confidence 00 12333333 23455789999999987532211 12344445555554432221
Q ss_pred cccc------------cccC--CChhhHHHHHHHHH---HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEE
Q 020079 172 GFHM------------AITK--WDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH 234 (331)
Q Consensus 172 ~~~~------------~~~~--~~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H 234 (331)
.+.. .... ...+.+.+..++++ ..|.+.+|..++++....++++.++++++.|+++|+++++|
T Consensus 161 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~i~~~~~p~~~~~~s~e~l~~~~~~A~~~g~~v~~H 240 (488)
T PRK06151 161 AYRSGGSVLEADGSLEVVFDEARGLAGLEEAIAFIKRVDGAHNGLVRGMLAPDRIETCTVDLLRRTAAAARELGCPVRLH 240 (488)
T ss_pred hhccCccccccCCCCCccccchhHHHHHHHHHHHHHHhhcccCCceEEEEcCCCCCCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 1100 0000 01122333344332 24667788888888888899999999999999999999999
Q ss_pred c-CCchhhHHHH--------HHHHHcCCCCccc---ccccCCh-HHHHHHHHHHHHHHHhcCCCEEEEeCCC-----HHH
Q 020079 235 A-ENGDAVFEGQ--------KRMIELGITGPEG---HALSRPP-LLEGEATTRAIRLAEFVNTPLYVVHVMS-----MDA 296 (331)
Q Consensus 235 ~-e~~~~~~~~~--------~~~~~~G~~~~~~---~~~~~~~-~~e~~~i~~~~~l~~~~g~~~~i~H~~~-----~~~ 296 (331)
+ ++..+.+... +++.+.|+++++. |+....+ ..+.....+.++++++.|+. ++||+. ...
T Consensus 241 ~~e~~~~~~~~~~~~g~~~~~~~~~~g~l~~r~~l~H~~~l~~~~~~~~~~~~~~~~la~~g~~--v~~~P~~~~~~g~~ 318 (488)
T PRK06151 241 CAQGVLEVETVRRLHGTTPLEWLADVGLLGPRLLIPHATYISGSPRLNYSGGDDLALLAEHGVS--IVHCPLVSARHGSA 318 (488)
T ss_pred ECCchHHHHHHHHHcCCCHHHHHHHcCCCCCCcEEEEEEEcCCccccccCCHHHHHHHHhcCCE--EEECchhhhhhccc
Confidence 7 6665544332 4466778776653 2322111 00011122456677777765 667653 234
Q ss_pred HHHHHHHHHcCCCEEEecCC
Q 020079 297 MEEIAKARKAGPNFLNTTIP 316 (331)
Q Consensus 297 ~~~i~~~~~~Gi~v~~~~~p 316 (331)
+..++++.++|++|+.++..
T Consensus 319 ~~p~~~l~~~Gv~v~lGtD~ 338 (488)
T PRK06151 319 LNSFDRYREAGINLALGTDT 338 (488)
T ss_pred cccHHHHHHCCCcEEEECCC
Confidence 46789999999999988763
No 50
>PRK08418 chlorohydrolase; Provisional
Probab=99.90 E-value=4.5e-22 Score=186.56 Aligned_cols=260 Identities=13% Similarity=0.048 Sum_probs=160.6
Q ss_pred EEEECcEEEeCCC----ceeeeEEEeCCEEEEeeCCCCC---CCCceEEeCCCCeeecccccccccccCCCC-CC-----
Q 020079 55 ILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS----- 121 (331)
Q Consensus 55 ~~i~n~~i~~~~~----~~~~~v~i~~g~I~~ig~~~~~---~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~~----- 121 (331)
.+|+|++|++++. .++++|+|+ |+|++||+.... .++.++||+.|++|+|||||+|+|+.+... +.
T Consensus 2 ~~i~~~~v~t~~~~~~~~~~~~v~v~-~~I~~ig~~~~~~~~~~~~~vid~~g~~v~PG~Vn~H~H~~~~~~rg~~~~~~ 80 (408)
T PRK08418 2 KIIGASYIFTCDENFEILEDGAVVFD-DKILEIGDYENLKKKYPNAKIQFFKNSVLLPAFINPHTHLEFSANKTTLDYGD 80 (408)
T ss_pred EEEEccEEEecCCCCceeeccEEEEC-CEEEEecCHHHHHhhCCCCcEEecCCcEEccCccccccchhhhhhccccCCCc
Confidence 5789999998762 368899999 999999984221 123468999999999999999999975421 10
Q ss_pred --------------CChhhHH----HHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccCCChh
Q 020079 122 --------------ETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEV 183 (331)
Q Consensus 122 --------------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (331)
.+++..+ .+..+++++||||+.|+.... ...++..+.+.+..+.............+
T Consensus 81 ~~~wl~~~~~~~~~l~~~~~~~~~~~~~~E~l~~GtTtv~d~~~~~-----~~~~a~~~~GiR~~~~~~~~~~~~~~~~~ 155 (408)
T PRK08418 81 FIPWLGSVINHREDLLEKCKGALIQQAINEMLKSGVGTIGAISSFG-----IDLEICAKSPLRVVFFNEILGSNASAVDE 155 (408)
T ss_pred hHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHhcCceEEEEeecch-----hhHHHHHhcCCeEEEEeeeeCCCccchhh
Confidence 1111211 233457899999999886432 12344555555543321111100001011
Q ss_pred hHHHHHHHHHH---hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHHH-------------
Q 020079 184 VSDEMEVMVKE---KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQK------------- 246 (331)
Q Consensus 184 ~~~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~~------------- 246 (331)
..+.+.+..+. ...+.++..++++++++++++.++++.+.|+++|+++++|+ |+..+.++..+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~aph~~~t~s~e~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~~~G~~~~~~~~~~ 235 (408)
T PRK08418 156 LYQDFLARFEESKKFKSKKFIPAIAIHSPYSVHPILAKKALQLAKKENLLVSTHFLESKAEREWLEESKGWFKKFFEKFL 235 (408)
T ss_pred hHHHHHHHHHhhhcccCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHhccCchhhhhhhhc
Confidence 11111111111 12345788889999999999999999999999999999995 77777655432
Q ss_pred -----------HHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCE
Q 020079 247 -----------RMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNF 310 (331)
Q Consensus 247 -----------~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v 310 (331)
++...| ++.....+.... -+++++++++.|+. ++||+.. .+...++++.++|++|
T Consensus 236 ~~~~~~~~pv~~l~~~g--~~~~~~~H~~~~-----~~~di~~la~~g~~--v~~cP~sn~~lg~g~~p~~~~~~~Gi~v 306 (408)
T PRK08418 236 KEPKPLYTPKEFLELFK--GLRTLFTHCVYA-----SEEELEKIKSKNAS--ITHCPFSNRLLSNKALDLEKAKKAGINY 306 (408)
T ss_pred ccccccCCHHHHHHHhC--CCCeEEEecccC-----CHHHHHHHHHcCCc--EEECHhHHHHhcCCCccHHHHHhCCCeE
Confidence 122222 122222222211 13456777777765 6777643 3456789999999999
Q ss_pred EEecC-Cccccchhhhhhhc
Q 020079 311 LNTTI-PLCDSCSNIIRMVE 329 (331)
Q Consensus 311 ~~~~~-p~~~~~~~~~~~~~ 329 (331)
+.+|. +..+....+.+.|+
T Consensus 307 ~lGtD~~~~~~~~~~~~em~ 326 (408)
T PRK08418 307 SIATDGLSSNISLSLLDELR 326 (408)
T ss_pred EEeCCCCCCCCCcCHHHHHH
Confidence 98876 44555555555444
No 51
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=99.89 E-value=3.7e-22 Score=170.27 Aligned_cols=272 Identities=16% Similarity=0.154 Sum_probs=179.0
Q ss_pred CCccEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHH
Q 020079 51 SSSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFF 128 (331)
Q Consensus 51 ~~~~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~ 128 (331)
|+.+++++|++++++.. ....+|.|.||||++++ ..+.+...++||++|.+|.||+||.|+|++.. +.....+.
T Consensus 2 mqfdiLLt~~rlidpa~g~d~~tniai~ngkIaa~~-d~~apa~tq~Ida~Gc~VspG~iDlHvHvy~g--gt~~~v~p- 77 (386)
T COG3964 2 MQFDILLTGGRLIDPARGIDEITNIAIINGKIAAAD-DYPAPAETQIIDADGCIVSPGLIDLHVHVYYG--GTEGGVRP- 77 (386)
T ss_pred CccceeeeCCeecccccccCccceeeeecCeEEecc-CcCCChhheEEccCccEeccCeeeeeeEEecC--CCccCcCH-
Confidence 46789999999998764 45779999999999999 45556668999999999999999999999876 33222222
Q ss_pred HHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhcc---ceeeccccccccCCC------hhhHHHHHHHHHHhC--C
Q 020079 129 SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKN---SCMDYGFHMAITKWD------EVVSDEMEVMVKEKG--I 197 (331)
Q Consensus 129 ~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g--~ 197 (331)
.+....+||||++|.++.+..+.....+...+.... ..++....+ ....+ .-..+++.++.+++. .
T Consensus 78 --d~~ga~~GvTTvVDAGSaGaanf~gF~r~vie~Sr~RI~Aflnvs~~G-l~a~nE~~d~~nid~d~i~aa~reh~d~i 154 (386)
T COG3964 78 --DMYGAPNGVTTVVDAGSAGAANFDGFYRTVIEASRVRIKAFLNVSPPG-LTASNELYDPDNIDEDKIHAAFREHRDVI 154 (386)
T ss_pred --HHccccCCceEEEecCCcCccchhhHHHHhhcchhheeeeeeeccCcc-eeeehhhCChhhCCHHHHHHHHHhCcCcE
Confidence 345688999999999876665554444444444322 233322211 11111 112455666664432 2
Q ss_pred CeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchh-hHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHH
Q 020079 198 NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA-VFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAI 276 (331)
Q Consensus 198 ~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~-~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~ 276 (331)
.++|+-++.+..-.....-++...+.|++.++|+++|..++.. ..+..+.+..-.+...-.++.......+...+....
T Consensus 155 vGlKvR~s~~~~g~~GitPl~la~~ia~~~klPlmvHigePp~~~dEvlerL~~GDIitHcfngkpn~~l~~dg~vr~~v 234 (386)
T COG3964 155 VGLKVRVSTEDIGEYGITPLTLALRIANDLKLPLMVHIGEPPVLMDEVLERLRRGDIITHCFNGKPNTILTDDGVVRAEV 234 (386)
T ss_pred EEEEEEeeeccccccCCchHHHHHHHHhhcCCceEEecCCCCccHHHHHHhccCCceeeeeccCCCCCccccchhHHHHH
Confidence 3567665543222223345667777888999999999854443 355555544433333222333333445556788889
Q ss_pred HHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCC---EEEecC-------Cccccchhhhhhhc
Q 020079 277 RLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPN---FLNTTI-------PLCDSCSNIIRMVE 329 (331)
Q Consensus 277 ~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~---v~~~~~-------p~~~~~~~~~~~~~ 329 (331)
+++.+.|+++.+.|.....+++..+++-+.|+- |+.|.+ |-|...+-|+|+|.
T Consensus 235 rra~erGV~fD~ghG~asfsf~vAr~aia~GllP~~ISSDlh~~~~~n~Pv~dla~~mSKlla 297 (386)
T COG3964 235 RRARERGVIFDAGHGRASFSFNVARRAIANGLLPDIISSDLHTITKLNGPVYDLAWIMSKLLA 297 (386)
T ss_pred HHHHhcceEEEccCCcceeeHHHHHHHHhcCCCcceeeccceeeeecCchHHHHHHHHHHHHH
Confidence 999999999999999888888999999999972 444433 55556666777664
No 52
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=99.89 E-value=1.4e-21 Score=184.26 Aligned_cols=268 Identities=24% Similarity=0.270 Sum_probs=176.4
Q ss_pred cEEEECcEEEeCCC---ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCC-----------
Q 020079 54 KILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM----------- 119 (331)
Q Consensus 54 ~~~i~n~~i~~~~~---~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~----------- 119 (331)
.++++|..++..++ .+++++.|+||+|+.||+....+++.++||++|++|+|||||+|+|+.+...
T Consensus 3 ~~~i~~~~~~~~d~~~~~~~~~~~i~~g~I~~ig~~~~~~~~~~~iD~~~~lv~Pgfvn~H~H~~~t~~~g~~~~~~l~~ 82 (421)
T COG0402 3 MLLIRGDLLLTNDPEGRIEDGDLVIEDGKIVAIGANAEGPPDEEVIDAKGKLVLPGFVNAHTHLDQTLLRGLADDLPLLE 82 (421)
T ss_pred ceeeeCcEEeecCcccceeeeeEEEcCCEEEEeCCcCCCCCCceeecCCCCEeccCccccccchHHHHHhhhhcccchHH
Confidence 36788888887643 2579999999999999997654356789999999999999999999887521
Q ss_pred -----------CCCChhhHHH----HHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc-----cccC
Q 020079 120 -----------GSETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-----AITK 179 (331)
Q Consensus 120 -----------~~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 179 (331)
...++++.+. ....++++|+|+++.+...........++...+.+.+......+.. ....
T Consensus 83 wl~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~t~~~~~~~~~~~~~~~~~~a~~~~g~r~~~~~~~~~~~~p~~~~~ 162 (421)
T COG0402 83 WLERYVWPREARLLTEEDLYARALLALLEMLRNGTTTARTHVDVVAESADAAFEAALEVGLRAVLGPVLQDVAFPDPGAE 162 (421)
T ss_pred HHHHHHhHHHhhcCCHHHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHHHHHHhCCeeEeeeccccCCCCccccc
Confidence 1123444433 3345688999997755444333334456666666655333322221 1111
Q ss_pred CChhhHHHHHHHHHH-hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHHH--------HHH
Q 020079 180 WDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQK--------RMI 249 (331)
Q Consensus 180 ~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~~--------~~~ 249 (331)
..+. +++.+++.++ .+...+.+...++.++.++++.++.+.+.++++|+++++|+ |+.+++.+..+ ++.
T Consensus 163 ~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~~~g~~~~~~~~ 241 (421)
T COG0402 163 TDEE-LEETEELLREAHGLGRDVVGLAPHFPYTVSPELLESLDELARKYGLPVHIHLAETLDEVERVLEPYGARPVERLD 241 (421)
T ss_pred chHH-HHHHHHHHHHHhcCCCeeEEEecCCCCCCCHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHhhcCCCHHHHHH
Confidence 1111 2333343322 34446677778898899999999999999999999999996 88888887764 466
Q ss_pred HcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC-----HHHHHHHHHHHHcCCCEEEecCCccccc-hh
Q 020079 250 ELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS-----MDAMEEIAKARKAGPNFLNTTIPLCDSC-SN 323 (331)
Q Consensus 250 ~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~-----~~~~~~i~~~~~~Gi~v~~~~~p~~~~~-~~ 323 (331)
+.|+++++....+..... ++.+.+.++.|+. ++||+. ..++..++++.++|++++.+|.-...+. ..
T Consensus 242 ~~g~l~~~~~~~H~~~~~-----~~e~~~l~~~g~~--v~~cP~sN~~L~sG~~p~~~~~~~gv~v~~gTD~~~~~~~~d 314 (421)
T COG0402 242 LLGLLGSHTLLAHCVHLS-----EEELELLAESGAS--VVHCPRSNLKLGSGIAPVRRLLERGVNVALGTDGAASNNVLD 314 (421)
T ss_pred HcCCCCCCeEEEEeccCC-----HHHHHHHhhCCCe--EEECcchhccccCCCCCHHHHHHcCCCEEEecCCccccChHH
Confidence 888888655444433222 2234555566765 666653 3456779999999999987666533222 44
Q ss_pred hhhhhc
Q 020079 324 IIRMVE 329 (331)
Q Consensus 324 ~~~~~~ 329 (331)
+.+.|+
T Consensus 315 ~l~~~~ 320 (421)
T COG0402 315 MLREMR 320 (421)
T ss_pred HHHHHH
Confidence 444443
No 53
>PRK05985 cytosine deaminase; Provisional
Probab=99.89 E-value=3.7e-21 Score=180.06 Aligned_cols=254 Identities=19% Similarity=0.173 Sum_probs=156.4
Q ss_pred ccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCC---------
Q 020079 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSET--------- 123 (331)
Q Consensus 53 ~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~--------- 123 (331)
.+++|+|++|+++. ..+|+|+||+|++|++....+++.++||++|++|+|||||+|+|+.....+...
T Consensus 2 ~~~~i~~~~i~~~~---~~~v~i~~g~i~~i~~~~~~~~~~~~id~~g~~v~Pg~iD~h~h~~~~~~~~~~~~~~~~~~~ 78 (391)
T PRK05985 2 TDLLFRNVRPAGGA---AVDILIRDGRIAAIGPALAAPPGAEVEDGGGALALPGLVDGHIHLDKTFWGDPWYPNEPGPSL 78 (391)
T ss_pred CCEEEECcEECCCC---eeEEEEECCEEEEecCCCCCCCCCcEEECCCCEEecceEeeEEccCccccCCccccCCCCCCH
Confidence 46899999999875 568999999999999865433456799999999999999999999754211110
Q ss_pred --------------hhhH----HHHHHHHHhCCceEEecCcCCCCC----cHHHHHHHHHHHhccce---eecccccccc
Q 020079 124 --------------IDDF----FSGQAAALAGGTTMHIDFVIPING----SLTAGFEAYEKKAKNSC---MDYGFHMAIT 178 (331)
Q Consensus 124 --------------~~~~----~~~~~~~l~~GvTtv~d~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 178 (331)
.++. ....+.++++|+|+++|+....+. .....++.......+.. +.+.......
T Consensus 79 ~~~i~~~~~~~~~~~~~~~~~a~~~~~~~l~~G~t~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~ 158 (391)
T PRK05985 79 RERIANERRRRAASGHPAAERALALARAAAAAGTTAMRSHVDVDPDAGLRHLEAVLAARETLRGLIDIQIVAFPQSGVLS 158 (391)
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHhcCcceEEeeEccCCCcccchHHHHHHHHHHhhCcccEEEEeccCccccC
Confidence 0011 223456789999999988654322 22222222222111222 2222111111
Q ss_pred CCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCch----hhHHHHHHHHHcCC
Q 020079 179 KWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGD----AVFEGQKRMIELGI 253 (331)
Q Consensus 179 ~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~----~~~~~~~~~~~~G~ 253 (331)
.....+.+++.. +.|.+.+ ..+.++....++++.+.++++.|+++|+++++|+ +..+ ......+.+.+.|.
T Consensus 159 --~~~~~~ll~~~l-~~g~~~~-gg~~p~~~~~~~~~~l~~~~~~A~~~g~~i~~Hv~e~~d~~~~~~~~~~e~~~~~g~ 234 (391)
T PRK05985 159 --RPGTAELLDAAL-RAGADVV-GGLDPAGIDGDPEGQLDIVFGLAERHGVGIDIHLHEPGELGAFQLERIAARTRALGM 234 (391)
T ss_pred --CcCHHHHHHHHH-HcCCCEE-eCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEeeCCCCCccHHHHHHHHHHHHHhCC
Confidence 111234455555 4565433 2234455566788999999999999999999996 4433 23333445556666
Q ss_pred CCcc--cccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecC
Q 020079 254 TGPE--GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTI 315 (331)
Q Consensus 254 ~~~~--~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~ 315 (331)
.+.. .|+..... .+.....+.++++++.|+.+..+. .....+..++++.+.|++|..++.
T Consensus 235 ~~~~~i~H~~~l~~-~~~~~~~~~i~~lae~g~~v~~~~-~~~~~~~~~~~l~~~Gv~v~lGtD 296 (391)
T PRK05985 235 QGRVAVSHAFCLGD-LPEREVDRLAERLAEAGVAIMTNA-PGSVPVPPVAALRAAGVTVFGGND 296 (391)
T ss_pred CCCEehhhhhhhhc-CCHHHHHHHHHHHHHcCCeEEEeC-CCCCCCCCHHHHHHCCCeEEEecC
Confidence 4321 22221111 112234567788888887654332 335567889999999999998764
No 54
>PRK07572 cytosine deaminase; Validated
Probab=99.88 E-value=6.3e-21 Score=180.21 Aligned_cols=252 Identities=15% Similarity=0.149 Sum_probs=156.1
Q ss_pred ccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCC-CC----------
Q 020079 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS---------- 121 (331)
Q Consensus 53 ~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~~---------- 121 (331)
++++|+|++++++. ...+|+|+||+|++|++..+. ...++||++|++|+|||||+|+|+.+.+. +.
T Consensus 2 ~~~~i~~~~i~~~~--~~~~i~i~~g~I~~v~~~~~~-~~~~~id~~g~~~~PG~id~h~h~~~~~~~~~~~~~~~g~l~ 78 (426)
T PRK07572 2 FDLIVRNANLPDGR--TGIDIGIAGGRIAAVEPGLQA-EAAEEIDAAGRLVSPPFVDPHFHMDATLSYGLPRVNASGTLL 78 (426)
T ss_pred CcEEEECeEECCCC--eeEEEEEECCEEEEecCCCCC-CcCceEeCCCCEEcccceehhhCcchhhccCCCCCCCCCCHH
Confidence 35789999998864 356899999999999986432 24579999999999999999999976421 11
Q ss_pred ------------CChhhHH----HHHHHHHhCCceEEecCcCCCCCc--HHHHHHHHHH-Hhccce---eeccccccccC
Q 020079 122 ------------ETIDDFF----SGQAAALAGGTTMHIDFVIPINGS--LTAGFEAYEK-KAKNSC---MDYGFHMAITK 179 (331)
Q Consensus 122 ------------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~--~~~~~~~~~~-~~~~~~---~~~~~~~~~~~ 179 (331)
.++++++ ...+.++++|||+++|+....... ....+...+. .+.+.. ..+......
T Consensus 79 e~l~~~~~~~~~~t~edl~~~a~~~~~e~l~~G~Ttvrd~~d~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~g~~-- 156 (426)
T PRK07572 79 EGIALWGELKPLLTQEALVERALRYCDWAVARGLLAIRSHVDVCDPRLLAVEALLEVRERVAPYLDLQLVAFPQDGVL-- 156 (426)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEeeccccCCCcccHHHHHHHHHHHhhccceEEEEeccChhhc--
Confidence 2334443 334567899999999975432221 1111212222 112211 111111111
Q ss_pred CChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCC--HHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH----HHHHHcC
Q 020079 180 WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMIN--DELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ----KRMIELG 252 (331)
Q Consensus 180 ~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~--~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~----~~~~~~G 252 (331)
...+..+.++++. +.|++.+.. .++....++ .+.++.++++|+++|+++++|+ ++..+..... +++.+.|
T Consensus 157 ~~~~~~~~~~~~l-~~g~d~iGg--~p~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~G 233 (426)
T PRK07572 157 RSPGAVDNLERAL-DMGVDVVGG--IPHFERTMADGAESVRLLCEIAAERGLRVDMHCDESDDPLSRHIETLAAETQRLG 233 (426)
T ss_pred cCccHHHHHHHHH-HcCCCEEeC--CCCCccccchHHHHHHHHHHHHHHcCCCeEEEECCCCChhHHHHHHHHHHHHHhC
Confidence 1122345666666 567766632 133333333 4899999999999999999998 6665544432 4456779
Q ss_pred CCCcccccccCChHHH--HHHHHHHHHHHHhcCCCEEEEeCCCH--------------HHHHHHHHHHHcCCCEEEecC
Q 020079 253 ITGPEGHALSRPPLLE--GEATTRAIRLAEFVNTPLYVVHVMSM--------------DAMEEIAKARKAGPNFLNTTI 315 (331)
Q Consensus 253 ~~~~~~~~~~~~~~~e--~~~i~~~~~l~~~~g~~~~i~H~~~~--------------~~~~~i~~~~~~Gi~v~~~~~ 315 (331)
+.+ .....|.....+ ....++.++++++.|+. ++||+.. .++..++++.++|++|..++.
T Consensus 234 ~~~-~v~~~H~~~l~~~~~~~~~~~~~~la~~g~~--vv~~P~~n~~l~~~~~~~~~~~g~~~v~~l~~~GV~v~lGtD 309 (426)
T PRK07572 234 LQG-RVAGSHLTSMHSMDNYYVSKLIPLMAEAGVN--AIANPLINITLQGRHDTYPKRRGMTRVPELMAAGINVAFGHD 309 (426)
T ss_pred CCC-CEEEEccchhhcCCHHHHHHHHHHHHHcCCe--EEECchhhhhhcCCCCCCCCCCCCcCHHHHHHCCCcEEEecC
Confidence 877 322222211111 22345567888888876 5665532 244568999999999998875
No 55
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=99.88 E-value=2.5e-21 Score=180.24 Aligned_cols=254 Identities=17% Similarity=0.173 Sum_probs=149.9
Q ss_pred CccEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHH
Q 020079 52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (331)
Q Consensus 52 ~~~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~ 129 (331)
+.+++|+|++|+++.. ..+++|+|+||+|++|++... ++..++||++|++|+|||||+|+|+..+ +. +....
T Consensus 2 ~~~~li~~~~i~~~~~~~~~~~~i~i~~g~I~~i~~~~~-~~~~~viD~~g~~v~PGliD~H~H~~~~--g~---~~~~~ 75 (379)
T PRK12394 2 KNDILITNGHIIDPARNINEINNLRIINDIIVDADKYPV-ASETRIIHADGCIVTPGLIDYHAHVFYD--GT---EGGVR 75 (379)
T ss_pred CccEEEECcEEECCCCCcccccEEEEECCEEEEEcCCCC-CCCCeEEECCCCEEECCEEEeeecCCCC--Cc---ccccC
Confidence 3568999999998653 456789999999999987532 2345899999999999999999999654 21 11122
Q ss_pred HHHHHHhCCceEEecCcCCCCCcHHHHHHH---HHHHhccceeeccccccccC-----CChh--hHHHHHHHHHH--hCC
Q 020079 130 GQAAALAGGTTMHIDFVIPINGSLTAGFEA---YEKKAKNSCMDYGFHMAITK-----WDEV--VSDEMEVMVKE--KGI 197 (331)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~--~g~ 197 (331)
....++++||||++|++.....+.....+. ..+.+.+..+++.+...... .... ..++++++.++ .++
T Consensus 76 ~~~~~l~~G~Ttv~d~g~~~~~~~~~~~~~~~a~~~~gira~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (379)
T PRK12394 76 PDMYMPPNGVTTVVDAGSAGTANFDAFYRTVICASKVRIKAFLTVSPPGQTWSGYQENYDPDNIDENKIHALFRQYRNVL 155 (379)
T ss_pred HHHHHHhCCccEEEECCCCCcccHHHHHHHHhhhhcceeeeEEeeecccccccCcccccChhHCCHHHHHHHHHHCcCcE
Confidence 335588999999999975433222111121 22222344455444332210 0101 13566666643 355
Q ss_pred CeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCch-hhHHHHHHHHHcCCCCcccccccCC---hHHHHHHHH
Q 020079 198 NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD-AVFEGQKRMIELGITGPEGHALSRP---PLLEGEATT 273 (331)
Q Consensus 198 ~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~-~~~~~~~~~~~~G~~~~~~~~~~~~---~~~e~~~i~ 273 (331)
.++|+++.+......+++.+++.++.|+++|+++++|+++.. +..+.. .+...|.. ..|+.+.. ...+...+.
T Consensus 156 ~g~ki~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~~~~~~~-~~l~~g~~--~~H~~~~~~~~~~~~~~~~~ 232 (379)
T PRK12394 156 QGLKLRVQTEDIAEYGLKPLTETLRIANDLRCPVAVHSTHPVLPMKELV-SLLRRGDI--IAHAFHGKGSTILTEEGAVL 232 (379)
T ss_pred EEEEEEEecccccccchHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHH-HhcCCCCE--EEecCCCCCCCcCCCCCCCh
Confidence 667766543322246789999999999999999999985533 322111 12222221 12222100 011112233
Q ss_pred HHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCC-CEEEec
Q 020079 274 RAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGP-NFLNTT 314 (331)
Q Consensus 274 ~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi-~v~~~~ 314 (331)
+.+..+.+.|..+.+.|-.+...++.+.++.++|+ ++..+|
T Consensus 233 ~~~~~~~~~G~~~~~~~g~s~~~~~~~~~~l~~G~~~~~lgT 274 (379)
T PRK12394 233 AEVRQARERGVIFDAANGRSHFDMNVARRAIANGFLPDIISS 274 (379)
T ss_pred HHHHHHHhCCeEEEecCCccccchHHHHHHHHCCCCceEEEC
Confidence 44556667776443444333344577788899995 776554
No 56
>PRK07213 chlorohydrolase; Provisional
Probab=99.88 E-value=8.6e-21 Score=176.37 Aligned_cols=241 Identities=19% Similarity=0.228 Sum_probs=148.0
Q ss_pred EEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCC------------
Q 020079 55 ILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG------------ 120 (331)
Q Consensus 55 ~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~------------ 120 (331)
++|+|++|+++.. ..+++|+|+||+|.+|++.. ++.++||++|++| |||||+|+|+.+....
T Consensus 2 ~li~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~---~~~~~id~~g~~v-PGlvd~H~H~~~~~~rg~~~~~~l~~~~ 77 (375)
T PRK07213 2 LVYLNGNFLYGEDFEPKKGNLVIEDGIIKGFTNEV---HEGNVIDAKGLVI-PPLINAHTHIGDSSIKDIGIGKSLDELV 77 (375)
T ss_pred EEEEeeEEEeCCCCceeeeEEEEECCEEEEeccCC---CCCeEEeCCCCEe-cceeeeccccCchhhhcCCCCCCHHHHc
Confidence 6899999999764 46788999999999999752 3458999999999 9999999999874210
Q ss_pred ------------CCChhhHH----HHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccc-cccccCCChh
Q 020079 121 ------------SETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGF-HMAITKWDEV 183 (331)
Q Consensus 121 ------------~~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 183 (331)
..++++.+ ..+..++++||||++|+..... ..++...+......+...+ ........+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~~~~~----~~~~~~~~a~~~~~~r~~~~~~~~~~~~~~ 153 (375)
T PRK07213 78 KPPNGLKHKFLNSCSDKELVEGMKEGLYDMYNNGIKAFCDFREGGI----KGINLLKKASSDLPIKPIILGRPTEADENE 153 (375)
T ss_pred cCCCcchHHHHhcCCHHHHHHHHHHHHHHHHHcCCeEEEEhhhcCh----hHHHHHHHHHHcCCCceEEecCCCcccchh
Confidence 11223333 2344568899999999743221 1122222221111111111 0000111122
Q ss_pred hHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHH--------HHHHHHcCCC
Q 020079 184 VSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEG--------QKRMIELGIT 254 (331)
Q Consensus 184 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~--------~~~~~~~G~~ 254 (331)
..+.+++..+. ..+ +++++...++.+.++++++.|+++|+++++|+ |...+.... .+++.+.|+.
T Consensus 154 ~~~~~~~~~~~--~~g----~~~~~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~G~~~v~~~~~~G~~ 227 (375)
T PRK07213 154 LKKEIREILKN--SDG----IGLSGANEYSDEELKFICKECKREKKIFSIHAAEHKGSVEYSLEKYGMTEIERLINLGFK 227 (375)
T ss_pred hHHHHHHHHHh--ccc----ccccccccCCHHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHHHHcCCChHHHHHhcCCC
Confidence 23334333321 222 23444556789999999999999999999997 666554332 2456777876
Q ss_pred CcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC---HHHHHHHHHHHHcCCCEEEecCC
Q 020079 255 GPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS---MDAMEEIAKARKAGPNFLNTTIP 316 (331)
Q Consensus 255 ~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~---~~~~~~i~~~~~~Gi~v~~~~~p 316 (331)
+.. ..+..... ++.++++++.|+.+.+++.++ ...+..+++++++|++|+.+|.-
T Consensus 228 -~~~-i~H~~~~~-----~~~i~~la~~g~~v~~~P~sn~~l~~g~~~v~~l~~~Gv~v~lGTD~ 285 (375)
T PRK07213 228 -PDF-IVHATHPS-----NDDLELLKENNIPVVVCPRANASFNVGLPPLNEMLEKGILLGIGTDN 285 (375)
T ss_pred -CCE-EEECCCCC-----HHHHHHHHHcCCcEEECCcchhhhccCCccHHHHHHCCCEEEEeeCC
Confidence 322 22222111 234677788887654444333 23567799999999999988763
No 57
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=99.88 E-value=2.5e-21 Score=179.30 Aligned_cols=212 Identities=18% Similarity=0.163 Sum_probs=148.2
Q ss_pred EEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCC----CCCC--ChhhHHH
Q 020079 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF----MGSE--TIDDFFS 129 (331)
Q Consensus 56 ~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~----~~~~--~~~~~~~ 129 (331)
+|+|++|+++++...++|.|+||+|++|++... ...++||++|++|+|||||+|+|..... .+.. ..+.+..
T Consensus 1 ~i~~~~vv~~~~~~~~~i~i~dg~I~~i~~~~~--~~~~~iD~~G~~v~PGlID~H~h~~e~~~~prp~~~~~~~~~~~~ 78 (376)
T TIGR02318 1 VLSNARLVLEDEVVEGSVVIEDGAIADIGEGPV--ALAEAIDGEGDLLLPGLIDLHTDNLERHMSPRPGVDWPIDAAIVE 78 (376)
T ss_pred CEeCeEEECCCceEeeeEEEECCEEEEecCCCC--CCCceEeCCCCEEeccEEEcccCccccCcCCCCCCCcchHHHHHH
Confidence 489999998877666799999999999998432 2356899999999999999999987610 1322 2377888
Q ss_pred HHHHHHhCCceEEecCcCCC---CC-cHHH----HHHHHHHHhcc--ceeeccccccccCCChhhHHHHHHHHHHhCCCe
Q 020079 130 GQAAALAGGTTMHIDFVIPI---NG-SLTA----GFEAYEKKAKN--SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINS 199 (331)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~---~~-~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 199 (331)
..++++++||||++|+.... +. ...+ .++.......+ ..+++.++.+......+..+++..+. +.|...
T Consensus 79 ~~~~~aa~GiTT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~h~~~e~~~~~~~~~l~~~~-~~g~~~ 157 (376)
T TIGR02318 79 HDKQLAAAGITTVFDALALGDTESGGRRPDNLRRMIDAISEARDRGLLRADHRLHLRCELPNEEVLPELEELI-DDPRVD 157 (376)
T ss_pred HHHHHhhCCcceEEeeEEecccCCcCccHHHHHHHHHHHHHhhhcCchhhhceeEEEEEecCccHHHHHHHHh-cCCCcC
Confidence 89999999999999996322 11 2222 23222333333 77899999888765666788888887 789999
Q ss_pred EEEEEecCCC--CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHH
Q 020079 200 FKFFMAYKGS--FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIR 277 (331)
Q Consensus 200 ik~~~~~~~~--~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~ 277 (331)
+|.|++..+. ...+.+.+.+.+.. +.| .+|+|..+..... ..+.+.. ..+.+.+.++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g---~~~~e~~~~~~~~---~~~~~~~-------------~~e~i~~~v~ 216 (376)
T TIGR02318 158 LISLMDHTPGQRQFRDLEKYREYYRG--KRG---LSDDEFDEIVEER---IARRAEY-------------GLANRSEIAA 216 (376)
T ss_pred EEEEeCCCCCcccccCHHHHHHHHHh--hcC---CCHHHHHHHHHHH---HHHHhhc-------------cHHHHHHHHH
Confidence 9999875432 24556666555543 556 6688776554322 1222210 1467888899
Q ss_pred HHHhcCCCEEEEeCC
Q 020079 278 LAEFVNTPLYVVHVM 292 (331)
Q Consensus 278 l~~~~g~~~~i~H~~ 292 (331)
+++..|+++ .+|..
T Consensus 217 ~A~~~G~~v-~sH~~ 230 (376)
T TIGR02318 217 LARARGIPL-ASHDD 230 (376)
T ss_pred HHHHCCCeE-EEecC
Confidence 999999987 88873
No 58
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=99.87 E-value=1e-20 Score=179.35 Aligned_cols=208 Identities=19% Similarity=0.199 Sum_probs=146.4
Q ss_pred CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCC----------CCCceEEeCCCCeeecccccccccccCCCCCC
Q 020079 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV----------GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS 121 (331)
Q Consensus 52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~----------~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~ 121 (331)
..+++|+|++|+++.....++|.|+||||++|++.... .++.++||++|++|+|||||+|+|+..+ +.
T Consensus 66 ~mDlVI~Na~Vvd~~gi~~adI~I~dGrI~~IG~~~~p~~~~~v~~~~~~~~eVIDa~G~iV~PG~ID~HvH~~~P--~~ 143 (568)
T PRK13207 66 AVDTVITNALILDHWGIVKADIGIKDGRIVAIGKAGNPDIQDGVDIIIGPGTEVIAGEGLIVTAGGIDTHIHFICP--QQ 143 (568)
T ss_pred cCCEEEECeEEECCCCeEEEEEEEECCEEEEEeCCCCccccccccccCCCCCeEEECCCCEEEeCeEECccCCccc--cH
Confidence 35799999999998667789999999999999974211 1356899999999999999999998765 21
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCC----Cc----HHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPIN----GS----LTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVK 193 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (331)
.+.++++||||+++++.... .. ....+....+.....++++.+.... ..+..++++++.
T Consensus 144 ---------~~aALagGVTTVi~mg~gP~~gt~~~t~tpG~~~l~~~l~~a~~~pin~g~~g~g---~~~~~~~L~e~i- 210 (568)
T PRK13207 144 ---------IEEALASGVTTMIGGGTGPATGTNATTCTPGPWHIHRMLQAADAFPMNIGFLGKG---NASLPEALEEQI- 210 (568)
T ss_pred ---------HHHHHcCCCCEEEcCCcCCccCCcccccccchHHHHHHHHHhhcCCceEEEEcCC---CcccHHHHHHHH-
Confidence 46789999999999843221 11 1122333333333345555554321 223466777777
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHH
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~ 273 (331)
+.|+.+||++.++. .+++.+.++++.|+++|+++.+|+....+.... +
T Consensus 211 ~aGA~gfKi~~d~g----~t~~~l~~aL~~A~~~gv~V~iHa~tlne~G~~----------------------------e 258 (568)
T PRK13207 211 EAGAIGLKLHEDWG----ATPAAIDNCLSVADEYDVQVAIHTDTLNESGFV----------------------------E 258 (568)
T ss_pred HcCCCEEeecCCCC----CCHHHHHHHHHHHHHhCCEEEEeCCCcccchHH----------------------------H
Confidence 78999999886542 478999999999999999999999765433111 1
Q ss_pred HHHHHHHhcCCCEEEEeCCC---HHHHHHHHHHHHcCC
Q 020079 274 RAIRLAEFVNTPLYVVHVMS---MDAMEEIAKARKAGP 308 (331)
Q Consensus 274 ~~~~l~~~~g~~~~i~H~~~---~~~~~~i~~~~~~Gi 308 (331)
. .+....|..+|++|... ...-+.++.+.+.|+
T Consensus 259 -~-t~~a~~g~~iH~~H~egaggghapdii~~~~~~~v 294 (568)
T PRK13207 259 -D-TIAAFKGRTIHTFHTEGAGGGHAPDIIKVAGEPNV 294 (568)
T ss_pred -H-HHHhcCCCEEEEEeecCCCcCCchHHHHHhhcCCC
Confidence 1 34445678899999652 234467788887775
No 59
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=99.87 E-value=6.2e-21 Score=174.14 Aligned_cols=184 Identities=23% Similarity=0.258 Sum_probs=132.2
Q ss_pred CeeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cceeecccccccc
Q 020079 101 KFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAIT 178 (331)
Q Consensus 101 ~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 178 (331)
.+|+||+||.|+|+..+ +..+.|++.++.++|+++||||+.||.+..+. ...+.++...+... .+.+++.++.+..
T Consensus 2 ~~vlPG~ID~HvH~r~p--g~~~~ed~~sgs~AAa~GGvTtv~dmPnt~P~~~~~~~~~~~~~~a~~~s~vd~~~~~~~~ 79 (344)
T cd01316 2 TIRLPGLIDVHVHLREP--GATHKEDFASGTKAALAGGFTMVRAMPNTNPSIVDVASLKLVQSLAQAKARCDYAFSIGAT 79 (344)
T ss_pred eEEeCCeEEeeeccCCC--CcCCcChHHHHHHHHHhCCCeEEEECCCCCCCCCCHHHHHHHHHHhccCcEEeEEEEeeec
Confidence 47999999999999998 77889999999999999999999999765433 45566666555554 3688888886665
Q ss_pred CCChhhHHHHHHHHHHhCCCeEEEEEecCCCC-cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcc
Q 020079 179 KWDEVVSDEMEVMVKEKGINSFKFFMAYKGSF-MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPE 257 (331)
Q Consensus 179 ~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~-~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~ 257 (331)
..+.+ ++.++. . ...++|.|+.+.... ..++.........+...+.++..|+|+.
T Consensus 80 ~~~~~---~~~~l~-~-~~~g~k~f~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~e~~------------------- 135 (344)
T cd01316 80 STNAA---TVGELA-S-EAVGLKFYLNETFSTLILDKITAWASHFNAWPSTKPIVTHAKSQ------------------- 135 (344)
T ss_pred CCCHH---HHHHHH-h-ccCeEEEEECCCCCCCccchHHHHHHHHHhcccCCCeEEehhhH-------------------
Confidence 44332 333333 2 256788886432111 0122111222333344467777776542
Q ss_pred cccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079 258 GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN 323 (331)
Q Consensus 258 ~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~ 323 (331)
.+.+.+.+++..|.++|++|+|+.++++.++++|++|++|+++|||||+.+..
T Consensus 136 -------------~~~~~l~la~~~g~~lhi~HiSt~~~~~~i~~ak~~g~~vt~ev~phhL~l~~ 188 (344)
T cd01316 136 -------------TLAAVLLLASLHNRSIHICHVSSKEEINLIRLAKARGLKVTCEVSPHHLFLSQ 188 (344)
T ss_pred -------------HHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHHHHHCCCcEEEEechHHeeccH
Confidence 23446778888999999999999999999999999999999999999998764
No 60
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=99.87 E-value=8.5e-21 Score=178.77 Aligned_cols=170 Identities=18% Similarity=0.167 Sum_probs=126.2
Q ss_pred CccEEEECcEEEeCC-CceeeeEEEeCCEEEEeeCCCCC------------CCCceEEeCCCCeeecccccccccccCCC
Q 020079 52 SSKILIKGGTVVNAH-HQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEF 118 (331)
Q Consensus 52 ~~~~~i~n~~i~~~~-~~~~~~v~i~~g~I~~ig~~~~~------------~~~~~~id~~g~~v~PG~ID~H~H~~~~~ 118 (331)
..+++|+|++|+|+. +...++|.|+||+|++|++.... .++.++||++|++|+|||||+|+|+..+
T Consensus 67 ~~DlVItNa~IIDp~~Gi~kaDIgIkDGrIaaIG~~~npd~~~gv~p~~~~g~~teVIDaeG~IVtPG~ID~HVH~~~P- 145 (569)
T PRK13308 67 ALDFVLCNVTVIDPVLGIVKGDIGIRDGRIVGIGKAGNPDIMDGVDPRLVVGPGTDVRPAEGLIATPGAIDVHVHFDSA- 145 (569)
T ss_pred cCCEEEECeEEEcCCCCeEEeEEEEECCEEEEecCCCCccccccccccccCCCCCeEEECCCCEEEeCEEEeeeCCCCc-
Confidence 357999999999864 46788999999999999975321 1356899999999999999999999765
Q ss_pred CCCCChhhHHHHHHHHHhCCceEEecCcCCC--C--CcHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHH
Q 020079 119 MGSETIDDFFSGQAAALAGGTTMHIDFVIPI--N--GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKE 194 (331)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (331)
+. .+.++++||||+++++..+ + ......++.+.+.....++++++..... ....+++.++. +
T Consensus 146 -g~---------~~aALagGVTTVi~gg~gPt~p~~t~g~~~i~~~l~aa~~~pvN~g~~gkG~---~s~~aeL~eli-~ 211 (569)
T PRK13308 146 -QL---------VDHALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQAAEAWPVNFGFLGRGN---SSKPAALIEQV-E 211 (569)
T ss_pred -cH---------HHHHHcCCCcEEecCCcCCCCCCCCCCHHHHHHHHHHHhcCCccEEEEcCCc---ccCHHHHHHHH-H
Confidence 21 3778999999999864222 1 1334445554444444567776654321 12356777777 7
Q ss_pred hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchh
Q 020079 195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA 240 (331)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~ 240 (331)
.|+.++|.+.+| ..+++.+.++++.|+++|+++.+|++...+
T Consensus 212 aGA~GfKi~ed~----g~t~~~i~~aL~~A~~~dv~VaiHadtlne 253 (569)
T PRK13308 212 AGACGLKIHEDW----GAMPAAIDTCLEVADEYDFQVQLHTDTLNE 253 (569)
T ss_pred CCCCEEeecCCC----CCCHHHHHHHHHHHHhcCCEEEEeCCCcCc
Confidence 899999987554 247889999999999999999999976554
No 61
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=99.87 E-value=1.5e-20 Score=177.83 Aligned_cols=207 Identities=17% Similarity=0.182 Sum_probs=145.8
Q ss_pred CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCC------------CCCceEEeCCCCeeecccccccccccCCCC
Q 020079 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (331)
Q Consensus 52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~------------~~~~~~id~~g~~v~PG~ID~H~H~~~~~~ 119 (331)
..+++|+|++|++..+...++|.|+||+|++|++.... .+..++||++|++|+|||||+|+|+..+
T Consensus 70 ~~DlVI~Na~IiD~~gi~~adI~IkDGrIvaIG~~~~p~~~~gv~~~~~ig~~tevIDaeG~iV~PG~ID~HVH~~~P-- 147 (573)
T PRK13206 70 APDTVITGAVILDHWGIVKADVGIRDGRIVAIGKAGNPDIMDGVHPDLVIGPSTEIIAGNGRILTAGAIDCHVHFICP-- 147 (573)
T ss_pred CCCEEEECeEEECCCCeEEEEEEEECCEEEEEeCCCCccccccccccccCCCCCEEEECCCCEEEeCEEeeeeccCCc--
Confidence 35799999999997777788999999999999974211 1346899999999999999999998765
Q ss_pred CCCChhhHHHHHHHHHhCCceEEecCcCCCC----C----cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHH
Q 020079 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPIN----G----SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191 (331)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (331)
+ . .+.++++||||+++++.... . .....+..+.+.....++++.++... +....+++.++
T Consensus 148 g-----~----~~aALagGVTTvi~~G~gP~~~t~~~t~t~g~~~l~~~~~aa~~~pvn~g~~g~g---~~~~~~~L~el 215 (573)
T PRK13206 148 Q-----I----VDEALAAGITTLIGGGTGPAEGSKATTVTPGAWHLARMLEALDGWPVNVALLGKG---NTVSAEALWEQ 215 (573)
T ss_pred h-----H----HHHHHcCCeEEEEcCCCCccccCcccccccchhHHHHHHHHhhcCceeEEEecCc---CcCCHHHHHHH
Confidence 2 1 37789999999999743221 1 11112223333444466777766532 22224567777
Q ss_pred HHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHH
Q 020079 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (331)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~ 271 (331)
. +.|+.+||.+.+| ..+++.+.++++.|+++|+++.+|+++..+...
T Consensus 216 ~-~aGA~GfKi~~d~----g~t~~~i~~aL~~A~~~gv~V~iHadtlne~g~---------------------------- 262 (573)
T PRK13206 216 L-RGGAGGFKLHEDW----GSTPAAIDACLRVADAAGVQVALHSDTLNEAGF---------------------------- 262 (573)
T ss_pred H-HCCCcEEeecCcc----CCCHHHHHHHHHHHHHhCCEEEEECCCccccch----------------------------
Confidence 7 7899999987544 368999999999999999999999987654311
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCH---HHHHHHHHHHHcC
Q 020079 272 TTRAIRLAEFVNTPLYVVHVMSM---DAMEEIAKARKAG 307 (331)
Q Consensus 272 i~~~~~l~~~~g~~~~i~H~~~~---~~~~~i~~~~~~G 307 (331)
.+. .++...|..+|++|.... ..-++++.+...+
T Consensus 263 -~E~-t~aa~~gr~iH~~H~egaggghapd~~~~~~~~n 299 (573)
T PRK13206 263 -VED-TLAAIAGRSIHAYHTEGAGGGHAPDIITVASHPN 299 (573)
T ss_pred -hhH-HHHHhcCCeEEEEeccCCCcCcccHHHHhcCCCC
Confidence 111 455567889999998642 2334555554433
No 62
>PRK09230 cytosine deaminase; Provisional
Probab=99.87 E-value=6e-20 Score=173.09 Aligned_cols=254 Identities=20% Similarity=0.182 Sum_probs=151.3
Q ss_pred ccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCC-CCceEEeCCCCeeecccccccccccCCCCCC----------
Q 020079 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFMGS---------- 121 (331)
Q Consensus 53 ~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~-~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~---------- 121 (331)
..++|+|++++++.. ..+|+|+||+|++|++....+ ++.++||++|++|+|||||+|+|+.+.+...
T Consensus 4 ~~~li~~~~~~~~~~--~~~i~i~~g~I~~i~~~~~~~~~~~~~id~~g~~v~PGlid~H~H~~~~~~~~~~~~~~~~~l 81 (426)
T PRK09230 4 ALMTIKNARLPGKEG--LWQITIEDGKISAIEPQSEASLEAGEVLDAEGGLAIPPFIEPHIHLDTTQTAGEPNWNQSGTL 81 (426)
T ss_pred ceEEEECcEEcCCCe--eEEEEEECCEEEEecCCCCCCCCCCceEeCCCCEeccceeEEEEccccceecCCCccCCCCCH
Confidence 468999999987542 468999999999999864322 3568999999999999999999998752211
Q ss_pred -------------CChhhHH----HHHHHHHhCCceEEecCcCCCCCc--HHHH-HHHHHHHhccceeecc--ccccccC
Q 020079 122 -------------ETIDDFF----SGQAAALAGGTTMHIDFVIPINGS--LTAG-FEAYEKKAKNSCMDYG--FHMAITK 179 (331)
Q Consensus 122 -------------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~--~~~~~~~ 179 (331)
.++++++ ...+.++++|||+++++..+.... ..+. ++...+......+.+. ...+...
T Consensus 82 ~~~i~~~~~~~~~~t~ed~~~~a~~~~~e~l~~GvTtvr~~~d~~~~~~~~~~a~~~~~~~~~~~~~~~i~a~~~~~~~~ 161 (426)
T PRK09230 82 FEGIERWAERKALLTHEDVKQRAWQTLKWQIANGIQHVRTHVDVSDPTLTALKAMLEVKEEVAPWVDLQIVAFPQEGILS 161 (426)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEEeccccCCcchhHHHHHHHHHHHhhCcceEEEEeccCccccC
Confidence 1223332 234557889999999887653221 1122 2222222211111111 1111111
Q ss_pred CChhhHHHHHHHHHHhCCCeEEEEEecCCCCcC--CHHHHHHHHHHHHHcCCcEEEEc-CCchhhH----HHHHHHHHcC
Q 020079 180 WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI--NDELLIEGFKRCKSLGALAMVHA-ENGDAVF----EGQKRMIELG 252 (331)
Q Consensus 180 ~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~--~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~----~~~~~~~~~G 252 (331)
. +...+.+++.. +.+.+.+. ..++..... +++.++.+++.|+++|+++++|+ |...+.. ...+.+.+.|
T Consensus 162 ~-~~~~~~l~~a~-~~~~~~vg--~~p~~~~~~~~~~e~l~~~~~~A~~~g~~~~~H~~E~~~~~~~~~~~~~~~~~~~g 237 (426)
T PRK09230 162 Y-PNGEALLEEAL-RLGADVVG--AIPHFEFTREYGVESLHKAFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAHREG 237 (426)
T ss_pred C-ccHHHHHHHHH-HcCCCEEe--CCCCccccchhHHHHHHHHHHHHHHhCCCcEEEECCCCCcchHHHHHHHHHHHHhC
Confidence 1 11223333333 33444332 233333333 57899999999999999999997 5444322 2235567777
Q ss_pred CCCcccccccCChHH--HHHHHHHHHHHHHhcCCCEEEEeCCCH--------------HHHHHHHHHHHcCCCEEEecC
Q 020079 253 ITGPEGHALSRPPLL--EGEATTRAIRLAEFVNTPLYVVHVMSM--------------DAMEEIAKARKAGPNFLNTTI 315 (331)
Q Consensus 253 ~~~~~~~~~~~~~~~--e~~~i~~~~~l~~~~g~~~~i~H~~~~--------------~~~~~i~~~~~~Gi~v~~~~~ 315 (331)
+ +++....+..... +.....++++++++.|+. ++||+.. .++..++++.++|++|+.+|.
T Consensus 238 l-~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv~--vv~cP~sn~~l~~~~~~~p~~~g~~pi~~l~~aGv~V~lGTD 313 (426)
T PRK09230 238 M-GARVTASHTTAMHSYNGAYTSRLFRLLKMSGIN--FVANPLVNIHLQGRFDTYPKRRGITRVKEMLEAGINVCFGHD 313 (426)
T ss_pred C-CCCEEEEecCchhcCCHHHHHHHHHHHHHcCCe--EEECcchhhhhcCCCCCCCCCCCCcCHHHHHHCCCeEEEecC
Confidence 4 4443333222221 011234567788887876 5555432 334568999999999998887
No 63
>TIGR02022 hutF formiminoglutamate deiminase. In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.
Probab=99.87 E-value=5.6e-21 Score=181.76 Aligned_cols=249 Identities=14% Similarity=0.051 Sum_probs=155.9
Q ss_pred EEEECcEEEeCCC-ceeeeEEEe-CCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCC------------
Q 020079 55 ILIKGGTVVNAHH-QQIADVYVE-DGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG------------ 120 (331)
Q Consensus 55 ~~i~n~~i~~~~~-~~~~~v~i~-~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~------------ 120 (331)
+.++|+++ +++ .++++|+|+ ||+|++||+....++. .+..|++|||||||+|+|+.+.+..
T Consensus 4 ~~~~~~~~--~~~~~~~~~i~I~~~g~I~~vg~~~~~~~~---~~~~g~lvlPGfVn~H~H~~~~~~rg~~~~~~~~~~~ 78 (455)
T TIGR02022 4 YWAERALL--PDGWAEGVRIAVAADGRILAIETGVPAAPG---AERLSGPLLPGLANLHSHAFQRAMAGLAEVAGSGGDS 78 (455)
T ss_pred hhHHhccC--CCccccCceEEEecCCEEEEecCCCCcccc---cccCCCEEccCCcccCcchhhHhhcCCcccccCCCCC
Confidence 56677776 333 357899999 9999999986432222 3346899999999999999764211
Q ss_pred -------------CCChhhHHH----HHHHHHhCCceEEecCcCCCC-------C----cHHHHHHHHHHHhccceeecc
Q 020079 121 -------------SETIDDFFS----GQAAALAGGTTMHIDFVIPIN-------G----SLTAGFEAYEKKAKNSCMDYG 172 (331)
Q Consensus 121 -------------~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~-------~----~~~~~~~~~~~~~~~~~~~~~ 172 (331)
..++++.+. +..+++++||||+.|+..... . .....++...+.+.+..+...
T Consensus 79 l~~w~~~~~~~~~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~e~G~R~~~~~~ 158 (455)
T TIGR02022 79 FWTWRELMYRFVDRLTPEQLQAIARQLYVEMLEAGFTRVGEFHYLHHAPDGTPYADPAEMAERIAAAAADAGIGLTLLPV 158 (455)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCEEEeeeeecccCCCccccchhhhHHHHHHHHHHhCCeEEeeee
Confidence 112333332 234568899999999752211 0 123445556666555333211
Q ss_pred cc--cc---ccC---------CChhhHHHHHHHHHH-hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-C
Q 020079 173 FH--MA---ITK---------WDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-E 236 (331)
Q Consensus 173 ~~--~~---~~~---------~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e 236 (331)
+. .. ... ..++..+..+.+.+. .+...+...+.++.++.++++.++++++ ++++|+++++|+ |
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~s~e~l~~~~~-a~~~g~~v~~H~~e 237 (455)
T TIGR02022 159 FYAHSGFGGAAPNPGQRRFIHDVERFARLVEVLRRELAAQPAAVLGLAPHSLRAVTPEQLAAVLQ-ASDRQAPVHIHVAE 237 (455)
T ss_pred eeecCCCCCCCCcccchhhccCHHHHHHHHHHHHHHhccCCceEEEEecCCCCcCCHHHHHHHHH-HHhCCCceEEEECC
Confidence 11 00 000 011122222333211 1223456667788888899999999999 889999999997 6
Q ss_pred CchhhHHHH--------HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC-----HHHHHHHHHH
Q 020079 237 NGDAVFEGQ--------KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS-----MDAMEEIAKA 303 (331)
Q Consensus 237 ~~~~~~~~~--------~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~-----~~~~~~i~~~ 303 (331)
+..+..... +++.+.|+++++....+..... ++.++++++.|+. ++||+. ..++..++++
T Consensus 238 ~~~e~~~~~~~~G~~~v~~l~~~g~l~~~~~~~H~~~l~-----~~d~~~la~~g~~--v~~~P~sn~~lg~g~~pi~~l 310 (455)
T TIGR02022 238 QQKEVDDCLAWSGRRPVEWLLDHGPVDARWCLVHATHLT-----DEETALLARSGAV--AGLCPTTEANLGDGIFPAVDF 310 (455)
T ss_pred ChHHHHHHHHHhCCCHHHHHHHcCCCCCCEEEEEeecCC-----HHHHHHHHHcCCe--EEEChhhhccccCCCCCHHHH
Confidence 766655443 4478889888765444433222 2356778888876 555553 2456789999
Q ss_pred HHcCCCEEEecCC
Q 020079 304 RKAGPNFLNTTIP 316 (331)
Q Consensus 304 ~~~Gi~v~~~~~p 316 (331)
.++|++|+.+|.-
T Consensus 311 ~~~Gv~v~lGTD~ 323 (455)
T TIGR02022 311 VAAGGRFGIGSDS 323 (455)
T ss_pred HHCCCeEEEECCC
Confidence 9999999998873
No 64
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.86 E-value=7.9e-21 Score=176.55 Aligned_cols=226 Identities=14% Similarity=0.003 Sum_probs=146.1
Q ss_pred CEEEEeeCCCCC---CCCceEEeCCCCeeecccccccccccCCCCC-C-------------------CChhhHH----HH
Q 020079 78 GIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-S-------------------ETIDDFF----SG 130 (331)
Q Consensus 78 g~I~~ig~~~~~---~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~-~-------------------~~~~~~~----~~ 130 (331)
|+|++||+.... .++.+++|+.|++|+|||||+|+|+.+.... . .++++.+ .+
T Consensus 1 ~~I~aVG~~~~~~~~~~~~~v~d~~g~~v~PGlVnaH~H~~~~~~rg~~~~~~~~~wl~~~~~~~~~~~~e~~~~~a~~~ 80 (381)
T cd01312 1 DKILEVGDYEKLEKRYPGAKHEFFPNGVLLPGLINAHTHLEFSANVAQFTYGRFRAWLLSVINSRDELLKQPWEEAIRQG 80 (381)
T ss_pred CeEEEECChHHHHhhcCCCeEEecCCcEEecCccccccccchhccccccCCCchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 689999985321 1356899999999999999999999765321 1 1122222 23
Q ss_pred HHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccC-CChhhHHHHHHHHH--HhCCCeEEEEEecC
Q 020079 131 QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITK-WDEVVSDEMEVMVK--EKGINSFKFFMAYK 207 (331)
Q Consensus 131 ~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~g~~~ik~~~~~~ 207 (331)
..+++++||||+.|+... .+..+...+.+.|..+.+.+...... ......+.++.... +.....++..++++
T Consensus 81 ~~E~l~~G~Tt~~d~~~~-----~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~ 155 (381)
T cd01312 81 IRQMLESGTTSIGAISSD-----GSLLPALASSGLRGVFFNEVIGSNPSAIDFKGETFLERFKRSKSFESQLFIPAISPH 155 (381)
T ss_pred HHHHHHhCCeEEEEecCC-----HHHHHHHHHcCCcEEEEEeeECCCCchhhhhHHHHHHHHHHhhccCccceEEEECCC
Confidence 345688999999998643 12455566666665444332211100 11111111112111 11234578888999
Q ss_pred CCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHH--------------------------HHHHHHcCCCCccccc
Q 020079 208 GSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEG--------------------------QKRMIELGITGPEGHA 260 (331)
Q Consensus 208 ~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~--------------------------~~~~~~~G~~~~~~~~ 260 (331)
.+..++++.++++.+.|+++|+++++|+ |+..+.... .+++.+.|++++....
T Consensus 156 a~~~~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~g~~pv~~l~~~g~L~~~~~~ 235 (381)
T cd01312 156 APYSVHPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLATAIDFLDMLGGLGTRVSF 235 (381)
T ss_pred CCcccCHHHHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccchhhHhhhhcccccccCCCCHHHHHHHcCCCCCCcEE
Confidence 9999999999999999999999999996 777765533 2457788888876544
Q ss_pred ccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecC
Q 020079 261 LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTI 315 (331)
Q Consensus 261 ~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~ 315 (331)
.+..... ++.++++++.|+. ++||+.. .....++++.++|++|+.++.
T Consensus 236 ~H~~~l~-----~~~~~~l~~~g~~--v~~~P~sn~~lg~g~~p~~~~~~~Gv~v~lGtD 288 (381)
T cd01312 236 VHCVYAN-----LEEAEILASRGAS--IALCPRSNRLLNGGKLDVSELKKAGIPVSLGTD 288 (381)
T ss_pred EECCcCC-----HHHHHHHHHcCCe--EEECcchhhhhcCCCcCHHHHHHCCCcEEEeCC
Confidence 4333222 2356777777765 6666642 244678999999999998875
No 65
>PRK14085 imidazolonepropionase; Provisional
Probab=99.86 E-value=6.3e-20 Score=171.10 Aligned_cols=245 Identities=18% Similarity=0.120 Sum_probs=149.0
Q ss_pred cEEEEC-cEEEeCCC---------ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCC---
Q 020079 54 KILIKG-GTVVNAHH---------QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG--- 120 (331)
Q Consensus 54 ~~~i~n-~~i~~~~~---------~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~--- 120 (331)
+++|+| +.|++.+. .++++|+|+||+|++|++....+.+.++||++|++|||||||+|+|+......
T Consensus 2 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~~~~~~~iD~~g~~v~PGlId~H~Hl~~~~~r~~~ 81 (382)
T PRK14085 2 STLITNIGELVTNDPELGEGPLGVLRDAAVVVEGGRVAWVGPAADAPAADERVDAGGRAVLPGFVDSHSHLVFAGDRSAE 81 (382)
T ss_pred cEEEEcccEEEcCCCcccCCCcccccCcEEEEECCEEEEEcCCccCCCCCeEEeCCCCEEecCeEecCcCccccCChhHH
Confidence 478999 59998652 35789999999999999864434456899999999999999999999653110
Q ss_pred -----------------------CCChhhHHH----HHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHh---cc-cee
Q 020079 121 -----------------------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKA---KN-SCM 169 (331)
Q Consensus 121 -----------------------~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~---~~-~~~ 169 (331)
..++++.+. ..+.++++||||++|+..... ...+.++..+..+ .. ...
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~t~e~~~~~a~~~~~~~l~~G~Ttv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 160 (382)
T PRK14085 82 FAARMAGEPYSAGGIRTTVAATRAASDEELRANVRRLVAEALRQGTTTVETKTGYGL-TVEDEARSARIAAEFTDEVTFL 160 (382)
T ss_pred HHhhhcCCCccCCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCceEEEcCCcCCC-CHHHHHHHHHHHHHhhhcceee
Confidence 112333332 345678999999999754322 2233333222211 11 111
Q ss_pred ecccccc-ccCCChhhHHHH----HHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHH
Q 020079 170 DYGFHMA-ITKWDEVVSDEM----EVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEG 244 (331)
Q Consensus 170 ~~~~~~~-~~~~~~~~~~~~----~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~ 244 (331)
....... .....+...+.+ ...+ +...+.+|++.+. ...+.++++++++.|+++|+++.+|+.+.... ..
T Consensus 161 g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~idi~~~~---~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~-~~ 235 (382)
T PRK14085 161 GAHVVPPEYAGDADEYVDLVCGPMLDAV-APHARWIDVFCER---GAFDEDQSRRVLTAGRAAGLGLRVHGNQLGPG-PG 235 (382)
T ss_pred ccccCCcccCCCHHHHHHHHHHHHHHHH-HHhCCeEEEEecC---CCCCHHHHHHHHHHHHHcCCCeEEEeCcccCC-hH
Confidence 1100000 011111222222 2333 3446677877653 24678999999999999999999998532111 12
Q ss_pred HHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecC
Q 020079 245 QKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTI 315 (331)
Q Consensus 245 ~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~ 315 (331)
.+.+.+.|..... |+... .++.++++++.|+. ++|++.. .....+++++++|++|..++.
T Consensus 236 v~~~~~~g~~~i~-H~~~l--------~~~~~~~la~~gv~--~~~~P~~~~~~~~~~~~~~~l~~aGv~v~lgsD 300 (382)
T PRK14085 236 VRLAVELGAASVD-HCTYL--------TDADVDALAGSGTV--ATLLPGAEFSTRQPYPDARRLLDAGVTVALASD 300 (382)
T ss_pred HHHHHHcCCCcHH-HhCCC--------CHHHHHHHHHcCCE--EEECcHHHHhcCCCCchHHHHHHCCCcEEEEeC
Confidence 2344556765433 22111 13455677777764 5555532 235679999999999988765
No 66
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=99.86 E-value=7e-20 Score=176.38 Aligned_cols=238 Identities=18% Similarity=0.236 Sum_probs=161.8
Q ss_pred cEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHH
Q 020079 54 KILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (331)
Q Consensus 54 ~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~ 131 (331)
+++|+|++|+++.. ...++|+|+||+|++|++.. +.++||++|++|+|||||+|+|+..+. ..++++ .
T Consensus 1 dlli~n~~ivd~~~~~~~~~dI~I~~g~I~~ig~~~----~~~viDa~G~~v~PG~ID~H~Hi~~~~---~~~~~~---~ 70 (552)
T TIGR01178 1 DIVIKNAKIIDVYNGEIIPGDIAIANGHIAGVGKYN----GVKVIDALGEYAVPGFIDAHIHIESSM---LTPSEF---A 70 (552)
T ss_pred CEEEEeeEEEeCCCCcEEeeeEEEECCEEEEecCCC----CCeEEECCCCEEEeCeEecccccCCCC---CChhHH---H
Confidence 47899999998653 45689999999999998742 358999999999999999999998762 245554 4
Q ss_pred HHHHhCCceEEecCcCCCC-CcHHHHHHHHHHHhccceeecccccccc------CCChh--hHHHHHHHHHHhCCCeEEE
Q 020079 132 AAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAKNSCMDYGFHMAIT------KWDEV--VSDEMEVMVKEKGINSFKF 202 (331)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~~~g~~~ik~ 202 (331)
+.++.+||||++++....+ ....+.++.+.+.....++++.+..+.. ..+.. ..++++++.++.|+.++|.
T Consensus 71 ~~al~~GvTtvv~~P~~~~~v~g~~~~~~~~~~a~~~~~d~~~~~~s~vp~~~~e~~g~~~~~~~i~~~~~~~~V~glke 150 (552)
T TIGR01178 71 KLVLPHGVTTVVSDPHEIANVNGEDGINFMLNNAKKTPLNFYFMLPSCVPALQFETSGAVLTAEDIDELMELDEVLGLAE 150 (552)
T ss_pred HHHHCCCEEEEEcCCCCCCCCCCHHHHHHHHHHhhcCCcEEEEECCCCCCCCcccCCCCccCHHHHHHHHcCCCccEEEE
Confidence 5679999999998754322 2456677776666556666664443321 11111 3577888885569999999
Q ss_pred EEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhc
Q 020079 203 FMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV 282 (331)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~ 282 (331)
++++.+....+.+.++.+ +.+++.|..+.+|++... ......+...|....+ .+...| .+......
T Consensus 151 ~m~~~~v~~~d~~~l~~i-~~a~~~g~~I~gHap~l~--~~eL~~~~~aGi~~dH-----e~~s~~------ea~e~~~~ 216 (552)
T TIGR01178 151 VMDYPGVINADIEMLNKI-NSARKRNKVIDGHCPGLS--GKLLNKYISAGISNDH-----ESTSIE------EAREKLRL 216 (552)
T ss_pred EecchhhcCCCHHHHHHH-HHHHhCCCEEEecCCCCC--HHHHHHHHHcCCCCCc-----CcCCHH------HHHHHHHC
Confidence 998765434455555555 889999999999997543 2334556677765432 222222 22334466
Q ss_pred CCCEEEEeCCCHHHHHHHHHHH--HcCCCEEEecC
Q 020079 283 NTPLYVVHVMSMDAMEEIAKAR--KAGPNFLNTTI 315 (331)
Q Consensus 283 g~~~~i~H~~~~~~~~~i~~~~--~~Gi~v~~~~~ 315 (331)
|..+.+.|.+....++.+..+. ..+.++..+|.
T Consensus 217 Gm~~~ir~gs~~~n~~~~~~~~~~~~~~~~~l~TD 251 (552)
T TIGR01178 217 GMKLMIREGSAAKNLEALHPLINEKNCRSLMLCTD 251 (552)
T ss_pred CCEEEEeCCccccCHHHHHHHHhhcCCceEEEEeC
Confidence 8888888887655545444432 34567777766
No 67
>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=99.86 E-value=4.9e-20 Score=173.58 Aligned_cols=193 Identities=18% Similarity=0.202 Sum_probs=141.7
Q ss_pred CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCC------------CCCceEEeCCCCeeecccccccccccCCCC
Q 020079 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (331)
Q Consensus 52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~------------~~~~~~id~~g~~v~PG~ID~H~H~~~~~~ 119 (331)
..+++|+|++|++......++|.|+||+|++|++.... .++.++||++|++|+|||||+|+|+..+
T Consensus 64 ~~DlVI~Na~IiD~~gi~~adI~IkdGrIvaIG~agnp~~~~~v~~~~~~g~~teVIDaeG~iV~PG~ID~HvH~~~P-- 141 (567)
T cd00375 64 VLDLVITNALIIDYTGIYKADIGIKDGRIVAIGKAGNPDIMDGVTPNMIVGPSTEVIAGEGKIVTAGGIDTHVHFICP-- 141 (567)
T ss_pred cCCEEEECeEEECCCCcEEEEEEEECCEEEEEecCCCccccccccccccCCCCCeEEECCCCEEeeceEECccCCCCc--
Confidence 35799999999997766789999999999999975321 1246899999999999999999998765
Q ss_pred CCCChhhHHHHHHHHHhCCceEEecCcCCC-------CC-cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHH
Q 020079 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPI-------NG-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191 (331)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (331)
+. .+.++++||||+++++..+ +. .....++...+.....++++.+.... ..+..+++.++
T Consensus 142 ~~---------~~aAlagGVTTvI~~G~gP~~gtnatp~t~g~~~l~~ml~aa~~~pin~g~~gkg---~~~~l~eL~e~ 209 (567)
T cd00375 142 QQ---------IEEALASGITTMIGGGTGPAAGTKATTCTPGPWNIKRMLQAADGLPVNIGFLGKG---NGSSPDALAEQ 209 (567)
T ss_pred cH---------HHHHHcCCCcEEEcCCcCcccccCCCCCCCCHHHHHHHHHHhhcCCceEEEEecC---ccccHHHHHHH
Confidence 21 4678999999999973222 11 23355555555555556777665422 23445677777
Q ss_pred HHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHH
Q 020079 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (331)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~ 271 (331)
. +.|+.++|.+.+| ..++..+.++++.|+++|.++.+|++...+...
T Consensus 210 ~-~aGA~GfK~~eD~----g~t~~~i~~aL~~A~~~dv~VaiHadtlne~g~---------------------------- 256 (567)
T cd00375 210 I-EAGACGLKLHEDW----GATPAAIDTCLSVADEYDVQVAIHTDTLNESGF---------------------------- 256 (567)
T ss_pred H-HcCCEEEEecCCC----CCCHHHHHHHHHHHHhhCCEEEEECCCCCcchH----------------------------
Confidence 7 7899999977554 248899999999999999999999986554321
Q ss_pred HHHHHHHHHhcCCCEEEEeCCC
Q 020079 272 TTRAIRLAEFVNTPLYVVHVMS 293 (331)
Q Consensus 272 i~~~~~l~~~~g~~~~i~H~~~ 293 (331)
++ . .++...|..+|++|...
T Consensus 257 ~E-~-t~aa~~gr~iH~~H~eg 276 (567)
T cd00375 257 VE-D-TIAAIKGRTIHTYHTEG 276 (567)
T ss_pred HH-H-HHHHhcCCeEEEEecCC
Confidence 11 1 45666789999999864
No 68
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.86 E-value=1.7e-20 Score=176.73 Aligned_cols=235 Identities=15% Similarity=0.037 Sum_probs=148.9
Q ss_pred eeeeE-EEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCC-------------------------C
Q 020079 69 QIADV-YVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS-------------------------E 122 (331)
Q Consensus 69 ~~~~v-~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~-------------------------~ 122 (331)
++++| +|+||+|++||+... .++||++|++|+|||||+|+|+.+..... .
T Consensus 9 ~~~~i~~v~~g~I~~Vg~~~~----~~~iD~~g~lv~PGfVn~H~Hl~~~~~rg~~~~~~~~~~~l~~w~~~~~~~~~~~ 84 (418)
T cd01313 9 RNVRIEVDADGRIAAVNPDTA----TEAVALLGGALLPGMPNLHSHAFQRAMAGLTEYRGSAADSFWTWRELMYRFAARL 84 (418)
T ss_pred cCeEEEEeCCCeEEEecCCCC----CcccccCCCeeccCccccCccHHHHHhcccccccCCCCCChhhHHHHHHHHHHhC
Confidence 46899 999999999998542 25799999999999999999998752111 1
Q ss_pred ChhhHHH----HHHHHHhCCceEEecCcCCCCC-----------cHHHHHHHHHHHhccceeecccc--cc---cc-C--
Q 020079 123 TIDDFFS----GQAAALAGGTTMHIDFVIPING-----------SLTAGFEAYEKKAKNSCMDYGFH--MA---IT-K-- 179 (331)
Q Consensus 123 ~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~--~~---~~-~-- 179 (331)
++++++. +..+++++||||++|+...... ......++..+.+.+..+...+. .+ .. .
T Consensus 85 t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~~ 164 (418)
T cd01313 85 TPEQIEAIARQLYIEMLLAGITAVGEFHYVHHDPDGTPYADPAELAQRVIAAASDAGIGITLLPVLYARAGFGGPAPNPG 164 (418)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEEEeeeeccCCCCCccCChhhhHHHHHHHHHHhCCeEEeeeeEEeccCCCCCCCchh
Confidence 2223322 2344688999999997532110 11334455555555533321111 00 00 0
Q ss_pred ------CChhhHHHHHHHHHH-hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHH------
Q 020079 180 ------WDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQ------ 245 (331)
Q Consensus 180 ------~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~------ 245 (331)
..++..+.+.++.+. .....+...+.++....++++.++++++.|++ |+++++|+ |+..+.....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~s~e~l~~~~~~a~~-g~~i~~H~~e~~~e~~~~~~~~g~~ 243 (418)
T cd01313 165 QRRFINGYEDFLGLLEKALRAVKEHAAARIGVAPHSLRAVPAEQLAALAALASE-KAPVHIHLAEQPKEVDDCLAAHGRR 243 (418)
T ss_pred hhhhcccHHHHHHHHHHHhhhhccCCceEEEEccCCCCCCCHHHHHHHHHHHhc-CCceEEEeCCCHHHHHHHHHHcCCC
Confidence 001222233332211 12234666777888888999999999999999 99999997 6665544332
Q ss_pred --HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC-----HHHHHHHHHHHHcCCCEEEecC
Q 020079 246 --KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS-----MDAMEEIAKARKAGPNFLNTTI 315 (331)
Q Consensus 246 --~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~-----~~~~~~i~~~~~~Gi~v~~~~~ 315 (331)
+++.+.|.++++....+..... ++.++++++.|+. ++||+. ...+..++++.++|++|+.++.
T Consensus 244 ~i~~l~~~g~l~~~~~~~H~~~l~-----~~~~~~la~~g~~--v~~~P~sn~~lg~g~~p~~~l~~~Gv~v~lGtD 313 (418)
T cd01313 244 PVELLLDHGHLDARWCLVHATHLT-----DNETLLLGRSGAV--VGLCPTTEANLGDGIFPAAALLAAGGRIGIGSD 313 (418)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCC-----HHHHHHHHHcCCE--EEECCCchhhccCCCCCHHHHHHCCCcEEEecC
Confidence 4567788888764444433222 2346777877875 566654 2456689999999999998886
No 69
>PRK09356 imidazolonepropionase; Validated
Probab=99.85 E-value=1.4e-19 Score=170.41 Aligned_cols=250 Identities=21% Similarity=0.155 Sum_probs=144.5
Q ss_pred CCccEEEECcEEEeCCC--------ceeeeEEEeCCEEEEeeCCCCCC--CCceEEeCCCCeeecccccccccccCCCCC
Q 020079 51 SSSKILIKGGTVVNAHH--------QQIADVYVEDGIVVAVQPNINVG--DDVKVLDATGKFVMPGGIDPHTHLAMEFMG 120 (331)
Q Consensus 51 ~~~~~~i~n~~i~~~~~--------~~~~~v~i~~g~I~~ig~~~~~~--~~~~~id~~g~~v~PG~ID~H~H~~~~~~~ 120 (331)
||.+++|+|++|++++. .++++|+|+||||++||+..+.+ .+.++||++|++|||||||+|+|+.++...
T Consensus 1 ~~~~~li~~~~v~~~~~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~~ 80 (406)
T PRK09356 1 MMADLLWTNAQLATMDGGGMGELGIIEDGAIAIEDGKIVWVGPEADLPAAYAAEVIDAGGKLVTPGLIDCHTHLVFGGNR 80 (406)
T ss_pred CCceEEEECCEEEecCCCCccccccccCcEEEEECCEEEEEeCccccccccCceEEECCCCEEeeceEecCCCcccCCCc
Confidence 45779999999998653 34789999999999999865332 235899999999999999999999764210
Q ss_pred C-------------------------------CChhhHH----HHHHHHHhCCceEEecCcCCCCC--cHHHHHHHHHHH
Q 020079 121 S-------------------------------ETIDDFF----SGQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKK 163 (331)
Q Consensus 121 ~-------------------------------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~ 163 (331)
. .++++.+ .....++++||||+.++...... ...+.++..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~ 160 (406)
T PRK09356 81 ANEFELRLQGVSYEEIAAQGGGILSTVRATRAASEEELFAQALPRLDALLAEGVTTVEIKSGYGLDLETELKMLRVARRL 160 (406)
T ss_pred HHHHHHHHCCCcHHHHHHhcCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCHHHHHHHHHHHHHH
Confidence 0 0112221 22345688999999986432211 111223333333
Q ss_pred hccceeecc--cc---c-c--ccCCChhhHHH----HHHHHHH-hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCc
Q 020079 164 AKNSCMDYG--FH---M-A--ITKWDEVVSDE----MEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGAL 230 (331)
Q Consensus 164 ~~~~~~~~~--~~---~-~--~~~~~~~~~~~----~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~ 230 (331)
+.+..+... +. . + .....++..+. +.+.... .+...++.+.. ...++++.++++++.|+++|++
T Consensus 161 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~l~~~~~~A~~~g~~ 237 (406)
T PRK09356 161 GEEHPVDVVTTFLGAHAVPPEYKGRPDAYIDLVCEEMLPAVAEEGLADAVDVFCE---TGAFSVEQSERVLEAAKALGLP 237 (406)
T ss_pred hhhCCCceEeeeeecccCCccccCCHHHHHHHHHHHHhHHHHhcCCcceEEEEec---CCCCCHHHHHHHHHHHHHCCCC
Confidence 322211110 00 0 0 00111111222 2221111 23555554322 3356899999999999999999
Q ss_pred EEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC------HHHHHHHHHHH
Q 020079 231 AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS------MDAMEEIAKAR 304 (331)
Q Consensus 231 v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~------~~~~~~i~~~~ 304 (331)
+++|+....... ..+...+.|..... |+... -++.+++.++.|+. ++||+. ......++++.
T Consensus 238 v~~H~~~~~~~~-~~~~~~~~~~~~~~-H~~~~--------~~~~~~~la~~g~~--~~~~P~~~~~l~~~~~~~~~~l~ 305 (406)
T PRK09356 238 VKIHAEQLSNLG-GAELAAEYGALSAD-HLEYL--------DEAGIAAMAEAGTV--AVLLPGAFYFLRETQYPPARLLR 305 (406)
T ss_pred EEEEEecccCCC-HHHHHHHcCCcEeh-HhhcC--------CHHHHHHHHHhCCE--EEECccchhhcCcccCchHHHHH
Confidence 999974221111 11223344543322 22111 12345666777775 445543 23467789999
Q ss_pred HcCCCEEEecC
Q 020079 305 KAGPNFLNTTI 315 (331)
Q Consensus 305 ~~Gi~v~~~~~ 315 (331)
++|++++.++.
T Consensus 306 ~~Gi~v~lgtD 316 (406)
T PRK09356 306 DAGVPVALATD 316 (406)
T ss_pred HCCCeEEEeCC
Confidence 99999998775
No 70
>PRK13985 ureB urease subunit beta; Provisional
Probab=99.85 E-value=1.1e-19 Score=170.70 Aligned_cols=206 Identities=17% Similarity=0.199 Sum_probs=142.7
Q ss_pred CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCC------------CCCceEEeCCCCeeecccccccccccCCCC
Q 020079 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (331)
Q Consensus 52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~------------~~~~~~id~~g~~v~PG~ID~H~H~~~~~~ 119 (331)
..+++|+|++|++..+...++|.|+||+|++|++.... .++.++||++|++|+|||||+|+|+..+
T Consensus 64 ~~DlVI~Na~IiD~~gi~kaDI~IkdGrIaaIG~~gn~~~~~~v~~~~~ig~~tevIDa~G~iV~PG~ID~HvH~~~P-- 141 (568)
T PRK13985 64 ELDLIITNALIIDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFISP-- 141 (568)
T ss_pred cCCEEEECeEEECCCCcEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEECCCCEEEeCEEEeeCCCCCc--
Confidence 45799999999997667788999999999999985321 1356899999999999999999998765
Q ss_pred CCCChhhHHHHHHHHHhCCceEEecCcCCC-----CC---cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHH
Q 020079 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPI-----NG---SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191 (331)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (331)
+ . .+.++++||||+++++... +. .....++...+.....++++.++... .....+++.++
T Consensus 142 ~-----~----~~~AlagGVTTvI~~G~gP~~~T~p~~~tpg~~~i~~ml~~a~~~pvn~gf~gkG---~~~~l~eL~el 209 (568)
T PRK13985 142 Q-----Q----IPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLGKG---NSSNDASLADQ 209 (568)
T ss_pred c-----H----HHHHhcCceEEEEccCcCCCCCCCCcCCCCcHHHHHHHHHHhhccCccEEEecCC---ccCCHHHHHHH
Confidence 2 1 2458999999999853221 11 11222344444444445666665422 12335677777
Q ss_pred HHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHH
Q 020079 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (331)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~ 271 (331)
. +.|+.++|.+..+ ..++..+.++++.|++++.++.+|+++..+....
T Consensus 210 ~-~aGA~GfK~~ed~----g~t~~~I~~aL~vA~~~dv~V~iHtdtlne~g~~--------------------------- 257 (568)
T PRK13985 210 I-EAGAIGFKIHEDW----GTTPSAINHALDVADKYDVQVAIHTDTLNEAGCV--------------------------- 257 (568)
T ss_pred H-HcCCEEEEECCcc----CCCHHHHHHHHHHHHHcCCEEEEeCCCCCCchhh---------------------------
Confidence 7 7899889865433 3678999999999999999999999776543211
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCH---HHHHHHHHHHHc
Q 020079 272 TTRAIRLAEFVNTPLYVVHVMSM---DAMEEIAKARKA 306 (331)
Q Consensus 272 i~~~~~l~~~~g~~~~i~H~~~~---~~~~~i~~~~~~ 306 (331)
+ . .++...|..+|++|.... ..-++++.+...
T Consensus 258 -E-~-t~aa~~gr~iH~~H~egaggghapdi~~~~~~~ 292 (568)
T PRK13985 258 -E-D-TMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEH 292 (568)
T ss_pred -H-H-HHHHhcCCeEEEEeccCCCccchhhHHHHcCCC
Confidence 1 1 345557889999998642 333445554433
No 71
>TIGR01792 urease_alph urease, alpha subunit. This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor.
Probab=99.85 E-value=1.1e-19 Score=172.77 Aligned_cols=175 Identities=18% Similarity=0.195 Sum_probs=123.6
Q ss_pred CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCC----------CCCceEEeCCCCeeecccccccccccCCCCCC
Q 020079 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV----------GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS 121 (331)
Q Consensus 52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~----------~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~ 121 (331)
.++++|+|++|++......++|.|+||||++|++.... .++.++||++|++|+|||||+|+|+..+
T Consensus 65 ~MDlVIkNg~VID~~gi~kaDI~IkDGrIaaIG~~~~p~~~~~v~~~~~~~tEVIDa~GkIV~PGlIDtHvH~~~P---- 140 (567)
T TIGR01792 65 VLDLVITNALILDWTGIYKADIGIKNGRIVGIGKAGNPDTMDGVDMIVGASTEAISGEGKIVTAGGIDTHVHYISP---- 140 (567)
T ss_pred cCcEEEECeEEECCCCeEEEEEEEECCEEEEEcCCCcccccccccccCCCCCeEEECCCCEEEECeEEeecCCCCc----
Confidence 35799999999997666789999999999999975321 1246899999999999999999998654
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCC-----CC---cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPI-----NG---SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVK 193 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (331)
+ ..+.++.+||||+++++... +. ...-......+......+++.+.... ..+..+++.++.
T Consensus 141 ---~----~~~aAl~gGVTTmI~~Gtgp~~~t~pTt~t~~~~~~~~~l~aa~~~~in~g~~g~g---~~~~~~~L~e~i- 209 (567)
T TIGR01792 141 ---Q----QVQAALDNGITTLIGGGTGPADGTNATTCTPGPWYLHRMLQAADGLPINFGFTGKG---SGSGPAALIEQI- 209 (567)
T ss_pred ---c----HHHHHHhCceEEEecCCCccccCCCCcccccchhhHHHHHHHhccCCccEEEEeCC---ccchHHHHHHHH-
Confidence 1 15778999999999965311 01 11111122223333345555544211 122345666666
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchh---hHHHH
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA---VFEGQ 245 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~---~~~~~ 245 (331)
+.|+.++|.+ ..+.++++.+.++++.|+++|+++++|+|+..+ ++...
T Consensus 210 ~aGa~gfK~h----~~y~~s~e~L~~al~~A~e~gv~V~iH~ET~~E~g~ve~t~ 260 (567)
T TIGR01792 210 EAGACGLKVH----EDWGATPAAIDNALSVADEYDVQVAVHTDTLNESGFVEDTI 260 (567)
T ss_pred HcCCcEEEeC----CCCCCCHHHHHHHHHHHHHcCCEEEEeCCCcccchHHHHHH
Confidence 5788777754 345689999999999999999999999988777 55443
No 72
>PRK09237 dihydroorotase; Provisional
Probab=99.85 E-value=1.5e-19 Score=168.62 Aligned_cols=252 Identities=21% Similarity=0.162 Sum_probs=145.2
Q ss_pred EEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHH
Q 020079 55 ILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132 (331)
Q Consensus 55 ~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~ 132 (331)
++|+|++|+++.. ....+|+|+||||++|++....+++.++||++|++|+|||||+|+|+..+ +... +. ...+
T Consensus 1 ~~i~~~~v~d~~~~~~~~~~v~i~~g~I~~v~~~~~~~~~~~~iD~~g~~v~PG~iD~H~H~~~~--~~~~-~~--~~~~ 75 (380)
T PRK09237 1 LLLRGGRVIDPANGIDGVIDIAIEDGKIAAVAGDIDGSQAKKVIDLSGLYVSPGWIDLHVHVYPG--STPY-GD--EPDE 75 (380)
T ss_pred CEEEeEEEECCCCCcccceEEEEECCEEEEecCCCCCCCCCeEEECCCCEEecCEEEeeecCCCC--CCcc-CC--CHHH
Confidence 3789999998764 45689999999999998864433356899999999999999999999864 2111 11 3456
Q ss_pred HHHhCCceEEecCcCCCCCcHHHHHHHHHHH-hc--cceeeccccccccC-C----ChhhHHHHHHHHHH--hCCCeEEE
Q 020079 133 AALAGGTTMHIDFVIPINGSLTAGFEAYEKK-AK--NSCMDYGFHMAITK-W----DEVVSDEMEVMVKE--KGINSFKF 202 (331)
Q Consensus 133 ~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~--~g~~~ik~ 202 (331)
.++.+||||++|+......+.....+...+. +. ..++++...+.... . .....++++++.++ .++.++|.
T Consensus 76 ~~~~~G~Ttv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~glk~ 155 (380)
T PRK09237 76 VGVRSGVTTVVDAGSAGADNFDDFRKLTIEASKTRVLAFLNISRIGLLAQDELADLEDIDADAVAEAVKRNPDFIVGIKA 155 (380)
T ss_pred HHHhCCcCEEEECCCCCCCCHHHHHHHHHhhhCcEEEEEEeeecccccccchhcCHhHCCHHHHHHHHHhCcCcEEEEEE
Confidence 7899999999998754443333333333322 22 23334433322211 1 11234566666643 46788998
Q ss_pred EEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCch-hhHHHHHHHHHcCCCCccccccc-CC--hHHHHHHHHHHHHH
Q 020079 203 FMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD-AVFEGQKRMIELGITGPEGHALS-RP--PLLEGEATTRAIRL 278 (331)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~-~~~~~~~~~~~~G~~~~~~~~~~-~~--~~~e~~~i~~~~~l 278 (331)
++.+........+.++.....+++.|+++.+|+++.. ...+... +.+.|. .-.|+.. .+ ...+.....+.+..
T Consensus 156 ~~~~~v~~~~~~~~~~~~~~~a~~~g~~v~~H~~~~~~~~~~l~~-~l~~g~--~~~H~~~~~~~~~~~~~~~~~~~a~~ 232 (380)
T PRK09237 156 RMSSSVVGDNGIEPLELAKAIAAEANLPLMVHIGNPPPSLEEILE-LLRPGD--ILTHCFNGKPNRILDEDGELRPSVLE 232 (380)
T ss_pred EEecccccccCCchHHHHHHHHHhcCCCEEEEcCCCCCCHHHHHh-hccCCC--EEEecCCCCCCCccCCCCcchHHHHH
Confidence 8875421111113444555556689999999986543 2333322 223331 1122221 11 11111112223344
Q ss_pred HHhcCCCEEEEeCCCHHHHHHHHHHHHcCC-CEEEec
Q 020079 279 AEFVNTPLYVVHVMSMDAMEEIAKARKAGP-NFLNTT 314 (331)
Q Consensus 279 ~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi-~v~~~~ 314 (331)
+.+.|..+.+.|.+....++.++++.++|+ +.+.++
T Consensus 233 ~l~~G~~~~ig~g~~~~~~~~~~~l~~~g~~~~~l~t 269 (380)
T PRK09237 233 ALERGVRLDVGHGTASFSFKVAEAAIAAGILPDTIST 269 (380)
T ss_pred HHHCCEEEEecCCCCcccHHHHHHHHHCCCCceEEEC
Confidence 445687777777653344455666777885 444444
No 73
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=99.84 E-value=4e-19 Score=164.60 Aligned_cols=250 Identities=17% Similarity=0.118 Sum_probs=155.4
Q ss_pred EEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCC----CCceEEeCCCCeeecccccccccccCCCC-CCCChhhHHH
Q 020079 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG----DDVKVLDATGKFVMPGGIDPHTHLAMEFM-GSETIDDFFS 129 (331)
Q Consensus 55 ~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~----~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~~~~~~~~~~ 129 (331)
++|+|++|++++.....+|+|+||||++|++..+.+ ....++|++|++|+|||||+|+|+..... +.......+.
T Consensus 2 ~li~n~~v~~~~~~~~~dvlI~~gkI~~Ig~~~~~~~~~~~~~~i~d~~G~~v~PGlID~HvH~~~gg~~~~~~~~~~e~ 81 (389)
T TIGR01975 2 TLLKGAEVYAPEYIGKKDILIANDKIIAIADEIPSTKDFVPNCVVVGLEGMIAVPGFIDQHVHIIGGGGEGGPTTRTPEL 81 (389)
T ss_pred EEEECcEEEcCCcCcceeEEEECCEEEEEcCCccccccCCCCeEEECCCCCEEccCEeehhhccccccccCCCccCCHHH
Confidence 689999999987667789999999999999875432 22335566999999999999999876311 1110112223
Q ss_pred HHHHHHhCCceEEecCcCCCCC-----cHHHHHHHHHHHhccceeeccc-cccccCCChhhHHHHHHHHHHhCCCeEE-E
Q 020079 130 GQAAALAGGTTMHIDFVIPING-----SLTAGFEAYEKKAKNSCMDYGF-HMAITKWDEVVSDEMEVMVKEKGINSFK-F 202 (331)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~ik-~ 202 (331)
....++++||||++|+...... ...+..+.+.+.+.+....... ..+....+....+++.. ...+-++| +
T Consensus 82 ~~~e~l~~GvTTv~d~~g~~~~~~~~~~~~a~~~al~~~Gir~~~~~g~~~~p~~t~t~~~~~d~~~---~d~iiG~~~i 158 (389)
T TIGR01975 82 TLSDITKGGVTTVVGLLGTDGITRHMESLLAKARALEEEGISCYMLTGAYHVPSRTITGSVESDLLL---IDKVIGVGEI 158 (389)
T ss_pred HHHHHHhCCcEEEecCcccCccccChhhHHHHHHHHHHhCCEEEEEcccccCCCcccccchhhheee---ehhhcccceE
Confidence 5777899999999998643221 2334555555555554333222 12222223333333321 12344564 6
Q ss_pred EEecCCCCcCCHHHHHHHHHHHHHcC----Cc--EEEEc-CCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHH
Q 020079 203 FMAYKGSFMINDELLIEGFKRCKSLG----AL--AMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA 275 (331)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~A~~~g----~~--v~~H~-e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~ 275 (331)
-++.+.....+.++|+++.+.|+..| ++ +++|. ..+...+...+.+++..+.....++-+.... ..-.++.
