RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 020079
(331 letters)
>gnl|CDD|178530 PLN02942, PLN02942, dihydropyrimidinase.
Length = 486
Score = 530 bits (1367), Expect = 0.0
Identities = 224/257 (87%), Positives = 245/257 (95%)
Query: 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
SS+KILIKGGTVVNAHHQ++ADVYVEDGI+VAV PN+ V DDV+V+DATGKFVMPGGIDP
Sbjct: 3 SSTKILIKGGTVVNAHHQELADVYVEDGIIVAVAPNLKVPDDVRVIDATGKFVMPGGIDP 62
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMD 170
HTHLAM FMG+ETIDDFFSGQAAALAGGTTMHIDFVIP+NG+L AG+EAYEKKA+ SCMD
Sbjct: 63 HTHLAMPFMGTETIDDFFSGQAAALAGGTTMHIDFVIPVNGNLLAGYEAYEKKAEKSCMD 122
Query: 171 YGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGAL 230
YGFHMAITKWD+ VS +ME +VKEKGINSFKFFMAYKGS M+ DELL+EGFKRCKSLGAL
Sbjct: 123 YGFHMAITKWDDTVSRDMETLVKEKGINSFKFFMAYKGSLMVTDELLLEGFKRCKSLGAL 182
Query: 231 AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290
AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEAT RAIRLA+FVNTPLYVVH
Sbjct: 183 AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLYVVH 242
Query: 291 VMSMDAMEEIAKARKAG 307
VMS+DAMEEIA+ARK+G
Sbjct: 243 VMSIDAMEEIARARKSG 259
>gnl|CDD|238639 cd01314, D-HYD, D-hydantoinases (D-HYD) also called
dihydropyrimidases (DHPase) and related proteins;
DHPases are a family of enzymes that catalyze the
reversible hydrolytic ring opening of the amide bond in
five- or six-membered cyclic diamides, like
dihydropyrimidine or hydantoin. The hydrolysis of
dihydropyrimidines is the second step of reductive
catabolism of pyrimidines in human. The hydrolysis of
5-substituted hydantoins in microorganisms leads to
enantiomerically pure N-carbamyl amino acids, which are
used for the production of antibiotics, peptide
hormones, pyrethroids, and pesticides. HYDs are
classified depending on their stereoselectivity. This
family also includes collapsin response regulators
(CRMPs), cytosolic proteins involved in neuronal
differentiation and axonal guidance which have strong
homology to DHPases, but lack most of the active site
residues.
Length = 447
Score = 413 bits (1065), Expect = e-144
Identities = 148/264 (56%), Positives = 182/264 (68%), Gaps = 3/264 (1%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++IK GT+V A AD+ +EDG +VA+ PN+ V+V+DATGK+V+PGGIDPHTHL
Sbjct: 1 LIIKNGTIVTADGSFKADILIEDGKIVAIGPNLEAPGGVEVIDATGKYVLPGGIDPHTHL 60
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYG 172
+ FMG+ T DDF SG AA AGGTT IDF IP G SL E + KA S +DYG
Sbjct: 61 ELPFMGTVTADDFESGTRAAAAGGTTTIIDFAIPNKGQSLLEAVEKWRGKADGKSVIDYG 120
Query: 173 FHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
FHM IT W + V +E+ +VK KGI+SFK FMAYKG M++DE L++ KR K LGAL M
Sbjct: 121 FHMIITDWTDSVIEELPELVK-KGISSFKVFMAYKGLLMVDDEELLDVLKRAKELGALVM 179
Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
VHAENGD + E QK+++ G TGPE HALSRPP +E EAT RAIRLAE PLY+VHV
Sbjct: 180 VHAENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAIRLAELAGAPLYIVHVS 239
Query: 293 SMDAMEEIAKARKAGPNFLNTTIP 316
S +A +EIA+ARK G T P
Sbjct: 240 SKEAADEIARARKKGLPVYGETCP 263
>gnl|CDD|233694 TIGR02033, D-hydantoinase, D-hydantoinase. This model represents
the D-hydantoinase (dihydropyrimidinase) which primarily
converts 5,6-dihydrouracil to 3-ureidopropanoate but
also acts on dihydrothymine and hydantoin. The enzyme is
a metalloenzyme.