T Consensus 159 a~sd~r~~~~~~~~l~~~~~~~~~~g~~~~~~g~~~vH~g~~~~~l~~l~~~~~~~di~~~~f~pth~~r~--~~l~~~~ 236 (389)
T TIGR01975 159 AISDHRSAQPTVEHLTNMAAEARVGGLLGGKPGIVNFHVGDSKRALQPIYELVENTDVPITQFLPTHINRN--VPLFEAG 236 (389)
T ss_pred EEccCcCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCchhhHHHHHHHHHhcCCChhheecCccCCC--HHHHHHH
Confidence 77888778889999999999999999 99 99997 4555566666666665555443333221111 1233455
Q ss_pred HHHHHhcCCCEEEEeCCC--------HHHHHHHHHHHHcCCCE
Q 020079 276 IRLAEFVNTPLYVVHVMS--------MDAMEEIAKARKAGPNF 310 (331)
Q Consensus 276 ~~l~~~~g~~~~i~H~~~--------~~~~~~i~~~~~~Gi~v 310 (331)
++.+++.| .+.+.-..+ -...+.+++++++|+++
T Consensus 237 i~~~~~gg-~iDv~~~~~~~~l~~~~~~~~~~~~~~~~~Gv~~ 278 (389)
T TIGR01975 237 LEFAKKGG-TIDLTSSIDPQFRKEGEVAPAEGIKKALEAGVPL 278 (389)
T ss_pred HHHHHhCC-cEEEeCCCCccchhccccChHHHHHHHHHcCCCc
Confidence 56666544 343431111 12234689999999974
No 74
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=99.84 E-value=5.6e-20 Score=175.19 Aligned_cols=249 Identities=12% Similarity=0.030 Sum_probs=154.2
Q ss_pred cEEEECcEEEeCCCceeeeEEEeC-CEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCC-C-----------
Q 020079 54 KILIKGGTVVNAHHQQIADVYVED-GIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G----------- 120 (331)
Q Consensus 54 ~~~i~n~~i~~~~~~~~~~v~i~~-g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~----------- 120 (331)
.++++++.+.++ ..++++|+|+| |+|++||+... ++ .++.+|++|||||||+|+|+.+.+. |
T Consensus 4 ~~~~~~~~~~~~-~~~~~~v~i~~~grI~~vg~~~~-~~---~~~~~g~~vlPGlVn~H~H~~~~~~rg~~~~~~~~~~~ 78 (456)
T PRK09229 4 TLFAERALLPDG-WARNVRLTVDADGRIAAVEPGAA-PA---GAERLAGPVLPGMPNLHSHAFQRAMAGLTEVRGPPQDS 78 (456)
T ss_pred hHHHHHhhCCCc-cccCcEEEEecCCeEEEecCCCC-Cc---cccccCcEEccCcccccccHhhHhhcCcccccCCCCCC
Confidence 355666666333 24678999999 99999998543 22 2456899999999999999874421 0
Q ss_pred -------------CCChhhHH----HHHHHHHhCCceEEecCcCCCCC-----------cHHHHHHHHHHHhccceeecc
Q 020079 121 -------------SETIDDFF----SGQAAALAGGTTMHIDFVIPING-----------SLTAGFEAYEKKAKNSCMDYG 172 (331)
Q Consensus 121 -------------~~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 172 (331)
..++++.+ .+...++++||||+.|+...... .....++...+.+.|..+...
T Consensus 79 l~~w~~~~~~~~~~~~~e~~~~~a~~~~~e~L~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~e~GiR~~~~~~ 158 (456)
T PRK09229 79 FWSWRELMYRFALRLTPDQLEAIARQLYVEMLEAGYTSVGEFHYLHHDPDGTPYADPAEMALRIVAAARAAGIGLTLLPV 158 (456)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCcEEEeeeeeccCCCCCccCChHHHHHHHHHHHHHcCCEEEecee
Confidence 01222222 23345688999999987532110 113445555565555333211
Q ss_pred cc--c-----ccc-------CCChhhHHHHHHHHHH-hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-C
Q 020079 173 FH--M-----AIT-------KWDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-E 236 (331)
Q Consensus 173 ~~--~-----~~~-------~~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e 236 (331)
.. . +.. ...++..+..+++.+. .+...+++.+.+++...++++.++++++.| ++|+++++|+ |
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~s~e~l~~~~~~A-~~g~~i~~H~~e 237 (456)
T PRK09229 159 LYAHSGFGGQPPNPGQRRFINDPDGFLRLLEALRRALAALPGARLGLAPHSLRAVTPDQLAAVLALA-APDGPVHIHIAE 237 (456)
T ss_pred eeecCCCCCCCCchhhcccccCHHHHHHHHHHHHHhhcCCCceEEEEeCCCCCCCCHHHHHHHHHHh-cCCCceEEEeCC
Confidence 10 0 000 0111122233333322 223457777888888899999999999999 9999999997 6
Q ss_pred CchhhHHHH--------HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC-----HHHHHHHHHH
Q 020079 237 NGDAVFEGQ--------KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS-----MDAMEEIAKA 303 (331)
Q Consensus 237 ~~~~~~~~~--------~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~-----~~~~~~i~~~ 303 (331)
+..+..... +.+.+.|.++++....+..... ++.++++++.|+. ++||+. ..++..++++
T Consensus 238 ~~~e~~~~~~~~g~~~~~~l~~~g~l~~~~~l~H~~~l~-----~~d~~~la~~g~~--v~~~P~sn~~lg~g~~p~~~l 310 (456)
T PRK09229 238 QTKEVDDCLAWSGARPVEWLLDHAPVDARWCLVHATHLT-----DAETARLARSGAV--AGLCPTTEANLGDGIFPAVDY 310 (456)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHcCCCCCCeEEEeeccCC-----HHHHHHHHHcCCe--EEECchhhhhhcCCCCCHHHH
Confidence 666555443 3466778887764333332221 2346777787875 555553 2355678999
Q ss_pred HHcCCCEEEecC
Q 020079 304 RKAGPNFLNTTI 315 (331)
Q Consensus 304 ~~~Gi~v~~~~~ 315 (331)
.++|++|+.++.
T Consensus 311 ~~~Gv~v~lGtD 322 (456)
T PRK09229 311 LAAGGRFGIGSD 322 (456)
T ss_pred HHCCCeEEEecC
Confidence 999999998886
No 75
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.84 E-value=2.5e-19 Score=164.43 Aligned_cols=236 Identities=18% Similarity=0.092 Sum_probs=140.8
Q ss_pred eEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC
Q 020079 72 DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING 151 (331)
Q Consensus 72 ~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~ 151 (331)
+|+|+||+|++|++....+++.++||++|++|+|||||+|+|+..+ +....+ ...+.++++||||++|+......
T Consensus 1 ~i~i~~g~I~~i~~~~~~~~~~~~id~~g~~v~PG~iD~H~H~~~~--g~~~~~---~~~~~a~~~GvTtvvd~~~~~~~ 75 (338)
T cd01307 1 DVAIENGKIAAVGAALAAPAATQIVDAGGCYVSPGWIDLHVHVYQG--GTRYGD---RPDMIGVKSGVTTVVDAGSAGAD 75 (338)
T ss_pred CEEEECCEEEEccCCCCCCCCCeEEECCCCEEecCeEEeeecCCCC--CcccCC---CHhHHHHcCceeEEEeCCCCCCC
Confidence 5899999999999864433346899999999999999999999887 433333 25777899999999999865544
Q ss_pred cHHHHHHHHHHHh-c--cceeeccccccccC--CC---hhhHHHHHHHHHH--hCCCeEEEEEecCCCCcCCHHHHHHHH
Q 020079 152 SLTAGFEAYEKKA-K--NSCMDYGFHMAITK--WD---EVVSDEMEVMVKE--KGINSFKFFMAYKGSFMINDELLIEGF 221 (331)
Q Consensus 152 ~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~--~g~~~ik~~~~~~~~~~~~~~~l~~~~ 221 (331)
......+...+.. . ....++.+++.... .+ ....+.+.+...+ .|+.++|.++..+.........++..+
T Consensus 76 ~~~~~~~~~~~~~~~~v~a~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~e~~~gi~gik~~~~~~~~~~~~~~~l~~~~ 155 (338)
T cd01307 76 NIDGFRYTVIERSATRVYAFLNISRVGLVAQDELPDPDNIDEDAVVAAAREYPDVIVGLKARASKSVVGEWGIKPLELAK 155 (338)
T ss_pred CHHHHHHHHHHhhhceEEEEEeeeccccccccccCChhHCCHHHHHHHHHHCcCcEEEEEEEeecccccccCCcHHHHHH
Confidence 4333344443232 2 24555554433211 11 1123344444422 577889998876543333444588999
Q ss_pred HHHHHcCCcEEEEcCCc-hhhHHHHHHHHHcCCCCcccccccCC--hHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHH
Q 020079 222 KRCKSLGALAMVHAENG-DAVFEGQKRMIELGITGPEGHALSRP--PLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAME 298 (331)
Q Consensus 222 ~~A~~~g~~v~~H~e~~-~~~~~~~~~~~~~G~~~~~~~~~~~~--~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~ 298 (331)
+.|++.|+|+.+|+++. ....+... +.+.|. ...+.....+ ...+...+.+.+..+.+.|..+.+.|........
T Consensus 156 ~~a~~~~~pi~vH~~~~~~~~~~~~~-~l~~g~-~~~H~~~g~~~~~~~~~~~~~~~~~~~~~~G~~~d~~~G~~~~~~~ 233 (338)
T cd01307 156 KIAKEADLPLMVHIGSPPPILDEVVP-LLRRGD-VLTHCFNGKPNGIVDEEGEVLPLVRRARERGVIFDVGHGTASFSFR 233 (338)
T ss_pred HHHHHcCCCEEEEeCCCCCCHHHHHH-HhcCCC-EEEeccCCCCCCCCCCCCcHHHHHHHHHhCCEEEEeCCCCCchhHH
Confidence 99999999999998553 33333332 333442 1111111111 1111111223445555667776666543233345
Q ss_pred HHHHHHHcCC-CEEEec
Q 020079 299 EIAKARKAGP-NFLNTT 314 (331)
Q Consensus 299 ~i~~~~~~Gi-~v~~~~ 314 (331)
.++++++.|+ +.+..+
T Consensus 234 ~~~~l~~~G~~~~~lst 250 (338)
T cd01307 234 VARAAIAAGLLPDTISS 250 (338)
T ss_pred HHHHHHHCCCCCeeecC
Confidence 5677888886 444433
No 76
>PRK06846 putative deaminase; Validated
Probab=99.84 E-value=5.2e-19 Score=166.43 Aligned_cols=256 Identities=13% Similarity=0.018 Sum_probs=153.1
Q ss_pred EEEECcEEEeCC----------CceeeeEEEeCCEEEEeeCCCCC-CCCceEEeCCCCeeecccccccccccCCCCCCCC
Q 020079 55 ILIKGGTVVNAH----------HQQIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSET 123 (331)
Q Consensus 55 ~~i~n~~i~~~~----------~~~~~~v~i~~g~I~~ig~~~~~-~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~ 123 (331)
+.|+|+++.... ....++|.|+||+|++|++.... +.+.++||++|++|+|||||+|+|+.+++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~g~I~~i~~~~~~~~~~~~~id~~g~~v~Pg~iD~H~H~~~~~~~~~~ 85 (410)
T PRK06846 6 YWLTNVRLETGFDYENGVIVQTETALCTLEIQDGKIVAIRPNKQVPDATLPTYDANGLLMLPAFREMHIHLDKTYYGGPW 85 (410)
T ss_pred eEEEeeecCccccccCceecCCceeeEEEEEECCEEEEeecCCCCCCCCCceEeCCCCEEecCEEeeeecccchhhccch
Confidence 567776654322 23467999999999999986322 2246899999999999999999999875311110
Q ss_pred --------------------h---hhH----HHHHHHHHhCCceEEecCcCCCCC----cHHHHHHHHHHHhccceeecc
Q 020079 124 --------------------I---DDF----FSGQAAALAGGTTMHIDFVIPING----SLTAGFEAYEKKAKNSCMDYG 172 (331)
Q Consensus 124 --------------------~---~~~----~~~~~~~l~~GvTtv~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 172 (331)
+ +.. .......+++|+|+++++....+. ......+...+..........
T Consensus 86 ~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~~~Gtt~~r~~v~~~~~~~~~~~~a~~e~l~e~~~~v~~~~~ 165 (410)
T PRK06846 86 KACRPAKTIQDRIELEQKELPELLPTTQERAEKLIELLQSKGATHIRSHCNIDPVIGLKNLENLQAALERYKDGFTYEIV 165 (410)
T ss_pred hhcCCcccHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHhCCccEEEEEEeeCcccccchHHHHHHHHHHhhCcceEEEE
Confidence 0 001 122344567899999887653332 111111222221111111111
Q ss_pred ccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhh----HHHHHH
Q 020079 173 FHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAV----FEGQKR 247 (331)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~----~~~~~~ 247 (331)
.............+.+++.. +.|++.++. +.+......+++.++++++.|+++|+++++|+ +...+. +...++
T Consensus 166 a~~~~g~~~~~~~~lL~~al-~~Ga~~i~g-l~p~~~~~~~~~~l~~~~~lA~~~g~~v~~Hv~e~~~~~~~~~~~~~~~ 243 (410)
T PRK06846 166 AFPQHGLLRSNSEPLMREAM-KMGAHLVGG-VDPASVDGAIEKSLDTMFQIAVDFNKGVDIHLHDTGPLGVATIKYLVET 243 (410)
T ss_pred eccCcccCCccHHHHHHHHH-HcCCCEEeC-CCCccCCcCHHHHHHHHHHHHHHhCCCcEEEECCCCChhHHHHHHHHHH
Confidence 11100000022234566666 678776653 24444456778999999999999999999996 433222 223456
Q ss_pred HHHcCCCCcccccccCChH--HHHHHHHHHHHHHHhcCCCEEEEeC-CCHHHHHHHHHHHHcCCCEEEecC
Q 020079 248 MIELGITGPEGHALSRPPL--LEGEATTRAIRLAEFVNTPLYVVHV-MSMDAMEEIAKARKAGPNFLNTTI 315 (331)
Q Consensus 248 ~~~~G~~~~~~~~~~~~~~--~e~~~i~~~~~l~~~~g~~~~i~H~-~~~~~~~~i~~~~~~Gi~v~~~~~ 315 (331)
+.+.|+.+ .....+.... .....+++.++++++.|+.+ +|+ ....++..+++++++|++|+.++.
T Consensus 244 ~~~~gl~~-~v~~~H~~~l~~~~~~e~~~li~~la~~g~~v--~~~~~~~~g~~p~~~l~~~Gv~v~lGtD 311 (410)
T PRK06846 244 TEEAQWKG-KVTISHAFALGDLNEEEVEELAERLAAQGISI--TSTVPIGRLHMPIPLLHDKGVKVSLGTD 311 (410)
T ss_pred HHHhCCCC-CEEEEecchhhcCCHHHHHHHHHHHHHcCCeE--EEeCCCCCCCCCHHHHHhCCCeEEEecC
Confidence 77788776 4333332211 11234566677888888764 453 234567889999999999998775
No 77
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=99.84 E-value=9.3e-19 Score=163.80 Aligned_cols=255 Identities=16% Similarity=0.140 Sum_probs=148.3
Q ss_pred EEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCC---CCceEEeCCCCeeecccccccccccCCCCC-CCChhhHHHH
Q 020079 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG---DDVKVLDATGKFVMPGGIDPHTHLAMEFMG-SETIDDFFSG 130 (331)
Q Consensus 55 ~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~---~~~~~id~~g~~v~PG~ID~H~H~~~~~~~-~~~~~~~~~~ 130 (331)
++|+|++|++++...+++|+|+||+|++|++..+.+ +..++||++|++|+|||||+|+|+...... .....+....
T Consensus 3 ~~i~~~~v~~~~~~~~~~i~i~~g~I~~v~~~~~~~~~~~~~~~id~~g~~v~PG~id~H~H~~~~~~~~~~~~~t~~~~ 82 (388)
T PRK10657 3 TLLKNAHVYAPEDLGKKDILIAGGKIIAIADNINIPDIVPDIEVIDASGKILVPGFIDQHVHIIGGGGEGGFSTRTPEVQ 82 (388)
T ss_pred EEEEccEEECCCCCcceEEEEECCEEEEecCCccccccCCCCeEEECCCCEEcccceeeeeCcccCCCCcccccCCHHHH
Confidence 789999999887666789999999999998753221 246899999999999999999998742100 0111233456
Q ss_pred HHHHHhCCceEEecCcCCCCC-cHHHH----HHHHHHHhccceeecccc-ccccCCChhhHHHHHHHHHHhCCCeE-EEE
Q 020079 131 QAAALAGGTTMHIDFVIPING-SLTAG----FEAYEKKAKNSCMDYGFH-MAITKWDEVVSDEMEVMVKEKGINSF-KFF 203 (331)
Q Consensus 131 ~~~~l~~GvTtv~d~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~i-k~~ 203 (331)
.+.++++||||++|+...... ...+. .+...+.+-+......++ .+.....+...+++ ...+ ...++ +..
T Consensus 83 ~~~~~~~GvTTvvd~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~g~g~~~ 159 (388)
T PRK10657 83 LSDLTEAGITTVVGLLGTDGITRSMESLLAKARALEEEGISAYMYTGSYHVPVRTITGSIRKDI-VLID--KVIGVGEIA 159 (388)
T ss_pred HHHHHhCCceEEECCCCCCCCCCCHHHHHHHHHHHHhhCCEEEEEecCCCCCchhhhcchhhce-ehhh--hhhCcceee
Confidence 788899999999998733221 11222 222222233322111111 11100111111111 1111 11123 444
Q ss_pred EecCCCCcCCHHHHHHHHHHHHHcCC------cEEEEc-CCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHH
Q 020079 204 MAYKGSFMINDELLIEGFKRCKSLGA------LAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAI 276 (331)
Q Consensus 204 ~~~~~~~~~~~~~l~~~~~~A~~~g~------~v~~H~-e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~ 276 (331)
..++.....++++++++.+.++..+. ++++|+ ++....+...+++.+.|+.....+..+..... ...++..
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~a~~~~~~~g~~~~i~vH~~~~~~~l~~v~~~l~~~Gv~~~~~~~~H~~~~~--~~~~~~~ 237 (388)
T PRK10657 160 ISDHRSSQPTVEELARLAAEARVGGLLSGKAGIVHVHMGDGKKGLQPLFELLENTDIPISQFLPTHVNRNE--PLFEQAL 237 (388)
T ss_pred eccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCchHHHHHHHHHHHhcCCCcceeeCcccCCCH--HHHHHHH
Confidence 45565566789999998888876554 899996 45555554445667889876654333322111 1123344
Q ss_pred HHHHhcCCCEEEEe-CCC---H---HHHHHHHHHHHcCC---CEEEecC
Q 020079 277 RLAEFVNTPLYVVH-VMS---M---DAMEEIAKARKAGP---NFLNTTI 315 (331)
Q Consensus 277 ~l~~~~g~~~~i~H-~~~---~---~~~~~i~~~~~~Gi---~v~~~~~ 315 (331)
++++ .|.-+.+.| ++. . ..++.+.++.+.|+ ++..++.
T Consensus 238 ~~~~-~G~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~G~~~d~v~l~tD 285 (388)
T PRK10657 238 EFAK-KGGVIDLTTSDPDFLGEGEVAPAEALKRALEAGVPLSRVTLSSD 285 (388)
T ss_pred HHHH-cCCeEEEecCCCcccccCccCHHHHHHHHHHcCCChhheEEECC
Confidence 4444 355554553 221 1 44577888999998 6766554
No 78
>PRK13309 ureC urease subunit alpha; Reviewed
Probab=99.83 E-value=4.1e-19 Score=168.92 Aligned_cols=170 Identities=18% Similarity=0.188 Sum_probs=123.3
Q ss_pred CccEEEECcEEEeCC-CceeeeEEEeCCEEEEeeCCCCC------------CCCceEEeCCCCeeecccccccccccCCC
Q 020079 52 SSKILIKGGTVVNAH-HQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEF 118 (331)
Q Consensus 52 ~~~~~i~n~~i~~~~-~~~~~~v~i~~g~I~~ig~~~~~------------~~~~~~id~~g~~v~PG~ID~H~H~~~~~ 118 (331)
..+++|+|++|+|+. +...++|.|+||+|++|++.... .++.++||++|++|+|||||+|+|+..+
T Consensus 67 ~~DlVI~Ng~ViD~~~gi~kaDI~IkdGrI~aIG~~~~p~~~~~v~~~~~~g~~tevIDa~G~iVtPG~ID~HvH~~~P- 145 (572)
T PRK13309 67 VLDLVITNVTIVDARLGVIKADVGIRDGKIVGIGKSGNPSTMDGVTQGMVVGVSTDAISGEHLILTAAGIDTHIHLISP- 145 (572)
T ss_pred cCCEEEECeEEEcCCCCEEEEEEEEECCEEEEecCCCccccccccccccccCCCceEEECCCCEEEeCEEEeecccCCc-
Confidence 357999999999963 56788999999999999975321 1136899999999999999999998766
Q ss_pred CCCCChhhHHHHHHHHHhCCceEEecCcCCC----C----CcHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHH
Q 020079 119 MGSETIDDFFSGQAAALAGGTTMHIDFVIPI----N----GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEV 190 (331)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (331)
+. .+.++.+||||+++++... + ......++.+.+.....++++.+.... ......++.+
T Consensus 146 -~~---------~~aAl~gGVTTvi~~G~gp~~~~n~~~~t~g~~~i~~~l~~a~~~pvn~g~~gkg---~~~~~~~l~e 212 (572)
T PRK13309 146 -QQ---------AYHALSNGVTTFFGGGIGPTDGTNGTTVTPGPWNIRQMLRSIEGLPVNVGILGKG---NSYGRGPLLE 212 (572)
T ss_pred -ch---------HHHHHcCceEEEEecCCCCccCCCCCCCCCCHHHHHHHHHHhccCCcCEEEEcCC---CCCCHHHHHH
Confidence 21 3578999999999753211 1 122344555555554556676665422 1122356666
Q ss_pred HHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchh
Q 020079 191 MVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA 240 (331)
Q Consensus 191 ~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~ 240 (331)
+. +.|+.++|.+.++. .+++.+.++++.|+++|.++.+|++...+
T Consensus 213 l~-~aGa~gfk~~~d~g----~t~~~L~~aLe~A~~~gv~VaiH~d~lnE 257 (572)
T PRK13309 213 QA-IAGVAGYKVHEDWG----ATAAALRHALRVADEVDIQVAVHTDSLNE 257 (572)
T ss_pred HH-hcCcEEEEecCcCC----cCHHHHHHHHHHHHhcCCEEEEeCCcccc
Confidence 66 78999998765442 48899999999999999999999866544
No 79
>PLN02303 urease
Probab=99.82 E-value=1.7e-18 Score=168.54 Aligned_cols=186 Identities=16% Similarity=0.225 Sum_probs=132.6
Q ss_pred CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCC---C---------CCceEEeCCCCeeecccccccccccCCCC
Q 020079 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV---G---------DDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (331)
Q Consensus 52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~---~---------~~~~~id~~g~~v~PG~ID~H~H~~~~~~ 119 (331)
..+++|+|++|+|..+...++|+|+||+|++|++.... . ++.++||++|++|+|||||+|+|+..+
T Consensus 333 ~~DlVItNa~IID~~Gi~kaDI~IkDGrIvaIGkagnp~i~~gv~~~~~~g~~teVIDAeGlIVtPG~ID~HVHf~~P-- 410 (837)
T PLN02303 333 SLDTVITNAVIIDYTGIYKADIGIKDGLIVGIGKAGNPDVMDGVTSNMIVGVNTEVIAGEGMIVTAGGIDCHVHFICP-- 410 (837)
T ss_pred cCCEEEeCeEEECCCCcEEeEEEEECCEEEEecCCCCcccccccccccccCCCCeEEECCCCEEEeCEEEeecCCCCC--
Confidence 35799999999996667788999999999999974211 1 136899999999999999999999765
Q ss_pred CCCChhhHHHHHHHHHhCCceEEecCcCCC-----CC---cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHH
Q 020079 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPI-----NG---SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191 (331)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (331)
+. .+.++++||||+++++... +. .....++...+.....++++++.... .....+++.++
T Consensus 411 g~---------~~eaLasGVTTai~GGtgp~pnT~ptt~t~g~e~I~~~L~aa~~~pvn~Gf~gkG---~~s~l~eL~el 478 (837)
T PLN02303 411 QL---------ATEAIASGITTLVGGGTGPAHGTCATTCTPAPSHMKLMLQSTDDLPLNFGFTGKG---NTAKPEGLHEI 478 (837)
T ss_pred cH---------HHHHHHHhHHHHHhcCCCCCCcccCcCCCCCHHHHHHHHHhcccCCCcEEEEccC---cccCHHHHHHH
Confidence 21 2455666777666653211 11 13455666666555566777765422 12345667777
Q ss_pred HHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchh---hHHHH--------HHHHHcCCCCc
Q 020079 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA---VFEGQ--------KRMIELGITGP 256 (331)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~---~~~~~--------~~~~~~G~~~~ 256 (331)
. +.|+.++|.+. .+..+++.+.++++.|+++|+++++|+|+..+ ++... .++...|+.+-
T Consensus 479 i-eaGa~GfK~h~----d~gvTpelL~raLe~AkelGVpVaIHAEdLnE~G~vE~t~~a~G~RpIh~~h~~Ga~gg 549 (837)
T PLN02303 479 I-KAGAMGLKLHE----DWGTTPAAIDNCLDVAEEYDIQVTIHTDTLNESGCVEHSIAAFKGRTIHTYHSEGAGGG 549 (837)
T ss_pred H-HcCcEEEEECC----CCCCCHHHHHHHHHHHHHcCCEEEEecCcccccchHHHHHHHHCCChHHHHHhcCCCCC
Confidence 6 67998888653 33567899999999999999999999988655 44333 44777787663
No 80
>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]
Probab=99.82 E-value=1.1e-18 Score=163.02 Aligned_cols=243 Identities=18% Similarity=0.244 Sum_probs=167.4
Q ss_pred CCCccEEEECcEEEeCCC--ceeeeEEEeCCEEEEe-eCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhh
Q 020079 50 QSSSKILIKGGTVVNAHH--QQIADVYVEDGIVVAV-QPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDD 126 (331)
Q Consensus 50 ~~~~~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~i-g~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~ 126 (331)
.+.++++++|+++++.-. +..++|+|.+|+|+.| ++.. .++.++||+.|+++.|||||.|+|+..+ ..+|..
T Consensus 21 ~~~adlv~~ng~ivdv~~gei~~~dIaI~~grI~~v~~~~~--~e~~~~iDa~g~yivPGfID~H~HIESS---m~tP~~ 95 (584)
T COG1001 21 RAKADLVLKNGRIVDVVTGEIYKGDIAIAGGRIVGVIGEYR--AEATEVIDAAGRYIVPGFIDAHLHIESS---MLTPSE 95 (584)
T ss_pred CCCCCEEEECCEEEEeeeccEEeeeEEEECCEEEEeecCcC--cccceeecCCCCEeccceeecceecccc---ccCHHH
Confidence 345789999999998653 5688999999999995 4432 3567999999999999999999999875 467788
Q ss_pred HHHHHHHHHhCCceEEe-cCcCCCCCcHHHHHHHHHHHhccceeeccccccccCC----C----hhhHHHHHHHHHHhCC
Q 020079 127 FFSGQAAALAGGTTMHI-DFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKW----D----EVVSDEMEVMVKEKGI 197 (331)
Q Consensus 127 ~~~~~~~~l~~GvTtv~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~g~ 197 (331)
| ++..+..||||++ |.+...+....++++.+.+.....++++++..+.... + .-..+.++++.+...+
T Consensus 96 F---A~~Vlp~GtTtvV~DPHEIaNV~G~~Gi~~ml~~a~~~pl~~~~~~pScVPat~~Et~Ga~l~a~~i~e~~~~p~V 172 (584)
T COG1001 96 F---ARAVLPHGTTTVVSDPHEIANVLGEDGIRFMLDEAKETPLKVYVMLPSCVPATPFETSGAELTAEDIKELLEHPEV 172 (584)
T ss_pred H---HHHhhccCceEEeeCcHHHHhhccHHHHHHHHHHHhhCCeEEEEecccCccCCccccCCceecHHHHHHHhhCCCc
Confidence 7 7788999999987 6666555566777777777777777777665433211 1 1135677788856677
Q ss_pred CeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHH
Q 020079 198 NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIR 277 (331)
Q Consensus 198 ~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~ 277 (331)
-++..+|++.+...-+ +.+...++.++++|+++..|+...... ....|...|+...+- ....| ++++
T Consensus 173 igl~E~Mn~pgVi~~D-~~~l~kl~a~~~~~k~VdGHapgl~g~--~Ln~Y~aaGi~tDHE-----~~t~E-Ea~~---- 239 (584)
T COG1001 173 IGLGEMMNFPGVIEGD-PDMLAKLEAARKAGKPVDGHAPGLSGK--ELNAYIAAGISTDHE-----STTAE-EALE---- 239 (584)
T ss_pred cchhhhcCCchhccCC-HHHHHHHHHHHHcCCeecccCCCCChH--HHHHHHhcCCCcCcc-----cCCHH-HHHH----
Confidence 7888888887665544 555577788999999999998765533 234566677755431 11112 2222
Q ss_pred HHHhcCCCEEEEeCCCHHHHH-HHHHHHHcCC-CEEEec
Q 020079 278 LAEFVNTPLYVVHVMSMDAME-EIAKARKAGP-NFLNTT 314 (331)
Q Consensus 278 l~~~~g~~~~i~H~~~~~~~~-~i~~~~~~Gi-~v~~~~ 314 (331)
.. +.|..+.+-+.|.+..++ +++...++|. ++..+|
T Consensus 240 kl-r~Gm~i~iReGS~a~dl~~l~~~i~e~~~~~~~lcT 277 (584)
T COG1001 240 KL-RLGMKIMIREGSAAKDLAALLPAITELGSRRVMLCT 277 (584)
T ss_pred HH-hCCcEEEEEcCchhhhHHHHHHHHhhcCCceEEEEC
Confidence 11 346667777776665554 4555566664 344333
No 81
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=99.81 E-value=6.9e-19 Score=161.23 Aligned_cols=190 Identities=18% Similarity=0.115 Sum_probs=131.0
Q ss_pred eecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHH-HHhccc-eeeccccccccC
Q 020079 103 VMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYE-KKAKNS-CMDYGFHMAITK 179 (331)
Q Consensus 103 v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~ 179 (331)
-+||+||.|+|+..+ +++..+.+++.++| |+++||....+. ...+.+.... +..... +.++.++.....
T Consensus 2 ~~Pg~iD~h~h~~~~-------~~~~~~~~aa~~gG-Ttvv~mpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 73 (335)
T cd01294 2 TIPRPDDMHLHLRDG-------AMLKLVLPYTARGF-SRAIVMPNLKPPVTTTADALAYRERILAADPGPNFTPLMTLYL 73 (335)
T ss_pred cCCCcceeEecCCCc-------hHHHHHHHHHHhCC-CEEEECCCCCCCCCCHHHHHHHHHHHHhcCCCCcEEEEEEEec
Confidence 379999999999753 88889999999999 999999765433 2333333332 222333 344443333211
Q ss_pred CChhhHHHHHHHHHHhCCCeEEEEEecC----CCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCC
Q 020079 180 WDEVVSDEMEVMVKEKGINSFKFFMAYK----GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITG 255 (331)
Q Consensus 180 ~~~~~~~~~~~~~~~~g~~~ik~~~~~~----~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~ 255 (331)
......++++++.+..|+.++|+|+... .....+.+.+..+++.+++.|+++.+|+|+.......
T Consensus 74 ~~~~~~~el~~~~~~~G~~g~Klf~~~~~~~~~~~~~d~~~l~~~~e~~~~~g~~V~vHaE~~~l~~~~----------- 142 (335)
T cd01294 74 TENTTPEELREAKKKGGIRGVKLYPAGATTNSQGGVTDLEKIYPVLEAMQKLGMPLLVHGEVPDFKIDV----------- 142 (335)
T ss_pred cCCCCHHHHHHHHHhCCceEEEEecCCCccCCCCCcCCHHHHHHHHHHHHHcCCeEEEecCCCcccccc-----------
Confidence 1122346777776334999999986421 1111256889999999999999999999986532100
Q ss_pred cccccccCChHHHHHHHHHHHHHHHhc-CCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079 256 PEGHALSRPPLLEGEATTRAIRLAEFV-NTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN 323 (331)
Q Consensus 256 ~~~~~~~~~~~~e~~~i~~~~~l~~~~-g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~ 323 (331)
...|...+.+.+.+++++ ++++|++|+++.++++.++++|+ +|+++|||||+.+..
T Consensus 143 ---------~~~e~~~~~~~~~lA~~~p~~~v~i~Hvst~~~~~~i~~ak~---~vt~Et~ph~L~l~~ 199 (335)
T cd01294 143 ---------LDREAKFIPVLEPLAQRFPKLKIVLEHITTADAVEYVKSCNE---NVAATITPHHLLLTR 199 (335)
T ss_pred ---------hhhHHHHHHHHHHHHHHcCCCeEEEecccHHHHHHHHHhCCC---CcEEEEchhHheeeH
Confidence 011123446677888874 99999999999999999998876 899999999999774
No 82
>PRK10027 cryptic adenine deaminase; Provisional
Probab=99.81 E-value=8.8e-18 Score=162.15 Aligned_cols=231 Identities=17% Similarity=0.154 Sum_probs=155.3
Q ss_pred CccEEEECcEEEeCC--CceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhHHH
Q 020079 52 SSKILIKGGTVVNAH--HQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (331)
Q Consensus 52 ~~~~~i~n~~i~~~~--~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~ 129 (331)
+.+++|+|++|+++. ....++|+|+||+|++|++......+.++||++|++|+|||||+|+|+..+. .+++++
T Consensus 29 ~~dllI~ng~vv~~~~~~~~~~~V~I~~GrI~~Vg~~~~~~~~~~vIDa~G~~v~PGlIDaHvHiess~---~~p~~~-- 103 (588)
T PRK10027 29 VADYIIDNVSILDLINGGEISGPIVIKGRYIAGVGAEYADAPALQRIDARGATAVPGFIDAHLHIESSM---MTPVTF-- 103 (588)
T ss_pred CCCEEEECcEEEeCCCCcEEeeEEEEECCEEEEeCCCCCCCCCCeEEECCCCEEEECeEeccccCCccc---CCHhHH--
Confidence 467899999999864 3457899999999999976432223458999999999999999999999862 367777
Q ss_pred HHHHHHhCCceEEecCcCCCC-CcHHHHHHHHHHHhccceeeccccc----cccC-CC----hhhHHHHHHHHHHhCCCe
Q 020079 130 GQAAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAKNSCMDYGFHM----AITK-WD----EVVSDEMEVMVKEKGINS 199 (331)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~----~~~~~~~~~~~~~~g~~~ 199 (331)
.+.++.+||||++++..... ....+.++...+.....+.+.++.. +.+. .. .-..++++++.+..++-+
T Consensus 104 -a~aal~~G~TtVv~dPhei~nv~g~~gi~~~l~~a~~~p~~~~~~~ps~vpa~~~~Et~Ga~~~~~~~~~~l~~~~v~g 182 (588)
T PRK10027 104 -ETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVSSCVPALEGCDVNGASFTLEQMLAWRDHPQVTG 182 (588)
T ss_pred -HHHHHhCceEEEEcCCCCcccCCCHHHHHHHHHHhhhCCCeeEEeecccCcCCcccccCCCcCCHHHHHHHhcCCCcee
Confidence 44689999999997643322 2445666666655554444433322 2211 11 113577888886677888
Q ss_pred EEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHH
Q 020079 200 FKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLA 279 (331)
Q Consensus 200 ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~ 279 (331)
+...|++.+....+++.+.++... .++++..|+..... ..+..|...|+.+... +...| + ..+.
T Consensus 183 lgEvMn~~~V~~~d~~~~~ki~~~---~~~~idGH~p~l~g--~~L~ay~aaGi~sDHE-----~~t~e-e----a~ek- 246 (588)
T PRK10027 183 LAEMMDYPGVISGQNALLDKLDAF---RHLTLDGHCPGLGG--KELNAYIAAGIENCHE-----SYQLE-E----GRRK- 246 (588)
T ss_pred EEeccCccccccCCHHHHHHHHHh---CCCceECCCCCCCh--HHHHHHHHcCCCCCcc-----cCCHH-H----HHHH-
Confidence 899999888877788888888744 89999999865443 3335567778765431 11111 1 1122
Q ss_pred HhcCCCEEEEeCCCHHHHHHHHHHH
Q 020079 280 EFVNTPLYVVHVMSMDAMEEIAKAR 304 (331)
Q Consensus 280 ~~~g~~~~i~H~~~~~~~~~i~~~~ 304 (331)
...|..+.+-+.|....++.+..+.
T Consensus 247 lr~Gm~v~iRegS~~~nl~~l~~~~ 271 (588)
T PRK10027 247 LQLGMSLMIREGSAARNLNALAPLI 271 (588)
T ss_pred HHCCCEEEEeCCccccCHHHHHHHh
Confidence 2457778888887766656544443
No 83
>PRK07583 cytosine deaminase-like protein; Validated
Probab=99.81 E-value=4.3e-18 Score=161.40 Aligned_cols=256 Identities=19% Similarity=0.193 Sum_probs=141.5
Q ss_pred CccEEEECcEEEeC------------CCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCC
Q 020079 52 SSKILIKGGTVVNA------------HHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (331)
Q Consensus 52 ~~~~~i~n~~i~~~------------~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~ 119 (331)
...++|+|+++-+. +.....+|.|+||||++|++....+.+.++||++|++|+|||||+|+|++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~dg~i~~i~~~~~~~~~~~~id~~g~~v~Pg~id~H~Hld~~~~ 89 (438)
T PRK07583 10 SGRYWLKNARVPAALLEGGVPPGDTLEGLVLVDIEIADGKIAAILPAGGAPDELPAVDLKGRMVWPCFVDMHTHLDKGHI 89 (438)
T ss_pred CCcEEEeccccccccccCccCCCcCCCCcEEEEEEEECCEEEEEecCCCCCCCCceecCCCCcccCCcccceecccccee
Confidence 34589999986321 123467999999999999987543335689999999999999999999977521
Q ss_pred CC-----------------------CChhh----HHHHHHHHHhCCceEEecCcCCC-C--CcHHHHHHHHHHHhcc-c-
Q 020079 120 GS-----------------------ETIDD----FFSGQAAALAGGTTMHIDFVIPI-N--GSLTAGFEAYEKKAKN-S- 167 (331)
Q Consensus 120 ~~-----------------------~~~~~----~~~~~~~~l~~GvTtv~d~~~~~-~--~~~~~~~~~~~~~~~~-~- 167 (331)
.. .+.++ +..+.+.++.+|+|+++...... . ....+.+....+..+. .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~Gtt~vRt~vd~~~~~~~~~~~~i~~~~~~~~~~~~ 169 (438)
T PRK07583 90 WPRSPNPDGTFPGALDAVTADREAHWSAEDLYRRMEFGLRCAYAHGTSAIRTHLDSFAPQAAISWEVFAELREAWAGRIA 169 (438)
T ss_pred cCCCCCCCCCHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhChhhEEeeeccCCCCcccHHHHHHHHHHHhhccCe
Confidence 10 01233 44556778899999766543321 1 1222223222222211 1
Q ss_pred ---eeeccccccccCCChhhHHHHHHHHHHh-CCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhH
Q 020079 168 ---CMDYGFHMAITKWDEVVSDEMEVMVKEK-GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVF 242 (331)
Q Consensus 168 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~ 242 (331)
...+.++..... . .+++.+.+.+. |..+.+.++. ..+++.+.++++.|+++|+++.+|+ |+.....
T Consensus 170 ~~~v~~~p~~~~~~~---~-~~eL~~~v~~~~gv~g~~~~~~-----~~~d~~l~~i~~lA~~~G~~v~vH~~E~~~~~~ 240 (438)
T PRK07583 170 LQAVSLVPLDAYLTD---A-GERLADLVAEAGGLLGGVTYMN-----PDLDAQLDRLFRLARERGLDLDLHVDETGDPAS 240 (438)
T ss_pred EEEEEecChhhccCc---h-HHHHHHHHHHcCCEEeCCCCCC-----CCHHHHHHHHHHHHHHhCCCcEEeECCCCCchH
Confidence 111222222211 1 14455554233 3333222211 1256889999999999999999998 5544322
Q ss_pred H----HHHHHHHcCCCCcc--cccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHH-------------HHHHHH
Q 020079 243 E----GQKRMIELGITGPE--GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAM-------------EEIAKA 303 (331)
Q Consensus 243 ~----~~~~~~~~G~~~~~--~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~-------------~~i~~~ 303 (331)
. ..+.+.+.|..++. .|+....... .....+.++++++.|+.+..++.++.... ..++++
T Consensus 241 ~~l~~~~~~~~~~G~~~~v~i~H~~~l~~~~-~~~~~~~i~~la~~gv~vv~~P~~~~~l~~~~~~~~p~~~~~~~v~~l 319 (438)
T PRK07583 241 RTLKAVAEAALRNGFEGKVTCGHCCSLAVQP-EEQAQATIALVAEAGIAIVSLPMCNLYLQDRQPGRTPRWRGVTLVHEL 319 (438)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeccchhcCC-HHHHHHHHHHHHHcCCeEEECcchhhhhcCCCcCCCCCCCCcchHHHH
Confidence 2 22334455654432 1221111000 11224566677776765433333221100 136777
Q ss_pred HHcCCCEEEecCCc
Q 020079 304 RKAGPNFLNTTIPL 317 (331)
Q Consensus 304 ~~~Gi~v~~~~~p~ 317 (331)
+++|++|..++.-.
T Consensus 320 ~~aGV~valGtD~~ 333 (438)
T PRK07583 320 KAAGIPVAVASDNC 333 (438)
T ss_pred HHCCCeEEEEeCCC
Confidence 78888888777643
No 84
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.80 E-value=1.4e-18 Score=159.78 Aligned_cols=206 Identities=23% Similarity=0.188 Sum_probs=127.9
Q ss_pred eEEeCCCCeeecccccccccccCCCCCCCC----hhh-----HHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHh
Q 020079 94 KVLDATGKFVMPGGIDPHTHLAMEFMGSET----IDD-----FFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKA 164 (331)
Q Consensus 94 ~~id~~g~~v~PG~ID~H~H~~~~~~~~~~----~~~-----~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~ 164 (331)
++||++|++|||||||+|+|+......... .+. .....+.++++||||++|++........+.+......+
T Consensus 2 ~vID~~g~~v~PGliD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~g~~~~~~~~~~~~~g~~~g 81 (342)
T cd01299 2 QVIDLGGKTLMPGLIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTVRDAGGADYGLLRDAIDAGLIPG 81 (342)
T ss_pred cEEeCCCCEECCCeeeeeeeccccCCCccccccCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCcchHHHHHHHHcCCccC
Confidence 689999999999999999998764211110 111 12456778999999999997543221122222222222
Q ss_pred cccee------------eccc---------cccccCCChhhHHHHHHHHHHhCCCeEEEEEecCC--------CCcCCHH
Q 020079 165 KNSCM------------DYGF---------HMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKG--------SFMINDE 215 (331)
Q Consensus 165 ~~~~~------------~~~~---------~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~--------~~~~~~~ 215 (331)
++... ++.. +.......++..++++++. +.|++.+|+|+++.. ...++.+
T Consensus 82 Pr~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e 160 (342)
T cd01299 82 PRVFASGRALSQTGGHGDPRGLSGLFPAGGLAAVVDGVEEVRAAVREQL-RRGADQIKIMATGGVLSPGDPPPDTQFSEE 160 (342)
T ss_pred CceeecchhhcccCCCCccccccccccccCCcceecCHHHHHHHHHHHH-HhCCCEEEEeccCCcCCCCCCCcccCcCHH
Confidence 22111 1100 0111223455667777777 689999999986521 1257899
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-
Q 020079 216 LLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM- 294 (331)
Q Consensus 216 ~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~- 294 (331)
.++++++.|+++|+++.+|+.+...+. ...+.|....+ |.... -++.++++++.|+.+ +++...
T Consensus 161 ~l~~~~~~A~~~g~~v~~H~~~~~~i~----~~l~~G~~~i~-H~~~~--------~~~~~~~l~~~g~~~--~~t~~~~ 225 (342)
T cd01299 161 ELRAIVDEAHKAGLYVAAHAYGAEAIR----RAIRAGVDTIE-HGFLI--------DDETIELMKEKGIFL--VPTLATY 225 (342)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHH----HHHHcCCCEEe-ecCCC--------CHHHHHHHHHCCcEE--eCcHHHH
Confidence 999999999999999999997654443 33455654332 22111 123456677777654 444321
Q ss_pred -------------------------HHHHHHHHHHHcCCCEEEecC
Q 020079 295 -------------------------DAMEEIAKARKAGPNFLNTTI 315 (331)
Q Consensus 295 -------------------------~~~~~i~~~~~~Gi~v~~~~~ 315 (331)
.....+++++++|++|.+++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~GTD 271 (342)
T cd01299 226 EALAAEGAAPGLPADSAEKVALVLEAGRDALRRAHKAGVKIAFGTD 271 (342)
T ss_pred HHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecC
Confidence 234678899999999998775
No 85
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=99.78 E-value=1.6e-17 Score=154.96 Aligned_cols=245 Identities=16% Similarity=0.130 Sum_probs=133.8
Q ss_pred eeeeEEEeCCEEEEeeCCCCCC--CCceEEeCCCCeeecccccccccccCCCCCC-------------------------
Q 020079 69 QIADVYVEDGIVVAVQPNINVG--DDVKVLDATGKFVMPGGIDPHTHLAMEFMGS------------------------- 121 (331)
Q Consensus 69 ~~~~v~i~~g~I~~ig~~~~~~--~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~------------------------- 121 (331)
++++|+|+||+|++||+....+ .+.++||++|++|||||||+|+|+.+.....
T Consensus 2 ~~~~v~i~~g~I~~vg~~~~~~~~~~~~~iD~~g~~v~PGlin~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (377)
T TIGR01224 2 EDAVILIHGGKIVWIGQLAALPGEEATEIIDCGGGLVTPGLVDPHTHLVFAGDRVNEFEMKLQGASYLEILAQGGGILST 81 (377)
T ss_pred CceEEEEECCEEEEEechhhCCcccCCeEEeCCCCEEcccEEecccCccccCCcHHHHHHHhCCCCHHHHHHhcCChHHH
Confidence 5789999999999999843222 2568999999999999999999997531100
Q ss_pred ------CChhhHHH----HHHHHHhCCceEEecCcCCCCC--cHHHHHHHHHHHhccceeeccc---cc-ccc----CCC
Q 020079 122 ------ETIDDFFS----GQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKNSCMDYGF---HM-AIT----KWD 181 (331)
Q Consensus 122 ------~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~-~~~----~~~ 181 (331)
.++++++. ....++++|||++.+....... .....++..++...+..+.... .. ... ...
T Consensus 82 ~~~~~~~~~ed~~~~a~~~~~e~l~~Gvt~ve~~~~~g~~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 161 (377)
T TIGR01224 82 VRATRAASEEELLKLALFRLKSMLRSGTTTAEVKSGYGLDLETELKMLRAAKALHEEQPVDVVTTFLGAHAVPPEFQGRP 161 (377)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHCCceEEEecccCCCCHHHHHHHHHHHHHHHhhCCCceEeeeeecccCCccccCCH
Confidence 11222222 2345688999998432111111 1122333333333322111110 00 000 011
Q ss_pred hhhHHHH-HHHHH---Hh-CCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCc
Q 020079 182 EVVSDEM-EVMVK---EK-GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGP 256 (331)
Q Consensus 182 ~~~~~~~-~~~~~---~~-g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~ 256 (331)
++..+.. +.+.+ .. ++.+++.+ +++ ...+.+.++++++.|+++|+++++|+....... ..+.+.+.|....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~--~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~~-~~~~~~~~g~~~~ 237 (377)
T TIGR01224 162 DDYVDGICEELIPQVAEEGLASFADVF-CEA--GVFSVEQSRRILQAAQEAGLPVKLHAEELSNLG-GAELAAKLGAVSA 237 (377)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCeeEEE-ecC--CCcCHHHHHHHHHHHHHCCCCEEEEecCCCCCC-HHHHHHHcCCCcc
Confidence 1111111 11221 22 35555543 232 234678999999999999999999974322111 1223334554433
Q ss_pred ccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecC--Cccccchhhhhhh
Q 020079 257 EGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTI--PLCDSCSNIIRMV 328 (331)
Q Consensus 257 ~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~--p~~~~~~~~~~~~ 328 (331)
. |+... -++.++++++.|+. ++||+.. .....++++.++|+++++++. |..+...++..++
T Consensus 238 ~-H~~~~--------~~~~l~~la~~g~~--~~~~P~~~~~l~~~~~p~~~l~~~Gv~v~lgTD~~~~~~~~~~~~~~~ 305 (377)
T TIGR01224 238 D-HLEHA--------SDAGIKALAEAGTV--AVLLPGTTFYLRETYPPARQLIDYGVPVALATDLNPGSSPTLSMQLIM 305 (377)
T ss_pred H-HHhcC--------CHHHHHHHHhcCCE--EEECchHHHhcCCcCccHHHHHHCCCCEEEECCCCCCCChhHHHHHHH
Confidence 2 22211 13456677777876 4555442 235678999999999988775 4233334454443
No 86
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=99.78 E-value=4.4e-17 Score=152.40 Aligned_cols=248 Identities=15% Similarity=0.105 Sum_probs=134.4
Q ss_pred EEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCC--CCceEEeCCCCeeecccccccccccCCCCC-CCChhhHHHHH
Q 020079 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG--DDVKVLDATGKFVMPGGIDPHTHLAMEFMG-SETIDDFFSGQ 131 (331)
Q Consensus 55 ~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~--~~~~~id~~g~~v~PG~ID~H~H~~~~~~~-~~~~~~~~~~~ 131 (331)
++|+|++|++++...+++|+|+||+|++|++....+ ++.++||++|++|+|||||+|+|+...... .....+.....
T Consensus 2 ~~i~~~~v~~~~~~~~~~v~i~~g~I~~v~~~~~~~~~~~~~~id~~g~~v~PG~id~H~H~~~~~~~~~~~~~~~~~~~ 81 (387)
T cd01308 2 TLIKNAEVYAPEYLGKKDILIAGGKILAIEDQLNLPGYENVTVVDLHGKILVPGFIDQHVHIIGGGGEGGPSTRTPEVTL 81 (387)
T ss_pred EEEECcEEeCCCCccceEEEEECCEEEEEeCCcccccCCCCeEEECCCCEEccCeeehhhCcccccCCCcccccCHHHHH
Confidence 579999999977677889999999999999865322 356899999999999999999998753100 00112222445
Q ss_pred HHHHhCCceEEecCcCCCCC-cHH----HHHHHHHHHhccceeeccccccccCCChhh-HHHHHHHHHH-hCCCeEEEEE
Q 020079 132 AAALAGGTTMHIDFVIPING-SLT----AGFEAYEKKAKNSCMDYGFHMAITKWDEVV-SDEMEVMVKE-KGINSFKFFM 204 (331)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~g~~~ik~~~ 204 (331)
..++++|+||++|+....+. ... +..+...+.+.+......+.........+. ..++.. .++ .+ .+.. ..
T Consensus 82 ~~~~~~G~tt~~d~~~~~~~~~~~~~~~~~~~~~~~~Gv~~v~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~-~g~~-~~ 158 (387)
T cd01308 82 SDLTTAGVTTVVGCLGTDGISRSMEDLLAKARALEEEGITCFVYTGSYEVPTRTITGSIRKDLLL-IDKVIG-VGEI-AI 158 (387)
T ss_pred HHHHhCCceEEecCcCCCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCcCchhhHHHHHHH-HHHhcC-cceE-EE
Confidence 67799999999998732221 112 223333444444333322111000001111 112222 212 12 1111 11
Q ss_pred ecCCCCcCCHHHHHHHHHHHHHcCC------cEEEEc-CCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHH
Q 020079 205 AYKGSFMINDELLIEGFKRCKSLGA------LAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIR 277 (331)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~~A~~~g~------~v~~H~-e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~ 277 (331)
............+.++.+.++..+. .+++|. +....++...+.+.+.|..-.+....+.....+ ..+..++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vh~~~~~~~~~~i~~~~~~~G~~~~~~~~~~~~~~~~--~~~~~~~ 236 (387)
T cd01308 159 SDHRSSQPTVEELARIAAEARVGGLLGGKAGIVHIHLGDGKRALSPIFELIEETEIPITQFLPTHINRTAP--LFEQGVE 236 (387)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCchHHHHHHHHHHHhcCCCcceeECCcccCCHH--HHHHHHH
Confidence 2222234567777788888876443 477776 344555555555666576322221111111111 1122333
Q ss_pred HHHhcCCCEEEEeCCCH--------HHHHHHHHHHHcCC
Q 020079 278 LAEFVNTPLYVVHVMSM--------DAMEEIAKARKAGP 308 (331)
Q Consensus 278 l~~~~g~~~~i~H~~~~--------~~~~~i~~~~~~Gi 308 (331)
.++ .|..+.+.+.++. ...+.++.+.+.|+
T Consensus 237 ~~~-~G~~v~i~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 274 (387)
T cd01308 237 FAK-MGGTIDLTSSIDPQFRKEGEVRPSEALKRLLEQGV 274 (387)
T ss_pred HHH-cCCcEEEECCCCccccccCccChHHHHHHHHHhCC
Confidence 333 4555556654433 24577778878875
No 87
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=99.77 E-value=7.5e-17 Score=149.64 Aligned_cols=242 Identities=21% Similarity=0.183 Sum_probs=132.7
Q ss_pred cEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCC-CeeecccccccccccCCCCCCCChhhHHHHHH
Q 020079 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATG-KFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132 (331)
Q Consensus 54 ~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g-~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~ 132 (331)
+++|+|++|+++. ..+|+|+||||++|++.... ++.++||++| ++|+|||||+|+|+..+ +....++. ..
T Consensus 2 ~~~i~n~~i~~~~---~~~v~i~~g~I~~v~~~~~~-~~~~~iD~~g~~~l~PG~ID~H~H~~~~--~~~~~~~~---~~ 72 (365)
T TIGR03583 2 DLLIKNGRTVNGT---PVDIAIEDGKIAAVGTTITG-SAKQTIDLEGETYVSAGWIDDHTHCFPK--SALYYDEP---DE 72 (365)
T ss_pred cEEEECcEEecCC---eeEEEEECCEEEEecCCCCC-CCCeEEECCCCeEEecCEEEeeeccCCC--cccccCCH---hH
Confidence 4899999999853 45899999999999874332 2458999999 99999999999999854 22233333 24
Q ss_pred HHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccc--eeeccccccc--c---CCChhhHHHHHHHHHHh--CCCeEEEE
Q 020079 133 AALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNS--CMDYGFHMAI--T---KWDEVVSDEMEVMVKEK--GINSFKFF 203 (331)
Q Consensus 133 ~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~--g~~~ik~~ 203 (331)
.++++|||+++++............+..++...+. .+++...+.. . .......++++++.++. ++.++|.+
T Consensus 73 ~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~vv~~~~~ 152 (365)
T TIGR03583 73 IGVKTGVTTVVDAGSTGADDIDDFYRLAQQAKTNVFALLNISRIGLVAQDELADLSNLDASAVKQAVERYPDFIVGLKAR 152 (365)
T ss_pred hhhcCceeEEEeCCCCCCCCHHHHHHHHHhhCCcEEEEeeehhccccChhhhhChHHhHHHHHHHHHHhCcCcEEEEEEe
Confidence 46889999999976433333333333332222122 1222211111 0 11122345555555332 24566777
Q ss_pred EecCC--CCcCCHHHHHHHHHHHHHcCCcEEEEcCCch-hhHHHHHHHHHcCCCCcccccc-cCC--hHHHHHHHHHHHH
Q 020079 204 MAYKG--SFMINDELLIEGFKRCKSLGALAMVHAENGD-AVFEGQKRMIELGITGPEGHAL-SRP--PLLEGEATTRAIR 277 (331)
Q Consensus 204 ~~~~~--~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~-~~~~~~~~~~~~G~~~~~~~~~-~~~--~~~e~~~i~~~~~ 277 (331)
+++.. ....++..+.+.+..+ +.++|+.+|++... ...+..+. ...|. . -.|+. +.+ ...+...+.+.+.
T Consensus 153 ~t~~~i~E~gl~~~~~~~~l~~~-~~~~pv~vH~~~a~~~~~~i~~~-~~~g~-~-~~H~fng~~~~~~r~~g~~~~~~~ 228 (365)
T TIGR03583 153 MSKSVVGDNGIEPLEIAKQIQQE-NLELPLMVHIGSAPPELDEILAL-MEKGD-V-LTHCFNGKPNGILRETGEVKPSVL 228 (365)
T ss_pred ecccccccCCcCHHHHHHHHHHh-cCCCcEEEEeCCCccCHHHHHHH-hcCCC-e-eeeeecCCCCCCCCCcchHHHHHH
Confidence 76431 1223355555555544 68999999985543 33333333 23342 1 12221 111 0011111222333
Q ss_pred HHHhcCCCEEEEeCCCHHHHHHHHHHHHcCC
Q 020079 278 LAEFVNTPLYVVHVMSMDAMEEIAKARKAGP 308 (331)
Q Consensus 278 l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi 308 (331)
.....|.-+.+.|......++....++..++
T Consensus 229 ~~l~~G~i~d~~hg~~~~~~~~~~~~~~~~~ 259 (365)
T TIGR03583 229 EAYNRGVILDVGHGTASFSFHVAEKAKRAGI 259 (365)
T ss_pred HHHhCeEEEEeCCCCCCchHHHHHHHHhCCC
Confidence 3445577777776433444455666666564
No 88
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=99.76 E-value=1.7e-17 Score=154.29 Aligned_cols=232 Identities=21% Similarity=0.154 Sum_probs=130.9
Q ss_pred EEEeCCEEEEeeCCCCCC----CCceEEeCCCCeeecccccccccccCCCC----------CC-----------------
Q 020079 73 VYVEDGIVVAVQPNINVG----DDVKVLDATGKFVMPGGIDPHTHLAMEFM----------GS----------------- 121 (331)
Q Consensus 73 v~i~~g~I~~ig~~~~~~----~~~~~id~~g~~v~PG~ID~H~H~~~~~~----------~~----------------- 121 (331)
|+|+||+|++|++....+ .+.++||++|++|+|||||+|+|+++... +.
T Consensus 1 i~i~~g~I~~ig~~~~~~~~~~~~~~~iD~~G~~v~Pg~vn~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (371)
T cd01296 1 IAIRDGRIAAVGPAASLPAPGPAAAEEIDAGGRAVTPGLVDCHTHLVFAGDRVDEFAARLAGASYEEILAAGGGILSTVR 80 (371)
T ss_pred CEEECCEEEEEeCchhcccccCCCceEEECCCCEEecceeecCCCCcCCCCcHHHHHHHHCCCCHHHHHHcCCChHHHHH
Confidence 579999999999864322 35689999999999999999999977421 10
Q ss_pred ----CChhhHH----HHHHHHHhCCceEEecCcCCCCC--cHHHHHHHHHHHhcc--ceeecccc--ccccC---CChhh
Q 020079 122 ----ETIDDFF----SGQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKN--SCMDYGFH--MAITK---WDEVV 184 (331)
Q Consensus 122 ----~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~---~~~~~ 184 (331)
.++++++ .....++++|||++++....... ...+.++..++...+ ..+...+. ..... ..++.
T Consensus 81 ~~~~~~~~d~~~~a~~~~~~~~~~Gvt~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~ 160 (371)
T cd01296 81 ATRAASEDELFASALRRLARMLRHGTTTVEVKSGYGLDLETELKMLRVIRRLKEEGPVDLVSTFLGAHAVPPEYKGREEY 160 (371)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHCCceEEEecccCCCCHHHHHHHHHHHHHHHhhCCCceEeeeeecccCCcccCChHHH
Confidence 1223332 23455788999999984221111 122334444443332 11111111 01110 01111
Q ss_pred ----HHHHHHHH-HHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccc
Q 020079 185 ----SDEMEVMV-KEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGH 259 (331)
Q Consensus 185 ----~~~~~~~~-~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~ 259 (331)
.+++.+.. .+.+..+++.+.. . ...+.+.++++++.|+++|+++++|+........ .+...+.|.... .|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~~~-~~~~~~~g~~~i-~H 235 (371)
T cd01296 161 IDLVIEEVLPAVAEENLADFCDVFCE-K--GAFSLEQSRRILEAAKEAGLPVKIHADELSNIGG-AELAAELGALSA-DH 235 (371)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEeec-C--CccCHHHHHHHHHHHHHCCCeEEEEEcCcCCCCH-HHHHHHcCCCee-HH
Confidence 12222211 1245667776532 2 2346889999999999999999999843321111 122334554432 22
Q ss_pred cccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHcCCCEEEecC--Cccc
Q 020079 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKAGPNFLNTTI--PLCD 319 (331)
Q Consensus 260 ~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~Gi~v~~~~~--p~~~ 319 (331)
+.... .+.++++++.|+. +++|+.. .....++++.++|++++.++. |...
T Consensus 236 ~~~~~--------~~~i~~la~~g~~--v~~~P~~~~~l~~~~~~~~~l~~~Gv~v~lgsD~~p~~~ 292 (371)
T cd01296 236 LEHTS--------DEGIAALAEAGTV--AVLLPGTAFSLRETYPPARKLIDAGVPVALGTDFNPGSS 292 (371)
T ss_pred hcCCC--------HHHHHHHHHcCCe--EEEChHHHHHhCCCCCCHHHHHHCCCcEEEecCCCCCCC
Confidence 22211 2456677777776 4555432 123568899999999987764 5543
No 89
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=99.75 E-value=5.5e-17 Score=150.73 Aligned_cols=191 Identities=19% Similarity=0.236 Sum_probs=123.9
Q ss_pred EEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCC-CCCChhhHHHHHHHH
Q 020079 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GSETIDDFFSGQAAA 134 (331)
Q Consensus 56 ~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~~~~~~~~~~~~~~~ 134 (331)
+|+|++|+++....+++|+|+||+|+.|++....+...++||++|++|+|||||+|+|...... ....++.+....+.+
T Consensus 2 ~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~~~~~~~vid~~g~~l~PG~iD~H~H~~~g~~~~~~~~e~~~~~~~~~ 81 (374)
T cd00854 2 IIKNARILTPGGLEDGAVLVEDGKIVAIGPEDELEEADEIIDLKGQYLVPGFIDIHIHGGGGADFMDGTAEALKTIAEAL 81 (374)
T ss_pred EEEeEEEeCCCEEcccEEEEECCEEEEecCCCCcccCCcEEECCCCEecccEEEeeecccCCCCCCCCCHHHHHHHHHHH
Confidence 7899999988445678999999999999986443334589999999999999999999865321 122467888889999
Q ss_pred HhCCceEEecCcCCCCC-cHHHHHHHHHHHhccc--eeecccc--ccccC------CCh-----hhHHHHHHHHHHhCCC
Q 020079 135 LAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNS--CMDYGFH--MAITK------WDE-----VVSDEMEVMVKEKGIN 198 (331)
Q Consensus 135 l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~------~~~-----~~~~~~~~~~~~~g~~ 198 (331)
+++|||+++++....+. ...+.+..+++..... ...++++ ++... .+. ...++++++. +.+.+
T Consensus 82 ~~~GvTtv~~t~~t~~~~~~~~~l~~~~~~~~~~~g~~~~g~hleGP~~~~~~~g~h~~~~~~~~~~~~~~~~~-~~~~~ 160 (374)
T cd00854 82 AKHGTTSFLPTTVTAPPEEIAKALAAIAEAIAEGQGAEILGIHLEGPFISPEKKGAHPPEYLRAPDPEELKKWL-EAAGG 160 (374)
T ss_pred HccCcceeeccccCCCHHHHHHHHHHHHHHhhcCCCCeeEEEeeecCccCcccCCCCCHHHcCCcCHHHHHHHH-HhcCC
Confidence 99999999988643332 3334444443322111 1111111 11110 011 1235677777 45557
Q ss_pred eEEEEEecCCCCcCCHHHH--HHHHHHHHHcCCcEE-EEcC-CchhhHHHHHHHHHcCCCCccc
Q 020079 199 SFKFFMAYKGSFMINDELL--IEGFKRCKSLGALAM-VHAE-NGDAVFEGQKRMIELGITGPEG 258 (331)
Q Consensus 199 ~ik~~~~~~~~~~~~~~~l--~~~~~~A~~~g~~v~-~H~e-~~~~~~~~~~~~~~~G~~~~~~ 258 (331)
.+|.+. ..+|.. .++++.++++|+++. .|.. +..... ...+.|.....+
T Consensus 161 ~ik~~t-------laPE~~~~~~~i~~~~~~gi~v~~GH~~a~~~~~~----~a~~~G~~~~tH 213 (374)
T cd00854 161 LIKLVT-------LAPELDGALELIRYLVERGIIVSIGHSDATYEQAV----AAFEAGATHVTH 213 (374)
T ss_pred CEEEEE-------ECCCCCChHHHHHHHHHCCeEEEeeCCcCCHHHHH----HHHHcCCCeeeE
Confidence 788762 344555 789999999999995 9975 323332 234556655443
No 90
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=99.74 E-value=1.1e-16 Score=152.07 Aligned_cols=66 Identities=30% Similarity=0.596 Sum_probs=56.8
Q ss_pred CCccEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCC----CCCceEEeCCCCeeecccccccccccC
Q 020079 51 SSSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINV----GDDVKVLDATGKFVMPGGIDPHTHLAM 116 (331)
Q Consensus 51 ~~~~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~----~~~~~~id~~g~~v~PG~ID~H~H~~~ 116 (331)
++.++++.|++|++++. ..-..|.|+||||.+||+..+. .+.+++||++|++|+|||||+|.|+..
T Consensus 3 ~~adlil~nG~i~T~~~~~p~aeAvaI~dGrI~avG~~~~~~~~~~~~t~viDL~Gk~v~PGfvDaH~Hl~~ 74 (535)
T COG1574 3 MAADLILHNGRIYTMDEARPTAEAVAIKDGRIVAVGSDAELKALAGPATEVIDLKGKFVLPGFVDAHLHLIS 74 (535)
T ss_pred cccceeEECCEEEeccCCCcceeEEEEcCCEEEEEcChHHHHhhcCCCceEEeCCCCEeccccchhhHHHHH
Confidence 56789999999999885 4577999999999999986432 246799999999999999999999854
No 91
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=99.72 E-value=2.3e-16 Score=145.83 Aligned_cols=110 Identities=17% Similarity=0.248 Sum_probs=83.7
Q ss_pred ccEEEECcEEEeCCCc-eeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCC-CCCChhhHHHH
Q 020079 53 SKILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GSETIDDFFSG 130 (331)
Q Consensus 53 ~~~~i~n~~i~~~~~~-~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~-~~~~~~~~~~~ 130 (331)
.+++|+|++|++++.. .+++|.|+||+|++|++....+++.++||++|++|+|||||+|+|...... ...+.+++...
T Consensus 3 ~~~~i~n~~i~~~~~~~~~~~i~V~dGkI~~I~~~~~~~~~~~viD~~G~~i~PGfID~HvHg~~g~~~~~~~~e~~~~~ 82 (380)
T TIGR00221 3 ESYLLKDIAIVTGNEVIDNGAVGINDGKISTVSTEAELEPEIKEIDLPGNVLTPGFIDIHIHGCGGVDTNDASFETLEIM 82 (380)
T ss_pred ceEEEEeeEEECCCCEEeccEEEEECCEEEEEcccccCCCCCeEEECCCCEEccceeeeeeccccCcCCCCCCHHHHHHH
Confidence 4589999999997764 468999999999999875433334589999999999999999999865311 12355888888
Q ss_pred HHHHHhCCceEEecCcCCCCC-cHHHHHHHHHH
Q 020079 131 QAAALAGGTTMHIDFVIPING-SLTAGFEAYEK 162 (331)
Q Consensus 131 ~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~ 162 (331)
.+.++++|||+++++....+. ...+.++.+.+
T Consensus 83 ~~~~~~~GvTt~l~t~~t~~~~~~~~~l~~~~~ 115 (380)
T TIGR00221 83 SERLPKSGCTSFLPTLITQPDENIKQAVKNMRE 115 (380)
T ss_pred HHHHHhcCeeEEeeeccCCCHHHHHHHHHHHHH
Confidence 999999999999987644432 34445555444
No 92
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.70 E-value=7.8e-16 Score=142.99 Aligned_cols=250 Identities=20% Similarity=0.157 Sum_probs=132.1
Q ss_pred ccEEEECcEEEeC-CCceeeeEEEeCCEEEEeeCC-CCCCCCceEEeCCCCeeecccccccccccCCCCCC------CCh
Q 020079 53 SKILIKGGTVVNA-HHQQIADVYVEDGIVVAVQPN-INVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS------ETI 124 (331)
Q Consensus 53 ~~~~i~n~~i~~~-~~~~~~~v~i~~g~I~~ig~~-~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~------~~~ 124 (331)
..+++.+++.++. ...+++.|+|+||||++||+. ...+++.++||++|++|+|||||+|+|+...-.+. ...
T Consensus 10 ~~~~~~~~~~~~~~~~i~~~~v~i~~GkI~~vg~~~~~~~~~~~viD~~G~~V~PGLID~HtHl~~~~~~~~~~~~~~~~ 89 (406)
T COG1228 10 AMLATLAGRGLPGLGIIEDGAVLIEDGKIVAVGPEEIDIPAGAEVIDAKGKTVTPGLIDAHTHLGFGGSRGGEFELREAG 89 (406)
T ss_pred hhheeeccccCCCcceeecceEEEECCEEEEecCcccCCCCCCeEEeCCCCEEccceeeccccccccCCccchhhhcccC
Confidence 3477888888773 345679999999999999987 45556789999999999999999999998741000 000
Q ss_pred hh-----------------------------HHHHHHHHHhCCceEEecCcCCCCC--cHHHHHHHHHHHhccceeeccc
Q 020079 125 DD-----------------------------FFSGQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKNSCMDYGF 173 (331)
Q Consensus 125 ~~-----------------------------~~~~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 173 (331)
.. .......+++.|+|+.-........ ......+.........+.....
T Consensus 90 ~~~~~i~~~~~gi~~~~~~~~~a~~~g~~~~~~~~l~~~~~~g~~~~e~~~~~g~~~~~e~~~~~~~~~~~~~~~~~~~~ 169 (406)
T COG1228 90 ASYTEILAAGGGILPLDRGFTTARDGGLKATALPRLKRAGSAGVTTGERKSGYGLDLETEGGHLRAAAGLKESRPVAVGS 169 (406)
T ss_pred ccHHHHHHhcCChhhhHHHHHHHhhcchHHHHHHHHHHHHHcCCcccceeeeecccccccccccchhhhccccccccccC
Confidence 00 0011123455677666543322211 0011111111111001111100
Q ss_pred -----ccccc--CCC-hhhHHHHHHHHHHhCCCeEEEEEe-cCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHH
Q 020079 174 -----HMAIT--KWD-EVVSDEMEVMVKEKGINSFKFFMA-YKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEG 244 (331)
Q Consensus 174 -----~~~~~--~~~-~~~~~~~~~~~~~~g~~~ik~~~~-~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~ 244 (331)
+.... ... +...+.+..+++.....++.-+.+ ......+++++++++++.|++.|+++.+|++..+...
T Consensus 170 t~~~~~~~~~~~~~~r~~~~~g~~~~i~~~a~~~l~~~~d~~~~~~~fs~~e~~~~l~~a~~~g~~v~~HA~~~~g~~-- 247 (406)
T COG1228 170 TPLAAHGVPEERKATREAYVAGARLLIKIVATGGLASFVDAFCEGGQFSPEEIRAVLAAALKAGIPVKAHAHGADGIK-- 247 (406)
T ss_pred ccccccCCcccccchHHHHHHHHHHHHHHHHhccccchhhccccccccCHHHHHHHHHHHHHCCCceEEEecccchHH--
Confidence 11100 111 111222222121111111111111 1223457889999999999999999999997666443
Q ss_pred HHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHh--cCCCE-EEEeCCC----HHHHHHHHHHHHcCCCEEEecC
Q 020079 245 QKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEF--VNTPL-YVVHVMS----MDAMEEIAKARKAGPNFLNTTI 315 (331)
Q Consensus 245 ~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~--~g~~~-~i~H~~~----~~~~~~i~~~~~~Gi~v~~~~~ 315 (331)
...+.|.....+.. ..-.+.+.++.+ .|.++ .+.+-.. ....+.++++++.|++|...|.
T Consensus 248 --~A~~~g~~s~~H~~---------~ld~~~~~~~a~~~~g~~~~~l~p~~~~~l~e~~~~~~~~l~~~GV~vai~TD 314 (406)
T COG1228 248 --LAIRLGAKSAEHGT---------LLDHETAALLAEKGAGTPVPVLLPRTKFELRELDYKPARKLIDAGVKVAIGTD 314 (406)
T ss_pred --HHHHhCcceehhhh---------hcCHhHHHHHhhccCCCccccccchhhhhhhcccchhHHHHHHCCCEEEEEcC
Confidence 33455554433211 111233455556 66541 1111111 2234568999999999987655
No 93
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=99.67 E-value=2.5e-15 Score=139.32 Aligned_cols=108 Identities=18% Similarity=0.220 Sum_probs=79.7
Q ss_pred EEEECcEEEeCCCc-eeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCC-----CCChhhHH
Q 020079 55 ILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-----SETIDDFF 128 (331)
Q Consensus 55 ~~i~n~~i~~~~~~-~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~-----~~~~~~~~ 128 (331)
++|+|++|++++.. .+++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|......- ..+.+.++
T Consensus 2 ~~i~n~~i~~~~~~~~~~~v~IedgkI~~I~~~~~~~~~~~~ID~~G~~l~PG~ID~HvHG~~g~~~~~~~~~~~~~~l~ 81 (382)
T PRK11170 2 YALTNGRIYTGHEVLDDHAVVIADGLIEAVCPVAELPPGIEQRDLNGAILSPGFIDLQLNGCGGVQFNDTAEAISVETLE 81 (382)
T ss_pred EEEEeeEEECCCCeEeCCEEEEECCEEEEecCCccCCCCCeEEeCCCCEEccceeeeeecCccCcccccCccCCCHHHHH
Confidence 67999999998764 4679999999999998754333345899999999999999999997543211 12456777
Q ss_pred HHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHH
Q 020079 129 SGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEK 162 (331)
Q Consensus 129 ~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~ 162 (331)
...+.++++|||++.+.....+. ...+.++.+++
T Consensus 82 ~~~~~~~~~GvTt~lpT~it~~~~~~~~~l~~~~~ 116 (382)
T PRK11170 82 IMQKANEKSGCTSFLPTLITSSDELMKQAVRVMRE 116 (382)
T ss_pred HHHHHHHhcCEeEEeeeccCCCHHHHHHHHHHHHH
Confidence 77788899999999977544332 33444444443
No 94
>KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.67 E-value=7.2e-16 Score=138.05 Aligned_cols=243 Identities=16% Similarity=0.076 Sum_probs=147.1
Q ss_pred eeeeEEEeC-CEEEEeeCCCCCC----------CCceEEeCCCCeeecccccccccccCCC----C--------------
Q 020079 69 QIADVYVED-GIVVAVQPNINVG----------DDVKVLDATGKFVMPGGIDPHTHLAMEF----M-------------- 119 (331)
Q Consensus 69 ~~~~v~i~~-g~I~~ig~~~~~~----------~~~~~id~~g~~v~PG~ID~H~H~~~~~----~-------------- 119 (331)
++..+.|.| |||..|++....+ +..++++.+|+++||||||+|+|....+ .
T Consensus 26 e~~sl~Vd~~GKi~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~mPGfVdtH~H~a~q~~~s~~g~d~pll~wl~~~~ 105 (439)
T KOG3968|consen 26 EGSSLGVDDTGKIVFIGKAYFDENKLKGEGVEKENTKIKLSSGHFLMPGFVDTHIHPAHQFAMSGAGTDMPLLQWLGKYT 105 (439)
T ss_pred cCcceeecCCccEEEeeccccchhhhcccccccccceeeecCCcEEecceeecccchHhhhhhhccccCcHHHHHhhcce
Confidence 356678876 9999999854221 2457899999999999999999932110 0
Q ss_pred ----CCCCh-hhHH----HHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccc--cc--cccC---CChh
Q 020079 120 ----GSETI-DDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGF--HM--AITK---WDEV 183 (331)
Q Consensus 120 ----~~~~~-~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~---~~~~ 183 (331)
+..+. ++.+ ...+..+++|+||+.-............++.....+.|..+.... .. +... ..++
T Consensus 106 f~le~~~~~~e~~~q~~~~vv~~mL~~GTTt~~~f~~~~~~s~~ll~~~~~~~G~R~~igkv~m~~~~~~~p~~~~~~E~ 185 (439)
T KOG3968|consen 106 FPLEATFTNEEDARQVYQRVVKEMLRAGTTTVEYFSTLHLDSELLLARAAIRAGQRALIGKVCMDCNAHAVPKGVETTEE 185 (439)
T ss_pred eecchhhhhHHHHHHHHHHHHHHHHHcCceehhhhhccCchhHHHHHHHHHHhCCceeeeeehhccCCCCCCccchhHHH
Confidence 11111 2222 334668999999998665433334445555666666664433211 01 1111 1122
Q ss_pred hHHHHHHHHH---HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHHH----------HHH
Q 020079 184 VSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQK----------RMI 249 (331)
Q Consensus 184 ~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~~----------~~~ 249 (331)
..+..+++.. +.+.......+.+.....|+.+.+....+.|+.++++++.|. |+.++++..+. .+.
T Consensus 186 si~~t~~~i~~~~~~~~~~~~~~vt~~fa~~c~k~v~~~l~~lak~~~l~~q~hIsen~~EI~~~~~ff~~~~~y~~~yd 265 (439)
T KOG3968|consen 186 SIESTEDLIPKLEKLKREKVNPIVTPRFAASCSKGVFEELSKLAKYHNLHIQIHISENGKEIEAVKNFFPEKLSYTDVYD 265 (439)
T ss_pred HHHHHHHHHHHHHhhccCCCCCcccccccCCCcchhHHHHHHHHHhhhhhhhhhhhhcHHHHHHHHHhhhhcccchHHHH
Confidence 2333333331 122222222224445567899999999999999999999995 88999887762 266
Q ss_pred HcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC---HHHHHHHHHHHHcCCCEEE--ecCC
Q 020079 250 ELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS---MDAMEEIAKARKAGPNFLN--TTIP 316 (331)
Q Consensus 250 ~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~---~~~~~~i~~~~~~Gi~v~~--~~~p 316 (331)
+.|++++..-..+.. .--++.+++.++.|+.+..|++|+ .+++..++++.+.|+.|.+ |+|+
T Consensus 266 ~~~lL~~ktvlaH~~-----hl~d~ei~~l~k~g~svshCP~Sn~~L~sG~~~vr~lL~~~v~VgLGtDv~~ 332 (439)
T KOG3968|consen 266 KGGLLTEKTVLAHLE-----HLSDEEIELLAKRGCSVSHCPTSNSILGSGIPRVRELLDIGVIVGLGTDVSG 332 (439)
T ss_pred HhcccchHhHhhhhe-----ecCchhHHHHHhcCCceEECCcchhhhccCCccHHHHHhcCceEeecCCccc
Confidence 677777553222211 112345677788787644444433 4677889999999999875 4554
No 95
>PLN02599 dihydroorotase
Probab=99.67 E-value=2.2e-15 Score=138.04 Aligned_cols=191 Identities=16% Similarity=0.105 Sum_probs=133.1
Q ss_pred eeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhc-c--ceeeccccccc
Q 020079 102 FVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-N--SCMDYGFHMAI 177 (331)
Q Consensus 102 ~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~--~~~~~~~~~~~ 177 (331)
+.+|---|+|+|+.+. .+....--..++|+|++++|.+..+. ...+.+..+++... . ..+++.+++..
T Consensus 23 ~~~~~~~d~h~hlr~~--------~~~~~~~~~~~gg~t~~i~MPn~~Ppv~~~~~~~~~~~~~~~~~~~~vdf~~~~~l 94 (364)
T PLN02599 23 LTITRPDDWHLHLRDG--------AKLAAVVPHSARHFGRAIVMPNLKPPVTTTARALAYRERIMKALPPGSSFEPLMTL 94 (364)
T ss_pred EEecCCcceeeEccCc--------HHHHhhhHHhcCCcCEEEECCCCCCCcCCHHHHHHHHHHHhhhcCCCcceEEEEEE
Confidence 6689999999999875 22222334578999999999765433 45555555554443 3 34677766544
Q ss_pred cCCChhhHHHHHHHHHHhCCC-eEEEEEecCC---CCcC-CHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcC
Q 020079 178 TKWDEVVSDEMEVMVKEKGIN-SFKFFMAYKG---SFMI-NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELG 252 (331)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~g~~-~ik~~~~~~~---~~~~-~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G 252 (331)
........+++.++. +.|+. ++|+|+.... .... +.+.+..+++.+++.|+++.+|+|+.+.....
T Consensus 95 ~lt~~~~l~Ei~~~~-~~Gvv~gfKlyp~~~tt~s~~gv~d~~~l~~~le~~~e~G~~L~vH~E~~~~~~~~-------- 165 (364)
T PLN02599 95 YLTDNTTPEEIKAAK-ASGVVFAVKLYPAGATTNSQAGVTDLGKCLPVLEEMAEQGMPLLVHGEVTDPSVDI-------- 165 (364)
T ss_pred ecCCCCCHHHHHHHH-HCCCcEEEEECcccCcCCCccccCCHHHHHHHHHHHHhcCCEEEEecCCCcccccc--------
Confidence 222223457777775 78988 9999875321 1112 35889999999999999999999985431100
Q ss_pred CCCcccccccCChHHHHHHHHHHH--HHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079 253 ITGPEGHALSRPPLLEGEATTRAI--RLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN 323 (331)
Q Consensus 253 ~~~~~~~~~~~~~~~e~~~i~~~~--~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~ 323 (331)
...|...+.+.+ .+++..|.++|++|+|+.++++.++++|+ + +|++++||||+.+..
T Consensus 166 ------------~~~E~~~i~r~l~~~la~~~g~kI~i~HiSt~~~ve~v~~ak~-~-~vtae~tpHhL~l~~ 224 (364)
T PLN02599 166 ------------FDREKVFIDTILAPLVQKLPQLKIVMEHITTMDAVEFVESCGD-G-NVAATVTPQHLLLNR 224 (364)
T ss_pred ------------cccHHHHHHHHHHHHHHhccCCeEEEEecChHHHHHHHHhccC-C-CEEEEecHHHHhcCH
Confidence 001223355666 47777899999999999999999999884 4 999999999998764
No 96
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=99.65 E-value=3.3e-16 Score=108.86 Aligned_cols=67 Identities=49% Similarity=0.608 Sum_probs=47.8
Q ss_pred EEEeCCEEEEeeCCCCCC-CCceEEeCCCCeeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEE
Q 020079 73 VYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMH 142 (331)
Q Consensus 73 v~i~~g~I~~ig~~~~~~-~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv 142 (331)
|+|+||||++|++....+ +..++||++|++|+|||||+|+|+..+. ............++++|||||
T Consensus 1 V~I~~g~I~~v~~~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~---~~~~~~~~~~~~~l~~GvTTV 68 (68)
T PF13594_consen 1 VLIEDGKIVAVGPDSELPADAAEVIDAKGKYVMPGFIDMHTHLGEPG---WQSLDPETEAAAALAGGVTTV 68 (68)
T ss_dssp EEEETTEEEEEESSCCTTSTCCEEEEETTCEEEE-EEEEEE-TTTTC---EGGCTCHHHHHHHHHTTEEEE
T ss_pred CEEECCEEEEeCCCCCCCCCCCEEEECCCCEEeCCeEeeeecccccc---ccccchhhHHHHHHCcceeeC
Confidence 689999999997654433 4567899999999999999999987431 111112344566789999997
No 97
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=99.65 E-value=5.2e-15 Score=142.26 Aligned_cols=85 Identities=18% Similarity=0.126 Sum_probs=58.2
Q ss_pred CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEE
Q 020079 210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (331)
Q Consensus 210 ~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~ 289 (331)
..++++.+.++++.|+++|+++++|+.+...+....+.+ ++........+.+..+.
T Consensus 290 ~~~~~e~l~~~~~~a~~~g~~v~~Ha~gd~~i~~~l~~~------------------------~~~~~~~g~~~~r~~i~ 345 (479)
T cd01300 290 LLISPEELEELVRAADEAGLQVAIHAIGDRAVDTVLDAL------------------------EAALKDNPRADHRHRIE 345 (479)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEecHHHHHHHHHHH------------------------HHHHHhcCCCCCCceee
Confidence 356899999999999999999999997655544332221 11111111225678899
Q ss_pred eCCCHHHHHHHHHHHHcCCCEEEecCCccccc
Q 020079 290 HVMSMDAMEEIAKARKAGPNFLNTTIPLCDSC 321 (331)
Q Consensus 290 H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~ 321 (331)
|+...+. +.++++++.|+.++ +||+++..
T Consensus 346 H~~~~~~-~~~~~l~~~gv~~~--~~P~~~~~ 374 (479)
T cd01300 346 HAQLVSP-DDIPRFAKLGVIAS--VQPNHLYS 374 (479)
T ss_pred ecccCCH-HHHHHHHHcCCceE--eCcccccC
Confidence 9876554 77889999996655 78887654
No 98
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=99.62 E-value=7.1e-14 Score=132.57 Aligned_cols=227 Identities=26% Similarity=0.283 Sum_probs=130.8
Q ss_pred EEEECcEEEeCCC-c--eeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCC--CC-CCChhhHH
Q 020079 55 ILIKGGTVVNAHH-Q--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF--MG-SETIDDFF 128 (331)
Q Consensus 55 ~~i~n~~i~~~~~-~--~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~--~~-~~~~~~~~ 128 (331)
++|+|++|+++.. . +.++|+|+||+|++|++... .+.++||++|++|+|||||+|+|+..+. .+ ...++++.
T Consensus 2 ~iIkng~I~dp~~~~~~~~~dI~IedGkIveIg~~~~--~~~eVIDa~G~vVmPGfID~HvHg~gG~~~~~R~~~pE~~~ 79 (556)
T TIGR03121 2 ILIKNGTVYDPANGIDGEVMDIFIRDGKIVEPVSGGT--KPAKVIDASGKLVMAGGVDSHTHIAGPKVNVGRLLRPEDHR 79 (556)
T ss_pred EEEEeEEEEcCCCCccccccEEEEECCEEEEecCCCC--CCCeEEECCCCEEEeCEEeeeECCCccccccccccCHHHHh
Confidence 6899999999754 2 35899999999999987533 2358999999999999999999998741 11 12334333
Q ss_pred H----------------------HHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc----------c
Q 020079 129 S----------------------GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM----------A 176 (331)
Q Consensus 129 ~----------------------~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 176 (331)
. ....+++.|+||++|..-++.. .+..-+++.. ...+|-+... .
T Consensus 80 ~~~~~~~~~~r~Gtt~~lPTt~tt~y~ya~mGyTt~~eaa~~p~~-arh~h~e~~~---~p~~d~~~~~~~gnn~~~~~~ 155 (556)
T TIGR03121 80 RDPEPRTGLTRAGSGFSVPSTYATGYRYARMGYTTVFEAAVPPLN-ARHTHEEFAD---TPILDKGGYTLLGNNWFLLEY 155 (556)
T ss_pred hcchhhhhhcCCCcceEehhHhHHHHHHHhCCccEEecCCCCccc-hhhhHHHhcc---CccccccceEEecchHHHHHH
Confidence 2 1234678899999998655432 2222222211 1112211110 0
Q ss_pred ccCCChhhHHHHHH-HHHHhCCCeEEEEEecCC------------------CCcCC-HHHHHHHHHHHHHcCCc--EEEE
Q 020079 177 ITKWDEVVSDEMEV-MVKEKGINSFKFFMAYKG------------------SFMIN-DELLIEGFKRCKSLGAL--AMVH 234 (331)
Q Consensus 177 ~~~~~~~~~~~~~~-~~~~~g~~~ik~~~~~~~------------------~~~~~-~~~l~~~~~~A~~~g~~--v~~H 234 (331)
....+.+.+++... +.+....-++|+. +|.+ .+.++ .+.++.+.+..+++|+| +|+|
T Consensus 156 ~~~~~~~~~~~~vaw~l~~tk~~giK~v-npgG~~a~~~~~~~~~~d~~~~~~~vtp~~i~~~l~~~~e~l~lph~~h~H 234 (556)
T TIGR03121 156 LKDGEPEKAAAYVAWLLKATKGYGIKVV-NPGGVEAWGWGENVLSLDDPVPYFGITPREIIKGLARANEELGLPHSIHVH 234 (556)
T ss_pred HhcCCHHHHHHHHHHHHHhccceEEEEE-CCCchhhhccCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEe
Confidence 11112222222222 2223345567765 3322 12233 56677888888999997 6667
Q ss_pred cCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCC------EEEEeCC-----------CHHHH
Q 020079 235 AENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP------LYVVHVM-----------SMDAM 297 (331)
Q Consensus 235 ~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~------~~i~H~~-----------~~~~~ 297 (331)
|.+..-.. ..+ ...+.+++++ |.+ +|+.|+- ..+..
T Consensus 235 ~nnlg~pg-----------------------n~~--~t~~t~~~~~--g~~~~~~~~~h~tH~qf~syg~~~~~~f~s~a 287 (556)
T TIGR03121 235 CNNLGVPG-----------------------NYE--TTLDTLDAAE--GVKPNRNQVLHLTHVQFHSYGGTSWRDFESGA 287 (556)
T ss_pred cCCCCCCC-----------------------chH--HHHHHHHHhc--CCCCCccceeEeeeeeeeccCCCCCCCcchhH
Confidence 76542211 111 1122233333 445 8888862 13455
Q ss_pred HHHHHHHHcCCCEEEecC
Q 020079 298 EEIAKARKAGPNFLNTTI 315 (331)
Q Consensus 298 ~~i~~~~~~Gi~v~~~~~ 315 (331)
+.+..+-++.-+|++|+-
T Consensus 288 ~~~a~~vn~~~~~t~d~G 305 (556)
T TIGR03121 288 EKIADYVNANPNVTIDVG 305 (556)
T ss_pred HHHHHHHhcCCCEEEEeC
Confidence 678888888889998754
No 99
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=99.61 E-value=9.2e-14 Score=131.22 Aligned_cols=227 Identities=24% Similarity=0.227 Sum_probs=133.6
Q ss_pred EECcEEEeCCC-c--eeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCC---CCCCChhhHH--
Q 020079 57 IKGGTVVNAHH-Q--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF---MGSETIDDFF-- 128 (331)
Q Consensus 57 i~n~~i~~~~~-~--~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~---~~~~~~~~~~-- 128 (331)
|+|++|+++.. . .+++|+|+||+|++|++.. ++.++||++|++|+|||||+|+|+.... .....||+.+
T Consensus 1 Ikng~V~d~~~~~~~~~~dI~IedGkIv~Vg~~~---~~~~vID~~G~~VmPGfID~HtH~~gg~~~~~r~~~pe~~~~~ 77 (541)
T cd01304 1 IKNGTVYDPLNGINGEKMDIFIRDGKIVESSSGA---KPAKVIDASGKVVMAGGVDMHSHIAGGKVNVGRILRPEDHRRD 77 (541)
T ss_pred CEEEEEEcCCCcccccccEEEEECCEEEEEccCC---CCCeEEECCCCEEECCeeeeeeCccccccccccccChhhhhcc
Confidence 57899998764 2 5789999999999998743 2358999999999999999999997641 1223344333
Q ss_pred ---------------------HHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc----------cc
Q 020079 129 ---------------------SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM----------AI 177 (331)
Q Consensus 129 ---------------------~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 177 (331)
.+ -.+.+-|.||+++..-++.. .+..-+++.. ...+|-+... ..
T Consensus 78 ~~~~~~~~~~~~g~~~pst~~tg-y~ya~mGytt~~e~a~~p~~-a~h~h~e~~~---~p~~d~~~~~~~gnn~~~~~~~ 152 (541)
T cd01304 78 PVPKGALRRAGVGFSVPSTLATG-YRYAEMGYTTAFEAAMPPLN-ARHTHEEMAD---TPILDKGAYPLLGNNWFVLEYL 152 (541)
T ss_pred ccccccccccCCCccCCCchHhh-hHHHhcCcceeecccCCccc-chhhhHHhcc---CccccccceEEecchHHHHHHH
Confidence 11 23456799999977544322 1222222211 1112211100 01
Q ss_pred cCCChhhHHHHHH-HHHHhCCCeEEEEEecCC------------------CCcCC-HHHHHHHHHHHHHcCCcEEEE--c
Q 020079 178 TKWDEVVSDEMEV-MVKEKGINSFKFFMAYKG------------------SFMIN-DELLIEGFKRCKSLGALAMVH--A 235 (331)
Q Consensus 178 ~~~~~~~~~~~~~-~~~~~g~~~ik~~~~~~~------------------~~~~~-~~~l~~~~~~A~~~g~~v~~H--~ 235 (331)
...+.+.+++... +.+....-++|+. +|.+ .+.++ .+.++.+.+..+++|+|..+| |
T Consensus 153 ~~~~~~~~~~~vaw~l~~tk~~giK~v-npgG~~a~~~~~~~~~~d~~~~~~~vtp~~ii~~l~~~~~~lg~ph~iH~h~ 231 (541)
T cd01304 153 RDGDMEKLAAYVAWTLKASKGYGIKVV-NPGGTEAWGWGQNVLSLDDPVPYFDITPREILKGLAEANEELGLPHSIHVHC 231 (541)
T ss_pred hcCCHHHHHHHHHHHHHhccceEEEEE-CCCchhhhccCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 1112222222222 2223345567765 3322 12233 567788889999999876555 5
Q ss_pred CCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCC-----CEEEEeCC---C--------HHHHHH
Q 020079 236 ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT-----PLYVVHVM---S--------MDAMEE 299 (331)
Q Consensus 236 e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~-----~~~i~H~~---~--------~~~~~~ 299 (331)
.+..... . .+...+.+++++.... .+|+.|+- . .+..+.
T Consensus 232 nnlg~pg-----------------------n--~~~t~~t~~~~~~~~~~~~~~~~h~tH~qfhsyg~~~~~~~~s~a~~ 286 (541)
T cd01304 232 NNLGVPG-----------------------N--YETTLETMKAAEGVKPDPRRQVLHLTHVQFHSYGGTSWRDFESGAER 286 (541)
T ss_pred ccCCCCC-----------------------c--HHHHHHHHHHhhcCCCccccceeEeeeeeEEeeccCCcccHhHHHHH
Confidence 4432211 1 1222444566665544 48888873 1 356788
Q ss_pred HHHHHHcCCCEEEecCCc
Q 020079 300 IAKARKAGPNFLNTTIPL 317 (331)
Q Consensus 300 i~~~~~~Gi~v~~~~~p~ 317 (331)
+..+.+++.+|++|+.+.
T Consensus 287 i~~~~n~~~~it~D~G~v 304 (541)
T cd01304 287 IADYVNANDHVTIDVGQV 304 (541)
T ss_pred HHHHHHcCCCEEEEeCce
Confidence 999999999999998876
No 100
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.60 E-value=8.4e-14 Score=124.70 Aligned_cols=84 Identities=29% Similarity=0.440 Sum_probs=66.1
Q ss_pred ccEEEECcEEEeCCC--ceeeeEEEeCCEEEEeeCCCCCC-CCceEEeCCCCeeecccccccccccCCCCCCCChhhHHH
Q 020079 53 SKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (331)
Q Consensus 53 ~~~~i~n~~i~~~~~--~~~~~v~i~~g~I~~ig~~~~~~-~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~ 129 (331)
.|++|+++.|+|+.+ ....+|.|+||+|++|++..... ...++||+.|++|.|||||+|+|-+..+. .+..
T Consensus 6 YD~ViR~g~ifDGtGnp~f~tdvgIrDGvIaav~kg~~dg~~~~eevDaagriVaPGFIDvHtHyD~~~~----~d~~-- 79 (579)
T COG3653 6 YDVVIRDGLIFDGTGNPPFTTDVGIRDGVIAAVAKGALDGTGCPEEVDAAGRIVAPGFIDVHTHYDAEVL----LDPG-- 79 (579)
T ss_pred eeEEEeeceEEeCCCCCccccccccccceEEEEecccccccCCCeeecccCcEecccEEEeeecccceee----ecCC--
Confidence 579999999999874 56779999999999999865432 23489999999999999999999875421 1111
Q ss_pred HHHHHHhCCceEEe
Q 020079 130 GQAAALAGGTTMHI 143 (331)
Q Consensus 130 ~~~~~l~~GvTtv~ 143 (331)
.+..+.+|||||+
T Consensus 80 -l~psv~hGVTTVv 92 (579)
T COG3653 80 -LRPSVRHGVTTVV 92 (579)
T ss_pred -ccchhhcCeeEEE
Confidence 3445789999998
No 101
>PRK05451 dihydroorotase; Provisional
Probab=99.59 E-value=5.7e-14 Score=128.90 Aligned_cols=190 Identities=18% Similarity=0.120 Sum_probs=123.1
Q ss_pred eeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhcc---ceeeccccccc
Q 020079 102 FVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN---SCMDYGFHMAI 177 (331)
Q Consensus 102 ~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~ 177 (331)
+-+|--||+|+|+... ...+++..+. +.++|+++||....+. ...+.++........ ..+++.++...
T Consensus 5 ~~~~~~~d~h~hl~~~----~~~~~~~~~~----~~~~t~~v~mPnt~P~~~~~~~l~~~~~~a~~~~~~~~d~~~~~~i 76 (345)
T PRK05451 5 LTIRRPDDWHLHLRDG----AMLKAVVPYT----ARQFGRAIVMPNLVPPVTTVAQALAYRERILAALPAGSNFEPLMTL 76 (345)
T ss_pred EEecCcceEEEecCCc----hHHHHHHHHH----HHhcCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCCcEEEEEEE
Confidence 5578889999999863 2223444443 3669999998654333 234444444443322 22455444333
Q ss_pred cCCChhhHHHHHHHHHHhCC-CeEEEEEecCC----CCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcC
Q 020079 178 TKWDEVVSDEMEVMVKEKGI-NSFKFFMAYKG----SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELG 252 (331)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~g~-~~ik~~~~~~~----~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G 252 (331)
........+++.++. +.|+ .++|+|+.... ....+++.+.++++.+++.|+++.+|+|+.......
T Consensus 77 ~~~~~~~~~El~~~~-~~Gvv~g~Kl~~~~~~~~~~~~~~dd~~l~~~~e~~~~~g~~V~vHaE~~~~~~~~-------- 147 (345)
T PRK05451 77 YLTDNTDPDELERAK-ASGVVTAAKLYPAGATTNSDAGVTDIEKIYPVLEAMQKLGMPLLVHGEVTDPDIDI-------- 147 (345)
T ss_pred EeCCCCCHHHHHHHH-HCCCEEEEEEecccCccCCccCcCCHHHHHHHHHHHHHcCCEEEEecCCCCccccc--------
Confidence 322223457777776 6784 59999875311 111267889999999999999999999874431100
Q ss_pred CCCcccccccCChHHHHHHHHHH-HHHHHhc-CCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079 253 ITGPEGHALSRPPLLEGEATTRA-IRLAEFV-NTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN 323 (331)
Q Consensus 253 ~~~~~~~~~~~~~~~e~~~i~~~-~~l~~~~-g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~ 323 (331)
...|...+.+. ..++..+ |+++|++|+++.++++.++++ |.+|+++|||||+.++.
T Consensus 148 ------------~~~e~~~~~~~l~~lA~~~pg~~lhI~Hlst~~~~e~i~~a---~~~it~Et~ph~L~l~~ 205 (345)
T PRK05451 148 ------------FDREAVFIDRVLEPLRRRFPKLKIVFEHITTKDAVDYVREA---NDNLAATITPHHLLINR 205 (345)
T ss_pred ------------ccchHHHHHHHHHHHHHhcCCCcEEEEecCcHHHHHHHHhc---CCCEEEEecHHHHhcCH
Confidence 00012334444 3477666 999999999999998888765 67999999999999773
No 102
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=99.56 E-value=1.1e-13 Score=126.44 Aligned_cols=191 Identities=14% Similarity=0.107 Sum_probs=125.9
Q ss_pred eeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhcc-c--eeeccccccc
Q 020079 102 FVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-S--CMDYGFHMAI 177 (331)
Q Consensus 102 ~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~-~--~~~~~~~~~~ 177 (331)
+.+|---|+|+|+.+. .+.....-+..-|||++++|....+. ...+.++...+.... . .+++.++++.
T Consensus 2 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~vt~vv~mPnt~P~~~~~e~~~~~~~~~~~~s~~~vDf~~~~~v 73 (341)
T TIGR00856 2 LTIRRPDDWHLHLRDG--------AMLKAVLPYTSEIFSRAIVMPNLAPPVTTVEAAVAYRERILDAVPAGHDFTPLMTL 73 (341)
T ss_pred ceecCccceeeeccCc--------hHHHHHHHHHHhhcCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcceEEEEEE
Confidence 4567778999999875 22222333556679999999765443 234455444444332 3 2467666665
Q ss_pred cCCChhhHHHHHHHHHHhCCCeEEEEEecCC----CCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCC
Q 020079 178 TKWDEVVSDEMEVMVKEKGINSFKFFMAYKG----SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGI 253 (331)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~----~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~ 253 (331)
....+...+++.++.+..|+.++|+|+...+ ....++..+.++++.+++.|+++.+|+|+.......
T Consensus 74 ~~~~~~~~~Ei~~l~~~~Gv~g~Klf~~~~~~~~~~~v~dd~~l~~~~e~~~e~g~~v~vHaEd~~~~i~~--------- 144 (341)
T TIGR00856 74 YLTDSLTPEELERAKNEGVVRAVKLYPAGATTNSSHGVTDIDAIMPVLEAMEKIGLPLLLHGEVTHGDIDI--------- 144 (341)
T ss_pred ECCCCCCHHHHHHHHHcCCeEEEEEccCCcccCCCcCCCCHHHHHHHHHHHHHcCCeEEEeecCCCCCccc---------
Confidence 4333335677877773449999999864221 112245789999999999999999999885311000
Q ss_pred CCcccccccCChHHHHHHHHHH-HHHHH-hcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079 254 TGPEGHALSRPPLLEGEATTRA-IRLAE-FVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN 323 (331)
Q Consensus 254 ~~~~~~~~~~~~~~e~~~i~~~-~~l~~-~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~ 323 (331)
...|..++.+. ..++. ..+.+++++|+++..+++.++++|. +|+++|||||+.++.
T Consensus 145 -----------~~~e~~a~~~~i~~lA~~~~~~~~~i~H~st~~~~~~i~~a~~---~vt~E~~ph~L~l~~ 202 (341)
T TIGR00856 145 -----------FDREARFIESVLEPLRQRFPALKVVLEHITTKDAIDYVEDGNN---RLAATITPQHLMFTR 202 (341)
T ss_pred -----------ccchhhhhHHHHHHHHHHccCCeEEEEecCcHHHHHHHHHcCC---CEEEEEcHHHHhccH
Confidence 00122334433 34454 4489999999999999999988864 499999999998765
No 103
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=99.54 E-value=5e-13 Score=126.23 Aligned_cols=199 Identities=20% Similarity=0.240 Sum_probs=122.7
Q ss_pred eCCCCeeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCC-CCCcHHHHHHHHHHHhccceeeccccc
Q 020079 97 DATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEAYEKKAKNSCMDYGFHM 175 (331)
Q Consensus 97 d~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (331)
|++|++|+|||||+|+|+..+ + .+++.+ .+.++.+||||++++... .+....+.++...+...+.++++.+..
T Consensus 1 Da~G~~v~PG~ID~H~Hi~~~--~-~~~~~~---~~~a~~~GvTtvv~~p~~~~~v~g~~~~~~~~~~a~~~p~~~~~~~ 74 (422)
T cd01295 1 DAEGKYIVPGFIDAHLHIESS--M-LTPSEF---AKAVLPHGTTTVIADPHEIANVAGVDGIEFMLEDAKKTPLDIFWML 74 (422)
T ss_pred CCCCCEEccCEEEccCCcCCC--C-CChHHH---HHHHHCCCcEEEEeCCCCCCcCCCHHHHHHHHHHHhCCCceEEEeC
Confidence 789999999999999999886 2 234333 678899999999986432 222445566665555544555554333
Q ss_pred cc----cCC--Chh--hHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHH
Q 020079 176 AI----TKW--DEV--VSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKR 247 (331)
Q Consensus 176 ~~----~~~--~~~--~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~ 247 (331)
+. +.. ... ..++++++.+..++.+++.++++... ..+++.+.+.++.|+++|+++.+|+..... .....
T Consensus 75 p~~vp~t~~e~~g~~~~~~~i~~l~~~~~vvglgE~md~~~v-~~~~~~l~~~i~~A~~~g~~v~~Ha~g~~~--~~L~a 151 (422)
T cd01295 75 PSCVPATPFETSGAELTAEDIKELLEHPEVVGLGEVMDFPGV-IEGDDEMLAKIQAAKKAGKPVDGHAPGLSG--EELNA 151 (422)
T ss_pred CCcCCCCCCCCCCCcCCHHHHHHHhcCCCCcEEEEeccCccc-cCCcHHHHHHHHHHHhCCCEEEEeCCCCCH--HHHHH
Confidence 32 111 111 36778877744588999988776532 336678999999999999999999855432 22233
Q ss_pred HHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHH-HHH-cCCCEEEecC
Q 020079 248 MIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAK-ARK-AGPNFLNTTI 315 (331)
Q Consensus 248 ~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~-~~~-~Gi~v~~~~~ 315 (331)
+.+.|.... |.. .. .++..+.. +.|..+.+.+.+....++.+.+ ..+ .+.++..+|.
T Consensus 152 ~l~aGi~~d--H~~---~~-----~eea~e~l-~~G~~i~i~~g~~~~~~~~~~~~l~~~~~~~i~l~TD 210 (422)
T cd01295 152 YMAAGISTD--HEA---MT-----GEEALEKL-RLGMYVMLREGSIAKNLEALLPAITEKNFRRFMFCTD 210 (422)
T ss_pred HHHcCCCCC--cCC---Cc-----HHHHHHHH-HCCCEEEEECcccHhhHHHHHHhhhhccCCeEEEEcC
Confidence 444565331 211 11 12222333 4688888887665444443333 222 4677777665
No 104
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.51 E-value=7.7e-13 Score=114.84 Aligned_cols=178 Identities=18% Similarity=0.215 Sum_probs=113.5
Q ss_pred EEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCC----CCCCCh--hhHHH
Q 020079 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF----MGSETI--DDFFS 129 (331)
Q Consensus 56 ~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~----~~~~~~--~~~~~ 129 (331)
+|.|++|+..+..-+++|+|+||+|..|.+.... ...-+|++|.+++|||||+|+.--..+ .|-.++ ..+..
T Consensus 2 ~lsnarivl~D~v~~gsv~i~DG~Ia~i~~g~s~--~~~~~d~eGd~LLPGlIeLHtD~lE~~~~PRPgV~wp~~aAi~a 79 (377)
T COG3454 2 ILSNARIVLEDRVVNGSVLIRDGLIADIDEGISP--LAAGIDGEGDYLLPGLIELHTDNLERFMTPRPGVRWPPIAAILA 79 (377)
T ss_pred ccccceEEeecceeeeeEEEecceEeeeccccCc--ccccccCCCCeecccchhhcchhhhcccCCCCCCCCCchHHHHH
Confidence 6889999999988889999999999999986542 246799999999999999999643321 122222 22333
Q ss_pred HHHHHHhCCceEEecCcCCCCC--------cHHHHHHHHHHH--hccceeeccccccccCCChhhHHHHHHHHHHhCCCe
Q 020079 130 GQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKK--AKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINS 199 (331)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~--------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 199 (331)
-.+..+.+|||||.|.-..++. +..+.++...+. ..+...+-.+|..+.....+.+..++++.....+..
T Consensus 80 hD~~l~~sGITTv~dal~iGd~~~gg~r~~~~~~midaI~~~~~~g~lradHr~HlRcEvs~~~~l~~~e~~~~~p~v~L 159 (377)
T COG3454 80 HDAQLAASGITTVLDALAIGDVRDGGLRLENLRKMIDAIEEAQAAGRLRADHRLHLRCEVSHPATLPLFEDLMDHPRVKL 159 (377)
T ss_pred hhHHHHhcChhhHHhhhhcCcccCCccchHHHHHHHHHHHHHHhccchhhccceeeeeecCChhHHHHHHHHhcCCCeeE
Confidence 4456788999999976432221 334444444442 223445556666665555566667777764344444
Q ss_pred EEEEEecCCC----------------CcCCHHH-------------------HHHHHHHHHHcCCcEEEEc
Q 020079 200 FKFFMAYKGS----------------FMINDEL-------------------LIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 200 ik~~~~~~~~----------------~~~~~~~-------------------l~~~~~~A~~~g~~v~~H~ 235 (331)
+..+-...+. ..+++++ ...+.+.|+++|+.+..|-
T Consensus 160 iSlMDH~PGQrQf~~le~Y~~yy~~k~~~s~~e~~~~i~~r~a~~~~y~~~~r~~i~~~c~~rgI~lASHD 230 (377)
T COG3454 160 ISLMDHTPGQRQFANLEKYREYYQGKRGLSDEEFAEFIEERQALSARYSDPNRQAIAALCRERGIALASHD 230 (377)
T ss_pred EEecCCCCCcchhhhHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHcCCceecCC
Confidence 4332111111 1233333 3567788999999999994
No 105
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=5.7e-13 Score=119.97 Aligned_cols=88 Identities=27% Similarity=0.395 Sum_probs=72.7
Q ss_pred EEEECcEEEeCCCce-eeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCC--CCCChhhHHHHH
Q 020079 55 ILIKGGTVVNAHHQQ-IADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM--GSETIDDFFSGQ 131 (331)
Q Consensus 55 ~~i~n~~i~~~~~~~-~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~--~~~~~~~~~~~~ 131 (331)
.+|+|++|+++.... ++.+.|+||+|.+|.+ .+.+.+.++||.+|.+|+|||||.|+|.+.... ...+.+.+....
T Consensus 2 ~~~~~~~i~t~~~~~~~~~v~i~dg~I~~i~~-~~~p~~~e~id~~G~~l~PGfID~hihG~gG~~~~D~~~~~~l~~i~ 80 (380)
T COG1820 2 YALKNGRIFTGHGVLDGGAVVIEDGKIEAVVP-AELPADAEIIDLKGALLVPGFIDLHIHGGGGADFMDAGSVETLETMA 80 (380)
T ss_pred ceeeccEEEcCcceEECcEEEEcCCEEEEEec-CcCCCcceeecCCCCEecccEEEEeecCcCcccccCccCHHHHHHHH
Confidence 578999999999865 5699999999999998 335557899999999999999999999877522 113456677778
Q ss_pred HHHHhCCceEEe
Q 020079 132 AAALAGGTTMHI 143 (331)
Q Consensus 132 ~~~l~~GvTtv~ 143 (331)
+..++.|||++.
T Consensus 81 ~~~~~~GtTsfL 92 (380)
T COG1820 81 EAHLRHGTTSFL 92 (380)
T ss_pred HHhhhcCeeeee
Confidence 888999999998
No 106
>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]
Probab=99.49 E-value=1.3e-12 Score=116.24 Aligned_cols=170 Identities=18% Similarity=0.231 Sum_probs=127.9
Q ss_pred ccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCCCC----------CCCceEEeCCCCeeecccccccccccCCCCCCC
Q 020079 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV----------GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSE 122 (331)
Q Consensus 53 ~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~~~----------~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~ 122 (331)
.|++|+|+.|+|..++.+.+|.|+||||..||+...+ .+.+++|-++|++|..|=||+|+|+..+
T Consensus 67 ~D~VITNa~IiD~~Gi~KADiGikdGrI~~IGKaGNPd~~dgV~iiiG~sTe~iagEg~I~TAGGiDtHiHfI~P----- 141 (568)
T COG0804 67 LDLVITNALIIDYWGIVKADIGIKDGRIAGIGKAGNPDIMDGVTIIIGPSTEIIAGEGKIVTAGGIDTHIHFICP----- 141 (568)
T ss_pred ccEEEeeeEEEeccceEEeecccccceEEEeecCCCCCccCCceEEeccccceecCCceEEeeccccceeEEecH-----
Confidence 5899999999999899999999999999999985432 1346789999999999999999998765
Q ss_pred ChhhHHHHHHHHHhCCceEEecCcCCCC-C-------cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHH
Q 020079 123 TIDDFFSGQAAALAGGTTMHIDFVIPIN-G-------SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKE 194 (331)
Q Consensus 123 ~~~~~~~~~~~~l~~GvTtv~d~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (331)
+. ...++.+||||+.--+..+. + ...-.+..+.+.....++++++.+.- +......+.+.+ +
T Consensus 142 --qq----i~~Al~sGiTtmiGGGtGpa~Gt~aTT~TpG~w~i~rMl~a~d~~p~N~g~lgKG---n~s~~~~L~Eqi-~ 211 (568)
T COG0804 142 --QQ----IEEALASGITTMIGGGTGPADGTNATTCTPGPWHIARMLQAADGLPMNIGFLGKG---NASNPAPLAEQI-E 211 (568)
T ss_pred --HH----HHHHHhcCcEEEecCccCCCCCcccccccCCHHHHHHHHHhhhcCceeeEEeecC---CCCCchhHHHHH-h
Confidence 22 56789999999985432221 1 22334555556666677777765422 223334566677 7
Q ss_pred hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhh
Q 020079 195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAV 241 (331)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~ 241 (331)
.|+.++|+.-+|. .++..+..+++.|.++++.+.+|.....|.
T Consensus 212 aGa~GlKlHEDWG----~TpaaI~~~L~VAD~~DvqVaiHtDTLNEs 254 (568)
T COG0804 212 AGAIGLKLHEDWG----ATPAAIDTCLSVADEYDVQVAIHTDTLNES 254 (568)
T ss_pred hccceeEeecccC----CCHHHHHHHHhhhhhhceEEEEeecccccc
Confidence 8999999876654 578999999999999999999997554443
No 107
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=99.46 E-value=2.4e-13 Score=120.45 Aligned_cols=186 Identities=16% Similarity=0.106 Sum_probs=102.5
Q ss_pred eeecccccccccccCCCC-C-----------------------CCChhhHHHH----HHHHHhCCceEEecCcCCCCCcH
Q 020079 102 FVMPGGIDPHTHLAMEFM-G-----------------------SETIDDFFSG----QAAALAGGTTMHIDFVIPINGSL 153 (331)
Q Consensus 102 ~v~PG~ID~H~H~~~~~~-~-----------------------~~~~~~~~~~----~~~~l~~GvTtv~d~~~~~~~~~ 153 (331)
+|||||||+|+|+.+... | ..++++++.. ...++++||||+.|+........
T Consensus 1 ~v~PG~vn~H~H~~~~~~rg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~ 80 (263)
T cd01305 1 ILIPALVNAHTHLGDSAIKEVGDGLPLDDLVAPPDGLKHRLLAQADDRELAEAMRKVLRDMRETGIGAFADFREGGVEGI 80 (263)
T ss_pred CccccceeccccHHHHHhhcCCCCCcHHHHhcCcccchHHHHHhCCHHHHHHHHHHHHHHHHhcCCeEEEEccCcchhHH
Confidence 589999999999976521 0 1223333332 34568899999999853222122
Q ss_pred HHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEE
Q 020079 154 TAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV 233 (331)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~ 233 (331)
....+...+.+.+. ..+.. .... .+..+ ++. ...+. ++++.+..++ ++++++.|+++|+++++
T Consensus 81 ~a~~~a~~~~g~r~---~~~~~-~~~~-~~~~~---~~~--~~~~~----~~~~~~~~~~---l~~~~~~A~~~g~~v~~ 143 (263)
T cd01305 81 ELLRRALGKLPVPF---EVILG-RPTE-PDDPE---ILL--EVADG----LGLSSANDVD---LEDILELLRRRGKLFAI 143 (263)
T ss_pred HHHHHHHHhcCCCc---eEEec-cCCc-chHHH---HHH--hhccc----ccCCCCCccC---HHHHHHHHHHCCCeeEE
Confidence 33334444444442 11110 0111 11112 222 12222 3444444444 99999999999999999
Q ss_pred Ec-CCchhh-HHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-----HHHHHHHHHHHc
Q 020079 234 HA-ENGDAV-FEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-----DAMEEIAKARKA 306 (331)
Q Consensus 234 H~-e~~~~~-~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-----~~~~~i~~~~~~ 306 (331)
|+ |...+. ....+++.+.|... -.|+.... ++.++++++.|+. ++||+.. .+...+++++++
T Consensus 144 H~~e~~~~~g~~~i~~~~~~~~~~-i~H~~~l~--------~~~~~~la~~g~~--v~~~P~sn~~l~~g~~p~~~l~~~ 212 (263)
T cd01305 144 HASETRESVGMTDIERALDLEPDL-LVHGTHLT--------DEDLELVRENGVP--VVLCPRSNLYFGVGIPPVAELLKL 212 (263)
T ss_pred ecCCCCCCCCchhHHHHHhCCCCE-EEEcCCCC--------HHHHHHHHHcCCc--EEEChhhHHHhCCCCCCHHHHHHC
Confidence 97 443311 11123444444322 13332211 2356788888887 5555431 234578999999
Q ss_pred CCCEEEecC
Q 020079 307 GPNFLNTTI 315 (331)
Q Consensus 307 Gi~v~~~~~ 315 (331)
|++|+.++.
T Consensus 213 Gv~v~lGtD 221 (263)
T cd01305 213 GIKVLLGTD 221 (263)
T ss_pred CCcEEEECC
Confidence 999998876
No 108
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.35 E-value=2.1e-11 Score=112.86 Aligned_cols=227 Identities=22% Similarity=0.140 Sum_probs=114.5
Q ss_pred CCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCCCCCC-------------CChh--------hHHHHHHHHH
Q 020079 77 DGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS-------------ETID--------DFFSGQAAAL 135 (331)
Q Consensus 77 ~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~-------------~~~~--------~~~~~~~~~l 135 (331)
||||++|++....+.+.++||++|++|+|||||+|+|++....+. .+++ ........++
T Consensus 1 ~gkI~~i~~~~~~~~~~~vid~~g~~v~Pg~id~h~h~~~~~~~~~~~~~d~~e~~~~~~p~~~~~d~~~~~~~~~~~a~ 80 (359)
T cd01309 1 DGKIVAVGAEITTPADAEVIDAKGKHVTPGLIDAHSHLGLDEEGGVRETSDANEETDPVTPHVRAIDGINPDDEAFKRAR 80 (359)
T ss_pred CCEEEEEcCCCCCCCCCeEEeCCCCEEcCcEEecccccCccccCCCcCcCCccccCCCCCceeEeecccCCCCHhHHHHH
Confidence 799999999766555779999999999999999999998752211 0000 0113456788
Q ss_pred hCCceEEecCcCCCCC-cHHH--------HHHHHHHHhccceeecccc--ccccC-----CCh---hhHHHHHHHHH---
Q 020079 136 AGGTTMHIDFVIPING-SLTA--------GFEAYEKKAKNSCMDYGFH--MAITK-----WDE---VVSDEMEVMVK--- 193 (331)
Q Consensus 136 ~~GvTtv~d~~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~---~~~~~~~~~~~--- 193 (331)
++|||++.-....... .... ..+... ......+.+.+. ..... .+. .....+++...
T Consensus 81 ~~GvT~~~v~p~~~~~~gg~~~~i~~~~~~~~~~~-~~~~~~~~~a~g~~~~~~~~~~~~~p~trmg~~~~lr~~~~~a~ 159 (359)
T cd01309 81 AGGVTTVQVLPGSANLIGGQGVVIKTDGGTIEDMF-IKAPAGLKMALGENPKRVYGGKGKEPATRMGVAALLRDAFIKAQ 159 (359)
T ss_pred hcCceEEEecCCCCCcccceEEEEECCCCCHHHhc-ccCCceeEEecCCCCcccccccCCCccchHHHHHHHHHHHHHHH
Confidence 9999999644322111 0000 001100 011111111111 00000 000 01111221110
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHH
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~ 273 (331)
+......+ +..........+..++.+.+.++.. +++.+|+.....+....+...+.|+.-.-.|+. .. .
T Consensus 160 ~y~~~~~~-~~~~~~~~~~~d~~l~~l~~~~~~~-~~v~vHa~~~~~i~~~l~~~~e~g~~~~i~H~~--------~~-~ 228 (359)
T cd01309 160 EYGRKYDL-GKNAKKDPPERDLKLEALLPVLKGE-IPVRIHAHRADDILTAIRIAKEFGIKITIEHGA--------EG-Y 228 (359)
T ss_pred HHHHHhhh-hhhcccCCCCCCccHHHHHHHHcCC-eeEEEEeCCHHHHHHHHHHHHHcCCCEEEECch--------hH-H
Confidence 10000000 0000000011234566666665543 899999987777776666666777641112221 11 3
Q ss_pred HHHHHHHhcCCCEEEEeCCCH--------HHHHHHHHHHHcC-CCEEEecC
Q 020079 274 RAIRLAEFVNTPLYVVHVMSM--------DAMEEIAKARKAG-PNFLNTTI 315 (331)
Q Consensus 274 ~~~~l~~~~g~~~~i~H~~~~--------~~~~~i~~~~~~G-i~v~~~~~ 315 (331)
+.++.+++.|+.+.++..... .....++.+.++| +++...+.
T Consensus 229 ~~~~~la~~gv~v~~~P~~~~~~~~~~~~~~~~~~~~l~~aGGv~valgsD 279 (359)
T cd01309 229 KLADELAKHGIPVIYGPTLTLPKKVEEVNDAIDTNAYLLKKGGVAFAISSD 279 (359)
T ss_pred HHHHHHHHcCCCEEECccccccccHHHhhcchhhHHHHHHcCCceEEEECC
Confidence 455666777877655543221 2345567777887 98887653
No 109
>PRK06886 hypothetical protein; Validated
Probab=99.30 E-value=1.7e-10 Score=104.55 Aligned_cols=202 Identities=15% Similarity=0.106 Sum_probs=117.7
Q ss_pred ccccccccccCCCCCC-------------------------CChhhHH----HHHHHHHhCCceEEecCcCCCCC---cH
Q 020079 106 GGIDPHTHLAMEFMGS-------------------------ETIDDFF----SGQAAALAGGTTMHIDFVIPING---SL 153 (331)
Q Consensus 106 G~ID~H~H~~~~~~~~-------------------------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~---~~ 153 (331)
||||.|+|++..+... .+.++++ ...+.++++|+|.++.+....+. ..
T Consensus 21 gfv~~H~HlDk~~~~~~~~~~~~~~g~l~e~i~~~~~~k~~~t~~dv~~Ra~~~l~~~~~~Gtt~iRtHvdvd~~~~l~~ 100 (329)
T PRK06886 21 GWVNAHAHADRAFTMTPEKIAIYHYANLQQKWDLVDEVKRNSTVEDYYARFSQAIELMISQGVTAFGTFVDIDPICEDRA 100 (329)
T ss_pred CCccccccccccccCCCccccccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcCcccEeeeeccCCCccccH
Confidence 8999999998853110 1222332 23455788999999966544321 34
Q ss_pred HHHHHHHHHHhcc-ce---eeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCC---CCcCCHHHHHHHHHHHHH
Q 020079 154 TAGFEAYEKKAKN-SC---MDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKG---SFMINDELLIEGFKRCKS 226 (331)
Q Consensus 154 ~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~---~~~~~~~~l~~~~~~A~~ 226 (331)
.+.+...++.... .. +.++..+ ... ....+.+.+.. +. ++.+... |.. ....+++.++.+++.|++
T Consensus 101 ~~a~~~~r~~~~~~idlq~vafPq~g-~~~--~~~~~l~~~al-~~-advvGGi--P~~~~~~~~~~~e~l~~~~~lA~~ 173 (329)
T PRK06886 101 IIAAHKAREVYKHDIILKFANQTLKG-VIE--PTAKKWFDIGS-EM-VDMIGGL--PYRDELDYGRGLEAMDILLDTAKS 173 (329)
T ss_pred HHHHHHHHHHhcCcceEEEEecChhh-ccC--ccHHHHHHHHH-Hh-CCEEeCc--cCCcCCCCCCCHHHHHHHHHHHHH
Confidence 4455555444432 22 2232222 221 22234444444 22 4444322 222 234568999999999999
Q ss_pred cCCcEEEEc-CCchhhHHHH----HHHHHcCCCCcc--cccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC------
Q 020079 227 LGALAMVHA-ENGDAVFEGQ----KRMIELGITGPE--GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS------ 293 (331)
Q Consensus 227 ~g~~v~~H~-e~~~~~~~~~----~~~~~~G~~~~~--~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~------ 293 (331)
+|+++++|+ |..+...... +...+.|+.++- .|+...... +.....+.+++.++.|+.+..++.++
T Consensus 174 ~g~~Id~Hlde~~~~~~~~le~l~~~~~~~Gl~grV~~sH~~~L~~~-~~~~~~~~i~~La~agi~Vv~~P~snl~l~~~ 252 (329)
T PRK06886 174 LGKMVHVHVDQFNTPKEKETEQLCDKTIEHGMQGRVVAIHGISIGAH-SKEYRYRLYQKMREADMMVIACPMAWIDSNRK 252 (329)
T ss_pred cCCCeEEeECCCCchhHHHHHHHHHHHHHcCCCCCEEEEEeccccCc-ChhhHHHHHHHHHHcCCeEEECchhhhhhccc
Confidence 999999997 5443322333 334488887753 233322222 22446677888998888754444321
Q ss_pred ------HHHHHHHHHHHHcCCCEEEecC
Q 020079 294 ------MDAMEEIAKARKAGPNFLNTTI 315 (331)
Q Consensus 294 ------~~~~~~i~~~~~~Gi~v~~~~~ 315 (331)
..++..+++++++|++|+.++.
T Consensus 253 ~~~~p~~rGv~pv~eL~~aGV~V~lGtD 280 (329)
T PRK06886 253 EDLMPFHNALTPADEMIPEGITVALGTD 280 (329)
T ss_pred cccCcCCCCCCCHHHHHHCCCeEEEecC
Confidence 3457789999999999998764
No 110
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=99.19 E-value=3.7e-10 Score=99.72 Aligned_cols=130 Identities=22% Similarity=0.227 Sum_probs=71.2
Q ss_pred cccccccccCCCCCC------------CC----hhhHHHHHHHHHhCCceEEecCcCCCCC-----cHHHHHHHHHHH-h
Q 020079 107 GIDPHTHLAMEFMGS------------ET----IDDFFSGQAAALAGGTTMHIDFVIPING-----SLTAGFEAYEKK-A 164 (331)
Q Consensus 107 ~ID~H~H~~~~~~~~------------~~----~~~~~~~~~~~l~~GvTtv~d~~~~~~~-----~~~~~~~~~~~~-~ 164 (331)
|||+|+|+.++.... .+ .+......+.++++||||+.++...... ......+...+. +
T Consensus 1 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (275)
T cd01292 1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAG 80 (275)
T ss_pred CcccchhhHHHHHccCCCccccccccccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecCccccchHHHHHHHHHHHhcC
Confidence 799999988752111 11 2234455677899999999998755432 122222222222 1
Q ss_pred ccceeeccccccccCC----ChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCc
Q 020079 165 KNSCMDYGFHMAITKW----DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG 238 (331)
Q Consensus 165 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~ 238 (331)
.+..+....+...... .+...+.+.+.. +.|+.+++....... ...+.+.++++++.|+++|+++.+|+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~gi~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~i~~H~~~~ 156 (275)
T cd01292 81 IRVVLGLGIPGVPAAVDEDAEALLLELLRRGL-ELGAVGLKLAGPYTA-TGLSDESLRRVLEEARKLGLPVVIHAGEL 156 (275)
T ss_pred eeeEEeccCCCCccccchhHHHHHHHHHHHHH-hcCCeeEeeCCCCCC-CCCCcHHHHHHHHHHHHcCCeEEEeeCCc
Confidence 1211111111111000 112233333333 246777776543321 12478999999999999999999998543
No 111
>COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion]
Probab=99.06 E-value=4.5e-09 Score=94.15 Aligned_cols=64 Identities=41% Similarity=0.661 Sum_probs=52.1
Q ss_pred CccEEEECcEEEeCCC---ceeeeEEEeCCEEEEeeCCCCCCCCceEEeCCCCeeecccccccccccCC
Q 020079 52 SSKILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME 117 (331)
Q Consensus 52 ~~~~~i~n~~i~~~~~---~~~~~v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~ 117 (331)
+..++|+|+.++|+-. -+..+|.|+||||+.-.+-. ...+++||+.|+++|||=||.|+|+..+
T Consensus 2 ~~e~~IKNg~V~dPlngingE~MDI~vkdGKIVe~sev~--~~~aKVIDA~gklvm~GGvD~HsHvAG~ 68 (575)
T COG1229 2 AMEILIKNGIVYDPLNGINGEKMDICVKDGKIVEESEVS--ESKAKVIDASGKLVMPGGVDSHSHVAGA 68 (575)
T ss_pred CceEEeecCEEecCccCCCCceeeEEeecCeEeeecccc--cccceEEeccCcEEecCccccccccccc
Confidence 4569999999999763 36789999999998743211 1247999999999999999999999874
No 112
>PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily []. The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetateThis family includes dihydroorotase and urease which belong to MEROPS peptidase family M38 (beta-aspartyl dipeptidase, clan MJ), where they are classified as non-peptidase homologs. ; GO: 0016787 hydrolase activity; PDB: 1O12_A 2KAU_C 1FWD_C 1A5M_C 1FWC_C 1FWI_C 1EJV_C 1FWH_C 1A5L_C 1KRA_C ....
Probab=98.76 E-value=3.6e-08 Score=90.07 Aligned_cols=135 Identities=22% Similarity=0.250 Sum_probs=73.8
Q ss_pred eeecccccccccccCCCCCCC-------ChhhHHHHHHHHHhCCceEEecCcCCCCCcH---HHHHHHHHHHhccc----
Q 020079 102 FVMPGGIDPHTHLAMEFMGSE-------TIDDFFSGQAAALAGGTTMHIDFVIPINGSL---TAGFEAYEKKAKNS---- 167 (331)
Q Consensus 102 ~v~PG~ID~H~H~~~~~~~~~-------~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~---~~~~~~~~~~~~~~---- 167 (331)
+|+|||||+|+|+.++ ... ..+.+....+.++++||||++|+........ ..............
T Consensus 1 ~v~PGlID~H~H~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (333)
T PF01979_consen 1 YVMPGLIDAHVHGGQG--GLRGLLDPEDHYESIRTGAKAALKGGVTTVLDTPHTSPNPDIELRNEIMEGLAAAPKIEPAM 78 (333)
T ss_dssp EEEE-EEEEEEEGGGT--THTTSSSHHHHHHHHHHHHHHHHHTTEEEEEEEEESSHCHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred CEEcChhHHhhCcCCc--CccccCCHHHHHHHHHHHHHHHHhcCeEEEEcCcccCCccccccccccccccccchhhhccc
Confidence 6899999999999987 323 2344566778889999999999843332211 11111111111110
Q ss_pred -ee---eccccccccCCChh---------hHHHHHHHHHHhCCC-----eEEEEEecCCCCcCCHHHHHHHHHHHHH---
Q 020079 168 -CM---DYGFHMAITKWDEV---------VSDEMEVMVKEKGIN-----SFKFFMAYKGSFMINDELLIEGFKRCKS--- 226 (331)
Q Consensus 168 -~~---~~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~-----~ik~~~~~~~~~~~~~~~l~~~~~~A~~--- 226 (331)
.+ ....+........+ ...++.+.....+.. .+.....+.....++.+.++..++.+++
T Consensus 79 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 158 (333)
T PF01979_consen 79 TLLGTGSVGGHGEGPNEPPDKNGPHDEAFEGEDFIKFIEEAGSEIKRIDGVIPAISPHNPYTVSDEELREAVELAKEFLA 158 (333)
T ss_dssp EEEEECECSEEEECHHHHHHHHSEHHHHHHHHHHHHHHHHHTTTCEEEECEEEEEEHHTTTTSCHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccCCchhhhHHHHHHHhhhhhhhhcccccccccccccccccchhhhhhhHHhhhhhHHH
Confidence 11 01110000000000 011222333233222 3344556667778899999999999998
Q ss_pred --c-CCcEEEEcCCc
Q 020079 227 --L-GALAMVHAENG 238 (331)
Q Consensus 227 --~-g~~v~~H~e~~ 238 (331)
. ++++++|+.+.
T Consensus 159 ~~~~~~~~~~h~~~~ 173 (333)
T PF01979_consen 159 AEKLGIPVHIHVAEG 173 (333)
T ss_dssp HHHHTHEEEEEESSS
T ss_pred HHhhcccceeeeccC
Confidence 4 99999997443
No 113
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=98.69 E-value=6.5e-07 Score=81.14 Aligned_cols=196 Identities=17% Similarity=0.089 Sum_probs=111.1
Q ss_pred ecccccccccccCCC----CCCCC--hhhHHHHHHHHHhCCceEEecCcCCCCC--------cHHHHHHHHHHHh--ccc
Q 020079 104 MPGGIDPHTHLAMEF----MGSET--IDDFFSGQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKKA--KNS 167 (331)
Q Consensus 104 ~PG~ID~H~H~~~~~----~~~~~--~~~~~~~~~~~l~~GvTtv~d~~~~~~~--------~~~~~~~~~~~~~--~~~ 167 (331)
+|||||+|+--.... .+-.. ...+....+.++++||||++|.-..+.. .....++...... ...
T Consensus 1 lPG~vdlH~D~~E~~~~PRp~v~~~~~~a~~~~d~~~~a~GiTT~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (325)
T cd01306 1 LPGLIDLHTDNLEKHVMPRPGVDWPMDIALAAHDRQLAAAGITTVFDALSFGDEEGGRRRLRNLRKLIDAIRELHARGVL 80 (325)
T ss_pred CCCeEEecCcchhcccCCCCCCCCCHHHHHHHHHHHHHhcCcccceeeeEeccccCCcccHHHHHHHHHHHHHhhhCCcc
Confidence 699999999754421 11111 2233444567889999999976433311 1222233332222 234
Q ss_pred eeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCC-----------------------------------CCcC
Q 020079 168 CMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKG-----------------------------------SFMI 212 (331)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~-----------------------------------~~~~ 212 (331)
..+..++..+.....+..+.+..+.+...+..+.+.-...+ ....
T Consensus 81 ~~d~~~hlR~E~~~~~~~~~~~~~~~~~~v~lvs~~dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (325)
T cd01306 81 RADHRLHLRCELADPAVLPELESLMADPRVHLVSLMDHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARAAAY 160 (325)
T ss_pred hhhcceEEEEeecCccHHHHHHHHhcCCCcCEEEEeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Confidence 45555666665555666677777764444554433211100 0113
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEcC-CchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeC
Q 020079 213 NDELLIEGFKRCKSLGALAMVHAE-NGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (331)
Q Consensus 213 ~~~~l~~~~~~A~~~g~~v~~H~e-~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~ 291 (331)
+.+.++++++.|+++|+++.+|+. ..+.+ +...+.|....+. | ...+.++.+.+.|..+....-
T Consensus 161 ~~~~~~~iv~~A~~~gl~vasH~d~~~~~v----~~a~~~Gv~~~E~-----p------~t~e~a~~a~~~G~~vv~gap 225 (325)
T cd01306 161 APANRSELAALARARGIPLASHDDDTPEHV----AEAHELGVVISEF-----P------TTLEAAKAARELGLQTLMGAP 225 (325)
T ss_pred CHHHHHHHHHHHHHCCCcEEEecCCChHHH----HHHHHCCCeeccC-----C------CCHHHHHHHHHCCCEEEecCc
Confidence 467889999999999999999984 33333 3445567765432 2 123345677777877654321
Q ss_pred -----CCHHHHHHHHHHHHcCCCEEEec
Q 020079 292 -----MSMDAMEEIAKARKAGPNFLNTT 314 (331)
Q Consensus 292 -----~~~~~~~~i~~~~~~Gi~v~~~~ 314 (331)
.+......++++.+.|+.+..++
T Consensus 226 n~lrg~s~~g~~~~~~ll~~Gv~~al~S 253 (325)
T cd01306 226 NVVRGGSHSGNVSARELAAHGLLDILSS 253 (325)
T ss_pred ccccCccccccHhHHHHHHCCCeEEEEc
Confidence 11122345778888998776544
No 114
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=98.68 E-value=3.5e-07 Score=81.57 Aligned_cols=127 Identities=27% Similarity=0.297 Sum_probs=65.0
Q ss_pred eCCCCeeeccccccccc--ccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeecccc
Q 020079 97 DATGKFVMPGGIDPHTH--LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFH 174 (331)
Q Consensus 97 d~~g~~v~PG~ID~H~H--~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (331)
|++|++|+|||||+|+| ......+....+......+..+.+|+|++++..... .......... . ....
T Consensus 1 D~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~tt~~~~~~~~---~~~~~~~~~~-~----~~~~-- 70 (304)
T PF13147_consen 1 DASGKYVLPGLIDLHVHGPLGRSEDGAPWAEQAAAASAAALAGGVTTVVDMPGTN---PEELNRARRR-G----AGYP-- 70 (304)
T ss_dssp E-TTSEEEE-EEEEEEECCSSCETTTEEHSSHHHHHHHHHHHTTEEEEEESSSSS---HHHHHHHHHH-E----SEEE--
T ss_pred CCCCCEEccceeeeeeCCCcCCCCCCccchhhHHHHHHHHHhCCEeEEecCCCCC---chhhHHHHhh-c----cccc--
Confidence 89999999999999999 333322223334455667788999999999843222 2222222221 1 0000
Q ss_pred ccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcC-CcEEEEcC
Q 020079 175 MAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG-ALAMVHAE 236 (331)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g-~~v~~H~e 236 (331)
................+.+.......+....+. ....+.+.+..+.+++.+ +++..|+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (304)
T PF13147_consen 71 GSGAGPRGTTIEELEALVDLIAAEGVGFVAAYN---GIEGPGLQAAIRAAHRAGVIKVVGHSP 130 (304)
T ss_dssp EECESCCHHHHHHHHHHHHHHHHTEEEEESSST---HHHHHHHHHHHHHHHHHTHEEEEEECH
T ss_pred cccccccccchHHHHHHHHHHhhcCcceeeccc---cCCHHHHHHHHHHHHhcCCeeeecccc
Confidence 001111122223333333222223333322111 345677888888999999 55555554
No 115
>PF12890 DHOase: Dihydro-orotase-like; InterPro: IPR024403 This entry represents a small family of dihydro-orotase-like proteins from bacteria.
Probab=98.62 E-value=1.1e-07 Score=72.45 Aligned_cols=136 Identities=24% Similarity=0.285 Sum_probs=82.3
Q ss_pred CCeeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccC
Q 020079 100 GKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITK 179 (331)
Q Consensus 100 g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (331)
||+++|||||.|+|+..+ |....+.... |+..|+...+.. .+++.
T Consensus 1 ~kli~~g~vd~hVhlrep--g~~~keti~t-----------T~~ampnt~paP----------------------a~itv 45 (142)
T PF12890_consen 1 GKLILPGLVDVHVHLREP--GFEAKETIET-----------TWCAMPNTFPAP----------------------AGITV 45 (142)
T ss_pred Cceeehhhhhhhhhhhcc--cchhhhhhhc-----------eeeecCccCCCC----------------------cceee
Confidence 689999999999999988 6555444422 555554332211 00100
Q ss_pred CChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHH----HHHHHcCCCC
Q 020079 180 WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQ----KRMIELGITG 255 (331)
Q Consensus 180 ~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~----~~~~~~G~~~ 255 (331)
+ +.|...+ .++..+........+.+.++. .+.+.++..|||+......+. +.-.+.|+.
T Consensus 46 --~-----------~~~~e~~--afsddg~giq~~~lm~eamk~-a~l~~~i~ahceDd~l~~~g~v~~ge~~q~~g~~- 108 (142)
T PF12890_consen 46 --E-----------DDGEEAF--AFSDDGYGIQIQLLMYEAMKK-AELDQEIVAHCEDDELTNGGVVHDGELPQFLGVY- 108 (142)
T ss_pred --e-----------ecCcceE--EEecCCceeeeHHHHHHHHHH-HHcccHHHHhhcccccccccccccchhhHHhCCc-
Confidence 0 1111222 223333333345666777777 889999999998875443332 223333420
Q ss_pred cccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH
Q 020079 256 PEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM 294 (331)
Q Consensus 256 ~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~ 294 (331)
.+-.-|...+.+++.+++..|..+|++|.++.
T Consensus 109 -------L~G~cEs~~~~rd~lLak~~g~~yhVchvstk 140 (142)
T PF12890_consen 109 -------LKGNCESVQCARDVLLAKATGCHYHVCHVSTK 140 (142)
T ss_pred -------CCCcchHHHHHHHHHhhhccCCcEEEEEEecc
Confidence 11134667888999999999999999999864
No 116
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=98.58 E-value=2e-06 Score=75.08 Aligned_cols=174 Identities=18% Similarity=0.106 Sum_probs=102.4
Q ss_pred ccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccCC--Chh
Q 020079 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKW--DEV 183 (331)
Q Consensus 106 G~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 183 (331)
-|||+|+|+... ...++.......+...||+-+...+.... .......+.+..+..+...++|... .. .++
T Consensus 2 ~liDtH~HL~~~----~~~~d~~~vi~~a~~~gv~~~~~~g~~~~--~~~~~~~la~~y~~v~~~~G~HP~~-~~~~~~~ 74 (256)
T COG0084 2 MLIDTHCHLDFE----EFDEDRDEVIARAREAGVKKMVVVGTDLE--DFKRALELAEKYPNVYAAVGVHPLD-ADEHSEE 74 (256)
T ss_pred ccEEeeeCCCch----hhcCCHHHHHHHHHHcCCcEEEEeecCHH--HHHHHHHHHHhCCCeEEEEeeCCCc-cccccHH
Confidence 379999999863 23344444566778899998886543221 2222333334444555566666443 22 255
Q ss_pred hHHHHHHHHHH-hCCCeEEEE-EecCCCCc----CCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcc
Q 020079 184 VSDEMEVMVKE-KGINSFKFF-MAYKGSFM----INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPE 257 (331)
Q Consensus 184 ~~~~~~~~~~~-~g~~~ik~~-~~~~~~~~----~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~ 257 (331)
.++.+.+++.. ..+..|... +++.-... ...+.|++-++.|+++++|+.+|+.+..+
T Consensus 75 ~~~~l~~~~~~~~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~~----------------- 137 (256)
T COG0084 75 DLEELEQLAEHHPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRDAHE----------------- 137 (256)
T ss_pred HHHHHHHHHhcCCCeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEccccHH-----------------
Confidence 66777777742 344444331 22221111 13567889999999999999999865322
Q ss_pred cccccCChHHHHHHHHHHHHHHHhcCC-CEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCcccc
Q 020079 258 GHALSRPPLLEGEATTRAIRLAEFVNT-PLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDS 320 (331)
Q Consensus 258 ~~~~~~~~~~e~~~i~~~~~l~~~~g~-~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~ 320 (331)
+.++++++.+. .--+.||-+++. +.++++.+.|..+++..+...-.
T Consensus 138 ----------------d~~~iL~~~~~~~~gi~HcFsGs~-e~a~~~~d~G~yisisG~itfk~ 184 (256)
T COG0084 138 ----------------DTLEILKEEGAPVGGVLHCFSGSA-EEARKLLDLGFYISISGIVTFKN 184 (256)
T ss_pred ----------------HHHHHHHhcCCCCCEEEEccCCCH-HHHHHHHHcCeEEEECceeecCC
Confidence 12233444441 334778855544 78888888888777655544433
No 117
>KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism]
Probab=98.53 E-value=8.4e-07 Score=74.51 Aligned_cols=193 Identities=14% Similarity=0.039 Sum_probs=115.6
Q ss_pred eeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC--cHHHHHHHHHHHhccceeeccccccccC
Q 020079 102 FVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKNSCMDYGFHMAITK 179 (331)
Q Consensus 102 ~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (331)
+-+|+.-|+|+|+.+.. . ..........+||.-..-|.+..+. ...+.+...+... .....-.+-+...-
T Consensus 5 l~i~~~~DmHvHlR~g~--m-----l~aVvP~~a~ggvs~AyvMPNL~PPiTt~da~i~YkK~i~-kL~skttfLMslYL 76 (344)
T KOG2902|consen 5 LTITQPDDMHVHLRDGD--M-----LHAVVPHSASGGVSRAYVMPNLKPPITTTDAAIIYKKFIM-KLPSKTTFLMSLYL 76 (344)
T ss_pred EecCCccceeEEeccCC--e-----eeeeccccccCceeEEEEcCCCCCCcchHHHHHHHHHHHH-hcCccceeEEEEee
Confidence 34688999999998751 1 0011122356889988888765554 3333333322221 11111111111222
Q ss_pred CChhhHHHHHHHHHHhCCCeEEEEEecCCC---CcCC--HHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCC
Q 020079 180 WDEVVSDEMEVMVKEKGINSFKFFMAYKGS---FMIN--DELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGIT 254 (331)
Q Consensus 180 ~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~---~~~~--~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~ 254 (331)
..+...+++.+..++.++.++|.|..+... ..++ -..+..+++...+.|+++.+|-|-+...+.
T Consensus 77 s~~ttPe~I~eAa~~~~irgVK~YPaGaTTNS~~GV~~~f~~fyPvf~aMqe~nm~LnvHGEvpps~D~----------- 145 (344)
T KOG2902|consen 77 SDKTTPEEIREAAESGVIRGVKLYPAGATTNSQDGVTDLFGKFYPVFEAMQEQNMPLNVHGEVPPSIDG----------- 145 (344)
T ss_pred cCCCCHHHHHHHHHhCceeeEEeccCcccccccccccccchhhhHHHHHHHHcCceEEecCCCCCccCC-----------
Confidence 223345667777755677899988654211 1112 345667888999999999999876543321
Q ss_pred CcccccccCChHHHHHHHHHHHHHHHhc-CCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079 255 GPEGHALSRPPLLEGEATTRAIRLAEFV-NTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN 323 (331)
Q Consensus 255 ~~~~~~~~~~~~~e~~~i~~~~~l~~~~-g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~ 323 (331)
| .-.+|...+...+++..+. ..++.+.||++.++++.++.++ +..|...+++||+.++.
T Consensus 146 ----~----Vf~aE~~Flptll~LhqrfP~LKivlEHcTt~dAv~~ve~a~--~~sVaaTvTahHL~Lt~ 205 (344)
T KOG2902|consen 146 ----H----VFDAEKIFLPTLLQLHQRFPQLKIVLEHCTTMDAVNFVESAK--EGSVAATVTAHHLLLTR 205 (344)
T ss_pred ----c----eecchhhhHHHHHHHHHhCccceeHHHhcccHHHHHHHHhhc--CCceeeEeehheeEEeh
Confidence 0 1122334455566666555 5788899999999888887765 66788889999988753
No 118
>PRK10812 putative DNAse; Provisional
Probab=98.51 E-value=2.1e-06 Score=75.85 Aligned_cols=127 Identities=15% Similarity=0.150 Sum_probs=69.1
Q ss_pred cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccCCChhhHH
Q 020079 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSD 186 (331)
Q Consensus 107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (331)
+||+|+|+...... ...++.....+.+...||..++..+... .+... .....+..+.....+++|..... .+..++
T Consensus 3 ~iDtH~Hl~~~~~~-~~~~d~~~vl~~a~~~gv~~~~~~~~~~-~~~~~-~~~l~~~~~~v~~~~GiHP~~~~-~~~~~~ 78 (265)
T PRK10812 3 LVDSHCHLDGLDYQ-SLHKDVDDVLAKAAARDVKFCLAVATTL-PGYRH-MRDLVGERDNVVFSCGVHPLNQD-EPYDVE 78 (265)
T ss_pred eEEeccCCCCccch-hhhcCHHHHHHHHHHcCCCEEEEeCCCH-HHHHH-HHHHHhhCCCeEEEEEeCCCCCC-ChhHHH
Confidence 79999999742000 1123444556777889998877544211 11222 22222222334445555543222 233456
Q ss_pred HHHHHHHHhCCCeE-EEEEecCC---CCcCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079 187 EMEVMVKEKGINSF-KFFMAYKG---SFMINDELLIEGFKRCKSLGALAMVHAEN 237 (331)
Q Consensus 187 ~~~~~~~~~g~~~i-k~~~~~~~---~~~~~~~~l~~~~~~A~~~g~~v~~H~e~ 237 (331)
.+.++.+...+.+| .+.+++.. ......+.|++.++.|+++++|+.+|+.+
T Consensus 79 ~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~ 133 (265)
T PRK10812 79 ELRRLAAEEGVVAMGETGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHTRD 133 (265)
T ss_pred HHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeC
Confidence 66666533334445 23333321 11223567889999999999999999854
No 119
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=98.49 E-value=4e-06 Score=73.46 Aligned_cols=125 Identities=18% Similarity=0.134 Sum_probs=67.0
Q ss_pred cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeecccccccc-CCChhhH
Q 020079 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT-KWDEVVS 185 (331)
Q Consensus 107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 185 (331)
++|+|+|+... .. ..+.....+.+..+||++++.+.... ...+.+....+...+.....+++.... ...++..
T Consensus 1 ~~D~H~H~~~~--~~--~~~~~~~l~~~~~~gv~~~v~~~~~~--~~~~~~~~la~~~~~i~~~~G~hP~~~~~~~~~~~ 74 (251)
T cd01310 1 LIDTHCHLDFP--QF--DADRDDVLARAREAGVIKIIVVGTDL--KSSKRALELAKKYDNVYAAVGLHPHDADEHVDEDL 74 (251)
T ss_pred CEEeeeCCCch--hh--ccCHHHHHHHHHHcCCCEEEEeCCCH--HHHHHHHHHHHhCCCeEEEEeeCcchhhcCCHHHH
Confidence 68999999754 11 12333445666788999988775432 112222222222222222233332111 1112345
Q ss_pred HHHHHHHHHhCCCeEE-EEEecCCCC---cCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079 186 DEMEVMVKEKGINSFK-FFMAYKGSF---MINDELLIEGFKRCKSLGALAMVHAEN 237 (331)
Q Consensus 186 ~~~~~~~~~~g~~~ik-~~~~~~~~~---~~~~~~l~~~~~~A~~~g~~v~~H~e~ 237 (331)
++++++.+..+..+++ +.++..... ....+.++.+++.|+++++|+.+|+..
T Consensus 75 ~~l~~~~~~~~~~~IGeiGld~~~~~~~~~~q~~~~~~~~~~a~e~~~pv~iH~~~ 130 (251)
T cd01310 75 DLLELLAANPKVVAIGEIGLDYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSRD 130 (251)
T ss_pred HHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeC
Confidence 6666665334555553 222222111 134577899999999999999999854
No 120
>KOG3892 consensus N-acetyl-glucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=98.47 E-value=2.6e-07 Score=78.79 Aligned_cols=91 Identities=15% Similarity=0.152 Sum_probs=66.7
Q ss_pred cEEEECcEEEeCCCceeeeEEEeCCEEEEeeCC--CCCCCCceEEeCCCCeeecccccccccccCCCCCCCChhhH----
Q 020079 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPN--INVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDF---- 127 (331)
Q Consensus 54 ~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~--~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~---- 127 (331)
-+.+.|++|+........++||+||||..-.+- .+.......|||.|+++.|||||.....+....-....+++
T Consensus 13 llQFtNCrilR~g~l~~edlWVR~GRIldpe~vFFeErt~Ad~riDCgG~IlaPGfIDlQiNGGfGvDFS~dte~~~eGv 92 (407)
T KOG3892|consen 13 LLQFTNCRILRGGKLLREDLWVRGGRILDPEKVFFEERTVADERIDCGGRILAPGFIDLQINGGFGVDFSQDTEDVGEGV 92 (407)
T ss_pred eeeeeeeEEeeCCceeehheeEeCCeecCcccccceeccchhheeccCCeeecCceEEEEecCccccccccchhhhhhhH
Confidence 367899999988888888999999999864431 11222457899999999999999999877652111223333
Q ss_pred HHHHHHHHhCCceEEec
Q 020079 128 FSGQAAALAGGTTMHID 144 (331)
Q Consensus 128 ~~~~~~~l~~GvTtv~d 144 (331)
...++..+++|||++.-
T Consensus 93 AlVAr~ll~hGvtsf~P 109 (407)
T KOG3892|consen 93 ALVARQLLSHGVTSFCP 109 (407)
T ss_pred HHHHHHHHhcCCCcCCC
Confidence 34467789999999874
No 121
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=98.47 E-value=3.7e-06 Score=73.78 Aligned_cols=125 Identities=18% Similarity=0.147 Sum_probs=65.3
Q ss_pred cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccCC-ChhhH
Q 020079 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKW-DEVVS 185 (331)
Q Consensus 107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 185 (331)
|||+|+|+... ... ++.....+.+...|+++++++.... ... +.+....+..++.....+++...... ..+..
T Consensus 1 ~iD~H~Hl~~~--~~~--~~~~~~~~~~~~~Gv~~~v~~~~~~-~~~-~~~~~~~~~~~~i~~~~GihP~~~~~~~~~~~ 74 (252)
T TIGR00010 1 LIDAHCHLDFL--DFE--EDVEEVIERAKAAGVTAVVAVGTDL-EDF-LRALELAEKYPNVYAAVGVHPLDVDDDTKEDI 74 (252)
T ss_pred CEEeccCCCCh--hhc--cCHHHHHHHHHHcCCCEEEEecCCH-HHH-HHHHHHHHHCCCEEEEEEeCcchhhcCCHHHH
Confidence 68999998754 111 1333346667789999998765331 111 22222222222323333333211111 12344
Q ss_pred HHHHHHHHHhCCCeEEEE-EecCCCCcC---CHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079 186 DEMEVMVKEKGINSFKFF-MAYKGSFMI---NDELLIEGFKRCKSLGALAMVHAEN 237 (331)
Q Consensus 186 ~~~~~~~~~~g~~~ik~~-~~~~~~~~~---~~~~l~~~~~~A~~~g~~v~~H~e~ 237 (331)
+++++.++..+..++... +++...... ..+.+++.++.|+++|+|+.+|+..
T Consensus 75 ~~l~~~l~~~~~~~iGEiGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~ 130 (252)
T TIGR00010 75 KELERLAAHPKVVAIGETGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHARD 130 (252)
T ss_pred HHHHHHccCCCEEEEEecccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEecC
Confidence 556555533344445332 222211110 2478889999999999999999853
No 122
>PRK10425 DNase TatD; Provisional
Probab=98.37 E-value=8.2e-06 Score=71.83 Aligned_cols=124 Identities=10% Similarity=0.091 Sum_probs=67.4
Q ss_pred cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeecccccccc-CCChhhH
Q 020079 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT-KWDEVVS 185 (331)
Q Consensus 107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 185 (331)
|||+|+|+... . ..++.....+.+...||..+...+... ..... .....+..+.....+++|.... ...++..
T Consensus 1 ~iDtH~HL~~~--~--~~~d~~~vl~~a~~~gv~~~i~~~~~~-~~~~~-~~~l~~~~~~v~~~~GiHP~~~~~~~~~~~ 74 (258)
T PRK10425 1 MFDIGVNLTSS--Q--FAKDRDDVVARAFAAGVNGMLITGTNL-RESQQ-AQKLARQYPSCWSTAGVHPHDSSQWQAATE 74 (258)
T ss_pred CEEeeeCcCCh--h--hhccHHHHHHHHHHCCCCEEEEeCCCH-HHHHH-HHHHHHhCCCEEEEEEeCcCccccCCHHHH
Confidence 68999999753 1 124455556777888998877554321 12222 2222223333444555554322 2224445
Q ss_pred HHHHHHHHHhCCCeEE-EEEecCCC---CcCCHHHHHHHHHHHHHcCCcEEEEcC
Q 020079 186 DEMEVMVKEKGINSFK-FFMAYKGS---FMINDELLIEGFKRCKSLGALAMVHAE 236 (331)
Q Consensus 186 ~~~~~~~~~~g~~~ik-~~~~~~~~---~~~~~~~l~~~~~~A~~~g~~v~~H~e 236 (331)
+.+.++.+...+.+|. +.+++... .....+.|++.++.|+++++|+.+|+.
T Consensus 75 ~~l~~~~~~~~~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r 129 (258)
T PRK10425 75 EAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHCR 129 (258)
T ss_pred HHHHHhccCCCEEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 5566555222223333 22333211 111246788999999999999999985
No 123
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=98.36 E-value=2.5e-05 Score=68.83 Aligned_cols=128 Identities=17% Similarity=0.164 Sum_probs=69.3
Q ss_pred ecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeecccccccc-CCCh
Q 020079 104 MPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT-KWDE 182 (331)
Q Consensus 104 ~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 182 (331)
.+.+||+|+|+... ...++.......+...||+.++.++... .+....+ ...+..+.....+++|.... ...+
T Consensus 2 ~~~~iD~HcHl~~~----~~~~~~~~~l~~a~~~gv~~~~~~~~~~-~~~~~~~-~l~~~~~~v~~~~GiHP~~~~~~~~ 75 (258)
T PRK11449 2 ICRFIDTHCHFDFP----PFSGDEEASLQRAAQAGVGKIIVPATEA-ENFARVL-ALAERYQPLYAALGLHPGMLEKHSD 75 (258)
T ss_pred CceEEEeccCCCCh----hhccCHHHHHHHHHHCCCCEEEEeeCCH-HHHHHHH-HHHHhCCCEEEEEeeCcCccccCCH
Confidence 35689999999753 1122344445667788999888654311 1222222 22223333444455554332 2233
Q ss_pred hhHHHHHHHHHHh--CCCeEEE-EEecCCC---CcCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079 183 VVSDEMEVMVKEK--GINSFKF-FMAYKGS---FMINDELLIEGFKRCKSLGALAMVHAEN 237 (331)
Q Consensus 183 ~~~~~~~~~~~~~--g~~~ik~-~~~~~~~---~~~~~~~l~~~~~~A~~~g~~v~~H~e~ 237 (331)
+..+.+.++.+.. .+.+|.. .+++... .....+.|++.++.|+++++|+.+|+.+
T Consensus 76 ~~~~~l~~~l~~~~~~~~aIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~ 136 (258)
T PRK11449 76 VSLDQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRR 136 (258)
T ss_pred HHHHHHHHHHHhCCCCEEEEEecccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEecC
Confidence 4455666555222 2233322 1221111 1123567889999999999999999864
No 124
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=98.35 E-value=2e-05 Score=70.89 Aligned_cols=207 Identities=16% Similarity=0.101 Sum_probs=102.4
Q ss_pred ccccccccccCCCCCC---------CC---hhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeecc
Q 020079 106 GGIDPHTHLAMEFMGS---------ET---IDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYG 172 (331)
Q Consensus 106 G~ID~H~H~~~~~~~~---------~~---~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 172 (331)
|++.+|=|+...+.+. .. .+......+.+.++|||+++|.+..... ......+..++.+.+.....+
T Consensus 1 g~~~~heh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttiv~~~~~~~~~~~~~~~~~~~~~g~~v~~~~G 80 (293)
T cd00530 1 GVTLTHEHLIIDSSGFVRDPPEVDDFDLADVEAAKEELKRFRAHGGRTIVDATPPGIGRDVEKLAEVARATGVNIVAATG 80 (293)
T ss_pred CcccccCCeeecChhhccCcccccccchhhHHHHHHHHHHHHHcCCCeEEEcCCcccCcCHHHHHHHHHHhCCcEEEecc
Confidence 6788888886543211 11 1223344566788999999998754222 333333333333323344444
Q ss_pred ccccccC------CC-hhhHHHHHHHHHH----hCC--CeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCc-
Q 020079 173 FHMAITK------WD-EVVSDEMEVMVKE----KGI--NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG- 238 (331)
Q Consensus 173 ~~~~~~~------~~-~~~~~~~~~~~~~----~g~--~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~- 238 (331)
++..... .. ++..+.+.+.... .++ ..++....+........+.|++.++.|++.|+|+++|+.+.
T Consensus 81 ~hp~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~IGEigld~~~~~~q~~~f~~~~~lA~~~~~Pv~iH~~~~~ 160 (293)
T cd00530 81 FYKDAFYPEWVRLRSVEELTDMLIREIEEGIEGTGIKAGIIKEAGGSPAITPLEEKVLRAAARAQKETGVPISTHTQAGL 160 (293)
T ss_pred cCCCccChHHHhhCCHHHHHHHHHHHHHhccccCCcCceEEEEeecCCCCCHHHHHHHHHHHHHHHHHCCeEEEcCCCCc
Confidence 4432110 11 1111111111111 121 12433322222223345678899999999999999998643
Q ss_pred hhhHHHHHHHHHcCCCCcc---cccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH---------HHHHHHHHHHHc
Q 020079 239 DAVFEGQKRMIELGITGPE---GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM---------DAMEEIAKARKA 306 (331)
Q Consensus 239 ~~~~~~~~~~~~~G~~~~~---~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~---------~~~~~i~~~~~~ 306 (331)
.......+.+.+.|..... .|+.... .. +.+..+.+.|+-+.+.+..+. ...+.++++.+.
T Consensus 161 ~~~~~~l~~l~~~g~~~~~~vi~H~~~~~---~~----~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (293)
T cd00530 161 TMGLEQLRILEEEGVDPSKVVIGHLDRND---DP----DYLLKIAALGAYLEFDGIGKDKIFGYPSDETRADAVKALIDE 233 (293)
T ss_pred cccHHHHHHHHHcCCChhheEEeCCCCCC---CH----HHHHHHHhCCCEEEeCCCCcccccCCCCHHHHHHHHHHHHHC
Confidence 2333444556666664322 2222111 01 123333445766555554322 244567777777
Q ss_pred CC--CEEEecCCccc
Q 020079 307 GP--NFLNTTIPLCD 319 (331)
Q Consensus 307 Gi--~v~~~~~p~~~ 319 (331)
|. ++.++|.-++.
T Consensus 234 ~~~d~ill~TD~p~~ 248 (293)
T cd00530 234 GYGDRLLLSHDVFRK 248 (293)
T ss_pred CCcCCEEEeCCcCch
Confidence 75 56777765554
No 125
>PRK09358 adenosine deaminase; Provisional
Probab=98.30 E-value=5.1e-05 Score=69.82 Aligned_cols=112 Identities=16% Similarity=0.082 Sum_probs=68.9
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEe
Q 020079 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290 (331)
Q Consensus 211 ~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H 290 (331)
..+.+.++++++.|+++|+++++|+..........+.+...|... -.|+..... -++.++++++.|+.+.+|.
T Consensus 178 ~~~~~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~~~al~~lg~~r-i~Hg~~l~~------~~~~~~~l~~~gi~v~~cP 250 (340)
T PRK09358 178 GFPPSKFARAFDRARDAGLRLTAHAGEAGGPESIWEALDELGAER-IGHGVRAIE------DPALMARLADRRIPLEVCP 250 (340)
T ss_pred CCCHHHHHHHHHHHHHCCCCeEEcCCCCCchhHHHHHHHHcCCcc-cchhhhhcc------CHHHHHHHHHcCCeEEECC
Confidence 457889999999999999999999842221222222333345432 233322110 1345677888888766666
Q ss_pred CCCH---H----HHHHHHHHHHcCCCEEEecCCccccchhhhhhhc
Q 020079 291 VMSM---D----AMEEIAKARKAGPNFLNTTIPLCDSCSNIIRMVE 329 (331)
Q Consensus 291 ~~~~---~----~~~~i~~~~~~Gi~v~~~~~p~~~~~~~~~~~~~ 329 (331)
.|+. . ...+++++.++|++|+.+|.--..+...+.+.|.
T Consensus 251 ~Sn~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~e~~ 296 (340)
T PRK09358 251 TSNVQTGAVPSLAEHPLKTLLDAGVRVTINTDDPLVFGTTLTEEYE 296 (340)
T ss_pred CccccccccCCcccChHHHHHHCCCEEEECCCCCcccCCCHHHHHH
Confidence 5541 1 3468999999999999887633223345555554
No 126
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=98.23 E-value=1.7e-05 Score=69.86 Aligned_cols=124 Identities=15% Similarity=0.109 Sum_probs=67.7
Q ss_pred ccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhcc-ceeeccccccccCC-ChhhH
Q 020079 108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKN-SCMDYGFHMAITKW-DEVVS 185 (331)
Q Consensus 108 ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~ 185 (331)
||+|+|+... . ..++.....+.+...|++.++.+..... ... .........+. ....+++|...... .++..
T Consensus 1 iD~H~Hl~~~--~--~~~~~~~~~~~~~~~g~~~~i~~~~~~~-~~~-~~~~~~~~~~~~v~~~~GiHP~~~~~~~~~~~ 74 (255)
T PF01026_consen 1 IDAHCHLDSP--R--FEEDRPEVLERAREAGVSAIIIVSTDPE-DWE-RVLELASQYPDRVYPALGIHPWEAHEVNEEDL 74 (255)
T ss_dssp EEEEE-TTSG--G--GTTTHHHHHHHHHHTTEEEEEEEESSHH-HHH-HHHHHHHHTTTEEEEEE---GGGGGGHSHHHH
T ss_pred CcCccCCCCh--h--hCcCHHHHHHHHHHcCCCEEEEcCCCHH-HhH-HHHHHHhcCCCeEEEEecCCcchhhhhhHHHH
Confidence 7999999863 1 1233444567788999999875543221 222 22222222222 45555655433222 34445
Q ss_pred HHHHHH--HHHhCCCeEEE-EEecCCCC----cCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079 186 DEMEVM--VKEKGINSFKF-FMAYKGSF----MINDELLIEGFKRCKSLGALAMVHAEN 237 (331)
Q Consensus 186 ~~~~~~--~~~~g~~~ik~-~~~~~~~~----~~~~~~l~~~~~~A~~~g~~v~~H~e~ 237 (331)
+.+.++ .....+.+|.. .+++.... ....+.|++.++.|+++++|+.+|+..
T Consensus 75 ~~l~~l~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~ 133 (255)
T PF01026_consen 75 EELEELINLNRPKVVAIGEIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCRK 133 (255)
T ss_dssp HHHHHHHHHTSTTEEEEEEEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEES
T ss_pred HHHHHHHHhccccceeeeeeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecCC
Confidence 666666 32334445533 34441111 123567889999999999999999865
No 127
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=98.16 E-value=0.00013 Score=63.72 Aligned_cols=189 Identities=18% Similarity=0.138 Sum_probs=103.2
Q ss_pred eeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCC--cHHHHHHHHHHHhccceee--ccccccc
Q 020079 102 FVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKNSCMD--YGFHMAI 177 (331)
Q Consensus 102 ~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~ 177 (331)
+-+..-.|.|+|+... +.+...... .+-++.-.+-|.+..+. +..+.+...++.....+.. +-.-+..
T Consensus 5 l~i~rPdDwHlHLRdg-------~mL~~V~p~-ts~~f~rAiIMPNL~pPvtt~~~a~aYr~rIl~a~p~~~~F~PLMtl 76 (344)
T COG0418 5 LTIRRPDDWHLHLRDG-------AMLKAVVPY-TSRGFGRAIIMPNLVPPVTTVADALAYRERILKAVPAGHRFTPLMTL 76 (344)
T ss_pred eeccCccceeEEecCc-------cHHHHhhhh-hhhhcceEEEcCCCCCCcccHHHHHHHHHHHHHhCcCCCCCceeEEE
Confidence 3456678999999875 111111111 12255555556554444 3333333322222111111 1111111
Q ss_pred cCCChhhHHHHHHHHHHhC-CCeEEEEEecCCC----CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcC
Q 020079 178 TKWDEVVSDEMEVMVKEKG-INSFKFFMAYKGS----FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELG 252 (331)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~g-~~~ik~~~~~~~~----~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G 252 (331)
.-.++...+++++.. +.| +.++|.|..+... -..+-+.+..+++..++.|+++.+|.|........
T Consensus 77 YLtd~~~peel~~a~-~~g~i~a~KlYPaGaTTNS~~GV~~~~~~~pvle~Mq~~gmpLlvHGEvt~~~vDi-------- 147 (344)
T COG0418 77 YLTDSTTPEELEEAK-AKGVIRAVKLYPAGATTNSDSGVTDIEKIYPVLEAMQKIGMPLLVHGEVTDAEVDI-------- 147 (344)
T ss_pred EecCCCCHHHHHHHH-hcCcEEEEEeccCCccccCcCCcCcHHHHHHHHHHHHHcCCeEEEecccCCccccc--------
Confidence 112223456777766 444 7788998754211 12246778889999999999999998654322111
Q ss_pred CCCcccccccCChHHHHHHHHHHH-HHHHh-cCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 253 ITGPEGHALSRPPLLEGEATTRAI-RLAEF-VNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 253 ~~~~~~~~~~~~~~~e~~~i~~~~-~l~~~-~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
.. .|...++..+ .+... ...++.+.|+++.++.+.+ ++.+-|+++..+|||+.+.
T Consensus 148 -fd-----------rE~~Fi~~vl~pl~~~fP~LKIV~EHiTT~dav~~v---~~~~~nlaATIT~hHL~~n 204 (344)
T COG0418 148 -FD-----------REAAFIESVLEPLRQRFPKLKIVLEHITTKDAVEYV---KDANNNLAATITPHHLLLN 204 (344)
T ss_pred -hh-----------hHHHHHHHHHHHHHhhCCcceEEEEEeccHHHHHHH---HhcCcceeeEeehhheeee
Confidence 00 1112222222 22222 2578999999998885555 4557779999999998764
No 128
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=98.15 E-value=4.8e-05 Score=63.45 Aligned_cols=120 Identities=18% Similarity=0.172 Sum_probs=59.5
Q ss_pred cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEe----cCcCCCCC-cHHHHHHHHH--------HHhccceeeccc
Q 020079 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHI----DFVIPING-SLTAGFEAYE--------KKAKNSCMDYGF 173 (331)
Q Consensus 107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~----d~~~~~~~-~~~~~~~~~~--------~~~~~~~~~~~~ 173 (331)
+||+|+|++.. ..+++. .+..+||.+++ |.....+. ...+-++... +.+.+..+..+.
T Consensus 2 ~iD~HiH~d~r-----~~eDle----kMa~sGI~~Vit~AhdP~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGv 72 (254)
T COG1099 2 YIDSHIHLDVR-----GFEDLE----KMALSGIREVITLAHDPYPMKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGV 72 (254)
T ss_pred ccccccccccc-----cHHHHH----HHHHhChhhhhhcccCCCCcccHHHHHHHHHHHHccchhhHHhhCceeeEEecc
Confidence 69999999764 234443 33445555544 44322221 1111111111 112223344444
Q ss_pred cccccCC-ChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcC
Q 020079 174 HMAITKW-DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE 236 (331)
Q Consensus 174 ~~~~~~~-~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e 236 (331)
+...... -++.+.++..+....++..|... +.........+.|+..+++|+++++|+.+|..
T Consensus 73 HPr~iP~e~~~~l~~L~~~l~~e~VvAiGEi-GLe~~t~~E~evf~~QL~LA~e~dvPviVHTP 135 (254)
T COG1099 73 HPRAIPPELEEVLEELEELLSNEDVVAIGEI-GLEEATDEEKEVFREQLELARELDVPVIVHTP 135 (254)
T ss_pred CCCCCCchHHHHHHHHHhhcccCCeeEeeec-ccccCCHHHHHHHHHHHHHHHHcCCcEEEeCC
Confidence 4332221 23345556555533344455332 11111112345688999999999999999963
No 129
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=98.15 E-value=0.00017 Score=65.99 Aligned_cols=97 Identities=19% Similarity=0.193 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeC
Q 020079 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (331)
Q Consensus 212 ~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~ 291 (331)
.+.+.++.+++.|+++|+++++|+..........+.+...|... -.|+.... .-++.++++++.|+.+.++..
T Consensus 170 ~~~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~~g~~~-i~H~~~l~------~~~~~~~~l~~~gi~v~~~P~ 242 (325)
T cd01320 170 FPPEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLLGAER-IGHGIRAI------EDPELVKRLAERNIPLEVCPT 242 (325)
T ss_pred CCHHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHHcCCcc-cchhhccC------ccHHHHHHHHHcCCeEEECCC
Confidence 47899999999999999999999733222222233344455432 23332211 012456778888887666654
Q ss_pred CCH---H----HHHHHHHHHHcCCCEEEecC
Q 020079 292 MSM---D----AMEEIAKARKAGPNFLNTTI 315 (331)
Q Consensus 292 ~~~---~----~~~~i~~~~~~Gi~v~~~~~ 315 (331)
++. . ....++++.++|++|+.++.
T Consensus 243 sn~~l~~~~~~~~~p~~~l~~~Gv~v~lgTD 273 (325)
T cd01320 243 SNVQTGAVKSLAEHPLRELLDAGVKVTINTD 273 (325)
T ss_pred ccccccccCCcccChHHHHHHCCCEEEECCC
Confidence 432 1 14679999999999998774
No 130
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=98.13 E-value=0.00013 Score=66.74 Aligned_cols=98 Identities=17% Similarity=0.114 Sum_probs=63.4
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEe
Q 020079 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290 (331)
Q Consensus 211 ~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H 290 (331)
..+.+.++.+++.|+++|+++++|+............+...|... -.|+..... -.+.++++++.|+.+.+|.
T Consensus 168 ~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~~r-i~Hg~~l~~------~~~~i~~l~~~gi~v~~cP 240 (324)
T TIGR01430 168 GGPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGATR-IGHGVRALE------DPELLKRLAQENITLEVCP 240 (324)
T ss_pred CCCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCchh-cchhhhhcc------CHHHHHHHHHcCceEEECC
Confidence 456889999999999999999999742211112223334455532 233322110 1346788888888766666
Q ss_pred CCCH-------HHHHHHHHHHHcCCCEEEecC
Q 020079 291 VMSM-------DAMEEIAKARKAGPNFLNTTI 315 (331)
Q Consensus 291 ~~~~-------~~~~~i~~~~~~Gi~v~~~~~ 315 (331)
.++. ....+++++.++|++|+.+|.
T Consensus 241 ~Sn~~l~~~~~~~~~pi~~l~~~Gv~v~igTD 272 (324)
T TIGR01430 241 TSNVALGVVKSLAEHPLRRFLEAGVKVTLNSD 272 (324)
T ss_pred cccccccccCCcccChHHHHHHCCCEEEECCC
Confidence 5542 125689999999999998775
No 131
>PRK09875 putative hydrolase; Provisional
Probab=98.04 E-value=0.00028 Score=63.12 Aligned_cols=149 Identities=13% Similarity=0.091 Sum_probs=71.3
Q ss_pred ccccccccccCCCCCC--------CChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHH-hccceeecccccc
Q 020079 106 GGIDPHTHLAMEFMGS--------ETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK-AKNSCMDYGFHMA 176 (331)
Q Consensus 106 G~ID~H~H~~~~~~~~--------~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 176 (331)
|+..+|=|+...+.+. ...+......+...+.|+.|++|+....-+.....+....+. +-+....-+++..
T Consensus 7 G~tl~HEHl~~~~~~~~~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~tgv~Iv~~TG~y~~ 86 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQD 86 (292)
T ss_pred CcceecCCeEecChhhcCCcccccccHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHhCCcEEEcCcCCCC
Confidence 8889999986542111 112223344455677899999998765544333333333222 2222222222211
Q ss_pred cc------C-CChhhHHHHHHHHHHhCC-------CeE-EEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhh
Q 020079 177 IT------K-WDEVVSDEMEVMVKEKGI-------NSF-KFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAV 241 (331)
Q Consensus 177 ~~------~-~~~~~~~~~~~~~~~~g~-------~~i-k~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~ 241 (331)
.. . ..++..+.+.+-+ ..|. ..| ++..++........+.|+++...+++.|.|+.+|.......
T Consensus 87 ~~~p~~~~~~~~e~la~~~i~ei-~~Gi~gt~ikaGvIGeiG~~~~~it~~E~kvl~Aaa~a~~~TG~pi~~Ht~~~~~g 165 (292)
T PRK09875 87 AFFPEHVATRSVQELAQEMVDEI-EQGIDGTELKAGIIAEIGSSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFSTMG 165 (292)
T ss_pred ccCCHHHhcCCHHHHHHHHHHHH-HHhhccCCCcccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCcEEEcCCCccch
Confidence 10 0 1122222222222 1222 224 22222221122234567888888899999999996433222
Q ss_pred HHHHHHHHHcCCCC
Q 020079 242 FEGQKRMIELGITG 255 (331)
Q Consensus 242 ~~~~~~~~~~G~~~ 255 (331)
.+..+.+.+.|+.-
T Consensus 166 ~e~l~il~e~Gvd~ 179 (292)
T PRK09875 166 LEQLALLQAHGVDL 179 (292)
T ss_pred HHHHHHHHHcCcCc
Confidence 22344555656543
No 132
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=97.93 E-value=0.00018 Score=64.88 Aligned_cols=178 Identities=17% Similarity=0.120 Sum_probs=91.0
Q ss_pred ccccccccccCCCCCC--------C----ChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHH-Hhccceeecc
Q 020079 106 GGIDPHTHLAMEFMGS--------E----TIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEK-KAKNSCMDYG 172 (331)
Q Consensus 106 G~ID~H~H~~~~~~~~--------~----~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 172 (331)
|++.+|=|+...+.+. . ..+......+...+.|+.|++|+....-+.....+....+ .+-+....-+
T Consensus 7 G~tl~HEHl~~d~~~~~~~~~~~~~~~~~~~~~~~~El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~II~~TG 86 (308)
T PF02126_consen 7 GFTLMHEHLLIDLSGFYKDPDEALDDRDEDVEAAVAELKEFKAAGGRTIVDATPIGLGRDVEALREISRRTGVNIIASTG 86 (308)
T ss_dssp SSEEEEEESEEETTTHHHHTGGGGCGHHHHHHHHHHHHHHHHHTTEEEEEE--SGGGTB-HHHHHHHHHHHT-EEEEEEE
T ss_pred CCeecccCeeecChhhccCCCcchhhhhhhHHHHHHHHHHHHHcCCCEEEecCCcccCcCHHHHHHHHHHhCCeEEEeCC
Confidence 7888999987643211 1 1122223345566799999999976554433333333322 2222222222
Q ss_pred ccccccCC-------ChhhHHHHHHHHHHhCCC-------eEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCc
Q 020079 173 FHMAITKW-------DEVVSDEMEVMVKEKGIN-------SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG 238 (331)
Q Consensus 173 ~~~~~~~~-------~~~~~~~~~~~~~~~g~~-------~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~ 238 (331)
++...... .++..+.+.+-+ ..|++ .||...+...........++++...+++.|+||++|++..
T Consensus 87 ~y~~~~~p~~~~~~s~e~la~~~i~Ei-~~GidgT~ikaG~Ik~~~~~~~it~~E~k~lrAaa~A~~~TG~pI~~H~~~g 165 (308)
T PF02126_consen 87 FYKEPFYPEWVREASVEELADLFIREI-EEGIDGTGIKAGIIKEIGSSNPITPLEEKVLRAAARAHKETGAPISTHTGRG 165 (308)
T ss_dssp E-SGGCSCHHHHTSHHHHHHHHHHHHH-HT-STTSSB-ESEEEEEEBTTBCEHHHHHHHHHHHHHHHHHT-EEEEEESTT
T ss_pred CCccccCChhhhcCCHHHHHHHHHHHH-HhcCCCCccchhheeEeeccCCCCHHHHHHHHHHHHHHHHhCCeEEEcCCCC
Confidence 22211111 111222222222 24544 4666544422222234567788888888999999998544
Q ss_pred h-hhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcC---CCEEEEeCCCHHHHHHHHHHHHcCCCEEEec
Q 020079 239 D-AVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN---TPLYVVHVMSMDAMEEIAKARKAGPNFLNTT 314 (331)
Q Consensus 239 ~-~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g---~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~ 314 (331)
. ...+.. ++..+.| -++.++|+....+++..+++.++|+.|..|+
T Consensus 166 ~~~~~e~~-------------------------------~il~e~Gv~~~rvvigH~D~~~D~~y~~~la~~G~~l~~D~ 214 (308)
T PF02126_consen 166 TRMGLEQL-------------------------------DILEEEGVDPSRVVIGHMDRNPDLDYHRELADRGVYLEFDT 214 (308)
T ss_dssp GTCHHHHH-------------------------------HHHHHTT--GGGEEETSGGGST-HHHHHHHHHTT-EEEETT
T ss_pred CcCHHHHH-------------------------------HHHHHcCCChhHeEEeCCCCCCCHHHHHHHHhcCCEEEecC
Confidence 3 222222 3333444 3588889876666777888888898888876
Q ss_pred C
Q 020079 315 I 315 (331)
Q Consensus 315 ~ 315 (331)
.
T Consensus 215 ~ 215 (308)
T PF02126_consen 215 I 215 (308)
T ss_dssp T
T ss_pred C
Confidence 6
No 133
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=97.70 E-value=0.0021 Score=56.57 Aligned_cols=180 Identities=18% Similarity=0.115 Sum_probs=91.4
Q ss_pred ccccccccccCCC---CCCCC------hhhH---HHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeecc
Q 020079 106 GGIDPHTHLAMEF---MGSET------IDDF---FSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYG 172 (331)
Q Consensus 106 G~ID~H~H~~~~~---~~~~~------~~~~---~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 172 (331)
|+..+|=|+.... .+... .+.+ ........+.|+-|++|+....-+ +.....+..++.+.+....-+
T Consensus 17 GvTl~HEHl~~~~~~~~~~~~~d~~~~~~~~a~~~~e~~~~~a~Gg~TIVD~T~~~~GRdv~~m~~vs~atglnIV~~TG 96 (316)
T COG1735 17 GVTLMHEHLFIDPYEIAGGLKNDPYDEDDEVALAIAELKRLMARGGQTIVDATNIGIGRDVLKMRRVAEATGLNIVAATG 96 (316)
T ss_pred cceeehhhhccchHHHhhcCCCCcccccHHHHHHHHHHHHHHHcCCCeEeeCCccccCcCHHHHHHHHHHhCCcEEEecc
Confidence 7788888876531 11111 1111 122344567899999999765544 333333333333333222222
Q ss_pred ccccccC------CC-hhhHHHHHHHHHHhCCC-------eEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCc
Q 020079 173 FHMAITK------WD-EVVSDEMEVMVKEKGIN-------SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG 238 (331)
Q Consensus 173 ~~~~~~~------~~-~~~~~~~~~~~~~~g~~-------~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~ 238 (331)
++..... .+ ++..+.+.+-+ +.|.. .||...+..+.....++.|+++....++.|.|+++|.+..
T Consensus 97 fy~~~~~p~~~~~~~i~~~ae~~v~ei-~~Gi~gT~ikAGiIk~~~~~~~iTp~Eek~lrAaA~A~~~Tg~Pi~tHt~~g 175 (316)
T COG1735 97 FYKAAFHPEYFALRPIEELAEFVVKEI-EEGIAGTGIKAGIIKEAGGSPAITPLEEKSLRAAARAHKETGAPISTHTPAG 175 (316)
T ss_pred ccccccchhHHhhCCHHHHHHHHHHHH-HhcccCCccccceeeeccCcccCCHHHHHHHHHHHHHhhhcCCCeEEeccch
Confidence 2211111 11 22223333333 23422 3444333332222234567777777788899999997544
Q ss_pred hhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCC-CHHHHHHHHHHHHcCCCEEEec
Q 020079 239 DAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM-SMDAMEEIAKARKAGPNFLNTT 314 (331)
Q Consensus 239 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~-~~~~~~~i~~~~~~Gi~v~~~~ 314 (331)
..--+..+.+.++|+.- .++.++|+. +.+.+.-.+.++.+|..+..|.
T Consensus 176 t~g~eq~~il~~egvdl----------------------------~~v~igH~d~n~dd~~y~~~l~~~Ga~l~fD~ 224 (316)
T COG1735 176 TMGLEQLRILAEEGVDL----------------------------RKVSIGHMDPNTDDVYYQKKLADRGAFLEFDR 224 (316)
T ss_pred hhhHHHHHHHHHcCCCh----------------------------hHeeEeccCCCCChHHHHHHHHhcCceEEecc
Confidence 32222223333333210 247788887 6677777888888888777653
No 134
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=97.66 E-value=0.004 Score=55.09 Aligned_cols=49 Identities=27% Similarity=0.335 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcC
Q 020079 185 SDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE 236 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e 236 (331)
.++++++. ..|+.++|......+. .+.+.+.++++.+.++|+++.+|+.
T Consensus 83 ~~~l~~~~-~~g~rGvRl~~~~~~~--~~~~~~~~~~~~~~~~gl~v~~~~~ 131 (263)
T cd01311 83 DAELKEMH-DAGVRGVRFNFLFGGV--DNKDELDEIAKRAAELGWHVQVYFD 131 (263)
T ss_pred HHHHHHHH-HCCCeEEEEecccCCC--CCHHHHHHHHHHHHHcCCEEEEEeC
Confidence 35666665 6899999876443332 2778889999999999999999975
No 135
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=97.21 E-value=0.022 Score=51.61 Aligned_cols=109 Identities=15% Similarity=0.025 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHHcC-CcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeC
Q 020079 213 NDELLIEGFKRCKSLG-ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (331)
Q Consensus 213 ~~~~l~~~~~~A~~~g-~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~ 291 (331)
+...+...++.|++.| +++.+|+..........+. ...+ ...-+|+...... .+.+++..+.++++.+|..
T Consensus 151 ~~~~f~~~~~~ar~~g~l~~t~HaGE~~~~~~v~~~-~~~~-~~RIgHg~~~~~~------p~~~~~l~~~~i~ie~CP~ 222 (305)
T cd00443 151 PLRDFYSYYEYARRLGLLGLTLHCGETGNREELLQA-LLLL-PDRIGHGIFLLKH------PELIYLVKLRNIPIEVCPT 222 (305)
T ss_pred CHHHHHHHHHHHHHcCCcceEEeecCCCChHHHHHH-HHhc-cceeeceEecCCC------HHHHHHHHHcCCEEEECcc
Confidence 5778999999999999 9999997432222222222 2222 3333455432221 2356677777887666665
Q ss_pred CCHH-------HHHHHHHHHHcCCCEEEecCCccccchhhhhhhc
Q 020079 292 MSMD-------AMEEIAKARKAGPNFLNTTIPLCDSCSNIIRMVE 329 (331)
Q Consensus 292 ~~~~-------~~~~i~~~~~~Gi~v~~~~~p~~~~~~~~~~~~~ 329 (331)
|+.. .-.+++++.++|++|+.+|.--..+.+++.+.+.
T Consensus 223 SN~~~~~~~~~~~hP~~~~~~~G~~v~i~TDd~~~~~~~l~~E~~ 267 (305)
T cd00443 223 SNVVLGTVQSYEKHPFMRFFKAGLPVSLSTDDPGIFGTSLSEEYS 267 (305)
T ss_pred hhhhhcCCCChhhChHHHHHHCCCeEEEeCCCCcccCCChHHHHH
Confidence 5421 1246899999999999888544444445555443
No 136
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=96.89 E-value=0.13 Score=47.39 Aligned_cols=108 Identities=11% Similarity=-0.041 Sum_probs=68.9
Q ss_pred CCHHHHHHHHHHHHHcC--CcEEEEc-CCch----hhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCC
Q 020079 212 INDELLIEGFKRCKSLG--ALAMVHA-ENGD----AVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT 284 (331)
Q Consensus 212 ~~~~~l~~~~~~A~~~g--~~v~~H~-e~~~----~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~ 284 (331)
.+.+.+..+++.|++.| +++.+|+ |... ......+.+ ..|.. +-+|+..... -.+.++++++.++
T Consensus 176 ~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al-~lg~~-RIGHG~~~~~------dp~ll~~l~~~~I 247 (345)
T cd01321 176 RPLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDAL-LLNTK-RIGHGFALPK------HPLLMDLVKKKNI 247 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHH-HhCCC-cCccccccCc------CHHHHHHHHHcCC
Confidence 35788999999999999 9999998 5431 112222223 33332 1234432221 1345677888899
Q ss_pred CEEEEeCCCH-------HHHHHHHHHHHcCCCEEEecCCccccch-hhhhh
Q 020079 285 PLYVVHVMSM-------DAMEEIAKARKAGPNFLNTTIPLCDSCS-NIIRM 327 (331)
Q Consensus 285 ~~~i~H~~~~-------~~~~~i~~~~~~Gi~v~~~~~p~~~~~~-~~~~~ 327 (331)
++.+|..|+- -.-.+++.+.++|++|+.+|.--....+ ++...
T Consensus 248 ~lEvCPtSN~~~~~v~~~~~HPl~~ll~~Gv~vtinTDDp~~f~t~~l~~E 298 (345)
T cd01321 248 AIEVCPISNQVLGLVSDLRNHPAAALLARGVPVVISSDDPGFWGAKGLSHD 298 (345)
T ss_pred eEEECcchhhhhccccchhhChHHHHHHCCCeEEEeCCCcchhCCCCchHH
Confidence 9999998762 1224799999999999987764444444 44443
No 137
>PF00449 Urease_alpha: Urease alpha-subunit, N-terminal domain; InterPro: IPR011612 Urease (urea amidohydrolase, 3.5.1.5 from EC) catalyses the hydrolysis of urea to form ammonia and carbamate. The subunit composition of urease from different sources varies [], but each holoenzyme consists of four structural domains []: three structural domains and a nickel-binding catalytic domain common to amidohydrolases []. Urease is unique among nickel metalloenzymes in that it catalyses a hydrolysis rather than a redox reaction. In Helicobacter pylori, the gamma and beta domains are fused and called the alpha subunit (IPR008223 from INTERPRO). The catalytic subunit (called beta or B) has the same organisation as the Klebsiella alpha subunit. Jack bean (Canavalia ensiformis) urease has a fused gamma-beta-alpha organisation (IPR008221 from INTERPRO). The N-terminal domain is a composite domain and plays a major trimer stabilising role by contacting the catalytic domain of the symmetry related alpha-subunit []. ; GO: 0009039 urease activity, 0016151 nickel ion binding, 0019627 urea metabolic process; PDB: 3LA4_A 2UBP_C 3UBP_C 1UBP_C 1S3T_C 1IE7_C 4UBP_C 1E9Y_B 1E9Z_B 3QGA_O ....
Probab=96.54 E-value=0.0067 Score=45.24 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=31.4
Q ss_pred CccEEEECcEEEeCCCceeeeEEEeCCEEEEeeCCC
Q 020079 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI 87 (331)
Q Consensus 52 ~~~~~i~n~~i~~~~~~~~~~v~i~~g~I~~ig~~~ 87 (331)
..|++|+|+-|+|..++.+++|-|+||||+.||+..
T Consensus 65 ~lD~VItNa~IiD~~GI~KADIGIkdG~I~gIGkAG 100 (121)
T PF00449_consen 65 ALDLVITNALIIDYTGIVKADIGIKDGRIVGIGKAG 100 (121)
T ss_dssp C-SEEEEEEEEEETTEEEEEEEEEETTEEEEEE-EB
T ss_pred cccEEEeCcEEEecCCcEEeeEEeeCCEEEEEeccC
Confidence 468999999999998889999999999999999854
No 138
>PTZ00124 adenosine deaminase; Provisional
Probab=96.15 E-value=0.24 Score=45.90 Aligned_cols=107 Identities=17% Similarity=0.086 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEc-CC--chhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeC
Q 020079 215 ELLIEGFKRCKSLGALAMVHA-EN--GDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (331)
Q Consensus 215 ~~l~~~~~~A~~~g~~v~~H~-e~--~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~ 291 (331)
..+..+++.|++.|+++.+|+ |. ........+.+...|... -+|+..... -.+.++.+.+.++++.+|..