Length = 454
Score = 387 bits (995), Expect = e-133
Identities = 146/264 (55%), Positives = 175/264 (66%), Gaps = 2/264 (0%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
LI+GGTVVNA ADV +E G +VAV N+ D V+V+DATGK+V+PGGID HTHL
Sbjct: 1 KLIRGGTVVNADDVFQADVLIEGGKIVAVGSNLQPPDAVEVIDATGKYVLPGGIDVHTHL 60
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYG 172
M F G+ T DDFF+G AA AGGTT IDF +P G SLT E + +KA S +DYG
Sbjct: 61 EMPFGGTVTADDFFTGTKAAAAGGTTTIIDFALPSKGESLTEALETWHEKAEGKSVIDYG 120
Query: 173 FHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
FHM IT W++ V +E V E+GI SFK FMAYK M++DE L E KR K LGAL
Sbjct: 121 FHMMITDWNDHVLEEHIPEVVEEGITSFKVFMAYKNLLMVDDEELFEILKRAKELGALLQ 180
Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
VHAENGD + E Q R++ G TGPE HALSRPP E EA RAI LA + PLYVVHV
Sbjct: 181 VHAENGDVIAELQARLLAQGKTGPEYHALSRPPESEAEAVARAIALAALADAPLYVVHVS 240
Query: 293 SMDAMEEIAKARKAGPNFLNTTIP 316
+ DA++EIA+AR+ G T P
Sbjct: 241 TADAVDEIAEAREKGQPVYGETCP 264
>gnl|CDD|236240 PRK08323, PRK08323, phenylhydantoinase; Validated.
Length = 459
Score = 372 bits (957), Expect = e-127
Identities = 139/265 (52%), Positives = 171/265 (64%), Gaps = 7/265 (2%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
LIK GTVV A ADV +EDG + A+ N +V+DATGK+VMPGGIDPHTH
Sbjct: 2 STLIKNGTVVTADDTYKADVLIEDGKIAAIGAN----LGDEVIDATGKYVMPGGIDPHTH 57
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDY 171
+ M F G+ + DDF +G AA GGTT IDF + G SL EA+ KA + +DY
Sbjct: 58 MEMPFGGTVSSDDFETGTRAAACGGTTTIIDFALQPKGQSLREALEAWHGKAAGKAVIDY 117
Query: 172 GFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALA 231
GFHM IT W+EVV DEM +V+E GI SFK FMAYKG+ M++D+ L+ +R LGAL
Sbjct: 118 GFHMIITDWNEVVLDEMPELVEE-GITSFKLFMAYKGALMLDDDELLRALQRAAELGALP 176
Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
MVHAENGDA+ Q +++ G TGPE HALSRPP +EGEAT RAI LAE PLY+VHV
Sbjct: 177 MVHAENGDAIAYLQAKLLAEGKTGPEYHALSRPPEVEGEATNRAIMLAELAGAPLYIVHV 236
Query: 292 MSMDAMEEIAKARKAGPNFLNTTIP 316
+A+E I +AR G T P
Sbjct: 237 SCKEALEAIRRARARGQRVFGETCP 261
>gnl|CDD|184033 PRK13404, PRK13404, dihydropyrimidinase; Provisional.
Length = 477
Score = 205 bits (524), Expect = 1e-62
Identities = 97/255 (38%), Positives = 143/255 (56%), Gaps = 8/255 (3%)
Query: 57 IKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM 116
I+GGTVV A AD+ + G + A+ + G + +DATG+ V+PGG+D H H+
Sbjct: 8 IRGGTVVTATDTFQADIGIRGGRIAALGEGLGPGA--REIDATGRLVLPGGVDSHCHIDQ 65
Query: 117 EF-MGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCM-DYGF 173
G DDF++G +A GGTT I F G SL E Y ++A + DY F
Sbjct: 66 PSGDGIMMADDFYTGTVSAAFGGTTTVIPFAAQHRGQSLREAVEDYHRRAAGKAVIDYAF 125
Query: 174 HMAITKWD-EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
H+ + EV+++E+ ++ + G SFK FM Y ++D +++ + GA+ M
Sbjct: 126 HLIVADPTEEVLTEELPALIAQ-GYTSFKVFMTYDD-LKLDDRQILDVLAVARRHGAMVM 183
Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
VHAEN D + KR++ G+T P+ HA+SRP L E EAT RAI LAE V+ P+ +VHV
Sbjct: 184 VHAENHDMIAWLTKRLLAAGLTAPKYHAISRPMLAEREATHRAIALAELVDVPILIVHVS 243
Query: 293 SMDAMEEIAKARKAG 307
+A E+I +AR G
Sbjct: 244 GREAAEQIRRARGRG 258
>gnl|CDD|223122 COG0044, PyrC, Dihydroorotase and related cyclic amidohydrolases
[Nucleotide transport and metabolism].
Length = 430
Score = 199 bits (507), Expect = 2e-60
Identities = 77/260 (29%), Positives = 121/260 (46%), Gaps = 16/260 (6%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LIK VV+ ++AD+ ++DG + A+ N+ +++DA G V+PG +D H H
Sbjct: 3 LLIKNARVVDPGEDEVADILIKDGKIAAIGKNLEPTSGAEIIDAKGLLVLPGLVDLHVHF 62
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK----AKNSCMD 170
E + F +G AA AGG T +D P EA E K S +D
Sbjct: 63 REPGF--EHKETFETGSRAAAAGGVTTVVDM--PNTKPPIDTAEALEDKLERAKGKSVVD 118
Query: 171 YGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGAL 230
Y F+ +TK + + E V FK FM + ++D++L E + LGAL
Sbjct: 119 YAFYGGLTKGNLGKLELTERGV----EAGFKGFMDD-STGALDDDVLEEALEYAAELGAL 173
Query: 231 AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290
+VHAE+ D + EG G+ PE RPP+ E A R + LA +++ H
Sbjct: 174 ILVHAEDDDLIAEGVMN---EGLRAPELGLAGRPPIAEASAIARDLELARATGARVHICH 230
Query: 291 VMSMDAMEEIAKARKAGPNF 310
+ + +++E I A+ G
Sbjct: 231 ISTKESVELIRAAKAEGIRV 250
>gnl|CDD|238640 cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and Allantoinase
(ALN); L-Hydantoinases are a member of the
dihydropyrimidinase family, which catalyzes the
reversible hydrolytic ring opening of dihydropyrimidines
and hydantoins (five-membered cyclic diamides used in
biotechnology). But L-HYDs differ by having an L-enantio
specificity and by lacking activity on possible natural
substrates such as dihydropyrimidines. Allantoinase
catalyzes the hydrolytic cleavage of the five-member
ring of allantoin (5-ureidohydantoin) to form allantoic
acid.
Length = 447
Score = 143 bits (364), Expect = 2e-39
Identities = 88/280 (31%), Positives = 132/280 (47%), Gaps = 34/280 (12%)
Query: 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115
+IK G VV + AD+ V+ G + A+ P+I + +V+DA G VMPG ID H H+
Sbjct: 3 VIKNGRVVTPDGVREADIAVKGGKIAAIGPDIANTEAEEVIDAGGLVVMPGLIDTHVHIN 62
Query: 116 MEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKKAKNS 167
G + F +G AA AGG T ID +P+N +L A EA + K
Sbjct: 63 E--PGRTEWEGFETGTKAAAAGGITTIID--MPLNSIPPTTTVENLEAKLEAAQGKLH-- 116
Query: 168 CMDYGFHMAITKWDEVVS---DEMEVMVKEKGINSFKFFMAYKG--SF-MINDELLIEGF 221
+D GF W +V D++ + E G+ FK F+ G F ++DE L E
Sbjct: 117 -VDVGF------WGGLVPGNLDQLRPLD-EAGVVGFKCFLCPSGVDEFPAVDDEQLEEAM 168
Query: 222 KRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEF 281
K G++ VHAEN + Q++ G + SRP E EA R + LA+
Sbjct: 169 KELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKE 228
Query: 282 VNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSC 321
L++VH+ S +A+ I +AR G ++ T ++C
Sbjct: 229 TGCRLHIVHLSSAEAVPLIREARAEG---VDVT---VETC 262
>gnl|CDD|235732 PRK06189, PRK06189, allantoinase; Provisional.