T Consensus 206 ~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~v~~ai~~l~~~R-IGHG~~~~~------d~~l~~~l~~~~I~lEvCPt 278 (362)
T PTZ00124 206 KPFKDIFDYVREAGVNLTVHAGEDVTLPNLNTLYSAIQVLKVKR-IGHGIRVAE------SQELIDMVKEKDILLEVCPI 278 (362)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCCCcchhHHHHHHHhCCCc-cccccccCC------CHHHHHHHHHcCCeEEECCc
Confidence 568899999999999999998 53 222222223333333322 233332211 13456778888999999998
Q ss_pred CCH-------HHHHHHHHHHHcCCCEEEecCCccccchhhhhhh
Q 020079 292 MSM-------DAMEEIAKARKAGPNFLNTTIPLCDSCSNIIRMV 328 (331)
Q Consensus 292 ~~~-------~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~~~~~~ 328 (331)
|+- -.-.+++.+.++|++|+.+|.--..+.+.+.+.+
T Consensus 279 SN~~~~~v~~~~~HPi~~l~~~Gv~v~InTDDp~~~~t~l~~Ey 322 (362)
T PTZ00124 279 SNVLLNNAKSMDTHPIRKLYDAGVKVSVNSDDPGMFLTNINDDY 322 (362)
T ss_pred chhhhhcCCchhhHHHHHHHHCCCcEEEeCCCccccCCChhHHH
Confidence 862 1235799999999999998865555555555544
No 139
>PRK08392 hypothetical protein; Provisional
Probab=95.97 E-value=0.79 Score=39.14 Aligned_cols=184 Identities=15% Similarity=0.045 Sum_probs=90.1
Q ss_pred ccccccccCCCCCCCChhhHHHHHHHHHhCCceEEe--cCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhh
Q 020079 108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHI--DFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVV 184 (331)
Q Consensus 108 ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~--d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (331)
||.|+|...+- +..+.++ ..+.|.+.|++.+. |....... .....+....+......+.+.........+ ..
T Consensus 1 ~D~H~HT~~sd-~~~~~~e---~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~~-~~ 75 (215)
T PRK08392 1 MDLHTHTVYSD-GIGSVRD---NIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEIVVLAGIEANITP-NG 75 (215)
T ss_pred CccccCCCCcC-CcCCHHH---HHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCceEEEeEEeeecC-Cc
Confidence 79999987762 4344444 47788999999875 44322111 222222222222111112211111111111 11
Q ss_pred HHHHHHHHHHhCCCeEEEEEecCCCCcC--CHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCccccccc
Q 020079 185 SDEMEVMVKEKGINSFKFFMAYKGSFMI--NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS 262 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~~~~~~~~--~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~ 262 (331)
.+...++.+ ..+.+-. +-|..... ..+-++.+.+.++....-+..|....... .+
T Consensus 76 ~~~~~~~~~--~~D~vI~--SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~---------~~---------- 132 (215)
T PRK08392 76 VDITDDFAK--KLDYVIA--SVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPY---------IG---------- 132 (215)
T ss_pred chhHHHHHh--hCCEEEE--EeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccC---------CC----------
Confidence 223333332 2333311 22211111 12345556666666666788885321000 00
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 263 ~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
.+ ....+++.++.+.+.|..+.+.-....-..+.++.+++.|++++++..-|.-.-+
T Consensus 133 ~~---~~~~~~~i~~~~~~~g~~lEiNt~~~~p~~~~l~~~~~~G~~~~igSDAH~~~~v 189 (215)
T PRK08392 133 YP---SEEELKEILDLAEAYGKAFEISSRYRVPDLEFIRECIKRGIKLTFASDAHRPEDV 189 (215)
T ss_pred Cc---hHHHHHHHHHHHHHhCCEEEEeCCCCCCCHHHHHHHHHcCCEEEEeCCCCChHHC
Confidence 01 1245677888888889887776321112236789999999999988877765443
No 140
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=95.81 E-value=0.3 Score=45.81 Aligned_cols=108 Identities=20% Similarity=0.091 Sum_probs=55.2
Q ss_pred HHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhcc--ceeeccccc---c---ccCCChhhHHHHHH---HHHHhCCCe
Q 020079 131 QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKN--SCMDYGFHM---A---ITKWDEVVSDEMEV---MVKEKGINS 199 (331)
Q Consensus 131 ~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~---~~~~~~~~~~~~~~---~~~~~g~~~ 199 (331)
...+.+.|||++.|+. .......+.++.+++.... ..+.+..+. + ..+........+.+ ..+..|..
T Consensus 136 ~~~~~a~GiTt~~d~~-~~~~~~~~~~~~~~~l~~~~~l~~rv~~~~~~~~vk~~~dg~~~~~~a~~~~~~~~~~~g~~- 213 (404)
T PF07969_consen 136 AMAAGAYGITTVLDYG-GGFASDPEDLEALRELAAEGGLPLRVHLYPRIGGVKIFADGSPGGRTALLEEPYYADEPGAP- 213 (404)
T ss_dssp HHHHCHTCEEEETTCE-CCCGEHHHHHHHHHHHHHCTC--SEEEEEEEEEEEEEESSSSTTHHHHHHHHHHHHHHHTSE-
T ss_pred HHHhcCCCeEEecCCc-cccCCCHHHHHHHHHHhhhcCCCeeeeeecccCceeeccccccccchhhhccccccCccccc-
Confidence 3446779999999987 2222344444444444332 222222111 0 11111111222222 22223331
Q ss_pred EEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHH
Q 020079 200 FKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEG 244 (331)
Q Consensus 200 ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~ 244 (331)
...++....+++.+.++++.|.+.|+++.+|+.....+...
T Consensus 214 ----~~~~g~~~~~~~~l~~~v~~a~~~g~~v~vHa~gd~a~~~~ 254 (404)
T PF07969_consen 214 ----VHISGLPSFDPEELEELVRAAREAGLQVAVHAIGDRAIDEA 254 (404)
T ss_dssp ----EEETC--SSSHHHHHHHHHHHHHCT-EEEEEEESHHHHHHH
T ss_pred ----ccccccccccchhHHHHHHHHHhcCCeeEEEEcCCchHHhH
Confidence 13344556788889999999999999999999665554433
No 141
>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]
Probab=95.68 E-value=0.46 Score=43.48 Aligned_cols=98 Identities=19% Similarity=0.139 Sum_probs=64.8
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEe
Q 020079 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290 (331)
Q Consensus 211 ~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H 290 (331)
....+.+..+++.+++.|+.+..||......+...+.+...+.. .-+|+.... .....+.+....++++.+|+
T Consensus 181 ~~p~~~f~~~f~~~r~~gl~lt~HaGE~~~~~~i~~al~~~~~~-rI~HGi~~~------~d~~L~~~l~~~qI~levCP 253 (345)
T COG1816 181 GYPPELFVSLFKLARDNGLKLTIHAGEAGGPESIRDALDLLGAE-RIGHGIRAI------EDPELLYRLAERQIPLEVCP 253 (345)
T ss_pred cCCHHHHHHHHHHHHHcCceEEEeccccCCcHHHHHHHHHhchh-hhccccccc------cCHHHHHHHHHhCCeeEECC
Confidence 45688999999999999999999985444444444333333321 112221111 11245677777899999999
Q ss_pred CCCH-----H--HHHHHHHHHHcCCCEEEecC
Q 020079 291 VMSM-----D--AMEEIAKARKAGPNFLNTTI 315 (331)
Q Consensus 291 ~~~~-----~--~~~~i~~~~~~Gi~v~~~~~ 315 (331)
.|+- . .--+++++-++|++|+..|.
T Consensus 254 ~SNi~~~~v~~~~~hPf~~~~d~Gv~VsLnTD 285 (345)
T COG1816 254 LSNIQLGVVPSLAKHPFKKLFDAGVKVSLNTD 285 (345)
T ss_pred cchhhcccccchhhCcHHHHHHcCCceEEcCC
Confidence 8871 1 22369999999999998765
No 142
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.22 Score=45.82 Aligned_cols=131 Identities=18% Similarity=0.230 Sum_probs=88.1
Q ss_pred hhhHHHHHHHHHHhCCCeEEEEEec-----C-CCCcCCHHHHHHHHHHHHHcCCcEEE------EcCCchhhHHHHHHHH
Q 020079 182 EVVSDEMEVMVKEKGINSFKFFMAY-----K-GSFMINDELLIEGFKRCKSLGALAMV------HAENGDAVFEGQKRMI 249 (331)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~-----~-~~~~~~~~~l~~~~~~A~~~g~~v~~------H~e~~~~~~~~~~~~~ 249 (331)
...++.++.+. +.|++.+ |++. . ....++.+.++++++.|+++|.++.+ |....+......+.+.
T Consensus 13 ag~l~~l~~ai-~~GADaV--Y~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~ 89 (347)
T COG0826 13 AGNLEDLKAAI-AAGADAV--YIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLV 89 (347)
T ss_pred CCCHHHHHHHH-HcCCCEE--EeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHH
Confidence 34456677776 6787765 3332 1 12357889999999999999997644 3333344456667788
Q ss_pred HcCCCCcccccccCChHHHHHHHHHHHHHHHhcC--CCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchhhhhh
Q 020079 250 ELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN--TPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSNIIRM 327 (331)
Q Consensus 250 ~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g--~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~~~~~ 327 (331)
+.|...-.. ..| -.+.++++.+ .++|+++..+....+.++.+++.|...+ +-|.=++...|.+|
T Consensus 90 e~GvDaviv---~Dp---------g~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rv--Vl~rEls~~ei~~i 155 (347)
T COG0826 90 ELGVDAVIV---ADP---------GLIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRV--VLPRELSLEEIKEI 155 (347)
T ss_pred HcCCCEEEE---cCH---------HHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEE--EeCccCCHHHHHHH
Confidence 888764321 111 2345666666 8999999877777788999999996666 45777777777776
Q ss_pred hc
Q 020079 328 VE 329 (331)
Q Consensus 328 ~~ 329 (331)
.+
T Consensus 156 ~~ 157 (347)
T COG0826 156 KE 157 (347)
T ss_pred HH
Confidence 54
No 143
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=95.38 E-value=0.083 Score=48.34 Aligned_cols=137 Identities=14% Similarity=0.066 Sum_probs=71.8
Q ss_pred ChhhHHHHHHHHHHhC---CCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcc
Q 020079 181 DEVVSDEMEVMVKEKG---INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPE 257 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~g---~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~ 257 (331)
..+..+++.++..+.. +.++.. ... ........+..+++.|++.|+++.+|+.+........+.+...|.. +-
T Consensus 146 ~~~~~~~~~~~~~~~~~~~vvG~dl--~g~-E~~~~~~~~~~~~~~a~~~gl~~t~HaGE~~~~~~~~~ai~~l~~~-RI 221 (331)
T PF00962_consen 146 PDEWAEEIVELASKYPDKGVVGFDL--AGD-EDGGPPLKFAPAFRKAREAGLKLTVHAGETGGPEHIRDAILLLGAD-RI 221 (331)
T ss_dssp THHHHHHHHHHHHHTTTTTEEEEEE--ESS-TTSTTGGGHHHHHHHHHHTT-EEEEEESSSSTHHHHHHHHHTST-S-EE
T ss_pred hHHHHHHHHHHHhhcccceEEEEEe--cCC-cccCchHHHHHHHhhhcccceeecceecccCCcccccchhhhccce-ee
Confidence 4455555555553432 333332 221 1222344588999999999999999984433333333333333332 22
Q ss_pred cccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH-------HHHHHHHHHHHcCCCEEEecCCccccchhhhhh
Q 020079 258 GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM-------DAMEEIAKARKAGPNFLNTTIPLCDSCSNIIRM 327 (331)
Q Consensus 258 ~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~-------~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~~~~~ 327 (331)
+|+...... .+.++++.+.++++.+|..|+- -.--+++++.++|++|+.+|.--....+++...
T Consensus 222 gHG~~~~~~------p~l~~~~~~~~I~iEvcptSN~~~~~~~~~~~hP~~~~~~~gv~v~i~TDd~~~~~~~l~~e 292 (331)
T PF00962_consen 222 GHGVRLIKD------PELLELLAERQIPIEVCPTSNVQLGAVPSYEEHPLRKLLDAGVPVSINTDDPGVFGTTLSDE 292 (331)
T ss_dssp EE-GGGGGS------HHHHHHHHHTT-EEEE-HHHHHHTTSSSTGGG-CHHHHHHTT-EEEE--BSHHHHT-SHHHH
T ss_pred cchhhhhhh------hHHHHHHHHhCCCeeeCCCcCcccceeeecchhHHHHHHHcCCceeccCCCccccCCCcHHH
Confidence 444321111 2345667778899999987631 122478999999999998877555554444443
No 144
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=95.19 E-value=0.13 Score=45.15 Aligned_cols=113 Identities=16% Similarity=0.062 Sum_probs=67.5
Q ss_pred ChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCccccc
Q 020079 181 DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHA 260 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~ 260 (331)
.++..+++++...+.|..+++++....+....+......+++.|.++|+++.+|+.........
T Consensus 83 ~~~~~~~l~~~~~~~g~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~~~---------------- 146 (273)
T PF04909_consen 83 PEDAVEELERALQELGFRGVKLHPDLGGFDPDDPRLDDPIFEAAEELGLPVLIHTGMTGFPDAP---------------- 146 (273)
T ss_dssp HHHHHHHHHHHHHTTTESEEEEESSETTCCTTSGHCHHHHHHHHHHHT-EEEEEESHTHHHHHH----------------
T ss_pred chhHHHHHHHhccccceeeeEecCCCCccccccHHHHHHHHHHHHhhccceeeeccccchhhhh----------------
Confidence 4566778888776788999998765544333343334599999999999999996511111000
Q ss_pred ccCChHHHHHHHHHHHHHHHhc-CCCEEEEeCCCH--HHHHHHHHHHHcCCCEEEecCC
Q 020079 261 LSRPPLLEGEATTRAIRLAEFV-NTPLYVVHVMSM--DAMEEIAKARKAGPNFLNTTIP 316 (331)
Q Consensus 261 ~~~~~~~e~~~i~~~~~l~~~~-g~~~~i~H~~~~--~~~~~i~~~~~~Gi~v~~~~~p 316 (331)
..........+++.++ ++++.++|+... .-.+.++.++ +.-||.++++-
T Consensus 147 ------~~~~~~~~~~~~~~~~P~l~ii~~H~G~~~~~~~~~~~l~~-~~~nvy~d~s~ 198 (273)
T PF04909_consen 147 ------SDPADPEELEELLERFPDLRIILAHLGGPFPWWEEALRLLD-RFPNVYVDLSG 198 (273)
T ss_dssp ------HHHHHHHHHTTHHHHSTTSEEEESGGGTTHHHHHHHHHHHH-HHTTEEEECHS
T ss_pred ------HHHHHHHHHHHHHHHhcCCeEEEecCcccchhHHHHHHHHH-hCCcccccccc
Confidence 0011222233444555 689999998776 2223333333 44588888765
No 145
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=94.38 E-value=0.67 Score=39.00 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=27.8
Q ss_pred cccccccccCCC-CCCCChhhHHHHHHHHHhCCceEEecC
Q 020079 107 GIDPHTHLAMEF-MGSETIDDFFSGQAAALAGGTTMHIDF 145 (331)
Q Consensus 107 ~ID~H~H~~~~~-~~~~~~~~~~~~~~~~l~~GvTtv~d~ 145 (331)
+||.|+|+-... -|..+.++....++.+.+.|||+++.-
T Consensus 1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaT 40 (254)
T COG4464 1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVAT 40 (254)
T ss_pred CccccccccCCCCCCCCcHHHHHHHHHHHHHcCceEEeec
Confidence 599999985431 133455666666788899999999843
No 146
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=93.73 E-value=2.7 Score=37.07 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=21.1
Q ss_pred HhCCCeEEEEEecCCCC---cCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 194 EKGINSFKFFMAYKGSF---MINDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~---~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
+.|.+.+.++....... ..+++.++++.+.++++|+.+.+|+
T Consensus 21 ~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~h~ 65 (273)
T smart00518 21 DIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSVHA 65 (273)
T ss_pred HcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 45555555544322111 2345555555555666666666653
No 147
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=93.72 E-value=2.3 Score=41.02 Aligned_cols=124 Identities=12% Similarity=0.064 Sum_probs=69.9
Q ss_pred HHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhhH-HHHHHHHHHhCCCeEEEEE
Q 020079 127 FFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVS-DEMEVMVKEKGINSFKFFM 204 (331)
Q Consensus 127 ~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~ik~~~ 204 (331)
...-.+.+..+|+..++-+-...+. +....++..++.+......+++..+.. .+.+.. +..+++. +.|++.|.+-
T Consensus 99 v~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~-~t~e~~~~~a~~l~-~~Gad~I~Ik- 175 (499)
T PRK12330 99 VDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPI-HTVEGFVEQAKRLL-DMGADSICIK- 175 (499)
T ss_pred HHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCC-CCHHHHHHHHHHHH-HcCCCEEEeC-
Confidence 3445677889999998744222222 444555556555544333333333322 233333 3344444 6888876431
Q ss_pred ecCCCCcCCHHHHHHHHHHHHHc---CCcEEEEcCCchhhHHHH-HHHHHcCCCC
Q 020079 205 AYKGSFMINDELLIEGFKRCKSL---GALAMVHAENGDAVFEGQ-KRMIELGITG 255 (331)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~e~~~~~~~~~-~~~~~~G~~~ 255 (331)
+. .-..+++....++...++. ++++.+|+.+........ -...+.|...
T Consensus 176 Dt--aGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~ 228 (499)
T PRK12330 176 DM--AALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDV 228 (499)
T ss_pred CC--ccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCE
Confidence 21 2235778888888877665 699999997765544332 2345667643
No 148
>PRK08609 hypothetical protein; Provisional
Probab=93.35 E-value=4.4 Score=40.10 Aligned_cols=52 Identities=23% Similarity=0.118 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCC--HHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 271 ATTRAIRLAEFVNTPLYVVHVMS--MDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 271 ~i~~~~~l~~~~g~~~~i~H~~~--~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
.+++.++.+.+.|+.+.+.-.+. ....+.++.+++.|+++++++.-|.-.-+
T Consensus 480 d~~~i~~~a~~~G~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~igSDAH~~~~l 533 (570)
T PRK08609 480 NIDQLIELAKETNTALELNANPNRLDLSAEHLKKAQEAGVKLAINTDAHHTEML 533 (570)
T ss_pred HHHHHHHHHHHhCCEEEEcCCccccCccHHHHHHHHHcCCEEEEECCCCChhhh
Confidence 35667778788888777764332 12346788899999999988887764433
No 149
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=93.29 E-value=3.2 Score=36.02 Aligned_cols=53 Identities=21% Similarity=0.016 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcCCCEEEEeC--CCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 270 EATTRAIRLAEFVNTPLYVVHV--MSMDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 270 ~~i~~~~~l~~~~g~~~~i~H~--~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
..+.+.++++.+.|..+.+.-. ......+.++.+++.|+.++.++.-|.-...
T Consensus 147 ~~~~~~~~~~~~~g~aleins~~~~~~~~~~~~~~~~e~G~~~~i~tDaH~~~~l 201 (237)
T COG1387 147 EDIEELIELAEKNGKALEINSRPGRLDPNSEILRLARELGVKLAIGTDAHRPGDL 201 (237)
T ss_pred HHHHHHHHHHHHhCcEEeecCCcCccCchHHHHHHHHHhCCeEEeecCcCChhhc
Confidence 4567778888888876554332 1233447888899999999988887765443
No 150
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=93.11 E-value=4.2 Score=38.97 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=71.0
Q ss_pred ChhhH-HHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhhHHH-HHHHHHHhCCCe
Q 020079 123 TIDDF-FSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDE-MEVMVKEKGINS 199 (331)
Q Consensus 123 ~~~~~-~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~ 199 (331)
+++++ +.-.+.+..+|+..++-+-...+. +....++..++.+.......++.... ..+.+...+ .+++. +.|++.
T Consensus 102 ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp-~~t~~y~~~~a~~l~-~~Gad~ 179 (468)
T PRK12581 102 YADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSP-VHTLNYYLSLVKELV-EMGADS 179 (468)
T ss_pred CcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCC-cCcHHHHHHHHHHHH-HcCCCE
Confidence 34553 344677889999999854333322 45566666666654433333333222 222333333 33444 678887
Q ss_pred EEEEEecCCCCcCCHHHHHHHHHHHHHc-CCcEEEEcCCchhhHHHH-HHHHHcCCCC
Q 020079 200 FKFFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHAENGDAVFEGQ-KRMIELGITG 255 (331)
Q Consensus 200 ik~~~~~~~~~~~~~~~l~~~~~~A~~~-g~~v~~H~e~~~~~~~~~-~~~~~~G~~~ 255 (331)
|.+- +. .-..+++.+.++++..++. ++++.+|+.+........ ....+.|...
T Consensus 180 I~Ik-Dt--aG~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAieAGad~ 234 (468)
T PRK12581 180 ICIK-DM--AGILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAGADR 234 (468)
T ss_pred EEEC-CC--CCCcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHHHcCCCE
Confidence 6432 21 2235677887877777654 689999987765543332 2345666543
No 151
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=92.94 E-value=3.3 Score=41.02 Aligned_cols=124 Identities=12% Similarity=0.061 Sum_probs=71.8
Q ss_pred HHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEe
Q 020079 127 FFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMA 205 (331)
Q Consensus 127 ~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~ 205 (331)
++.-.+.+..+|+..++-+-...+. +....++..++.+......+++..+. ..+.+...++.+.+.+.|++.|.+- +
T Consensus 98 v~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp-~~t~e~~~~~ak~l~~~Gad~I~Ik-D 175 (596)
T PRK14042 98 VRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSP-VHTLDNFLELGKKLAEMGCDSIAIK-D 175 (596)
T ss_pred HHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCC-CCCHHHHHHHHHHHHHcCCCEEEeC-C
Confidence 3445677899999999854333322 55566677776665544444444433 2333333333333336888876432 2
Q ss_pred cCCCCcCCHHHHHHHHHHHHH-cCCcEEEEcCCchhhHHHH-HHHHHcCCC
Q 020079 206 YKGSFMINDELLIEGFKRCKS-LGALAMVHAENGDAVFEGQ-KRMIELGIT 254 (331)
Q Consensus 206 ~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~~~~~~-~~~~~~G~~ 254 (331)
. .-..+++...+++...++ .++++++|+++........ ....+.|..
T Consensus 176 t--aG~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAieaGad 224 (596)
T PRK14042 176 M--AGLLTPTVTVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVLAGCN 224 (596)
T ss_pred c--ccCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHHhCCC
Confidence 1 223467777777777654 4899999997766544332 234566654
No 152
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=92.59 E-value=0.04 Score=51.79 Aligned_cols=15 Identities=67% Similarity=0.897 Sum_probs=12.5
Q ss_pred eeecccccccccccC
Q 020079 102 FVMPGGIDPHTHLAM 116 (331)
Q Consensus 102 ~v~PG~ID~H~H~~~ 116 (331)
+|+|||||.|+|+..
T Consensus 1 ~v~PGfiD~H~H~~~ 15 (404)
T PF07969_consen 1 TVMPGFIDSHTHLDS 15 (404)
T ss_dssp EEEE-EEEEEEEHTT
T ss_pred CCccChhHHhhChHH
Confidence 589999999999875
No 153
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=92.34 E-value=1.6 Score=38.51 Aligned_cols=119 Identities=13% Similarity=0.108 Sum_probs=73.0
Q ss_pred hhhHHHHHHHHHHhCCCeEEEEEec--CCCCcCC-HHH---HHHHHHHHHHc-CCcEEEEcCCchhhHHHHHHHHHcCCC
Q 020079 182 EVVSDEMEVMVKEKGINSFKFFMAY--KGSFMIN-DEL---LIEGFKRCKSL-GALAMVHAENGDAVFEGQKRMIELGIT 254 (331)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~--~~~~~~~-~~~---l~~~~~~A~~~-g~~v~~H~e~~~~~~~~~~~~~~~G~~ 254 (331)
++..+..+++. +.|++.|++.... .+....+ +++ +..+++.+++. ++|+.+|..+++..+.+. +.|..
T Consensus 23 ~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi~~al----~~G~~ 97 (257)
T TIGR01496 23 DKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEVARAAL----EAGAD 97 (257)
T ss_pred HHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHHH----HcCCC
Confidence 45566666666 7899999874211 1111223 334 77788888877 999999998887776554 33543
Q ss_pred CcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC-------------------HHHHHHHHHHHHcCC---CEEE
Q 020079 255 GPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS-------------------MDAMEEIAKARKAGP---NFLN 312 (331)
Q Consensus 255 ~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~-------------------~~~~~~i~~~~~~Gi---~v~~ 312 (331)
.-.... . + . .++.+.+++++|+++.+.|... ..-.+.++.+++.|+ ++..
T Consensus 98 iINsis---~---~-~-~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iil 169 (257)
T TIGR01496 98 IINDVS---G---G-Q-DPAMLEVAAEYGVPLVLMHMRGTPRTMQENPHYEDVVEEVLRFLEARAEELVAAGVAAERIIL 169 (257)
T ss_pred EEEECC---C---C-C-CchhHHHHHHcCCcEEEEeCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 211110 0 0 0 2345677889999999998631 012245677889999 4555
Q ss_pred e
Q 020079 313 T 313 (331)
Q Consensus 313 ~ 313 (331)
|
T Consensus 170 D 170 (257)
T TIGR01496 170 D 170 (257)
T ss_pred E
Confidence 5
No 154
>PRK01060 endonuclease IV; Provisional
Probab=92.30 E-value=7.2 Score=34.54 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=34.9
Q ss_pred HHHHHHHhCCCeEEEEEecCCC---CcCCHHHHHHHHHHHHHcCCc---EEEEc
Q 020079 188 MEVMVKEKGINSFKFFMAYKGS---FMINDELLIEGFKRCKSLGAL---AMVHA 235 (331)
Q Consensus 188 ~~~~~~~~g~~~ik~~~~~~~~---~~~~~~~l~~~~~~A~~~g~~---v~~H~ 235 (331)
..+.+++.|.+++.+++..... ...+++.++++.+.++++|+. +.+|.
T Consensus 17 ~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~ 70 (281)
T PRK01060 17 AVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPEDILVHA 70 (281)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCceEEec
Confidence 3334447899999887653221 235778899999999999998 88885
No 155
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=92.20 E-value=7.6 Score=34.89 Aligned_cols=112 Identities=24% Similarity=0.281 Sum_probs=66.8
Q ss_pred hhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccc
Q 020079 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (331)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~ 261 (331)
+...+++++.+.+.|..++++.....+. ..+++.+..+++.|+++|+|+.+|......... .. .. .
T Consensus 112 ~~a~~E~er~v~~~gf~g~~l~p~~~~~-~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~---------~~--~~--~ 177 (293)
T COG2159 112 EAAAEELERRVRELGFVGVKLHPVAQGF-YPDDPRLYPIYEAAEELGVPVVIHTGAGPGGAG---------LE--KG--H 177 (293)
T ss_pred HHHHHHHHHHHHhcCceEEEecccccCC-CCCChHHHHHHHHHHHcCCCEEEEeCCCCCCcc---------cc--cC--C
Confidence 4467888888866788888874433322 235566899999999999999999754322110 00 00 0
Q ss_pred cCChHHHHHHHHHHHHHHHhc-CCCEEEEeCC--CHHHHHHHHHHHHcCCCEEEecCC
Q 020079 262 SRPPLLEGEATTRAIRLAEFV-NTPLYVVHVM--SMDAMEEIAKARKAGPNFLNTTIP 316 (331)
Q Consensus 262 ~~~~~~e~~~i~~~~~l~~~~-g~~~~i~H~~--~~~~~~~i~~~~~~Gi~v~~~~~p 316 (331)
..|...+ +++.+. ..++.+.|+. -.-..+.+..+ ...-||..+++-
T Consensus 178 ~~p~~~~--------~va~~fP~l~IVl~H~G~~~p~~~~a~~~a-~~~~nvy~d~s~ 226 (293)
T COG2159 178 SDPLYLD--------DVARKFPELKIVLGHMGEDYPWELEAIELA-YAHPNVYLDTSG 226 (293)
T ss_pred CCchHHH--------HHHHHCCCCcEEEEecCCCCchhHHHHHHH-HhCCCceeeeec
Confidence 1222222 445555 7899999997 32222233333 345678777663
No 156
>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]
Probab=92.04 E-value=3.8 Score=36.61 Aligned_cols=136 Identities=16% Similarity=0.158 Sum_probs=70.2
Q ss_pred EeCCCCeeecccccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccc
Q 020079 96 LDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM 175 (331)
Q Consensus 96 id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (331)
.|-.-...-|.+.|.|.|+...- ...+.......+...|+.-+...++.. ......++............++.|.
T Consensus 7 ~d~~~~~~~~~~~~~~~~~~~~~----~~~d~s~v~~~a~~~~v~~~~v~gt~~-~d~~~~~~l~~~y~~~v~~t~G~HP 81 (296)
T KOG3020|consen 7 LDDGRNFTNPMLEDIYCHIQAHP----SDSDASQVLERAVQAGVSKLIVTGTSL-KDSKEALELAEKYPGSVYPTFGVHP 81 (296)
T ss_pred hhhhhhhcchhhchhhhccccCC----CCccchHHHHHHHhccceEEEEeCCCc-chHHHHHHHHhhCCCceeeccCcCC
Confidence 34444566788999999998652 112222235567788999888665522 1233333322222122222222221
Q ss_pred c-ccCC-----ChhhHHHHHHHHHHhCC----CeEEE-EEecCCCCcCC----HHHHHHHHHHHHHcCCcEEEEcCC
Q 020079 176 A-ITKW-----DEVVSDEMEVMVKEKGI----NSFKF-FMAYKGSFMIN----DELLIEGFKRCKSLGALAMVHAEN 237 (331)
Q Consensus 176 ~-~~~~-----~~~~~~~~~~~~~~~g~----~~ik~-~~~~~~~~~~~----~~~l~~~~~~A~~~g~~v~~H~e~ 237 (331)
- ...+ ++...+.+..+.+. +. ..|.. .++++.....+ ...+++-+++|.+..+|+.+|+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~k~vAiGEcGLD~~r~~~~~~~~Qk~vFekQl~LA~~~~~Pl~iH~r~ 157 (296)
T KOG3020|consen 82 HFSQEFSDQSRKEKFLDTLLSIIEN-GFLPKVVAIGECGLDYDRLQFSDKEEQKTVFEKQLDLAKRLKLPLFIHCRS 157 (296)
T ss_pred CcccchhhccchhhHHHHHHHHHhh-cccCCeEEeeccccccchhccCChHHHHHHHHHHHHHHHHccCCeeeechh
Confidence 1 1111 12345666666644 21 12221 11222111222 345788999999999999999855
No 157
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=91.95 E-value=6.3 Score=34.90 Aligned_cols=19 Identities=21% Similarity=0.065 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhcCCCEEEE
Q 020079 271 ATTRAIRLAEFVNTPLYVV 289 (331)
Q Consensus 271 ~i~~~~~l~~~~g~~~~i~ 289 (331)
.+.+..+.++..|+++.+.
T Consensus 124 ~l~~l~~~a~~~gi~l~lE 142 (279)
T cd00019 124 ALNELIDKAETKGVVIALE 142 (279)
T ss_pred HHHHHHHhccCCCCEEEEe
Confidence 3444555555556655544
No 158
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=91.84 E-value=6.4 Score=36.60 Aligned_cols=124 Identities=16% Similarity=0.116 Sum_probs=67.1
Q ss_pred HHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEec
Q 020079 128 FSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206 (331)
Q Consensus 128 ~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~ 206 (331)
..-.+.+..+|++.++-+-..++. +....++..++.+.......++..+..-.-+-..+..+++. +.|++.|-+- +.
T Consensus 101 e~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~-~~g~DSIciK-Dm 178 (472)
T COG5016 101 EKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELL-EMGVDSICIK-DM 178 (472)
T ss_pred HHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHH-HcCCCEEEee-cc
Confidence 344577899999999855333333 55666666666665433333333222222233344445555 6788876321 11
Q ss_pred CCCCcCCHHHHHHHHHHH-HHcCCcEEEEcCCchhhHHH-HHHHHHcCCCC
Q 020079 207 KGSFMINDELLIEGFKRC-KSLGALAMVHAENGDAVFEG-QKRMIELGITG 255 (331)
Q Consensus 207 ~~~~~~~~~~l~~~~~~A-~~~g~~v~~H~e~~~~~~~~-~~~~~~~G~~~ 255 (331)
.+ ..++..-.+++... ++.++++.+|+......... .-...+.|...
T Consensus 179 aG--lltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylkAvEAGvD~ 227 (472)
T COG5016 179 AG--LLTPYEAYELVKAIKKELPVPVELHTHATSGMAEMTYLKAVEAGVDG 227 (472)
T ss_pred cc--cCChHHHHHHHHHHHHhcCCeeEEecccccchHHHHHHHHHHhCcch
Confidence 11 23555555555555 45599999998655443332 23345566543
No 159
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=91.74 E-value=15 Score=36.50 Aligned_cols=179 Identities=16% Similarity=0.075 Sum_probs=103.9
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCC--------CCCcHHHHHHHHHHHhccceeeccc----cccccCCChhhHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIP--------INGSLTAGFEAYEKKAKNSCMDYGF----HMAITKWDEVVSDEME 189 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 189 (331)
...+++...+..+-+.|+.++--.++. ...+-++.++.+++..++..+...+ ..+....+++..+...
T Consensus 23 ~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v 102 (596)
T PRK14042 23 MRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFV 102 (596)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHH
Confidence 456666666666666777766533221 1225677888888877765555433 2334445566555555
Q ss_pred HHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEE-------cCCchhhHHHHHHHHHcCCCCcc---cc
Q 020079 190 VMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH-------AENGDAVFEGQKRMIELGITGPE---GH 259 (331)
Q Consensus 190 ~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H-------~e~~~~~~~~~~~~~~~G~~~~~---~~ 259 (331)
+...++|++.+.+|-.. -+.+.++..++.+++.|..+..- ..+.+......+.+.+.|..... ..
T Consensus 103 ~~a~~~Gidv~Rifd~l-----nd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDta 177 (596)
T PRK14042 103 KLAVNNGVDVFRVFDAL-----NDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMA 177 (596)
T ss_pred HHHHHcCCCEEEEcccC-----cchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCcc
Confidence 54447899999887432 25678888999999999866543 12333333344556777764311 11
Q ss_pred cccCChHHHHHHHHHHHHHH-HhcCCCEEE-EeCCCHHHHHHHHHHHHcCCCE
Q 020079 260 ALSRPPLLEGEATTRAIRLA-EFVNTPLYV-VHVMSMDAMEEIAKARKAGPNF 310 (331)
Q Consensus 260 ~~~~~~~~e~~~i~~~~~l~-~~~g~~~~i-~H~~~~~~~~~i~~~~~~Gi~v 310 (331)
+...| ..+.+.+... +..+.++++ +|.+.+-++.-.-.+-++|+.+
T Consensus 178 G~l~P-----~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAieaGad~ 225 (596)
T PRK14042 178 GLLTP-----TVTVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVLAGCNH 225 (596)
T ss_pred cCCCH-----HHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHHhCCCE
Confidence 11122 2333333333 334666554 4666666667677778899875
No 160
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=91.64 E-value=5.5 Score=35.22 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHcCCcEEEEcCC
Q 020079 214 DELLIEGFKRCKSLGALAMVHAEN 237 (331)
Q Consensus 214 ~~~l~~~~~~A~~~g~~v~~H~e~ 237 (331)
.+.+++.++..+++|+.+..+...
T Consensus 123 a~~~r~~~~rL~~~gl~fdl~~~~ 146 (279)
T COG3618 123 APAWRANVERLAKLGLHFDLQVDP 146 (279)
T ss_pred hHHHHHHHHHHHhcCCeEEEEeCh
Confidence 368889999999999999888643
No 161
>PRK07328 histidinol-phosphatase; Provisional
Probab=91.45 E-value=9.6 Score=33.70 Aligned_cols=53 Identities=11% Similarity=-0.038 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCC-------HHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 270 EATTRAIRLAEFVNTPLYVVHVMS-------MDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 270 ~~i~~~~~l~~~~g~~~~i~H~~~-------~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
..+++.++.+.+.|..+.+.-... --..+.++++++.|++++++..-|.-.-+
T Consensus 177 ~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~itigSDAH~~~~v 236 (269)
T PRK07328 177 ELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPSPALLRACRERGIPVVLGSDAHRPEEV 236 (269)
T ss_pred HHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCHHHHHHHHHcCCCEEEeCCCCCHHHH
Confidence 345677788888887776664210 11236788888888888887776665544
No 162
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=90.47 E-value=6.5 Score=37.97 Aligned_cols=96 Identities=14% Similarity=-0.024 Sum_probs=57.9
Q ss_pred CCHHHHHHHHH-HHHHcCCcEEEEc-CCch---hhHH-HHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCC
Q 020079 212 INDELLIEGFK-RCKSLGALAMVHA-ENGD---AVFE-GQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285 (331)
Q Consensus 212 ~~~~~l~~~~~-~A~~~g~~v~~H~-e~~~---~~~~-~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~ 285 (331)
.+...+...+. .+++.|+++.+|+ |... .... ..+.+ ..|.. +-+|+...... ...++++++.++.
T Consensus 303 ~pl~~f~~~~~~~~~~~gl~~t~HAGE~~~~g~~~d~nl~dAI-lLg~~-RIGHG~~l~~~------P~l~~~vke~~I~ 374 (479)
T TIGR01431 303 RSLLDFIDALLGPSDKEKLPYFFHAGETNWQGTTVDENLIDAL-LLNTT-RIGHGFALVKH------PLVLQMLKERNIA 374 (479)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEecCCcCCCCCCchhHHHHHH-HcCCc-cccCcccccCC------HHHHHHHHHhCCe
Confidence 35566666665 4556999999998 4421 1122 22222 23321 12444332211 2356778888999
Q ss_pred EEEEeCCCH-------HHHHHHHHHHHcCCCEEEecC
Q 020079 286 LYVVHVMSM-------DAMEEIAKARKAGPNFLNTTI 315 (331)
Q Consensus 286 ~~i~H~~~~-------~~~~~i~~~~~~Gi~v~~~~~ 315 (331)
+.+|..|+. -.--+++.+.++|++|++++.
T Consensus 375 lEvCP~SN~~l~~v~~~~~HPl~~lla~Gvpv~InSD 411 (479)
T TIGR01431 375 VEVNPISNQVLQLVADLRNHPCAYLFADNYPMVISSD 411 (479)
T ss_pred EEECccchhhhcccCCcccChHHHHHHCCCcEEEeCC
Confidence 999998862 112468999999999997665
No 163
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=90.03 E-value=8.7 Score=36.76 Aligned_cols=122 Identities=16% Similarity=0.076 Sum_probs=65.1
Q ss_pred HHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhhH-HHHHHHHHHhCCCeEEEEEe
Q 020079 128 FSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVS-DEMEVMVKEKGINSFKFFMA 205 (331)
Q Consensus 128 ~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~ik~~~~ 205 (331)
....+.++++|+..++-+....+. +....++..++.+......+++..+. ..+.+.. +..+++. +.|++.|.+- +
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p-~~~~~~~~~~a~~l~-~~Gad~I~i~-D 175 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSP-VHTIDYFVKLAKEMQ-EMGADSICIK-D 175 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCC-CCCHHHHHHHHHHHH-HcCCCEEEEc-C
Confidence 344577889999987743222221 34445555555443322222222221 1233333 3344444 6888876432 2
Q ss_pred cCCCCcCCHHHHHHHHHHHHH-cCCcEEEEcCCchhhHHHH-HHHHHcCCC
Q 020079 206 YKGSFMINDELLIEGFKRCKS-LGALAMVHAENGDAVFEGQ-KRMIELGIT 254 (331)
Q Consensus 206 ~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~~~~~~-~~~~~~G~~ 254 (331)
. .-..+++....++...++ .++++.+|+++........ -...+.|..
T Consensus 176 t--~G~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaGad 224 (448)
T PRK12331 176 M--AGILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAGAD 224 (448)
T ss_pred C--CCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcCCC
Confidence 1 223467777777777654 4899999997765544332 224466654
No 164
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=89.15 E-value=19 Score=33.63 Aligned_cols=55 Identities=16% Similarity=0.098 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCC---------H-------HHHHHHHHHHHcCCCEEEecCCccccchhh
Q 020079 269 GEATTRAIRLAEFVNTPLYVVHVMS---------M-------DAMEEIAKARKAGPNFLNTTIPLCDSCSNI 324 (331)
Q Consensus 269 ~~~i~~~~~l~~~~g~~~~i~H~~~---------~-------~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~~ 324 (331)
++..++.+++++++++.+.+.-.-- . .--+++++++++|+.|-++- |-|..+..|
T Consensus 205 ye~fD~lLeI~~~yDVtlSLGDglRPG~i~Da~D~aQi~El~~lgeL~~RA~e~gVQvMVEG-PGHvPl~~I 275 (431)
T PRK13352 205 YEHFDYLLEILKEYDVTLSLGDGLRPGCIADATDRAQIQELITLGELVKRAREAGVQVMVEG-PGHVPLDQI 275 (431)
T ss_pred HHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEEC-CCCCCHHHH
Confidence 3456778888888887665553210 0 11246778888888887764 655555444
No 165
>PRK07945 hypothetical protein; Provisional
Probab=88.94 E-value=19 Score=33.12 Aligned_cols=50 Identities=12% Similarity=-0.082 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCCEEEEeCCC--HHHHHHHHHHHHcCCCEEEecCCccccc
Q 020079 272 TTRAIRLAEFVNTPLYVVHVMS--MDAMEEIAKARKAGPNFLNTTIPLCDSC 321 (331)
Q Consensus 272 i~~~~~l~~~~g~~~~i~H~~~--~~~~~~i~~~~~~Gi~v~~~~~p~~~~~ 321 (331)
.++.++.+.+.|..+.++-... .-..+.++++++.|++++++..-|.-.-
T Consensus 247 ~~~i~~a~~e~g~~lEINt~~~r~~P~~~il~~a~e~G~~vtigSDAH~p~~ 298 (335)
T PRK07945 247 AEAVFAACREHGTAVEINSRPERRDPPTRLLRLALDAGCLFSIDTDAHAPGQ 298 (335)
T ss_pred HHHHHHHHHHhCCEEEEeCCCCCCCChHHHHHHHHHcCCeEEecCCCCChhh
Confidence 4667788888888877764321 2234688999999999998877776443
No 166
>PRK09358 adenosine deaminase; Provisional
Probab=88.75 E-value=19 Score=32.97 Aligned_cols=34 Identities=9% Similarity=0.006 Sum_probs=22.2
Q ss_pred EEeCCCHH-HHHHHHHHHHcCCCEEEecCCccccchh
Q 020079 288 VVHVMSMD-AMEEIAKARKAGPNFLNTTIPLCDSCSN 323 (331)
Q Consensus 288 i~H~~~~~-~~~~i~~~~~~Gi~v~~~~~p~~~~~~~ 323 (331)
+.|+.... .-+.++.++++|+.|. +||.+|..++
T Consensus 223 i~Hg~~l~~~~~~~~~l~~~gi~v~--~cP~Sn~~l~ 257 (340)
T PRK09358 223 IGHGVRAIEDPALMARLADRRIPLE--VCPTSNVQTG 257 (340)
T ss_pred cchhhhhccCHHHHHHHHHcCCeEE--ECCCcccccc
Confidence 45554321 2346888899997666 7898876554
No 167
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=88.52 E-value=17 Score=32.04 Aligned_cols=48 Identities=4% Similarity=-0.081 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCCeEEEEEecCC--CCcCCHHHHHHHHHHHHHcCCcEEEE
Q 020079 186 DEMEVMVKEKGINSFKFFMAYKG--SFMINDELLIEGFKRCKSLGALAMVH 234 (331)
Q Consensus 186 ~~~~~~~~~~g~~~ik~~~~~~~--~~~~~~~~l~~~~~~A~~~g~~v~~H 234 (331)
+.++.+. +.|.+++.++..... ....+...++++.+.++++|+.+..+
T Consensus 17 ~~l~~~~-~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~ 66 (275)
T PRK09856 17 HAFRDAS-ELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGY 66 (275)
T ss_pred HHHHHHH-HcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEe
Confidence 3444444 788888877543211 11234567888888999999988765
No 168
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=88.23 E-value=9.6 Score=36.63 Aligned_cols=128 Identities=14% Similarity=0.026 Sum_probs=65.6
Q ss_pred ChhhH-HHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeE
Q 020079 123 TIDDF-FSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSF 200 (331)
Q Consensus 123 ~~~~~-~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i 200 (331)
.++++ +.-.+.++++|+..++-+....+. +....++..++.+........+.... ..+.+...++.+.+.+.|++.|
T Consensus 92 ~~dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p-~~t~e~~~~~a~~l~~~Gad~I 170 (467)
T PRK14041 92 YADDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSP-VHTLEYYLEFARELVDMGVDSI 170 (467)
T ss_pred ccchhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCC-CCCHHHHHHHHHHHHHcCCCEE
Confidence 34553 333577889999987733222211 34444444444443222222222221 2233333333333336788876
Q ss_pred EEEEecCCCCcCCHHHHHHHHHHHHH-cCCcEEEEcCCchhhHHHH-HHHHHcCCC
Q 020079 201 KFFMAYKGSFMINDELLIEGFKRCKS-LGALAMVHAENGDAVFEGQ-KRMIELGIT 254 (331)
Q Consensus 201 k~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~~~~~~-~~~~~~G~~ 254 (331)
.+- +.. -..++..+.+++...++ .++++.+|+++........ -...+.|..
T Consensus 171 ~i~-Dt~--G~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaGad 223 (467)
T PRK14041 171 CIK-DMA--GLLTPKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAGAD 223 (467)
T ss_pred EEC-Ccc--CCcCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhCCC
Confidence 432 211 23467777777776654 4899999997765543332 224466654
No 169
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=88.00 E-value=18 Score=32.07 Aligned_cols=110 Identities=13% Similarity=0.016 Sum_probs=57.4
Q ss_pred HHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEec
Q 020079 128 FSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206 (331)
Q Consensus 128 ~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~ 206 (331)
....+.+..+|+..++-.....+. ...+.++..++.+........+... ...+.+...++.+.+.+.|++.+.+- +.
T Consensus 94 ~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~-~~~~~~~~~~~~~~~~~~Ga~~i~l~-DT 171 (275)
T cd07937 94 ELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGS-PVHTLEYYVKLAKELEDMGADSICIK-DM 171 (275)
T ss_pred HHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCC-CCCCHHHHHHHHHHHHHcCCCEEEEc-CC
Confidence 334566778898877643222211 2334444444444322222211111 22333444444444436788877432 22
Q ss_pred CCCCcCCHHHHHHHHHHHHHc-CCcEEEEcCCchhh
Q 020079 207 KGSFMINDELLIEGFKRCKSL-GALAMVHAENGDAV 241 (331)
Q Consensus 207 ~~~~~~~~~~l~~~~~~A~~~-g~~v~~H~e~~~~~ 241 (331)
.-..+++.+..++...++. ++++.+|+.+....
T Consensus 172 --~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~Gl 205 (275)
T cd07937 172 --AGLLTPYAAYELVKALKKEVGLPIHLHTHDTSGL 205 (275)
T ss_pred --CCCCCHHHHHHHHHHHHHhCCCeEEEEecCCCCh
Confidence 2235678888888777654 78899998776543
No 170
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=87.38 E-value=17 Score=32.48 Aligned_cols=68 Identities=16% Similarity=0.175 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHhCCCeEEEEEec-CCC----CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCC
Q 020079 184 VSDEMEVMVKEKGINSFKFFMAY-KGS----FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITG 255 (331)
Q Consensus 184 ~~~~~~~~~~~~g~~~ik~~~~~-~~~----~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~ 255 (331)
..++..+++++.|++.+-+.++. |+. +..+.+.|+++. ++.++|+..|-.+.-..+ ..++..+.|+..
T Consensus 157 ~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~---~~~~iPLVLHGgSG~~~e-~~~~ai~~Gi~K 229 (285)
T PRK07709 157 DPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVR---DFTGVPLVLHGGTGIPTA-DIEKAISLGTSK 229 (285)
T ss_pred CHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHH---HHHCCCEEEeCCCCCCHH-HHHHHHHcCCeE
Confidence 35677778867899988665432 333 345666666664 445999999965432222 234556666643
No 171
>PRK09248 putative hydrolase; Validated
Probab=87.23 E-value=19 Score=31.28 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=24.5
Q ss_pred cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEe
Q 020079 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHI 143 (331)
Q Consensus 107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~ 143 (331)
++|.|+|...+..+..+.+++ .+.+.+.|++++.
T Consensus 4 ~~D~H~HT~~s~~~~~~~~e~---v~~A~~~G~~~i~ 37 (246)
T PRK09248 4 PVDTHTHTIASGHAYSTLHEN---AAEAKQKGLKLFA 37 (246)
T ss_pred ceEeCcCCCCCCCCCCCHHHH---HHHHHHCCCCEEE
Confidence 689999987763233344444 7888999999876
No 172
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=86.78 E-value=11 Score=33.65 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHhCCCeEEEEEec-CCC----CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCC
Q 020079 184 VSDEMEVMVKEKGINSFKFFMAY-KGS----FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGIT 254 (331)
Q Consensus 184 ~~~~~~~~~~~~g~~~ik~~~~~-~~~----~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~ 254 (331)
..++..+++++.|++.+-+.++. |+. +..+.+.++++. ++.++|+..|-.+.-..++ .++..+.|+.
T Consensus 157 ~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~---~~~~vPLVLHGgSG~~~e~-~~~ai~~GI~ 228 (286)
T PRK08610 157 DPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIG---LSTGLPLVLHGGTGIPTKD-IQKAIPFGTA 228 (286)
T ss_pred CHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHH---HHHCCCEEEeCCCCCCHHH-HHHHHHCCCe
Confidence 35667777767899988665432 333 345666666664 3559999999654332222 3445666654
No 173
>KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism]
Probab=86.73 E-value=15 Score=34.27 Aligned_cols=97 Identities=18% Similarity=0.122 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHH-cCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEe
Q 020079 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIE-LGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290 (331)
Q Consensus 212 ~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~-~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H 290 (331)
-+...+..++..+.+.|+.+.+|+.....-....+.+.+ .|. .+-+|+...... ..++.+++..++.+.+|.
T Consensus 224 ~p~~~f~~vl~~~~~~gi~~t~HaGE~~~~~~~v~~~LD~l~~-~RIGHG~~l~~d------p~L~~~~k~~nI~lEiCP 296 (399)
T KOG1097|consen 224 GPLSLFLEVLAKAPAKGIHLTFHAGETNGGASVVKNALDLLGT-ERIGHGYFLTKD------PELINLLKSRNIALEICP 296 (399)
T ss_pred CChhhhHHHHHhhhhcCCcEEEEccccCCChHHHHHHHHhhCC-ccccCceeccCC------HHHHHHHHhcCceEEEcc
Confidence 345677788888888999999998332121122233333 222 122444332211 135678888899999999
Q ss_pred CCCH-------HHHHHHHHHHHcCCCEEEecC
Q 020079 291 VMSM-------DAMEEIAKARKAGPNFLNTTI 315 (331)
Q Consensus 291 ~~~~-------~~~~~i~~~~~~Gi~v~~~~~ 315 (331)
.|+. -.--.++.+.+.|+|++.++.
T Consensus 297 ~SN~vl~~v~d~rnhp~~~~~~~~vP~vI~sD 328 (399)
T KOG1097|consen 297 ISNQVLGLVSDLRNHPVARLLAAGVPVVINSD 328 (399)
T ss_pred chhhheeccccccccHHHHHHhCCCCEEEeCC
Confidence 8862 222478999999999987543
No 174
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=86.40 E-value=12 Score=34.11 Aligned_cols=34 Identities=9% Similarity=0.050 Sum_probs=23.5
Q ss_pred EEeCCCHH-HHHHHHHHHHcCCCEEEecCCccccchh
Q 020079 288 VVHVMSMD-AMEEIAKARKAGPNFLNTTIPLCDSCSN 323 (331)
Q Consensus 288 i~H~~~~~-~~~~i~~~~~~Gi~v~~~~~p~~~~~~~ 323 (331)
+.|+.... .-+.++.++++|+.|. +||.+|..++
T Consensus 213 i~Hg~~l~~~~~~i~~l~~~gi~v~--~cP~Sn~~l~ 247 (324)
T TIGR01430 213 IGHGVRALEDPELLKRLAQENITLE--VCPTSNVALG 247 (324)
T ss_pred cchhhhhccCHHHHHHHHHcCceEE--ECCccccccc
Confidence 56655431 2357888999997666 7898887665
No 175
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=86.22 E-value=3.2 Score=38.86 Aligned_cols=90 Identities=16% Similarity=0.021 Sum_probs=56.1
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEE
Q 020079 211 MINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (331)
Q Consensus 211 ~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~ 289 (331)
.++.+.++++++.|+++|+++.+|+ +..+.+ ++..+.|+...+. +... +.++.+.+.|..+..+
T Consensus 210 ~~~~e~i~~~v~~A~~~g~~v~sH~~~~~~~i----~~a~~~Gv~~~e~-----~~~~------e~~~~~~~~g~~v~~~ 274 (383)
T PRK15446 210 RYAPPNRRAIAALARARGIPLASHDDDTPEHV----AEAHALGVAIAEF-----PTTL------EAARAARALGMSVLMG 274 (383)
T ss_pred hcCHHHHHHHHHHHHHCCCceeecCCCCHHHH----HHHHHcCCceeeC-----CCcH------HHHHHHHHCCCEEEeC
Confidence 4578999999999999999999998 555544 3456667765431 1111 2234555556654322
Q ss_pred eC-----CCHHHHHHHHHHHHcCCCEEEecC
Q 020079 290 HV-----MSMDAMEEIAKARKAGPNFLNTTI 315 (331)
Q Consensus 290 H~-----~~~~~~~~i~~~~~~Gi~v~~~~~ 315 (331)
.- ........++++.+.|+.+..++.
T Consensus 275 ~p~~~r~~~~~~~~~~~~~~~~Gv~~~lgSD 305 (383)
T PRK15446 275 APNVVRGGSHSGNVSALDLAAAGLLDILSSD 305 (383)
T ss_pred CcccccCCcccchHhHHHHHHCCCcEEEEcC
Confidence 11 002234667788899988776543
No 176
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=86.18 E-value=18 Score=32.31 Aligned_cols=66 Identities=24% Similarity=0.314 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCCeEEEEEe-cCCCC----cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCC
Q 020079 185 SDEMEVMVKEKGINSFKFFMA-YKGSF----MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGIT 254 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~-~~~~~----~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~ 254 (331)
.++..+++++.|++.+-+.++ -|+.+ ..+.+.++++.+ ..++|+..|-.+.-.. +..+...+.|+.
T Consensus 157 peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~---~~~vPLVLHGgSG~~~-e~~~kai~~GI~ 227 (286)
T PRK12738 157 PQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIRE---VVDVPLVLHGASDVPD-EFVRRTIELGVT 227 (286)
T ss_pred HHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHH---HhCCCEEEeCCCCCCH-HHHHHHHHcCCe
Confidence 566777786789998876554 24433 345566665544 4589999996443322 223445666654
No 177
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=86.16 E-value=38 Score=33.72 Aligned_cols=181 Identities=16% Similarity=0.159 Sum_probs=100.3
Q ss_pred CCChhhHHHHHHHHHhCCceEEecCcC--------CCCCcHHHHHHHHHHHhccceeecccc----ccccCCChhhHHHH
Q 020079 121 SETIDDFFSGQAAALAGGTTMHIDFVI--------PINGSLTAGFEAYEKKAKNSCMDYGFH----MAITKWDEVVSDEM 188 (331)
Q Consensus 121 ~~~~~~~~~~~~~~l~~GvTtv~d~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 188 (331)
..+.++....++.+-+.|+..+--.++ ....+-++.++..++..++..+..... .+....+++..+..
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~ 102 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERF 102 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHH
Confidence 355667666677777788888753211 112255777777777766544432222 12223344444444
Q ss_pred HHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEE---EEcCCc----hhhHHHHHHHHHcCCCCcc---c
Q 020079 189 EVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM---VHAENG----DAVFEGQKRMIELGITGPE---G 258 (331)
Q Consensus 189 ~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~---~H~e~~----~~~~~~~~~~~~~G~~~~~---~ 258 (331)
.+...+.|++.+.++...+ +.+.+...++.|++.|..+. .+..++ +......+.+.+.|..... .
T Consensus 103 v~~a~~~Gid~~rifd~ln-----d~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt 177 (593)
T PRK14040 103 VERAVKNGMDVFRVFDAMN-----DPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIKDM 177 (593)
T ss_pred HHHHHhcCCCEEEEeeeCC-----cHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 4444378999998875322 45788899999999999642 232222 2233333456666754221 1
Q ss_pred ccccCChHHHHHHHHHHHHHH-HhcCCCEEE-EeCCCHHHHHHHHHHHHcCCCEE
Q 020079 259 HALSRPPLLEGEATTRAIRLA-EFVNTPLYV-VHVMSMDAMEEIAKARKAGPNFL 311 (331)
Q Consensus 259 ~~~~~~~~~e~~~i~~~~~l~-~~~g~~~~i-~H~~~~~~~~~i~~~~~~Gi~v~ 311 (331)
.+...| ..+.+.+... +..+.++++ +|++.+-+++-.-.+-++|+.+.
T Consensus 178 ~G~l~P-----~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~laAieAGa~~v 227 (593)
T PRK14040 178 AGLLKP-----YAAYELVSRIKKRVDVPLHLHCHATTGLSTATLLKAIEAGIDGV 227 (593)
T ss_pred CCCcCH-----HHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHHHHHHcCCCEE
Confidence 111223 2333333333 334566544 47766767777777888998753
No 178
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=85.98 E-value=31 Score=32.56 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=46.2
Q ss_pred HHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCC---CcCCHHHHHHHHHHHHHcCCc---EE
Q 020079 159 AYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS---FMINDELLIEGFKRCKSLGAL---AM 232 (331)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~---~~~~~~~l~~~~~~A~~~g~~---v~ 232 (331)
..........+.++.|.+.... ....+.+.. ..|.+.+.+|...... ...+++...+..+.++++|+. +.
T Consensus 121 ~~~~~~~~~~~~iGaHvSiaGG---~~~a~~~a~-~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~ 196 (413)
T PTZ00372 121 KIAELAEKSNVYIGAHVSASGG---VDNSPINAY-NIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFIL 196 (413)
T ss_pred HHHHHhhccCceEEEEEecccc---HHHHHHHHH-HcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEE
Confidence 3333333445555556554322 223444555 6799999998765432 235788999999999999774 78
Q ss_pred EEc
Q 020079 233 VHA 235 (331)
Q Consensus 233 ~H~ 235 (331)
+|+
T Consensus 197 ~Ha 199 (413)
T PTZ00372 197 PHG 199 (413)
T ss_pred eec
Confidence 896
No 179
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=85.58 E-value=16 Score=30.33 Aligned_cols=90 Identities=20% Similarity=0.187 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHhCCCeEEEEEecCCCCc------CC------HHHHHHHHHHHHHcCCcE-EEEcC---Cc--hhhHHH
Q 020079 183 VVSDEMEVMVKEKGINSFKFFMAYKGSFM------IN------DELLIEGFKRCKSLGALA-MVHAE---NG--DAVFEG 244 (331)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~------~~------~~~l~~~~~~A~~~g~~v-~~H~e---~~--~~~~~~ 244 (331)
..+++++++.++.|............... .. .+.+++.++.|++.|.+. .+|.. .. ...+..
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~ 106 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEEN 106 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHH
Confidence 34667777776778764433322211111 12 578899999999999875 55644 11 111111
Q ss_pred HHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCC
Q 020079 245 QKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292 (331)
Q Consensus 245 ~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~ 292 (331)
.+.+ .+.+.+..+.+++.|+.+.+....
T Consensus 107 ~~~~--------------------~~~l~~l~~~a~~~gv~i~lE~~~ 134 (213)
T PF01261_consen 107 WERL--------------------AENLRELAEIAEEYGVRIALENHP 134 (213)
T ss_dssp HHHH--------------------HHHHHHHHHHHHHHTSEEEEE-SS
T ss_pred HHHH--------------------HHHHHHHHhhhhhhcceEEEeccc
Confidence 1111 345677788888889887666544
No 180
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=85.52 E-value=32 Score=32.16 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=17.0
Q ss_pred HHHHHHHhCCceEEecCcCCCC
Q 020079 129 SGQAAALAGGTTMHIDFVIPIN 150 (331)
Q Consensus 129 ~~~~~~l~~GvTtv~d~~~~~~ 150 (331)
.-++.+++.|.-|+.|....++
T Consensus 81 ~K~~~A~~~GADtiMDLStGgd 102 (423)
T TIGR00190 81 EKALIAIKYGADTVMDLSTGGD 102 (423)
T ss_pred HHHHHHHHcCCCeEeeccCCCC
Confidence 3356789999999999876553
No 181
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=85.52 E-value=25 Score=35.02 Aligned_cols=127 Identities=14% Similarity=0.109 Sum_probs=65.7
Q ss_pred hhh-HHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEE
Q 020079 124 IDD-FFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFK 201 (331)
Q Consensus 124 ~~~-~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik 201 (331)
+++ ...-.+.+..+|+..++-+-...+. +....++..++.+......+++.... ..+.+...++.+.+.+.|++.|.
T Consensus 95 pddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p-~~~~~~~~~~a~~l~~~Gad~i~ 173 (593)
T PRK14040 95 ADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSP-VHTLQTWVDLAKQLEDMGVDSLC 173 (593)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCC-ccCHHHHHHHHHHHHHcCCCEEE
Confidence 444 3444667889999988744222211 34445555555443322222222221 12233333333333367888764
Q ss_pred EEEecCCCCcCCHHHHHHHHHHHHH-cCCcEEEEcCCchhhHHHH-HHHHHcCCC
Q 020079 202 FFMAYKGSFMINDELLIEGFKRCKS-LGALAMVHAENGDAVFEGQ-KRMIELGIT 254 (331)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~~~~~~-~~~~~~G~~ 254 (331)
+- +.. -...++.+..++...++ .++++.+|+++........ -...+.|..
T Consensus 174 i~-Dt~--G~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~laAieAGa~ 225 (593)
T PRK14040 174 IK-DMA--GLLKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLLKAIEAGID 225 (593)
T ss_pred EC-CCC--CCcCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHHHHHHcCCC
Confidence 32 222 23467777777776654 5899999997765543332 223455553
No 182
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=85.42 E-value=6.5 Score=32.67 Aligned_cols=113 Identities=19% Similarity=0.042 Sum_probs=67.1
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEE-c-CCchhhHHHHHHHHHcCCCCcccccccCC-hHHHHH
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH-A-ENGDAVFEGQKRMIELGITGPEGHALSRP-PLLEGE 270 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H-~-e~~~~~~~~~~~~~~~G~~~~~~~~~~~~-~~~e~~ 270 (331)
+.|.+++.+............+.++++.+.++++|+.+..+ . ........ ......+ ......
T Consensus 6 ~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~--------------~~~~~~~~r~~~~~ 71 (213)
T PF01261_consen 6 EAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDE--------------ENGSANDEREEALE 71 (213)
T ss_dssp HTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGT--------------TSTTSSSHHHHHHH
T ss_pred HcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccc--------------cccCcchhhHHHHH
Confidence 67888887765432111101367889999999999997665 2 11110000 0000000 011134
Q ss_pred HHHHHHHHHHhcCCCEEEEeCC---C-------------HHHH-HHHHHHHHcCCCEEEecCCcccc
Q 020079 271 ATTRAIRLAEFVNTPLYVVHVM---S-------------MDAM-EEIAKARKAGPNFLNTTIPLCDS 320 (331)
Q Consensus 271 ~i~~~~~l~~~~g~~~~i~H~~---~-------------~~~~-~~i~~~~~~Gi~v~~~~~p~~~~ 320 (331)
.+.+.+++++..|++..+.|.. . .+.+ +..+.+++.|+.+..++.+....
T Consensus 72 ~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~ 138 (213)
T PF01261_consen 72 YLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFS 138 (213)
T ss_dssp HHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSS
T ss_pred HHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccc
Confidence 5678899999999999999966 1 1222 34555678999999998877764
No 183
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=85.18 E-value=21 Score=31.74 Aligned_cols=66 Identities=21% Similarity=0.330 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhCCCeEEEEEec-CC-----CCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCC
Q 020079 185 SDEMEVMVKEKGINSFKFFMAY-KG-----SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGIT 254 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~~-~~-----~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~ 254 (331)
.++..+++++.|++.+-+.++. |+ .+..+.+.|+++.+.. ++|+..|-.+.-..++ .++..+.|+.
T Consensus 150 pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~---~vPLVlHGgSG~~~e~-~~~ai~~Gi~ 221 (276)
T cd00947 150 PEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV---NVPLVLHGGSGIPDEQ-IRKAIKLGVC 221 (276)
T ss_pred HHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh---CCCEEEeCCCCCCHHH-HHHHHHcCCe
Confidence 5667777867799988665432 33 3345566666665544 8999999654322222 3444556654
No 184
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=85.00 E-value=22 Score=29.97 Aligned_cols=96 Identities=18% Similarity=0.090 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhCCCeEEE-EEecCCCC--cCCHHHHHHHHHHHHHcCCcEEEEc--CCchhhHHHHHHHHHcCCCCcccc
Q 020079 185 SDEMEVMVKEKGINSFKF-FMAYKGSF--MINDELLIEGFKRCKSLGALAMVHA--ENGDAVFEGQKRMIELGITGPEGH 259 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~-~~~~~~~~--~~~~~~l~~~~~~A~~~g~~v~~H~--e~~~~~~~~~~~~~~~G~~~~~~~ 259 (331)
.++++++. +.|++.+.+ .++.+..+ ...++.++++.+. .++++.+|. +++..
T Consensus 15 ~~~i~~l~-~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~---~~~~~DvHLMv~~P~~------------------- 71 (201)
T PF00834_consen 15 EEEIKRLE-EAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKI---TDLPLDVHLMVENPER------------------- 71 (201)
T ss_dssp HHHHHHHH-HTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTT---SSSEEEEEEESSSGGG-------------------
T ss_pred HHHHHHHH-HcCCCEEEEeecccccCCcccCCHHHHHHHhhc---CCCcEEEEeeeccHHH-------------------
Confidence 45555555 788888754 45555443 3456777766443 678999995 44432
Q ss_pred cccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC-HHHHHHHHHHHHcCCCEEEecCCcc
Q 020079 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS-MDAMEEIAKARKAGPNFLNTTIPLC 318 (331)
Q Consensus 260 ~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~-~~~~~~i~~~~~~Gi~v~~~~~p~~ 318 (331)
.++...+.|......|.-+ ....+.++..|++|+.+.+..+|..
T Consensus 72 ---------------~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T 116 (201)
T PF00834_consen 72 ---------------YIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPET 116 (201)
T ss_dssp ---------------HHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS
T ss_pred ---------------HHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCC
Confidence 1123344566666667532 3345678899999999888888864
No 185
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=84.83 E-value=25 Score=34.94 Aligned_cols=127 Identities=17% Similarity=0.123 Sum_probs=65.7
Q ss_pred Chhh-HHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhhH-HHHHHHHHHhCCCe
Q 020079 123 TIDD-FFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVS-DEMEVMVKEKGINS 199 (331)
Q Consensus 123 ~~~~-~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~ 199 (331)
++++ ...-.+.++.+|+..++-+....+. +....++..++.+........+.. ....+.+.. +.++++. +.|++.
T Consensus 88 ypddvv~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~-~p~~~~~~~~~~~~~~~-~~Gad~ 165 (582)
T TIGR01108 88 YADDVVERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTT-SPVHTLETYLDLAEELL-EMGVDS 165 (582)
T ss_pred CchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEecc-CCCCCHHHHHHHHHHHH-HcCCCE
Confidence 3444 3444677889999987743222221 344455555555433222222211 111233333 3344444 678887
Q ss_pred EEEEEecCCCCcCCHHHHHHHHHHHHH-cCCcEEEEcCCchhhHHHH-HHHHHcCCC
Q 020079 200 FKFFMAYKGSFMINDELLIEGFKRCKS-LGALAMVHAENGDAVFEGQ-KRMIELGIT 254 (331)
Q Consensus 200 ik~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~~~~~~-~~~~~~G~~ 254 (331)
|.+- +.. -..++..+..++...++ .++++++|+++........ -...+.|..
T Consensus 166 I~i~-Dt~--G~~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAveaGa~ 219 (582)
T TIGR01108 166 ICIK-DMA--GILTPKAAYELVSALKKRFGLPVHLHSHATTGMAEMALLKAIEAGAD 219 (582)
T ss_pred EEEC-CCC--CCcCHHHHHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCC
Confidence 6432 222 23467777777777654 4899999997765543332 223455543
No 186
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=84.58 E-value=23 Score=31.61 Aligned_cols=67 Identities=18% Similarity=0.226 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhCCCeEEEEEec-CCC----CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCC
Q 020079 185 SDEMEVMVKEKGINSFKFFMAY-KGS----FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITG 255 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~~-~~~----~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~ 255 (331)
.++..+++++.|++.+-+.++. |+. +..+.+.|+++.+ ..++|+..|-.+.-. ++..++..+.|+..
T Consensus 157 peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~---~~~vPLVLHGgSG~~-~e~~~~ai~~Gi~K 228 (284)
T PRK09195 157 PAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQ---WVNIPLVLHGASGLP-TKDIQQTIKLGICK 228 (284)
T ss_pred HHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHH---HhCCCeEEecCCCCC-HHHHHHHHHcCCeE
Confidence 4667777767899988665442 333 3566777777755 348999999644322 22344556666643
No 187
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=84.31 E-value=35 Score=36.86 Aligned_cols=130 Identities=13% Similarity=0.072 Sum_probs=72.1
Q ss_pred ChhhH-HHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeecccccccc-----CCChhhHHHHHHHHHHh
Q 020079 123 TIDDF-FSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAIT-----KWDEVVSDEMEVMVKEK 195 (331)
Q Consensus 123 ~~~~~-~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 195 (331)
+++++ +.-.+.+.++|+..++-+-...+. +....++..++.+.......++.+... ..+.+...++.+.+.+.
T Consensus 622 ypd~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~ 701 (1143)
T TIGR01235 622 YPDNVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKA 701 (1143)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHc
Confidence 44444 334567789999999854333332 566667777776655444444443221 12233333333333367
Q ss_pred CCCeEEEEEecCCCCcCCHHHHHHHHHHHHH-cCCcEEEEcCCchhhHHHH-HHHHHcCCCC
Q 020079 196 GINSFKFFMAYKGSFMINDELLIEGFKRCKS-LGALAMVHAENGDAVFEGQ-KRMIELGITG 255 (331)
Q Consensus 196 g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~~~~~~-~~~~~~G~~~ 255 (331)
|++.|.+- +. .-...+.....++...++ .++++++|+++........ -...+.|...
T Consensus 702 Gad~I~ik-Dt--~Gll~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~Gla~an~laA~eaGad~ 760 (1143)
T TIGR01235 702 GAHILGIK-DM--AGLLKPAAAKLLIKALREKTDLPIHFHTHDTSGIAVASMLAAVEAGVDV 760 (1143)
T ss_pred CCCEEEEC-CC--cCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCCcHHHHHHHHHHhCCCE
Confidence 88876431 11 223467777777776654 4899999997765543332 2234566543
No 188
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=84.11 E-value=26 Score=31.38 Aligned_cols=66 Identities=26% Similarity=0.317 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhCCCeEEEEEec-CCC----CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCC
Q 020079 185 SDEMEVMVKEKGINSFKFFMAY-KGS----FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGIT 254 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~~-~~~----~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~ 254 (331)
.++..+++++.|++.+-+.++. |+. +..+.+.|+++-+ ..++|+..|-.+.-.. +..+...+.|+.
T Consensus 157 peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~---~~~iPLVlHGgSG~~~-e~~~kai~~Gi~ 227 (284)
T PRK12737 157 PDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIRE---KVSIPLVLHGASGVPD-EDVKKAISLGIC 227 (284)
T ss_pred HHHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHH---HhCCCEEEeCCCCCCH-HHHHHHHHCCCe
Confidence 4677778877899988665443 433 3456666766644 4489999996443222 223445666664
No 189
>PRK08005 epimerase; Validated
Probab=83.50 E-value=27 Score=29.72 Aligned_cols=47 Identities=4% Similarity=-0.013 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCCeEEE-EEecCCCC--cCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 185 SDEMEVMVKEKGINSFKF-FMAYKGSF--MINDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~-~~~~~~~~--~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
.++++++. +.|++.+.+ .++.+..+ .+.++.++++.+. ...++.+|.
T Consensus 16 ~~el~~l~-~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~---t~~~~DvHL 65 (210)
T PRK08005 16 AEALTALH-DAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQ---TRHPLSFHL 65 (210)
T ss_pred HHHHHHHH-HCCCCEEEEeccCCCcCCccccCHHHHHHHHhc---CCCCeEEEe
Confidence 35555555 678887754 33444433 3456777766543 478999995
No 190
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=83.02 E-value=16 Score=32.57 Aligned_cols=68 Identities=12% Similarity=0.119 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHhCCCeEEEEEec-CCCC---cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCC
Q 020079 184 VSDEMEVMVKEKGINSFKFFMAY-KGSF---MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITG 255 (331)
Q Consensus 184 ~~~~~~~~~~~~g~~~ik~~~~~-~~~~---~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~ 255 (331)
..++..+++++.|++.+.+.++. |+.+ ..+.+.++++.+ ..++|+..|-.+.-..++ .+...+.|+..
T Consensus 154 ~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~---~~~vPLVlHGgSG~~~e~-~~~ai~~Gi~K 225 (283)
T PRK07998 154 EPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAE---VSPVPLVIHGGSGIPPEI-LRSFVNYKVAK 225 (283)
T ss_pred CHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHh---hCCCCEEEeCCCCCCHHH-HHHHHHcCCcE
Confidence 34666778867899988765432 4433 344556665544 459999999654332222 34456666643
No 191
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=83.02 E-value=29 Score=31.03 Aligned_cols=66 Identities=23% Similarity=0.301 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhCCCeEEEEEec-CCC----CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCC
Q 020079 185 SDEMEVMVKEKGINSFKFFMAY-KGS----FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGIT 254 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~~-~~~----~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~ 254 (331)
.++..+++++.|++.+-+.++. |+. +..+.+.|+++.+ +.++|+..|-.+.-.. +..++..+.|+.
T Consensus 155 peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~---~~~iPLVlHGgSG~~~-e~~~~ai~~Gi~ 225 (282)
T TIGR01858 155 PQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIRE---VVDVPLVLHGASDVPD-EDVRRTIELGIC 225 (282)
T ss_pred HHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHH---HhCCCeEEecCCCCCH-HHHHHHHHcCCe
Confidence 4667777777899988665543 433 3456677776654 4589999996543322 223455666654
No 192
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=82.87 E-value=24 Score=30.51 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=26.0
Q ss_pred hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEE
Q 020079 195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV 233 (331)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~ 233 (331)
.-++.+|+. +......+.+.+++.++.|+++|+++..
T Consensus 23 ~yID~lKfg--~Gt~~l~~~~~l~eki~la~~~~V~v~~ 59 (237)
T TIGR03849 23 DYITFVKFG--WGTSALIDRDIVKEKIEMYKDYGIKVYP 59 (237)
T ss_pred hheeeEEec--CceEeeccHHHHHHHHHHHHHcCCeEeC
Confidence 345777763 3333445668899999999999998753
No 193
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=82.62 E-value=30 Score=34.44 Aligned_cols=126 Identities=13% Similarity=0.049 Sum_probs=66.0
Q ss_pred hhhH-HHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEE
Q 020079 124 IDDF-FSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFK 201 (331)
Q Consensus 124 ~~~~-~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik 201 (331)
+++. ....+.+.++|+..++-+....+. +....++..++.+........+........+...+.++++. +.|++.|.
T Consensus 94 pd~vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~-~~Gad~I~ 172 (592)
T PRK09282 94 PDDVVEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELE-EMGCDSIC 172 (592)
T ss_pred cchhhHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH-HcCCCEEE
Confidence 4443 344667888999988744322222 44455555555543322222222221112223344444554 67888764
Q ss_pred EEEecCCCCcCCHHHHHHHHHHHHH-cCCcEEEEcCCchhhHHHH-HHHHHcCC
Q 020079 202 FFMAYKGSFMINDELLIEGFKRCKS-LGALAMVHAENGDAVFEGQ-KRMIELGI 253 (331)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~~~~~~-~~~~~~G~ 253 (331)
+- +.. -...++.+.++++..++ .++++++|+++........ -...+.|.
T Consensus 173 i~-Dt~--G~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAv~aGa 223 (592)
T PRK09282 173 IK-DMA--GLLTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAVEAGV 223 (592)
T ss_pred EC-CcC--CCcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHHHHHHhCC
Confidence 32 222 23467788888777655 4899999987765543322 22345554
No 194
>PRK12999 pyruvate carboxylase; Reviewed
Probab=82.22 E-value=32 Score=37.24 Aligned_cols=128 Identities=13% Similarity=0.067 Sum_probs=66.8
Q ss_pred hhhHHHH-HHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccc-----cCCChhhHHHHHHHHHHhC
Q 020079 124 IDDFFSG-QAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAI-----TKWDEVVSDEMEVMVKEKG 196 (331)
Q Consensus 124 ~~~~~~~-~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g 196 (331)
+++.... .+.+.++|+..++-+-...+. +....++..++.+......+++.+.. ...+.+...++.+.+.+.|
T Consensus 625 p~~v~~~~i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~G 704 (1146)
T PRK12999 625 PDNVVRAFVREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAG 704 (1146)
T ss_pred CchHHHHHHHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 4444443 677889999998844222211 34444455554443223333333111 1123333333333333678
Q ss_pred CCeEEEEEecCCCCcCCHHHHHHHHHHHHH-cCCcEEEEcCCchhhHHHH-HHHHHcCCC
Q 020079 197 INSFKFFMAYKGSFMINDELLIEGFKRCKS-LGALAMVHAENGDAVFEGQ-KRMIELGIT 254 (331)
Q Consensus 197 ~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~~~~~~-~~~~~~G~~ 254 (331)
++.|.+- +. .-..+++....++...++ .++++++|+++........ -...+.|..
T Consensus 705 a~~i~ik-Dt--~G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~an~laA~~aGad 761 (1146)
T PRK12999 705 AHILAIK-DM--AGLLKPAAAYELVSALKEEVDLPIHLHTHDTSGNGLATYLAAAEAGVD 761 (1146)
T ss_pred CCEEEEC-Cc--cCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHhCCC
Confidence 8876431 11 223567777777776654 4899999997766544332 224455654
No 195
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=81.37 E-value=31 Score=31.21 Aligned_cols=115 Identities=13% Similarity=0.037 Sum_probs=64.2
Q ss_pred HHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc---CCcEEEEc--CCchhhHHHHHHHHHcCCCCccccccc
Q 020079 188 MEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL---GALAMVHA--ENGDAVFEGQKRMIELGITGPEGHALS 262 (331)
Q Consensus 188 ~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~--e~~~~~~~~~~~~~~~G~~~~~~~~~~ 262 (331)
++.+. ..|++++-+..+.......+.++-+++++.+.+. .+++.+|+ .+..+.-+..+...+.|..+--.....
T Consensus 35 v~~li-~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~ 113 (309)
T cd00952 35 VERLI-AAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPM 113 (309)
T ss_pred HHHHH-HcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCc
Confidence 33344 5788887544333344567788777777655443 47888886 345555455566777787543211110
Q ss_pred -CChHHHHHHHHHHHHHHHhc-CCCEEEEeCCCH----HHHHHHHHHH
Q 020079 263 -RPPLLEGEATTRAIRLAEFV-NTPLYVVHVMSM----DAMEEIAKAR 304 (331)
Q Consensus 263 -~~~~~e~~~i~~~~~l~~~~-g~~~~i~H~~~~----~~~~~i~~~~ 304 (331)
.+.. +...++-+-.++... +.++.+-|++.. -..+.++++.
T Consensus 114 y~~~~-~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~ 160 (309)
T cd00952 114 WLPLD-VDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELA 160 (309)
T ss_pred CCCCC-HHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHh
Confidence 1111 222333344555666 589888888742 2345566665
No 196
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=81.31 E-value=29 Score=32.27 Aligned_cols=50 Identities=14% Similarity=0.105 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCCE-EEEeCCCHHHHH---HHHHHHHcCCCE--EEecCCccc
Q 020079 270 EATTRAIRLAEFVNTPL-YVVHVMSMDAME---EIAKARKAGPNF--LNTTIPLCD 319 (331)
Q Consensus 270 ~~i~~~~~l~~~~g~~~-~i~H~~~~~~~~---~i~~~~~~Gi~v--~~~~~p~~~ 319 (331)
..+++..++..+.|.++ +++|.......+ ...+..++|..+ ...++|++.
T Consensus 200 ~~~~~i~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~i~~~~~~~~~ 255 (387)
T cd01308 200 RALSPIFELIEETEIPITQFLPTHINRTAPLFEQGVEFAKMGGTIDLTSSIDPQFR 255 (387)
T ss_pred HHHHHHHHHHHhcCCCcceeECCcccCCHHHHHHHHHHHHcCCcEEEECCCCcccc
Confidence 45666767777778776 777766543323 233344455544 345677655
No 197
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=81.27 E-value=37 Score=29.74 Aligned_cols=31 Identities=13% Similarity=0.121 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEcCCchhhHH
Q 020079 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFE 243 (331)
Q Consensus 213 ~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~ 243 (331)
..+.++.+.+.+++.|+++..=..+...++.
T Consensus 64 G~~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~ 94 (250)
T PRK13397 64 GLQGIRYLHEVCQEFGLLSVSEIMSERQLEE 94 (250)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeeCCHHHHHH
Confidence 4567777777777778777665544444433
No 198
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=81.23 E-value=10 Score=33.23 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEcCCchh
Q 020079 213 NDELLIEGFKRCKSLGALAMVHAENGDA 240 (331)
Q Consensus 213 ~~~~l~~~~~~A~~~g~~v~~H~e~~~~ 240 (331)
+.+.+..+++.|++.|.+++.|.|+.+.
T Consensus 143 ~n~vl~~a~elA~dvdc~vqLHtes~~~ 170 (285)
T COG1831 143 SNEVLEYAMELAKDVDCAVQLHTESLDE 170 (285)
T ss_pred HHHHHHHHHHHhhcCCCcEEEecCCCCh
Confidence 3466788999999999999999987543
No 199
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=81.20 E-value=30 Score=30.94 Aligned_cols=110 Identities=14% Similarity=0.050 Sum_probs=60.7
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc---CCcEEEEcC--CchhhHHHHHHHHHcCCCCccccccc-CChHH
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL---GALAMVHAE--NGDAVFEGQKRMIELGITGPEGHALS-RPPLL 267 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~e--~~~~~~~~~~~~~~~G~~~~~~~~~~-~~~~~ 267 (331)
+.|++++-+..+.......+.++-+++++.+.+. .+++.+|+. +..+..+..+.+.+.|..+--..+.. .+. .
T Consensus 33 ~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~-~ 111 (292)
T PRK03170 33 ANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYNKP-T 111 (292)
T ss_pred HcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCCCC-C
Confidence 5788877543332334556777777776655553 478888863 44444444466777777543211111 111 1
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCH----HHHHHHHHHH
Q 020079 268 EGEATTRAIRLAEFVNTPLYVVHVMSM----DAMEEIAKAR 304 (331)
Q Consensus 268 e~~~i~~~~~l~~~~g~~~~i~H~~~~----~~~~~i~~~~ 304 (331)
+...++-.-+++...+.++.+-+++.. -..+.++++.
T Consensus 112 ~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~ 152 (292)
T PRK03170 112 QEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLA 152 (292)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHH
Confidence 223344455566666788888887631 1345666664
No 200
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=81.15 E-value=38 Score=29.87 Aligned_cols=44 Identities=9% Similarity=0.021 Sum_probs=29.9
Q ss_pred HHHHHhCCCeEEEEEecC----CCCcCCHHHHHHHHHHHHHcCCcEEE
Q 020079 190 VMVKEKGINSFKFFMAYK----GSFMINDELLIEGFKRCKSLGALAMV 233 (331)
Q Consensus 190 ~~~~~~g~~~ik~~~~~~----~~~~~~~~~l~~~~~~A~~~g~~v~~ 233 (331)
+.+++.|.+++.+..... .....+++.++++.+.++++|+.+..
T Consensus 28 ~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 28 AIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNS 75 (283)
T ss_pred HHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeE
Confidence 333378998887754321 11234678888999999999998754
No 201
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=81.02 E-value=32 Score=30.45 Aligned_cols=112 Identities=13% Similarity=0.057 Sum_probs=60.5
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc---CCcEEEEcC--CchhhHHHHHHHHHcCCCCcccccccCChHHH
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL---GALAMVHAE--NGDAVFEGQKRMIELGITGPEGHALSRPPLLE 268 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~e--~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e 268 (331)
+.|++++-+..+.......+.++-+++++.+.+. .+++.+|+. +..+..+..+...+.|..+--..+.......+
T Consensus 29 ~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~ 108 (281)
T cd00408 29 EAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNKPSQ 108 (281)
T ss_pred HcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCH
Confidence 5688877443333334556777777777666543 478888863 33334444456677777543221111101112
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCH----HHHHHHHHHHH
Q 020079 269 GEATTRAIRLAEFVNTPLYVVHVMSM----DAMEEIAKARK 305 (331)
Q Consensus 269 ~~~i~~~~~l~~~~g~~~~i~H~~~~----~~~~~i~~~~~ 305 (331)
...++-...++...+.++.+-+.+.. -..+.++++.+
T Consensus 109 ~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~ 149 (281)
T cd00408 109 EGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE 149 (281)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc
Confidence 23344455566666788888877642 12455666554
No 202
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=80.84 E-value=31 Score=31.18 Aligned_cols=50 Identities=20% Similarity=0.186 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhCCCeEEEEEec-CCC------CcCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079 185 SDEMEVMVKEKGINSFKFFMAY-KGS------FMINDELLIEGFKRCKSLGALAMVHAEN 237 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~~-~~~------~~~~~~~l~~~~~~A~~~g~~v~~H~e~ 237 (331)
.++..+++++.|++.+-+.++. |+. +..+.+.|+++ .++.++|+.+|-.+
T Consensus 157 PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I---~~~~~iPLVLHGgS 213 (307)
T PRK05835 157 PKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEV---KRLTNIPLVLHGAS 213 (307)
T ss_pred HHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHH---HHHhCCCEEEeCCC
Confidence 4667778867899987665432 433 33556666665 44559999999543
No 203
>PRK09230 cytosine deaminase; Provisional
Probab=80.76 E-value=14 Score=35.12 Aligned_cols=69 Identities=6% Similarity=-0.106 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCC---cEEEEcCCch-----hhHHHHHHHHHcCC
Q 020079 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGA---LAMVHAENGD-----AVFEGQKRMIELGI 253 (331)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~---~v~~H~e~~~-----~~~~~~~~~~~~G~ 253 (331)
.+.++.+.+++++.|. .+.+..+... .......+..++..++.|+ .+..|+..-. ......+.+.+.|.
T Consensus 194 ~e~l~~~~~~A~~~g~-~~~~H~~E~~--~~~~~~~~~~~~~~~~~gl~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv 270 (426)
T PRK09230 194 VESLHKAFALAQKYDR-LIDVHCDEID--DEQSRFVETVAALAHREGMGARVTASHTTAMHSYNGAYTSRLFRLLKMSGI 270 (426)
T ss_pred HHHHHHHHHHHHHhCC-CcEEEECCCC--CcchHHHHHHHHHHHHhCCCCCEEEEecCchhcCCHHHHHHHHHHHHHcCC
Confidence 3456666666645554 3444443221 1112235567777777775 4677864331 12233455666664
No 204
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=80.54 E-value=37 Score=29.31 Aligned_cols=32 Identities=16% Similarity=0.021 Sum_probs=22.3
Q ss_pred cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEe
Q 020079 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHI 143 (331)
Q Consensus 107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~ 143 (331)
|+|.|+|.... +.. .+....+.|.+-|...+.
T Consensus 3 ~~DlHvHt~~d--~~~---~~~e~i~~A~~~Gl~~i~ 34 (237)
T PRK00912 3 FYDLNVHAVPD--GYD---TVLRLISEASHLGYSGIA 34 (237)
T ss_pred ceEeccCCCCC--Ccc---hHHHHHHHHHHCCCCEEE
Confidence 68999998422 333 344447888899998776
No 205
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=80.38 E-value=32 Score=32.03 Aligned_cols=58 Identities=10% Similarity=0.146 Sum_probs=36.7
Q ss_pred CChHHHHHHHHHHHHHHHhcCCC--EEEEeCC-CHHHHHHHHHH-HHcCCCEEEecCCccccc
Q 020079 263 RPPLLEGEATTRAIRLAEFVNTP--LYVVHVM-SMDAMEEIAKA-RKAGPNFLNTTIPLCDSC 321 (331)
Q Consensus 263 ~~~~~e~~~i~~~~~l~~~~g~~--~~i~H~~-~~~~~~~i~~~-~~~Gi~v~~~~~p~~~~~ 321 (331)
.+...+...+.+..+.+...+.+ .++.|++ +..+++.++++ ++.|+.+.. +|++|...
T Consensus 167 ~~~~~~l~~~~~~a~~~~~~~g~~~~i~vH~~~~~~~l~~v~~~l~~~Gv~~~~-~~~~H~~~ 228 (388)
T PRK10657 167 QPTVEELARLAAEARVGGLLSGKAGIVHVHMGDGKKGLQPLFELLENTDIPISQ-FLPTHVNR 228 (388)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCchHHHHHHHHHHHhcCCCcce-eeCcccCC
Confidence 34444444455555544444432 6788887 46777777544 688988885 88888664
No 206
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=80.21 E-value=41 Score=29.66 Aligned_cols=45 Identities=9% Similarity=-0.025 Sum_probs=30.5
Q ss_pred HHHHHHHhCCCeEEEEEecCC----CCcCCHHHHHHHHHHHHHcCCcEE
Q 020079 188 MEVMVKEKGINSFKFFMAYKG----SFMINDELLIEGFKRCKSLGALAM 232 (331)
Q Consensus 188 ~~~~~~~~g~~~ik~~~~~~~----~~~~~~~~l~~~~~~A~~~g~~v~ 232 (331)
.-+.+.+.|.+++.+.+.... ....+.+.+.++.+..+++|+.+.
T Consensus 21 ~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 21 RLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred HHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCce
Confidence 334444789998877654321 123467788888889999999875
No 207
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=80.10 E-value=53 Score=30.82 Aligned_cols=178 Identities=19% Similarity=0.142 Sum_probs=94.8
Q ss_pred hhhHHHHHHHHHhCCceEEecCcCCC--------CCcHHHHHHHHHHHhccceeec---ccc-ccccCCChhhHHHHHHH
Q 020079 124 IDDFFSGQAAALAGGTTMHIDFVIPI--------NGSLTAGFEAYEKKAKNSCMDY---GFH-MAITKWDEVVSDEMEVM 191 (331)
Q Consensus 124 ~~~~~~~~~~~l~~GvTtv~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~ 191 (331)
.+++.-.+..+=+.|+.++--.++.. +.+-++.++..++.-++..+.. +.. .+.....++..+...+.
T Consensus 27 t~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv~k 106 (472)
T COG5016 27 TEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFVEK 106 (472)
T ss_pred HHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHHHH
Confidence 44554445556678888876443211 2245666666666655533321 111 22333445554444444
Q ss_pred HHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEE-cCCchh---hHH---HHHHHHHcCCCCccc---ccc
Q 020079 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH-AENGDA---VFE---GQKRMIELGITGPEG---HAL 261 (331)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H-~e~~~~---~~~---~~~~~~~~G~~~~~~---~~~ 261 (331)
.-++|.+.|.+|-..+ +..-++..++.++++|.-+.+- +.+.+. ++. ....+.+.|+...-. .+.
T Consensus 107 a~~nGidvfRiFDAlN-----D~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciKDmaGl 181 (472)
T COG5016 107 AAENGIDVFRIFDALN-----DVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIKDMAGL 181 (472)
T ss_pred HHhcCCcEEEechhcc-----chhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEeeccccc
Confidence 4378999998875432 6678999999999999955443 222211 111 224466777643210 011
Q ss_pred cCChHHHHHHHHHHHHHHHhcCCCEEE-EeCCCHHHHHHHHHHHHcCCCE
Q 020079 262 SRPPLLEGEATTRAIRLAEFVNTPLYV-VHVMSMDAMEEIAKARKAGPNF 310 (331)
Q Consensus 262 ~~~~~~e~~~i~~~~~l~~~~g~~~~i-~H~~~~~~~~~i~~~~~~Gi~v 310 (331)
..| ..+.+-.-.+-+..+.++++ +|++++-+..-.-++-++|+.+
T Consensus 182 ltP----~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylkAvEAGvD~ 227 (472)
T COG5016 182 LTP----YEAYELVKAIKKELPVPVELHTHATSGMAEMTYLKAVEAGVDG 227 (472)
T ss_pred CCh----HHHHHHHHHHHHhcCCeeEEecccccchHHHHHHHHHHhCcch
Confidence 112 22233333444555776544 4776655544555667788764
No 208
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=80.09 E-value=44 Score=29.96 Aligned_cols=117 Identities=16% Similarity=0.079 Sum_probs=61.7
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHH---cCCcEEEEcC--CchhhHHHHHHHHHcCCCCcccccc-cCChHH
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKS---LGALAMVHAE--NGDAVFEGQKRMIELGITGPEGHAL-SRPPLL 267 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~---~g~~v~~H~e--~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~ 267 (331)
+.|++++-+.-+.......+.++-.++++.+.+ ...+|.+|+. +..+.-+..+...+.|..+--.... -.++ .
T Consensus 32 ~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~-~ 110 (294)
T TIGR02313 32 EGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYYNKP-N 110 (294)
T ss_pred HcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccCCCC-C
Confidence 578887644333333445677776666665433 2478888863 3333333445567777654221111 0111 1
Q ss_pred HHHHHHHHHHHHHhc-CCCEEEEeCCCHH----HHHHHHHHHHcCCCEE
Q 020079 268 EGEATTRAIRLAEFV-NTPLYVVHVMSMD----AMEEIAKARKAGPNFL 311 (331)
Q Consensus 268 e~~~i~~~~~l~~~~-g~~~~i~H~~~~~----~~~~i~~~~~~Gi~v~ 311 (331)
+...++-+..++... +.++.+-+++... ..+.+.++.++--||.
T Consensus 111 ~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~ 159 (294)
T TIGR02313 111 QEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDCPNIV 159 (294)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHhhCCCEE
Confidence 223344455666667 7888888876421 2456666654333443
No 209
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=79.79 E-value=31 Score=30.60 Aligned_cols=111 Identities=14% Similarity=0.066 Sum_probs=55.6
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc---CCcEEEEcC--CchhhHHHHHHHHHcCCCCccccccc-CChHH
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL---GALAMVHAE--NGDAVFEGQKRMIELGITGPEGHALS-RPPLL 267 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~e--~~~~~~~~~~~~~~~G~~~~~~~~~~-~~~~~ 267 (331)
+.|++++-+..+.......+.++.+++++.+.+. .+++.+++. +..+..+..+...+.|..+--..... .+. .
T Consensus 32 ~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~-~ 110 (284)
T cd00950 32 ENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYNKP-S 110 (284)
T ss_pred HcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccccCCC-C
Confidence 5677776433222223456777777766655554 467777753 34444444455667776532211111 111 1
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCH----HHHHHHHHHHH
Q 020079 268 EGEATTRAIRLAEFVNTPLYVVHVMSM----DAMEEIAKARK 305 (331)
Q Consensus 268 e~~~i~~~~~l~~~~g~~~~i~H~~~~----~~~~~i~~~~~ 305 (331)
+...++-.-+++...+.++.+-+.+.. -+.+.++++.+
T Consensus 111 ~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~ 152 (284)
T cd00950 111 QEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAE 152 (284)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhc
Confidence 222333344455556778777776531 12345555544
No 210
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=79.27 E-value=27 Score=31.26 Aligned_cols=66 Identities=24% Similarity=0.299 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhCCCeEEEEEe-cCCCC----c-CCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCC
Q 020079 185 SDEMEVMVKEKGINSFKFFMA-YKGSF----M-INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGIT 254 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~-~~~~~----~-~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~ 254 (331)
.++.++++++.|++.+-+.++ -|+.+ . .+.+.++++- +..++|+..|-.+.-..+ ..++..+.|+.