Length = 451
Score = 129 bits (325), Expect = 7e-34
Identities = 84/276 (30%), Positives = 136/276 (49%), Gaps = 28/276 (10%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++I+GG VV AD+ +++G + + P I+ +++DA G +V PG ID H H
Sbjct: 5 LIIRGGKVVTPEGVYRADIGIKNGKIAEIAPEIS-SPAREIIDADGLYVFPGMIDVHVHF 63
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS---LTAGFEAYEKKAK----NS 167
G + F +G AA AGG T + D +P+N +T EA + KA+ S
Sbjct: 64 NEP--GRTHWEGFATGSAALAAGGCTTYFD--MPLNSIPPTVTR--EALDAKAELARQKS 117
Query: 168 CMDYGFHMAITKWDEVVSDEMEVMVK--EKGINSFKFFMAYKGS--FMINDEL-LIEGFK 222
+D+ W +V +E + + E G+ FK FM+ G+ F +D+L L EG K
Sbjct: 118 AVDFAL------WGGLVPGNLEHLRELAEAGVIGFKAFMSNSGTDEFRSSDDLTLYEGMK 171
Query: 223 RCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV 282
+LG + +HAE+ + + G T + SRP + E EA RA+ A+
Sbjct: 172 EIAALGKILALHAESDALTRHLTTQARQQGKTDVRDYLESRPVVAELEAVQRALLYAQET 231
Query: 283 NTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLC 318
PL+ VH+ S A+ IA+A+K G ++ ++ C
Sbjct: 232 GCPLHFVHISSGKAVALIAEAKKRG---VDVSVETC 264
>gnl|CDD|163175 TIGR03178, allantoinase, allantoinase. This enzyme carries out the
first step in the degradation of allantoin, a
ring-opening hydrolysis. The seed members of this model
are all in the vicinity of other genes involved in the
processes of xanthine/urate/allantoin catabolism.
Although not included in the seed, many eukaryotic
homologs of this family are included above the trusted
cutoff. Below the noise cutoff are related
hydantoinases.
Length = 443
Score = 128 bits (323), Expect = 1e-33
Identities = 84/274 (30%), Positives = 135/274 (49%), Gaps = 24/274 (8%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++I+GG V+ + ++ ADV V+ G + A+ P +G K++DA G V PG +D H H+
Sbjct: 2 LIIRGGRVILPNGEREADVGVKGGKIAAIGP-DILGPAAKIIDAGGLVVFPGVVDTHVHI 60
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS-LTAGFEAYEKKAK----NSCM 169
G + F +G AA AGG T +ID +P+N T + E K + +
Sbjct: 61 NEP--GRTEWEGFETGTRAAAAGGITTYID--MPLNSIPATTTRASLEAKFEAAKGKLAV 116
Query: 170 DYGFHMAITKWDEVVSDEMEVM--VKEKGINSFKFFMAYKGS--FM-INDELLIEGFKRC 224
D GF W +V ++ + + E G+ FK F++ G F ++D L +G +
Sbjct: 117 DVGF------WGGLVPYNLDDLRELDEAGVVGFKAFLSPSGDDEFPHVDDWQLYKGMREL 170
Query: 225 KSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT 284
LG L +VHAEN + G G + + SRP E EA R + LA+
Sbjct: 171 ARLGQLLLVHAENPAITSALGEEAPPQGGVGADAYLASRPVFAEVEAIRRTLALAKVTGC 230
Query: 285 PLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLC 318
++VVH+ S +A+E I +A++ G L+ T+ C
Sbjct: 231 RVHVVHLSSAEAVELITEAKQEG---LDVTVETC 261
>gnl|CDD|238627 cd01302, Cyclic_amidohydrolases, Cyclic amidohydrolases, including
hydantoinase, dihydropyrimidinase, allantoinase, and
dihydroorotase, are involved in the metabolism of
pyrimidines and purines, sharing the property of
hydrolyzing the cyclic amide bond of each substrate to
the corresponding N-carbamyl amino acids. Allantoinases
catalyze the degradation of purines, while
dihydropyrimidinases and hydantoinases, a microbial
counterpart of dihydropyrimidinase, are involved in
pyrimidine degradation. Dihydroorotase participates in
the de novo synthesis of pyrimidines.