T Consensus 160 peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~---~~v~vPLVlHGgSG~~~e-~~~~ai~~Gi~ 231 (288)
T TIGR00167 160 PEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQ---KYVNLPLVLHGGSGIPDE-EIKKAISLGVV 231 (288)
T ss_pred HHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHH---HHhCCCEEEeCCCCCCHH-HHHHHHHcCCe
Confidence 467777886679998876554 24433 2 4556666554 445899999965432222 23445566654
No 211
>PRK15452 putative protease; Provisional
Probab=78.80 E-value=52 Score=31.49 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCCeEEEEEecCC------CCcCCHHHHHHHHHHHHHcCCcEEEE
Q 020079 185 SDEMEVMVKEKGINSFKFFMAYKG------SFMINDELLIEGFKRCKSLGALAMVH 234 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~~~~------~~~~~~~~l~~~~~~A~~~g~~v~~H 234 (331)
++.++.++ +.|++.+ |++... ...++.+.++++++.|+++|.++.+-
T Consensus 13 ~e~l~aAi-~~GADaV--Y~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt 65 (443)
T PRK15452 13 LKNMRYAF-AYGADAV--YAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVV 65 (443)
T ss_pred HHHHHHHH-HCCCCEE--EECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 44555666 6788876 333211 12456788999999999999887665
No 212
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=78.73 E-value=39 Score=28.97 Aligned_cols=48 Identities=15% Similarity=0.130 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCCeEEE-EEecCCCC--cCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 185 SDEMEVMVKEKGINSFKF-FMAYKGSF--MINDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~-~~~~~~~~--~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
.++++++. +.|++.+.+ .++++..+ .+.++.++++.+. ..++++.+|.
T Consensus 15 ~~~i~~l~-~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~--~~~~~~dvHL 65 (220)
T PRK08883 15 GEDVEKVL-AAGADVVHFDVMDNHYVPNLTFGAPICKALRDY--GITAPIDVHL 65 (220)
T ss_pred HHHHHHHH-HcCCCEEEEecccCcccCccccCHHHHHHHHHh--CCCCCEEEEe
Confidence 34555555 678887754 34444433 3456666666432 0378999995
No 213
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=77.98 E-value=52 Score=29.52 Aligned_cols=117 Identities=9% Similarity=-0.036 Sum_probs=61.0
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc---CCcEEEEcCC-chhhHHHHHHHHHcCCCCccccccc-CChHHH
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL---GALAMVHAEN-GDAVFEGQKRMIELGITGPEGHALS-RPPLLE 268 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~e~-~~~~~~~~~~~~~~G~~~~~~~~~~-~~~~~e 268 (331)
+.|++++-+..+....+.++.++-+++++.+.+. .+++.+|+.. ..+.-+..+.+.+.|...--..+.. .+.. +
T Consensus 37 ~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s-~ 115 (296)
T TIGR03249 37 GYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIARLAEKAGADGYLLLPPYLINGE-Q 115 (296)
T ss_pred hcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHHHHHHhCCCEEEECCCCCCCCC-H
Confidence 6788887543333334567888877777765553 4788888632 2222233355677776542111110 1111 2
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCC-HHHHHHHHHHHHcCCCEE
Q 020079 269 GEATTRAIRLAEFVNTPLYVVHVMS-MDAMEEIAKARKAGPNFL 311 (331)
Q Consensus 269 ~~~i~~~~~l~~~~g~~~~i~H~~~-~~~~~~i~~~~~~Gi~v~ 311 (331)
...++-+-.++...+.++.+-+.+. .-..+.++++.+..-+|.
T Consensus 116 ~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~~~~nvv 159 (296)
T TIGR03249 116 EGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLADRCPNLV 159 (296)
T ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHhhCCCEE
Confidence 2333444455556677877777432 223455666654333443
No 214
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=77.88 E-value=26 Score=31.39 Aligned_cols=126 Identities=17% Similarity=0.122 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhCCCeEEEEEecCC-CCcCCHHHHHHHHHHHHHcCCcEE---EEcC---Cc--------hhhHHHHHHHH
Q 020079 185 SDEMEVMVKEKGINSFKFFMAYKG-SFMINDELLIEGFKRCKSLGALAM---VHAE---NG--------DAVFEGQKRMI 249 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~~~~-~~~~~~~~l~~~~~~A~~~g~~v~---~H~e---~~--------~~~~~~~~~~~ 249 (331)
.+.+.+.+ +.|.+.+ +++... ++.-+-+.-+++++.|+.+|+.|- .|.. +. ..+++..+...
T Consensus 90 ~e~i~~ai-~~GftSV--M~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~ 166 (285)
T PRK07709 90 FEKCKEAI-DAGFTSV--MIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVE 166 (285)
T ss_pred HHHHHHHH-HcCCCEE--EEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHH
Confidence 34555666 5676554 444322 112224456889999999999883 3432 11 12344445566
Q ss_pred HcCCCCcc-----cccc-cCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCC-EEEecCCc
Q 020079 250 ELGITGPE-----GHAL-SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPN-FLNTTIPL 317 (331)
Q Consensus 250 ~~G~~~~~-----~~~~-~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~-v~~~~~p~ 317 (331)
+.|+.... .|+. ..++.+. .++.-++.+..++++ +-|.+++-..++++++.+.||. |.++|...
T Consensus 167 ~TgvD~LAvaiGt~HG~Y~~~p~L~---~~~L~~I~~~~~iPL-VLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~ 237 (285)
T PRK07709 167 ATGIDCLAPALGSVHGPYKGEPNLG---FAEMEQVRDFTGVPL-VLHGGTGIPTADIEKAISLGTSKINVNTENQ 237 (285)
T ss_pred HhCCCEEEEeecccccCcCCCCccC---HHHHHHHHHHHCCCE-EEeCCCCCCHHHHHHHHHcCCeEEEeChHHH
Confidence 67765321 1211 1112222 234445556668887 8899888777899999999974 55545433
No 215
>PRK15447 putative protease; Provisional
Probab=77.69 E-value=54 Score=29.56 Aligned_cols=131 Identities=11% Similarity=0.061 Sum_probs=68.1
Q ss_pred ChhhHHHHHHHHHHhCCCeEEEEEecCC---CCcCCHHHHHHHHHHHHHcCCcEEEEcCC----chhhHHHHHHHHHcCC
Q 020079 181 DEVVSDEMEVMVKEKGINSFKFFMAYKG---SFMINDELLIEGFKRCKSLGALAMVHAEN----GDAVFEGQKRMIELGI 253 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~g~~~ik~~~~~~~---~~~~~~~~l~~~~~~A~~~g~~v~~H~e~----~~~~~~~~~~~~~~G~ 253 (331)
+....+.+-..+.+.|++.+ |++... ...++.+.+.++++.++++|..+.+-... +.+.....+ +.+.|.
T Consensus 13 p~~~~~~~~~~~~~~gaDaV--Y~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~-~l~~~~ 89 (301)
T PRK15447 13 PKETVRDFYQRAADSPVDIV--YLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRR-LVENGE 89 (301)
T ss_pred CCCCHHHHHHHHHcCCCCEE--EECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHH-HHhcCC
Confidence 33334445455535688876 444221 12478899999999999999988765322 223332222 333332
Q ss_pred CCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchhhhhhh
Q 020079 254 TGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSNIIRMV 328 (331)
Q Consensus 254 ~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~~~~~~ 328 (331)
.. .....+ ..+.++++.+.++|....-+-..-..++.+++.|+.-. |-+.=++.-.|..|.
T Consensus 90 ~~---v~v~d~---------g~l~~~~e~~~~l~~d~~lni~N~~a~~~l~~~G~~rv--~ls~ELsl~eI~~i~ 150 (301)
T PRK15447 90 FL---VEANDL---------GAVRLLAERGLPFVAGPALNCYNAATLALLARLGATRW--CMPVELSRDWLANLL 150 (301)
T ss_pred CE---EEEeCH---------HHHHHHHhcCCCEEEecccccCCHHHHHHHHHcCCcEE--EECCcCCHHHHHHHH
Confidence 11 111111 11234444577777776544333345666777776322 234555555555553
No 216
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=77.48 E-value=67 Score=31.27 Aligned_cols=113 Identities=12% Similarity=0.113 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc-CCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccC
Q 020079 185 SDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSR 263 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~-g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~ 263 (331)
.+...++. +.|++.|.+..... ....+.+..+++..++. +.++.+=..++...+... +.|..-- +...
T Consensus 168 ~~~A~~~~-~~GADIIDIG~~st---~p~~~~v~~~V~~l~~~~~~pISIDT~~~~v~eaAL----~aGAdiI---NsVs 236 (499)
T TIGR00284 168 EGLAARME-RDGADMVALGTGSF---DDDPDVVKEKVKTALDALDSPVIADTPTLDELYEAL----KAGASGV---IMPD 236 (499)
T ss_pred HHHHHHHH-HCCCCEEEECCCcC---CCcHHHHHHHHHHHHhhCCCcEEEeCCCHHHHHHHH----HcCCCEE---EECC
Confidence 34444445 68999887653322 22455688888888876 899988887777665553 3343211 1000
Q ss_pred ChHHHHHHHHHHHHHHHhcCCCEEEEeCCC----HHHHHHHHHHHHcCC-CEEEe
Q 020079 264 PPLLEGEATTRAIRLAEFVNTPLYVVHVMS----MDAMEEIAKARKAGP-NFLNT 313 (331)
Q Consensus 264 ~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~----~~~~~~i~~~~~~Gi-~v~~~ 313 (331)
....++.+.+++.+|+++.+.|... ..-.+.++.+++.|+ ++.+|
T Consensus 237 -----~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~IIlD 286 (499)
T TIGR00284 237 -----VENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVAAD 286 (499)
T ss_pred -----ccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEEEe
Confidence 1123456677888899999999642 223356788899999 66655
No 217
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=77.44 E-value=31 Score=30.04 Aligned_cols=94 Identities=17% Similarity=0.180 Sum_probs=47.9
Q ss_pred hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHH
Q 020079 195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTR 274 (331)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~ 274 (331)
.-++.+|+ ++......+.+.+++.++.++++|+.+..- ....+ .+.. ...+++
T Consensus 36 ~yID~~K~--g~Gt~~l~~~~~l~eki~l~~~~gV~v~~G----Gtl~E---~a~~------------------q~~~~~ 88 (244)
T PF02679_consen 36 DYIDFLKF--GWGTSALYPEEILKEKIDLAHSHGVYVYPG----GTLFE---VAYQ------------------QGKFDE 88 (244)
T ss_dssp GG-SEEEE---TTGGGGSTCHHHHHHHHHHHCTT-EEEE-----HHHHH---HHHH------------------TT-HHH
T ss_pred hhccEEEe--cCceeeecCHHHHHHHHHHHHHcCCeEeCC----cHHHH---HHHh------------------cChHHH
Confidence 34567776 333344557788888888888888887532 00100 0000 123455
Q ss_pred HHHHHHhcCCC-EEEEeCCC----HHHHHHHHHHHHcCCCEEEecC
Q 020079 275 AIRLAEFVNTP-LYVVHVMS----MDAMEEIAKARKAGPNFLNTTI 315 (331)
Q Consensus 275 ~~~l~~~~g~~-~~i~H~~~----~~~~~~i~~~~~~Gi~v~~~~~ 315 (331)
+++.++..|.. +.++-.+- ..-.+.++++++.|..|-.++-
T Consensus 89 yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 89 YLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp HHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES
T ss_pred HHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEeeccc
Confidence 66666766654 33333221 2334567777777776665544
No 218
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=76.72 E-value=40 Score=29.74 Aligned_cols=29 Identities=10% Similarity=0.056 Sum_probs=14.3
Q ss_pred HHHHHHHHHHH-cCCcEEEEcCCchhhHHH
Q 020079 216 LLIEGFKRCKS-LGALAMVHAENGDAVFEG 244 (331)
Q Consensus 216 ~l~~~~~~A~~-~g~~v~~H~e~~~~~~~~ 244 (331)
.+..+++..++ .++|+.+=..+++..+..
T Consensus 56 r~~~~v~~l~~~~~~plsIDT~~~~v~eaa 85 (261)
T PRK07535 56 TMEWLVETVQEVVDVPLCIDSPNPAAIEAG 85 (261)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCHHHHHHH
Confidence 34445554433 266665555554444433
No 219
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=76.63 E-value=58 Score=29.36 Aligned_cols=117 Identities=9% Similarity=-0.010 Sum_probs=59.1
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc---CCcEEEEcC-CchhhHHHHHHHHHcCCCCcccccccCChHHHH
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL---GALAMVHAE-NGDAVFEGQKRMIELGITGPEGHALSRPPLLEG 269 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~e-~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~ 269 (331)
+.|++++-+..+.......+.++-+++++.+.+. .+|+.+++. +..+.-+..+...+.|...--..+.......+.
T Consensus 39 ~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~ 118 (303)
T PRK03620 39 PYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAGADGILLLPPYLTEAPQE 118 (303)
T ss_pred HcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHH
Confidence 5788877543333334556777777776655443 477888863 233333333556777765422111110001122
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCC-HHHHHHHHHHHHcCCCE
Q 020079 270 EATTRAIRLAEFVNTPLYVVHVMS-MDAMEEIAKARKAGPNF 310 (331)
Q Consensus 270 ~~i~~~~~l~~~~g~~~~i~H~~~-~~~~~~i~~~~~~Gi~v 310 (331)
..++-+..++...+.++.+-+.+. .-..+.+.++.++--+|
T Consensus 119 ~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~~~~pni 160 (303)
T PRK03620 119 GLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLAERCPNL 160 (303)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHhhCCCE
Confidence 333444455666678877777542 12345566655332344
No 220
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=76.51 E-value=55 Score=29.14 Aligned_cols=115 Identities=15% Similarity=0.068 Sum_probs=63.1
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc---CCcEEEEcC--CchhhHHHHHHHHHcCCCCccccccc-CChHH
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL---GALAMVHAE--NGDAVFEGQKRMIELGITGPEGHALS-RPPLL 267 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~e--~~~~~~~~~~~~~~~G~~~~~~~~~~-~~~~~ 267 (331)
+.|++++-+..+.......+.++-+++++.+.+. .+++.+|+. +..+.-+..+...+.|..+--..+.. .+..
T Consensus 30 ~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~- 108 (285)
T TIGR00674 30 ENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYYNKPT- 108 (285)
T ss_pred HcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCC-
Confidence 5788887543232334566777777777765554 478888863 34444444456777777543211110 1111
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCH----HHHHHHHHHHHcCCCE
Q 020079 268 EGEATTRAIRLAEFVNTPLYVVHVMSM----DAMEEIAKARKAGPNF 310 (331)
Q Consensus 268 e~~~i~~~~~l~~~~g~~~~i~H~~~~----~~~~~i~~~~~~Gi~v 310 (331)
+...++-...++...+.++.+-+.+.. -..+.++++.+.. +|
T Consensus 109 ~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~~-~v 154 (285)
T TIGR00674 109 QEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAEEP-NI 154 (285)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHcCC-CE
Confidence 223334455566666888888887642 2345666665433 44
No 221
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=76.07 E-value=58 Score=29.13 Aligned_cols=66 Identities=17% Similarity=0.280 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhCCCeEEEEEec-CC----CCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCC
Q 020079 185 SDEMEVMVKEKGINSFKFFMAY-KG----SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGIT 254 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~~-~~----~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~ 254 (331)
.++..+++++.|++.+-+.++. |+ .+..+.+.|+++.+ ..+.|+..|-.+.-..+ ..++..+.|+.
T Consensus 157 pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~---~~~vPLVlHGgSG~~~e-~~~~ai~~Gi~ 227 (284)
T PRK12857 157 PEEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKE---LVNIPIVLHGSSGVPDE-AIRKAISLGVR 227 (284)
T ss_pred HHHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHH---HhCCCEEEeCCCCCCHH-HHHHHHHcCCe
Confidence 5667777767799987665432 33 34566777777755 34899999964432222 23444556653
No 222
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=74.97 E-value=52 Score=29.96 Aligned_cols=50 Identities=24% Similarity=0.422 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCeEEEEEe-cCCCC---------cCCHHHHHHHHHHHHHc-CCcEEEEcCC
Q 020079 185 SDEMEVMVKEKGINSFKFFMA-YKGSF---------MINDELLIEGFKRCKSL-GALAMVHAEN 237 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~-~~~~~---------~~~~~~l~~~~~~A~~~-g~~v~~H~e~ 237 (331)
.++..+++++.|++.+-+.++ -|+.+ ..+.+.++++-+ .. ++|+..|-.+
T Consensus 166 peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~---~~~~vPLVLHGgS 226 (321)
T PRK07084 166 PEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEK---RIPGFPIVLHGSS 226 (321)
T ss_pred HHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHH---hcCCCCEEEeCCC
Confidence 566777776679988765443 23333 345555655444 44 6999999654
No 223
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=74.82 E-value=44 Score=29.94 Aligned_cols=67 Identities=19% Similarity=0.246 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHhCCCeEEEEEec-CCC------CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCC
Q 020079 184 VSDEMEVMVKEKGINSFKFFMAY-KGS------FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGI 253 (331)
Q Consensus 184 ~~~~~~~~~~~~g~~~ik~~~~~-~~~------~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~ 253 (331)
..++..+++++.|++.+-+.++. |+. +..+.+.|+++.+... ++|+.+|-.+.-.. +..+...+.|+
T Consensus 156 dP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~--~iPLVlHGgSG~~~-e~~~~ai~~Gi 229 (287)
T PF01116_consen 156 DPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVP--DIPLVLHGGSGLPD-EQIRKAIKNGI 229 (287)
T ss_dssp SHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHH--TSEEEESSCTTS-H-HHHHHHHHTTE
T ss_pred CHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcC--CCCEEEECCCCCCH-HHHHHHHHcCc
Confidence 35677788878899998775542 333 3344555665555443 99999996443222 22334455555
No 224
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=74.65 E-value=48 Score=28.56 Aligned_cols=103 Identities=13% Similarity=0.056 Sum_probs=57.9
Q ss_pred hHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHH-hccceeeccccccccCCChhh-----HHHHHHHHHHhCCCe
Q 020079 126 DFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK-AKNSCMDYGFHMAITKWDEVV-----SDEMEVMVKEKGINS 199 (331)
Q Consensus 126 ~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~ 199 (331)
++....+.++..|+.++.-.. . ........... ......-..+..+.. ..+.. ..++++.. +.|++.
T Consensus 20 ~~~~~~~~a~~~~~~av~v~p--~---~~~~~~~~~~~~~~~~~~vi~fp~g~~-~~~~k~~~~~~~~ve~A~-~~GAd~ 92 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVTP--G---YVKPAAELLAGSGVKVGLVIGFPFGTS-TTEPKGYDQIVAEVEEAI-RLGADE 92 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEEG--G---GHHHHHHHSTTSTSEEEEEESTTTSSS-THHHHTCEEEHHHHHHHH-HTT-SE
T ss_pred hHHHHHHHHHHhCCCEEEECH--H---HHHHHHHHhhccccccceEEEeCCCCC-ccccccccchHHHHHHHH-HcCCce
Confidence 677778888888998887221 1 11111111111 111111122221111 11222 56677777 789999
Q ss_pred EEEEEecC---C-CCcCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 200 FKFFMAYK---G-SFMINDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 200 ik~~~~~~---~-~~~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
+++.+.+. . ....-.+++.++.+.|+++++++.+.+
T Consensus 93 vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~ 132 (236)
T PF01791_consen 93 VDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEP 132 (236)
T ss_dssp EEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEE
T ss_pred eeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 99888762 1 112235678899999999999999985
No 225
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=74.43 E-value=64 Score=28.82 Aligned_cols=112 Identities=6% Similarity=-0.046 Sum_probs=56.5
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc---CCcEEEEcC-CchhhHHHHHHHHHcCCCCcccccccCChHHHH
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL---GALAMVHAE-NGDAVFEGQKRMIELGITGPEGHALSRPPLLEG 269 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~e-~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~ 269 (331)
+.|++++-+..+.......+.++-+++++.+.+. ++|+.+|+. +..+.-+..+.+.+.|..+--..+.......+.
T Consensus 32 ~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~ 111 (289)
T cd00951 32 SYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAGADGILLLPPYLTEAPQE 111 (289)
T ss_pred HcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHH
Confidence 5788877543333334556777777766655443 477888853 333333334556777765421111100001122
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCC-HHHHHHHHHHHH
Q 020079 270 EATTRAIRLAEFVNTPLYVVHVMS-MDAMEEIAKARK 305 (331)
Q Consensus 270 ~~i~~~~~l~~~~g~~~~i~H~~~-~~~~~~i~~~~~ 305 (331)
..++-+-.++...+.++.+-+.+. .-..+.+.++.+
T Consensus 112 ~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~ 148 (289)
T cd00951 112 GLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAE 148 (289)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 223334445555677877776542 123455555554
No 226
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=74.16 E-value=17 Score=33.89 Aligned_cols=86 Identities=17% Similarity=0.045 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeC
Q 020079 213 NDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (331)
Q Consensus 213 ~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~ 291 (331)
..+.++++++.|+++|+++..|. ++.+.+. ...+.|+...+. |...| ..+.+.+.|..+..++-
T Consensus 207 ~~e~i~~~v~~A~~~G~~v~sH~~~~~e~i~----~a~~~Gv~~~E~-----~~t~e------~a~~~~~~G~~v~~~~p 271 (376)
T TIGR02318 207 GLANRSEIAALARARGIPLASHDDDTPEHVA----EAHDLGVTISEF-----PTTLE------AAKEARSLGMQILMGAP 271 (376)
T ss_pred cHHHHHHHHHHHHHCCCeEEEecCCCHHHHH----HHHHCCCChhcc-----CCCHH------HHHHHHHcCCeEEECCc
Confidence 47899999999999999999998 6666554 345556644331 11222 23455566776554421
Q ss_pred -----CCHHHHHHHHHHHHcCCCEEEe
Q 020079 292 -----MSMDAMEEIAKARKAGPNFLNT 313 (331)
Q Consensus 292 -----~~~~~~~~i~~~~~~Gi~v~~~ 313 (331)
........+.++.+.|+....+
T Consensus 272 ~~~r~~~~~~~~~l~~~~~~G~~~~l~ 298 (376)
T TIGR02318 272 NIVRGGSHSGNLSARELAHEGLLDVLA 298 (376)
T ss_pred cccccccccchHHHHHHHHCCCcEEEE
Confidence 0111235677788889866543
No 227
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=74.14 E-value=32 Score=30.76 Aligned_cols=125 Identities=17% Similarity=0.113 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhCCCeEEEEEecCC-CCcCCHHHHHHHHHHHHHcCCcE---EEEcC---Cc--------hhhHHHHHHHH
Q 020079 185 SDEMEVMVKEKGINSFKFFMAYKG-SFMINDELLIEGFKRCKSLGALA---MVHAE---NG--------DAVFEGQKRMI 249 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~~~~-~~~~~~~~l~~~~~~A~~~g~~v---~~H~e---~~--------~~~~~~~~~~~ 249 (331)
.+.+.+.+ +.|.+.+ +++... +..-+.+.-+++++.|+.+|+.+ ..|.. +. ..+++..+...
T Consensus 90 ~e~i~~ai-~~GftSV--M~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~ 166 (286)
T PRK08610 90 FEKCKEAI-DAGFTSV--MIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVE 166 (286)
T ss_pred HHHHHHHH-HcCCCEE--EEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHH
Confidence 44555666 5676554 334322 11112345678999999999988 33432 11 12334445566
Q ss_pred HcCCCCcc-----cccc--cCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCC-EEEecCCc
Q 020079 250 ELGITGPE-----GHAL--SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPN-FLNTTIPL 317 (331)
Q Consensus 250 ~~G~~~~~-----~~~~--~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~-v~~~~~p~ 317 (331)
+.|+.... .|+. ..| .+. .++.-++.+..++++ +-|..++-..+.++++.+.||. |.++|...
T Consensus 167 ~TgvD~LAvaiGt~HG~Y~~~p-~Ld---~~~L~~I~~~~~vPL-VLHGgSG~~~e~~~~ai~~GI~KiNi~T~l~ 237 (286)
T PRK08610 167 KTGIDALAPALGSVHGPYKGEP-KLG---FKEMEEIGLSTGLPL-VLHGGTGIPTKDIQKAIPFGTAKINVNTENQ 237 (286)
T ss_pred HHCCCEEEeeccccccccCCCC-CCC---HHHHHHHHHHHCCCE-EEeCCCCCCHHHHHHHHHCCCeEEEeccHHH
Confidence 66764321 1111 112 222 333444555668887 8899888777899999999973 44445443
No 228
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=73.84 E-value=53 Score=28.32 Aligned_cols=45 Identities=11% Similarity=0.072 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCeEEE-EEecCCCC--cCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 185 SDEMEVMVKEKGINSFKF-FMAYKGSF--MINDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~-~~~~~~~~--~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
.++++++. +.|++.+.+ .++++..+ .+.++.++.+- .+.++.+|.
T Consensus 28 ~~el~~l~-~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~-----~~~~~DvHL 75 (228)
T PRK08091 28 NETLTTLS-ENQLRLLHFDIADGQFSPFFTVGAIAIKQFP-----THCFKDVHL 75 (228)
T ss_pred HHHHHHHH-HCCCCEEEEeccCCCcCCccccCHHHHHHhC-----CCCCEEEEe
Confidence 35565555 678887754 33444433 34567776663 278999995
No 229
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=73.78 E-value=69 Score=28.87 Aligned_cols=121 Identities=15% Similarity=0.108 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc---CCcEEEEc--CCchhhHHHHHHHHHcCCCCcc
Q 020079 183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL---GALAMVHA--ENGDAVFEGQKRMIELGITGPE 257 (331)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~--e~~~~~~~~~~~~~~~G~~~~~ 257 (331)
+..+++.+..-+.|++++-+..+....+..+.++-+++++.+.+. .+|+.+++ .+..+.-+..+...+.|..+--
T Consensus 25 ~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il 104 (299)
T COG0329 25 EALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGIL 104 (299)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEE
Confidence 334444443336888887554333445567888888888877666 26688885 3445555555677888875432
Q ss_pred ccc--ccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH----HHHHHHHHHHH
Q 020079 258 GHA--LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM----DAMEEIAKARK 305 (331)
Q Consensus 258 ~~~--~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~----~~~~~i~~~~~ 305 (331)
... ...|. +....+.+..++...+.++.+-.++.. -..+.+.++.+
T Consensus 105 ~v~PyY~k~~--~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~ 156 (299)
T COG0329 105 VVPPYYNKPS--QEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAE 156 (299)
T ss_pred EeCCCCcCCC--hHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 111 11222 234455566777777888878776542 23455555555
No 230
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=73.57 E-value=66 Score=28.58 Aligned_cols=116 Identities=13% Similarity=0.051 Sum_probs=61.9
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcC--CchhhHHHHHHHHHcCCCCccccccc-CChHHHHH
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE--NGDAVFEGQKRMIELGITGPEGHALS-RPPLLEGE 270 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e--~~~~~~~~~~~~~~~G~~~~~~~~~~-~~~~~e~~ 270 (331)
+.|++++-+..+.......+.++-+++++.+.+..-++.+|+. +..+.-+..+...+.|..+--..... .+... .+
T Consensus 31 ~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~-~~ 109 (279)
T cd00953 31 SKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKVIFQVGSLNLEESIELARAAKSFGIYAIASLPPYYFPGIP-EE 109 (279)
T ss_pred HcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCCEEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCC-HH
Confidence 6788887544333344567888877777766555445777753 34444444456677776543211110 11011 13
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCH----HHHHHHHHHHHcCCCEE
Q 020079 271 ATTRAIRLAEFVNTPLYVVHVMSM----DAMEEIAKARKAGPNFL 311 (331)
Q Consensus 271 ~i~~~~~l~~~~g~~~~i~H~~~~----~~~~~i~~~~~~Gi~v~ 311 (331)
.+.+......+ +.++.+-+++.. -..+.+.++.+..-+|.
T Consensus 110 ~i~~yf~~v~~-~lpv~iYn~P~~tg~~l~~~~l~~L~~~~p~vv 153 (279)
T cd00953 110 WLIKYFTDISS-PYPTFIYNYPKATGYDINARMAKEIKKAGGDII 153 (279)
T ss_pred HHHHHHHHHHh-cCCEEEEeCccccCCCCCHHHHHHHHhcCCCEE
Confidence 44444444444 788888877632 13456666655433443
No 231
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=73.39 E-value=17 Score=33.61 Aligned_cols=39 Identities=23% Similarity=0.264 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCCEEEEeCC---CHHH-HHHHHHHHHcCCC
Q 020079 271 ATTRAIRLAEFVNTPLYVVHVM---SMDA-MEEIAKARKAGPN 309 (331)
Q Consensus 271 ~i~~~~~l~~~~g~~~~i~H~~---~~~~-~~~i~~~~~~Gi~ 309 (331)
.+.+.++.+.+.|.++.+.-.. +... .+.++.+++.|+.
T Consensus 133 ~v~~~i~~l~~~g~~v~v~~vv~~~N~~~l~~~~~~~~~lg~~ 175 (358)
T TIGR02109 133 QKLAMARAVKAAGLPLTLNFVIHRHNIDQIPEIIELAIELGAD 175 (358)
T ss_pred HHHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHHHHHcCCC
Confidence 3445667777788776554322 2233 3467777888876
No 232
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=73.05 E-value=64 Score=30.06 Aligned_cols=124 Identities=12% Similarity=0.033 Sum_probs=69.4
Q ss_pred CCChhhHHHHHHHHHhCCceEEecCcCCCCCc----HHHHHHHHHHHhccceeecc----ccccccCCChhhHHHHHHHH
Q 020079 121 SETIDDFFSGQAAALAGGTTMHIDFVIPINGS----LTAGFEAYEKKAKNSCMDYG----FHMAITKWDEVVSDEMEVMV 192 (331)
Q Consensus 121 ~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 192 (331)
..+++++....+.+.+.|+|.+.=.++..+.. ..+.++..++..+...+... +..-.........+.++++.
T Consensus 89 ~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk 168 (370)
T COG1060 89 TLSPEEILEEVREAVKRGITEVLIVGGEHPELSLEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRLK 168 (370)
T ss_pred ccCHHHHHHHHHHHHHcCCeEEEEecCcCCCcchHHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHHHHHHHHH
Confidence 46788888888999999999988544433331 22333333332221111100 00000001111223366666
Q ss_pred HHhCCCeEEEEEec---------CCCCcCCHHHHHHHHHHHHHcCCcE-----EEEcCCchhhHHHH
Q 020079 193 KEKGINSFKFFMAY---------KGSFMINDELLIEGFKRCKSLGALA-----MVHAENGDAVFEGQ 245 (331)
Q Consensus 193 ~~~g~~~ik~~~~~---------~~~~~~~~~~l~~~~~~A~~~g~~v-----~~H~e~~~~~~~~~ 245 (331)
+.|.+.+-.+... +.+.-.+.+...++.+.|++.|++. ..|.|+..+.....
T Consensus 169 -~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~tatml~Gh~E~~ed~~~hl 234 (370)
T COG1060 169 -EAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLLGHVETREDRIDHL 234 (370)
T ss_pred -HcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEEecCCHHHHHHHH
Confidence 6777665322111 3345567888889999999999875 56888876665554
No 233
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=72.93 E-value=59 Score=27.78 Aligned_cols=49 Identities=18% Similarity=0.081 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCCeEEE-EEecCCCCcC--CHHHHHHHHHHHHHcCCcEEEEc--CCc
Q 020079 186 DEMEVMVKEKGINSFKF-FMAYKGSFMI--NDELLIEGFKRCKSLGALAMVHA--ENG 238 (331)
Q Consensus 186 ~~~~~~~~~~g~~~ik~-~~~~~~~~~~--~~~~l~~~~~~A~~~g~~v~~H~--e~~ 238 (331)
++++++. ++|++.+.+ .|+.+..++. .++.++++.. ....++.+|. +++
T Consensus 20 ~el~~~~-~agad~iH~DVMDghFVPNiTfGp~~v~~l~~---~t~~p~DvHLMV~~p 73 (220)
T COG0036 20 EELKALE-AAGADLIHIDVMDGHFVPNITFGPPVVKALRK---ITDLPLDVHLMVENP 73 (220)
T ss_pred HHHHHHH-HcCCCEEEEeccCCCcCCCcccCHHHHHHHhh---cCCCceEEEEecCCH
Confidence 4555554 789988764 3455544443 4566655544 3368999994 554
No 234
>PRK14057 epimerase; Provisional
Probab=72.30 E-value=68 Score=28.17 Aligned_cols=45 Identities=7% Similarity=-0.107 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCeEEE-EEecCCCC--cCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 185 SDEMEVMVKEKGINSFKF-FMAYKGSF--MINDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~-~~~~~~~~--~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
.++++++. +.|++.+.+ .++++..+ .+.++.++++- + ..++.+|.
T Consensus 35 ~~el~~l~-~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~----~-~~p~DvHL 82 (254)
T PRK14057 35 HRYLQQLE-ALNQPLLHLDLMDGQFCPQFTVGPWAVGQLP----Q-TFIKDVHL 82 (254)
T ss_pred HHHHHHHH-HCCCCEEEEeccCCccCCccccCHHHHHHhc----c-CCCeeEEe
Confidence 35555555 678887754 34444433 45677777772 2 68999994
No 235
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=72.19 E-value=70 Score=28.47 Aligned_cols=111 Identities=13% Similarity=0.078 Sum_probs=54.8
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHH---cCCcEEEEc--CCchhhHHHHHHHHHcCCCCccccccc-CChHH
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKS---LGALAMVHA--ENGDAVFEGQKRMIELGITGPEGHALS-RPPLL 267 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~---~g~~v~~H~--e~~~~~~~~~~~~~~~G~~~~~~~~~~-~~~~~ 267 (331)
+.|++++-+..+......++.++-+++++.+.+ .+.++.+++ .+..+.-+..+.+.+.|..+--..... .+..
T Consensus 33 ~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s- 111 (289)
T PF00701_consen 33 EAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYYFKPS- 111 (289)
T ss_dssp HTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCC-
T ss_pred HcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEeccccccch-
Confidence 567777643322222345666666666665544 346777775 344444444456667776543211111 1111
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCC----HHHHHHHHHHHH
Q 020079 268 EGEATTRAIRLAEFVNTPLYVVHVMS----MDAMEEIAKARK 305 (331)
Q Consensus 268 e~~~i~~~~~l~~~~g~~~~i~H~~~----~~~~~~i~~~~~ 305 (331)
+...++-.-.++...+.++.+-+.+. .-+.+.+.++.+
T Consensus 112 ~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~ 153 (289)
T PF00701_consen 112 QEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAK 153 (289)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhc
Confidence 22334444555666677777766641 223455555554
No 236
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=72.10 E-value=67 Score=28.02 Aligned_cols=52 Identities=13% Similarity=0.015 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCC-------HHHHHHHHHHHHcCCCEEEecCCccccc
Q 020079 270 EATTRAIRLAEFVNTPLYVVHVMS-------MDAMEEIAKARKAGPNFLNTTIPLCDSC 321 (331)
Q Consensus 270 ~~i~~~~~l~~~~g~~~~i~H~~~-------~~~~~~i~~~~~~Gi~v~~~~~p~~~~~ 321 (331)
..+++.++.+.+.|..+.+.-... --..+.++++++.|++|+.+..-|...-
T Consensus 185 ~~~~~il~~~~~~g~~lEiNt~g~r~~~~~~yP~~~il~~~~~~g~~itlgSDAH~~~~ 243 (253)
T TIGR01856 185 ELLQRILKLVASQGKALEFNTSGLRKPLEEAYPSKELLNLAKELGIPLVLGSDAHGPGD 243 (253)
T ss_pred HHHHHHHHHHHHcCCEEEEEcHhhcCCCCCCCCCHHHHHHHHHcCCCEEecCCCCCHHH
Confidence 456888899999998877763210 0124688999999999999888776543
No 237
>PRK15108 biotin synthase; Provisional
Probab=71.81 E-value=59 Score=29.95 Aligned_cols=110 Identities=10% Similarity=-0.000 Sum_probs=60.2
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCC-------Ccc-cccccCCh
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGIT-------GPE-GHALSRPP 265 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~-------~~~-~~~~~~~~ 265 (331)
+.|+..+-...++..+...+.+.+..+++.+++.++.+.++... ...+..+.+.+.|+. +.+ .+...++.
T Consensus 90 ~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~--ls~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~ 167 (345)
T PRK15108 90 AAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGT--LSESQAQRLANAGLDYYNHNLDTSPEFYGNIITT 167 (345)
T ss_pred HcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCc--CCHHHHHHHHHcCCCEEeeccccChHhcCCCCCC
Confidence 56777664433322333445677888888888888877655432 224555677888886 221 11111121
Q ss_pred HHHHHHHHHHHHHHHhcCCCE----EEEeCCC-HHHHHHHHHHHHc
Q 020079 266 LLEGEATTRAIRLAEFVNTPL----YVVHVMS-MDAMEEIAKARKA 306 (331)
Q Consensus 266 ~~e~~~i~~~~~l~~~~g~~~----~i~H~~~-~~~~~~i~~~~~~ 306 (331)
. .....-+.++.+.+.|..+ .+.|.-+ .+.++.+..+++.
T Consensus 168 ~-~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l 212 (345)
T PRK15108 168 R-TYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANL 212 (345)
T ss_pred C-CHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHHHHHHHHHHHhc
Confidence 1 2334455666667677543 2333323 3445666667766
No 238
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=71.66 E-value=24 Score=32.87 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCCCEEEEeCC---CHHH-HHHHHHHHHcCCCE
Q 020079 271 ATTRAIRLAEFVNTPLYVVHVM---SMDA-MEEIAKARKAGPNF 310 (331)
Q Consensus 271 ~i~~~~~l~~~~g~~~~i~H~~---~~~~-~~~i~~~~~~Gi~v 310 (331)
.+.+.++++.+.|.++.+.-.. +... .+.++.+++.|+..
T Consensus 142 ~~~~~i~~l~~~g~~v~i~~vv~~~N~~~i~~~~~~~~~lgv~~ 185 (378)
T PRK05301 142 KKLAVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELAVELGADR 185 (378)
T ss_pred HHHHHHHHHHHCCCceEEEEEeecCCHHHHHHHHHHHHHcCCCE
Confidence 3445667777888776554322 2333 34677788889874
No 239
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=71.01 E-value=78 Score=28.32 Aligned_cols=111 Identities=15% Similarity=0.026 Sum_probs=56.2
Q ss_pred HhC-CCeEEEEEecCCCCcCCHHHHHHHHHHHHHc---CCcEEEEcC--CchhhHHHHHHHHHcCCCCccccccc-CChH
Q 020079 194 EKG-INSFKFFMAYKGSFMINDELLIEGFKRCKSL---GALAMVHAE--NGDAVFEGQKRMIELGITGPEGHALS-RPPL 266 (331)
Q Consensus 194 ~~g-~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~e--~~~~~~~~~~~~~~~G~~~~~~~~~~-~~~~ 266 (331)
..| ++++-+..+.......+.++-+++++.+.+. .+++.+|+. +.++..+..+...+.|..+--..... .+..
T Consensus 32 ~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~ 111 (290)
T TIGR00683 32 DKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFS 111 (290)
T ss_pred hCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCC
Confidence 567 7776443332333556777776666655443 467788853 33444444455677776442211110 1111
Q ss_pred HHHHHHHHHHHHHHhc-CCCEEEEeCCCH----HHHHHHHHHHH
Q 020079 267 LEGEATTRAIRLAEFV-NTPLYVVHVMSM----DAMEEIAKARK 305 (331)
Q Consensus 267 ~e~~~i~~~~~l~~~~-g~~~~i~H~~~~----~~~~~i~~~~~ 305 (331)
+...+.-.-+++... +.++.+-+++.. -..+.+.++.+
T Consensus 112 -~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~~ 154 (290)
T TIGR00683 112 -FPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELYK 154 (290)
T ss_pred -HHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHHhc
Confidence 222333343444545 578888877632 12345665554
No 240
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=70.92 E-value=67 Score=27.57 Aligned_cols=48 Identities=19% Similarity=0.140 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCCeEEE-EEecCCCC--cCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 185 SDEMEVMVKEKGINSFKF-FMAYKGSF--MINDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~-~~~~~~~~--~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
.++++++. +.|++.+.+ .++++..+ .+.++.++++.+.. .++++.+|.
T Consensus 19 ~~~i~~l~-~~g~d~lHiDimDG~FVPN~tfg~~~i~~lr~~~--~~~~~dvHL 69 (223)
T PRK08745 19 GEEVDNVL-KAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHG--ITAPIDVHL 69 (223)
T ss_pred HHHHHHHH-HcCCCEEEEecccCccCCCcccCHHHHHHHHhhC--CCCCEEEEe
Confidence 34555555 678887754 34444433 34566665553310 378999995
No 241
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=70.75 E-value=74 Score=27.96 Aligned_cols=46 Identities=15% Similarity=0.045 Sum_probs=30.1
Q ss_pred HHHHHHHhCCCeEEEEEecC----CCCcCCHHHHHHHHHHHHHcCCcEEE
Q 020079 188 MEVMVKEKGINSFKFFMAYK----GSFMINDELLIEGFKRCKSLGALAMV 233 (331)
Q Consensus 188 ~~~~~~~~g~~~ik~~~~~~----~~~~~~~~~l~~~~~~A~~~g~~v~~ 233 (331)
..+.+.+.|.+.+.+..... .....+.+.++++.+.++++|+.+..
T Consensus 21 ~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 21 RLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred HHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceE
Confidence 33344378988887754321 11234677788899999999998753
No 242
>PRK05588 histidinol-phosphatase; Provisional
Probab=70.35 E-value=73 Score=27.75 Aligned_cols=53 Identities=6% Similarity=-0.132 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCC------HHHHHHHHHHHHcCCC-EEEecCCccccch
Q 020079 270 EATTRAIRLAEFVNTPLYVVHVMS------MDAMEEIAKARKAGPN-FLNTTIPLCDSCS 322 (331)
Q Consensus 270 ~~i~~~~~l~~~~g~~~~i~H~~~------~~~~~~i~~~~~~Gi~-v~~~~~p~~~~~~ 322 (331)
..+++.++.+.+.|..+.+.-... ......++++++.|++ ++++..-|...-+
T Consensus 166 ~~~~~il~~~~~~g~~lEINt~~l~~~~~~~~~~~~l~~~~~~g~~~i~lgSDAH~~~~v 225 (255)
T PRK05588 166 EIIDEILKVLIEKEKVLEINTRRLDDKRSVENLVKIYKRFYELGGKYITLGSDAHNIEDI 225 (255)
T ss_pred HHHHHHHHHHHHcCCEEEEECcccCCCCCCCCHHHHHHHHHHcCCcEEEEECCCCCHHHH
Confidence 345677788888887776664221 1234578888888888 6888777775544
No 243
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=69.23 E-value=82 Score=27.90 Aligned_cols=108 Identities=9% Similarity=-0.122 Sum_probs=50.1
Q ss_pred CCChhhHHHHHHHHHhCCceEEecCcCCCCC---cHHH---HHHHHHHHhccceeeccccccccC-CChhhHHHHHHHHH
Q 020079 121 SETIDDFFSGQAAALAGGTTMHIDFVIPING---SLTA---GFEAYEKKAKNSCMDYGFHMAITK-WDEVVSDEMEVMVK 193 (331)
Q Consensus 121 ~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 193 (331)
..+.+.+....+.++..|+..+.-.+..+.. +..+ .++...+.... +.....+... ...+..+..+.+.
T Consensus 17 ~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~---~~~vi~gv~~~~~~~~~~~a~~a~- 92 (284)
T cd00950 17 SVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNG---RVPVIAGTGSNNTAEAIELTKRAE- 92 (284)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCC---CCcEEeccCCccHHHHHHHHHHHH-
Confidence 3455666666777788888887754433221 2222 22222222211 1111111211 1223333333333
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHH-HHHHHHHHcCCcEEEE
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLI-EGFKRCKSLGALAMVH 234 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~-~~~~~A~~~g~~v~~H 234 (331)
+.|++++-+.. | .....+++.+. ..-+.++..++|+.++
T Consensus 93 ~~G~d~v~~~~-P-~~~~~~~~~l~~~~~~ia~~~~~pi~lY 132 (284)
T cd00950 93 KAGADAALVVT-P-YYNKPSQEGLYAHFKAIAEATDLPVILY 132 (284)
T ss_pred HcCCCEEEEcc-c-ccCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 67888775432 1 11222444443 3444555568888877
No 244
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=69.21 E-value=1.8e+02 Score=31.72 Aligned_cols=149 Identities=17% Similarity=0.155 Sum_probs=87.0
Q ss_pred cHHHHHHHHHHHhccceeecccc----ccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc
Q 020079 152 SLTAGFEAYEKKAKNSCMDYGFH----MAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227 (331)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~ 227 (331)
+-++.++.+++..++..+..-.. .+....+++..+...+...+.|++.+.+|-..+ +.+.++..++.+++.
T Consensus 590 dPwerl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~f~~~~~~~GidifrifD~lN-----~~~n~~~~~~~~~~~ 664 (1143)
T TIGR01235 590 DPWERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKYFVKQAAQGGIDIFRVFDSLN-----WVENMRVGMDAVAEA 664 (1143)
T ss_pred CHHHHHHHHHHhCCCCceeeeeccccccCccCCCHHHHHHHHHHHHHcCCCEEEECccCc-----CHHHHHHHHHHHHHc
Confidence 45677777777766644433221 234445666666666655478999998874432 678899999999999
Q ss_pred CCcEEEE-cCCc---------hhhH---HHHHHHHHcCCCCcc---cccccCChHHHHHHHHHHHHHH-HhcCCCEEE-E
Q 020079 228 GALAMVH-AENG---------DAVF---EGQKRMIELGITGPE---GHALSRPPLLEGEATTRAIRLA-EFVNTPLYV-V 289 (331)
Q Consensus 228 g~~v~~H-~e~~---------~~~~---~~~~~~~~~G~~~~~---~~~~~~~~~~e~~~i~~~~~l~-~~~g~~~~i-~ 289 (331)
|..+..- |... ...+ .....+.+.|..... ..+...| ..+.+.+..+ +..+.++++ +
T Consensus 665 g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P-----~~~~~Lv~~lk~~~~~pi~~H~ 739 (1143)
T TIGR01235 665 GKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKP-----AAAKLLIKALREKTDLPIHFHT 739 (1143)
T ss_pred CCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCH-----HHHHHHHHHHHHhcCCeEEEEE
Confidence 9876443 2220 1122 223446677753211 1111222 2333333333 334677665 4
Q ss_pred eCCCHHHHHHHHHHHHcCCCE
Q 020079 290 HVMSMDAMEEIAKARKAGPNF 310 (331)
Q Consensus 290 H~~~~~~~~~i~~~~~~Gi~v 310 (331)
|.+.+.++.-.-.+-++|+.+
T Consensus 740 Hdt~Gla~an~laA~eaGad~ 760 (1143)
T TIGR01235 740 HDTSGIAVASMLAAVEAGVDV 760 (1143)
T ss_pred CCCCCcHHHHHHHHHHhCCCE
Confidence 777777777777788899886
No 245
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=69.10 E-value=89 Score=28.23 Aligned_cols=34 Identities=9% Similarity=0.048 Sum_probs=22.5
Q ss_pred EEeCCCHH-HHHHHHHHHHcCCCEEEecCCccccchh
Q 020079 288 VVHVMSMD-AMEEIAKARKAGPNFLNTTIPLCDSCSN 323 (331)
Q Consensus 288 i~H~~~~~-~~~~i~~~~~~Gi~v~~~~~p~~~~~~~ 323 (331)
+.|+.... .-+.+++++++|+.|. +||.++..++
T Consensus 214 i~H~~~l~~~~~~~~~l~~~gi~v~--~~P~sn~~l~ 248 (325)
T cd01320 214 IGHGIRAIEDPELVKRLAERNIPLE--VCPTSNVQTG 248 (325)
T ss_pred cchhhccCccHHHHHHHHHcCCeEE--ECCCcccccc
Confidence 55655431 2257888999997666 7887776554
No 246
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=69.06 E-value=83 Score=28.83 Aligned_cols=104 Identities=15% Similarity=0.120 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeC
Q 020079 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (331)
Q Consensus 212 ~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~ 291 (331)
++.+.++++.+.|++.|+.+..=+-+...++ .+.+.|+...+-... + ..-..+++.+...|.++.+.-.
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd----~l~~~~v~~~KIaS~------~-~~n~pLL~~~A~~gkPvilStG 141 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLESAD----FLEDLGVPRFKIPSG------E-ITNAPLLKKIARFGKPVILSTG 141 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHHHHH----HHHhcCCCEEEECcc------c-ccCHHHHHHHHhcCCcEEEECC
Confidence 5778999999999999999987766555443 334555443221110 0 0112345666778889877754
Q ss_pred C-CHHHH-HHHHHHHHcCCC---EEE--ec--CCccccchhhhh
Q 020079 292 M-SMDAM-EEIAKARKAGPN---FLN--TT--IPLCDSCSNIIR 326 (331)
Q Consensus 292 ~-~~~~~-~~i~~~~~~Gi~---v~~--~~--~p~~~~~~~~~~ 326 (331)
. +.+.+ ..++.+++.|.+ |.. |+ ||......++..
T Consensus 142 matl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~ 185 (329)
T TIGR03569 142 MATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNA 185 (329)
T ss_pred CCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHH
Confidence 3 33332 345556777764 554 32 244444444443
No 247
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=68.65 E-value=1.2e+02 Score=29.38 Aligned_cols=199 Identities=17% Similarity=0.169 Sum_probs=109.6
Q ss_pred cccccccccCCCCCCCChhhHHHHHHHHHhCCceEEecCcCC--------CCCcHHHHHHHHHHHhccceeecccc----
Q 020079 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP--------INGSLTAGFEAYEKKAKNSCMDYGFH---- 174 (331)
Q Consensus 107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~---- 174 (331)
|-|.|--+.. ...+.+++...+..+-+.|+-++--.++. ...+-++.++.+++..++..+.....
T Consensus 20 lRDg~QSl~a---tr~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~ 96 (468)
T PRK12581 20 LRDGHQSLMA---TRLSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNL 96 (468)
T ss_pred ccchhhhccc---cCCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeeccccc
Confidence 4455544332 23556666666666666787776533211 12255777787777776654443222
Q ss_pred ccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEE---EEcCCchh----hHHHHHH
Q 020079 175 MAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM---VHAENGDA----VFEGQKR 247 (331)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~---~H~e~~~~----~~~~~~~ 247 (331)
.+....+++..+...+.+.+.|++.+.++-.. -+.+.++..++.+++.|..+. .|..++.. .....+.
T Consensus 97 vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~l-----nd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~ 171 (468)
T PRK12581 97 LGYRHYADDIVDKFISLSAQNGIDVFRIFDAL-----NDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKE 171 (468)
T ss_pred cCccCCcchHHHHHHHHHHHCCCCEEEEcccC-----CCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHH
Confidence 22333445555555555447899998876432 267889999999999998753 33333322 2233345
Q ss_pred HHHcCCCCcc---cccccCChHHHHHHHHHHHHHHHh-cCCCEEE-EeCCCHHHHHHHHHHHHcCCCEE-EecCCcc
Q 020079 248 MIELGITGPE---GHALSRPPLLEGEATTRAIRLAEF-VNTPLYV-VHVMSMDAMEEIAKARKAGPNFL-NTTIPLC 318 (331)
Q Consensus 248 ~~~~G~~~~~---~~~~~~~~~~e~~~i~~~~~l~~~-~g~~~~i-~H~~~~~~~~~i~~~~~~Gi~v~-~~~~p~~ 318 (331)
+.+.|..... ..+...| ..+.+.+...++ .+.++++ +|++.+-+++-.-.+-++|+.+. +..+|..
T Consensus 172 l~~~Gad~I~IkDtaG~l~P-----~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~g~g 243 (468)
T PRK12581 172 LVEMGADSICIKDMAGILTP-----KAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSPFS 243 (468)
T ss_pred HHHcCCCEEEECCCCCCcCH-----HHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEeeccccC
Confidence 6677764321 1111122 333444444333 3455543 47777777777777888998753 3344433
No 248
>PRK08444 hypothetical protein; Provisional
Probab=68.57 E-value=50 Score=30.54 Aligned_cols=102 Identities=19% Similarity=0.094 Sum_probs=55.8
Q ss_pred hhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhH-----------HHHHHHHH
Q 020079 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVF-----------EGQKRMIE 250 (331)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~-----------~~~~~~~~ 250 (331)
++..+.+++.. +.|+..+-+..+.+ +..+.+.+..++...++.--.+++|+-++.++. +....+.+
T Consensus 83 eeI~~~a~~a~-~~G~~ei~iv~G~~--p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~Lke 159 (353)
T PRK08444 83 EEILEIVKNSV-KRGIKEVHIVSAHN--PNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLE 159 (353)
T ss_pred HHHHHHHHHHH-HCCCCEEEEeccCC--CCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34455555544 67888776553322 223667788888888765334888875555543 33356777
Q ss_pred cCCCCccccc----------ccCChHHHHHHHHHHHHHHHhcCCCE
Q 020079 251 LGITGPEGHA----------LSRPPLLEGEATTRAIRLAEFVNTPL 286 (331)
Q Consensus 251 ~G~~~~~~~~----------~~~~~~~e~~~i~~~~~l~~~~g~~~ 286 (331)
.|+..-.+.. ...|.....+...+..+.+.+.|.++
T Consensus 160 AGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~ 205 (353)
T PRK08444 160 YGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMS 205 (353)
T ss_pred hCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCc
Confidence 7775432211 11222222233344456677777765
No 249
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=68.57 E-value=84 Score=27.75 Aligned_cols=110 Identities=7% Similarity=-0.091 Sum_probs=53.7
Q ss_pred CCCChhhHHHHHHHHHhCCceEEecCcCCCCC---cHHH---HHHHHHHHhccceeeccccccccCCChhhHHHHHHHHH
Q 020079 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPING---SLTA---GFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVK 193 (331)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (331)
+..+.+.+....+.++..|+..+.-.+..+.. +..+ .++...+... ..+.+....+.. ...+..+..+ .++
T Consensus 13 g~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~-~~~~vi~gv~~~-~~~~~i~~a~-~a~ 89 (281)
T cd00408 13 GEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVA-GRVPVIAGVGAN-STREAIELAR-HAE 89 (281)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEecCCc-cHHHHHHHHH-HHH
Confidence 34556677777778888999888755443322 2222 2233322221 111111111111 1223333333 333
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHH-HHHHHHHHHcCCcEEEE
Q 020079 194 EKGINSFKFFMAYKGSFMINDELL-IEGFKRCKSLGALAMVH 234 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l-~~~~~~A~~~g~~v~~H 234 (331)
+.|++++-+.. |. -...+++.+ +...+.++..++|+.++
T Consensus 90 ~~Gad~v~v~p-P~-y~~~~~~~~~~~~~~ia~~~~~pi~iY 129 (281)
T cd00408 90 EAGADGVLVVP-PY-YNKPSQEGIVAHFKAVADASDLPVILY 129 (281)
T ss_pred HcCCCEEEECC-Cc-CCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 67888875532 21 122344444 44555566678998887
No 250
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=68.44 E-value=71 Score=26.83 Aligned_cols=100 Identities=17% Similarity=0.119 Sum_probs=54.2
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhc----cceeeccccccccCCChhhHHHHHHHHHHhCC
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK----NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGI 197 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 197 (331)
.+.+++....+.+...|+..++-.. ..+...++... .......|..+. ...+....++++.+ +.|+
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~p--------~~v~~~~~~l~~~~~~v~~~~~fp~g~-~~~~~k~~eve~A~-~~GA 83 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVNP--------CFVPLAREALKGSGVKVCTVIGFPLGA-TTTEVKVAEAREAI-ADGA 83 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcH--------HHHHHHHHHcCCCCcEEEEEEecCCCC-CcHHHHHHHHHHHH-HcCC
Confidence 4677888888888998988887321 11222222111 111122222222 22344556677777 7899
Q ss_pred CeEEEEEecCCC----CcCCHHHHHHHHHHHHHcCCcEEE
Q 020079 198 NSFKFFMAYKGS----FMINDELLIEGFKRCKSLGALAMV 233 (331)
Q Consensus 198 ~~ik~~~~~~~~----~~~~~~~l~~~~~~A~~~g~~v~~ 233 (331)
+.+.+.+..... +....+++.++.+.|+ |+++-+
T Consensus 84 devdvv~~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkv 121 (203)
T cd00959 84 DEIDMVINIGALKSGDYEAVYEEIAAVVEACG--GAPLKV 121 (203)
T ss_pred CEEEEeecHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEE
Confidence 999888765421 1112345556666654 676644
No 251
>PRK12999 pyruvate carboxylase; Reviewed
Probab=67.48 E-value=1.9e+02 Score=31.48 Aligned_cols=178 Identities=15% Similarity=0.123 Sum_probs=96.2
Q ss_pred ChhhHHHHHHHHHhC--CceEEecCcC--------CCCCcHHHHHHHHHHHhccceeecccc----ccccCCChhhHHH-
Q 020079 123 TIDDFFSGQAAALAG--GTTMHIDFVI--------PINGSLTAGFEAYEKKAKNSCMDYGFH----MAITKWDEVVSDE- 187 (331)
Q Consensus 123 ~~~~~~~~~~~~l~~--GvTtv~d~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~- 187 (331)
+.++....+..+-+. |+-++--.++ ....+-++.++..++..++..+..... .+....++...++
T Consensus 553 ~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~ 632 (1146)
T PRK12999 553 RTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAF 632 (1146)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHHHHH
Confidence 344444444445455 7777543221 112255677777777666544332221 2333345555565
Q ss_pred HHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEE-c-C----Cc----hhhH---HHHHHHHHcCCC
Q 020079 188 MEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH-A-E----NG----DAVF---EGQKRMIELGIT 254 (331)
Q Consensus 188 ~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H-~-e----~~----~~~~---~~~~~~~~~G~~ 254 (331)
++... +.|++.+.+|...+ +.+.++..++.+++.|....+- + + ++ ...+ ...+.+.+.|..
T Consensus 633 i~~a~-~~Gid~~rifd~ln-----d~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~ 706 (1146)
T PRK12999 633 VREAA-AAGIDVFRIFDSLN-----WVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAH 706 (1146)
T ss_pred HHHHH-HcCCCEEEEeccCC-----hHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 54555 78999998875322 3577899999999999753332 2 3 11 1222 223446677764
Q ss_pred Ccc---cccccCChHHHHHHHHHHHHHH-HhcCCCEEE-EeCCCHHHHHHHHHHHHcCCCEE
Q 020079 255 GPE---GHALSRPPLLEGEATTRAIRLA-EFVNTPLYV-VHVMSMDAMEEIAKARKAGPNFL 311 (331)
Q Consensus 255 ~~~---~~~~~~~~~~e~~~i~~~~~l~-~~~g~~~~i-~H~~~~~~~~~i~~~~~~Gi~v~ 311 (331)
... ..+...| ..+.+.+..+ +..+.++++ +|.+.+-+++-.-.+.++|+.+.
T Consensus 707 ~i~ikDt~G~l~P-----~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~an~laA~~aGad~v 763 (1146)
T PRK12999 707 ILAIKDMAGLLKP-----AAAYELVSALKEEVDLPIHLHTHDTSGNGLATYLAAAEAGVDIV 763 (1146)
T ss_pred EEEECCccCCCCH-----HHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHhCCCEE
Confidence 321 1111223 2333333333 334666654 47777777777777888998754
No 252
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=66.77 E-value=1.1e+02 Score=28.20 Aligned_cols=123 Identities=15% Similarity=0.101 Sum_probs=65.5
Q ss_pred hhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchh-----------hHHHHHHHHH
Q 020079 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA-----------VFEGQKRMIE 250 (331)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~-----------~~~~~~~~~~ 250 (331)
++..+.++.+. +.|+..+.+. +.. .+....+.+.++++..++....+..|+.++.+ ..+..+.+.+
T Consensus 73 eeI~e~~~~~~-~~G~~~i~l~-gG~-~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~Lke 149 (343)
T TIGR03551 73 EEIAERAAEAW-KAGATEVCIQ-GGI-HPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKE 149 (343)
T ss_pred HHHHHHHHHHH-HCCCCEEEEE-eCC-CCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 44455555544 5687776554 222 23346778888999888886666667643222 2444567888
Q ss_pred cCCCCcc-----ccc-----ccCChHHHHHHHHHHHHHHHhcCCCE----EEEeCCCH-HHHHHHHHHHHcC
Q 020079 251 LGITGPE-----GHA-----LSRPPLLEGEATTRAIRLAEFVNTPL----YVVHVMSM-DAMEEIAKARKAG 307 (331)
Q Consensus 251 ~G~~~~~-----~~~-----~~~~~~~e~~~i~~~~~l~~~~g~~~----~i~H~~~~-~~~~~i~~~~~~G 307 (331)
.|+..-. ... ...|.....+...+.++.+++.|.++ .+.|.-+. +-.+.+..+++.+
T Consensus 150 AGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l~~lr~l~ 221 (343)
T TIGR03551 150 AGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLILREIQ 221 (343)
T ss_pred hCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHHHHHHHHHhh
Confidence 8876332 110 01121111223356677888887653 34444332 3344555555544
No 253
>PRK09875 putative hydrolase; Provisional
Probab=66.77 E-value=98 Score=27.82 Aligned_cols=40 Identities=20% Similarity=0.149 Sum_probs=30.1
Q ss_pred HHHHHHhcCC---CEEEEeCCCHHHHHHHHHHHHcCCCEEEec
Q 020079 275 AIRLAEFVNT---PLYVVHVMSMDAMEEIAKARKAGPNFLNTT 314 (331)
Q Consensus 275 ~~~l~~~~g~---~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~ 314 (331)
.++++.+.|+ ++.+.|+....+.+..+++.++|..+..|+
T Consensus 168 ~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD~ 210 (292)
T PRK09875 168 QLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDT 210 (292)
T ss_pred HHHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCEEEecc
Confidence 3567777776 688888865566677888888898888765
No 254
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=66.46 E-value=6.3 Score=31.79 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=23.0
Q ss_pred ccccccccCC-CCCCCChhhHHHHHHHHHhCCceEEe
Q 020079 108 IDPHTHLAME-FMGSETIDDFFSGQAAALAGGTTMHI 143 (331)
Q Consensus 108 ID~H~H~~~~-~~~~~~~~~~~~~~~~~l~~GvTtv~ 143 (331)
||.|+|...+ ..|..+++++ .+.+.+.|++++.
T Consensus 1 iDlH~HT~~s~~dg~~~~~e~---v~~A~~~Gl~~i~ 34 (175)
T PF02811_consen 1 IDLHVHTKYSILDGKDSPEEY---VEQAKEKGLDAIA 34 (175)
T ss_dssp EEEEB--TTTSSTSSSSHHHH---HHHHHHTTESEEE
T ss_pred CCccccccCcchhhcCCHHHH---HHHHHHcCCCEEE
Confidence 7999999876 3344555555 6888999999876
No 255
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=66.45 E-value=88 Score=27.17 Aligned_cols=180 Identities=17% Similarity=0.055 Sum_probs=92.8
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCC------CcHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHh
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPIN------GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEK 195 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (331)
.+.++.....+.+.+.||..+--.+.... ....+.++...+..+...+.. .. .+ ..+.++.+. +.
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~--l~----~~--~~~~i~~a~-~~ 86 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQA--LV----RN--REKGIERAL-EA 86 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEE--Ec----cC--chhhHHHHH-hC
Confidence 35566666677778889887653222222 244555555554442221111 11 01 134555555 67
Q ss_pred CCCeEEEEEecCC---------CCcCCHHHHHHHHHHHHHcCCcEEEEcC-------CchhhHHHHHHHHHcCCCCcc--
Q 020079 196 GINSFKFFMAYKG---------SFMINDELLIEGFKRCKSLGALAMVHAE-------NGDAVFEGQKRMIELGITGPE-- 257 (331)
Q Consensus 196 g~~~ik~~~~~~~---------~~~~~~~~l~~~~~~A~~~g~~v~~H~e-------~~~~~~~~~~~~~~~G~~~~~-- 257 (331)
|.+.+.++..... ...-..+.+...++.+++.|+.+.+..+ +.+.+....+.+.+.|...-.
T Consensus 87 g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~ 166 (265)
T cd03174 87 GVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK 166 (265)
T ss_pred CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 8888887765320 0001245677888899999999887753 223344444556677753321
Q ss_pred -cccccCChHHHHHHHHHHHHHHHhc-C-CCEE-EEeCCCHHHHHHHHHHHHcCCCEEEecCC
Q 020079 258 -GHALSRPPLLEGEATTRAIRLAEFV-N-TPLY-VVHVMSMDAMEEIAKARKAGPNFLNTTIP 316 (331)
Q Consensus 258 -~~~~~~~~~~e~~~i~~~~~l~~~~-g-~~~~-i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p 316 (331)
..+...| ..+.+.+....+. + .++. .+|...+-+++-.-.+-+.|+.. ++++.
T Consensus 167 Dt~G~~~P-----~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~-id~s~ 223 (265)
T cd03174 167 DTVGLATP-----EEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADR-VDGSV 223 (265)
T ss_pred hhcCCcCH-----HHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCE-EEecc
Confidence 1111122 2333334333332 2 3332 24555566666666677889765 34443
No 256
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=66.17 E-value=1.5e+02 Score=29.64 Aligned_cols=178 Identities=16% Similarity=0.173 Sum_probs=96.8
Q ss_pred CChhhHHHHHHHHHhCCceEEecCc--------CCCCCcHHHHHHHHHHHhccceeecccc----ccccCCChhhHHH-H
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFV--------IPINGSLTAGFEAYEKKAKNSCMDYGFH----MAITKWDEVVSDE-M 188 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~ 188 (331)
.+.++....++.+.+.|+..+--.+ .......++.++.+++..++..+..... .+....+++..+. +
T Consensus 18 ~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v 97 (582)
T TIGR01108 18 MRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFV 97 (582)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHH
Confidence 4566666666777778988775321 1112245666666665444432221111 1222334443333 4
Q ss_pred HHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEE-c--CCc----hhhHHHHHHHHHcCCCCcc---c
Q 020079 189 EVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH-A--ENG----DAVFEGQKRMIELGITGPE---G 258 (331)
Q Consensus 189 ~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H-~--e~~----~~~~~~~~~~~~~G~~~~~---~ 258 (331)
+... +.|++.+.++...+ +.+.+...++.|++.|+.+.+- + .++ +......+.+.+.|..... .
T Consensus 98 ~~a~-~~Gvd~irif~~ln-----d~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt 171 (582)
T TIGR01108 98 KKAV-ENGMDVFRIFDALN-----DPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICIKDM 171 (582)
T ss_pred HHHH-HCCCCEEEEEEecC-----cHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 4444 78999998876533 3467888999999999987653 2 222 3333334556677764321 1
Q ss_pred ccccCChHHHHHHHHHHHHHH-HhcCCCEEE-EeCCCHHHHHHHHHHHHcCCCE
Q 020079 259 HALSRPPLLEGEATTRAIRLA-EFVNTPLYV-VHVMSMDAMEEIAKARKAGPNF 310 (331)
Q Consensus 259 ~~~~~~~~~e~~~i~~~~~l~-~~~g~~~~i-~H~~~~~~~~~i~~~~~~Gi~v 310 (331)
.+...| ..+.+.+..+ +..+.++++ +|.+.+-+++-.-.+-++|+.+
T Consensus 172 ~G~~~P-----~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAveaGa~~ 220 (582)
T TIGR01108 172 AGILTP-----KAAYELVSALKKRFGLPVHLHSHATTGMAEMALLKAIEAGADG 220 (582)
T ss_pred CCCcCH-----HHHHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCE
Confidence 111223 2333333333 334566543 4666666666677777889875
No 257
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=66.15 E-value=76 Score=26.66 Aligned_cols=111 Identities=12% Similarity=0.103 Sum_probs=62.6
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEE
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFK 201 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik 201 (331)
.+.++.....+.++.+|+..+--.. ......+.++..++..+...+.. +.. .+ .+.+++.. +.|++.+
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~--~t~~a~~~I~~l~~~~p~~~vGA----GTV-~~---~e~a~~a~-~aGA~Fi- 84 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITL--RTPNALEAIEALRKEFPDLLVGA----GTV-LT---AEQAEAAI-AAGAQFI- 84 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEET--TSTTHHHHHHHHHHHHTTSEEEE----ES---S---HHHHHHHH-HHT-SEE-
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEec--CCccHHHHHHHHHHHCCCCeeEE----Eec-cC---HHHHHHHH-HcCCCEE-
Confidence 4567777778889999999875211 12245666666665554432221 111 12 23455555 6788665
Q ss_pred EEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCccc
Q 020079 202 FFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 258 (331)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~ 258 (331)
++|+ ++ .++++.|+++++++.--+-++.|+... .+.|...-+.
T Consensus 85 --vSP~----~~----~~v~~~~~~~~i~~iPG~~TptEi~~A----~~~G~~~vK~ 127 (196)
T PF01081_consen 85 --VSPG----FD----PEVIEYAREYGIPYIPGVMTPTEIMQA----LEAGADIVKL 127 (196)
T ss_dssp --EESS----------HHHHHHHHHHTSEEEEEESSHHHHHHH----HHTT-SEEEE
T ss_pred --ECCC----CC----HHHHHHHHHcCCcccCCcCCHHHHHHH----HHCCCCEEEE
Confidence 3432 33 456677889999998888888887554 4556544443
No 258
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=65.76 E-value=1.1e+02 Score=28.17 Aligned_cols=102 Identities=14% Similarity=0.016 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHcCCcEEE-E--cC----CchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCC--C
Q 020079 215 ELLIEGFKRCKSLGALAMV-H--AE----NGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT--P 285 (331)
Q Consensus 215 ~~l~~~~~~A~~~g~~v~~-H--~e----~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~--~ 285 (331)
+..+++++.+.+.+..+.. . .. +.++.....+...+.|+.-.- |....... ....+++.++.+.+.|. +
T Consensus 158 ~~~~~~v~~~~~~g~~~~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~-H~~e~~~~-~~~~~~~~~~~~~~~g~~~~ 235 (398)
T cd01293 158 PGGEELMREALKMGADVVGGIPPAEIDEDGEESLDTLFELAQEHGLDIDL-HLDETDDP-GSRTLEELAEEAERRGMQGR 235 (398)
T ss_pred CCHHHHHHHHHHhCCCEEeCCCCCcCCccHHHHHHHHHHHHHHhCCCCEE-EeCCCCCc-chhHHHHHHHHHHHhCCCCC
Confidence 4555666666666543222 1 11 123344444556666664322 22111100 01223344555566664 6
Q ss_pred EEEEeCCCHH------HHHHHHHHHHcCCCEEEecCCcccc
Q 020079 286 LYVVHVMSMD------AMEEIAKARKAGPNFLNTTIPLCDS 320 (331)
Q Consensus 286 ~~i~H~~~~~------~~~~i~~~~~~Gi~v~~~~~p~~~~ 320 (331)
+.+.|+.... ..+.+++++++|+.|. .||..+.
T Consensus 236 ~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~--~~p~s~~ 274 (398)
T cd01293 236 VTCSHATALGSLPEAEVSRLADLLAEAGISVV--SLPPINL 274 (398)
T ss_pred EEeeecchhhcCCHHHHHHHHHHHHHcCCeEE--eCCCcch
Confidence 7899986432 2367999999998776 6777654
No 259
>PRK08445 hypothetical protein; Provisional
Probab=65.63 E-value=97 Score=28.59 Aligned_cols=71 Identities=11% Similarity=0.065 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhh-----------HHHHHHHHH
Q 020079 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAV-----------FEGQKRMIE 250 (331)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~-----------~~~~~~~~~ 250 (331)
++..+.+++.. +.|...+ ++.....+..+.+.+.++++..++..-.+..|+-+..++ ++..+.+.+
T Consensus 76 eeI~~~~~~a~-~~g~~~i--~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~Lke 152 (348)
T PRK08445 76 EEIDKKIEELL-AIGGTQI--LFQGGVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQA 152 (348)
T ss_pred HHHHHHHHHHH-HcCCCEE--EEecCCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34444454444 5676655 334333455678888999998888766677776443322 344566788
Q ss_pred cCCCC
Q 020079 251 LGITG 255 (331)
Q Consensus 251 ~G~~~ 255 (331)
.|+..
T Consensus 153 AGl~~ 157 (348)
T PRK08445 153 KGLSS 157 (348)
T ss_pred cCCCC
Confidence 88764
No 260
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.59 E-value=97 Score=27.36 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=33.6
Q ss_pred HHHHHHHHHhCCCeEEEEEecCCCC---cCCHHHHHHHHHHHHHcCCc---EEEEc
Q 020079 186 DEMEVMVKEKGINSFKFFMAYKGSF---MINDELLIEGFKRCKSLGAL---AMVHA 235 (331)
Q Consensus 186 ~~~~~~~~~~g~~~ik~~~~~~~~~---~~~~~~l~~~~~~A~~~g~~---v~~H~ 235 (331)
+.++++. +.|.+.+.+|......+ ..+++...++.+..+++++. +.+|+
T Consensus 15 ~a~~~~~-~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Ha 69 (274)
T TIGR00587 15 AAYNRAA-EIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHA 69 (274)
T ss_pred HHHHHHH-HhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccC
Confidence 4455555 78999999987654322 23566777777778888776 77885
No 261
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=65.25 E-value=86 Score=28.26 Aligned_cols=122 Identities=20% Similarity=0.172 Sum_probs=63.8
Q ss_pred hhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchh-----------hHHHHHHHHH
Q 020079 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA-----------VFEGQKRMIE 250 (331)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~-----------~~~~~~~~~~ 250 (331)
++..++++... +.|...+.+. +.. .+..+.+.+.++++..++....+..|+-+..+ ..+..+.+.+
T Consensus 39 eeI~~~~~~~~-~~G~~~i~l~-gg~-~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~Lke 115 (309)
T TIGR00423 39 EEILEKVKEAV-AKGATEVCIQ-GGL-NPQLDIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKK 115 (309)
T ss_pred HHHHHHHHHHH-HCCCCEEEEe-cCC-CCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34445555444 5677666554 222 23346677888888888876667777544322 2344566777
Q ss_pred cCCCCccccc----------ccCChHHHHHHHHHHHHHHHhcCCCEEEEeCC-----C-HHHHHHHHHHHHcC
Q 020079 251 LGITGPEGHA----------LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM-----S-MDAMEEIAKARKAG 307 (331)
Q Consensus 251 ~G~~~~~~~~----------~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~-----~-~~~~~~i~~~~~~G 307 (331)
.|+..-.+.. ...|.....+...+.++.+++.|.++. ++.- + .+.++.+..+++.+
T Consensus 116 AGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~-s~~iiG~~Et~ed~~~~l~~lr~l~ 187 (309)
T TIGR00423 116 AGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTT-ATMMFGHVENPEHRVEHLLRIRKIQ 187 (309)
T ss_pred cCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCce-eeEEecCCCCHHHHHHHHHHHHhhc
Confidence 7775332100 011211112333466777888887764 3321 1 23345555566554
No 262
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=65.21 E-value=82 Score=28.80 Aligned_cols=124 Identities=17% Similarity=0.193 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhh-----------HHHHHHHHH
Q 020079 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAV-----------FEGQKRMIE 250 (331)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~-----------~~~~~~~~~ 250 (331)
++..+.++.+. +.|+..+-+ .....+..+.+.+.++++..++.+..+.+|+-+..++ .+..+.+.+
T Consensus 75 eei~~~~~~~~-~~G~~~i~l--~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~ 151 (340)
T TIGR03699 75 EEILQKIEELV-AYGGTQILL--QGGVNPDLGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLERLKE 151 (340)
T ss_pred HHHHHHHHHHH-HcCCcEEEE--ecCCCCCCCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHHHH
Confidence 34445555544 567766644 2222334567778888888888776677776444332 344466788
Q ss_pred cCCCCccccc----------ccCChHHHHHHHHHHHHHHHhcCCC----EEEEeCCCH-HHHHHHHHHHHcCC
Q 020079 251 LGITGPEGHA----------LSRPPLLEGEATTRAIRLAEFVNTP----LYVVHVMSM-DAMEEIAKARKAGP 308 (331)
Q Consensus 251 ~G~~~~~~~~----------~~~~~~~e~~~i~~~~~l~~~~g~~----~~i~H~~~~-~~~~~i~~~~~~Gi 308 (331)
.|+..-.+.. ...|.....+...+.++.+++.|.+ +.+.|.-+. +-++.+..+++.+.
T Consensus 152 aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGlgEt~ed~~~~l~~l~~l~~ 224 (340)
T TIGR03699 152 AGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGHVETLEDRIEHLERIRELQD 224 (340)
T ss_pred cCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeCCCCHHHHHHHHHHHHHhch
Confidence 8875432110 0011111123345666777777755 333443232 33455666666553
No 263
>TIGR03586 PseI pseudaminic acid synthase.
Probab=65.17 E-value=54 Score=29.97 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcCC-CEEEEeCCCH-------HHHHHHHHHHH-cCCCEE
Q 020079 270 EATTRAIRLAEFVNT-PLYVVHVMSM-------DAMEEIAKARK-AGPNFL 311 (331)
Q Consensus 270 ~~i~~~~~l~~~~g~-~~~i~H~~~~-------~~~~~i~~~~~-~Gi~v~ 311 (331)
..+...++.....|. .+.+.||.+. -.+..+..+++ .+.+|.
T Consensus 147 ~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~~pVG 197 (327)
T TIGR03586 147 EEIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPVG 197 (327)
T ss_pred HHHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHHhCCCEE
Confidence 345555566666665 5888888642 23344555553 566763
No 264
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=65.06 E-value=91 Score=29.18 Aligned_cols=36 Identities=22% Similarity=0.151 Sum_probs=23.3
Q ss_pred HHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEE
Q 020079 274 RAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFL 311 (331)
Q Consensus 274 ~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~ 311 (331)
+.++.+.+.|+.+.+.|. ..+.+.+.++.++|....
T Consensus 179 ~~i~~l~~~gi~vs~GHs--~A~~~~~~~a~~~Ga~~~ 214 (382)
T PRK11170 179 EVIRKLVEAGIVVSAGHS--NATYEEAKAGFRAGITFA 214 (382)
T ss_pred HHHHHHHHCCcEEEeeCC--cCCHHHHHHHHHcCCCEE
Confidence 466667777777777774 233466777777776544
No 265
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=64.45 E-value=1.1e+02 Score=27.38 Aligned_cols=111 Identities=14% Similarity=0.075 Sum_probs=56.5
Q ss_pred Hh-CCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc---CCcEEEEcC--CchhhHHHHHHHHHcCCCCcccccc-cCChH
Q 020079 194 EK-GINSFKFFMAYKGSFMINDELLIEGFKRCKSL---GALAMVHAE--NGDAVFEGQKRMIELGITGPEGHAL-SRPPL 266 (331)
Q Consensus 194 ~~-g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~e--~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~ 266 (331)
+. |++++-+..+.......+.++-+++++.+.+. .+++.+++. +..+.-+..+...+.|..+--..+. ..++.
T Consensus 32 ~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~ 111 (288)
T cd00954 32 EKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPFYYKFS 111 (288)
T ss_pred hcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCC
Confidence 56 77776443332333556777766666655442 467777753 3444444445667777644211110 01111
Q ss_pred HHHHHHHHHHHHHHhc-CCCEEEEeCCCH----HHHHHHHHHHH
Q 020079 267 LEGEATTRAIRLAEFV-NTPLYVVHVMSM----DAMEEIAKARK 305 (331)
Q Consensus 267 ~e~~~i~~~~~l~~~~-g~~~~i~H~~~~----~~~~~i~~~~~ 305 (331)
+...++-+..++... +.++.+-+.+.. -..+.+.++.+
T Consensus 112 -~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 112 -FEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFE 154 (288)
T ss_pred -HHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 223334444555666 678877776631 13345555554
No 266
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=64.09 E-value=91 Score=26.53 Aligned_cols=108 Identities=16% Similarity=0.099 Sum_probs=58.3
Q ss_pred CCCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHH-HhccceeeccccccccCCChhhHHHHHHHHHHhCCC
Q 020079 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEK-KAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGIN 198 (331)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 198 (331)
...+.+++....+.+...|+-+++-.. ........... ...+...-.+|+.+.. ..+....++++.. +.|++
T Consensus 13 p~~t~~~i~~lc~~A~~~~~~avcv~p-----~~v~~a~~~l~~~~v~v~tVigFP~G~~-~~~~K~~E~~~Av-~~GAd 85 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTYKFAAVCVNP-----SYVPLAKELLKGTEVRICTVVGFPLGAS-TTDVKLYETKEAI-KYGAD 85 (211)
T ss_pred CCCCHHHHHHHHHHHHhhCCcEEEeCH-----HHHHHHHHHcCCCCCeEEEEeCCCCCCC-cHHHHHHHHHHHH-HcCCC
Confidence 346788888889999999998887321 12222222111 1111111223333322 2233456667777 78999
Q ss_pred eEEEEEecCC----CCcCCHHHHHHHHHHHHHcCCcEEEEcC
Q 020079 199 SFKFFMAYKG----SFMINDELLIEGFKRCKSLGALAMVHAE 236 (331)
Q Consensus 199 ~ik~~~~~~~----~~~~~~~~l~~~~~~A~~~g~~v~~H~e 236 (331)
.+.+.++... .+..-.+++.++.+.++ |+++-+=.|
T Consensus 86 EiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~--g~~lKvIlE 125 (211)
T TIGR00126 86 EVDMVINIGALKDGNEEVVYDDIRAVVEACA--GVLLKVIIE 125 (211)
T ss_pred EEEeecchHhhhCCcHHHHHHHHHHHHHHcC--CCeEEEEEe
Confidence 9988776542 22222455666666664 666555333
No 267
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=64.08 E-value=1.1e+02 Score=27.29 Aligned_cols=109 Identities=9% Similarity=-0.080 Sum_probs=55.9
Q ss_pred CCCChhhHHHHHHHHHhCCceEEecCcCCCCC---cHHHH---HHHHHHHh-ccceeeccccccccC-CChhhHHHHHHH
Q 020079 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPING---SLTAG---FEAYEKKA-KNSCMDYGFHMAITK-WDEVVSDEMEVM 191 (331)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~---~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 191 (331)
+..+.+.+....+..+..|+..+.-.+..+.. +..+. ++...+.. .+.++ ..+... ...+..+..+.+
T Consensus 17 g~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~v----i~gv~~~st~~~i~~a~~a 92 (289)
T PF00701_consen 17 GSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPV----IAGVGANSTEEAIELARHA 92 (289)
T ss_dssp SSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEE----EEEEESSSHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEE----EecCcchhHHHHHHHHHHH
Confidence 33455667777788889999998855443322 22222 22222222 12221 122222 223444444444
Q ss_pred HHHhCCCeEEEEEecCCCCcCCHHH-HHHHHHHHHHcCCcEEEEc
Q 020079 192 VKEKGINSFKFFMAYKGSFMINDEL-LIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~-l~~~~~~A~~~g~~v~~H~ 235 (331)
++.|++++-+.. |. ....+++. ++..-+.|..-++|+.++.
T Consensus 93 -~~~Gad~v~v~~-P~-~~~~s~~~l~~y~~~ia~~~~~pi~iYn 134 (289)
T PF00701_consen 93 -QDAGADAVLVIP-PY-YFKPSQEELIDYFRAIADATDLPIIIYN 134 (289)
T ss_dssp -HHTT-SEEEEEE-ST-SSSCCHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred -hhcCceEEEEec-cc-cccchhhHHHHHHHHHHhhcCCCEEEEE
Confidence 378999886543 32 12235544 4455666777789999884
No 268
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=64.02 E-value=90 Score=29.58 Aligned_cols=108 Identities=12% Similarity=0.002 Sum_probs=60.0
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCC---cHHHHHHHHHHH----hccceeeccccccccCCChhhHHHHHHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPING---SLTAGFEAYEKK----AKNSCMDYGFHMAITKWDEVVSDEMEVMVKE 194 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (331)
.+++.+...+.....+|+--+-|-....+. ...+.+....+. .....-...+...++...++..+..+.+. +
T Consensus 157 lsp~~~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~NiT~~~~em~~ra~~~~-~ 235 (412)
T TIGR03326 157 LSTEEHAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAETGERKEYLANITAPVREMERRAELVA-D 235 (412)
T ss_pred CChHHHHHHHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCcceEEEEecCCHHHHHHHHHHHH-H
Confidence 567888888888899999888766443322 333333333222 11111111122223333344444444444 5
Q ss_pred hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
.|...+-+-. ....-..++.+.+.+...+++++.|-
T Consensus 236 ~G~~~~mv~~-----~~~G~~~l~~l~~~~~~~~l~ih~Hr 271 (412)
T TIGR03326 236 LGGQYVMVDV-----VVCGWSALQYIRELTEDLGLAIHAHR 271 (412)
T ss_pred hCCCeEEEEe-----eccchHHHHHHHHhhccCCeEEEEcC
Confidence 7777654322 12334567788777777899999994
No 269
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=63.82 E-value=1.1e+02 Score=27.75 Aligned_cols=24 Identities=21% Similarity=-0.126 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 212 INDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 212 ~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
...+.++++.+.++++|+++.+|+
T Consensus 88 ~~~~~~~~~g~~~~~~~irls~Hp 111 (303)
T PRK02308 88 PFKEELREIGEFIKEHNIRLSFHP 111 (303)
T ss_pred CCHHHHHHHHHHHHHcCCCeeccC
Confidence 457889999999999999999996
No 270
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=63.56 E-value=70 Score=27.01 Aligned_cols=111 Identities=12% Similarity=0.043 Sum_probs=64.7
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEE
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFK 201 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik 201 (331)
.++++.....+.++.+|++.+---. ......+.++..++..+...+. .+.. .+ .+.+++.. +.|.+.+
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~--~tp~a~~~I~~l~~~~~~~~vG----AGTV-l~---~e~a~~ai-~aGA~Fi- 80 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITL--RTPAALDAIRAVAAEVEEAIVG----AGTI-LN---AKQFEDAA-KAGSRFI- 80 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeC--CCccHHHHHHHHHHHCCCCEEe----eEeC-cC---HHHHHHHH-HcCCCEE-
Confidence 4567777778889999999875221 1224556666655544332222 1111 12 23455555 6788655
Q ss_pred EEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCccc
Q 020079 202 FFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 258 (331)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~ 258 (331)
++|. .++ ++++.|+++|+++.--+-++.|+... .+.|...-+.
T Consensus 81 --vSP~----~~~----~vi~~a~~~~i~~iPG~~TptEi~~A----~~~Ga~~vK~ 123 (201)
T PRK06015 81 --VSPG----TTQ----ELLAAANDSDVPLLPGAATPSEVMAL----REEGYTVLKF 123 (201)
T ss_pred --ECCC----CCH----HHHHHHHHcCCCEeCCCCCHHHHHHH----HHCCCCEEEE
Confidence 3332 344 55667889999988777777776544 4556544433
No 271
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=63.50 E-value=1.2e+02 Score=27.88 Aligned_cols=90 Identities=13% Similarity=0.112 Sum_probs=60.0
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEe
Q 020079 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290 (331)
Q Consensus 211 ~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H 290 (331)
+-+++.+.++++.+.++++|+..-.-+++-....++.+.+. .|-.+++. .+...+.++++.++++++.+..
T Consensus 142 Sgdpekfa~ave~v~~~~~pv~l~s~dpevmkaaLev~~dq---kPllYaAt------e~n~~e~~klav~y~vplvl~a 212 (467)
T COG1456 142 SGDPEKFAEAVEKVAEAGLPVILCSFDPEVMKAALEVVKDQ---KPLLYAAT------EDNWKEFAKLAVEYKVPLVLSA 212 (467)
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhhcc---Cceeeecc------cccHHHHHHHHhhcCCcEEEec
Confidence 34789999999999999999988877776666555444332 11122211 2446677888899999986655
Q ss_pred CCCHHHHH-HHHHHHHcCCC
Q 020079 291 VMSMDAME-EIAKARKAGPN 309 (331)
Q Consensus 291 ~~~~~~~~-~i~~~~~~Gi~ 309 (331)
...-+.+. +...++++|+.
T Consensus 213 ~~dl~~lk~la~~~~~~Gi~ 232 (467)
T COG1456 213 FNDLDDLKNLAVTYAQAGIK 232 (467)
T ss_pred cCCHHHHHHHHHHHHHcCCc
Confidence 44444444 56677888875
No 272
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=63.38 E-value=33 Score=24.14 Aligned_cols=9 Identities=44% Similarity=0.608 Sum_probs=6.2
Q ss_pred eeeEEEeCC
Q 020079 70 IADVYVEDG 78 (331)
Q Consensus 70 ~~~v~i~~g 78 (331)
+-+|+|.||
T Consensus 68 dYDVLItd~ 76 (100)
T PF05984_consen 68 DYDVLITDG 76 (100)
T ss_pred cccEEEecC
Confidence 567888665
No 273
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=63.30 E-value=1.2e+02 Score=27.49 Aligned_cols=112 Identities=4% Similarity=-0.076 Sum_probs=50.6
Q ss_pred CCCChhhHHHHHHHHHhCCceEEecCcCCCCC---cHHHHHHHHHHHhccceeeccccccccC-CChhhHHHHHHHHHHh
Q 020079 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPING---SLTAGFEAYEKKAKNSCMDYGFHMAITK-WDEVVSDEMEVMVKEK 195 (331)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 195 (331)
+..+.+.+.......+..||..++-.++.+.. +..+..+..+.......-+.....+... ...+..+..+ .+++.
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~-~A~~~ 102 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTR-ALLDL 102 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHH-HHHHh
Confidence 34556666666777788888888755433322 2222222221111111111111122221 1233333333 33367
Q ss_pred CCCeEEEEEecCCCCcCCHHHHHH-HHHHHHHc-CCcEEEE
Q 020079 196 GINSFKFFMAYKGSFMINDELLIE-GFKRCKSL-GALAMVH 234 (331)
Q Consensus 196 g~~~ik~~~~~~~~~~~~~~~l~~-~~~~A~~~-g~~v~~H 234 (331)
|++++-+..-+ -...+++.+.+ .-+.|... ++|+.+.
T Consensus 103 Gad~vlv~~P~--y~~~~~~~l~~yf~~va~a~~~lPv~iY 141 (309)
T cd00952 103 GADGTMLGRPM--WLPLDVDTAVQFYRDVAEAVPEMAIAIY 141 (309)
T ss_pred CCCEEEECCCc--CCCCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 88877553221 11224444443 44445556 5888776
No 274
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=63.04 E-value=1e+02 Score=26.67 Aligned_cols=41 Identities=10% Similarity=0.093 Sum_probs=26.2
Q ss_pred HHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 188 MEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 188 ~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
.-+.+++.|.+++.+... . ...+..+.+.++++|+.+..+.
T Consensus 19 ~~~~~~e~G~~~vEl~~~----~---~~~~~~l~~~l~~~gl~v~~~~ 59 (254)
T TIGR03234 19 RFAAAAQAGFTGVEYLFP----Y---DWDAEALKARLAAAGLEQVLFN 59 (254)
T ss_pred HHHHHHHcCCCEEEecCC----c---cCCHHHHHHHHHHcCCeEEEEe
Confidence 333334789998876431 1 1235566777789999988763
No 275
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=62.68 E-value=1.1e+02 Score=26.98 Aligned_cols=94 Identities=17% Similarity=0.070 Sum_probs=48.0
Q ss_pred CCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHHHHHHHcCCCCcc
Q 020079 179 KWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPE 257 (331)
Q Consensus 179 ~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~~~~~~~G~~~~~ 257 (331)
...++..+...++.++.|++.+|+=.+ ......++..-+.|+||+.|. -.++..... --+...|
T Consensus 91 ~s~e~av~nA~rl~ke~GadaVKlEGg---------~~~~~~i~~l~~~GIPV~gHiGLtPQ~~~~~-GGyr~qG----- 155 (261)
T PF02548_consen 91 ASPEQAVRNAGRLMKEAGADAVKLEGG---------AEIAETIKALVDAGIPVMGHIGLTPQSVHQL-GGYRVQG----- 155 (261)
T ss_dssp SSHHHHHHHHHHHHHTTT-SEEEEEBS---------GGGHHHHHHHHHTT--EEEEEES-GGGHHHH-TSS--CS-----
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEeccc---------hhHHHHHHHHHHCCCcEEEEecCchhheecc-CCceEEe-----
Confidence 345667777788885699999987321 123344444566899999997 344433211 0011111
Q ss_pred cccccCChHHHHHHHHHHHHHHHhcCCCE-EEEeCCC
Q 020079 258 GHALSRPPLLEGEATTRAIRLAEFVNTPL-YVVHVMS 293 (331)
Q Consensus 258 ~~~~~~~~~~e~~~i~~~~~l~~~~g~~~-~i~H~~~ 293 (331)
+. ..+...+.++...+++.|+-. .+.+.+.
T Consensus 156 -----k~-~~~a~~l~~~A~ale~AGaf~ivlE~vp~ 186 (261)
T PF02548_consen 156 -----KT-AEEAEKLLEDAKALEEAGAFAIVLECVPA 186 (261)
T ss_dssp -----TS-HHHHHHHHHHHHHHHHHT-SEEEEESBBH
T ss_pred -----cC-HHHHHHHHHHHHHHHHcCccEEeeecCHH
Confidence 11 223344556667777788654 4444433
No 276
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=62.68 E-value=1.1e+02 Score=27.21 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCCeEEEEEe-cCCCC-----cCCHHHHHHHHHHHHHcCCcEEEEcCCc
Q 020079 185 SDEMEVMVKEKGINSFKFFMA-YKGSF-----MINDELLIEGFKRCKSLGALAMVHAENG 238 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~-~~~~~-----~~~~~~l~~~~~~A~~~g~~v~~H~e~~ 238 (331)
.++..+.+++.|.+.+-+.++ -|+.+ ..+.+.|+++-+.. ++|+++|-.+.
T Consensus 158 p~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~---~~PlVlHGgSG 214 (286)
T COG0191 158 PEEALEFVERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAV---SLPLVLHGGSG 214 (286)
T ss_pred HHHHHHHHhccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHHh---CCCEEEeCCCC
Confidence 345556665567887765443 24433 35667777766654 49999996553
No 277
>PRK07360 FO synthase subunit 2; Reviewed
Probab=62.17 E-value=81 Score=29.36 Aligned_cols=72 Identities=15% Similarity=0.022 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhh-----------HHHHHHHHHc
Q 020079 183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAV-----------FEGQKRMIEL 251 (331)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~-----------~~~~~~~~~~ 251 (331)
+..+.++.+. +.|+..+.+. ++..+.....+.+.++++..++.--.+++|+-+..++ .+..+.+.+.
T Consensus 95 eI~~~a~~a~-~~G~~~i~l~-~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e~l~~LkeA 172 (371)
T PRK07360 95 EILEKAAEAV-KRGATEVCIQ-GGLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEEVLKALKDA 172 (371)
T ss_pred HHHHHHHHHH-hCCCCEEEEc-cCCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHHHHHHHHHc
Confidence 3444444444 5788877655 3332322236777788888877433466675333222 3344667778
Q ss_pred CCCCc
Q 020079 252 GITGP 256 (331)
Q Consensus 252 G~~~~ 256 (331)
|+..-
T Consensus 173 Gld~~ 177 (371)
T PRK07360 173 GLDSM 177 (371)
T ss_pred CCCcC
Confidence 87554
No 278
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=62.06 E-value=1.2e+02 Score=27.09 Aligned_cols=107 Identities=7% Similarity=-0.133 Sum_probs=48.1
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCC---cHHHH---HHHHHHHhccceeeccccccccC-CChhhHHHHHHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPING---SLTAG---FEAYEKKAKNSCMDYGFHMAITK-WDEVVSDEMEVMVKE 194 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 194 (331)
.+.+.+....+.++..||..+.-.+..+.. +..+. ++...+.... .+.+. .+... ...+..+..+.+. +
T Consensus 19 iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~-~~~vi--~gv~~~~~~~~i~~a~~a~-~ 94 (292)
T PRK03170 19 VDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNG-RVPVI--AGTGSNSTAEAIELTKFAE-K 94 (292)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCC-CCcEE--eecCCchHHHHHHHHHHHH-H
Confidence 445566666677788888887643332211 22222 2222222211 11111 11111 1233333333333 6
Q ss_pred hCCCeEEEEEecCCCCcCCHHHHH-HHHHHHHHcCCcEEEE
Q 020079 195 KGINSFKFFMAYKGSFMINDELLI-EGFKRCKSLGALAMVH 234 (331)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l~-~~~~~A~~~g~~v~~H 234 (331)
.|++.+-+.. |. ....+++.+. ..-+.+...++|+..+
T Consensus 95 ~G~d~v~~~p-P~-~~~~~~~~i~~~~~~ia~~~~~pv~lY 133 (292)
T PRK03170 95 AGADGALVVT-PY-YNKPTQEGLYQHFKAIAEATDLPIILY 133 (292)
T ss_pred cCCCEEEECC-Cc-CCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 7887775432 11 1122444443 3444555667888776
No 279
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=61.66 E-value=1.6e+02 Score=28.38 Aligned_cols=186 Identities=19% Similarity=0.173 Sum_probs=99.3
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcC--------CCCCcHHHHHHHHHHHhccceeeccc----cccccCCChhhH-HHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVI--------PINGSLTAGFEAYEKKAKNSCMDYGF----HMAITKWDEVVS-DEM 188 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~ 188 (331)
.+.++....+....+.|+..+--.+. ......++.++..++..++..+.... ..+....+++.. +.+
T Consensus 23 ~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v 102 (448)
T PRK12331 23 MTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFV 102 (448)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHH
Confidence 44566555566677788888754311 11224566666666554443322111 112222334333 344
Q ss_pred HHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEE-c--CCc----hhhHHHHHHHHHcCCCCcc---c
Q 020079 189 EVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH-A--ENG----DAVFEGQKRMIELGITGPE---G 258 (331)
Q Consensus 189 ~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H-~--e~~----~~~~~~~~~~~~~G~~~~~---~ 258 (331)
+... +.|++.+.++...+ +.+.++..++.|++.|..+.+. + .++ +......+.+.+.|..... .
T Consensus 103 ~~A~-~~Gvd~irif~~ln-----d~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt 176 (448)
T PRK12331 103 QKSV-ENGIDIIRIFDALN-----DVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDM 176 (448)
T ss_pred HHHH-HCCCCEEEEEEecC-----cHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4555 78999998876533 2346888999999999876554 2 222 2222333456677764311 1
Q ss_pred ccccCChHHHHHHHHHHHHHHH-hcCCCEEE-EeCCCHHHHHHHHHHHHcCCCEE-EecCCcc
Q 020079 259 HALSRPPLLEGEATTRAIRLAE-FVNTPLYV-VHVMSMDAMEEIAKARKAGPNFL-NTTIPLC 318 (331)
Q Consensus 259 ~~~~~~~~~e~~~i~~~~~l~~-~~g~~~~i-~H~~~~~~~~~i~~~~~~Gi~v~-~~~~p~~ 318 (331)
.+...| ..+.+.+..++ ..+.++++ +|++.+-+++-.-.+-++|+.+. +.++|..
T Consensus 177 ~G~l~P-----~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~glg 234 (448)
T PRK12331 177 AGILTP-----YVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISPFA 234 (448)
T ss_pred CCCCCH-----HHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcCCCEEEeeccccC
Confidence 111223 23333443333 34666655 57777777777777788998753 3344443
No 280
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=61.53 E-value=85 Score=26.57 Aligned_cols=111 Identities=14% Similarity=0.193 Sum_probs=65.4
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEE
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFK 201 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik 201 (331)
.++++.....+.++.+|++.+--.. ......+.++..++..++..+. .+.. .+ .+++++.. +.|++.+
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~--~t~~a~~~i~~l~~~~~~~~vG----AGTV-l~---~~~a~~a~-~aGA~Fi- 84 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTL--RTPVALDAIRLLRKEVPDALIG----AGTV-LN---PEQLRQAV-DAGAQFI- 84 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC--CCccHHHHHHHHHHHCCCCEEE----EEeC-CC---HHHHHHHH-HcCCCEE-
Confidence 4567777778889999999875211 1124555666665544332222 1111 12 23455566 6888766
Q ss_pred EEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCccc
Q 020079 202 FFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 258 (331)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~ 258 (331)
++|. .++ .+++.|+++|+++.--+-++.|+... .+.|...-+.
T Consensus 85 --vsP~----~~~----~v~~~~~~~~i~~iPG~~TptEi~~A----~~~Ga~~vKl 127 (204)
T TIGR01182 85 --VSPG----LTP----ELAKHAQDHGIPIIPGVATPSEIMLA----LELGITALKL 127 (204)
T ss_pred --ECCC----CCH----HHHHHHHHcCCcEECCCCCHHHHHHH----HHCCCCEEEE
Confidence 3433 333 66777899999988777777776544 4556544433
No 281
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=61.36 E-value=1.7e+02 Score=28.61 Aligned_cols=179 Identities=17% Similarity=0.219 Sum_probs=100.0
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCC--------CCCcHHHHHHHHHHHhccceeecccc----ccccCCChhhHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIP--------INGSLTAGFEAYEKKAKNSCMDYGFH----MAITKWDEVVSDEME 189 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 189 (331)
.+.++....+...-+.|+-++--.++. ...+-++.++.+++..++..+..... .+....+++..+...
T Consensus 24 ~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv 103 (499)
T PRK12330 24 MAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFV 103 (499)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHH
Confidence 456666666666677888777543211 12245677777777766644432221 223334444444333
Q ss_pred HHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEE-------cCCchhhHHHHHHHHHcCCCCcc---cc
Q 020079 190 VMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH-------AENGDAVFEGQKRMIELGITGPE---GH 259 (331)
Q Consensus 190 ~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H-------~e~~~~~~~~~~~~~~~G~~~~~---~~ 259 (331)
+...+.|++.+.+|...+ +.+.++..++.+++.|..+..= ..+.+......+.+.+.|..... ..
T Consensus 104 ~~a~~~Gidi~RIfd~ln-----dv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~IkDta 178 (499)
T PRK12330 104 EKSAENGMDVFRVFDALN-----DPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICIKDMA 178 (499)
T ss_pred HHHHHcCCCEEEEEecCC-----hHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeCCCc
Confidence 333378999998875432 4588889999999998865222 12223333333556777764321 11
Q ss_pred cccCChHHHHHHHHHHHHHHHh-c--CCCEEE-EeCCCHHHHHHHHHHHHcCCCE
Q 020079 260 ALSRPPLLEGEATTRAIRLAEF-V--NTPLYV-VHVMSMDAMEEIAKARKAGPNF 310 (331)
Q Consensus 260 ~~~~~~~~e~~~i~~~~~l~~~-~--g~~~~i-~H~~~~~~~~~i~~~~~~Gi~v 310 (331)
+...| ..+.+.+..+++ . +.++++ +|.+.+-++.-.-.+-++|+.+
T Consensus 179 Gll~P-----~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~ 228 (499)
T PRK12330 179 ALLKP-----QPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDV 228 (499)
T ss_pred cCCCH-----HHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCE
Confidence 11222 334444444433 3 456554 4776666767777788899876
No 282
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=61.25 E-value=97 Score=28.56 Aligned_cols=71 Identities=13% Similarity=0.037 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchh-----------hHHHHHHHHH
Q 020079 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA-----------VFEGQKRMIE 250 (331)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~-----------~~~~~~~~~~ 250 (331)
++..+.+++.. +.|+..+-+. +...+ ..+.+.+.++++..++..-.++.|+-.+.+ .++..+.+.+
T Consensus 82 eeI~~~a~~~~-~~G~~~v~l~-~G~~p-~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~Lke 158 (351)
T TIGR03700 82 EEIVARVKEAY-APGATEVHIV-GGLHP-NLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKE 158 (351)
T ss_pred HHHHHHHHHHH-HCCCcEEEEe-cCCCC-CCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 44444444444 5677766543 33222 345678888888888875446677543332 2333466777
Q ss_pred cCCCC
Q 020079 251 LGITG 255 (331)
Q Consensus 251 ~G~~~ 255 (331)
.|+..
T Consensus 159 AGld~ 163 (351)
T TIGR03700 159 AGLDS 163 (351)
T ss_pred cCCCc
Confidence 77753
No 283
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=61.23 E-value=1.2e+02 Score=27.04 Aligned_cols=111 Identities=14% Similarity=0.103 Sum_probs=55.6
Q ss_pred H-hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc---CCcEEEEcC--CchhhHHHHHHHHHcCCCCccccccc-CChH
Q 020079 194 E-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSL---GALAMVHAE--NGDAVFEGQKRMIELGITGPEGHALS-RPPL 266 (331)
Q Consensus 194 ~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~e--~~~~~~~~~~~~~~~G~~~~~~~~~~-~~~~ 266 (331)
. .|++++-+..+......++.++-.++++.+.+. .+++.+++. +..+.-+..+++.+.|..+--..... .++.
T Consensus 35 ~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~ 114 (293)
T PRK04147 35 EKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPFS 114 (293)
T ss_pred hcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCC
Confidence 5 677776433222223456777766666554433 367777753 34444444455677776542211110 1111
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCCCH----HHHHHHHHHHH
Q 020079 267 LEGEATTRAIRLAEFVNTPLYVVHVMSM----DAMEEIAKARK 305 (331)
Q Consensus 267 ~e~~~i~~~~~l~~~~g~~~~i~H~~~~----~~~~~i~~~~~ 305 (331)
+...++-...++...+.++.+-+.+.. -..+.++++.+
T Consensus 115 -~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 115 -FEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFT 156 (293)
T ss_pred -HHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhc
Confidence 122333444555566778877776532 12345555543
No 284
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=60.80 E-value=79 Score=27.71 Aligned_cols=121 Identities=14% Similarity=0.055 Sum_probs=67.4
Q ss_pred hhhHHHHHHHHHHhCCCeEEEEEecCCCC--cCC-H---HHHHHHHHHHHHc-CCcEEEEcCCchhhHHHHHHHHHcCCC
Q 020079 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSF--MIN-D---ELLIEGFKRCKSL-GALAMVHAENGDAVFEGQKRMIELGIT 254 (331)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~--~~~-~---~~l~~~~~~A~~~-g~~v~~H~e~~~~~~~~~~~~~~~G~~ 254 (331)
+...+..+++. +.|++.|.+......+. ..+ . +.+..+++..++. +.++.+=..+++..+.+. +.|..
T Consensus 24 ~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~~v~~aaL----~~g~~ 98 (258)
T cd00423 24 DKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVDTFNAEVAEAAL----KAGAD 98 (258)
T ss_pred HHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcHHHHHHHH----HhCCC
Confidence 34455556666 68888887643322111 111 2 3456667776655 888887777666655543 33311
Q ss_pred CcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC-------------------HHHHHHHHHHHHcCCC---EEE
Q 020079 255 GPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS-------------------MDAMEEIAKARKAGPN---FLN 312 (331)
Q Consensus 255 ~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~-------------------~~~~~~i~~~~~~Gi~---v~~ 312 (331)
..... ..+... .+.+.+++++|+++.+.|... ..-.+.++++++.|++ +.+
T Consensus 99 ---iINdi---s~~~~~-~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Iil 171 (258)
T cd00423 99 ---IINDV---SGGRGD-PEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIIL 171 (258)
T ss_pred ---EEEeC---CCCCCC-hHHHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 00000 000000 345678889999999999642 1122456778899974 566
Q ss_pred ec
Q 020079 313 TT 314 (331)
Q Consensus 313 ~~ 314 (331)
|.
T Consensus 172 DP 173 (258)
T cd00423 172 DP 173 (258)
T ss_pred eC
Confidence 53
No 285
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=60.70 E-value=1.2e+02 Score=29.36 Aligned_cols=108 Identities=15% Similarity=0.027 Sum_probs=60.6
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCC---cHHHHHHHHHHH----hccceeeccccccccCC-ChhhHHHHHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPING---SLTAGFEAYEKK----AKNSCMDYGFHMAITKW-DEVVSDEMEVMVK 193 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 193 (331)
.+++.+...+...+.+|+=-+-|-....+. ...+.+....+. .....-.-.+...++.. .++..+..+.+.
T Consensus 173 Lsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~eTG~~k~y~~NiT~~~~~em~~ra~~~~- 251 (468)
T PRK04208 173 LSAKNYGRVVYEALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAETGERKGHYLNVTAPTMEEMYKRAEFAK- 251 (468)
T ss_pred CCHHHHHHHHHHHHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHhhCCcceEEEecCCCCHHHHHHHHHHHH-
Confidence 567888888888899999888866543332 333333332222 21111111112223333 344445555554
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
+.|...+-+ ++ .......++.+.+.++..+++++.|-
T Consensus 252 e~G~~~~mv--~~---~~~G~~~l~~l~~~~~~~~l~IhaHr 288 (468)
T PRK04208 252 ELGSPIVMI--DV---VTAGWTALQSLREWCRDNGLALHAHR 288 (468)
T ss_pred HhCCCEEEE--ec---cccccHHHHHHHHhhhcCCcEEEecC
Confidence 567766533 21 12234568888888888899999994
No 286
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=60.67 E-value=1.2e+02 Score=26.86 Aligned_cols=184 Identities=12% Similarity=0.016 Sum_probs=95.6
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcC-CCCC-------cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVI-PING-------SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVK 193 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (331)
.+++++...+..+.+.|-+.+--+.- ..++ ...+.++..++..+...+............++..+.+..+
T Consensus 23 ~tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~Ttg~~~~~~~~~R~~~v~~~-- 100 (272)
T PF05853_consen 23 ITPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPTTGGGGGPDPEERLAHVEAW-- 100 (272)
T ss_dssp -SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEESSTTTTSGHHHHCTHHHHH--
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHHHhc--
Confidence 56888888888889999887653221 2211 2344455555554444444332221111112222223222
Q ss_pred HhCCCeEEEEE-----e-cCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccc------
Q 020079 194 EKGINSFKFFM-----A-YKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL------ 261 (331)
Q Consensus 194 ~~g~~~ik~~~-----~-~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~------ 261 (331)
..+...+-+ + ....+.-+.+.+.+.++.++++|++...=+.+...+... ..+.+.|+.....+..
T Consensus 101 --~pd~asl~~gs~n~~~~~~~~~n~~~~~~~~~~~~~e~Gi~pe~ev~d~~~l~~~-~~l~~~G~l~~p~~~~~vlG~~ 177 (272)
T PF05853_consen 101 --KPDMASLNPGSMNFGTRDRVYINTPADARELARRMRERGIKPEIEVFDPGHLRNA-RRLIEKGLLPGPLLVNFVLGVP 177 (272)
T ss_dssp ----SEEEEE-S-EEESGGCSEE---HHHHHHHHHHHHHTT-EEEEEESSHHHHHHH-HHHHHTTSS-SSEEEEEEES-T
T ss_pred --CCCeEEecccccccccCCceecCCHHHHHHHHHHHHHcCCeEEEEEEcHHHHHHH-HHHHHCCCCCCCeEEEEcccCC
Confidence 122222111 1 012233468899999999999999998878777766555 4467778875432221
Q ss_pred -cCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEec
Q 020079 262 -SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTT 314 (331)
Q Consensus 262 -~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~ 314 (331)
..|.. ...+...++.+.. +....++.. -......+..+...|-.|-++.
T Consensus 178 ~g~~~~--~~~l~~~l~~l~~-~~~w~v~~~-g~~~~~~~~~Ai~~GghvRVGl 227 (272)
T PF05853_consen 178 GGMPAT--PENLLAMLDMLPE-GAPWSVCGI-GRNQWPLLAAAIAMGGHVRVGL 227 (272)
T ss_dssp TS--S---HHHHHHHHHHHHH-TEEEEEEE--GGGHHHHHHHHHHTT-EEEEST
T ss_pred CCCCCC--HHHHHHHHHhcCC-CCcEEEEcc-chhhHHHHHHHHHcCCceEEec
Confidence 12222 2345555666665 555544443 3556678888888898877653
No 287
>PRK08227 autoinducer 2 aldolase; Validated
Probab=60.52 E-value=1.2e+02 Score=26.79 Aligned_cols=47 Identities=13% Similarity=0.017 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCCeEEEEEecCCCCc-CCHHHHHHHHHHHHHcCCcEEE
Q 020079 186 DEMEVMVKEKGINSFKFFMAYKGSFM-INDELLIEGFKRCKSLGALAMV 233 (331)
Q Consensus 186 ~~~~~~~~~~g~~~ik~~~~~~~~~~-~~~~~l~~~~~~A~~~g~~v~~ 233 (331)
..+++.+ +.|++.+.+.+.+.+... -.-+.+.++.+.|+++|+|+..
T Consensus 98 ~sVeeAv-rlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 98 VDMEDAV-RLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred ecHHHHH-HCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 3456666 789998877665542211 1123456788899999999877
No 288
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=60.40 E-value=1.2e+02 Score=26.85 Aligned_cols=109 Identities=10% Similarity=-0.064 Sum_probs=48.2
Q ss_pred CCChhhHHHHHHHHHhCCceEEecCcCCCCC---cHHH---HHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHH
Q 020079 121 SETIDDFFSGQAAALAGGTTMHIDFVIPING---SLTA---GFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKE 194 (331)
Q Consensus 121 ~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (331)
..+.+.+....+..+..||..+.-.+..+.. +..+ .++...+.... .+.+....+.. ...+..+..+.. ++
T Consensus 15 ~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~-~~~vi~gv~~~-s~~~~i~~a~~a-~~ 91 (285)
T TIGR00674 15 SVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNG-RVPVIAGTGSN-ATEEAISLTKFA-ED 91 (285)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCC-CCeEEEeCCCc-cHHHHHHHHHHH-HH
Confidence 3455556666666777888877744332221 2222 22222222111 11111111111 122333333333 36
Q ss_pred hCCCeEEEEEecCCCCcCCHHHH-HHHHHHHHHcCCcEEEE
Q 020079 195 KGINSFKFFMAYKGSFMINDELL-IEGFKRCKSLGALAMVH 234 (331)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l-~~~~~~A~~~g~~v~~H 234 (331)
.|++.+-+..-+ ....+++.+ +...+.++..++|+.+.
T Consensus 92 ~Gad~v~v~pP~--y~~~~~~~i~~~~~~i~~~~~~pi~lY 130 (285)
T TIGR00674 92 VGADGFLVVTPY--YNKPTQEGLYQHFKAIAEEVDLPIILY 130 (285)
T ss_pred cCCCEEEEcCCc--CCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 788877543221 112244444 33444556667888776
No 289
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=60.35 E-value=1.3e+02 Score=26.92 Aligned_cols=109 Identities=12% Similarity=-0.082 Sum_probs=52.8
Q ss_pred CCCChhhHHHHHHHHHhCCceEEecCcCCCCC---cHHH---HHHHHHHHh-ccceeeccccccccCCChhhHHHHHHHH
Q 020079 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPING---SLTA---GFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMV 192 (331)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~---~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (331)
+..+.+.+....+.++..||..+.-.++.+.. +..+ .++...+.. .+.++-. ..+ ....+..+..+. +
T Consensus 16 g~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~--gv~--~~t~~~i~~a~~-a 90 (289)
T cd00951 16 GSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLA--GAG--YGTATAIAYAQA-A 90 (289)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEE--ecC--CCHHHHHHHHHH-H
Confidence 34556666666777888999888755433322 2222 222222222 1222111 111 122333343333 3
Q ss_pred HHhCCCeEEEEEecCCCCcCCHHHHHH-HHHHHHHcCCcEEEEc
Q 020079 193 KEKGINSFKFFMAYKGSFMINDELLIE-GFKRCKSLGALAMVHA 235 (331)
Q Consensus 193 ~~~g~~~ik~~~~~~~~~~~~~~~l~~-~~~~A~~~g~~v~~H~ 235 (331)
++.|++.+-+.. |. -...+++.+.+ ..+.+...++|+.+..
T Consensus 91 ~~~Gad~v~~~p-P~-y~~~~~~~i~~~f~~v~~~~~~pi~lYn 132 (289)
T cd00951 91 EKAGADGILLLP-PY-LTEAPQEGLYAHVEAVCKSTDLGVIVYN 132 (289)
T ss_pred HHhCCCEEEECC-CC-CCCCCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 367888875432 21 11234555444 4445566688888773
No 290
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=59.71 E-value=62 Score=27.78 Aligned_cols=115 Identities=13% Similarity=-0.013 Sum_probs=62.5
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEE
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFK 201 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik 201 (331)
.+.++.....+.++.+|++.+--.. ...+..+.++.+.+.......+.....+.. .+ .+.++... +.|++.+
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~--~tp~a~~~i~~l~~~~~~~~p~~~vGaGTV-l~---~e~a~~a~-~aGA~Fi- 95 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTN--RGDFAHEVFAELVKYAAKELPGMILGVGSI-VD---AATAALYI-QLGANFI- 95 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeC--CCCcHHHHHHHHHHHHHhhCCCeEEeeEeC-cC---HHHHHHHH-HcCCCEE-
Confidence 4566777778888999999875221 112344555554332211111221112221 12 23445555 6788655
Q ss_pred EEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCccc
Q 020079 202 FFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 258 (331)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~ 258 (331)
++|. +++ .+++.|+++|+++.--+-++.|+... .+.|...-+.
T Consensus 96 --VsP~----~~~----~v~~~~~~~~i~~iPG~~TpsEi~~A----~~~Ga~~vKl 138 (222)
T PRK07114 96 --VTPL----FNP----DIAKVCNRRKVPYSPGCGSLSEIGYA----EELGCEIVKL 138 (222)
T ss_pred --ECCC----CCH----HHHHHHHHcCCCEeCCCCCHHHHHHH----HHCCCCEEEE
Confidence 3332 344 55677788999988777777777544 4556544433
No 291
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=59.70 E-value=1.1e+02 Score=25.90 Aligned_cols=64 Identities=25% Similarity=0.304 Sum_probs=36.9
Q ss_pred HHHHHHHHHhCCCeEEEEE-ecCCCCcCCHHHHHHHHHHHHHcCCcEEEE-cCC-chhhHHHHHHHHHcCCC
Q 020079 186 DEMEVMVKEKGINSFKFFM-AYKGSFMINDELLIEGFKRCKSLGALAMVH-AEN-GDAVFEGQKRMIELGIT 254 (331)
Q Consensus 186 ~~~~~~~~~~g~~~ik~~~-~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H-~e~-~~~~~~~~~~~~~~G~~ 254 (331)
++++.+. +.|++++-+.. +. ....+.+.++++++.|+ ++++..| +-+ ........+.+.+.|+.
T Consensus 76 ~dI~~~~-~~GadG~VfG~L~~--dg~iD~~~~~~Li~~a~--~~~~tFHRAfD~~~d~~~al~~L~~lG~~ 142 (201)
T PF03932_consen 76 EDIRMLR-ELGADGFVFGALTE--DGEIDEEALEELIEAAG--GMPVTFHRAFDEVPDPEEALEQLIELGFD 142 (201)
T ss_dssp HHHHHHH-HTT-SEEEE--BET--TSSB-HHHHHHHHHHHT--TSEEEE-GGGGGSSTHHHHHHHHHHHT-S
T ss_pred HHHHHHH-HcCCCeeEEEeECC--CCCcCHHHHHHHHHhcC--CCeEEEeCcHHHhCCHHHHHHHHHhcCCC
Confidence 3444444 68999875432 33 34578899999999886 9999999 422 22344445556666654
No 292
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=59.56 E-value=1.1e+02 Score=26.10 Aligned_cols=184 Identities=16% Similarity=0.065 Sum_probs=90.4
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccCCChhhHHH-HHHHHHHhCCCeE
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDE-MEVMVKEKGINSF 200 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i 200 (331)
.+.++.....+...+.||-.+--..........+.++...+......+.... ....+..+. +..+. ..|.+.+
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~-~~g~~~i 84 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPNARLQALC-----RANEEDIERAVEAAK-EAGIDII 84 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHSSEEEEEE-----ESCHHHHHHHHHHHH-HTTSSEE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcccccceee-----eehHHHHHHHHHhhH-hccCCEE
Confidence 4455665666777788988765321112223444555555444432222111 112222333 33333 6899998
Q ss_pred EEEEecCCC-----CcCC----HHHHHHHHHHHHHcCCcEEEEcCCc-----hhhHHHHHHHHHcCCCCcc---cccccC
Q 020079 201 KFFMAYKGS-----FMIN----DELLIEGFKRCKSLGALAMVHAENG-----DAVFEGQKRMIELGITGPE---GHALSR 263 (331)
Q Consensus 201 k~~~~~~~~-----~~~~----~~~l~~~~~~A~~~g~~v~~H~e~~-----~~~~~~~~~~~~~G~~~~~---~~~~~~ 263 (331)
.++...... ...+ .+.+.++++.+++.|..+...+++. +...+..+.+.+.|...-. ..+...
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~ 164 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTVGIMT 164 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCccCCcC
Confidence 887653210 0011 4566788999999999998887542 2233333445555653321 111112
Q ss_pred ChHHHHHHHHHHHHHHHh-cC-CCEE-EEeCCCHHHHHHHHHHHHcCCCEEEecCCc
Q 020079 264 PPLLEGEATTRAIRLAEF-VN-TPLY-VVHVMSMDAMEEIAKARKAGPNFLNTTIPL 317 (331)
Q Consensus 264 ~~~~e~~~i~~~~~l~~~-~g-~~~~-i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~ 317 (331)
| ..+.+.+...++ .+ .++. ..|+..+-+++-.-.+-+.|+.. ++++..
T Consensus 165 P-----~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~-id~t~~ 215 (237)
T PF00682_consen 165 P-----EDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADR-IDGTLG 215 (237)
T ss_dssp H-----HHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SE-EEEBGG
T ss_pred H-----HHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCE-EEccCc
Confidence 2 233334433333 23 3332 34666666666667777889876 455543
No 293
>PRK08444 hypothetical protein; Provisional
Probab=59.55 E-value=1.3e+02 Score=27.94 Aligned_cols=131 Identities=14% Similarity=0.096 Sum_probs=68.7
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCC-c---HHHHHHHHHHHhccceeeccccccc----cCCChhhHHHHHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPING-S---LTAGFEAYEKKAKNSCMDYGFHMAI----TKWDEVVSDEMEVMVK 193 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 193 (331)
.++|++...++.+...|+|.+.=.++..+. . ..+.++..++..+...+...-.... ....-...+.+.++.
T Consensus 80 ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~Lk- 158 (353)
T PRK08444 80 MSHEEILEIVKNSVKRGIKEVHIVSAHNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDML- 158 (353)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeccCCCCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHH-
Confidence 467888888888899999998744432222 2 2233333333222211111000000 000111223344444
Q ss_pred HhCCCeEEE----EEec-----CCCCcCCHHHHHHHHHHHHHcCCcE-----EEEcCCchhhHHHHHHHHHcCC
Q 020079 194 EKGINSFKF----FMAY-----KGSFMINDELLIEGFKRCKSLGALA-----MVHAENGDAVFEGQKRMIELGI 253 (331)
Q Consensus 194 ~~g~~~ik~----~~~~-----~~~~~~~~~~l~~~~~~A~~~g~~v-----~~H~e~~~~~~~~~~~~~~~G~ 253 (331)
++|.+.+-. ++++ ..+.-.+.+.+..+.+.|++.|+++ ..|.|+.++.-+....+.+.+.
T Consensus 159 eAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~sg~l~G~gEt~edrv~hl~~Lr~Lq~ 232 (353)
T PRK08444 159 EYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMSNATMLFGHIENREHRIDHMLRLRDLQD 232 (353)
T ss_pred HhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEecCCCHHHHHHHHHHHHHhcc
Confidence 667654311 0000 0122345688889999999999964 6688888776666655555444
No 294
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=59.31 E-value=1.6e+02 Score=27.90 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=8.7
Q ss_pred HHHHHHHHHhcCCCE
Q 020079 272 TTRAIRLAEFVNTPL 286 (331)
Q Consensus 272 i~~~~~l~~~~g~~~ 286 (331)
..+.++.+.++|+++
T Consensus 234 a~~Al~~L~~aGI~l 248 (417)
T TIGR03820 234 SKKALAKLADAGIPL 248 (417)
T ss_pred HHHHHHHHHHcCCEE
Confidence 444556666667653
No 295
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=59.13 E-value=1.2e+02 Score=26.13 Aligned_cols=49 Identities=12% Similarity=0.015 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhCCCeEEE-EEecCCCCc--CCHHHHHHHHHHHHHcCCcEEEEcC
Q 020079 185 SDEMEVMVKEKGINSFKF-FMAYKGSFM--INDELLIEGFKRCKSLGALAMVHAE 236 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~-~~~~~~~~~--~~~~~l~~~~~~A~~~g~~v~~H~e 236 (331)
.++++++. +.|.+.+.+ .++.+..+. ...+.++++.+.. .+.++.+|.-
T Consensus 22 ~~~~~~l~-~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~--~~~~lDvHLm 73 (228)
T PTZ00170 22 ADEAQDVL-SGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHL--PNTFLDCHLM 73 (228)
T ss_pred HHHHHHHH-HcCCCEEEEecccCccCCCcCcCHHHHHHHHhcC--CCCCEEEEEC
Confidence 34555555 677777643 234333332 3455555554321 1578888853
No 296
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=59.10 E-value=12 Score=27.42 Aligned_cols=20 Identities=35% Similarity=0.208 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 020079 5 MASAFTHQLTSVALLLLLLY 24 (331)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (331)
|..+.++++.++++++|+++
T Consensus 1 MaSK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLIS 20 (95)
T ss_pred CchhHHHHHHHHHHHHHHHH
Confidence 43343444444333333333
No 297
>PRK09234 fbiC FO synthase; Reviewed
Probab=58.82 E-value=81 Score=32.94 Aligned_cols=71 Identities=14% Similarity=-0.040 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhH-----------HHHHHHHHc
Q 020079 183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVF-----------EGQKRMIEL 251 (331)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~-----------~~~~~~~~~ 251 (331)
+..+.+++.. +.|+..+.+. +... +..+.+.+..+++..++..-.+++|+.++.++. +....+.+.
T Consensus 561 eI~~~a~ea~-~~G~tev~i~-gG~~-p~~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~~~e~l~~LkeA 637 (843)
T PRK09234 561 EVADRAWEAW-VAGATEVCMQ-GGIH-PELPGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLSIREWLTALREA 637 (843)
T ss_pred HHHHHHHHHH-HCCCCEEEEe-cCCC-CCcCHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3444455544 5788877654 3322 235677888888888887667888877654443 334567788
Q ss_pred CCCCc
Q 020079 252 GITGP 256 (331)
Q Consensus 252 G~~~~ 256 (331)
|+..-
T Consensus 638 GLds~ 642 (843)
T PRK09234 638 GLDTI 642 (843)
T ss_pred CcCcc
Confidence 87543
No 298
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=58.81 E-value=1.3e+02 Score=26.43 Aligned_cols=101 Identities=16% Similarity=0.030 Sum_probs=59.0
Q ss_pred hhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc-CCcEEEEcCCchhhHHHHHHHHHcCCCCccccc
Q 020079 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHAENGDAVFEGQKRMIELGITGPEGHA 260 (331)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~-g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~ 260 (331)
+...+..+++. +.|++.|.+...+. .....+++.+++...++. +.|+.+=..+.+..+...+.+ .|..- ..
T Consensus 26 d~~~~~A~~~~-~~GAdiIDIG~~~~--~~~~~ee~~r~v~~i~~~~~~piSIDT~~~~v~e~aL~~~--~G~~i---IN 97 (252)
T cd00740 26 DEALDVARQQV-EGGAQILDLNVDYG--GLDGVSAMKWLLNLLATEPTVPLMLDSTNWEVIEAGLKCC--QGKCV---VN 97 (252)
T ss_pred HHHHHHHHHHH-HCCCCEEEECCCCC--CCCHHHHHHHHHHHHHHhcCCcEEeeCCcHHHHHHHHhhC--CCCcE---EE
Confidence 34455566666 67999887755432 222366777887777665 889888777666665554332 13211 11
Q ss_pred ccCChHHHHHHHHHHHHHHHhcCCCEEEEeC
Q 020079 261 LSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (331)
Q Consensus 261 ~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~ 291 (331)
.......+ +...+.+.+++++|+++.+.|.
T Consensus 98 sIs~~~~~-e~~~~~~~~~~~~~~~vV~m~~ 127 (252)
T cd00740 98 SINLEDGE-ERFLKVARLAKEHGAAVVVLAF 127 (252)
T ss_pred eCCCCCCc-cccHHHHHHHHHhCCCEEEecc
Confidence 10000000 1244556778899999999997
No 299
>PRK08508 biotin synthase; Provisional
Probab=58.73 E-value=1.3e+02 Score=26.65 Aligned_cols=96 Identities=19% Similarity=0.028 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCccc--------ccccCChHHHHHHHHHHHHHHHhcCC
Q 020079 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG--------HALSRPPLLEGEATTRAIRLAEFVNT 284 (331)
Q Consensus 213 ~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~--------~~~~~~~~~e~~~i~~~~~l~~~~g~ 284 (331)
..+.+.++++..++.+..+.+|+.......+..+.+.+.|+..-.+ +....+ ........+.++.+++.|.
T Consensus 73 ~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~-~~~~~~~l~~i~~a~~~Gi 151 (279)
T PRK08508 73 KLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLETSKEFFPKICT-THTWEERFQTCENAKEAGL 151 (279)
T ss_pred cHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCCC-CCCHHHHHHHHHHHHHcCC
Confidence 3455566666666655445555432222334445555666533221 111111 1112334445566777775
Q ss_pred CE----EEEeCCCH-HHHHHHHHHHHcCCC
Q 020079 285 PL----YVVHVMSM-DAMEEIAKARKAGPN 309 (331)
Q Consensus 285 ~~----~i~H~~~~-~~~~~i~~~~~~Gi~ 309 (331)
++ .+.|.-+. +-++.+..+++.+..
T Consensus 152 ~v~sg~I~GlGEt~ed~~~~l~~lr~L~~~ 181 (279)
T PRK08508 152 GLCSGGIFGLGESWEDRISFLKSLASLSPH 181 (279)
T ss_pred eecceeEEecCCCHHHHHHHHHHHHcCCCC
Confidence 43 44444333 345567777777765
No 300
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=58.64 E-value=1e+02 Score=29.73 Aligned_cols=108 Identities=14% Similarity=0.046 Sum_probs=59.6
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCC---cHHHHHHHHHHH----hccceeecccccccc-CCChhhHHHHHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPING---SLTAGFEAYEKK----AKNSCMDYGFHMAIT-KWDEVVSDEMEVMVK 193 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 193 (331)
.+++.+...+.....+|+=-+-|-....+. ...+.+....+. .....-...+...++ ...++..+..+.+.
T Consensus 180 Lsp~~~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra~~a~- 258 (475)
T CHL00040 180 LSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMYKRAVFAR- 258 (475)
T ss_pred CCHHHHHHHHHHHHcCCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeeccCCCCHHHHHHHHHHHH-
Confidence 567788777788889998877765443322 334433333222 211111111122334 23344445554444
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
+.|...+-+ ++ ....-..++.+.+.|++.+++++.|-
T Consensus 259 e~G~~~~mv--~~---~~~G~~al~~l~~~~~~~~l~IhaHr 295 (475)
T CHL00040 259 ELGVPIVMH--DY---LTGGFTANTSLAHYCRDNGLLLHIHR 295 (475)
T ss_pred HcCCceEEE--ec---cccccchHHHHHHHhhhcCceEEecc
Confidence 677766532 22 12233458888888888899999994
No 301
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=57.99 E-value=1.5e+02 Score=27.05 Aligned_cols=77 Identities=13% Similarity=0.025 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcc--ccccc-----------------CChHHHHHHHH
Q 020079 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPE--GHALS-----------------RPPLLEGEATT 273 (331)
Q Consensus 213 ~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~--~~~~~-----------------~~~~~e~~~i~ 273 (331)
+.+...++++.|++.|+.+..=.-+...+... .+.+...-. ..... .+-..+...++
T Consensus 88 p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l----~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTGma~~~ei~ 163 (347)
T COG2089 88 PLEWHAQLKEYARKRGIIFFSSPFDLTAVDLL----ESLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTGMATIEEIE 163 (347)
T ss_pred CHHHHHHHHHHHHHcCeEEEecCCCHHHHHHH----HhcCCCeEEecCccccChHHHHHHHhcCCCEEEEcccccHHHHH
Confidence 55667788889999888877665444333322 222221111 00000 01122345577
Q ss_pred HHHHHHHhcCCC-EEEEeCCC
Q 020079 274 RAIRLAEFVNTP-LYVVHVMS 293 (331)
Q Consensus 274 ~~~~l~~~~g~~-~~i~H~~~ 293 (331)
+.+..+++.|.+ +.+-||++
T Consensus 164 ~av~~~r~~g~~~i~LLhC~s 184 (347)
T COG2089 164 EAVAILRENGNPDIALLHCTS 184 (347)
T ss_pred HHHHHHHhcCCCCeEEEEecC
Confidence 788888888877 77888876
No 302
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=57.87 E-value=74 Score=29.76 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=26.3
Q ss_pred CCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCcccc
Q 020079 283 NTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDS 320 (331)
Q Consensus 283 g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~ 320 (331)
|.++.+.||...+. +.+++++++|+.|. .||..+.
T Consensus 238 g~~~~~~H~~~~~~-~~~~~l~~~g~~v~--~~P~~~~ 272 (401)
T TIGR02967 238 GRRSVFAHCIHLSD-EECQRLAETGAAIA--HCPTSNL 272 (401)
T ss_pred CCCeEEEecccCCH-HHHHHHHHcCCeEE--EChHHHH
Confidence 45788899986554 67899999998766 7886553
No 303
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=57.65 E-value=1.3e+02 Score=26.05 Aligned_cols=46 Identities=13% Similarity=0.054 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhCCCeEEE-EEecCCCC--cCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 185 SDEMEVMVKEKGINSFKF-FMAYKGSF--MINDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~-~~~~~~~~--~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
.++++++. . |++.+.+ .++.+..+ .+.++.++++.+. .++++.+|.
T Consensus 18 ~~el~~l~-~-g~d~lH~DiMDG~FVPN~tfg~~~i~~ir~~---t~~~~DvHL 66 (229)
T PRK09722 18 KEQIEFLN-S-KADYFHIDIMDGHFVPNLTLSPFFVSQVKKL---ASKPLDVHL 66 (229)
T ss_pred HHHHHHHH-h-CCCEEEEecccCccCCCcccCHHHHHHHHhc---CCCCeEEEE
Confidence 34555554 4 7777653 34444433 3456666665432 478999994
No 304
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=57.54 E-value=1.7e+02 Score=27.61 Aligned_cols=39 Identities=13% Similarity=0.273 Sum_probs=28.4
Q ss_pred cCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079 282 VNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN 323 (331)
Q Consensus 282 ~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~ 323 (331)
.+-+..+.||...+. +.++.+++.|+.|. .||.+|..++
T Consensus 246 l~~~~~~~H~~~~~~-~e~~~l~~~g~~v~--~cP~sN~~L~ 284 (421)
T COG0402 246 LGSHTLLAHCVHLSE-EELELLAESGASVV--HCPRSNLKLG 284 (421)
T ss_pred CCCCeEEEEeccCCH-HHHHHHhhCCCeEE--ECcchhcccc
Confidence 345678899876655 45666668897777 8898887766
No 305
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=57.46 E-value=2.2e+02 Score=29.59 Aligned_cols=149 Identities=20% Similarity=0.221 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhccceeeccc----cccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcC
Q 020079 153 LTAGFEAYEKKAKNSCMDYGF----HMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228 (331)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g 228 (331)
-++.++.+++..++..+..-+ ..+....++...++..+...+.|++.+.+|-+.+ .-+.++-.++..++.|
T Consensus 596 PWeRL~~lRk~~PNvlfQMLLRgaN~VgY~nyPDnVi~~Fvkqaa~~GIDvFRiFDsLN-----wv~~M~vaidAV~e~g 670 (1149)
T COG1038 596 PWERLERLRKAVPNVLFQMLLRGANGVGYKNYPDNVIREFVKQAAKSGIDVFRIFDSLN-----WVEQMRVAIDAVREAG 670 (1149)
T ss_pred HHHHHHHHHHhCCchHHHHHhccccccCcCCCchHHHHHHHHHHHhcCccEEEeehhhc-----chhhhhhHHHHHHhcC
Confidence 345555555554443222111 2234445666667766666578999998875322 4577888888889998
Q ss_pred CcEEEE-cCCchhh---------HHHH---HHHHHcCCCC--cccc-cccCChHHHHHHHHHHH-HHHHhcCCCEEEE-e
Q 020079 229 ALAMVH-AENGDAV---------FEGQ---KRMIELGITG--PEGH-ALSRPPLLEGEATTRAI-RLAEFVNTPLYVV-H 290 (331)
Q Consensus 229 ~~v~~H-~e~~~~~---------~~~~---~~~~~~G~~~--~~~~-~~~~~~~~e~~~i~~~~-~l~~~~g~~~~i~-H 290 (331)
...-.- |.+.+.. ..+. ..+.+.|... -+.. +...| .+..+++ .+-...+.++|+. |
T Consensus 671 kv~EatiCYTGDildp~r~kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP-----~AA~~Li~aLr~~~dlPIHlHTH 745 (1149)
T COG1038 671 KVAEATICYTGDILDPGRKKYTLDYYVKLAKELEKAGAHILAIKDMAGLLKP-----AAAYRLISALRETVDLPIHLHTH 745 (1149)
T ss_pred CeEEEEEEeccccCCCCcccccHHHHHHHHHHHHhcCCcEEEehhhhhccCH-----HHHHHHHHHHHHhcCCceEEecc
Confidence 665443 4433221 1111 2244444311 1111 01122 2222333 4445568898876 5
Q ss_pred CCCHHHHHHHHHHHHcCCCEE
Q 020079 291 VMSMDAMEEIAKARKAGPNFL 311 (331)
Q Consensus 291 ~~~~~~~~~i~~~~~~Gi~v~ 311 (331)
=+++.++..+..+.++|+.+.
T Consensus 746 DTsG~~~at~~aA~~AGvDiv 766 (1149)
T COG1038 746 DTSGNGVATYLAAVEAGVDIV 766 (1149)
T ss_pred CCCccHHHHHHHHHHcCCchh
Confidence 566778888888999998763
No 306
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=57.28 E-value=78 Score=29.53 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc----C-CcEEEEcCCchhh
Q 020079 183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL----G-ALAMVHAENGDAV 241 (331)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~----g-~~v~~H~e~~~~~ 241 (331)
+.++.+.+...+.|...+-. ...+.+.|.+.++++..+++ + ..+-+|.|.+...
T Consensus 74 ~~l~~i~~~~~~~GtTsfLp-----T~iT~~~e~i~~al~~~~e~~~~~ga~ilGiHLEGP~ls 132 (380)
T COG1820 74 ETLETMAEAHLRHGTTSFLP-----TLITASLEKIKAALRAIREAIAKGGAQILGIHLEGPFLS 132 (380)
T ss_pred HHHHHHHHHhhhcCeeeeee-----ecccCCHHHHHHHHHHHHHHHhccCCceEEEEeecCccC
Confidence 44555655554567655421 12234566666555544333 3 3467788887543
No 307
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=57.22 E-value=1.5e+02 Score=27.65 Aligned_cols=36 Identities=22% Similarity=0.090 Sum_probs=20.7
Q ss_pred HHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEE
Q 020079 274 RAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFL 311 (331)
Q Consensus 274 ~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~ 311 (331)
+.++.+.+.|+.+.+.|. ....+.+.++.++|....
T Consensus 181 ~~i~~l~~~gi~vs~GHs--~A~~~~~~~a~~~Ga~~~ 216 (380)
T TIGR00221 181 ELIRHLKDAGIIVSAGHT--NATYELAKAAFKAGATHA 216 (380)
T ss_pred HHHHHHHHCCeEEEeeCC--CCCHHHHHHHHHcCCCee
Confidence 455566666666666663 223356666666666543
No 308
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=57.12 E-value=1.4e+02 Score=26.57 Aligned_cols=122 Identities=14% Similarity=-0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCceEEe-cCcCCCCCcHHHHHHHHHHHhccceeeccccccccCCChh----------hHHHHHHHHHHhC
Q 020079 128 FSGQAAALAGGTTMHI-DFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEV----------VSDEMEVMVKEKG 196 (331)
Q Consensus 128 ~~~~~~~l~~GvTtv~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~g 196 (331)
....+.++.+|+|++. |..........+......+......+.+..-.+.....++ ..++..+..++.|
T Consensus 87 ~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tg 166 (282)
T TIGR01859 87 YESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETG 166 (282)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHC
Q ss_pred CCeEEEEEec-CCCCcC-CHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHH
Q 020079 197 INSFKFFMAY-KGSFMI-NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMI 249 (331)
Q Consensus 197 ~~~ik~~~~~-~~~~~~-~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~ 249 (331)
++.+.+.+++ ++.+.- ..-.++.+-+..+..++|+..|-.+.-..+...+...
T Consensus 167 vD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~ 221 (282)
T TIGR01859 167 VDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIK 221 (282)
T ss_pred cCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHH
No 309
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=56.90 E-value=1.3e+02 Score=26.08 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHhCCCeEEE
Q 020079 183 VVSDEMEVMVKEKGINSFKF 202 (331)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~ 202 (331)
+..+.++++. +.|+.++++
T Consensus 85 ~~~~~v~~~~-~~G~~gv~i 103 (243)
T cd00377 85 NVARTVRELE-EAGAAGIHI 103 (243)
T ss_pred HHHHHHHHHH-HcCCEEEEE
Confidence 4455566666 689988875
No 310
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=56.77 E-value=61 Score=28.72 Aligned_cols=77 Identities=14% Similarity=0.162 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEE--EEecCC-----CCcCCHHHHHHHHHHHH
Q 020079 153 LTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKF--FMAYKG-----SFMINDELLIEGFKRCK 225 (331)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~--~~~~~~-----~~~~~~~~l~~~~~~A~ 225 (331)
....++..++..+..+...++..+.....++..+.++++. ..|++.+.+ |+.|.. ..++++++|+..-+.|.
T Consensus 199 SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~Ev~e~m~DLr-~~gvdilTiGQYlqPS~~HlpV~ryv~PeeF~~~~~~a~ 277 (306)
T COG0320 199 SLSLLERAKELGPDIPTKSGLMVGLGETDEEVIEVMDDLR-SAGVDILTIGQYLQPSRKHLPVQRYVTPEEFDELEEVAE 277 (306)
T ss_pred HHHHHHHHHHhCCCcccccceeeecCCcHHHHHHHHHHHH-HcCCCEEEeccccCCccccCCceeccCHHHHHHHHHHHH
Confidence 4455566666666666666667777777778888888887 788887644 333311 13568999999999998
Q ss_pred HcCCc
Q 020079 226 SLGAL 230 (331)
Q Consensus 226 ~~g~~ 230 (331)
+.|..
T Consensus 278 ~~GF~ 282 (306)
T COG0320 278 EMGFL 282 (306)
T ss_pred Hccch
Confidence 87764
No 311
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=56.38 E-value=1.6e+02 Score=26.98 Aligned_cols=118 Identities=9% Similarity=-0.037 Sum_probs=60.3
Q ss_pred HHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecCCC
Q 020079 131 QAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS 209 (331)
Q Consensus 131 ~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~ 209 (331)
.+.+..+|+..++-....... ...+.++..++.+..... .+.... ..+.+.+.++.+.+.+.|++.+-+ ... .
T Consensus 94 l~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~--~l~~a~-~~~~e~l~~~a~~~~~~Ga~~i~i--~DT-~ 167 (337)
T PRK08195 94 LKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVG--FLMMSH-MAPPEKLAEQAKLMESYGAQCVYV--VDS-A 167 (337)
T ss_pred HHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEE--EEEecc-CCCHHHHHHHHHHHHhCCCCEEEe--CCC-C
Confidence 566788899987733211111 233344444444322221 111111 223333444444443678887633 222 2
Q ss_pred CcCCHHHHHHHHHHHHHc---CCcEEEEcCCchhhHHHH-HHHHHcCCC
Q 020079 210 FMINDELLIEGFKRCKSL---GALAMVHAENGDAVFEGQ-KRMIELGIT 254 (331)
Q Consensus 210 ~~~~~~~l~~~~~~A~~~---g~~v~~H~e~~~~~~~~~-~~~~~~G~~ 254 (331)
-...++.+.+++...++. ++++.+|+.+........ ....+.|..
T Consensus 168 G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~ 216 (337)
T PRK08195 168 GALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGAT 216 (337)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCC
Confidence 235788888888887765 688999986654433222 223455653
No 312
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=56.13 E-value=1.1e+02 Score=28.59 Aligned_cols=107 Identities=12% Similarity=0.043 Sum_probs=53.5
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCC---cHHHHHHHHHHHhcc----ceeeccccccccCCChhhHHHHHHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPING---SLTAGFEAYEKKAKN----SCMDYGFHMAITKWDEVVSDEMEVMVKE 194 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (331)
.+++.+.......+.+|+--+.|.+..... ...+.++...+.... ..-...+....+...++..+..+... +
T Consensus 143 ld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~~~e~i~~a~~a~-~ 221 (367)
T cd08205 143 LSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITGDPDELRRRADRAV-E 221 (367)
T ss_pred CCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCCHHHHHHHHHHHH-H
Confidence 567778777888899999998877654433 333433333222211 01111111122222234444444443 6
Q ss_pred hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 020079 195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN 237 (331)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~ 237 (331)
.|.+.+-+.... .....++.+.+ +.+++++.|-..
T Consensus 222 ~Gad~vmv~~~~-----~g~~~~~~l~~---~~~lpi~~H~a~ 256 (367)
T cd08205 222 AGANALLINPNL-----VGLDALRALAE---DPDLPIMAHPAF 256 (367)
T ss_pred cCCCEEEEeccc-----ccccHHHHHHh---cCCCeEEEccCc
Confidence 788876443211 11122333332 349999999543
No 313
>PRK13404 dihydropyrimidinase; Provisional
Probab=55.82 E-value=2e+02 Score=27.80 Aligned_cols=101 Identities=15% Similarity=0.078 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHHcCCcE-EEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEe-
Q 020079 213 NDELLIEGFKRCKSLGALA-MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH- 290 (331)
Q Consensus 213 ~~~~l~~~~~~A~~~g~~v-~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H- 290 (331)
..+.+.+.++.|++.|.++ .+|+.....++.. +.+.+.|+.-. ....|...- .-++.+......|....+.+
T Consensus 219 E~~~v~~~~~la~~~g~~~hi~Hvs~~~~~~~i-~~~k~~g~~vt---~e~~ph~L~--l~~~~~~~~~~~g~~~k~~Pp 292 (477)
T PRK13404 219 EREATHRAIALAELVDVPILIVHVSGREAAEQI-RRARGRGLKIF---AETCPQYLF--LTAEDLDRPGMEGAKYICSPP 292 (477)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHH-HHHHHCCCeEE---EEEChhhhc--cCHHHhcCccccCCceEECCC
Confidence 4566888999999999999 6698776665444 33455564211 111111100 00111111111355544543
Q ss_pred CCCHHHHHHHHHHHHcCCC--EEEecCCccc
Q 020079 291 VMSMDAMEEIAKARKAGPN--FLNTTIPLCD 319 (331)
Q Consensus 291 ~~~~~~~~~i~~~~~~Gi~--v~~~~~p~~~ 319 (331)
.-+.+..+.+-++.+.|.- |+.|.+||..
T Consensus 293 lr~~~d~~aL~~~l~~G~id~i~sDHap~~~ 323 (477)
T PRK13404 293 PRDKANQEAIWNGLADGTFEVFSSDHAPFRF 323 (477)
T ss_pred CCChHHHHHHHHHHhCCCceEEecCCCCCCc
Confidence 2234444555555556642 5678999973
No 314
>PRK06256 biotin synthase; Validated
Probab=55.70 E-value=83 Score=28.68 Aligned_cols=38 Identities=8% Similarity=-0.017 Sum_probs=20.0
Q ss_pred HHHHHHHHHhcCCCE----EEEeCCC-HHHHHHHHHHHHcCCC
Q 020079 272 TTRAIRLAEFVNTPL----YVVHVMS-MDAMEEIAKARKAGPN 309 (331)
Q Consensus 272 i~~~~~l~~~~g~~~----~i~H~~~-~~~~~~i~~~~~~Gi~ 309 (331)
..+.++.+++.|.++ .+.+.-+ .+-.+.+..+++.++.
T Consensus 189 ~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~~~ 231 (336)
T PRK06256 189 RIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFFLKELDAD 231 (336)
T ss_pred HHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHHHHHhCCCC
Confidence 445566666676542 2223222 2334566667777754
No 315
>PRK07583 cytosine deaminase-like protein; Validated
Probab=55.34 E-value=1.2e+02 Score=28.82 Aligned_cols=68 Identities=15% Similarity=0.167 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcC---CcEEEEcCCc-----hhhHHHHHHHHHcCC
Q 020079 183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG---ALAMVHAENG-----DAVFEGQKRMIELGI 253 (331)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g---~~v~~H~e~~-----~~~~~~~~~~~~~G~ 253 (331)
+.+..+-+++++.|.. +.+..+.... .....++.+.+.+.+.| ..+..|+... .+..+..+.+.+.|+
T Consensus 212 ~~l~~i~~lA~~~G~~-v~vH~~E~~~--~~~~~l~~~~~~~~~~G~~~~v~i~H~~~l~~~~~~~~~~~i~~la~~gv 287 (438)
T PRK07583 212 AQLDRLFRLARERGLD-LDLHVDETGD--PASRTLKAVAEAALRNGFEGKVTCGHCCSLAVQPEEQAQATIALVAEAGI 287 (438)
T ss_pred HHHHHHHHHHHHhCCC-cEEeECCCCC--chHHHHHHHHHHHHHhCCCCCEEEEeccchhcCCHHHHHHHHHHHHHcCC
Confidence 4455555555455653 3334332221 11233555666665654 4467786432 222344556666665
No 316
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=55.13 E-value=1.5e+02 Score=26.04 Aligned_cols=151 Identities=11% Similarity=-0.020 Sum_probs=0.0
Q ss_pred HHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecC
Q 020079 129 SGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK 207 (331)
Q Consensus 129 ~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~ 207 (331)
...+.++.+|+..++-.....+. ...+.++..++.+ ..+.+.........++...+.++.+. +.|++.|.+ .+
T Consensus 89 ~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G--~~v~~~~~~~~~~~~~~~~~~~~~~~-~~G~d~i~l---~D 162 (263)
T cd07943 89 DDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLG--MDVVGFLMMSHMASPEELAEQAKLME-SYGADCVYV---TD 162 (263)
T ss_pred HHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCC--CeEEEEEEeccCCCHHHHHHHHHHHH-HcCCCEEEE---cC
Q ss_pred CCCcCCHHHHHHHHHHHHHc-CC-cEEEEcCCchhhHHHH-HHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCC
Q 020079 208 GSFMINDELLIEGFKRCKSL-GA-LAMVHAENGDAVFEGQ-KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT 284 (331)
Q Consensus 208 ~~~~~~~~~l~~~~~~A~~~-g~-~v~~H~e~~~~~~~~~-~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~ 284 (331)
..-...++.+..+++..++. +. ++.+|+.+........ ....+.|..--.....+.....-..+++..+..+...|.
T Consensus 163 T~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd~s~~GlG~~aGN~~~E~lv~~L~~~g~ 242 (263)
T cd07943 163 SAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATRIDGSLAGLGAGAGNTPLEVLVAVLERMGI 242 (263)
T ss_pred CCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCCCEEEeecccccCCcCCccHHHHHHHHHhcCC
Q ss_pred C
Q 020079 285 P 285 (331)
Q Consensus 285 ~ 285 (331)
.
T Consensus 243 ~ 243 (263)
T cd07943 243 E 243 (263)
T ss_pred C
No 317
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=54.85 E-value=1.1e+02 Score=29.00 Aligned_cols=108 Identities=12% Similarity=0.004 Sum_probs=59.1
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCC---cHHHHHHHHHHH----hccceeeccccccccCCChhhHHHHHHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPING---SLTAGFEAYEKK----AKNSCMDYGFHMAITKWDEVVSDEMEVMVKE 194 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (331)
.+++.+.......+.+|+=-+-|-....+. ...+.+....+. .....-...+...++...++..+..+... +
T Consensus 144 lsp~~~a~~~y~~~~GGvD~iKDDE~l~~q~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT~~~~em~~ra~~a~-e 222 (412)
T cd08213 144 LSPEEHAEVAYEALVGGVDLVKDDENLTSQPFNRFEERAKESLKARDKAEAETGERKAYLANITAPVREMERRAELVA-D 222 (412)
T ss_pred CCHHHHHHHHHHHHhcCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEecCCHHHHHHHHHHHH-H
Confidence 567888778888899998777765443322 334433333222 21111111122223333344444444444 5
Q ss_pred hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
.|.+.+-+ ++ ....-..++.+.+.+++.+++++.|-
T Consensus 223 ~G~~~~mv--~~---~~~G~~~l~~l~~~~~~~~l~ihaHr 258 (412)
T cd08213 223 LGGKYVMI--DV---VVAGWSALQYLRDLAEDYGLAIHAHR 258 (412)
T ss_pred hCCCeEEe--ec---cccChHHHHHHHHhccccCeEEEECC
Confidence 77765532 21 22234567777777777899999994
No 318
>PRK12677 xylose isomerase; Provisional
Probab=54.56 E-value=1.9e+02 Score=27.14 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCeEEEEEecCCCCcCCH----HHHHHHHHHHHHcCCcEEE
Q 020079 186 DEMEVMVKEKGINSFKFFMAYKGSFMIND----ELLIEGFKRCKSLGALAMV 233 (331)
Q Consensus 186 ~~~~~~~~~~g~~~ik~~~~~~~~~~~~~----~~l~~~~~~A~~~g~~v~~ 233 (331)
+.+..+. +.|..++.+......++..+. ..++++.+..+++|+.+.+
T Consensus 35 E~v~~~a-~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~ 85 (384)
T PRK12677 35 EAVHKLA-ELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVPM 85 (384)
T ss_pred HHHHHHH-HhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEE
Confidence 3444444 789988876532111121221 2477888888999999764
No 319
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=54.47 E-value=1.5e+02 Score=26.01 Aligned_cols=121 Identities=13% Similarity=0.070 Sum_probs=66.1
Q ss_pred hhhHHHHHHHHHHhCCCeEEEEEe---cCCCCcCCHHHHHH---HHHHHHHc-CCcEEEEcCCchhhHHHHHHHHHcCCC
Q 020079 182 EVVSDEMEVMVKEKGINSFKFFMA---YKGSFMINDELLIE---GFKRCKSL-GALAMVHAENGDAVFEGQKRMIELGIT 254 (331)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~---~~~~~~~~~~~l~~---~~~~A~~~-g~~v~~H~e~~~~~~~~~~~~~~~G~~ 254 (331)
++..+...++. +.|++.|.+... +........+++++ +++..++. +.|+.+=..+++..+.+. +.|..
T Consensus 24 ~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~~~v~e~al----~~G~~ 98 (257)
T cd00739 24 DKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVDTFRAEVARAAL----EAGAD 98 (257)
T ss_pred HHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCCCHHHHHHHH----HhCCC
Confidence 44555666666 678888876431 11111122344443 45666655 888887776666555443 23421
Q ss_pred CcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC-------------------HHHHHHHHHHHHcCC---CEEE
Q 020079 255 GPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS-------------------MDAMEEIAKARKAGP---NFLN 312 (331)
Q Consensus 255 ~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~-------------------~~~~~~i~~~~~~Gi---~v~~ 312 (331)
-- ... ..+... .+.+.+++++|+.+.+.|... ..-.+.++.+++.|+ +|..
T Consensus 99 iI---Ndi---sg~~~~-~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~ 171 (257)
T cd00739 99 II---NDV---SGGSDD-PAMLEVAAEYGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIIL 171 (257)
T ss_pred EE---EeC---CCCCCC-hHHHHHHHHcCCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 11 000 000000 345677888999999998631 012245677889998 5776
Q ss_pred ec
Q 020079 313 TT 314 (331)
Q Consensus 313 ~~ 314 (331)
|.
T Consensus 172 DP 173 (257)
T cd00739 172 DP 173 (257)
T ss_pred ec
Confidence 53
No 320
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=54.04 E-value=1.6e+02 Score=26.08 Aligned_cols=72 Identities=13% Similarity=-0.043 Sum_probs=45.1
Q ss_pred cccCCChhhHHHHHHHHHHhCCCeEEE-----EEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHH
Q 020079 176 AITKWDEVVSDEMEVMVKEKGINSFKF-----FMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKR 247 (331)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~g~~~ik~-----~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~ 247 (331)
++...+.+...+..+..++.|++.+.. -.+|........+-++.+.+.++++|+++..-.-+...++...++
T Consensus 52 PCsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtEvm~~~~~e~~~~y 128 (286)
T COG2876 52 PCSVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPVVTEVMDVRDVEAAAEY 128 (286)
T ss_pred CcccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccccCHHHHHHHHHHHHHcCCeeEEEecCHHHHHHHHhh
Confidence 333344555555656565677765432 112222223467889999999999999999988777666655443
No 321
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=53.43 E-value=92 Score=27.68 Aligned_cols=112 Identities=10% Similarity=-0.044 Sum_probs=58.5
Q ss_pred CChhhHHHHHHHHHhCCceEEe-cCcCC--------------CCCcHHHHHHHHHHHhcccee--eccccccccCCChhh
Q 020079 122 ETIDDFFSGQAAALAGGTTMHI-DFVIP--------------INGSLTAGFEAYEKKAKNSCM--DYGFHMAITKWDEVV 184 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~-d~~~~--------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 184 (331)
.+.+....-...|.+.|+-.+. |-+-. ......+.++..++.+-...+ .............+
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~- 107 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQ- 107 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCC-
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHH-
Confidence 4556666666778889998765 54332 111456666666665533221 11110111111112
Q ss_pred HHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 185 SDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
+++.-...++.|+.++|+-+-.. ..+...+..+.+++.|.++++.|..|-
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~~~-d~Q~~v~~y~~i~~~AA~~~LmvnfHg 157 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFMDR-DDQEMVNWYEDILEDAAEYKLMVNFHG 157 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE--SS-TSHHHHHHHHHHHHHHHHTT-EEEETT
T ss_pred HHHHHHHHHHcCCCEEeeCcCCC-CCHHHHHHHHHHHHHHHHcCcEEEecC
Confidence 23333444478999999733211 111123556789999999999999994
No 322
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=53.22 E-value=1.7e+02 Score=26.15 Aligned_cols=110 Identities=10% Similarity=-0.072 Sum_probs=51.8
Q ss_pred CCCChhhHHHHHHHHHh-CCceEEecCcCCCCC---cHHHH---HHHHHHHhccceeeccccccccCCChhhHHHHHHHH
Q 020079 120 GSETIDDFFSGQAAALA-GGTTMHIDFVIPING---SLTAG---FEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMV 192 (331)
Q Consensus 120 ~~~~~~~~~~~~~~~l~-~GvTtv~d~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (331)
+..+.+.+....+..+. .||..+.-.+..+.. +..+. ++...+... ..+......+.. ...+..+..+. +
T Consensus 19 g~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~-~~~~viagvg~~-~t~~ai~~a~~-a 95 (293)
T PRK04147 19 GQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAK-GKVKLIAQVGSV-NTAEAQELAKY-A 95 (293)
T ss_pred CCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhC-CCCCEEecCCCC-CHHHHHHHHHH-H
Confidence 44556667677777888 898888754432221 22222 222222211 111111111111 12233333333 3
Q ss_pred HHhCCCeEEEEEecCCCCcCCHHH-HHHHHHHHHHcCCcEEEE
Q 020079 193 KEKGINSFKFFMAYKGSFMINDEL-LIEGFKRCKSLGALAMVH 234 (331)
Q Consensus 193 ~~~g~~~ik~~~~~~~~~~~~~~~-l~~~~~~A~~~g~~v~~H 234 (331)
++.|++++-+...+. ...+++. ++...+.+...++|+.+.
T Consensus 96 ~~~Gad~v~v~~P~y--~~~~~~~l~~~f~~va~a~~lPv~iY 136 (293)
T PRK04147 96 TELGYDAISAVTPFY--YPFSFEEICDYYREIIDSADNPMIVY 136 (293)
T ss_pred HHcCCCEEEEeCCcC--CCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 367888876543211 1223344 444555566678888887
No 323
>PRK07572 cytosine deaminase; Validated
Probab=53.21 E-value=1.6e+02 Score=27.78 Aligned_cols=77 Identities=18% Similarity=0.060 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCC--CEEEEeCCCH------HHHHHHHHHHHcCCCEE
Q 020079 240 AVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT--PLYVVHVMSM------DAMEEIAKARKAGPNFL 311 (331)
Q Consensus 240 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~--~~~i~H~~~~------~~~~~i~~~~~~Gi~v~ 311 (331)
+.....+...+.|+.-. .|........ ...++.......+.|. ++++.|+... ...+.+++++++|+.|.
T Consensus 192 ~l~~~~~~A~~~g~~v~-~H~~e~~~~~-~~~~~~~~~~~~~~G~~~~v~~~H~~~l~~~~~~~~~~~~~~la~~g~~vv 269 (426)
T PRK07572 192 SVRLLCEIAAERGLRVD-MHCDESDDPL-SRHIETLAAETQRLGLQGRVAGSHLTSMHSMDNYYVSKLIPLMAEAGVNAI 269 (426)
T ss_pred HHHHHHHHHHHcCCCeE-EEECCCCChh-HHHHHHHHHHHHHhCCCCCEEEEccchhhcCCHHHHHHHHHHHHHcCCeEE
Confidence 44444455666665432 2321111111 1233334444445553 6888999642 33467899999998877
Q ss_pred EecCCcccc
Q 020079 312 NTTIPLCDS 320 (331)
Q Consensus 312 ~~~~p~~~~ 320 (331)
.||..+.
T Consensus 270 --~~P~~n~ 276 (426)
T PRK07572 270 --ANPLINI 276 (426)
T ss_pred --ECchhhh
Confidence 6786654
No 324
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=52.85 E-value=1.7e+02 Score=26.24 Aligned_cols=109 Identities=10% Similarity=-0.131 Sum_probs=50.1
Q ss_pred CCCChhhHHHHHHHHHhCCceEEecCcCCCCC---cHHHH---HHHHHHHh-ccceeeccccccccCCChhhHHHHHHHH
Q 020079 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPING---SLTAG---FEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMV 192 (331)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~---~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (331)
+..+.+.+....+..+.+||..++-.++.+.. +..+. ++...+.. .+.++-. ..+ ....+..+..+...
T Consensus 23 g~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~--gv~--~~t~~~i~~~~~a~ 98 (303)
T PRK03620 23 GSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIA--GAG--GGTAQAIEYAQAAE 98 (303)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEE--ecC--CCHHHHHHHHHHHH
Confidence 34555666666777788888887754433221 22222 22222221 1111111 111 12233444443333
Q ss_pred HHhCCCeEEEEEecCCCCcCCHHHHHH-HHHHHHHcCCcEEEEc
Q 020079 193 KEKGINSFKFFMAYKGSFMINDELLIE-GFKRCKSLGALAMVHA 235 (331)
Q Consensus 193 ~~~g~~~ik~~~~~~~~~~~~~~~l~~-~~~~A~~~g~~v~~H~ 235 (331)
+.|++.+-+.. |. -...+++.+.. ..+.+...++|+.+..
T Consensus 99 -~~Gadav~~~p-P~-y~~~~~~~i~~~f~~va~~~~lpi~lYn 139 (303)
T PRK03620 99 -RAGADGILLLP-PY-LTEAPQEGLAAHVEAVCKSTDLGVIVYN 139 (303)
T ss_pred -HhCCCEEEECC-CC-CCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 67888774422 21 11224444444 4444555678877763
No 325
>PLN02417 dihydrodipicolinate synthase
Probab=52.50 E-value=1.7e+02 Score=25.98 Aligned_cols=25 Identities=12% Similarity=-0.071 Sum_probs=15.4
Q ss_pred CChhhHHHHHHHHHhCCceEEecCc
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFV 146 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~ 146 (331)
.+.+.+....+..+..|+..+.-.+
T Consensus 19 iD~~~~~~~i~~l~~~Gv~Gi~~~G 43 (280)
T PLN02417 19 FDLEAYDSLVNMQIENGAEGLIVGG 43 (280)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECc
Confidence 4455555556666777777776443
No 326
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=51.86 E-value=1.3e+02 Score=25.56 Aligned_cols=110 Identities=14% Similarity=0.179 Sum_probs=64.6
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEE
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFK 201 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik 201 (331)
.++|+.....++.+.+|++++---. ......+.++...+..++..+.-+ +-.+. +.++++. +.|.+.+
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl--~sp~a~e~I~~l~~~~p~~lIGAG-----TVL~~---~q~~~a~-~aGa~fi- 89 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITL--RTPAALEAIRALAKEFPEALIGAG-----TVLNP---EQARQAI-AAGAQFI- 89 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEec--CCCCHHHHHHHHHHhCcccEEccc-----cccCH---HHHHHHH-HcCCCEE-
Confidence 4566666777888999999986221 122445666666655543322211 11222 3455555 6787655
Q ss_pred EEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcc
Q 020079 202 FFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPE 257 (331)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~ 257 (331)
++| .+++ ++++.|.++++++.--+.++.|+... .+.|....+
T Consensus 90 --VsP----~~~~----ev~~~a~~~~ip~~PG~~TptEi~~A----le~G~~~lK 131 (211)
T COG0800 90 --VSP----GLNP----EVAKAANRYGIPYIPGVATPTEIMAA----LELGASALK 131 (211)
T ss_pred --ECC----CCCH----HHHHHHHhCCCcccCCCCCHHHHHHH----HHcChhhee
Confidence 333 2454 45667788999998777777776544 445655444
No 327
>PLN02444 HMP-P synthase
Probab=51.75 E-value=2.5e+02 Score=27.72 Aligned_cols=63 Identities=16% Similarity=0.221 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCC---------H-------HHHHHHHHHHHcCCCEEEe---cCCccccchhhhhhhc
Q 020079 269 GEATTRAIRLAEFVNTPLYVVHVMS---------M-------DAMEEIAKARKAGPNFLNT---TIPLCDSCSNIIRMVE 329 (331)
Q Consensus 269 ~~~i~~~~~l~~~~g~~~~i~H~~~---------~-------~~~~~i~~~~~~Gi~v~~~---~~p~~~~~~~~~~~~~ 329 (331)
+...++.+++++++++.+.+.-.-- . .-=++.++++++|+.|-++ .-|-+.--.||..+.+
T Consensus 360 Ye~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~tLGELtkrA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~ 439 (642)
T PLN02444 360 YEHWDDILDICNQYDIALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWEKDVQVMNEGPGHVPLHKIPENMQKQLE 439 (642)
T ss_pred HHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEECCCcCcHHHHHHHHHHHHH
Confidence 3456777888888877665553210 0 1114567778888887654 3344444445554444
Q ss_pred cC
Q 020079 330 FC 331 (331)
Q Consensus 330 ~~ 331 (331)
.|
T Consensus 440 lC 441 (642)
T PLN02444 440 WC 441 (642)
T ss_pred hh
Confidence 44
No 328
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=51.57 E-value=2.2e+02 Score=27.08 Aligned_cols=36 Identities=19% Similarity=0.425 Sum_probs=26.6
Q ss_pred CCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccc
Q 020079 283 NTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSC 321 (331)
Q Consensus 283 g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~ 321 (331)
+.+..+.|+...+. +.++++++.|+.++ .||..+..
T Consensus 263 ~~~~~~~H~~~l~~-~~~~~la~~g~~v~--~~P~~~~~ 298 (451)
T PRK08203 263 GPDVWLAHCVHLDD-AEIARLARTGTGVA--HCPCSNMR 298 (451)
T ss_pred CCCeEEEEEeCCCH-HHHHHHHhcCCeEE--ECcHHhhh
Confidence 45778889876554 67889999998776 78876543
No 329
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=51.51 E-value=1.7e+02 Score=25.82 Aligned_cols=22 Identities=9% Similarity=-0.144 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHcCCcEEEEc
Q 020079 214 DELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 214 ~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
.+.++.+.+.+++.|+++..=.
T Consensus 77 ~~gl~~l~~~~~~~Gl~~~te~ 98 (266)
T PRK13398 77 EEGLKILKEVGDKYNLPVVTEV 98 (266)
T ss_pred HHHHHHHHHHHHHcCCCEEEee
Confidence 4555555666666666655443
No 330
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=51.32 E-value=1.7e+02 Score=28.16 Aligned_cols=107 Identities=15% Similarity=0.062 Sum_probs=57.8
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCC---cHHHHHHHHHH----Hhccceeecccccccc-CCChhhHHHHHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPING---SLTAGFEAYEK----KAKNSCMDYGFHMAIT-KWDEVVSDEMEVMVK 193 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 193 (331)
.+++.+...+.....+|+--+-|-....+. ...+.+....+ ......-...+...++ ...++..+..+...
T Consensus 158 lsp~~~A~~~~~~~~GGvD~IKDDE~l~~~~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra~~a~- 236 (450)
T cd08212 158 LSAKNYGRVVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVAEAVNKAQAETGEVKGHYLNVTAGTMEEMYKRAEFAK- 236 (450)
T ss_pred CCHHHHHHHHHHHHccCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeccccCCCHHHHHHHHHHHH-
Confidence 567777777788889998877765433322 33333333222 2222111111222333 22344444444444
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
+.|...+-+ +. .. .-..++.+.+.|++.+++++.|.
T Consensus 237 ~~G~~~~mv--~~---~~-G~~~l~~l~~~a~~~~l~IhaHr 272 (450)
T cd08212 237 ELGSPIIMH--DL---LT-GFTAIQSLAKWCRDNGMLLHLHR 272 (450)
T ss_pred HhCCCeEee--ec---cc-ccchHHHHHHHhhhcCceEEecc
Confidence 567765432 21 11 23457888888888999999994
No 331
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=51.25 E-value=1.8e+02 Score=26.02 Aligned_cols=109 Identities=6% Similarity=-0.046 Sum_probs=57.3
Q ss_pred ChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHH-HHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccc
Q 020079 181 DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELL-IEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGH 259 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l-~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~ 259 (331)
+.+..+.+.+.+++.+...|- ..++........+.+ ..+...|++.++||.+|..-....+.. .+..+.|+.+-=.=
T Consensus 27 n~e~~~avi~AAee~~sPvIl-q~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i-~~ai~~GFtSVM~D 104 (286)
T PRK12738 27 NAETIQAILEVCSEMRSPVIL-AGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDI-RRKVHAGVRSAMID 104 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEE-EcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH-HHHHHcCCCeEeec
Confidence 445566666666555655442 122222222344443 345567888899999997333333333 33456777542111
Q ss_pred cccCChHHHHHHHHHHHHHHHhcCCCE--EEEeC
Q 020079 260 ALSRPPLLEGEATTRAIRLAEFVNTPL--YVVHV 291 (331)
Q Consensus 260 ~~~~~~~~e~~~i~~~~~l~~~~g~~~--~i~H~ 291 (331)
+...|-..-....++.++++...|+.+ .+.|+
T Consensus 105 gS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~i 138 (286)
T PRK12738 105 GSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRL 138 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEee
Confidence 112332222334577888888888653 34454
No 332
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=51.24 E-value=1.2e+02 Score=26.69 Aligned_cols=93 Identities=16% Similarity=0.113 Sum_probs=54.9
Q ss_pred ChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHHHHHHHcCCCCcccc
Q 020079 181 DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGH 259 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~~~~~~~G~~~~~~~ 259 (331)
.++..+...+++++.|+.++|+ . +.+++...++.+.+.++|+..|. -+++..... .|. .
T Consensus 89 ~~~av~~a~r~~~~aGa~aVki--E-------d~~~~~~~I~al~~agipV~gHiGL~pq~~~~~------gg~-----~ 148 (254)
T cd06557 89 PEQALRNAARLMKEAGADAVKL--E-------GGAEVAETIRALVDAGIPVMGHIGLTPQSVNQL------GGY-----K 148 (254)
T ss_pred HHHHHHHHHHHHHHhCCeEEEE--c-------CcHHHHHHHHHHHHcCCCeeccccccceeeecc------CCc-----e
Confidence 4555677777885699999875 2 22466677788889999999996 333322110 000 0
Q ss_pred cccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH
Q 020079 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM 294 (331)
Q Consensus 260 ~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~ 294 (331)
..+++.. +.+.+-+......+.|+-..+..+...
T Consensus 149 ~~grt~~-~a~~~i~ra~a~~~AGA~~i~lE~v~~ 182 (254)
T cd06557 149 VQGKTEE-EAERLLEDALALEEAGAFALVLECVPA 182 (254)
T ss_pred eccCCHH-HHHHHHHHHHHHHHCCCCEEEEcCCCH
Confidence 0112222 123344455666778988777777653
No 333
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=51.19 E-value=1.9e+02 Score=26.08 Aligned_cols=110 Identities=10% Similarity=-0.006 Sum_probs=57.4
Q ss_pred CCCChhhHHHHHHHHHhCCceEEecCcCCCCC---cHHH---HHHHHHHHh-ccceeeccccccccCCChhhHHHHHHHH
Q 020079 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPING---SLTA---GFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMV 192 (331)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~---~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (331)
|..+.+.+....+..+.+||-.++-.++.+.. +..+ .++...+.. .+.++-. +....+.+..-++.+.+
T Consensus 20 g~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpvia----G~g~~~t~eai~lak~a 95 (299)
T COG0329 20 GSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIA----GVGSNSTAEAIELAKHA 95 (299)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEE----ecCCCcHHHHHHHHHHH
Confidence 44566777777888899998888755544332 2222 223333322 2222211 11112222223334444
Q ss_pred HHhCCCeEEEEEecCCCCcC-CHHHHHHHHHHHHHcCCcEEEEc
Q 020079 193 KEKGINSFKFFMAYKGSFMI-NDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 193 ~~~g~~~ik~~~~~~~~~~~-~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
++.|++++-+...+- ... .++.++.....+...++|+..-.
T Consensus 96 ~~~Gad~il~v~PyY--~k~~~~gl~~hf~~ia~a~~lPvilYN 137 (299)
T COG0329 96 EKLGADGILVVPPYY--NKPSQEGLYAHFKAIAEAVDLPVILYN 137 (299)
T ss_pred HhcCCCEEEEeCCCC--cCCChHHHHHHHHHHHHhcCCCEEEEe
Confidence 478999886543221 112 34455556667777789888773
No 334
>PLN02858 fructose-bisphosphate aldolase
Probab=50.86 E-value=1.9e+02 Score=32.27 Aligned_cols=70 Identities=23% Similarity=0.283 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCCCeEEEEEe-cCCC-----CcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCC
Q 020079 185 SDEMEVMVKEKGINSFKFFMA-YKGS-----FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITG 255 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~-~~~~-----~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~ 255 (331)
.++..+++++.|++.+-+.++ -|+. +..+.+.++++.+...+.++|+.+|-.+.-. ++..+...+.|+..
T Consensus 1252 p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~-~~~~~~ai~~Gi~K 1327 (1378)
T PLN02858 1252 VDQAKEFIDETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHGASGLP-ESLIKECIENGVRK 1327 (1378)
T ss_pred HHHHHHHHHhcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeCCCCCC-HHHHHHHHHcCCeE
Confidence 466777776679988766543 2333 3456778888877776668999999644322 22234556666643
No 335
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=50.81 E-value=1.8e+02 Score=27.68 Aligned_cols=108 Identities=14% Similarity=0.029 Sum_probs=58.9
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCC---cHHHHHHHHHHH----hccceeeccccccccCC-ChhhHHHHHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPING---SLTAGFEAYEKK----AKNSCMDYGFHMAITKW-DEVVSDEMEVMVK 193 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 193 (331)
.+++++...+...+.+|+=-+-|-....+. ...+.+....+. .....-...+...++.. .++..+..+...
T Consensus 145 lsp~~~a~~~y~~~~GGiD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~~~~em~~ra~~~~- 223 (414)
T cd08206 145 LSPKEYARVVYEALRGGLDFVKDDENQNSQPFMRFEDRILFVAEAMDKAEAETGEAKGHYLNITADTPEEMIKRAEFAK- 223 (414)
T ss_pred CCHHHHHHHHHHHHhcCCcccccCccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEeccCCCcHHHHHHHHHHHH-
Confidence 567888888888899998877765433322 334443333322 21111111122223333 344444444444
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
+.|...+-+ ++ .......++.+.+.+.+.+++++.|-
T Consensus 224 ~~G~~~~mv--~~---~~~G~~~l~~l~~~~~~~~l~ih~Hr 260 (414)
T cd08206 224 ELGSVIVMV--DG---VTAGWTAIQSARRWCPDNGLALHAHR 260 (414)
T ss_pred HhCCcEEEE--ee---ecccHHHHHHHHHhccccCeEEEEcc
Confidence 677765533 21 12234567777777767899999994
No 336
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=50.80 E-value=1.7e+02 Score=27.17 Aligned_cols=104 Identities=10% Similarity=0.009 Sum_probs=54.1
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCC---cHHHHHHHHHHHhcc----ceeeccccccccCCChhhHHHHHHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPING---SLTAGFEAYEKKAKN----SCMDYGFHMAITKWDEVVSDEMEVMVKE 194 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (331)
.+++.+.......+.+|+--+-|-....+. ...+.+....+...+ ..-...+...++...++..+..+.+. +
T Consensus 138 L~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nita~~~em~~ra~~a~-~ 216 (364)
T cd08210 138 LSAAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPNVTGPPTQLLERARFAK-E 216 (364)
T ss_pred CCHHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEecCCCHHHHHHHHHHHH-H
Confidence 567888777888889999988776543332 344444433332211 11111122223333334444444444 6
Q ss_pred hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcC-CcEEEE
Q 020079 195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG-ALAMVH 234 (331)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g-~~v~~H 234 (331)
.|.+.+-+... ...-..++.+ +++.+ ++++.|
T Consensus 217 ~Ga~~vMv~~~-----~~G~~~~~~l---~~~~~~l~i~aH 249 (364)
T cd08210 217 AGAGGVLIAPG-----LTGLDTFREL---AEDFDFLPILAH 249 (364)
T ss_pred cCCCEEEeecc-----cchHHHHHHH---HhcCCCcEEEEc
Confidence 78877643221 1122233333 45677 999999
No 337
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=50.70 E-value=1.9e+02 Score=25.94 Aligned_cols=28 Identities=11% Similarity=-0.059 Sum_probs=18.2
Q ss_pred CCCChhhHHHHHHHHHhCCceEEecCcC
Q 020079 120 GSETIDDFFSGQAAALAGGTTMHIDFVI 147 (331)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~ 147 (331)
|..+.+.+....+..+..||..++-.+.
T Consensus 16 g~iD~~~l~~lv~~~~~~Gv~gi~v~Gs 43 (294)
T TIGR02313 16 GDIDEEALRELIEFQIEGGSHAISVGGT 43 (294)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcc
Confidence 3345566666667778888888774443
No 338
>PRK06886 hypothetical protein; Validated
Probab=50.56 E-value=57 Score=29.88 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=25.4
Q ss_pred CCEEEEeCCCHH------HHHHHHHHHHcCCCEEEecCCccc
Q 020079 284 TPLYVVHVMSMD------AMEEIAKARKAGPNFLNTTIPLCD 319 (331)
Q Consensus 284 ~~~~i~H~~~~~------~~~~i~~~~~~Gi~v~~~~~p~~~ 319 (331)
.++.++||+.-. ..+.+++++++|+.|. +||..+
T Consensus 207 grV~~sH~~~L~~~~~~~~~~~i~~La~agi~Vv--~~P~sn 246 (329)
T PRK06886 207 GRVVAIHGISIGAHSKEYRYRLYQKMREADMMVI--ACPMAW 246 (329)
T ss_pred CCEEEEEeccccCcChhhHHHHHHHHHHcCCeEE--ECchhh
Confidence 589999997532 2347899999998888 677654
No 339
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=50.32 E-value=2e+02 Score=26.24 Aligned_cols=88 Identities=14% Similarity=0.059 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHh-cCCCEEEEeCCC
Q 020079 215 ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEF-VNTPLYVVHVMS 293 (331)
Q Consensus 215 ~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~-~g~~~~i~H~~~ 293 (331)
+.+.+.++.+.+.+..+. -+..-+..+...+++.+.|.........+ ...+.++..+.++.+.. .+..+|.|....
T Consensus 179 ~~i~e~~~~~~~~~~~Fl-NiNELE~sE~N~~~l~~~gy~~~~~~~~a--v~GS~E~~Lk~l~~~~~~~~l~vH~Css~~ 255 (353)
T COG2108 179 EAILEFAKALDENGLDFL-NINELEFSENNYENLLERGYKISDDGSSA--VAGSLEAALKVLKWAEENWDLTVHYCSSKF 255 (353)
T ss_pred HHHHHHHHHHHhccccee-eeeeeeeccchHHHHHhcCceeccCCccc--ccchHHHHHHHHHHHhcccCceEEECchhh
Confidence 344555555555554432 11112222223344455554332222111 11123344445555544 355666666555
Q ss_pred HHHHHHHHHHHH
Q 020079 294 MDAMEEIAKARK 305 (331)
Q Consensus 294 ~~~~~~i~~~~~ 305 (331)
.+.++.-.++++
T Consensus 256 KDavQ~r~Rl~r 267 (353)
T COG2108 256 KDAVQLRNRLKR 267 (353)
T ss_pred hHHHHHHHHHHH
Confidence 555555444443
No 340
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=50.05 E-value=42 Score=31.97 Aligned_cols=38 Identities=13% Similarity=0.200 Sum_probs=28.6
Q ss_pred cCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 282 VNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 282 ~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
.+.++.++||...+. +.++.+++.|+.|+ .||.+|..+
T Consensus 253 l~~~~~~~H~~~~~~-~d~~~la~~g~~v~--~~P~sn~~l 290 (442)
T PRK07203 253 LGEKTLAAHCIYLSD-EEIDLLKETDTFVV--HNPESNMGN 290 (442)
T ss_pred CCCCcEEEEeecCCH-HHHHHHHhcCCeEE--ECchhhhhc
Confidence 356788999986655 66888899998776 789877543
No 341
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=49.73 E-value=2e+02 Score=26.08 Aligned_cols=109 Identities=13% Similarity=0.027 Sum_probs=60.0
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCC---cHHHHHHHHHHHh----ccceeeccccccccCC-ChhhHHHHHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPING---SLTAGFEAYEKKA----KNSCMDYGFHMAITKW-DEVVSDEMEVMVK 193 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 193 (331)
.+++.+...+.....+|+--+-|-....+. ...+.+....+.. ....-...+...++.. .++..+..+...
T Consensus 27 lsp~~~a~~~y~~a~GG~D~IKDDE~l~~q~f~p~~eRv~~~~~a~~~a~~eTG~~~ly~~NiT~~~~~em~~ra~~a~- 105 (309)
T PF00016_consen 27 LSPEELAELAYEFALGGVDFIKDDENLANQPFCPFEERVPACMEAVDRAEEETGEKKLYAANITADTPDEMIERAEYAK- 105 (309)
T ss_dssp S-HHHHHHHHHHHHHTTSSEEEE-TT-SSBTTBEHHHHHHHHHHHHHHHHHHHSS--EEEEEE-SSSHHHHHHHHHHHH-
T ss_pred ecccchhhHHHhhhhcccceecccccccCcccccHhHhHHhhhhhhhccccccceecceecccccccHHHHHHhhhhhh-
Confidence 568888888888899999988876543332 3444443333222 1111111122233322 244444444444
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcC
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE 236 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e 236 (331)
+.|.+.+-+ ++ ....-..++.+.+.++..+++++.|..
T Consensus 106 ~~G~~~vmv--~~---~~~G~~~~~~l~~~~~~~~~~ih~H~A 143 (309)
T PF00016_consen 106 EAGANAVMV--NV---LTAGFSALQSLAEDARDNGLPIHAHRA 143 (309)
T ss_dssp HHTGSEEEE--EH---HHHCHHHHHHHHHHHHHHTSEEEEETT
T ss_pred hhccchhhc--cc---ccccccccchhhhhhcccceeeeeccc
Confidence 678876633 21 112346778888899888999999954
No 342
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=49.70 E-value=1.9e+02 Score=25.73 Aligned_cols=109 Identities=10% Similarity=-0.068 Sum_probs=50.9
Q ss_pred CCCChhhHHHHHHHHHhC-CceEEecCcCCCCC---cHHHH---HHHHHHHhccceeeccccccccC-CChhhHHHHHHH
Q 020079 120 GSETIDDFFSGQAAALAG-GTTMHIDFVIPING---SLTAG---FEAYEKKAKNSCMDYGFHMAITK-WDEVVSDEMEVM 191 (331)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~-GvTtv~d~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 191 (331)
+..+.+.+....+.++.. |+..+.-.+..+.. +..+. ++...+... ..+.. ..+... ...+..+..+ .
T Consensus 16 g~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~-~~~~v--iagv~~~~~~~ai~~a~-~ 91 (288)
T cd00954 16 GEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAK-GKVTL--IAHVGSLNLKESQELAK-H 91 (288)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-CCCeE--EeccCCCCHHHHHHHHH-H
Confidence 345556666667777888 88888755433221 22222 222222211 11111 111211 1223333333 3
Q ss_pred HHHhCCCeEEEEEecCCCCcCCHHHHH-HHHHHHHHc-CCcEEEE
Q 020079 192 VKEKGINSFKFFMAYKGSFMINDELLI-EGFKRCKSL-GALAMVH 234 (331)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~-~~~~~A~~~-g~~v~~H 234 (331)
+++.|++.+-+.. |. ....+++.+. ..-+.++.. ++|+.+.
T Consensus 92 a~~~Gad~v~~~~-P~-y~~~~~~~i~~~~~~v~~a~~~lpi~iY 134 (288)
T cd00954 92 AEELGYDAISAIT-PF-YYKFSFEEIKDYYREIIAAAASLPMIIY 134 (288)
T ss_pred HHHcCCCEEEEeC-CC-CCCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 3367888775432 21 1123444444 444556667 7888876
No 343
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=49.42 E-value=1.9e+02 Score=25.79 Aligned_cols=109 Identities=11% Similarity=-0.087 Sum_probs=52.5
Q ss_pred CCCChhhHHHHHHHHHhCCceEEecCcCCCCC---cHHH---HHHHHHHHh-ccceeeccccccccCCChhhHHHHHHHH
Q 020079 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPING---SLTA---GFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMV 192 (331)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~---~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (331)
+..+.+.+....+..+..||..+.-.+..+.. +..+ .++...+.. .+.++-. ..+. ...+..+..+..
T Consensus 21 g~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~--gv~~--~t~~ai~~a~~a- 95 (296)
T TIGR03249 21 GSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYT--GVGG--NTSDAIEIARLA- 95 (296)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEE--ecCc--cHHHHHHHHHHH-
Confidence 44566667777777888999888744432221 2222 222222221 1222211 2221 233444444333
Q ss_pred HHhCCCeEEEEEecCCCCcCCHHHHH-HHHHHHHHcCCcEEEEc
Q 020079 193 KEKGINSFKFFMAYKGSFMINDELLI-EGFKRCKSLGALAMVHA 235 (331)
Q Consensus 193 ~~~g~~~ik~~~~~~~~~~~~~~~l~-~~~~~A~~~g~~v~~H~ 235 (331)
++.|++.+-+.. |. -...+++.+. ...+.+...++|+....
T Consensus 96 ~~~Gadav~~~p-P~-y~~~s~~~i~~~f~~v~~a~~~pvilYn 137 (296)
T TIGR03249 96 EKAGADGYLLLP-PY-LINGEQEGLYAHVEAVCESTDLGVIVYQ 137 (296)
T ss_pred HHhCCCEEEECC-CC-CCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 367888774432 21 1123444443 34445555678877663
No 344
>PLN02417 dihydrodipicolinate synthase
Probab=49.37 E-value=1.9e+02 Score=25.65 Aligned_cols=61 Identities=7% Similarity=0.004 Sum_probs=34.9
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc---CCcEEEEcC--CchhhHHHHHHHHHcCCC
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL---GALAMVHAE--NGDAVFEGQKRMIELGIT 254 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~e--~~~~~~~~~~~~~~~G~~ 254 (331)
+.|++++-+..+.......+.++-+++++.+.+. .+++.+++. +..+.-+..+...+.|..
T Consensus 33 ~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gad 98 (280)
T PLN02417 33 ENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMH 98 (280)
T ss_pred HcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCC
Confidence 5677777443333334456777777766655443 367778853 344444444556677764
No 345
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=49.30 E-value=1.1e+02 Score=22.96 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=28.7
Q ss_pred HHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCch
Q 020079 188 MEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD 239 (331)
Q Consensus 188 ~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~ 239 (331)
+++.+++.|...+.+=+. ....+.+.+.+..+.-.+...|+.+||.+..
T Consensus 49 ~~~~a~~~Gl~y~~iPv~---~~~~~~~~v~~f~~~l~~~~~Pvl~hC~sG~ 97 (110)
T PF04273_consen 49 EAAAAEALGLQYVHIPVD---GGAITEEDVEAFADALESLPKPVLAHCRSGT 97 (110)
T ss_dssp HHHHHHHCT-EEEE-------TTT--HHHHHHHHHHHHTTTTSEEEE-SCSH
T ss_pred HHHHHHHcCCeEEEeecC---CCCCCHHHHHHHHHHHHhCCCCEEEECCCCh
Confidence 445555667765432222 2345788888888888888889999996654
No 346
>PRK08185 hypothetical protein; Provisional
Probab=49.29 E-value=1.1e+02 Score=27.28 Aligned_cols=54 Identities=9% Similarity=0.027 Sum_probs=29.0
Q ss_pred ChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 181 DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
+.+..+.+.+.+++.+...|- .+++........+...-+.+.|++..+||.+|.
T Consensus 22 n~e~~~avi~AAee~~sPvIl-~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~lHL 75 (283)
T PRK08185 22 DSCFLRAVVEEAEANNAPAII-AIHPNELDFLGDNFFAYVRERAKRSPVPFVIHL 75 (283)
T ss_pred CHHHHHHHHHHHHHhCCCEEE-EeCcchhhhccHHHHHHHHHHHHHCCCCEEEEC
Confidence 445555555666455554442 222222222344544455667777788888886
No 347
>COG4939 Major membrane immunogen, membrane-anchored lipoprotein [Function unknown]
Probab=49.27 E-value=53 Score=25.28 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=13.3
Q ss_pred eeeEEEeCCEEEEeeC
Q 020079 70 IADVYVEDGIVVAVQP 85 (331)
Q Consensus 70 ~~~v~i~~g~I~~ig~ 85 (331)
...|.|+||+|+++.-
T Consensus 49 f~~iti~dGKiv~~~y 64 (147)
T COG4939 49 FVTITIQDGKIVACTY 64 (147)
T ss_pred eEEEEEeCCEEEEEEe
Confidence 5689999999998754
No 348
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=49.19 E-value=2.3e+02 Score=26.56 Aligned_cols=52 Identities=12% Similarity=0.002 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHhCCCeEEEEEecCCCCcCCH----HHHHHHHHHHHHcCCcEEEEc
Q 020079 183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMIND----ELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~----~~l~~~~~~A~~~g~~v~~H~ 235 (331)
+..+.+.++. +.|.+++.+....--+...+. ..++++.+..+++|+.+.+.+
T Consensus 33 ~~~e~i~~la-~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~ 88 (382)
T TIGR02631 33 DPVEAVHKLA-ELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPMVT 88 (382)
T ss_pred CHHHHHHHHH-HhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEEee
Confidence 3445566666 789998865421101122222 235778888899999987764
No 349
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=49.11 E-value=2e+02 Score=25.77 Aligned_cols=109 Identities=12% Similarity=0.120 Sum_probs=58.7
Q ss_pred ChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHH-HHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccc
Q 020079 181 DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLI-EGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGH 259 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~-~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~ 259 (331)
+-+..+.+.+.+++.+...|- ...+........+.+. .+...|++.++||.+|..-....+.. .+..+.|+.+-=.=
T Consensus 27 n~e~~~avi~AAe~~~sPvIl-~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lHLDH~~~~e~i-~~Ai~~GftSVM~D 104 (283)
T PRK07998 27 NLETTISILNAIERSGLPNFI-QIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLHLDHGKTFEDV-KQAVRAGFTSVMID 104 (283)
T ss_pred CHHHHHHHHHHHHHhCCCEEE-ECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEECcCCCCHHHH-HHHHHcCCCEEEEe
Confidence 344555555555455554432 1122212223444444 46667888999999997333333333 33457777542111
Q ss_pred cccCChHHHHHHHHHHHHHHHhcCCCE--EEEeC
Q 020079 260 ALSRPPLLEGEATTRAIRLAEFVNTPL--YVVHV 291 (331)
Q Consensus 260 ~~~~~~~~e~~~i~~~~~l~~~~g~~~--~i~H~ 291 (331)
+...|...-....++..+++...|+.+ .+.|.