Length = 337
Score = 119 bits (301), Expect = 2e-31
Identities = 64/220 (29%), Positives = 88/220 (40%), Gaps = 45/220 (20%)
Query: 101 KFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVI--PINGSLTAGFE 158
V+PG ID H HL + G+ +DF SG AA AGG T ID P L A
Sbjct: 1 LLVLPGFIDIHVHL-RDPGGTTYKEDFESGSRAAAAGGVTTVIDMPNTGPPPIDLPAIEL 59
Query: 159 AYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI--NDEL 216
+ ++S +D+ FH I V+DE++ + + GINS K FM Y + +D
Sbjct: 60 KIKLAEESSYVDFSFHAGI--GPGDVTDELKKLF-DAGINSLKVFMNYYFGELFDVDDGT 116
Query: 217 LIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAI 276
L+ F S G MVHAE RA
Sbjct: 117 LMRTFLEIASRGGPVMVHAE-------------------------------------RAA 139
Query: 277 RLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIP 316
+LAE +++ HV S +A+E I A+ G P
Sbjct: 140 QLAEEAGANVHIAHVSSGEALELIKFAKNKGVKVTCEVCP 179
>gnl|CDD|179417 PRK02382, PRK02382, dihydroorotase; Provisional.
Length = 443
Score = 110 bits (276), Expect = 4e-27
Identities = 72/259 (27%), Positives = 122/259 (47%), Gaps = 23/259 (8%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
L+K G V + Q DV ++ G + AV +++ +V+DA G ++PGGID H H
Sbjct: 4 ALLKDGRVYYNNSLQPRDVRIDGGKITAVGKDLDGSSSEEVIDARGMLLLPGGIDVHVH- 62
Query: 115 AMEF--MGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKA----KNSC 168
F G + +++G +A AGG T +D P T E++++KA + S
Sbjct: 63 ---FREPGYTHKETWYTGSRSAAAGGVTTVVD--QPNTDPPTVDGESFDEKAELAARKSI 117
Query: 169 MDYGFHMAITK-WDEVVSDEMEVMVKEKGINSF-KFFMA-YKGSFMINDELLIEGFKRCK 225
+D+G + +T WD + S + E+G+ + + FMA G I++EL E
Sbjct: 118 VDFGINGGVTGNWDPLES------LWERGVFALGEIFMADSTGGMGIDEELFEEALAEAA 171
Query: 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285
LG LA VHAE+ D E K + G + + RP E A RA+ +A
Sbjct: 172 RLGVLATVHAEDEDLFDELAKLLK--GDADADAWSAYRPAAAEAAAVERALEVASETGAR 229
Query: 286 LYVVHVMSMDAMEEIAKAR 304
+++ H+ + + ++ +
Sbjct: 230 IHIAHISTPEGVDAARREG 248
>gnl|CDD|169193 PRK08044, PRK08044, allantoinase; Provisional.