T Consensus 105 gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~v 138 (283)
T PRK07998 105 GAALPFEENIAFTKEAVDFAKSYGVPVEAELGAI 138 (283)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccC
Confidence 112333333344578889999999765 55565
No 350
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=49.02 E-value=2.1e+02 Score=26.17 Aligned_cols=153 Identities=11% Similarity=-0.022 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEec
Q 020079 128 FSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206 (331)
Q Consensus 128 ~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~ 206 (331)
....+.+..+|+..++-....... ...+.++..++.+ ..+...+.......++...+..+.+. +.|++.+ ++..
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G--~~v~~~l~~s~~~~~e~l~~~a~~~~-~~Ga~~i--~i~D 164 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELG--MDTVGFLMMSHMTPPEKLAEQAKLME-SYGADCV--YIVD 164 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcC--CeEEEEEEcccCCCHHHHHHHHHHHH-hcCCCEE--EEcc
Q ss_pred CCCCcCCHHHHHHHHHHHHHcC--CcEEEEc-CCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcC
Q 020079 207 KGSFMINDELLIEGFKRCKSLG--ALAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283 (331)
Q Consensus 207 ~~~~~~~~~~l~~~~~~A~~~g--~~v~~H~-e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g 283 (331)
..-...+.+.-+.+-..-+..+ +++.+|+ ++....-.......+.|..--.....+.....-...++..+..+...|
T Consensus 165 T~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G~G~~aGN~~~E~lv~~l~~~g 244 (333)
T TIGR03217 165 SAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRIDASLRGLGAGAGNAPLEVFVAVLDRLG 244 (333)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCCEEEeecccccccccCccHHHHHHHHHhcC
Q ss_pred CC
Q 020079 284 TP 285 (331)
Q Consensus 284 ~~ 285 (331)
..
T Consensus 245 ~~ 246 (333)
T TIGR03217 245 WN 246 (333)
T ss_pred CC
No 351
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=48.85 E-value=1.8e+02 Score=28.19 Aligned_cols=98 Identities=14% Similarity=0.089 Sum_probs=55.4
Q ss_pred HHHHHHHHhCCceEEe-cCcCCCCCcHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEec
Q 020079 128 FSGQAAALAGGTTMHI-DFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206 (331)
Q Consensus 128 ~~~~~~~l~~GvTtv~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~ 206 (331)
......++..|+..+. |..........+.++..++..+...+ ..+. -...+..+.+. +.|++.+|+.+++
T Consensus 229 ~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v----~agn----v~t~~~a~~l~-~aGad~v~vgig~ 299 (479)
T PRK07807 229 AAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPI----VAGN----VVTAEGTRDLV-EAGADIVKVGVGP 299 (479)
T ss_pred HHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeE----Eeec----cCCHHHHHHHH-HcCCCEEEECccC
Confidence 3445667788998876 65443333555666666655433111 1111 11234455666 7899999987776
Q ss_pred CCCCc---------CCHHHHHHHHHHHHHcCCcEEEE
Q 020079 207 KGSFM---------INDELLIEGFKRCKSLGALAMVH 234 (331)
Q Consensus 207 ~~~~~---------~~~~~l~~~~~~A~~~g~~v~~H 234 (331)
..... .....+.++.+.|++++.|+..-
T Consensus 300 gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ 336 (479)
T PRK07807 300 GAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWAD 336 (479)
T ss_pred CcccccccccCCchhHHHHHHHHHHHHHhcCCcEEec
Confidence 32211 12344556666666889888654
No 352
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=48.07 E-value=2e+02 Score=25.63 Aligned_cols=109 Identities=6% Similarity=-0.180 Sum_probs=48.8
Q ss_pred CCChhhHHHHHHHHHhCC-ceEEecCcCCCCC---cHHHHH---HHHHHHhccceeeccccccccCCChhhHHHHHHHHH
Q 020079 121 SETIDDFFSGQAAALAGG-TTMHIDFVIPING---SLTAGF---EAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVK 193 (331)
Q Consensus 121 ~~~~~~~~~~~~~~l~~G-vTtv~d~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (331)
..+.+.+....+..+..| +..+.-.++.+.. +..+.. +...+... ..+.+....+.. ...+..+..+. ++
T Consensus 17 ~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~-~~~pvi~gv~~~-~t~~~i~la~~-a~ 93 (290)
T TIGR00683 17 TINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK-DQIALIAQVGSV-NLKEAVELGKY-AT 93 (290)
T ss_pred CcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhC-CCCcEEEecCCC-CHHHHHHHHHH-HH
Confidence 345556666667778888 8887755433322 222222 22222211 111111111111 12333333333 33
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHH-HHHHHHHc-CCcEEEE
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIE-GFKRCKSL-GALAMVH 234 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~-~~~~A~~~-g~~v~~H 234 (331)
+.|++++-+.. |. -...+++.+.. ..+.+... ++|+.+.
T Consensus 94 ~~Gad~v~v~~-P~-y~~~~~~~i~~yf~~v~~~~~~lpv~lY 134 (290)
T TIGR00683 94 ELGYDCLSAVT-PF-YYKFSFPEIKHYYDTIIAETGGLNMIVY 134 (290)
T ss_pred HhCCCEEEEeC-Cc-CCCCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 67888775532 21 12234444444 44444555 6777765
No 353
>PRK07360 FO synthase subunit 2; Reviewed
Probab=47.75 E-value=2.4e+02 Score=26.28 Aligned_cols=129 Identities=16% Similarity=0.054 Sum_probs=67.6
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCC-c----HHHHHHHHHHHhccceeecccccc-----cc-CCChhhHHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPING-S----LTAGFEAYEKKAKNSCMDYGFHMA-----IT-KWDEVVSDEMEV 190 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~ 190 (331)
.+.+++...++.+...|++.+.=.++..+. . ..+.++..++..+. +......+ .. .......+.+++
T Consensus 91 ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~--i~i~a~s~~ei~~~~~~~G~~~~e~l~~ 168 (371)
T PRK07360 91 LTIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPD--IHLHAFSPMEVYFAAREDGLSYEEVLKA 168 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCC--cceeeCCHHHHHHHHhhcCCCHHHHHHH
Confidence 467888888888899999998744332222 2 22333333332111 11110000 00 000112344566
Q ss_pred HHHHhCCCeEEEEEe----c-----CCCCcCCHHHHHHHHHHHHHcCCcE-----EEEcCCchhhHHHHHHHHHcCC
Q 020079 191 MVKEKGINSFKFFMA----Y-----KGSFMINDELLIEGFKRCKSLGALA-----MVHAENGDAVFEGQKRMIELGI 253 (331)
Q Consensus 191 ~~~~~g~~~ik~~~~----~-----~~~~~~~~~~l~~~~~~A~~~g~~v-----~~H~e~~~~~~~~~~~~~~~G~ 253 (331)
+. ++|.+.+-.... + ..+..++.+...+.++.|++.|+++ ..|.|+.++..+....+.+.+.
T Consensus 169 Lk-eAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gEt~edrv~~l~~lr~l~~ 244 (371)
T PRK07360 169 LK-DAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGHVETPEHRIDHLLILREIQQ 244 (371)
T ss_pred HH-HcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeCCCCHHHHHHHHHHHHHhch
Confidence 66 678876621000 0 0122356677789999999999965 4566776665555555555443
No 354
>PRK08185 hypothetical protein; Provisional
Probab=47.62 E-value=2.1e+02 Score=25.62 Aligned_cols=18 Identities=11% Similarity=0.038 Sum_probs=10.6
Q ss_pred HHHHHHHHHhcCCCEEEE
Q 020079 272 TTRAIRLAEFVNTPLYVV 289 (331)
Q Consensus 272 i~~~~~l~~~~g~~~~i~ 289 (331)
.++..+..+..|+.....
T Consensus 151 peea~~f~~~TgvD~LAv 168 (283)
T PRK08185 151 PEQAEDFVSRTGVDTLAV 168 (283)
T ss_pred HHHHHHHHHhhCCCEEEe
Confidence 344555555666666666
No 355
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=47.62 E-value=2.1e+02 Score=25.63 Aligned_cols=109 Identities=6% Similarity=-0.085 Sum_probs=57.3
Q ss_pred ChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHH-HHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccc
Q 020079 181 DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELL-IEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGH 259 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l-~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~ 259 (331)
+.+..+.+.+.+++.+...|- ..++........+.+ ..+.+.|++...||.+|..-....+. .....+.|+.+-=.=
T Consensus 27 n~e~~~avi~AAee~~sPvIi-q~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDHg~~~e~-i~~Ai~~GftSVM~D 104 (284)
T PRK09195 27 NLETMQVVVETAAELHSPVII-AGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDHHEKFDD-IAQKVRSGVRSVMID 104 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEE-EcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH-HHHHHHcCCCEEEeC
Confidence 345556666666555554442 222222222344444 44566888999999999733323333 344567787542111
Q ss_pred cccCChHHHHHHHHHHHHHHHhcCCC--EEEEeC
Q 020079 260 ALSRPPLLEGEATTRAIRLAEFVNTP--LYVVHV 291 (331)
Q Consensus 260 ~~~~~~~~e~~~i~~~~~l~~~~g~~--~~i~H~ 291 (331)
+...|...-....++..+++...|+. ..+.|+
T Consensus 105 gS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~v 138 (284)
T PRK09195 105 GSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRL 138 (284)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecc
Confidence 11223222233457788888888855 344555
No 356
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=47.50 E-value=1.7e+02 Score=25.77 Aligned_cols=43 Identities=5% Similarity=-0.046 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCC-CEEEEeC-CC--------HHHHHHHHHHHH-cCCCEEEe
Q 020079 271 ATTRAIRLAEFVNT-PLYVVHV-MS--------MDAMEEIAKARK-AGPNFLNT 313 (331)
Q Consensus 271 ~i~~~~~l~~~~g~-~~~i~H~-~~--------~~~~~~i~~~~~-~Gi~v~~~ 313 (331)
.+...++.....|. .+.++|| ++ .-.+..+..+|+ .+.+|..|
T Consensus 147 e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~d 200 (260)
T TIGR01361 147 EWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVD 200 (260)
T ss_pred HHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEc
Confidence 34445555556665 6888897 31 123455666666 48888754
No 357
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=47.36 E-value=1.4e+02 Score=25.47 Aligned_cols=104 Identities=12% Similarity=0.048 Sum_probs=59.0
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEE
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFK 201 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik 201 (331)
.+.++.....+.++++|++.+---. ......+.++..++.....+ +.....+.. .+ .+++++.. +.|.+.+
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~--~~~~a~~~i~~l~~~~~~~p-~~~vGaGTV-~~---~~~~~~a~-~aGA~Fi- 92 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTY--TNPFASEVIKELVELYKDDP-EVLIGAGTV-LD---AVTARLAI-LAGAQFI- 92 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--CCccHHHHHHHHHHHcCCCC-CeEEeeeeC-CC---HHHHHHHH-HcCCCEE-
Confidence 4567777778888999999885221 12245566666655432100 111111111 12 23455555 6788665
Q ss_pred EEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHH
Q 020079 202 FFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEG 244 (331)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~ 244 (331)
++| ..++ .+++.|+++|+++.--+.++.++...
T Consensus 93 --vsP----~~~~----~v~~~~~~~~i~~iPG~~T~~E~~~A 125 (213)
T PRK06552 93 --VSP----SFNR----ETAKICNLYQIPYLPGCMTVTEIVTA 125 (213)
T ss_pred --ECC----CCCH----HHHHHHHHcCCCEECCcCCHHHHHHH
Confidence 333 2344 45566889999988777777766544
No 358
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=47.33 E-value=1.6e+02 Score=24.36 Aligned_cols=93 Identities=14% Similarity=0.030 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhCCCeEEEEE-ecCC--CCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccc
Q 020079 185 SDEMEVMVKEKGINSFKFFM-AYKG--SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~-~~~~--~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~ 261 (331)
.++++.+. +.|++.+.+-+ +... ....+.+.++++.+ ..+.++.+|.-..+. ....+.+.+.|..+-..|..
T Consensus 14 ~~~~~~~~-~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~---~~~~~v~v~lm~~~~-~~~~~~~~~~gadgv~vh~~ 88 (210)
T TIGR01163 14 GEEVKAVE-EAGADWIHVDVMDGHFVPNLTFGPPVLEALRK---YTDLPIDVHLMVENP-DRYIEDFAEAGADIITVHPE 88 (210)
T ss_pred HHHHHHHH-HcCCCEEEEcCCCCCCCCCcccCHHHHHHHHh---cCCCcEEEEeeeCCH-HHHHHHHHHcCCCEEEEccC
Confidence 34455555 67888887631 1111 11234555555543 245677677522211 12334445666654333321
Q ss_pred cCChHHHHHHHHHHHHHHHhcCCCEEE
Q 020079 262 SRPPLLEGEATTRAIRLAEFVNTPLYV 288 (331)
Q Consensus 262 ~~~~~~e~~~i~~~~~l~~~~g~~~~i 288 (331)
. .....+.++.++..+...-+
T Consensus 89 ~------~~~~~~~~~~~~~~g~~~~~ 109 (210)
T TIGR01163 89 A------SEHIHRLLQLIKDLGAKAGI 109 (210)
T ss_pred C------chhHHHHHHHHHHcCCcEEE
Confidence 1 12234455666677766444
No 359
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=47.29 E-value=2.1e+02 Score=25.65 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=11.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE
Q 020079 213 NDELLIEGFKRCKSLGALAMVH 234 (331)
Q Consensus 213 ~~~~l~~~~~~A~~~g~~v~~H 234 (331)
+.+.++.+++.|++.+.|+.+.
T Consensus 26 n~e~~~avi~AAe~~~sPvIlq 47 (287)
T PF01116_consen 26 NLETARAVIEAAEELNSPVILQ 47 (287)
T ss_dssp SHHHHHHHHHHHHHTTS-EEEE
T ss_pred CHHHHHHHHHHHHHhCCCEEEE
Confidence 3455555555555555555444
No 360
>PRK06852 aldolase; Validated
Probab=46.49 E-value=2.3e+02 Score=25.70 Aligned_cols=49 Identities=12% Similarity=0.053 Sum_probs=30.5
Q ss_pred HHHHHHHHHhC------CCeEEEEEecCCCCc-CCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 186 DEMEVMVKEKG------INSFKFFMAYKGSFM-INDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 186 ~~~~~~~~~~g------~~~ik~~~~~~~~~~-~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
..+++.+ +.| ++.+.+.+.+.+... -.-+.+.++.+.|+++|+|+..+.
T Consensus 119 ~sVeeAv-rlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~ 174 (304)
T PRK06852 119 LDVEQVV-EFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWI 174 (304)
T ss_pred ecHHHHH-hcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 3456666 555 667776654432111 112346678899999999998753
No 361
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=46.39 E-value=2.1e+02 Score=25.32 Aligned_cols=177 Identities=17% Similarity=0.111 Sum_probs=90.0
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCC---------CCcHHHHHHHHHHHhccceeecccc----ccccCCChh-hHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPI---------NGSLTAGFEAYEKKAKNSCMDYGFH----MAITKWDEV-VSDE 187 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~ 187 (331)
.+.++....++.+.+.||..+- .+.+. .....+.++...+..++..+..... .+....+.+ ...+
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE-~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~d 96 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLE-VWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELF 96 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEE-ccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHH
Confidence 3455555556667778887764 22222 1234555565555544322221111 111112222 2344
Q ss_pred HHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc--CC-----chhhHHHHHHHHHcCCCCcc---
Q 020079 188 MEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA--EN-----GDAVFEGQKRMIELGITGPE--- 257 (331)
Q Consensus 188 ~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~--e~-----~~~~~~~~~~~~~~G~~~~~--- 257 (331)
++... +.|.+.+.++...+ +.+.+...++.|++.|+.+.... +. ++...+..+.+.+.|...-.
T Consensus 97 i~~~~-~~g~~~iri~~~~~-----~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~D 170 (275)
T cd07937 97 VEKAA-KNGIDIFRIFDALN-----DVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKD 170 (275)
T ss_pred HHHHH-HcCCCEEEEeecCC-----hHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 44444 67888887765322 46788899999999998876542 11 22333333456666654321
Q ss_pred cccccCChHHHHHHHHHHHHHHH-hcCCCEEE-EeCCCHHHHHHHHHHHHcCCCE
Q 020079 258 GHALSRPPLLEGEATTRAIRLAE-FVNTPLYV-VHVMSMDAMEEIAKARKAGPNF 310 (331)
Q Consensus 258 ~~~~~~~~~~e~~~i~~~~~l~~-~~g~~~~i-~H~~~~~~~~~i~~~~~~Gi~v 310 (331)
..+...| ..+.+.+...+ ..+.++.+ +|...+-+++-.-.+.+.|+..
T Consensus 171 T~G~~~P-----~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~aN~laA~~aGa~~ 220 (275)
T cd07937 171 MAGLLTP-----YAAYELVKALKKEVGLPIHLHTHDTSGLAVATYLAAAEAGVDI 220 (275)
T ss_pred CCCCCCH-----HHHHHHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHhCCCE
Confidence 1111222 23333444433 33455443 4665555555555566778764
No 362
>PRK09234 fbiC FO synthase; Reviewed
Probab=45.85 E-value=1.9e+02 Score=30.32 Aligned_cols=131 Identities=10% Similarity=0.010 Sum_probs=69.5
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCC-c---HHHHHHHHHHHhccceeecccccccc----CCChhhHHHHHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPING-S---LTAGFEAYEKKAKNSCMDYGFHMAIT----KWDEVVSDEMEVMVK 193 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 193 (331)
.+++++...++.+...|+|.+.-.++..+. . ..+.++..++..+...+..+....+. ...-...+.+.++.
T Consensus 557 Ls~eeI~~~a~ea~~~G~tev~i~gG~~p~~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~~~e~l~~Lk- 635 (843)
T PRK09234 557 LSLDEVADRAWEAWVAGATEVCMQGGIHPELPGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLSIREWLTALR- 635 (843)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcCHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCCHHHHHHHHH-
Confidence 456777777888899999998755433332 2 22333444433322222111000000 00001223445555
Q ss_pred HhCCCeEEE----EEec-----CCCCcCCHHHHHHHHHHHHHcCCcE-----EEEcCCchhhHHHHHHHHHcCC
Q 020079 194 EKGINSFKF----FMAY-----KGSFMINDELLIEGFKRCKSLGALA-----MVHAENGDAVFEGQKRMIELGI 253 (331)
Q Consensus 194 ~~g~~~ik~----~~~~-----~~~~~~~~~~l~~~~~~A~~~g~~v-----~~H~e~~~~~~~~~~~~~~~G~ 253 (331)
+.|.+.+-. +++. ..+..++.+...++++.|++.|+++ ..|.|+.++..+....+.+.+.
T Consensus 636 eAGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi~~~stmm~G~~Et~edrv~hl~~LreLq~ 709 (843)
T PRK09234 636 EAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGLRSSSTMMYGHVDTPRHWVAHLRVLRDIQD 709 (843)
T ss_pred HhCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcccceEEcCCCCHHHHHHHHHHHHhcCc
Confidence 677765521 1111 0112345666678999999999974 5678888777766666666654
No 363
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=45.83 E-value=2e+02 Score=26.81 Aligned_cols=107 Identities=13% Similarity=0.015 Sum_probs=55.7
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCC---cHHHHHHHHHH----HhccceeeccccccccCCChhhHHHHHHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPING---SLTAGFEAYEK----KAKNSCMDYGFHMAITKWDEVVSDEMEVMVKE 194 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (331)
.+++.+...+.....+|+--+-|-....+. ...+.+....+ ......-...+...++...++..+..+... +
T Consensus 140 lsp~~~a~~~y~~~~GG~D~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~~~em~~ra~~~~-~ 218 (366)
T cd08148 140 LNPKYTAEAAYAAALGGLDLIKDDETLTDQPFCPLRDRITEVAAALDRVQEETGEKKLYAVNVTAGTFEIIERAERAL-E 218 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCccccccccCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEEccCCHHHHHHHHHHHH-H
Confidence 567888777888899998777765443322 33333333222 221111111122233333344455555554 6
Q ss_pred hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
.|...+-+ ++ ....-..++.+.+..+ .+++++.|-
T Consensus 219 ~G~~~~mv--~~---~~~G~~~l~~l~~~~~-~~l~IhaHr 253 (366)
T cd08148 219 LGANMLMV--DV---LTAGFSALQALAEDFE-IDLPIHVHR 253 (366)
T ss_pred hCCCEEEE--ec---cccchHHHHHHHHhCc-CCcEEEecc
Confidence 77765533 21 1123345666555433 699999994
No 364
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=45.82 E-value=1.2e+02 Score=28.05 Aligned_cols=22 Identities=9% Similarity=0.081 Sum_probs=11.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE
Q 020079 213 NDELLIEGFKRCKSLGALAMVH 234 (331)
Q Consensus 213 ~~~~l~~~~~~A~~~g~~v~~H 234 (331)
+.+.++++++.|++.+.|+.+-
T Consensus 25 n~e~~~aii~AAEe~~sPvIlq 46 (347)
T TIGR01521 25 NMEQMRAIMEAADKTDSPVILQ 46 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEE
Confidence 4455555555555555555444
No 365
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=45.79 E-value=1.8e+02 Score=27.41 Aligned_cols=107 Identities=15% Similarity=0.139 Sum_probs=56.0
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCC---cHHHHHHHHHHH----hccceeeccccccccCCChhhHHHHHHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPING---SLTAGFEAYEKK----AKNSCMDYGFHMAITKWDEVVSDEMEVMVKE 194 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (331)
.+++.+...+.....+|+=-+-|-....+. ...+.+....+. ..+..-...+...++...++..+..+... +
T Consensus 137 lsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a~~eTG~~~~ya~NiT~~~~em~~ra~~~~-~ 215 (391)
T cd08209 137 LDLDDLAEQLREQALGGVDLIKDDEILFDNPLAPALERIRACRPVLQEVYEQTGRRTLYAVNLTGPVFTLKEKARRLV-E 215 (391)
T ss_pred CCHHHHHHHHHHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCCHHHHHHHHHHHH-H
Confidence 567888777888899998877765443322 344443333322 21111111122223333444455555454 6
Q ss_pred hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
.|.+.+-+ ++ ....-..++.+.+. .+.+++++.|.
T Consensus 216 ~G~~~~mv--~~---~~~G~~~l~~l~~~-~~~~lpIhaHr 250 (391)
T cd08209 216 AGANALLF--NV---FAYGLDVLEALASD-PEINVPIFAHP 250 (391)
T ss_pred hCCCEEEE--ec---cccchHHHHHHHhc-CcCCcEEEecC
Confidence 77776533 22 11233445555543 35689999994
No 366
>PRK05370 argininosuccinate synthase; Validated
Probab=45.79 E-value=2.8e+02 Score=26.57 Aligned_cols=94 Identities=15% Similarity=0.033 Sum_probs=47.9
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCC-cEEEEcCCchhhHHHHHHHHHcCCCC----cccccccCChHHH
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGA-LAMVHAENGDAVFEGQKRMIELGITG----PEGHALSRPPLLE 268 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~-~v~~H~e~~~~~~~~~~~~~~~G~~~----~~~~~~~~~~~~e 268 (331)
+.|...+.+..+-.+ ...+.++.+-+.|.+.|. ++.+---..+.++.+. .+.+.+..= ...++. ......
T Consensus 33 e~~~eVia~~aDvGQ---~~~ed~~~i~~kA~~~GA~~~~viDlr~eF~e~~i-~aI~anA~Y~~~~e~~Y~l-~t~LaR 107 (447)
T PRK05370 33 QKGAVPYAYTANLGQ---PDEDDYDAIPRRAMEYGAENARLIDCRAQLVAEGI-AAIQCGAFHISTGGVTYFN-TTPLGR 107 (447)
T ss_pred hcCCeEEEEEEECCC---CCccchHHHHHHHHHhCCCEEEEeccHHHHHHHHH-HHHHcCCccccccCccccC-CCcchH
Confidence 346665554444321 124678888888888888 3443322223344444 334443310 101111 111122
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCC
Q 020079 269 GEATTRAIRLAEFVNTPLYVVHVMS 293 (331)
Q Consensus 269 ~~~i~~~~~l~~~~g~~~~i~H~~~ 293 (331)
.......++.+++.|+.+ ++|.++
T Consensus 108 plia~~lv~~A~~~ga~a-IAHG~T 131 (447)
T PRK05370 108 AVTGTMLVAAMKEDGVNI-WGDGST 131 (447)
T ss_pred HHHHHHHHHHHHHhCCcE-EEEcCC
Confidence 233455678888888875 888775
No 367
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=45.76 E-value=1.3e+02 Score=25.07 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=15.9
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHH
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~ 226 (331)
+.|++.+.+......+...+.+..+++.+.+..
T Consensus 17 ~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~ 49 (203)
T cd00405 17 EAGADAIGFIFAPKSPRYVSPEQAREIVAALPP 49 (203)
T ss_pred HcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCC
Confidence 455555554443333344445555555554443
No 368
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=45.51 E-value=25 Score=32.89 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=28.6
Q ss_pred CCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 283 NTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 283 g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
+.++.+.||...+. +.+++++++|+.|+ .||.++..+
T Consensus 230 ~~~~~~~H~~~l~~-~~~~~l~~~g~~v~--~~P~sn~~l 266 (381)
T cd01312 230 GTRVSFVHCVYANL-EEAEILASRGASIA--LCPRSNRLL 266 (381)
T ss_pred CCCcEEEECCcCCH-HHHHHHHHcCCeEE--ECcchhhhh
Confidence 45889999987655 67899999998776 788776544
No 369
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=45.42 E-value=1.5e+02 Score=25.85 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHcCCcEEEEc
Q 020079 216 LLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 216 ~l~~~~~~A~~~g~~v~~H~ 235 (331)
.++++.+.|+++|+.+.+|.
T Consensus 130 ~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 130 NLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHcCCEEEEec
Confidence 35666677777777766664
No 370
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=45.25 E-value=95 Score=28.59 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhCCCeEEEEEecCCCCc-CCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 185 SDEMEVMVKEKGINSFKFFMAYKGSFM-INDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~~~~~~~-~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
...+++.+ +.|++.+.+.+.+.+... -.-+.+.++++.|+++|+|+.+++
T Consensus 149 ~~sVedAl-rLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~ 199 (348)
T PRK09250 149 TASVEDAL-RLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWS 199 (348)
T ss_pred eecHHHHH-HCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 34466677 789998877655432211 123456788899999999998864
No 371
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=44.26 E-value=2.7e+02 Score=26.02 Aligned_cols=109 Identities=13% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCceEEecCcCCCC---------------CcHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHH
Q 020079 128 FSGQAAALAGGTTMHIDFVIPIN---------------GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMV 192 (331)
Q Consensus 128 ~~~~~~~l~~GvTtv~d~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (331)
....+.++..|+..+.-.....+ ....+.++..++.+ ..+.+..........+...+.++.+.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G--~~v~~~~ed~~r~~~~~l~~~~~~~~ 155 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHG--LYVSFSAEDASRTDLDFLIEFAKAAE 155 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC--CeEEEEeccCCCCCHHHHHHHHHHHH
Q ss_pred HHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc-CCcEEEEcCCchhhH
Q 020079 193 KEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHAENGDAVF 242 (331)
Q Consensus 193 ~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~-g~~v~~H~e~~~~~~ 242 (331)
+.|++.|.+.-... ..+++.+.+++...++. ++++.+|+.++....
T Consensus 156 -~~Ga~~I~l~DT~G---~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA 202 (378)
T PRK11858 156 -EAGADRVRFCDTVG---ILDPFTMYELVKELVEAVDIPIEVHCHNDFGMA 202 (378)
T ss_pred -hCCCCEEEEeccCC---CCCHHHHHHHHHHHHHhcCCeEEEEecCCcCHH
No 372
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=43.92 E-value=2.4e+02 Score=25.25 Aligned_cols=109 Identities=5% Similarity=-0.059 Sum_probs=57.9
Q ss_pred ChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHH-HHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccc
Q 020079 181 DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIE-GFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGH 259 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~-~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~ 259 (331)
+.+..+.+.+.+++.+...|- ..++........+.+.. +...|++...||.+|..-....+. ..+..+.|+.+-=.=
T Consensus 27 n~e~~~avi~AAee~~sPvIi-q~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHLDH~~~~e~-i~~ai~~GftSVMiD 104 (284)
T PRK12737 27 NLETLQVVVETAAELRSPVIL-AGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHLDHHEDLDD-IKKKVRAGIRSVMID 104 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEE-EcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH-HHHHHHcCCCeEEec
Confidence 445566666666555555442 22222222234455555 566788889999999732222222 244566676542111
Q ss_pred cccCChHHHHHHHHHHHHHHHhcCCCE--EEEeC
Q 020079 260 ALSRPPLLEGEATTRAIRLAEFVNTPL--YVVHV 291 (331)
Q Consensus 260 ~~~~~~~~e~~~i~~~~~l~~~~g~~~--~i~H~ 291 (331)
+...|...-....++..+++...|+.+ .+.|+
T Consensus 105 gS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~i 138 (284)
T PRK12737 105 GSHLSFEENIAIVKEVVEFCHRYDASVEAELGRL 138 (284)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 112332222344577888999888653 34454
No 373
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=43.53 E-value=1.4e+02 Score=27.53 Aligned_cols=22 Identities=9% Similarity=0.060 Sum_probs=10.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE
Q 020079 213 NDELLIEGFKRCKSLGALAMVH 234 (331)
Q Consensus 213 ~~~~l~~~~~~A~~~g~~v~~H 234 (331)
+.+.++.+++.|++.+.|+.+-
T Consensus 27 n~e~~~avi~AAee~~sPvIiq 48 (347)
T PRK09196 27 NLEQVQAIMEAADETDSPVILQ 48 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEE
Confidence 3444444444444444444443
No 374
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=43.49 E-value=1.9e+02 Score=25.60 Aligned_cols=54 Identities=6% Similarity=-0.047 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc--CCcEEEEcCCchhh
Q 020079 185 SDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL--GALAMVHAENGDAV 241 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~--g~~v~~H~e~~~~~ 241 (331)
..++.+.+.+.|++.|.+- +. .-..+++.+..+++..++. ++++.+|+.+....
T Consensus 151 ~~~~~~~~~~~Ga~~i~l~-DT--~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~Gl 206 (274)
T cd07938 151 VAEVAERLLDLGCDEISLG-DT--IGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQ 206 (274)
T ss_pred HHHHHHHHHHcCCCEEEEC-CC--CCccCHHHHHHHHHHHHHHCCCCeEEEEECCCCCh
Confidence 3333333336788876432 21 2235678888888877665 58899999776543
No 375
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=43.49 E-value=3.1e+02 Score=26.50 Aligned_cols=187 Identities=16% Similarity=0.155 Sum_probs=98.7
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcC--------CCCCcHHHHHHHHHHHhccceeecccc----ccccCCChhhHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVI--------PINGSLTAGFEAYEKKAKNSCMDYGFH----MAITKWDEVVSDEME 189 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 189 (331)
.+.++....+..+.+.|+..+--.+. ......++.++..++..++..+..... .+....+++..+...
T Consensus 22 ~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv 101 (467)
T PRK14041 22 MRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFV 101 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHH
Confidence 45566666666677788888754211 111244566666655544332221111 112223344344433
Q ss_pred HHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEE---cCCc----hhhHHHHHHHHHcCCCCcc---cc
Q 020079 190 VMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH---AENG----DAVFEGQKRMIELGITGPE---GH 259 (331)
Q Consensus 190 ~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H---~e~~----~~~~~~~~~~~~~G~~~~~---~~ 259 (331)
+.+.+.|++.+.++...+ +.+.+...++.|++.|..+..= .-++ +......+.+.+.|..... ..
T Consensus 102 ~~A~~~Gvd~irif~~ln-----d~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~ 176 (467)
T PRK14041 102 KKVAEYGLDIIRIFDALN-----DIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICIKDMA 176 (467)
T ss_pred HHHHHCCcCEEEEEEeCC-----HHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 333378999998876532 3567888999999999876522 1222 2222333456677764311 11
Q ss_pred cccCChHHHHHHHHHHHHHH-HhcCCCEEE-EeCCCHHHHHHHHHHHHcCCCEE-EecCCcc
Q 020079 260 ALSRPPLLEGEATTRAIRLA-EFVNTPLYV-VHVMSMDAMEEIAKARKAGPNFL-NTTIPLC 318 (331)
Q Consensus 260 ~~~~~~~~e~~~i~~~~~l~-~~~g~~~~i-~H~~~~~~~~~i~~~~~~Gi~v~-~~~~p~~ 318 (331)
+...| ..+.+.+..+ +..+.++++ +|++.+-+++-.-.+-++|+.+. +.++|..
T Consensus 177 G~l~P-----~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~~~g 233 (467)
T PRK14041 177 GLLTP-----KRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAGADMFDTAISPFS 233 (467)
T ss_pred CCcCH-----HHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhCCCEEEeeccccC
Confidence 11223 2333333333 334666554 47777777777777788998753 3344433
No 376
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=43.31 E-value=2.5e+02 Score=26.67 Aligned_cols=104 Identities=13% Similarity=0.050 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHcCCcE-EEEcCC----------chhhHHHHHHHHHcCCCC-------cccccccCC--hH--HHHHHHH
Q 020079 216 LLIEGFKRCKSLGALA-MVHAEN----------GDAVFEGQKRMIELGITG-------PEGHALSRP--PL--LEGEATT 273 (331)
Q Consensus 216 ~l~~~~~~A~~~g~~v-~~H~e~----------~~~~~~~~~~~~~~G~~~-------~~~~~~~~~--~~--~e~~~i~ 273 (331)
-+..+++.|.+.|... .+-..+ ...+....+.+.+.|+.. +.......| .. .....+.
T Consensus 142 G~~~a~~~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekSv~~~~ 221 (413)
T PTZ00372 142 GVDNSPINAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKSYDAFL 221 (413)
T ss_pred cHHHHHHHHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHHHHHHH
Confidence 4566777777777642 222222 133444455667776531 111111122 22 2235567
Q ss_pred HHHHHHHhcCCCEEEEeCCCH-------HHHHHH----HHH--HHcCCCEEEecCCccc
Q 020079 274 RAIRLAEFVNTPLYVVHVMSM-------DAMEEI----AKA--RKAGPNFLNTTIPLCD 319 (331)
Q Consensus 274 ~~~~l~~~~g~~~~i~H~~~~-------~~~~~i----~~~--~~~Gi~v~~~~~p~~~ 319 (331)
+.++++...|++..+.|-... .+++.+ .++ ...|+.+..+..+-..
T Consensus 222 ~eL~rA~~LGa~~VV~HPGs~~~~~~~ee~i~~i~e~L~~~la~~~gV~IlLENmag~g 280 (413)
T PTZ00372 222 DDLQRCEQLGIKLYNFHPGSTVGQCSKEEGIKNIADCINKAHEETKSVIIVLENTAGQK 280 (413)
T ss_pred HHHHHHHHcCCCEEEECCCcCCCCCCHHHHHHHHHHHHHHHHhCcCCCEEEEecCCCCC
Confidence 888999999999999998882 222222 222 2346777888776544
No 377
>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]
Probab=43.29 E-value=2.7e+02 Score=25.71 Aligned_cols=29 Identities=17% Similarity=0.063 Sum_probs=20.6
Q ss_pred cccccccccCCCCCCCChhhHHHHHHHHHhCCceEE
Q 020079 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMH 142 (331)
Q Consensus 107 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTtv 142 (331)
-.+.|.|+... ..++.+ .+.+.++|+...
T Consensus 13 kaelH~HL~g~----l~p~~v---~~la~r~gi~~~ 41 (345)
T COG1816 13 KAELHRHLEGS----LRPELV---LELARRYGIALP 41 (345)
T ss_pred hhHhhhcccCC----cCHHHH---HHHHHHhCccCC
Confidence 35789999855 555655 567788998754
No 378
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=43.15 E-value=33 Score=22.79 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=21.6
Q ss_pred cccccccCCC-CCCCChhhHHHHHHHHHhCCceEEe
Q 020079 109 DPHTHLAMEF-MGSETIDDFFSGQAAALAGGTTMHI 143 (331)
Q Consensus 109 D~H~H~~~~~-~~~~~~~~~~~~~~~~l~~GvTtv~ 143 (331)
|.|+|...+. .+...++++ .+.+.+.|...+.
T Consensus 1 dlH~Ht~~S~~~~~~~~~~~---~~~a~~~g~~~v~ 33 (67)
T smart00481 1 DLHVHSDYSLLDGALSPEEL---VKRAKELGLKAIA 33 (67)
T ss_pred CCccccCCccccccCCHHHH---HHHHHHcCCCEEE
Confidence 6899987653 344555555 6777888887765
No 379
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=43.00 E-value=2.1e+02 Score=24.40 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=38.6
Q ss_pred HHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCC
Q 020079 188 MEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGI 253 (331)
Q Consensus 188 ~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~ 253 (331)
.+... +.|++.+.+... .+.+.++.+.+.|+++|..+.+-.-+........+.+.+.|.
T Consensus 73 ~~ma~-~aGAd~~tV~g~------A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gv 131 (217)
T COG0269 73 ARMAF-EAGADWVTVLGA------ADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGV 131 (217)
T ss_pred HHHHH-HcCCCEEEEEec------CCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCC
Confidence 33344 789998866432 368999999999999999988876433333333333433443
No 380
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=42.98 E-value=3.6e+02 Score=27.02 Aligned_cols=180 Identities=18% Similarity=0.145 Sum_probs=96.4
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCC--------CCCcHHHHHHHHHHHhccceeecccc----ccccCCChhhHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIP--------INGSLTAGFEAYEKKAKNSCMDYGFH----MAITKWDEVVSDEME 189 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 189 (331)
...++....+..+.+.|+..+--.++. ...+.++.++.+++..++..+..... .+....+++..+...
T Consensus 23 ~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v 102 (592)
T PRK09282 23 MRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFV 102 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHH
Confidence 455666566666777888886533111 11245566666665544433221111 122223444443333
Q ss_pred HHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc---CCc----hhhHHHHHHHHHcCCCCcc---cc
Q 020079 190 VMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA---ENG----DAVFEGQKRMIELGITGPE---GH 259 (331)
Q Consensus 190 ~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~---e~~----~~~~~~~~~~~~~G~~~~~---~~ 259 (331)
+.+.+.|++.+.++...+ +.+.+...++.+++.|..+.+-. .++ +......+.+.+.|..... ..
T Consensus 103 ~~A~~~Gvd~irif~~ln-----d~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~ 177 (592)
T PRK09282 103 EKAAENGIDIFRIFDALN-----DVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIKDMA 177 (592)
T ss_pred HHHHHCCCCEEEEEEecC-----hHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCcC
Confidence 333378999998876533 34678888999999998775331 121 2222333456677764311 11
Q ss_pred cccCChHHHHHHHHHHHHHH-HhcCCCEEE-EeCCCHHHHHHHHHHHHcCCCEE
Q 020079 260 ALSRPPLLEGEATTRAIRLA-EFVNTPLYV-VHVMSMDAMEEIAKARKAGPNFL 311 (331)
Q Consensus 260 ~~~~~~~~e~~~i~~~~~l~-~~~g~~~~i-~H~~~~~~~~~i~~~~~~Gi~v~ 311 (331)
+...| ..+.+.+..+ +..+.++++ +|.+.+-+++-.-.+-++|+.+.
T Consensus 178 G~~~P-----~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAv~aGad~v 226 (592)
T PRK09282 178 GLLTP-----YAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAVEAGVDII 226 (592)
T ss_pred CCcCH-----HHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHHHHHHhCCCEE
Confidence 11223 2233333333 334555544 47777777777777888998753
No 381
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=42.95 E-value=23 Score=33.81 Aligned_cols=37 Identities=11% Similarity=0.156 Sum_probs=28.8
Q ss_pred CCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 283 NTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 283 g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
+.++.++||...+. +.++.+++.|+.|+ .||.+|..+
T Consensus 253 ~~~~~~~H~~~~~~-~d~~~la~~g~~v~--~cP~sn~~l 289 (441)
T TIGR03314 253 GSKTLAAHCIYLSD-REIELLNETDTFVV--HNPESNMGN 289 (441)
T ss_pred CCCeEEEEEecCCH-HHHHHHHHcCCcEE--ECHHHHhhh
Confidence 45788999976655 67889999998777 789877554
No 382
>PRK05927 hypothetical protein; Provisional
Probab=42.63 E-value=2.1e+02 Score=26.51 Aligned_cols=70 Identities=11% Similarity=0.017 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHH-----------HHHHHHH
Q 020079 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFE-----------GQKRMIE 250 (331)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~-----------~~~~~~~ 250 (331)
++..+.+++.. +.|+..+-+ .++.. +..+.+.+..+++..++.--.++.|+-+..++.. ....+.+
T Consensus 79 eei~~~a~~~~-~~G~~~i~i-~gG~~-p~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk~ 155 (350)
T PRK05927 79 DEFRSLMQRYV-SAGVKTVLL-QGGVH-PQLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALERLWD 155 (350)
T ss_pred HHHHHHHHHHH-HCCCCEEEE-eCCCC-CCCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 34445554444 567776654 33333 3457778888888877642236777666555442 2345777
Q ss_pred cCCC
Q 020079 251 LGIT 254 (331)
Q Consensus 251 ~G~~ 254 (331)
.|+.
T Consensus 156 aGl~ 159 (350)
T PRK05927 156 AGQR 159 (350)
T ss_pred cCcc
Confidence 7773
No 383
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=42.62 E-value=2.1e+02 Score=27.49 Aligned_cols=105 Identities=6% Similarity=0.038 Sum_probs=56.4
Q ss_pred HHHHHHHhCCceEEe-cCcCCCCCcHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecC
Q 020079 129 SGQAAALAGGTTMHI-DFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK 207 (331)
Q Consensus 129 ~~~~~~l~~GvTtv~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~ 207 (331)
..+..++.+|+..+. |..........+.++..++..+...+- .+.. ...+..+.+. +.|++.+++.+++.
T Consensus 227 ~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi----~G~v----~t~~~a~~l~-~aGad~i~vg~g~G 297 (450)
T TIGR01302 227 ERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDII----AGNV----ATAEQAKALI-DAGADGLRVGIGPG 297 (450)
T ss_pred HHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEE----EEeC----CCHHHHHHHH-HhCCCEEEECCCCC
Confidence 335567888988765 553322223444555554433221111 1111 1234556666 78999998765443
Q ss_pred CCCc---------CCHHHHHHHHHHHHHcCCcEEE--EcCCchhhH
Q 020079 208 GSFM---------INDELLIEGFKRCKSLGALAMV--HAENGDAVF 242 (331)
Q Consensus 208 ~~~~---------~~~~~l~~~~~~A~~~g~~v~~--H~e~~~~~~ 242 (331)
+... .....+.++.+.+++.++|+.. ...+...+.
T Consensus 298 ~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~ 343 (450)
T TIGR01302 298 SICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIV 343 (450)
T ss_pred cCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHH
Confidence 1110 1234556677788889999877 455555443
No 384
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=42.43 E-value=2e+02 Score=27.01 Aligned_cols=94 Identities=17% Similarity=0.061 Sum_probs=41.6
Q ss_pred HhC-CCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCC-cEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHH
Q 020079 194 EKG-INSFKFFMAYKGSFMINDELLIEGFKRCKSLGA-LAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (331)
Q Consensus 194 ~~g-~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~-~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~ 271 (331)
+.+ .+.+.+..+-.+ +++.+..+-+.|.+.|. ++.+---..+..++..-...+.+..=...++.. ....-...
T Consensus 19 e~~~~~Via~~aDlGq----~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~~~i~~aI~anA~Yeg~YpL~-tsl~RplI 93 (388)
T PF00764_consen 19 EEGGYEVIAVTADLGQ----PDEDLEAIEEKALKLGASKHIVVDARDEFAEDYIFPAIKANALYEGRYPLS-TSLARPLI 93 (388)
T ss_dssp HTTTEEEEEEEEESSS----T-S-HHHHHHHHHHHT-SEEEEEE-HHHHHHHTHHHHHHTT--BTTTB--C-CCCHHHHH
T ss_pred hhcCceEEEEEEECCC----cHHHHHHHHHHHHhcCCceeeecchHHHHHHHHHHHHHHHHHHhCCCcccc-ccchHHHH
Confidence 444 555555444332 34688888888888887 543331222223233222333332211112211 11222244
Q ss_pred HHHHHHHHHhcCCCEEEEeCCC
Q 020079 272 TTRAIRLAEFVNTPLYVVHVMS 293 (331)
Q Consensus 272 i~~~~~l~~~~g~~~~i~H~~~ 293 (331)
.+..++.+.+.|+.+ ++|.++
T Consensus 94 a~~~v~~A~~~ga~~-vaHG~T 114 (388)
T PF00764_consen 94 AKKLVEVAREEGADA-VAHGCT 114 (388)
T ss_dssp HHHHHHHHHHHT-SE-EE----
T ss_pred HHHHHHHHHHcCCeE-EeccCC
Confidence 566788899999886 888654
No 385
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=42.36 E-value=2.1e+02 Score=24.26 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=56.4
Q ss_pred CCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEE-EEcCCchhhHHHHHHHHHcCCCCccc--ccccCC-hHHHHHH
Q 020079 196 GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM-VHAENGDAVFEGQKRMIELGITGPEG--HALSRP-PLLEGEA 271 (331)
Q Consensus 196 g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~-~H~e~~~~~~~~~~~~~~~G~~~~~~--~~~~~~-~~~e~~~ 271 (331)
++.++--.+ .+..+.+.+.++.+++..+++|+.+. .+.....-.. +...+.|+..... ...... ...=...
T Consensus 89 ~a~GvnNhm--GS~~T~~~~~m~~vl~~l~~~gl~FvDS~T~~~s~a~---~~A~~~gvp~~~rdvfLD~~~~~~~I~~q 163 (213)
T PF04748_consen 89 GAVGVNNHM--GSRFTSDREAMRWVLEVLKERGLFFVDSRTTPRSVAP---QVAKELGVPAARRDVFLDNDQDEAAIRRQ 163 (213)
T ss_dssp T-SEEEEEE---CCHHC-HHHHHHHHHHHHHTT-EEEE-S--TT-SHH---HHHHHCT--EEE-SEETTST-SHHHHHHH
T ss_pred CcEEEecCC--CccccCCHHHHHHHHHHHHHcCCEEEeCCCCcccHHH---HHHHHcCCCEEeeceecCCCCCHHHHHHH
Confidence 444543333 23455678899999999999999876 3332222111 2234555543221 111111 1111244
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCH--HHH-HHHHHHHHcCCCEE
Q 020079 272 TTRAIRLAEFVNTPLYVVHVMSM--DAM-EEIAKARKAGPNFL 311 (331)
Q Consensus 272 i~~~~~l~~~~g~~~~i~H~~~~--~~~-~~i~~~~~~Gi~v~ 311 (331)
+++.+.++++.|.-+.+.|.... +.+ +.+..+++.|+.+.
T Consensus 164 l~~~~~~A~~~G~aI~Igh~~p~Tl~~L~~~~~~l~~~gi~lV 206 (213)
T PF04748_consen 164 LDQAARIARKQGSAIAIGHPRPETLEALEEWLPELEAQGIELV 206 (213)
T ss_dssp HHHHHHHHHCCSEEEEEEE-SCCHHHHHHHHHHHHHHCTEEE-
T ss_pred HHHHHHhhhhcCcEEEEEcCCHHHHHHHHHHHhHHhhCCEEEE
Confidence 67788888888988999998542 222 23455677886554
No 386
>PRK09228 guanine deaminase; Provisional
Probab=42.35 E-value=2.1e+02 Score=27.19 Aligned_cols=37 Identities=11% Similarity=0.195 Sum_probs=27.7
Q ss_pred CCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 283 NTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 283 g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
+.++.+.|+...+. +.++++++.|+.|. .||.++..+
T Consensus 263 ~~~~~~~H~~~l~~-~~~~~la~~g~~v~--~~P~sn~~l 299 (433)
T PRK09228 263 GPRAVFAHCIHLED-RERRRLAETGAAIA--FCPTSNLFL 299 (433)
T ss_pred CCCeEEEeccCCCH-HHHHHHHHcCCeEE--ECCccHHhh
Confidence 45788999976555 67889999997666 788876543
No 387
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=42.08 E-value=32 Score=32.53 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=28.8
Q ss_pred cCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 282 VNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 282 ~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
.+.++.+.||...+. +.++++++.|+.|+ .||.++..+
T Consensus 254 l~~~~~~~H~~~l~~-~~~~~la~~g~~v~--~~P~sn~~l 291 (418)
T cd01313 254 LDARWCLVHATHLTD-NETLLLGRSGAVVG--LCPTTEANL 291 (418)
T ss_pred CCCCEEEEeCCCCCH-HHHHHHHHcCCEEE--ECCCchhhc
Confidence 456788999986555 67999999997776 788876543
No 388
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=41.82 E-value=29 Score=32.98 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=27.3
Q ss_pred CCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccc
Q 020079 283 NTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSC 321 (331)
Q Consensus 283 g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~ 321 (331)
+.++.+.||...+. +.++++++.|+.|+ .||.++..
T Consensus 260 ~~~~~l~H~~~l~~-~~~~~l~~~g~~v~--~~P~sn~~ 295 (429)
T cd01303 260 TEKTVLAHCVHLSE-EEFNLLKERGASVA--HCPTSNLF 295 (429)
T ss_pred CCCcEEEeCCCCCH-HHHHHHHHcCCEEE--ECccchhh
Confidence 45788999986555 67889999998776 67876643
No 389
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=41.70 E-value=90 Score=29.23 Aligned_cols=78 Identities=18% Similarity=0.208 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChH
Q 020079 187 EMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPL 266 (331)
Q Consensus 187 ~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 266 (331)
.+.++++..|.....+-..|. ...+++.+++.++.-.+......+|+|+...+.
T Consensus 94 R~~~ia~~~g~~v~~~~~~wg--~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvl------------------------ 147 (383)
T COG0075 94 RFAEIAERYGAEVVVLEVEWG--EAVDPEEVEEALDKDPDIKAVAVVHNETSTGVL------------------------ 147 (383)
T ss_pred HHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhcCCCccEEEEEeccCccccc------------------------
Confidence 445555556766554433332 346889999998866666778899998765431
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 020079 267 LEGEATTRAIRLAEFVNTPLYVVHVMS 293 (331)
Q Consensus 267 ~e~~~i~~~~~l~~~~g~~~~i~H~~~ 293 (331)
..+++..++++++|..+.+--+++
T Consensus 148 ---npl~~I~~~~k~~g~l~iVDaVsS 171 (383)
T COG0075 148 ---NPLKEIAKAAKEHGALLIVDAVSS 171 (383)
T ss_pred ---CcHHHHHHHHHHcCCEEEEEeccc
Confidence 234555677777887766666554
No 390
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=41.67 E-value=2.5e+02 Score=24.77 Aligned_cols=92 Identities=21% Similarity=0.105 Sum_probs=53.1
Q ss_pred CChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcC-CchhhHHHHHHHHHcCCCCccc
Q 020079 180 WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE-NGDAVFEGQKRMIELGITGPEG 258 (331)
Q Consensus 180 ~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e-~~~~~~~~~~~~~~~G~~~~~~ 258 (331)
..++..+...+++++.|++.+|+=. -+++...++...+.|+||+.|.. .++.+.+. -|. +
T Consensus 91 s~~~a~~nA~r~~ke~gA~aVKlEG---------G~~~~~~i~~L~~~gIPV~gHiGLtPQ~v~~~------GGy---k- 151 (268)
T COG0413 91 SPEQALKNAARLMKEAGADAVKLEG---------GEEMAETIKRLTERGIPVMGHIGLTPQSVNWL------GGY---K- 151 (268)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcC---------CHHHHHHHHHHHHcCCceEEEecCChhhhhcc------CCe---e-
Confidence 3455666677777568999998621 15666777777889999999974 34332211 011 0
Q ss_pred ccccCChHHHHHHHHHHHHHHHhcCCC-EEEEeCC
Q 020079 259 HALSRPPLLEGEATTRAIRLAEFVNTP-LYVVHVM 292 (331)
Q Consensus 259 ~~~~~~~~~e~~~i~~~~~l~~~~g~~-~~i~H~~ 292 (331)
..++.. .+...+.++...+++.|+- +.+.+.+
T Consensus 152 -vqGr~~-~~a~~l~~dA~ale~AGaf~ivlE~Vp 184 (268)
T COG0413 152 -VQGRTE-ESAEKLLEDAKALEEAGAFALVLECVP 184 (268)
T ss_pred -eecCCH-HHHHHHHHHHHHHHhcCceEEEEeccH
Confidence 111222 2234455666777777864 4444443
No 391
>PLN02591 tryptophan synthase
Probab=41.59 E-value=2.4e+02 Score=24.66 Aligned_cols=17 Identities=24% Similarity=-0.025 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhcCCCE
Q 020079 270 EATTRAIRLAEFVNTPL 286 (331)
Q Consensus 270 ~~i~~~~~l~~~~g~~~ 286 (331)
+...+....++++|...
T Consensus 118 ee~~~~~~~~~~~gl~~ 134 (250)
T PLN02591 118 EETEALRAEAAKNGIEL 134 (250)
T ss_pred HHHHHHHHHHHHcCCeE
Confidence 33455566666666553
No 392
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=41.51 E-value=2.6e+02 Score=24.92 Aligned_cols=124 Identities=16% Similarity=0.004 Sum_probs=67.0
Q ss_pred HHHHHHHHHhCCCeEEEEEecCC-----CCcCC----HHHHHHHHHHHHHcCCcEEEEcCC--------chhhHHHHHHH
Q 020079 186 DEMEVMVKEKGINSFKFFMAYKG-----SFMIN----DELLIEGFKRCKSLGALAMVHAEN--------GDAVFEGQKRM 248 (331)
Q Consensus 186 ~~~~~~~~~~g~~~ik~~~~~~~-----~~~~~----~~~l~~~~~~A~~~g~~v~~H~e~--------~~~~~~~~~~~ 248 (331)
+.++... +.|.+.+.++..-.. ....+ .+.+..+++.|++.|+.+.+..++ ++.+.+..+.+
T Consensus 78 ~~~~~A~-~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~ 156 (280)
T cd07945 78 KSVDWIK-SAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFL 156 (280)
T ss_pred HHHHHHH-HCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 3455555 678888887763210 00112 234567889999999999888763 22333334556
Q ss_pred HHcCCCCcc---cccccCChHHHHHHHHHHHHHHHh-c-CCCEE-EEeCCCHHHHHHHHHHHHcCCCEEEecCC
Q 020079 249 IELGITGPE---GHALSRPPLLEGEATTRAIRLAEF-V-NTPLY-VVHVMSMDAMEEIAKARKAGPNFLNTTIP 316 (331)
Q Consensus 249 ~~~G~~~~~---~~~~~~~~~~e~~~i~~~~~l~~~-~-g~~~~-i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p 316 (331)
.+.|...-. ..+...| ..+.+.+...++ . +.++. .+|.+.+-+++-.-.+-+.|+.. ++++.
T Consensus 157 ~~~G~~~i~l~DT~G~~~P-----~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~-vd~s~ 224 (280)
T cd07945 157 SDLPIKRIMLPDTLGILSP-----FETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKG-LHTTV 224 (280)
T ss_pred HHcCCCEEEecCCCCCCCH-----HHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCE-EEEec
Confidence 666764321 1122233 234444444433 2 24443 34665566666666777888864 34443
No 393
>PRK06801 hypothetical protein; Provisional
Probab=41.39 E-value=2.6e+02 Score=25.01 Aligned_cols=104 Identities=11% Similarity=-0.025 Sum_probs=56.2
Q ss_pred ChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHH-HHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccc
Q 020079 181 DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDEL-LIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGH 259 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~-l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~ 259 (331)
+.+..+.+.+.+++.+...|- .+.+......+.+. ..-+.+.|++...||.+|..-....+ ......+.|+..--.-
T Consensus 27 n~e~~~avi~AAe~~~~PvIl-~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e-~i~~Ai~~GftSVm~D 104 (286)
T PRK06801 27 DSHFLRALFAAAKQERSPFII-NIAEVHFKYISLESLVEAVKFEAARHDIPVVLNLDHGLHFE-AVVRALRLGFSSVMFD 104 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEE-EeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHH-HHHHHHHhCCcEEEEc
Confidence 445566666666555655442 22222222234444 44566778889999999973333332 2344566677543221
Q ss_pred cccCChHHHHHHHHHHHHHHHhcCCCE
Q 020079 260 ALSRPPLLEGEATTRAIRLAEFVNTPL 286 (331)
Q Consensus 260 ~~~~~~~~e~~~i~~~~~l~~~~g~~~ 286 (331)
....|........++..++++.+|+.+
T Consensus 105 ~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 105 GSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 222332222334567778888888765
No 394
>PRK06801 hypothetical protein; Provisional
Probab=41.27 E-value=1.6e+02 Score=26.43 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 212 INDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 212 ~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
.+.+.++++++.|++.+.|+.+-.
T Consensus 26 ~n~e~~~avi~AAe~~~~PvIl~~ 49 (286)
T PRK06801 26 LDSHFLRALFAAAKQERSPFIINI 49 (286)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEe
Confidence 478999999999999999998764
No 395
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=41.27 E-value=2.6e+02 Score=24.97 Aligned_cols=109 Identities=5% Similarity=-0.044 Sum_probs=56.8
Q ss_pred ChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHH-HHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccc
Q 020079 181 DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLI-EGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGH 259 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~-~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~ 259 (331)
+.+..+.+.+.+++.+...|- .+++........+.+. -+...|++...||.+|..-....+ ......+.|+.+-=.=
T Consensus 25 n~e~~~avi~AAee~~sPvIl-q~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e-~i~~ai~~GFtSVM~D 102 (282)
T TIGR01858 25 NLETIQAVVETAAEMRSPVIL-AGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLDHHESLD-DIRQKVHAGVRSAMID 102 (282)
T ss_pred CHHHHHHHHHHHHHhCCCEEE-EeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHH-HHHHHHHcCCCEEeec
Confidence 345556666666555555442 2222222223445444 455577888999999973222222 2344566777542111
Q ss_pred cccCChHHHHHHHHHHHHHHHhcCCCE--EEEeC
Q 020079 260 ALSRPPLLEGEATTRAIRLAEFVNTPL--YVVHV 291 (331)
Q Consensus 260 ~~~~~~~~e~~~i~~~~~l~~~~g~~~--~i~H~ 291 (331)
....|-..-....++..+++...|+.+ .+.|+
T Consensus 103 gS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~v 136 (282)
T TIGR01858 103 GSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRL 136 (282)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEec
Confidence 112232222334577888888888653 34454
No 396
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=41.05 E-value=2.1e+02 Score=25.34 Aligned_cols=92 Identities=20% Similarity=0.130 Sum_probs=52.8
Q ss_pred hhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc-CCchhhHHHHHHHHHcCCCCccccc
Q 020079 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGHA 260 (331)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~~~~~~~G~~~~~~~~ 260 (331)
++..+...+++++.|+.++|+ . +.+++...++.+.+.|+||+.|. -+++..... .|. ..
T Consensus 93 ~~av~~a~r~~~~aGa~aVki--E-------dg~~~~~~I~al~~agIpV~gHiGL~pq~~~~~------gg~-----~i 152 (264)
T PRK00311 93 EQALRNAGRLMKEAGAHAVKL--E-------GGEEVAETIKRLVERGIPVMGHLGLTPQSVNVL------GGY-----KV 152 (264)
T ss_pred HHHHHHHHHHHHHhCCeEEEE--c-------CcHHHHHHHHHHHHCCCCEeeeecccceeeccc------CCe-----ee
Confidence 344566677775689999875 2 12456667777788999999996 333322100 000 01
Q ss_pred ccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCH
Q 020079 261 LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM 294 (331)
Q Consensus 261 ~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~ 294 (331)
.+++... ...+-+......+.|+-..+.-+...
T Consensus 153 ~grt~~~-a~~~i~ra~a~~eAGA~~i~lE~v~~ 185 (264)
T PRK00311 153 QGRDEEA-AEKLLEDAKALEEAGAFALVLECVPA 185 (264)
T ss_pred ecCCHHH-HHHHHHHHHHHHHCCCCEEEEcCCCH
Confidence 1233221 23344455666778988777766544
No 397
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=40.95 E-value=2.7e+02 Score=24.93 Aligned_cols=52 Identities=8% Similarity=-0.130 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc-C-CcEEEEcCCchhh
Q 020079 186 DEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL-G-ALAMVHAENGDAV 241 (331)
Q Consensus 186 ~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~-g-~~v~~H~e~~~~~ 241 (331)
+.++.+. +.|++.|.+- +. .-..++..+..+++..++. + +++.+|+.+....
T Consensus 159 ~~~~~~~-~~G~d~i~l~-DT--~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gl 212 (287)
T PRK05692 159 DVAERLF-ALGCYEISLG-DT--IGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQ 212 (287)
T ss_pred HHHHHHH-HcCCcEEEec-cc--cCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCc
Confidence 3333443 6788876432 11 2234677887877776654 4 7899998776543
No 398
>PRK06846 putative deaminase; Validated
Probab=40.67 E-value=3.1e+02 Score=25.69 Aligned_cols=106 Identities=9% Similarity=0.037 Sum_probs=54.2
Q ss_pred HHHHHHHHcCCcEEE----Ec---CCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCC--CEEEE
Q 020079 219 EGFKRCKSLGALAMV----HA---ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT--PLYVV 289 (331)
Q Consensus 219 ~~~~~A~~~g~~v~~----H~---e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~--~~~i~ 289 (331)
++++.+.+.|..+.. |. ...+......+...+.|+.-.-+......+ ....+++.++++.+.|. +++++
T Consensus 179 ~lL~~al~~Ga~~i~gl~p~~~~~~~~~~l~~~~~lA~~~g~~v~~Hv~e~~~~--~~~~~~~~~~~~~~~gl~~~v~~~ 256 (410)
T PRK06846 179 PLMREAMKMGAHLVGGVDPASVDGAIEKSLDTMFQIAVDFNKGVDIHLHDTGPL--GVATIKYLVETTEEAQWKGKVTIS 256 (410)
T ss_pred HHHHHHHHcCCCEEeCCCCccCCcCHHHHHHHHHHHHHHhCCCcEEEECCCCCh--hHHHHHHHHHHHHHhCCCCCEEEE
Confidence 555666666654443 21 112234444455667676543222111111 12233455566666553 89999
Q ss_pred eCCC-----HHHH-HHHHHHHHcCCCEEEecCCccccchhhhhh
Q 020079 290 HVMS-----MDAM-EEIAKARKAGPNFLNTTIPLCDSCSNIIRM 327 (331)
Q Consensus 290 H~~~-----~~~~-~~i~~~~~~Gi~v~~~~~p~~~~~~~~~~~ 327 (331)
||.. .+.+ +.++++++.|+.|+.. +|.......+.+|
T Consensus 257 H~~~l~~~~~~e~~~li~~la~~g~~v~~~-~~~~~g~~p~~~l 299 (410)
T PRK06846 257 HAFALGDLNEEEVEELAERLAAQGISITST-VPIGRLHMPIPLL 299 (410)
T ss_pred ecchhhcCCHHHHHHHHHHHHHcCCeEEEe-CCCCCCCCCHHHH
Confidence 9974 2222 3467899999988743 3433334444444
No 399
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=40.36 E-value=2.3e+02 Score=24.11 Aligned_cols=180 Identities=12% Similarity=-0.001 Sum_probs=85.5
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccce--eeccccccc-cCCChhhHHHHHHHHHHhCCC
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSC--MDYGFHMAI-TKWDEVVSDEMEVMVKEKGIN 198 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ 198 (331)
...++.....+.+.++|+.++.-... ................ ++.....+. .........++++.. +.|++
T Consensus 18 ~~~~d~~~~~~~~~~~g~~av~v~~~-----~~~~~~~~~~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~-~~Ga~ 91 (235)
T cd00958 18 PGLEDPEETVKLAAEGGADAVALTKG-----IARAYGREYAGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAV-RLGAD 91 (235)
T ss_pred ccccCHHHHHHHHHhcCCCEEEeChH-----HHHhcccccCCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHH-HCCCC
Confidence 34556666688899999988863211 1111111000010101 111111111 122233344566666 78999
Q ss_pred eEEEEEecCCCC-cCCHHHHHHHHHHHHHcCCcEEEEcC----------CchhhHHHHHHHHHcCCCCcccccccCChHH
Q 020079 199 SFKFFMAYKGSF-MINDELLIEGFKRCKSLGALAMVHAE----------NGDAVFEGQKRMIELGITGPEGHALSRPPLL 267 (331)
Q Consensus 199 ~ik~~~~~~~~~-~~~~~~l~~~~~~A~~~g~~v~~H~e----------~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 267 (331)
.+.+........ ..-.+.+.++.+.|+++|+++.+-.. +..++....+...+.|..--... .+.
T Consensus 92 ~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~---~~~-- 166 (235)
T cd00958 92 AVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTK---YTG-- 166 (235)
T ss_pred EEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEec---CCC--
Confidence 886655433211 11134677888888999999876321 12333332333445554322211 111
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCC----HHHHHHHHHHHHcCCC-EEEecC
Q 020079 268 EGEATTRAIRLAEFVNTPLYVVHVMS----MDAMEEIAKARKAGPN-FLNTTI 315 (331)
Q Consensus 268 e~~~i~~~~~l~~~~g~~~~i~H~~~----~~~~~~i~~~~~~Gi~-v~~~~~ 315 (331)
.++..-++.+....++.+.-... .+.++.++++.+.|.. |.++..
T Consensus 167 ---~~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~ 216 (235)
T cd00958 167 ---DAESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRN 216 (235)
T ss_pred ---CHHHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechh
Confidence 12222234444557765544321 2345667888888875 344333
No 400
>PRK07213 chlorohydrolase; Provisional
Probab=40.15 E-value=45 Score=30.98 Aligned_cols=45 Identities=11% Similarity=0.163 Sum_probs=30.6
Q ss_pred HHHHHhcCCC-EEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079 276 IRLAEFVNTP-LYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN 323 (331)
Q Consensus 276 ~~l~~~~g~~-~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~ 323 (331)
++.+.+.|.. -.+.|+...+. +.+++++++|+.|. .||..+..++
T Consensus 218 v~~~~~~G~~~~~i~H~~~~~~-~~i~~la~~g~~v~--~~P~sn~~l~ 263 (375)
T PRK07213 218 IERLINLGFKPDFIVHATHPSN-DDLELLKENNIPVV--VCPRANASFN 263 (375)
T ss_pred HHHHHhcCCCCCEEEECCCCCH-HHHHHHHHcCCcEE--ECCcchhhhc
Confidence 3445555653 13799876555 66999999998776 7787765543
No 401
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=40.12 E-value=2.9e+02 Score=25.11 Aligned_cols=39 Identities=8% Similarity=-0.046 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCCCEEEEeC------CCHHHH-HHHHHHHHcCCC
Q 020079 271 ATTRAIRLAEFVNTPLYVVHV------MSMDAM-EEIAKARKAGPN 309 (331)
Q Consensus 271 ~i~~~~~l~~~~g~~~~i~H~------~~~~~~-~~i~~~~~~Gi~ 309 (331)
.+.+.++.+.+.|..+...-. .+.+.+ +.++.+.+.|+.
T Consensus 215 ~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~ 260 (321)
T TIGR03822 215 EARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIK 260 (321)
T ss_pred HHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCe
Confidence 455566777788876543221 123333 356677788875
No 402
>PRK08445 hypothetical protein; Provisional
Probab=39.98 E-value=3e+02 Score=25.33 Aligned_cols=123 Identities=14% Similarity=0.064 Sum_probs=63.6
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCC----cHHHHHHHHHHHhccceeeccccc------cccCCChhhHHHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPING----SLTAGFEAYEKKAKNSCMDYGFHM------AITKWDEVVSDEMEVM 191 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 191 (331)
.+++++....+.+...|.+.++-.+...+. ...+.++..++..+...+...... ...... ..+.++++
T Consensus 73 l~~eeI~~~~~~a~~~g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~--~~e~L~~L 150 (348)
T PRK08445 73 LSFEEIDKKIEELLAIGGTQILFQGGVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKIS--IKEVLERL 150 (348)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCC--HHHHHHHH
Confidence 367888888888888999988643322222 223444444444432221100000 000011 13455566
Q ss_pred HHHhCCCeEE-EEEe---c-----CCCCcCCHHHHHHHHHHHHHcCCcEEE-----EcCCchhhHHHHHH
Q 020079 192 VKEKGINSFK-FFMA---Y-----KGSFMINDELLIEGFKRCKSLGALAMV-----HAENGDAVFEGQKR 247 (331)
Q Consensus 192 ~~~~g~~~ik-~~~~---~-----~~~~~~~~~~l~~~~~~A~~~g~~v~~-----H~e~~~~~~~~~~~ 247 (331)
. +.|.+.+- .... . -.+..++.+...+.++.|++.|+++.. |.|+.+...+....
T Consensus 151 k-eAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~G~~Et~edr~~~l~~ 219 (348)
T PRK08445 151 Q-AKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMFGTVENDEEIIEHWER 219 (348)
T ss_pred H-HcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEecCCCCHHHHHHHHHH
Confidence 5 67776442 1111 0 112345667778999999999998644 55555444444333
No 403
>PF08057 Ery_res_leader2: Erythromycin resistance leader peptide; InterPro: IPR012559 This family consists of erythromycin resistance gene leader peptides. These leader peptides are involved in the transcriptional attenuation control of the synthesis of the macrolide-lincosamide -streptogramin B resistance protein. It acts as a transcriptional attenuator, in contrast to other inducible erm genes. The mRNA leader sequence can fold in either of two mutually exclusive conformations, one of which is postulated to form in the absence of induction, and to contain two rho factor-independent terminators [].; GO: 0046677 response to antibiotic
Probab=39.97 E-value=6.6 Score=17.21 Aligned_cols=9 Identities=56% Similarity=0.737 Sum_probs=5.7
Q ss_pred CccchhHHH
Q 020079 1 MIHSMASAF 9 (331)
Q Consensus 1 ~~~~~~~~~ 9 (331)
|-|||+-|+
T Consensus 1 mthsmrlrf 9 (14)
T PF08057_consen 1 MTHSMRLRF 9 (14)
T ss_pred Cccceeeec
Confidence 567876554
No 404
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=39.77 E-value=2.8e+02 Score=24.83 Aligned_cols=108 Identities=11% Similarity=0.018 Sum_probs=57.1
Q ss_pred ChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCC--HHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCccc
Q 020079 181 DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMIN--DELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 258 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~--~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~ 258 (331)
+-+..+.+-+.+++.+...|- -.+..+..... .....-+...|+++++||.+|..-....+.+ ....+.|+.+-=.
T Consensus 27 nlE~~~AileaA~e~~sPvIi-q~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlDHg~~~~~~-~~ai~~GFsSvMi 104 (286)
T COG0191 27 NLETLQAILEAAEEEKSPVII-QFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLDHGASFEDC-KQAIRAGFSSVMI 104 (286)
T ss_pred CHHHHHHHHHHHHHhCCCEEE-EecccHHHHhchHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH-HHHHhcCCceEEe
Confidence 345556666666455555442 22332222333 3444556778899999999997333222222 3334556543211
Q ss_pred ccccCChHHHHHHHHHHHHHHHhcCCCEEEEe
Q 020079 259 HALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290 (331)
Q Consensus 259 ~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H 290 (331)
=+.+.|..--....++.++++...|+.+...=
T Consensus 105 DgS~~~~eENi~~tkevv~~ah~~gvsVEaEl 136 (286)
T COG0191 105 DGSHLPFEENIAITKEVVEFAHAYGVSVEAEL 136 (286)
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 11112322222334778899999988765543
No 405
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=39.68 E-value=2.9e+02 Score=25.02 Aligned_cols=39 Identities=15% Similarity=0.037 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCCCEEEE----eCCCH-HHHHHHHHHHHcCCC
Q 020079 271 ATTRAIRLAEFVNTPLYVV----HVMSM-DAMEEIAKARKAGPN 309 (331)
Q Consensus 271 ~i~~~~~l~~~~g~~~~i~----H~~~~-~~~~~i~~~~~~Gi~ 309 (331)
.+.+.++.+.+.|.++.+. +..+. +-.+.++.+++.|+.
T Consensus 150 ~~l~~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~ 193 (318)
T TIGR03470 150 RAVEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVD 193 (318)
T ss_pred HHHHHHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCC
Confidence 4556777777788776553 22233 334567778888984
No 406
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=39.22 E-value=44 Score=29.17 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=25.5
Q ss_pred CCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccc
Q 020079 283 NTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSC 321 (331)
Q Consensus 283 g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~ 321 (331)
+... +.|+...+. +.++++++.|+.++ .||..+..
T Consensus 164 ~~~~-i~H~~~l~~-~~~~~la~~g~~v~--~~P~sn~~ 198 (263)
T cd01305 164 EPDL-LVHGTHLTD-EDLELVRENGVPVV--LCPRSNLY 198 (263)
T ss_pred CCCE-EEEcCCCCH-HHHHHHHHcCCcEE--EChhhHHH
Confidence 5554 788876555 67999999998887 67866553
No 407
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=38.88 E-value=2.1e+02 Score=27.10 Aligned_cols=97 Identities=7% Similarity=0.013 Sum_probs=57.6
Q ss_pred HHHHHHHhCCceEEe-cCcCCCCCcHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEecC
Q 020079 129 SGQAAALAGGTTMHI-DFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK 207 (331)
Q Consensus 129 ~~~~~~l~~GvTtv~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~ 207 (331)
.........|+-.++ |.......-..+.++..++..+...+-. .+--..+..++++ ..|++++++.++..
T Consensus 254 ~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~Via--------GNVVT~~qa~nLI-~aGaDgLrVGMGsG 324 (503)
T KOG2550|consen 254 ERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIA--------GNVVTKEQAANLI-AAGADGLRVGMGSG 324 (503)
T ss_pred HHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhhCCCceeec--------cceeeHHHHHHHH-HccCceeEeccccC
Confidence 335566788998776 5543333344566666666655422111 0111123445677 78999999988764
Q ss_pred CCCc---------CCHHHHHHHHHHHHHcCCcEEEE
Q 020079 208 GSFM---------INDELLIEGFKRCKSLGALAMVH 234 (331)
Q Consensus 208 ~~~~---------~~~~~l~~~~~~A~~~g~~v~~H 234 (331)
.... ...-.+-+..+.|+++|.|+..-
T Consensus 325 SiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviAD 360 (503)
T KOG2550|consen 325 SICITQKVMACGRPQGTAVYKVAEFANQFGVPCIAD 360 (503)
T ss_pred ceeeeceeeeccCCcccchhhHHHHHHhcCCceeec
Confidence 3211 11234668899999999998765
No 408
>PRK05926 hypothetical protein; Provisional
Probab=38.87 E-value=3.3e+02 Score=25.40 Aligned_cols=132 Identities=11% Similarity=0.013 Sum_probs=67.5
Q ss_pred CCChhhHHHHHHHHHhCCceEEecCcCCCCC-c---HHHHHHHHHHHhccceeeccccccc----cCCChhhHHHHHHHH
Q 020079 121 SETIDDFFSGQAAALAGGTTMHIDFVIPING-S---LTAGFEAYEKKAKNSCMDYGFHMAI----TKWDEVVSDEMEVMV 192 (331)
Q Consensus 121 ~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 192 (331)
..+++++...++.+ ..|+|.+.=..+..+. . ..+.++..++..+...+........ ....-...+.++++.
T Consensus 98 ~ls~eeI~~~a~~a-~~G~~ei~iv~G~~p~~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~Lk 176 (370)
T PRK05926 98 FYTPDQLVQSIKEN-PSPITETHIVAGCFPSCNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLK 176 (370)
T ss_pred cCCHHHHHHHHHHH-hcCCCEEEEEeCcCCCCCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHH
Confidence 35678887777777 6899987743322222 1 2333444443322211111100000 000001122344454
Q ss_pred HHhCCCeEEEE-E---ec-----CCCCcCCHHHHHHHHHHHHHcCCcE-----EEEcCCchhhHHHHHHHHHcCCC
Q 020079 193 KEKGINSFKFF-M---AY-----KGSFMINDELLIEGFKRCKSLGALA-----MVHAENGDAVFEGQKRMIELGIT 254 (331)
Q Consensus 193 ~~~g~~~ik~~-~---~~-----~~~~~~~~~~l~~~~~~A~~~g~~v-----~~H~e~~~~~~~~~~~~~~~G~~ 254 (331)
+.|.+.+... . .. ..+..++.+...+.++.|++.|+++ ..|.|+.++.-+....+.+.+..
T Consensus 177 -eAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~sgmi~G~gEt~edrv~~l~~Lr~Lq~~ 251 (370)
T PRK05926 177 -IAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNATMLCYHRETPEDIVTHMSKLRALQDK 251 (370)
T ss_pred -HcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccCceEEeCCCCHHHHHHHHHHHHhcCCc
Confidence 6676544211 0 00 1123456677789999999999865 55888887776666666665553
No 409
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=38.84 E-value=3.4e+02 Score=25.60 Aligned_cols=101 Identities=12% Similarity=0.011 Sum_probs=46.7
Q ss_pred HHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceee-cccc-------ccccC-CChhhHHHHHHHHHHhCCCeE
Q 020079 130 GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMD-YGFH-------MAITK-WDEVVSDEMEVMVKEKGINSF 200 (331)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~-~~~~~~~~~~~~~~~~g~~~i 200 (331)
-++.+.+.|.-|+.|.....+ ..+.-+...+..+ .++. ++.+ ..... ..++.++.+++.+ +.|++.+
T Consensus 81 K~~~A~~~GADtvMDLStggd--l~~iR~~il~~~~-vpvGTVPiYqa~~~~~~~~~~~t~d~~~~~ie~qa-~~GVDfm 156 (420)
T PF01964_consen 81 KLKIAEKAGADTVMDLSTGGD--LDEIRRAILENSP-VPVGTVPIYQAAIRKGGSIVDMTEDDFFDVIEKQA-KDGVDFM 156 (420)
T ss_dssp HHHHHHHTT-SEEEE---STT--HHHHHHHHHHT-S-S-EEE-HHHHHHHHTTT-GGG--HHHHHHHHHHHH-HHT--EE
T ss_pred HHHHHHHhCCCEEEEcCCCCC--HHHHHHHHHHhCC-CccccchHHHHHHHhCCChhhCCHHHHHHHHHHHH-HcCCCEE
Confidence 356688999999999865543 2222222222221 1111 1111 11111 2345567777777 7899988
Q ss_pred EEEEecC----------C---------------------CCcCCHHHHHHHHHHHHHcCCcEEEE
Q 020079 201 KFFMAYK----------G---------------------SFMINDELLIEGFKRCKSLGALAMVH 234 (331)
Q Consensus 201 k~~~~~~----------~---------------------~~~~~~~~l~~~~~~A~~~g~~v~~H 234 (331)
.+..+-. + ..+.=-+.+..+++.++++++.+..-
T Consensus 157 tiH~git~~~~~~~~~~~R~~giVSRGGs~l~~WM~~n~~ENPly~~fD~lLeI~k~yDVtLSLG 221 (420)
T PF01964_consen 157 TIHCGITRETLERLKKSGRIMGIVSRGGSILAAWMLHNGKENPLYEHFDRLLEIAKEYDVTLSLG 221 (420)
T ss_dssp EE-TT--GGGGGGGT--TSSS----HHHHHHHHHHHHHTS--HHHHTHHHHHHHHTTTT-EEEE-
T ss_pred EEccchhHHHHHHHhhhccccCccccchHHHHHHHHhcCCcCcHHHhHHHHHHHHHHhCeeEecc
Confidence 6654320 0 00001245788899999998888764
No 410
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=38.36 E-value=3.5e+02 Score=25.64 Aligned_cols=18 Identities=28% Similarity=0.408 Sum_probs=15.7
Q ss_pred EeCCCCeeeccccccccc
Q 020079 96 LDATGKFVMPGGIDPHTH 113 (331)
Q Consensus 96 id~~g~~v~PG~ID~H~H 113 (331)
.+.++-+++|||||.-++
T Consensus 30 LtynDfliLPg~idF~s~ 47 (503)
T KOG2550|consen 30 LTYNDFLILPGFIDFASD 47 (503)
T ss_pred ccccceeecccccccccc
Confidence 677788999999998888
No 411
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=38.30 E-value=1.4e+02 Score=23.31 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=21.6
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 211 MINDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 211 ~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
.+..+.|.+++++|++.|+.+.+..
T Consensus 40 ~L~~Dllge~v~a~h~~Girv~ay~ 64 (132)
T PF14871_consen 40 GLKRDLLGEQVEACHERGIRVPAYF 64 (132)
T ss_pred CCCcCHHHHHHHHHHHCCCEEEEEE
Confidence 3457899999999999999998874
No 412
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=37.70 E-value=3.3e+02 Score=25.02 Aligned_cols=178 Identities=13% Similarity=0.009 Sum_probs=93.3
Q ss_pred CChhhHHHHHHHHHhCCceEEecCc-----------CCCCCcHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFV-----------IPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEV 190 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (331)
.+.++...-.+.+.+.||..+---+ .+......+.++......++..+......+. ...++++.
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~-----~~~~dl~~ 96 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGI-----GTVDDLKM 96 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCc-----ccHHHHHH
Confidence 4566666677778888988764311 1111134455555544433322221111111 01345666
Q ss_pred HHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEE-----cCCchhhHHHHHHHHHcCCCCcc---ccccc
Q 020079 191 MVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH-----AENGDAVFEGQKRMIELGITGPE---GHALS 262 (331)
Q Consensus 191 ~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H-----~e~~~~~~~~~~~~~~~G~~~~~---~~~~~ 262 (331)
.. +.|++.+.++.... ..+...+.++.|++.|+.+.+- ..+++...+..+.+.+.|...-. ..+..
T Consensus 97 a~-~~gvd~iri~~~~~-----e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~ 170 (337)
T PRK08195 97 AY-DAGVRVVRVATHCT-----EADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSAGAL 170 (337)
T ss_pred HH-HcCCCEEEEEEecc-----hHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCC
Confidence 66 78999887764321 3467889999999999877653 23344444444556666654311 11112
Q ss_pred CChHHHHHHHHHHHHHHHh-c--CCCEE-EEeCCCHHHHHHHHHHHHcCCCEEEecCC
Q 020079 263 RPPLLEGEATTRAIRLAEF-V--NTPLY-VVHVMSMDAMEEIAKARKAGPNFLNTTIP 316 (331)
Q Consensus 263 ~~~~~e~~~i~~~~~l~~~-~--g~~~~-i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p 316 (331)
.| ..+.+.+..+++ . +.++. .+|...+-+++-.-.+-+.|+.. +|++.
T Consensus 171 ~P-----~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~-iD~Sl 222 (337)
T PRK08195 171 LP-----EDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGATR-IDGSL 222 (337)
T ss_pred CH-----HHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCCE-EEecC
Confidence 22 334444444443 2 33332 23655555556566666788773 44443
No 413
>TIGR02022 hutF formiminoglutamate deiminase. In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.
Probab=37.69 E-value=34 Score=32.79 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=28.5
Q ss_pred cCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 282 VNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 282 ~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
.+.++.+.||...+. +.++.+++.|+.|+ .||.++..+
T Consensus 263 l~~~~~~~H~~~l~~-~d~~~la~~g~~v~--~~P~sn~~l 300 (455)
T TIGR02022 263 VDARWCLVHATHLTD-EETALLARSGAVAG--LCPTTEANL 300 (455)
T ss_pred CCCCEEEEEeecCCH-HHHHHHHHcCCeEE--EChhhhccc
Confidence 456788999976554 67888999997776 788876543
No 414
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=37.58 E-value=1.5e+02 Score=25.82 Aligned_cols=105 Identities=17% Similarity=0.216 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeC
Q 020079 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (331)
Q Consensus 212 ~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~ 291 (331)
++.+.+.++.+.|++.|+.+..=+-+.+.++. +.+.|+..-+.... + ..-..+++.+.+.|.++.++=.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~----l~~~~~~~~KIaS~------d-l~n~~lL~~~A~tgkPvIlSTG 121 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDF----LEELGVPAYKIASG------D-LTNLPLLEYIAKTGKPVILSTG 121 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHH----HHHHT-SEEEE-GG------G-TT-HHHHHHHHTT-S-EEEE-T
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHH----HHHcCCCEEEeccc------c-ccCHHHHHHHHHhCCcEEEECC
Confidence 57889999999999999998777655555443 34445433221111 0 0112355677778999888765
Q ss_pred CC-HHHHH-HHHHHH-HcCCCEEE----ecCCccccchhhhhh
Q 020079 292 MS-MDAME-EIAKAR-KAGPNFLN----TTIPLCDSCSNIIRM 327 (331)
Q Consensus 292 ~~-~~~~~-~i~~~~-~~Gi~v~~----~~~p~~~~~~~~~~~ 327 (331)
.+ .+.++ .++.++ +.+.+++. ..||.-....|+..|
T Consensus 122 ~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i 164 (241)
T PF03102_consen 122 MSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVI 164 (241)
T ss_dssp T--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHH
Confidence 33 22222 344453 34455553 345666665665554
No 415
>PLN02389 biotin synthase
Probab=37.38 E-value=3.5e+02 Score=25.34 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHHhCCCeEEEEEecCCCCc--CCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcc
Q 020079 180 WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM--INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPE 257 (331)
Q Consensus 180 ~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~--~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~ 257 (331)
..++..+.+++.. +.|+..+-...++.+... ..-+.+.++++..++.++. +++.......+..+.+.+.|+..-.
T Consensus 117 s~EeIl~~a~~~~-~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~--i~~s~G~l~~E~l~~LkeAGld~~~ 193 (379)
T PLN02389 117 SKDDVLEAAKRAK-EAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGME--VCCTLGMLEKEQAAQLKEAGLTAYN 193 (379)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcE--EEECCCCCCHHHHHHHHHcCCCEEE
Q ss_pred cccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEe
Q 020079 258 GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNT 313 (331)
Q Consensus 258 ~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~ 313 (331)
+.....+.. .+-.....+...-++.++.+++.|+++.+.
T Consensus 194 ~~LeTs~~~-----------------y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg 232 (379)
T PLN02389 194 HNLDTSREY-----------------YPNVITTRSYDDRLETLEAVREAGISVCSG 232 (379)
T ss_pred eeecCChHH-----------------hCCcCCCCCHHHHHHHHHHHHHcCCeEeEE
No 416
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=37.05 E-value=3.3e+02 Score=25.79 Aligned_cols=107 Identities=13% Similarity=0.122 Sum_probs=54.5
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCC---cHHHHHHHHHHH----hccceeeccccccccCCChhhHHHHHHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPING---SLTAGFEAYEKK----AKNSCMDYGFHMAITKWDEVVSDEMEVMVKE 194 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (331)
.+++.+...+...+.+|+--+-|-....+. ...+.+....+. .....-...+...++...++..+..+... +
T Consensus 147 Lsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~~~em~~ra~~a~-~ 225 (407)
T PRK09549 147 RDLDYLKEQLRDQALGGVDLVKDDEILFENALTPFEKRIVAGKEVLQEVYETTGHKTLYAVNLTGRTFELKEKAKRAA-E 225 (407)
T ss_pred CCHHHHHHHHHHHHhcCCcceecCcCCCCCCCcCHHHHHHHHHHHHHHHHHhhCCcceEEEecCCCHHHHHHHHHHHH-H
Confidence 577888788888899998887766443332 334433333222 21111111122233333344444444444 5
Q ss_pred hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
.|...+-+ ++ ....-..++.+.+. .+.+++++.|-
T Consensus 226 ~G~~~~m~--~~---~~~G~~al~~l~~~-~~~~lpIhaHr 260 (407)
T PRK09549 226 AGADALLF--NV---FAYGLDVLQSLAED-PEIPVPIMAHP 260 (407)
T ss_pred cCCCeEEE--ec---cccchHHHHHHHhc-CCCCcEEEecC
Confidence 77765533 21 11223445555432 35688999994
No 417
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=36.92 E-value=2.7e+02 Score=23.86 Aligned_cols=70 Identities=23% Similarity=0.220 Sum_probs=48.4
Q ss_pred HHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHH
Q 020079 190 VMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEG 269 (331)
Q Consensus 190 ~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~ 269 (331)
.+.++.|...+|+|.-. + .-..++++++.+.|.++|..+ |-...++ .
T Consensus 142 aml~dmG~~SiKffPM~-G--l~~leE~~avA~aca~~g~~l----EPTGGId--------------------------l 188 (236)
T TIGR03581 142 AMLKDMGGSSVKFFPMG-G--LKHLEEYAAVAKACAKHGFYL----EPTGGID--------------------------L 188 (236)
T ss_pred HHHHHcCCCeeeEeecC-C--cccHHHHHHHHHHHHHcCCcc----CCCCCcc--------------------------H
Confidence 44447899999987422 2 235799999999999999873 3222111 3
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCC
Q 020079 270 EATTRAIRLAEFVNTPLYVVHVM 292 (331)
Q Consensus 270 ~~i~~~~~l~~~~g~~~~i~H~~ 292 (331)
+.+++.++.+.+.|++-.+=|+-
T Consensus 189 ~Nf~~I~~i~ldaGv~kviPHIY 211 (236)
T TIGR03581 189 DNFEEIVQIALDAGVEKVIPHVY 211 (236)
T ss_pred HhHHHHHHHHHHcCCCeeccccc
Confidence 44566778888899988888864
No 418
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=36.81 E-value=2.8e+02 Score=24.06 Aligned_cols=106 Identities=12% Similarity=0.058 Sum_probs=56.9
Q ss_pred hhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccc
Q 020079 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (331)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~ 261 (331)
++..+.++++. +.|+.++++ .. ..++.+.++.+++.++++..|........ ...|- .+..
T Consensus 89 ~~~~~~~~~l~-~aGa~gv~i--ED-------~~~~~~~i~ai~~a~i~ViaRtd~~pq~~------~~~gg--~~~~-- 148 (240)
T cd06556 89 TAAFELAKTFM-RAGAAGVKI--EG-------GEWHIETLQMLTAAAVPVIAHTGLTPQSV------NTSGG--DEGQ-- 148 (240)
T ss_pred HHHHHHHHHHH-HcCCcEEEE--cC-------cHHHHHHHHHHHHcCCeEEEEeCCchhhh------hccCC--ceee--
Confidence 45667777777 689999875 21 13445567777888899999975432110 00000 0000
Q ss_pred cCChHHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHH-HcCCCEE
Q 020079 262 SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKAR-KAGPNFL 311 (331)
Q Consensus 262 ~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~-~~Gi~v~ 311 (331)
.+....-.+++++ .....+.|+...+.++... +.+++.. +-.+++.
T Consensus 149 ~~~~~~~~~ai~R-a~ay~~AGAd~i~~e~~~~---e~~~~i~~~~~~P~~ 195 (240)
T cd06556 149 YRGDEAGEQLIAD-ALAYAPAGADLIVMECVPV---ELAKQITEALAIPLA 195 (240)
T ss_pred ccCHHHHHHHHHH-HHHHHHcCCCEEEEcCCCH---HHHHHHHHhCCCCEE
Confidence 1111111233343 4556677888888887633 3344433 3456654
No 419
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=36.59 E-value=30 Score=32.98 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=27.9
Q ss_pred CCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 283 NTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 283 g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
+.++.++||...+. +.++++++.|+.|+ .||.++..+
T Consensus 246 ~~~~~~~H~~~l~~-~d~~~la~~g~~v~--~~P~sn~~l 282 (435)
T PRK15493 246 KRPTVIAHGVVLND-NERAFLAEHDVRVA--HNPNSNLKL 282 (435)
T ss_pred CCCcEEEEeecCCH-HHHHHHHHcCCeEE--EChHHHHHH
Confidence 45778999876555 56788899998777 789887543
No 420
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=36.47 E-value=3.1e+02 Score=24.41 Aligned_cols=125 Identities=15% Similarity=0.128 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhCCCeEEEEEecCC-----CCcCC----HHHHHHHHHHHHHcCCcEEEEcCCchhh---H---HHHHH--
Q 020079 185 SDEMEVMVKEKGINSFKFFMAYKG-----SFMIN----DELLIEGFKRCKSLGALAMVHAENGDAV---F---EGQKR-- 247 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~~~~-----~~~~~----~~~l~~~~~~A~~~g~~v~~H~e~~~~~---~---~~~~~-- 247 (331)
.+.++... +.|++.+.++++-.. ....+ .+.+.++++.|+++|+.+.++.|+.... . .....
T Consensus 77 ~~die~A~-~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~d~~~~v~~~~~~~~ 155 (279)
T cd07947 77 KEDLKLVK-EMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLEDITRADIYGFVLPFVNKLM 155 (279)
T ss_pred HHHHHHHH-HcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEcccCCCcccchHHHHHHHH
Confidence 35566666 678888887764310 01122 3446778899999999999998654322 1 12222
Q ss_pred --HHHcCCC-Cc---ccccccCChH--HHHHHHHHHHHHHHh-cCCC---E-EEEeCCCHHHHHHHHHHHHcCCCE
Q 020079 248 --MIELGIT-GP---EGHALSRPPL--LEGEATTRAIRLAEF-VNTP---L-YVVHVMSMDAMEEIAKARKAGPNF 310 (331)
Q Consensus 248 --~~~~G~~-~~---~~~~~~~~~~--~e~~~i~~~~~l~~~-~g~~---~-~i~H~~~~~~~~~i~~~~~~Gi~v 310 (331)
..+.|.. .- ...+...|.. .....+.+.+..+++ .+.+ + ..+|++.+-+++-.-.+-+.|+..
T Consensus 156 ~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla~AN~laA~~aG~~~ 231 (279)
T cd07947 156 KLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKAVANAVAAWLYGASW 231 (279)
T ss_pred HHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEecCCCChHHHHHHHHHHhCCCE
Confidence 2335654 11 1222223311 111234444444433 2322 2 245766677777777778889875
No 421
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=36.40 E-value=3.8e+02 Score=25.98 Aligned_cols=99 Identities=13% Similarity=0.077 Sum_probs=55.8
Q ss_pred HHHHHHHHHhCCceEEe-cCcCCCCCcHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeEEEEEe
Q 020079 127 FFSGQAAALAGGTTMHI-DFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMA 205 (331)
Q Consensus 127 ~~~~~~~~l~~GvTtv~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~ 205 (331)
.......++..|+..+. |.....+....+.++..+...+..++-. + +-...+....+. +.|++.+++.++
T Consensus 226 ~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~----g----~~~t~~~~~~l~-~~G~d~i~vg~g 296 (475)
T TIGR01303 226 VGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVA----G----NVVSAEGVRDLL-EAGANIIKVGVG 296 (475)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEE----e----ccCCHHHHHHHH-HhCCCEEEECCc
Confidence 33446667889999876 6655333345555555555433222111 1 111234455666 789999997665
Q ss_pred cCCCC---------cCCHHHHHHHHHHHHHcCCcEEEE
Q 020079 206 YKGSF---------MINDELLIEGFKRCKSLGALAMVH 234 (331)
Q Consensus 206 ~~~~~---------~~~~~~l~~~~~~A~~~g~~v~~H 234 (331)
+.... ......+.++.+.++++++++..-
T Consensus 297 ~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viad 334 (475)
T TIGR01303 297 PGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWAD 334 (475)
T ss_pred CCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEe
Confidence 43211 112344556666778888888765
No 422
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=36.40 E-value=3.5e+02 Score=24.99 Aligned_cols=97 Identities=16% Similarity=0.113 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHcCCcEEE-EcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEe-CC
Q 020079 215 ELLIEGFKRCKSLGALAMV-HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH-VM 292 (331)
Q Consensus 215 ~~l~~~~~~A~~~g~~v~~-H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H-~~ 292 (331)
+.+.++++.|+++|.++++ |+.+.+.++.. ....+.|+........+ ..- .-++.+ ...+..+.+++ ..
T Consensus 172 ~~v~~~~~la~~~~~~i~i~h~ss~~~l~~i-~~~~~~G~~~~~e~~~h---~L~--ld~~~~---~~~~~~~k~~Pplr 242 (374)
T cd01317 172 IMVARDLELAEATGARVHFQHLSTARSLELI-RKAKAKGLPVTAEVTPH---HLL--LDDEAL---ESYDTNAKVNPPLR 242 (374)
T ss_pred HHHHHHHHHHHHhCCcEEEEeCCCHHHHHHH-HHHHHCCCCEEEEecHH---HHh--cCHHHH---hccCCceEEcCCCC
Confidence 4788899999999999988 67766554433 33455565432211111 100 001111 12344443332 12
Q ss_pred CHHHHHHHHHHHHcCCCEE--EecCCcccc
Q 020079 293 SMDAMEEIAKARKAGPNFL--NTTIPLCDS 320 (331)
Q Consensus 293 ~~~~~~~i~~~~~~Gi~v~--~~~~p~~~~ 320 (331)
.....+.+.++.+.|+.++ .|.+||...
T Consensus 243 ~~~~~~~l~~~~~~G~i~~igsDh~p~~~~ 272 (374)
T cd01317 243 SEEDREALIEALKDGTIDAIASDHAPHTDE 272 (374)
T ss_pred CHHHHHHHHHHHhcCCceEEEcCCCCCCHH
Confidence 3446678888888898754 577787653
No 423
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=36.14 E-value=2.2e+02 Score=26.02 Aligned_cols=15 Identities=7% Similarity=-0.020 Sum_probs=9.3
Q ss_pred HHHHHHHHcCCCEEE
Q 020079 298 EEIAKARKAGPNFLN 312 (331)
Q Consensus 298 ~~i~~~~~~Gi~v~~ 312 (331)
+.++.+++.|+.|=.
T Consensus 130 evv~~Ah~~GvsVEa 144 (321)
T PRK07084 130 KVVEYAHQFDVTVEG 144 (321)
T ss_pred HHHHHHHHcCCeEEE
Confidence 456666777766543
No 424
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=36.04 E-value=3e+02 Score=24.18 Aligned_cols=19 Identities=16% Similarity=0.001 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCCcEEE-Ec
Q 020079 217 LIEGFKRCKSLGALAMV-HA 235 (331)
Q Consensus 217 l~~~~~~A~~~g~~v~~-H~ 235 (331)
+.++++.++++|.++.+ |.
T Consensus 105 ~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 105 LEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred CHHHHHHHHHhCCCEEEEec
Confidence 55777888899998764 65
No 425
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=35.62 E-value=2.3e+02 Score=26.25 Aligned_cols=16 Identities=13% Similarity=0.054 Sum_probs=8.3
Q ss_pred HHHHHHHHcCCCEEEe
Q 020079 298 EEIAKARKAGPNFLNT 313 (331)
Q Consensus 298 ~~i~~~~~~Gi~v~~~ 313 (331)
+.++.++..|+.|=.+
T Consensus 127 evve~Ah~~GvsVEaE 142 (347)
T PRK13399 127 RVTEMAHAVGVSVEGE 142 (347)
T ss_pred HHHHHHHHcCCeEEEE
Confidence 3455556666555443
No 426
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=35.61 E-value=2.8e+02 Score=23.58 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHH
Q 020079 186 DEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226 (331)
Q Consensus 186 ~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~ 226 (331)
+++..+. +.|++.+.+.+.+.++...+.+..+++.+.+..
T Consensus 13 eda~~a~-~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~ 52 (208)
T COG0135 13 EDAKAAA-KAGADYIGFIFVPKSPRYVSPEQAREIASAVPK 52 (208)
T ss_pred HHHHHHH-HcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCC
Confidence 3444444 678888888877777778888888888887765
No 427
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=35.56 E-value=4.3e+02 Score=27.62 Aligned_cols=106 Identities=8% Similarity=0.005 Sum_probs=54.3
Q ss_pred HHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCCh-----hhHHHHHHHHHHhCCCe--EEE
Q 020079 131 QAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDE-----VVSDEMEVMVKEKGINS--FKF 202 (331)
Q Consensus 131 ~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~--ik~ 202 (331)
.+.+.++||--++-+-...+. +..-.+++.++.+.-.-...++.+...+... +....+.+-+.+.|... ||-
T Consensus 636 vkqaa~~GIDvFRiFDsLNwv~~M~vaidAV~e~gkv~EatiCYTGDildp~r~kY~L~YY~~lA~el~~~GaHIlaIKD 715 (1149)
T COG1038 636 VKQAAKSGIDVFRIFDSLNWVEQMRVAIDAVREAGKVAEATICYTGDILDPGRKKYTLDYYVKLAKELEKAGAHILAIKD 715 (1149)
T ss_pred HHHHHhcCccEEEeehhhcchhhhhhHHHHHHhcCCeEEEEEEeccccCCCCcccccHHHHHHHHHHHHhcCCcEEEehh
Confidence 466778888877743222222 4555667777766544455555554433221 12222222222567653 343
Q ss_pred EEecCCCCcCCHHHHHHHHH-HHHHcCCcEEEEcCCchhh
Q 020079 203 FMAYKGSFMINDELLIEGFK-RCKSLGALAMVHAENGDAV 241 (331)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~-~A~~~g~~v~~H~e~~~~~ 241 (331)
+.+ ..-+..-..++. +-.+.++|+|+|..+....
T Consensus 716 MAG-----LLKP~AA~~Li~aLr~~~dlPIHlHTHDTsG~ 750 (1149)
T COG1038 716 MAG-----LLKPAAAYRLISALRETVDLPIHLHTHDTSGN 750 (1149)
T ss_pred hhh-----ccCHHHHHHHHHHHHHhcCCceEEeccCCCcc
Confidence 221 123333334333 3345699999998766543
No 428
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=35.56 E-value=41 Score=32.19 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=27.5
Q ss_pred cCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccc
Q 020079 282 VNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSC 321 (331)
Q Consensus 282 ~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~ 321 (331)
.+.++.+.||...+. +.++++++.|+.|+ +||.++..
T Consensus 263 l~~~~~l~H~~~l~~-~d~~~la~~g~~v~--~~P~sn~~ 299 (456)
T PRK09229 263 VDARWCLVHATHLTD-AETARLARSGAVAG--LCPTTEAN 299 (456)
T ss_pred CCCCeEEEeeccCCH-HHHHHHHHcCCeEE--ECchhhhh
Confidence 356788999976555 66888999997766 78876543
No 429
>PRK07094 biotin synthase; Provisional
Probab=35.47 E-value=3.3e+02 Score=24.49 Aligned_cols=121 Identities=14% Similarity=0.054 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHH-cCCcEEEEcCCchhhHHHHHHHHHcCCCCcc----
Q 020079 183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKS-LGALAMVHAENGDAVFEGQKRMIELGITGPE---- 257 (331)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~---- 257 (331)
+..++++.+. +.|+..+.+. +.. ....+.+.+.++++..++ .++.+.++.... ..+..+.+.+.|+..-.
T Consensus 74 ei~~~~~~~~-~~g~~~i~l~-gG~-~~~~~~~~l~~l~~~i~~~~~l~i~~~~g~~--~~e~l~~Lk~aG~~~v~~glE 148 (323)
T PRK07094 74 EILECAKKAY-ELGYRTIVLQ-SGE-DPYYTDEKIADIIKEIKKELDVAITLSLGER--SYEEYKAWKEAGADRYLLRHE 148 (323)
T ss_pred HHHHHHHHHH-HCCCCEEEEe-cCC-CCCCCHHHHHHHHHHHHccCCceEEEecCCC--CHHHHHHHHHcCCCEEEeccc
Confidence 3444444444 4677665432 221 223456777888887777 466666554321 22334556666754211
Q ss_pred -----cccccCChHHHHHHHHHHHHHHHhcCCCE----EEEe-CCC-HHHHHHHHHHHHcCCC
Q 020079 258 -----GHALSRPPLLEGEATTRAIRLAEFVNTPL----YVVH-VMS-MDAMEEIAKARKAGPN 309 (331)
Q Consensus 258 -----~~~~~~~~~~e~~~i~~~~~l~~~~g~~~----~i~H-~~~-~~~~~~i~~~~~~Gi~ 309 (331)
.+...++. ...+...+.++.+.+.|..+ .+.+ .-+ .+-.+.++.+++.++.
T Consensus 149 s~~~~~~~~i~~~-~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~~ 210 (323)
T PRK07094 149 TADKELYAKLHPG-MSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELDLD 210 (323)
T ss_pred cCCHHHHHHhCCC-CCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhCCCC
Confidence 11111121 11234555667777777542 2222 212 3334567777777764
No 430
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=35.28 E-value=3e+02 Score=26.06 Aligned_cols=105 Identities=14% Similarity=0.026 Sum_probs=53.3
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCC---cHHHHHHHHHH----HhccceeeccccccccCCChhhHHHHHHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPING---SLTAGFEAYEK----KAKNSCMDYGFHMAITKWDEVVSDEMEVMVKE 194 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (331)
.+++++...+.....+|+--+-|-....+. ...+.+....+ ......-...+...++...++..+..+.+. +
T Consensus 156 lsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~~~em~~ra~~~~-~ 234 (406)
T cd08207 156 LTPEETAALVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHAQRTGRKVMYAFNITDDIDEMRRNHDLVV-E 234 (406)
T ss_pred CCHHHHHHHHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEecCCCHHHHHHHHHHHH-H
Confidence 567888777888899998777765433322 33333333222 221111111122223333344444444444 6
Q ss_pred hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
.|.+.+-+ ++. ...-..++.+. +..+++++.|-
T Consensus 235 ~G~~~~mv--~~~---~~G~~~l~~l~---~~~~l~IhaHr 267 (406)
T cd08207 235 AGGTCVMV--SLN---SVGLSGLAALR---RHSQLPIHGHR 267 (406)
T ss_pred hCCCeEEE--ecc---ccchHHHHHHH---hcCCceEEECC
Confidence 77776533 221 12233444443 35799999994
No 431
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=35.18 E-value=3.6e+02 Score=24.78 Aligned_cols=51 Identities=12% Similarity=0.088 Sum_probs=34.7
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHH
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRM 248 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~ 248 (331)
+.|++.+.+ +|.. .-..+.++++++.|+++|+|+-+-++..+..++..++|
T Consensus 93 ~~g~~k~RI--NPGN--ig~~~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky 143 (361)
T COG0821 93 ECGVDKVRI--NPGN--IGFKDRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKY 143 (361)
T ss_pred hcCcceEEE--CCcc--cCcHHHHHHHHHHHHHcCCCEEEecccCchhHHHHHHh
Confidence 567666554 4432 23566899999999999999988876555544444443
No 432
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=35.16 E-value=3.1e+02 Score=23.99 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEc
Q 020079 215 ELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 215 ~~l~~~~~~A~~~g~~v~~H~ 235 (331)
+.++++.+.|+++|+.+.++.
T Consensus 123 ~~l~~l~~~a~~~gi~l~lEn 143 (279)
T cd00019 123 EALNELIDKAETKGVVIALET 143 (279)
T ss_pred HHHHHHHHhccCCCCEEEEeC
Confidence 345556666666666666654
No 433
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=34.86 E-value=4e+02 Score=25.24 Aligned_cols=107 Identities=11% Similarity=0.068 Sum_probs=54.1
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCC---cHHHHHHHHHHH----hccceeeccccccccCCChhhHHHHHHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPING---SLTAGFEAYEKK----AKNSCMDYGFHMAITKWDEVVSDEMEVMVKE 194 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (331)
.+++.+...+.....+|+=-+-|-....+. ...+.+....+. .....-...+...++....+..+..+.+. +
T Consensus 152 l~~~~~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT~~~~em~~ra~~a~-~ 230 (407)
T TIGR03332 152 RDLGYLKEQLRQQALGGVDLVKDDEILFETGLAPFEKRITEGKEVLQEVYEQTGHKTLYAVNLTGRTFDLKDKAKRAA-E 230 (407)
T ss_pred CCHHHHHHHHHHHhccCcccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcceEeecCCCCHHHHHHHHHHHH-H
Confidence 456666666777889998877766543332 334433333222 21111111122233333344444444444 6
Q ss_pred hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
.|...+-+-+. ...-..++.+.+. .+.+++++.|-
T Consensus 231 ~G~~~~mv~~~-----~~G~~~~~~l~~~-~~~~lpihaHr 265 (407)
T TIGR03332 231 LGADVLLFNVF-----AYGLDVLQSLAED-DEIPVPIMAHP 265 (407)
T ss_pred hCCCEEEEecc-----ccChHHHHHHHhc-CCCCcEEEEec
Confidence 78776643221 1223445555443 35689999994
No 434
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=34.83 E-value=3.3e+02 Score=24.27 Aligned_cols=128 Identities=13% Similarity=-0.006 Sum_probs=67.4
Q ss_pred ChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHH-HHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccc
Q 020079 181 DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLI-EGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGH 259 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~-~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~ 259 (331)
+.+..+.+.+.+++.+...|- .+++........+.+. .+...|++...||.+|..-....+ ......+.|+..--.-
T Consensus 27 n~e~~~avi~aAe~~~~Pvii-~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e-~i~~Al~~G~tsVm~d 104 (281)
T PRK06806 27 NMEMVMGAIKAAEELNSPIIL-QIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAVHFDHGMTFE-KIKEALEIGFTSVMFD 104 (281)
T ss_pred CHHHHHHHHHHHHHhCCCEEE-EcCcchhccCChHHHHHHHHHHHHHCCCCEEEECCCCCCHH-HHHHHHHcCCCEEEEc
Confidence 445556666666555554442 1222222223444443 456678889999999973222232 3344556676543222
Q ss_pred cccCChHHHHHHHHHHHHHHHhcCCCE--EEEeCCC-----------HHHHHHHHHHH-HcCCCE
Q 020079 260 ALSRPPLLEGEATTRAIRLAEFVNTPL--YVVHVMS-----------MDAMEEIAKAR-KAGPNF 310 (331)
Q Consensus 260 ~~~~~~~~e~~~i~~~~~l~~~~g~~~--~i~H~~~-----------~~~~~~i~~~~-~~Gi~v 310 (331)
....+...-....++..+++..+|+.+ .+.|+.. ..+.+.++++. +.|+..
T Consensus 105 ~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~Dy 169 (281)
T PRK06806 105 GSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDA 169 (281)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCE
Confidence 222332222334567888899888764 4557651 12345555554 558763
No 435
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=34.55 E-value=3.4e+02 Score=24.29 Aligned_cols=17 Identities=6% Similarity=-0.113 Sum_probs=12.7
Q ss_pred EeCCCCeeecccccccc
Q 020079 96 LDATGKFVMPGGIDPHT 112 (331)
Q Consensus 96 id~~g~~v~PG~ID~H~ 112 (331)
++.++.+++||-.|..+
T Consensus 5 l~~~~~l~~p~~~D~~S 21 (285)
T TIGR02320 5 LHSKPLERLMEAHNGLS 21 (285)
T ss_pred hcCCCCEEEecCcCHHH
Confidence 44566788999988765
No 436
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=34.48 E-value=5.4e+02 Score=28.29 Aligned_cols=117 Identities=13% Similarity=0.044 Sum_probs=69.2
Q ss_pred HHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc----CCcEEEEcCCchhhHHHHHHHHHcCCCCcccccc
Q 020079 186 DEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL----GALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (331)
Q Consensus 186 ~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~----g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~ 261 (331)
+..+++. +.|++.|.+-.+. ......+++++++...... ++|+++=..+..-.+.+++.+. |...-..
T Consensus 372 ~~A~~qv-e~GA~iIDVn~~~--~~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~--G~~IINs--- 443 (1178)
T TIGR02082 372 DIAKQQV-ENGAQILDINVDY--GMLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQ--GKCIVNS--- 443 (1178)
T ss_pred HHHHHHH-HCCCCEEEECCCC--CCCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcC--CCCEEEe---
Confidence 3344444 5799988775432 2223467888888877653 7899888777666655544321 3211110
Q ss_pred cCChHHH--HHHHHHHHHHHHhcCCCEEEEeCCC-------H----HHHHHHHHHHH-cCCC---EEEe
Q 020079 262 SRPPLLE--GEATTRAIRLAEFVNTPLYVVHVMS-------M----DAMEEIAKARK-AGPN---FLNT 313 (331)
Q Consensus 262 ~~~~~~e--~~~i~~~~~l~~~~g~~~~i~H~~~-------~----~~~~~i~~~~~-~Gi~---v~~~ 313 (331)
...+ ....++.+.+++++|+.+.+.|... . -..+.++.+.+ .|++ |..|
T Consensus 444 ---Is~~~g~~~~~~~~~l~~~yga~vV~m~~de~G~p~t~e~r~~i~~~~~~~~~~~~Gi~~edIi~D 509 (1178)
T TIGR02082 444 ---ISLKDGEERFIETAKLIKEYGAAVVVMAFDEEGQARTADRKIEICKRAYNILTEKVGFPPEDIIFD 509 (1178)
T ss_pred ---CCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEe
Confidence 1111 0234467889999999999999742 1 12234566666 8984 5544
No 437
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=34.41 E-value=3.1e+02 Score=23.74 Aligned_cols=101 Identities=17% Similarity=0.127 Sum_probs=60.3
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEE-c-CCchhhHHHHHHHHHcCCCCcccccccCChHHHHHH
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH-A-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H-~-e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~ 271 (331)
+.|..++.+.. -...-..+.+.++++++.|. |+.+..| + ..........+.+.+.|+..--.++-. ..+ .+.
T Consensus 84 ~lG~~GVV~G~-lt~dg~iD~~~le~Li~aA~--gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTsGg~--~sa-~eg 157 (241)
T COG3142 84 ELGVQGVVLGA-LTADGNIDMPRLEKLIEAAG--GLGVTFHRAFDECPDPLEALEQLIELGVERILTSGGK--ASA-LEG 157 (241)
T ss_pred HcCCCcEEEee-ecCCCccCHHHHHHHHHHcc--CCceeeehhhhhcCCHHHHHHHHHHCCCcEEecCCCc--Cch-hhh
Confidence 67888775432 22234578899999999876 8888889 4 323335566677788887432222111 111 244
Q ss_pred HHHHHHHHHhcCCCEEEEeCC--CHHHHHHH
Q 020079 272 TTRAIRLAEFVNTPLYVVHVM--SMDAMEEI 300 (331)
Q Consensus 272 i~~~~~l~~~~g~~~~i~H~~--~~~~~~~i 300 (331)
+....++....+.++.+.... +.+.++.+
T Consensus 158 ~~~l~~li~~a~gri~Im~GaGV~~~N~~~l 188 (241)
T COG3142 158 LDLLKRLIEQAKGRIIIMAGAGVRAENIAEL 188 (241)
T ss_pred HHHHHHHHHHhcCCEEEEeCCCCCHHHHHHH
Confidence 566666777776777777764 34443433
No 438
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=34.30 E-value=4e+02 Score=24.99 Aligned_cols=20 Identities=15% Similarity=0.037 Sum_probs=15.7
Q ss_pred HHHHHHhCCceEEecCcCCC
Q 020079 130 GQAAALAGGTTMHIDFVIPI 149 (331)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~ 149 (331)
-++.+.+.|.-|+.|.....
T Consensus 83 K~~~A~~~GADtvMDLStGg 102 (432)
T COG0422 83 KAVWAIKWGADTVMDLSTGG 102 (432)
T ss_pred HHHHHHHhCcceeEecccCC
Confidence 35668899999999987654
No 439
>PRK08418 chlorohydrolase; Provisional
Probab=34.23 E-value=51 Score=31.09 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=28.6
Q ss_pred CCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccchh
Q 020079 283 NTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN 323 (331)
Q Consensus 283 g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~~ 323 (331)
+.+..++||...+. +.++++++.|..|+ .||.++..++
T Consensus 253 ~~~~~~~H~~~~~~-~di~~la~~g~~v~--~cP~sn~~lg 290 (408)
T PRK08418 253 GLRTLFTHCVYASE-EELEKIKSKNASIT--HCPFSNRLLS 290 (408)
T ss_pred CCCeEEEecccCCH-HHHHHHHHcCCcEE--ECHhHHHHhc
Confidence 35788999986655 67888888997776 7898776543
No 440
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=34.14 E-value=3.8e+02 Score=24.71 Aligned_cols=46 Identities=11% Similarity=0.191 Sum_probs=32.3
Q ss_pred HHHHHHHhCCCeEEEEEecCCCCc-----CCHHHHHHHHHHHHHcCCcEEEE
Q 020079 188 MEVMVKEKGINSFKFFMAYKGSFM-----INDELLIEGFKRCKSLGALAMVH 234 (331)
Q Consensus 188 ~~~~~~~~g~~~ik~~~~~~~~~~-----~~~~~l~~~~~~A~~~g~~v~~H 234 (331)
++++. +.|++.+|+.+-++.... ...+.+.++.+.|+++|+|+.+.
T Consensus 112 ve~a~-~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE 162 (340)
T PRK12858 112 VRRIK-EAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLE 162 (340)
T ss_pred HHHHH-HcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEE
Confidence 34455 789999998776553211 12345788999999999998875
No 441
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=33.98 E-value=3.7e+02 Score=24.56 Aligned_cols=37 Identities=19% Similarity=0.111 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCCEEEEeCCC------HHHHH-HHHHHHHcCC
Q 020079 272 TTRAIRLAEFVNTPLYVVHVMS------MDAME-EIAKARKAGP 308 (331)
Q Consensus 272 i~~~~~l~~~~g~~~~i~H~~~------~~~~~-~i~~~~~~Gi 308 (331)
+.+.++.+.+.|.++.+...-. .+.++ +.+.+.+.|+
T Consensus 239 ~~~ai~~L~~aGi~v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV 282 (331)
T TIGR00238 239 FAEAMKKLRTVNVTLLNQSVLLRGVNDRAQILAKLSIALFKVGI 282 (331)
T ss_pred HHHHHHHHHHcCCEEEeecceECCcCCCHHHHHHHHHHHhhcCe
Confidence 4455666777787765544321 22233 5555666664
No 442
>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry []. The function of this domain appears to be to bind galactose [], and it is normally located at the N terminus of these enzymes []. It is associated with IPR013750 from INTERPRO and IPR006204 from INTERPRO. While all enzymes in this entry posses galactokinase activity, some are annotated as N-acetylgalactosamine kinases as they also posses this enzyme activity.; PDB: 1PIE_A 1WUU_A 1S4E_D 2A2C_A 2A2D_A 2AJ4_A 2DEJ_A 2CZ9_A 2DEI_A 3V5R_A ....
Probab=33.93 E-value=24 Score=22.59 Aligned_cols=34 Identities=35% Similarity=0.462 Sum_probs=24.1
Q ss_pred EEEeCCEEEEeeCCCCCCCCceEEeCCCCeeeccccccccccc
Q 020079 73 VYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115 (331)
Q Consensus 73 v~i~~g~I~~ig~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~ 115 (331)
+...=||+.-+|+. +|.+|..|+|.-||..+.+.
T Consensus 15 ~~~APGRvnliGeH---------tDy~gG~Vl~~Ai~~~~~~a 48 (52)
T PF10509_consen 15 VASAPGRVNLIGEH---------TDYNGGFVLPAAIDLRTYVA 48 (52)
T ss_dssp EEEEEEEEEEE-TT----------GGGT-EEEEEEEEEEEEEE
T ss_pred EEECCceEEecCcc---------cccCCCeEEEEEeeccEEEE
Confidence 44456788877763 58899999999999888753
No 443
>PRK06740 histidinol-phosphatase; Validated
Probab=33.48 E-value=3.8e+02 Score=24.52 Aligned_cols=52 Identities=8% Similarity=-0.197 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCCCEEEEeCC-C-------HHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 271 ATTRAIRLAEFVNTPLYVVHVM-S-------MDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 271 ~i~~~~~l~~~~g~~~~i~H~~-~-------~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
.+++.++.+.+.|..+.++-.. . --..+.++.+++.|++++.+..-|.-.-.
T Consensus 240 ~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~~~il~~~~e~Gv~~tlgSDAH~p~~V 299 (331)
T PRK06740 240 YYKEIARALVETNTATEINAGLYYRYPVREMCPSPLFLQVLAKHEVPITLSSDAHYPNDL 299 (331)
T ss_pred HHHHHHHHHHHcCCEEEEECccccCCCCCCCCcCHHHHHHHHHCCCeEEEeeCCCCHHHH
Confidence 4566677777888776665421 0 01225678888888888887776665444
No 444
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=33.10 E-value=1e+02 Score=23.91 Aligned_cols=56 Identities=18% Similarity=0.097 Sum_probs=32.3
Q ss_pred ceEEeCCCCeeecccccccccccCCCC----CCCC-----hhhHHHHHHHHHhCCceEEecCcCCC
Q 020079 93 VKVLDATGKFVMPGGIDPHTHLAMEFM----GSET-----IDDFFSGQAAALAGGTTMHIDFVIPI 149 (331)
Q Consensus 93 ~~~id~~g~~v~PG~ID~H~H~~~~~~----~~~~-----~~~~~~~~~~~l~~GvTtv~d~~~~~ 149 (331)
+-.+|+. ..+.|-+||.|.|...--. |... -.+........-..|||.+.-..+..
T Consensus 7 ~~~fdld-ytiwP~~vdthl~~pfkP~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~a 71 (144)
T KOG4549|consen 7 AMQFDLD-YTIWPRLVDTHLDYPFKPFKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMA 71 (144)
T ss_pred eeEEecc-ceeeeEEEEecccccccccccCcccCcceeeeccchhHHHHHHHhcCcEEEEecCCCC
Confidence 4567764 5799999999999754210 1000 11222223344568999987554443
No 445
>PLN02334 ribulose-phosphate 3-epimerase
Probab=33.02 E-value=3.1e+02 Score=23.37 Aligned_cols=47 Identities=13% Similarity=0.024 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCCCeEEEEEec-CCCC--cCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 185 SDEMEVMVKEKGINSFKFFMAY-KGSF--MINDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~~-~~~~--~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
.+.++++. +.|++.+.+=... +..+ ...++.++++.+. .+.++.+|.
T Consensus 23 ~~~l~~~~-~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~---~~~~~~vhl 72 (229)
T PLN02334 23 AEEAKRVL-DAGADWLHVDVMDGHFVPNLTIGPPVVKALRKH---TDAPLDCHL 72 (229)
T ss_pred HHHHHHHH-HcCCCEEEEecccCCcCCccccCHHHHHHHHhc---CCCcEEEEe
Confidence 34555555 6778777542211 1111 1223444444333 355677884
No 446
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=32.75 E-value=3.6e+02 Score=24.08 Aligned_cols=120 Identities=15% Similarity=0.113 Sum_probs=64.0
Q ss_pred hhhHHHHHHHHHHhCCCeEEEEEe---cCCCCcCCHHHHHH---HHHHHH-HcCCcEEEEcCCchhhHHHHHHHHHcCCC
Q 020079 182 EVVSDEMEVMVKEKGINSFKFFMA---YKGSFMINDELLIE---GFKRCK-SLGALAMVHAENGDAVFEGQKRMIELGIT 254 (331)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~---~~~~~~~~~~~l~~---~~~~A~-~~g~~v~~H~e~~~~~~~~~~~~~~~G~~ 254 (331)
+...+...++. +.|++.|.+... +.......++++++ +++..+ +.+.++.+=...++..+.. .+.|..
T Consensus 38 ~~a~~~a~~~~-~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~~~~va~~A----L~~Gad 112 (282)
T PRK11613 38 IDAVKHANLMI-NAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVWISVDTSKPEVIRES----AKAGAH 112 (282)
T ss_pred HHHHHHHHHHH-HCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHH----HHcCCC
Confidence 44556666666 678888876422 11112223455444 445555 3478887776665554443 334543
Q ss_pred CcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCC----C---------------HHHHHHHHHHHHcCC---CEEE
Q 020079 255 GPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM----S---------------MDAMEEIAKARKAGP---NFLN 312 (331)
Q Consensus 255 ~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~----~---------------~~~~~~i~~~~~~Gi---~v~~ 312 (331)
--.... +.. -.+.++.++++|+++.+.|.. + ..-.+.++.+.+.|+ +|.+
T Consensus 113 iINDI~-g~~-------d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~Iil 184 (282)
T PRK11613 113 IINDIR-SLS-------EPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLL 184 (282)
T ss_pred EEEECC-CCC-------CHHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEE
Confidence 211110 000 012234467789999999962 1 011245677889999 6776
Q ss_pred ec
Q 020079 313 TT 314 (331)
Q Consensus 313 ~~ 314 (331)
|.
T Consensus 185 DP 186 (282)
T PRK11613 185 DP 186 (282)
T ss_pred eC
Confidence 63
No 447
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=32.39 E-value=3.5e+02 Score=23.79 Aligned_cols=178 Identities=18% Similarity=0.104 Sum_probs=89.8
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCC-cHHHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHhCCCeE
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSF 200 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i 200 (331)
.+.++.....+.+.+.||..+-- +.|... ...+..+..........+ .... . ...+.++... +.|++.+
T Consensus 19 ~s~~~k~~i~~~L~~~Gv~~IEv-G~P~~~~~~~~~~~~l~~~~~~~~v--~~~~---r---~~~~di~~a~-~~g~~~i 88 (262)
T cd07948 19 FDTEDKIEIAKALDAFGVDYIEL-TSPAASPQSRADCEAIAKLGLKAKI--LTHI---R---CHMDDARIAV-ETGVDGV 88 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE-ECCCCCHHHHHHHHHHHhCCCCCcE--EEEe---c---CCHHHHHHHH-HcCcCEE
Confidence 34555555567778899987742 223222 233333333322211111 1111 1 1234566666 6799988
Q ss_pred EEEEecCC-----CCcCCH----HHHHHHHHHHHHcCCcEEEEcCC-----chhhHHHHHHHHHcCCCCcc---cccccC
Q 020079 201 KFFMAYKG-----SFMIND----ELLIEGFKRCKSLGALAMVHAEN-----GDAVFEGQKRMIELGITGPE---GHALSR 263 (331)
Q Consensus 201 k~~~~~~~-----~~~~~~----~~l~~~~~~A~~~g~~v~~H~e~-----~~~~~~~~~~~~~~G~~~~~---~~~~~~ 263 (331)
.+++.... ....+. +.+.++++.|++.|+.+.+..++ .+.+.+..+.+.+.|...-. ..+...
T Consensus 89 ~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~ 168 (262)
T cd07948 89 DLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIADTVGIAT 168 (262)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCC
Confidence 87764210 011232 34566778999999999888643 23343444556666654311 111222
Q ss_pred ChHHHHHHHHHHHHHHHh-cCCCEE-EEeCCCHHHHHHHHHHHHcCCCEEEecC
Q 020079 264 PPLLEGEATTRAIRLAEF-VNTPLY-VVHVMSMDAMEEIAKARKAGPNFLNTTI 315 (331)
Q Consensus 264 ~~~~e~~~i~~~~~l~~~-~g~~~~-i~H~~~~~~~~~i~~~~~~Gi~v~~~~~ 315 (331)
| ..+.+.+...++ .+.++. .+|++..-+++-.-.+-+.|+.. ++++
T Consensus 169 P-----~~v~~~~~~~~~~~~~~i~~H~Hn~~Gla~an~~~a~~aG~~~-vd~s 216 (262)
T cd07948 169 P-----RQVYELVRTLRGVVSCDIEFHGHNDTGCAIANAYAALEAGATH-IDTT 216 (262)
T ss_pred H-----HHHHHHHHHHHHhcCCeEEEEECCCCChHHHHHHHHHHhCCCE-EEEe
Confidence 3 234444444333 344432 23555555666666667788874 4444
No 448
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=32.27 E-value=3.3e+02 Score=23.46 Aligned_cols=15 Identities=7% Similarity=-0.073 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhcCCC
Q 020079 271 ATTRAIRLAEFVNTP 285 (331)
Q Consensus 271 ~i~~~~~l~~~~g~~ 285 (331)
.+.+.++.+.+.|+.
T Consensus 147 ~l~~~~~~~~~~g~~ 161 (265)
T cd03174 147 YVLEVAKALEEAGAD 161 (265)
T ss_pred HHHHHHHHHHHcCCC
Confidence 344455555555543
No 449
>PRK05926 hypothetical protein; Provisional
Probab=32.03 E-value=4.3e+02 Score=24.66 Aligned_cols=59 Identities=15% Similarity=-0.090 Sum_probs=35.6
Q ss_pred hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhh-----------HHHHHHHHHcCCCC
Q 020079 195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAV-----------FEGQKRMIELGITG 255 (331)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~-----------~~~~~~~~~~G~~~ 255 (331)
.|+..+-+. ++.. +..+.+.+.++++..++.--.+++|+-+..++ ++..+.+.+.|+..
T Consensus 113 ~G~~ei~iv-~G~~-p~~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~ 182 (370)
T PRK05926 113 SPITETHIV-AGCF-PSCNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDS 182 (370)
T ss_pred cCCCEEEEE-eCcC-CCCCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCc
Confidence 577666544 3333 34577788888888877533466775443322 34456677888754
No 450
>COG3065 Slp Starvation-inducible outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=31.82 E-value=2.6e+02 Score=23.06 Aligned_cols=12 Identities=42% Similarity=0.952 Sum_probs=7.5
Q ss_pred CCCeee--cccccc
Q 020079 99 TGKFVM--PGGIDP 110 (331)
Q Consensus 99 ~g~~v~--PG~ID~ 110 (331)
+|+++. +||+|.
T Consensus 94 qGRfiAy~~GFlDP 107 (191)
T COG3065 94 QGRFIAYVNGFLDP 107 (191)
T ss_pred CceEEEEcccccCh
Confidence 477653 777764
No 451
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=31.41 E-value=4.2e+02 Score=24.37 Aligned_cols=131 Identities=14% Similarity=0.008 Sum_probs=63.9
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCC----cHHHHHHHHHHHhccceeeccccccc---c-CCChhhHHHHHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPING----SLTAGFEAYEKKAKNSCMDYGFHMAI---T-KWDEVVSDEMEVMVK 193 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~ 193 (331)
.+++++...++.+...|++.+.-.....+. ...+.++..++..+...+........ . .......+.++++.
T Consensus 79 l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~Lk- 157 (351)
T TIGR03700 79 MSLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELK- 157 (351)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHH-
Confidence 467888777788888999988754332222 22334444444332222211100000 0 00001123355555
Q ss_pred HhCCCeEEE-EE---ec-----CCCCcCCHHHHHHHHHHHHHcCCcEEEE-----cCCchhhHHHHHHHHHcCC
Q 020079 194 EKGINSFKF-FM---AY-----KGSFMINDELLIEGFKRCKSLGALAMVH-----AENGDAVFEGQKRMIELGI 253 (331)
Q Consensus 194 ~~g~~~ik~-~~---~~-----~~~~~~~~~~l~~~~~~A~~~g~~v~~H-----~e~~~~~~~~~~~~~~~G~ 253 (331)
+.|.+.+-. .. ++ ..+...+.+...+.++.|++.|+++..+ .|+.++..+....+.+.+.
T Consensus 158 eAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~GlgEt~edrv~~l~~Lr~l~~ 231 (351)
T TIGR03700 158 EAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGHIETPAHRVDHMLRLRELQD 231 (351)
T ss_pred HcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeCCCCHHHHHHHHHHHHHhhH
Confidence 667664421 00 00 0011235667778999999999987554 4555554444444444433
No 452
>PRK13753 dihydropteroate synthase; Provisional
Probab=31.18 E-value=3.8e+02 Score=23.90 Aligned_cols=97 Identities=7% Similarity=-0.099 Sum_probs=53.9
Q ss_pred hhhHHHHHHHHHHhCCCeEEEEEecCC---CCcCCHHHHH---HHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCC
Q 020079 182 EVVSDEMEVMVKEKGINSFKFFMAYKG---SFMINDELLI---EGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITG 255 (331)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~---~~~~~~~~l~---~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~ 255 (331)
+...+...++. +.|++.|.+...... .....+|+++ .+++..++.+.++.+=...++..+.. .+.|..-
T Consensus 25 d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~~ISIDT~~~~va~~a----l~aGadi 99 (279)
T PRK13753 25 AGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHRVSIDSFQPETQRYA----LKRGVGY 99 (279)
T ss_pred HHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCcEEEECCCHHHHHHH----HHcCCCE
Confidence 45556666666 688888876432211 1112245665 67777777777887766555544433 3455432
Q ss_pred cccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeC
Q 020079 256 PEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (331)
Q Consensus 256 ~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~ 291 (331)
-.... . ....+....+.++++++.+.|.
T Consensus 100 INDVs---g-----~~d~~~~~vva~~~~~vVlmH~ 127 (279)
T PRK13753 100 LNDIQ---G-----FPDPALYPDIAEADCRLVVMHS 127 (279)
T ss_pred EEeCC---C-----CCchHHHHHHHHcCCCEEEEec
Confidence 11100 0 0122334566678999999997
No 453
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=31.16 E-value=3.7e+02 Score=23.68 Aligned_cols=32 Identities=13% Similarity=-0.030 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHcCCcEEEEcCCchhhHHHH
Q 020079 214 DELLIEGFKRCKSLGALAMVHAENGDAVFEGQ 245 (331)
Q Consensus 214 ~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~ 245 (331)
++-|+.+.+..+++|+|+.....+...++...
T Consensus 59 eeGL~iL~~vk~~~glpvvTeV~~~~~~~~va 90 (258)
T TIGR01362 59 EEGLKILQKVKEEFGVPILTDVHESSQCEPVA 90 (258)
T ss_pred HHHHHHHHHHHHHhCCceEEEeCCHHHHHHHH
Confidence 57788888888888999888876666555443
No 454
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=31.08 E-value=3.5e+02 Score=23.37 Aligned_cols=40 Identities=15% Similarity=0.089 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEE
Q 020079 187 EMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH 234 (331)
Q Consensus 187 ~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H 234 (331)
.++.+. +.|.+++.++. + ... ..+++.+..+++|+.+..|
T Consensus 20 ~l~~~a-~~Gf~~VEl~~-~---~~~---~~~~~~~~l~~~gl~~~~~ 59 (258)
T PRK09997 20 RFEKAA-QCGFRGVEFMF-P---YDY---DIEELKQVLASNKLEHTLH 59 (258)
T ss_pred HHHHHH-HhCCCEEEEcC-C---CCC---CHHHHHHHHHHcCCcEEEE
Confidence 344444 78999987642 1 122 3555566677899999876
No 455
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=31.04 E-value=3.7e+02 Score=23.62 Aligned_cols=106 Identities=12% Similarity=0.039 Sum_probs=55.5
Q ss_pred ChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeecc--ccccccCCChhhHHHHHHHHHHhCCCeE
Q 020079 123 TIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYG--FHMAITKWDEVVSDEMEVMVKEKGINSF 200 (331)
Q Consensus 123 ~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~i 200 (331)
..+++....+.++..|+.+++-... ................+... +.............++++++ +.|++.+
T Consensus 37 ~~~d~~~~~~~a~~~~~~av~v~~~-----~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~-~~Gad~v 110 (267)
T PRK07226 37 GLVDIRDTVNKVAEGGADAVLMHKG-----LARHGHRGYGRDVGLIVHLSASTSLSPDPNDKVLVGTVEEAI-KLGADAV 110 (267)
T ss_pred CcCCHHHHHHHHHhcCCCEEEeCHh-----HHhhhccccCCCCcEEEEEcCCCCCCCCCCcceeeecHHHHH-HcCCCEE
Confidence 4566666788899999988873211 11111100011111111111 11100011122344566666 7899988
Q ss_pred EEEEecCCC-CcCCHHHHHHHHHHHHHcCCcEEEE
Q 020079 201 KFFMAYKGS-FMINDELLIEGFKRCKSLGALAMVH 234 (331)
Q Consensus 201 k~~~~~~~~-~~~~~~~l~~~~~~A~~~g~~v~~H 234 (331)
++....... ...-.+++.++.+.++++|+|+.++
T Consensus 111 ~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi 145 (267)
T PRK07226 111 SVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAM 145 (267)
T ss_pred EEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 876554321 1112456778889999999999887
No 456
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=30.68 E-value=1.8e+02 Score=27.10 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCeEEEEEecCCCC--cCCHHHHHHHHHHHHHcCCcEEE
Q 020079 185 SDEMEVMVKEKGINSFKFFMAYKGSF--MINDELLIEGFKRCKSLGALAMV 233 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~~~~~~--~~~~~~l~~~~~~A~~~g~~v~~ 233 (331)
.+.+++.. ..+...+-+..+||.+. .++.++|.++.+.|+++|+.|..
T Consensus 147 ~~~LE~~~-~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VIS 196 (388)
T COG1168 147 FDALEKAF-VDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVIS 196 (388)
T ss_pred HHHHHHHH-hcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEe
Confidence 45555555 33332233345776543 46899999999999999999864
No 457
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=30.59 E-value=3.6e+02 Score=23.44 Aligned_cols=115 Identities=10% Similarity=0.010 Sum_probs=60.1
Q ss_pred CCChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHH--hcc--ceeeccc----cccccCCChhhHHHHHHHH
Q 020079 121 SETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK--AKN--SCMDYGF----HMAITKWDEVVSDEMEVMV 192 (331)
Q Consensus 121 ~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~ 192 (331)
..+.++.....+.++..|++.+=....+..+.....+..+.+. ..+ ..+..-. ........+...+.+++..
T Consensus 13 ~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~~~~~~~~~~~~i~~~~~~sL 92 (283)
T PF00248_consen 13 RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGDGKPEPDYSPDSIRESLERSL 92 (283)
T ss_dssp TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESSSSTGGGSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3456777777888999999976433333333445555444444 122 1111111 0011112233455666666
Q ss_pred HHhCCCeEEEEEecCCCCcCC-HHHHHHHHHHHHHcCCcEEEEc
Q 020079 193 KEKGINSFKFFMAYKGSFMIN-DELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 193 ~~~g~~~ik~~~~~~~~~~~~-~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
++-|.+.+.+++--....... .+...+.++.+++.|+.-.+=.
T Consensus 93 ~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGv 136 (283)
T PF00248_consen 93 ERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGV 136 (283)
T ss_dssp HHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred ccccccchhccccccccccccccchhhhhhhhcccccccccccc
Confidence 567888887665322222333 5666677778888887654443
No 458
>PRK06687 chlorohydrolase; Validated
Probab=29.79 E-value=50 Score=31.17 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=26.8
Q ss_pred CCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccc
Q 020079 283 NTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSC 321 (331)
Q Consensus 283 g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~ 321 (331)
+.++.++|+...+. +.++++++.|+.|+ .||.++..
T Consensus 245 ~~~~~~~H~~~~~~-~~~~~la~~g~~v~--~~P~sn~~ 280 (419)
T PRK06687 245 DHPSVFAHGVELNE-REIERLASSQVAIA--HNPISNLK 280 (419)
T ss_pred CCCeEEEEEecCCH-HHHHHHHHcCCeEE--ECcHHhhh
Confidence 45677899876555 67889999998777 68876653
No 459
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=29.73 E-value=1e+02 Score=22.67 Aligned_cols=48 Identities=6% Similarity=-0.008 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcC
Q 020079 185 SDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE 236 (331)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e 236 (331)
..+++++++...++.+..-... .-......++.+.|+++|+++..|+.
T Consensus 7 ~~~~~~li~~~a~d~~~~~~~~----~GGit~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 7 LHDFRRLIEAGAVDIVQIDPTR----CGGITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp HHHHHHHHHTTSCSEEEEBHHH----HTSHHHHHHHHHHHHHTT-EEEEBSS
T ss_pred HHHHHHHHHcCCCCEEEeCchh----cCCHHHHHHHHHHHHHhCCCEEecCC
Confidence 4566777744445555331111 11456788999999999999999974
No 460
>PRK08204 hypothetical protein; Provisional
Probab=29.65 E-value=59 Score=30.96 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=27.4
Q ss_pred cCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCcccc
Q 020079 282 VNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDS 320 (331)
Q Consensus 282 ~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~ 320 (331)
.+.+..+.|+...+. +.++++++.|+.++ .||.++.
T Consensus 242 ~~~~~~i~H~~~~~~-~~~~~la~~g~~v~--~~P~~~~ 277 (449)
T PRK08204 242 LGPDLNLVHGNDLSD-DELKLLADSGGSFS--VTPEIEM 277 (449)
T ss_pred CCCCeEEEecCCCCH-HHHHHHHHcCCCEE--EChHHHh
Confidence 455688999986555 67899999998887 6786653
No 461
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=29.63 E-value=4.5e+02 Score=24.16 Aligned_cols=40 Identities=10% Similarity=0.061 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCC---CH-HHHHHHHHHHHcCCC
Q 020079 270 EATTRAIRLAEFVNTPLYVVHVM---SM-DAMEEIAKARKAGPN 309 (331)
Q Consensus 270 ~~i~~~~~l~~~~g~~~~i~H~~---~~-~~~~~i~~~~~~Gi~ 309 (331)
+.+.+.++.+.+.+.++.+.-.. +. +-.+.++.+++.|+.
T Consensus 144 ~~v~~~i~~l~~~~~~~~i~~~v~~~n~~~l~~i~~~~~~~g~~ 187 (370)
T PRK13758 144 SKVERAAELFKKYKVEFNILCVVTSNTARHVNKIYKYFKEKDFK 187 (370)
T ss_pred HHHHHHHHHHHHhCCCceEEEEeccccccCHHHHHHHHHHcCCC
Confidence 44555566666666554433221 22 223457777888876
No 462
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=29.51 E-value=1.8e+02 Score=24.56 Aligned_cols=70 Identities=20% Similarity=0.205 Sum_probs=38.8
Q ss_pred HHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHH
Q 020079 189 EVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLE 268 (331)
Q Consensus 189 ~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e 268 (331)
..+.++.|...+|+|.-. + .-..++++++.+.|.+.|..+ -..+ .++
T Consensus 141 iaml~dmG~~SiKffPm~-G--l~~leE~~avAkA~a~~g~~l--EPTG--GId-------------------------- 187 (218)
T PF07071_consen 141 IAMLKDMGGSSIKFFPMG-G--LKHLEELKAVAKACARNGFTL--EPTG--GID-------------------------- 187 (218)
T ss_dssp HHHHHHTT--EEEE---T-T--TTTHHHHHHHHHHHHHCT-EE--EEBS--S----------------------------
T ss_pred HHHHHHcCCCeeeEeecC-C--cccHHHHHHHHHHHHHcCcee--CCcC--CcC--------------------------
Confidence 344447899999987432 1 236899999999999999987 2111 110
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeC
Q 020079 269 GEATTRAIRLAEFVNTPLYVVHV 291 (331)
Q Consensus 269 ~~~i~~~~~l~~~~g~~~~i~H~ 291 (331)
.+.+.+.++.+.+.|++..+=|.
T Consensus 188 l~N~~~I~~i~l~aGv~~viPHi 210 (218)
T PF07071_consen 188 LDNFEEIVKICLDAGVEKVIPHI 210 (218)
T ss_dssp TTTHHHHHHHHHHTT-S-B--EE
T ss_pred HHHHHHHHHHHHHcCCCeeccch
Confidence 12344566777788887777775
No 463
>PRK09236 dihydroorotase; Reviewed
Probab=29.51 E-value=3.9e+02 Score=25.38 Aligned_cols=92 Identities=9% Similarity=-0.155 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCCcEEEE-cCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEeCC--
Q 020079 216 LLIEGFKRCKSLGALAMVH-AENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM-- 292 (331)
Q Consensus 216 ~l~~~~~~A~~~g~~v~~H-~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~-- 292 (331)
.+.++.+.|++.+.++++| .++..+++...+. ...|. .......|...- .-++++. ..+.. +.|++
T Consensus 217 av~~~~~la~~~~~~~hi~h~st~~~~~~i~~~-~~~g~---~vt~e~~~H~l~--l~~~~~~---~~~~~--~~~~Ppl 285 (444)
T PRK09236 217 SSSLAVSLAKKHGTRLHVLHISTAKELSLFENG-PLAEK---RITAEVCVHHLW--FDDSDYA---RLGNL--IKCNPAI 285 (444)
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHHH-HHCCC---CEEEEEchhhhh--cCHHHHh---ccCce--EEECCCC
Confidence 4577899999999999995 6776666555432 22231 111100110000 0011111 23443 45554
Q ss_pred -CHHHHHHHHHHHHcCCCE--EEecCCcc
Q 020079 293 -SMDAMEEIAKARKAGPNF--LNTTIPLC 318 (331)
Q Consensus 293 -~~~~~~~i~~~~~~Gi~v--~~~~~p~~ 318 (331)
..++.+.+.++.+.|+.. ++|.+||.
T Consensus 286 r~~~~~~~l~~~l~~G~i~~igtDh~p~~ 314 (444)
T PRK09236 286 KTASDREALRQALADDRIDVIATDHAPHT 314 (444)
T ss_pred CCHHHHHHHHHHHhCCCCcEEECCCCCCC
Confidence 356777888888889875 45667874
No 464
>PRK08323 phenylhydantoinase; Validated
Probab=29.38 E-value=5e+02 Score=24.64 Aligned_cols=26 Identities=12% Similarity=0.296 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHcCCCEE--EecCCcccc
Q 020079 295 DAMEEIAKARKAGPNFL--NTTIPLCDS 320 (331)
Q Consensus 295 ~~~~~i~~~~~~Gi~v~--~~~~p~~~~ 320 (331)
+..+.+.++.+.|+... .|.+||.+.
T Consensus 292 ~~~~~l~~~l~~G~i~~i~sDh~p~~~~ 319 (459)
T PRK08323 292 EHQDALWRGLQDGDLQVVATDHCPFCFE 319 (459)
T ss_pred HHHHHHHHHhhcCCeeEEECCCCCCChH
Confidence 33456677778887654 567788653
No 465
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=29.32 E-value=7.5e+02 Score=27.34 Aligned_cols=96 Identities=16% Similarity=0.126 Sum_probs=57.7
Q ss_pred HHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHH----cCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccc
Q 020079 186 DEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKS----LGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (331)
Q Consensus 186 ~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~----~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~ 261 (331)
+..+++. +.|++.|.+-++ .......+++.+++..... .++|+++=..+..-.+.+++.+. |...-.
T Consensus 388 ~~A~~qv-e~GA~iIDVn~g--~~~id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEaaLk~~~--G~~IIN---- 458 (1229)
T PRK09490 388 DVARQQV-ENGAQIIDINMD--EGMLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCIQ--GKGIVN---- 458 (1229)
T ss_pred HHHHHHH-HCCCCEEEECCC--CCCCCHHHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHHHHhhcC--CCCEEE----
Confidence 3344444 579998877543 2223346778888777764 47899888777666655544321 221111
Q ss_pred cCChHHH--HHHHHHHHHHHHhcCCCEEEEeCC
Q 020079 262 SRPPLLE--GEATTRAIRLAEFVNTPLYVVHVM 292 (331)
Q Consensus 262 ~~~~~~e--~~~i~~~~~l~~~~g~~~~i~H~~ 292 (331)
....+ .....+.+.+++++|+.+.+.|..
T Consensus 459 --SIs~~~~~~~~~~~~~l~~kyga~vV~m~~d 489 (1229)
T PRK09490 459 --SISLKEGEEKFIEHARLVRRYGAAVVVMAFD 489 (1229)
T ss_pred --eCCCCCCCccHHHHHHHHHHhCCCEEEEecC
Confidence 01111 022446778999999999999984
No 466
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=29.05 E-value=49 Score=31.49 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=25.8
Q ss_pred CCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCcccc
Q 020079 283 NTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDS 320 (331)
Q Consensus 283 g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~ 320 (331)
+.++.+.|+...+. +.++++++.|+.++ +||..+.
T Consensus 248 ~~~~~l~H~~~~~~-~~~~~~~~~g~~v~--~~P~~~~ 282 (445)
T PRK07228 248 GEDLILAHCVWLDE-EEREILAETGTHVT--HCPSSNL 282 (445)
T ss_pred CCCcEEEEEecCCH-HHHHHHHHcCCeEE--EChHHhh
Confidence 55788999975444 55778888998776 7887654
No 467
>PRK08508 biotin synthase; Provisional
Probab=29.04 E-value=4.1e+02 Score=23.52 Aligned_cols=125 Identities=13% Similarity=0.047 Sum_probs=63.6
Q ss_pred CChhhHHHHHHHHHhCCceEEec--CcCCCCC-cH---HHHHHHHHHHhccceeeccccccccCCChhhHHHHHHHHHHh
Q 020079 122 ETIDDFFSGQAAALAGGTTMHID--FVIPING-SL---TAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEK 195 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d--~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (331)
.++|++...++.+.+.|++.+.- .+...+. .. .+.++..++..+. +.. ........ .+.++++. +.
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~--l~i--~~s~G~~~---~e~l~~Lk-~a 111 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPG--LHL--IACNGTAS---VEQLKELK-KA 111 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCC--cEE--EecCCCCC---HHHHHHHH-Hc
Confidence 46788877778788889987752 2221111 11 2222233222211 111 11111112 33455555 67
Q ss_pred CCCeEEEEEecC------CCCcCCHHHHHHHHHHHHHcCCcEEE-----EcCCchhhHHHHHHHHHcCCC
Q 020079 196 GINSFKFFMAYK------GSFMINDELLIEGFKRCKSLGALAMV-----HAENGDAVFEGQKRMIELGIT 254 (331)
Q Consensus 196 g~~~ik~~~~~~------~~~~~~~~~l~~~~~~A~~~g~~v~~-----H~e~~~~~~~~~~~~~~~G~~ 254 (331)
|.+.+...+... -....+.+...+.++.|++.|+.+.. |.|+.++..+....+.+.+..
T Consensus 112 Gld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ed~~~~l~~lr~L~~~ 181 (279)
T PRK08508 112 GIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSLASLSPH 181 (279)
T ss_pred CCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCCCHHHHHHHHHHHHcCCCC
Confidence 777664322111 01122345566677889999987744 346666666666666666654
No 468
>PRK09356 imidazolonepropionase; Validated
Probab=28.65 E-value=4.8e+02 Score=24.22 Aligned_cols=30 Identities=23% Similarity=0.212 Sum_probs=18.9
Q ss_pred EEeCCCHHHHHHHHHHHHcCCCEEEecCCcccc
Q 020079 288 VVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDS 320 (331)
Q Consensus 288 i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~ 320 (331)
+.|+...+. +.++++++.|+.++ +||..+.
T Consensus 262 ~~H~~~~~~-~~~~~la~~g~~~~--~~P~~~~ 291 (406)
T PRK09356 262 ADHLEYLDE-AGIAAMAEAGTVAV--LLPGAFY 291 (406)
T ss_pred ehHhhcCCH-HHHHHHHHhCCEEE--ECccchh
Confidence 445543333 56888888897665 7787554
No 469
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=28.36 E-value=2.1e+02 Score=24.73 Aligned_cols=55 Identities=13% Similarity=0.050 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEE--EecCCccccchh
Q 020079 269 GEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFL--NTTIPLCDSCSN 323 (331)
Q Consensus 269 ~~~i~~~~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~--~~~~p~~~~~~~ 323 (331)
.++++..++.++..|....=....+...++.++++-++||+|. ++.+|...+.++
T Consensus 116 sda~knAv~vmk~~g~~~vK~EgGs~~~~~~~~~l~ergipV~gHvGLTPQ~v~~lG 172 (306)
T KOG2949|consen 116 SDAVKNAVRVMKEGGMDAVKLEGGSNSRITAAKRLVERGIPVMGHVGLTPQAVSVLG 172 (306)
T ss_pred HHHHHHHHHHHHhcCCceEEEccCcHHHHHHHHHHHHcCCceeeeccCChhhhhhcc
Confidence 3677778888888777655555556677889999999999986 466676555443
No 470
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=28.28 E-value=4.5e+02 Score=23.76 Aligned_cols=115 Identities=13% Similarity=0.112 Sum_probs=58.3
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcC------CcEEEEc--CCc------hhhHHHHHHHHHcCCCCcccc
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG------ALAMVHA--ENG------DAVFEGQKRMIELGITGPEGH 259 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g------~~v~~H~--e~~------~~~~~~~~~~~~~G~~~~~~~ 259 (331)
+.|++.+-+ . ...+...+++++..+++.. +|++.|. ++. ..++.....+...|...- +.
T Consensus 154 ~gG~D~iLi--E----T~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a~~~~l~~~~~~~v-Gl 226 (311)
T COG0646 154 DGGADLILI--E----TIFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTIEAFLNSLEHLGPDAV-GL 226 (311)
T ss_pred hCCCcEEEE--e----hhccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCCcHHHHHHHhhccCCcEE-ee
Confidence 468887632 1 2246678888877777665 8999884 321 223333333444443221 22
Q ss_pred cccCChHHHHHHHHHHHHHHHhcCCCEEEEeCC---------------CHHHH-HHHHHHHHcC-CCEE---EecCCccc
Q 020079 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM---------------SMDAM-EEIAKARKAG-PNFL---NTTIPLCD 319 (331)
Q Consensus 260 ~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~---------------~~~~~-~~i~~~~~~G-i~v~---~~~~p~~~ 319 (331)
.++..+ ..+...++........+..+|-. +++.+ +.++.+.+.| ++|. |+|+|-|.
T Consensus 227 NCa~Gp----~~m~~~l~~ls~~~~~~vs~~PNAGLP~~~g~~~~Y~~~p~~~a~~~~~f~~~g~vnIvGGCCGTTPeHI 302 (311)
T COG0646 227 NCALGP----DEMRPHLRELSRIADAFVSVYPNAGLPNAFGERAVYDLTPEYMAEALAEFAEEGGVNIVGGCCGTTPEHI 302 (311)
T ss_pred ccccCH----HHHHHHHHHHHhccCceEEEeCCCCCCcccCCccccCCCHHHHHHHHHHHHHhCCceeeccccCCCHHHH
Confidence 222221 23334444444443333344421 12222 3566566666 8985 67778764
No 471
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=28.22 E-value=4e+02 Score=23.19 Aligned_cols=107 Identities=11% Similarity=0.055 Sum_probs=51.6
Q ss_pred hhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhc-cceeecccccccc------CCChhhHHHHHHHHHHhC
Q 020079 124 IDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK-NSCMDYGFHMAIT------KWDEVVSDEMEVMVKEKG 196 (331)
Q Consensus 124 ~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g 196 (331)
.+......+.++..|++.+=....+..+.....+....+... +..+-+..-.+.. ...+...+.+++..++-|
T Consensus 28 ~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~ 107 (285)
T cd06660 28 EEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLG 107 (285)
T ss_pred HHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 456667788899999999743333333223333333322221 2111111111111 122334555666565567
Q ss_pred CCeEEEEEe-cCCCCcCCHHHHHHHHHHHHHcCCc
Q 020079 197 INSFKFFMA-YKGSFMINDELLIEGFKRCKSLGAL 230 (331)
Q Consensus 197 ~~~ik~~~~-~~~~~~~~~~~l~~~~~~A~~~g~~ 230 (331)
.+.+.+++- ...............++.+++.|+.
T Consensus 108 ~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~i 142 (285)
T cd06660 108 TDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKI 142 (285)
T ss_pred CCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 777765532 1111111245666677777777764
No 472
>PRK08123 histidinol-phosphatase; Reviewed
Probab=28.16 E-value=4.1e+02 Score=23.29 Aligned_cols=53 Identities=15% Similarity=-0.018 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCC--------HHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 270 EATTRAIRLAEFVNTPLYVVHVMS--------MDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 270 ~~i~~~~~l~~~~g~~~~i~H~~~--------~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
..+++.++.+.+.|..+.+.-... --..+.++++++.|++++++..-|.-.-+
T Consensus 197 ~~~~~il~~~~~~g~~lEINtsgl~~~~~~~~yP~~~il~~~~e~g~~itlgSDAH~~~~v 257 (270)
T PRK08123 197 ELIEDILALIKKRGYELDFNTAGLRKPYCGEPYPPGEIITLAKKLGIPLVYGSDAHSAADV 257 (270)
T ss_pred HHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCcHHHHHHHHHcCCCEEEeCCCCCHHHH
Confidence 456888899999998877764211 11346889999999999998888776544
No 473
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=28.11 E-value=4.4e+02 Score=23.58 Aligned_cols=109 Identities=9% Similarity=0.016 Sum_probs=56.2
Q ss_pred ChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHH-HHHHHHHcCCcEEEEcCCchhhHHHHHHHHHcCCCCcccc
Q 020079 181 DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIE-GFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGH 259 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~-~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~ 259 (331)
+.+..+.+.+.+++.+...|- ...+........+.+.. +...|++...||.+|..-....+.. ....+.|+.+-=.=
T Consensus 27 n~e~~~avi~AAee~~sPvIl-q~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLDH~~~~e~i-~~ai~~GftSVM~D 104 (284)
T PRK12857 27 NMEIVQAIVAAAEAEKSPVII-QASQGAIKYAGIEYISAMVRTAAEKASVPVALHLDHGTDFEQV-MKCIRNGFTSVMID 104 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEE-EechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH-HHHHHcCCCeEEEe
Confidence 344555566666455554442 22222222234455544 6668888999999997333233333 34456677542111
Q ss_pred cccCChHHHHHHHHHHHHHHHhcCCCE--EEEeC
Q 020079 260 ALSRPPLLEGEATTRAIRLAEFVNTPL--YVVHV 291 (331)
Q Consensus 260 ~~~~~~~~e~~~i~~~~~l~~~~g~~~--~i~H~ 291 (331)
+...|-..-....++.++++...|+.+ .+.|+
T Consensus 105 gS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~v 138 (284)
T PRK12857 105 GSKLPLEENIALTKKVVEIAHAVGVSVEAELGKI 138 (284)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeec
Confidence 112232222334567888888887653 34444
No 474
>COG1679 Predicted aconitase [General function prediction only]
Probab=28.11 E-value=5e+02 Score=24.27 Aligned_cols=108 Identities=21% Similarity=0.155 Sum_probs=60.0
Q ss_pred CcCCHHHHHHHHHHHHHcCCcEEEEcCC--chhh---------------HHHHHHHHH--cCCCCcccccccCChHHHHH
Q 020079 210 FMINDELLIEGFKRCKSLGALAMVHAEN--GDAV---------------FEGQKRMIE--LGITGPEGHALSRPPLLEGE 270 (331)
Q Consensus 210 ~~~~~~~l~~~~~~A~~~g~~v~~H~e~--~~~~---------------~~~~~~~~~--~G~~~~~~~~~~~~~~~e~~ 270 (331)
...+.+.++++-......|.....|.++ ++.. ++..+.+.+ .+...+.....++| +....
T Consensus 225 ~~p~~d~lKalgAA~atsgavam~HvegvTPE~~~~~~~d~~e~i~i~~~d~~da~~~l~~~~~epdli~iGcP-HaS~~ 303 (403)
T COG1679 225 LFPSEDELKALGAAMATSGAVAMYHVEGVTPEARALAFGDKAEKIEIEREDIDDAWERLNTADGEPDLIALGCP-HASLE 303 (403)
T ss_pred CCCCHHHHHHHHHHHhhcCceeEEEecCCCcccccccccccCceeeeeHHHHHHHHHHhhcCCCCCCEEEeCCC-CCCHH
Confidence 3458899999999999999999999754 2110 000111222 22223333333333 22334
Q ss_pred HHHHHHHHHHhcC----CCEEEEeCCC--H--HHHHHHHHHHHcCCCEEEecCCcc
Q 020079 271 ATTRAIRLAEFVN----TPLYVVHVMS--M--DAMEEIAKARKAGPNFLNTTIPLC 318 (331)
Q Consensus 271 ~i~~~~~l~~~~g----~~~~i~H~~~--~--~~~~~i~~~~~~Gi~v~~~~~p~~ 318 (331)
.+.+.+.+++..+ .++.++-... . ..+-.++.+++.|.++..|+|+.-
T Consensus 304 E~~~la~~l~~r~~~~~~~~~V~~sr~v~~~a~~~G~~~~le~~g~~vv~DtC~vV 359 (403)
T COG1679 304 ELRRLAELLKGRKRPAGVPLYVTTSRAVYAQARKEGYLAKLEELGVKVVSDTCMVV 359 (403)
T ss_pred HHHHHHHHHhccCCCCCCCEEEEcCHHHHHHHhhhhhHHHHHHcCCEEecCceeEE
Confidence 5666666666554 4444432111 1 122237778899999999998543
No 475
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=27.91 E-value=76 Score=18.89 Aligned_cols=16 Identities=25% Similarity=0.573 Sum_probs=12.9
Q ss_pred eeEEEeCCEEEEeeCC
Q 020079 71 ADVYVEDGIVVAVQPN 86 (331)
Q Consensus 71 ~~v~i~~g~I~~ig~~ 86 (331)
-.|.|.||+|+.|...
T Consensus 18 V~iiiqdG~vvQIe~~ 33 (38)
T PF10055_consen 18 VTIIIQDGRVVQIEKT 33 (38)
T ss_pred EEEEEECCEEEEEEhh
Confidence 3677899999998764
No 476
>PRK05660 HemN family oxidoreductase; Provisional
Probab=27.72 E-value=3.9e+02 Score=24.90 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhcCCCE---EEEeC-C--C-HHHHHHHHHHHHcCCC
Q 020079 270 EATTRAIRLAEFVNTPL---YVVHV-M--S-MDAMEEIAKARKAGPN 309 (331)
Q Consensus 270 ~~i~~~~~l~~~~g~~~---~i~H~-~--~-~~~~~~i~~~~~~Gi~ 309 (331)
..+.+.++.+.+.|... .+.-. + + .+-.+.++.+.+.|+.
T Consensus 143 ~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~ 189 (378)
T PRK05660 143 DEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQAIALNPP 189 (378)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhcCCC
Confidence 34555677778888642 22211 1 2 2233456777776754
No 477
>PRK12393 amidohydrolase; Provisional
Probab=27.30 E-value=62 Score=31.05 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=27.2
Q ss_pred CCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 283 NTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 283 g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
+.++.+.||...+. +.++++++.|+.|+ .||..+..+
T Consensus 267 ~~~~~~~H~~~l~~-~d~~~la~~g~~v~--~~P~sn~~l 303 (457)
T PRK12393 267 GPDVWFAHLVKLDA-EEIALLAQTGTGIA--HCPQSNGRL 303 (457)
T ss_pred CCCeEEEEEecCCH-HHHHHHHHcCCeEE--ECchhhhhh
Confidence 45677889876554 67889999998776 788766444
No 478
>COG1850 RbcL Ribulose 1,5-bisphosphate carboxylase, large subunit [Carbohydrate transport and metabolism]
Probab=27.20 E-value=5.4e+02 Score=24.28 Aligned_cols=107 Identities=13% Similarity=0.047 Sum_probs=56.2
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCC---CcHHHHHHHHHHHhcc----ceeeccccccccCCChhhHHHHHHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPIN---GSLTAGFEAYEKKAKN----SCMDYGFHMAITKWDEVVSDEMEVMVKE 194 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (331)
.+++.......+++++|+--+-|-..... ....+.+....+...+ ..-.-.+...++...++..+..+... +
T Consensus 168 l~~e~~a~~~yE~~~GGvD~iKDDEnl~s~~f~~~e~R~~~~m~~i~~aeaeTGekk~y~~NITa~~~EM~rrae~a~-e 246 (429)
T COG1850 168 LSPEEYAELAYELLSGGVDFIKDDENLTSPPFNRFEERVAKIMEAIDKAEAETGEKKMYAVNITAPCEEMMRRAELAA-E 246 (429)
T ss_pred CCHHHHHHHHHHHHhcCcceecchhhccCcccccHHHHHHHHHHHHHHHHHhhCceEEEEeeccCCHHHHHHHHHHHH-H
Confidence 45677777778889999988876543222 2344443333332211 11111112233333555555555444 6
Q ss_pred hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
.|.+.+-+-+. ...-..++.+.+. ++.++++|.|-
T Consensus 247 lG~~~~midi~-----~~G~~a~q~lre~-~d~gl~ihaHr 281 (429)
T COG1850 247 LGANYVMIDIV-----VTGFTALQYLRED-EDIGLAIHAHR 281 (429)
T ss_pred cCCCEEEEEEE-----ecccHHHHHHHhc-ccCCceEEech
Confidence 67665422111 1123456666666 77899999983
No 479
>PRK03906 mannonate dehydratase; Provisional
Probab=26.93 E-value=1.8e+02 Score=27.33 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCCc
Q 020079 215 ELLIEGFKRCKSLGALAMVHAENG 238 (331)
Q Consensus 215 ~~l~~~~~~A~~~g~~v~~H~e~~ 238 (331)
+.|++++..|+++|+.+.+|..++
T Consensus 214 ~fL~~v~p~Aee~GV~LaihPdDP 237 (385)
T PRK03906 214 YFLKAIIPVAEEVGVKMAIHPDDP 237 (385)
T ss_pred HHHHHHHHHHHHcCCEEEEeeCCc
Confidence 446788999999999999998654
No 480
>PRK12569 hypothetical protein; Provisional
Probab=26.86 E-value=2.8e+02 Score=24.26 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEc
Q 020079 213 NDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 213 ~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
+++.+++.+++|+++|+.|-.|.
T Consensus 45 Dp~~M~~tv~lA~~~~V~IGAHP 67 (245)
T PRK12569 45 DPNIMRRTVELAKAHGVGIGAHP 67 (245)
T ss_pred CHHHHHHHHHHHHHcCCEeccCC
Confidence 55666667777777777776665
No 481
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=26.74 E-value=5.2e+02 Score=23.96 Aligned_cols=125 Identities=14% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCceEEe-cCcCCCCC----cHHHHHHHHHHHhccceeeccccccccCCC----------hhhHHHHHHHH
Q 020079 128 FSGQAAALAGGTTMHI-DFVIPING----SLTAGFEAYEKKAKNSCMDYGFHMAITKWD----------EVVSDEMEVMV 192 (331)
Q Consensus 128 ~~~~~~~l~~GvTtv~-d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~ 192 (331)
......++..|+|+|. |....+.. .+.+.++.....+...-...+.-.+..+.. -...++..+++
T Consensus 118 ~~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~GvsVEaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv 197 (350)
T PRK09197 118 EKHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAGMTLEIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYAY 197 (350)
T ss_pred HHHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCCcCCccccccccccccCCHHHHHHHH
Q ss_pred HHhCC----CeEEEEEe-----cC-CCCcCCHHHHHHHHHHHHHc------CCcEEEEcCCchhhHHHHHHHHHcCC
Q 020079 193 KEKGI----NSFKFFMA-----YK-GSFMINDELLIEGFKRCKSL------GALAMVHAENGDAVFEGQKRMIELGI 253 (331)
Q Consensus 193 ~~~g~----~~ik~~~~-----~~-~~~~~~~~~l~~~~~~A~~~------g~~v~~H~e~~~~~~~~~~~~~~~G~ 253 (331)
++.|+ +.+-+.++ +. +.+..+.+.|+++-+...+. ++|+..|-.+.-..++ .++..+.|+
T Consensus 198 ~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGipde~-i~~ai~~GI 273 (350)
T PRK09197 198 EALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSKKFGLPAKPFDFVFHGGSGSTLEE-IREAVSYGV 273 (350)
T ss_pred HHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHHhhCCCCCCCCEEEeCCCCCCHHH-HHHHHHCCC
No 482
>PRK07575 dihydroorotase; Provisional
Probab=26.68 E-value=3.8e+02 Score=25.48 Aligned_cols=94 Identities=16% Similarity=0.012 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCCcEEE-EcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEEe-CC
Q 020079 215 ELLIEGFKRCKSLGALAMV-HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH-VM 292 (331)
Q Consensus 215 ~~l~~~~~~A~~~g~~v~~-H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H-~~ 292 (331)
+.++++++.|++.|.++++ |+.+.+.++...+. +.+....+.. |...- .-++++ ...+....+++ .-
T Consensus 212 ~av~~~~~la~~~g~~lhi~HiSt~~~v~~i~~~--k~~~vt~ev~----phhL~--l~~~~~---~~~~~~~k~~PPLR 280 (438)
T PRK07575 212 LATRLALKLSKKYQRRLHILHLSTAIEAELLRQD--KPSWVTAEVT----PQHLL--LNTDAY---ERIGTLAQMNPPLR 280 (438)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHh--cCCCEEEEEc----hhhhe--eCHHHH---hCCCceEEEeCCCC
Confidence 6678899999999999999 98776666554322 1111111111 11100 001111 12344333433 22
Q ss_pred CHHHHHHHHHHHHcCCC--EEEecCCccc
Q 020079 293 SMDAMEEIAKARKAGPN--FLNTTIPLCD 319 (331)
Q Consensus 293 ~~~~~~~i~~~~~~Gi~--v~~~~~p~~~ 319 (331)
+.++.+.+-++.+.|+. |+.|.+||.+
T Consensus 281 ~~~d~~~L~~~l~~G~id~i~sDh~p~~~ 309 (438)
T PRK07575 281 SPEDNEALWQALRDGVIDFIATDHAPHTL 309 (438)
T ss_pred CHHHHHHHHHHHhCCCCCEEecCCCCCCH
Confidence 45666777777778865 4578889975
No 483
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=26.66 E-value=4.3e+02 Score=23.00 Aligned_cols=107 Identities=9% Similarity=-0.020 Sum_probs=55.4
Q ss_pred ChhhHHHHHHHHHhCCceEEecCcCCCCCcHHHHHHHHHHHhccceeec--cccccccCCChhhHHHHHHHHHHhCCCeE
Q 020079 123 TIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDY--GFHMAITKWDEVVSDEMEVMVKEKGINSF 200 (331)
Q Consensus 123 ~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~i 200 (331)
..+++....+.++.+|+..++-.... ...............+.. .+..+...........+++++ +.|++.+
T Consensus 34 ~~~~~~~~~~~a~~~~~~~v~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al-~~Ga~~v 107 (258)
T TIGR01949 34 GLVDIRKTVNEVAEGGADAVLLHKGI-----VRRGHRGYGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAI-RMGADAV 107 (258)
T ss_pred CcCCHHHHHHHHHhcCCCEEEeCcch-----hhhcccccCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHH-HCCCCEE
Confidence 45666677888999999988743211 111111111111111111 221111111112334566777 7899988
Q ss_pred EEEEecCCCC-cCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 201 KFFMAYKGSF-MINDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 201 k~~~~~~~~~-~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
.+........ .-..+.+.++.+.++++|+++.+..
T Consensus 108 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~ 143 (258)
T TIGR01949 108 SIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMM 143 (258)
T ss_pred EEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 7765432110 0112456778888999999988853
No 484
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=26.61 E-value=2.7e+02 Score=25.63 Aligned_cols=110 Identities=14% Similarity=0.037 Sum_probs=53.7
Q ss_pred HhCCCeEEEEEecCCCCcCCHHHHHHHHHHHH-HcCCcEEEEcCCchhhHHHHHHHHHcCCCCccc--------ccccCC
Q 020079 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCK-SLGALAMVHAENGDAVFEGQKRMIELGITGPEG--------HALSRP 264 (331)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~-~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~--------~~~~~~ 264 (331)
+.|+..+-...++.+ .....+.+.++++..+ +.|+.+.+-... ...+..+.+.+.|+..-.+ +...+|
T Consensus 98 ~~Ga~r~c~~aagr~-~~~~~~~i~~~v~~Vk~~~~le~c~slG~--l~~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~t 174 (335)
T COG0502 98 AAGATRFCMGAAGRG-PGRDMEEVVEAIKAVKEELGLEVCASLGM--LTEEQAEKLADAGVDRYNHNLETSPEFYENIIT 174 (335)
T ss_pred HcCCceEEEEEeccC-CCccHHHHHHHHHHHHHhcCcHHhhccCC--CCHHHHHHHHHcChhheecccccCHHHHcccCC
Confidence 567666655555655 3355666666666666 778776655432 1122234456666643222 221122
Q ss_pred hHHHHHHHHHHHHHHHhcCCCEEEE---eC--CCHHHHHHHHHHHHcC
Q 020079 265 PLLEGEATTRAIRLAEFVNTPLYVV---HV--MSMDAMEEIAKARKAG 307 (331)
Q Consensus 265 ~~~e~~~i~~~~~l~~~~g~~~~i~---H~--~~~~~~~~i~~~~~~G 307 (331)
. -..+.--+.+..++++|..+-.. -+ +..+.++.+..+++..
T Consensus 175 t-~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~ 221 (335)
T COG0502 175 T-RTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLP 221 (335)
T ss_pred C-CCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCC
Confidence 1 11223344556666666542111 11 1134456666666665
No 485
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=26.58 E-value=6e+02 Score=24.66 Aligned_cols=124 Identities=15% Similarity=0.075 Sum_probs=61.1
Q ss_pred ChhhHHHHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcC-CcEEEEcCCc-hh---hHHHHHHHHHcCCCC
Q 020079 181 DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG-ALAMVHAENG-DA---VFEGQKRMIELGITG 255 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g-~~v~~H~e~~-~~---~~~~~~~~~~~G~~~ 255 (331)
.+...++++.+.++.|+..+.+ .+. ....+.+.+.++++...+.+ +.+...++.. .. ..+..+.+.+.|+..
T Consensus 224 ~e~Vv~Ei~~l~~~~gv~~~~~-~Dd--~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~ 300 (497)
T TIGR02026 224 PKKFVDEIEWLVRTHGVGFFIL-ADE--EPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGLVH 300 (497)
T ss_pred HHHHHHHHHHHHHHcCCCEEEE-Eec--ccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCCcE
Confidence 3456677877775567765532 222 23456677788888777765 5544333221 11 123445566667632
Q ss_pred c----cccc------ccCChHHHHHHHHHHHHHHHhcCCCEEEEeCCC------HHHHHHHHHHHHcCCC
Q 020079 256 P----EGHA------LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS------MDAMEEIAKARKAGPN 309 (331)
Q Consensus 256 ~----~~~~------~~~~~~~e~~~i~~~~~l~~~~g~~~~i~H~~~------~~~~~~i~~~~~~Gi~ 309 (331)
- +... ...... .+.+.+.++++.++|..+.+.=+.- .+-.+.++.+.+.++.
T Consensus 301 v~iGiES~~~~~L~~~~K~~t--~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~ 368 (497)
T TIGR02026 301 ISLGTEAAAQATLDHFRKGTT--TSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPD 368 (497)
T ss_pred EEEccccCCHHHHHHhcCCCC--HHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 1 1100 001111 2234566677777777653222211 1223345556666654
No 486
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=26.57 E-value=1.9e+02 Score=25.84 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCC--CeEE-EEEec-CC---CCcCCHHHHHHHHHHHHHcCCcEEEE
Q 020079 185 SDEMEVMVKEKGI--NSFK-FFMAY-KG---SFMINDELLIEGFKRCKSLGALAMVH 234 (331)
Q Consensus 185 ~~~~~~~~~~~g~--~~ik-~~~~~-~~---~~~~~~~~l~~~~~~A~~~g~~v~~H 234 (331)
++++++.+...+. ...+ +++.. .. -..++.++++++.+.|+++|+++++=
T Consensus 108 ~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmD 164 (290)
T PF01212_consen 108 PEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMD 164 (290)
T ss_dssp HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEE
T ss_pred HHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEe
Confidence 5666666644443 2222 23332 11 23468999999999999999998765
No 487
>PLN02727 NAD kinase
Probab=26.57 E-value=8.1e+02 Score=26.13 Aligned_cols=50 Identities=12% Similarity=0.040 Sum_probs=32.0
Q ss_pred HHHHHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHH-HHcCCcEEEEcCCc
Q 020079 187 EMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRC-KSLGALAMVHAENG 238 (331)
Q Consensus 187 ~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A-~~~g~~v~~H~e~~ 238 (331)
++++.+++.|...+.+-+. .....+.+.+.++.+.. .....|+.+||.+.
T Consensus 301 ee~eAae~~GL~yVhIPVs--~~~apt~EqVe~fa~~l~~slpkPVLvHCKSG 351 (986)
T PLN02727 301 AVDDAISSGKIEVVKIPVE--VRTAPSAEQVEKFASLVSDSSKKPIYLHSKEG 351 (986)
T ss_pred HHHHHHHHcCCeEEEeecC--CCCCCCHHHHHHHHHHHHhhcCCCEEEECCCC
Confidence 4455554567766543221 12335778888888877 55789999999543
No 488
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=26.45 E-value=5.7e+02 Score=24.38 Aligned_cols=105 Identities=13% Similarity=0.023 Sum_probs=51.2
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCC---cHHHHHHHHHHH----hccceeeccccccccCCChhhHHHHHHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPING---SLTAGFEAYEKK----AKNSCMDYGFHMAITKWDEVVSDEMEVMVKE 194 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (331)
.+++.+.......+.+|+=-+-|-....+. ...+.+....+. .....-...+...++...++..+..+... +
T Consensus 173 Lsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~ya~NiT~~~~em~~ra~~a~-~ 251 (424)
T cd08208 173 LPPGEFAELGYQSWLGGLDIAKDDEMLADVDWCPLEERAALLGKARRRAEAETGVPKIYLANITDEVDRLMELHDVAV-R 251 (424)
T ss_pred CCHHHHHHHHHHHHcCCcccccccccccCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEccCCHHHHHHHHHHHH-H
Confidence 567777777888899998777665433222 334433332222 21111111112223333344444444333 6
Q ss_pred hCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEc
Q 020079 195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA 235 (331)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (331)
.|.+.+-+-.. ...-..++.+. +..+++++.|-
T Consensus 252 ~G~~~vmv~~~-----~~G~~al~~L~---~~~~l~ihaHr 284 (424)
T cd08208 252 NGANALLINAM-----PVGLSAVRMLR---KHAQVPLIAHF 284 (424)
T ss_pred hCCCEEEEeee-----cccHHHHHHHH---hcCCCeEEecc
Confidence 77765533221 11223344433 35688999994
No 489
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=26.38 E-value=6.4e+02 Score=24.94 Aligned_cols=20 Identities=15% Similarity=-0.008 Sum_probs=15.9
Q ss_pred HHHHHHhCCceEEecCcCCC
Q 020079 130 GQAAALAGGTTMHIDFVIPI 149 (331)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~ 149 (331)
-+..+++.|--|+.|.....
T Consensus 237 K~~~A~~~GADtvMDLSTGg 256 (607)
T PRK09284 237 KMVWATRWGADTVMDLSTGK 256 (607)
T ss_pred HHHHHHHcCCCEEEecCCCC
Confidence 35668999999999987654
No 490
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=26.00 E-value=1.7e+02 Score=26.80 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCCeE--EEEEecCCCCcCCHHHHHHHHHHHHHcCCcE--EEEc
Q 020079 187 EMEVMVKEKGINSF--KFFMAYKGSFMINDELLIEGFKRCKSLGALA--MVHA 235 (331)
Q Consensus 187 ~~~~~~~~~g~~~i--k~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v--~~H~ 235 (331)
++-++.+.+|++.+ +++.+|...-.++.+...++.+.|+++|+.+ ..|-
T Consensus 28 d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHY 80 (332)
T PF07745_consen 28 DLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHY 80 (332)
T ss_dssp -HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-S
T ss_pred CHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecc
Confidence 34455557898866 4555554434578889999999999999875 5563
No 491
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=25.84 E-value=63 Score=25.21 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=13.2
Q ss_pred eeeEEEeCCEEEEee
Q 020079 70 IADVYVEDGIVVAVQ 84 (331)
Q Consensus 70 ~~~v~i~~g~I~~ig 84 (331)
+..|+|+||+|.+|.
T Consensus 117 ~~EIvvkDG~V~eIR 131 (131)
T PF11068_consen 117 GVEIVVKDGKVIEIR 131 (131)
T ss_dssp TEEEEEETTEEEEEE
T ss_pred CcEEEEECCEEEEeC
Confidence 689999999999873
No 492
>PRK05985 cytosine deaminase; Provisional
Probab=25.82 E-value=3.1e+02 Score=25.44 Aligned_cols=56 Identities=11% Similarity=0.122 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCC--CEEEEeCCCH-----HH-HHHHHHHHHcCCCEEEecCCccccchhhhhhh
Q 020079 272 TTRAIRLAEFVNT--PLYVVHVMSM-----DA-MEEIAKARKAGPNFLNTTIPLCDSCSNIIRMV 328 (331)
Q Consensus 272 i~~~~~l~~~~g~--~~~i~H~~~~-----~~-~~~i~~~~~~Gi~v~~~~~p~~~~~~~~~~~~ 328 (331)
+.+.++.+...|. ++.+.|+... .. .+.+++++++|+.|+.+ .|.......+.+|+
T Consensus 222 ~~~~~e~~~~~g~~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g~~v~~~-~~~~~~~~~~~~l~ 285 (391)
T PRK05985 222 LERIAARTRALGMQGRVAVSHAFCLGDLPEREVDRLAERLAEAGVAIMTN-APGSVPVPPVAALR 285 (391)
T ss_pred HHHHHHHHHHhCCCCCEehhhhhhhhcCCHHHHHHHHHHHHHcCCeEEEe-CCCCCCCCCHHHHH
Confidence 3444555555564 4889998642 11 25688999999988754 34444455555554
No 493
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=25.59 E-value=61 Score=30.75 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=27.3
Q ss_pred cCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccc
Q 020079 282 VNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSC 321 (331)
Q Consensus 282 ~g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~ 321 (331)
.+.+..+.|+...+. +.++++++.|+.+. .||.++..
T Consensus 238 l~~r~~~~H~~~l~~-~~~~~la~~g~~v~--~~P~~n~~ 274 (430)
T PRK06038 238 LGPDVLAAHCVWLSD-GDIEILRERGVNVS--HNPVSNMK 274 (430)
T ss_pred CCCCeEEEEEecCCH-HHHHHHHhcCCEEE--EChHHhhh
Confidence 356778889876555 56899999998777 67876653
No 494
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=25.52 E-value=56 Score=30.92 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=26.5
Q ss_pred CCCEEEEeCCCHHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 283 NTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 283 g~~~~i~H~~~~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
+.++.+.|+...+. +.+++++++|+.+. .||..+..+
T Consensus 238 ~~~~~~~H~~~l~~-~~l~~la~~g~~v~--~~P~sn~~l 274 (424)
T PRK08393 238 NEDVIAAHGVWLSS-RDIRILASAGVTVA--HNPASNMKL 274 (424)
T ss_pred CCCcEEEEeecCCH-HHHHHHHhcCCEEE--ECHHHHHhh
Confidence 45677889875544 67888999997666 778765543
No 495
>PRK05927 hypothetical protein; Provisional
Probab=25.49 E-value=5.4e+02 Score=23.75 Aligned_cols=130 Identities=11% Similarity=0.002 Sum_probs=64.4
Q ss_pred CChhhHHHHHHHHHhCCceEEecCcCCCCC-c---HHHHHHHHHHHhccceeecccccc----ccCCChhhHHHHHHHHH
Q 020079 122 ETIDDFFSGQAAALAGGTTMHIDFVIPING-S---LTAGFEAYEKKAKNSCMDYGFHMA----ITKWDEVVSDEMEVMVK 193 (331)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 193 (331)
.+.+++...++.+...|++.+.=.++..+. . ..+.++..++..+...+....... .........+.+.++.
T Consensus 76 ls~eei~~~a~~~~~~G~~~i~i~gG~~p~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk- 154 (350)
T PRK05927 76 LSFDEFRSLMQRYVSAGVKTVLLQGGVHPQLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALERLW- 154 (350)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHHHH-
Confidence 467778778888888999988733222222 1 122333333222211111000000 0000111234445555
Q ss_pred HhCCCeEEE-----EE----ecCCCCcCCHHHHHHHHHHHHHcCCcE-----EEEcCCchhhHHHHHHHHHcC
Q 020079 194 EKGINSFKF-----FM----AYKGSFMINDELLIEGFKRCKSLGALA-----MVHAENGDAVFEGQKRMIELG 252 (331)
Q Consensus 194 ~~g~~~ik~-----~~----~~~~~~~~~~~~l~~~~~~A~~~g~~v-----~~H~e~~~~~~~~~~~~~~~G 252 (331)
+.|.+.+-. .- .-..+...+.+.-.+.++.|++.|+++ ..|.|+.++..+....+.+.+
T Consensus 155 ~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~lGi~~~sg~l~G~gEt~e~ri~~l~~Lr~lq 227 (350)
T PRK05927 155 DAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRLGFRSTATMMFGHVESPEDILLHLQTLRDAQ 227 (350)
T ss_pred HcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHcCCCcCceeEEeeCCCHHHHHHHHHHHHHhh
Confidence 667653310 00 001122335577778999999999975 668888777666554444443
No 496
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=25.26 E-value=4.6e+02 Score=22.91 Aligned_cols=53 Identities=17% Similarity=-0.028 Sum_probs=28.6
Q ss_pred cCCcEEEEc--CCc---hhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCE
Q 020079 227 LGALAMVHA--ENG---DAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286 (331)
Q Consensus 227 ~g~~v~~H~--e~~---~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~ 286 (331)
.+.|+. |. .++ ...+...+.+.+.|..+--.+. .| .+...+.+..++++|...
T Consensus 86 ~~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipD--lp----~ee~~~~~~~~~~~gl~~ 143 (256)
T TIGR00262 86 PNIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVAD--LP----LEESGDLVEAAKKHGVKP 143 (256)
T ss_pred CCCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEECC--CC----hHHHHHHHHHHHHCCCcE
Confidence 477876 73 443 1233444566777775532221 12 133556777788888763
No 497
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=25.11 E-value=4.4e+02 Score=22.65 Aligned_cols=93 Identities=20% Similarity=0.115 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHcCCc-EEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCCEEEE-e-
Q 020079 214 DELLIEGFKRCKSLGAL-AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV-H- 290 (331)
Q Consensus 214 ~~~l~~~~~~A~~~g~~-v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~~~i~-H- 290 (331)
.+.++..++.|++.|.+ +.+|........... .+ ..........+.+...++++.++.+.+. |
T Consensus 83 ~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~---------~~-----~~~~~~~~~~l~~l~~~a~~~~i~l~~e~~~ 148 (274)
T COG1082 83 LEELKRAIELAKELGAKVVVVHPGLGAGADDPD---------SP-----EEARERWAEALEELAEIAEELGIGLALENHH 148 (274)
T ss_pred HHHHHHHHHHHHHcCCCeEEeecccCCcCCCCC---------CC-----cccHHHHHHHHHHHHHHHHHhCCceEEeecC
Confidence 34556678888888866 555654433211000 00 0111223456677888888888877776 2
Q ss_pred -CCC-----HHHHHHHHHHHHcCCCEEEecCCccccch
Q 020079 291 -VMS-----MDAMEEIAKARKAGPNFLNTTIPLCDSCS 322 (331)
Q Consensus 291 -~~~-----~~~~~~i~~~~~~Gi~v~~~~~p~~~~~~ 322 (331)
-.+ ...++.+.+.... +|.....+.|....
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~--~v~~~lD~~H~~~~ 184 (274)
T COG1082 149 HPGNVVETGADALDLLREVDSP--NVGLLLDTGHAFFA 184 (274)
T ss_pred CccceeecCHHHHHHHHhcCCC--ceEEEEecCchhhc
Confidence 211 2234444444333 34444445555544
No 498
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=25.08 E-value=5.2e+02 Score=23.44 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHH-cCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHHHhcCCC
Q 020079 213 NDELLIEGFKRCKS-LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285 (331)
Q Consensus 213 ~~~~l~~~~~~A~~-~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~~~l~~~~g~~ 285 (331)
+.+.+.+.++...+ .++|+.+-..+++-.+...+++.+.|+.++..+........+ +.+.+++++|+.
T Consensus 80 ~~eam~k~I~~v~~~~d~Pl~IDSt~p~a~eaaLk~~~e~G~~gR~IiNSIn~e~~~-----eel~llk~yg~a 148 (308)
T PRK00979 80 SPEAMEKYIDFVSEITDLPFLIDSTSPEARIAAAKYATELGLADRAIYNSINPSIEE-----EEIEALKESDIK 148 (308)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEeCCCHHHHHHHHHHhhhcCCCCceEEEeccCCCCH-----HHHHHHHHhCCc
Confidence 56777777766655 468888887777777777777777776665433332221111 236788888865
No 499
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=24.94 E-value=6.3e+02 Score=24.34 Aligned_cols=104 Identities=14% Similarity=0.056 Sum_probs=60.4
Q ss_pred CCeEEEEEecCCCCcCCHHHHHHHHHHHHH-cCCcEEEEcCCchhhHHHHHHHHHcCCCCcccccccCChHHHHHHHHHH
Q 020079 197 INSFKFFMAYKGSFMINDELLIEGFKRCKS-LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA 275 (331)
Q Consensus 197 ~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~e~~~i~~~ 275 (331)
++.|.+.... .+++.+.++++..++ .++|+.+=..+++..+...+. |.......... ..+.+++.
T Consensus 128 AD~IaL~~~s-----~dp~~v~~~Vk~V~~~~dvPLSIDT~dpevleaAlea----gad~~plI~Sa-----t~dN~~~m 193 (450)
T PRK04165 128 LDMVALRNAS-----GDPEKFAKAVKKVAETTDLPLILCSEDPAVLKAALEV----VADRKPLLYAA-----TKENYEEM 193 (450)
T ss_pred CCEEEEeCCC-----CCHHHHHHHHHHHHHhcCCCEEEeCCCHHHHHHHHHh----cCCCCceEEec-----CcchHHHH
Confidence 6666543321 256778888888776 589998888777666555432 32211111110 11334556
Q ss_pred HHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCC-CEEEec
Q 020079 276 IRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGP-NFLNTT 314 (331)
Q Consensus 276 ~~l~~~~g~~~~i~H~~~~~~~~~i~~~~~~Gi-~v~~~~ 314 (331)
..+++++|+++.+.|-.-..-.+.+.++.+.|+ ++..|.
T Consensus 194 ~~la~~yg~pvVv~~~dl~~L~~lv~~~~~~GI~dIILDP 233 (450)
T PRK04165 194 AELAKEYNCPLVVKAPNLEELKELVEKLQAAGIKDLVLDP 233 (450)
T ss_pred HHHHHHcCCcEEEEchhHHHHHHHHHHHHHcCCCcEEECC
Confidence 677888898888877421223346677788887 344443
No 500
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=24.92 E-value=4.7e+02 Score=22.85 Aligned_cols=44 Identities=16% Similarity=0.244 Sum_probs=27.8
Q ss_pred HHHHHhCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEcC
Q 020079 190 VMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE 236 (331)
Q Consensus 190 ~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e 236 (331)
+.+++.|.+.+.+. .+....+.+....+++.+++.|..+..-..
T Consensus 91 ~~~k~lGf~~IEiS---dGti~l~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 91 EECKELGFDAIEIS---DGTIDLPEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp HHHHHCT-SEEEE-----SSS---HHHHHHHHHHHCCTTSEEEEEES
T ss_pred HHHHHcCCCEEEec---CCceeCCHHHHHHHHHHHHHCCCEEeeccc
Confidence 33335677776653 234567888888999999999998887753
Done!