Length = 449
Score = 100 bits (251), Expect = 1e-23
Identities = 82/292 (28%), Positives = 135/292 (46%), Gaps = 44/292 (15%)
Query: 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
S ++IK GTV+ + ++ D+ V+ G + A+ ++ GD +V+DA+G V PG +D H
Sbjct: 2 SFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDL--GDAKEVMDASGLVVSPGMVDAH 59
Query: 112 THLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPIN--------GSLTAGFEAYEKK 163
TH++ G + + +G AA GG T I+ +P+N S+ F+A + K
Sbjct: 60 THISEP--GRSHWEGYETGTRAAAKGGITTMIE--MPLNQLPATVDRASIELKFDAAKGK 115
Query: 164 AKNSCMDYGFHMAITKWDEVVSDEMEVM--VKEKGINSFKFFMA------YKGSFM-IND 214
G +VS ++ + + E G+ FK F+A F +ND
Sbjct: 116 LTIDAAQLG---------GLVSYNLDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVND 166
Query: 215 ELLIEGFKRCKSLGALAMVHAENG---DAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271
+G ++ LG +VH EN D + E KR G + SRP E EA
Sbjct: 167 WQFYKGAQKLGELGQPVLVHCENALICDELGEEAKRE---GRVTAHDYVASRPVFTEVEA 223
Query: 272 TTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIPLCDSCSN 323
R + LA+ L+V H+ S + +EE+ +AR+ G + C+SC +
Sbjct: 224 IRRVLYLAKVAGCRLHVCHISSPEGVEEVTRARQEGQDV------TCESCPH 269
>gnl|CDD|233153 TIGR00857, pyrC_multi, dihydroorotase, multifunctional complex
type. In contrast to the homodimeric type of
dihydroorotase found in E. coli, this class tends to
appear in a large, multifunctional complex with
aspartate transcarbamoylase. Homologous domains appear
in multifunctional proteins of higher eukaryotes. In
some species, including Pseudomonas putida and P.
aeruginosa, this protein is inactive but is required as
a non-catalytic subunit of aspartate transcarbamoylase
(ATCase). In these species, a second, active
dihydroorotase is also present. The seed for this model
does not include any example of the dihydroorotase
domain of eukaryotic multidomain pyrimidine synthesis
proteins. All proteins described by This model should
represent active and inactive dihydroorotase per se and
functionally equivalent domains of multifunctional
proteins from higher eukaryotes, but exclude related
proteins such as allantoinase [Purines, pyrimidines,
nucleosides, and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 411
Score = 98.3 bits (245), Expect = 5e-23
Identities = 61/242 (25%), Positives = 101/242 (41%), Gaps = 10/242 (4%)
Query: 71 ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSG 130
D+ VE G + + D +V+DA G V+PG ID H HL + G E +D SG
Sbjct: 6 VDILVEGGRIKKIGKLRIPPDA-EVIDAKGLLVLPGFIDLHVHLR-DP-GEEYKEDIESG 62
Query: 131 QAAALAGGTTMHIDF--VIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEM 188
AA GG T D P + ++ K S +D + +T+ ++
Sbjct: 63 SKAAAHGGFTTVADMPNTKPPIDTPETLEWKLQRLKKVSLVDVHLYGGVTQGNQGKELTE 122
Query: 189 EVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRM 248
+KE G F GS + + + + G +HAE+ D ++ G
Sbjct: 123 AYELKEAGAVGRMFTD--DGSEVQDILSMRRALEYAAIAGVPIALHAEDPDLIYGGVMH- 179
Query: 249 IELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGP 308
G + + +RPP E A R + LA+ P+++ H+ + +++E I KA+ G
Sbjct: 180 --EGPSAAQLGLPARPPEAEEVAVARLLELAKHAGCPVHICHISTKESLELIVKAKSQGI 237
Query: 309 NF 310
Sbjct: 238 KI 239
>gnl|CDD|238643 cd01318, DHOase_IIb, Dihydroorotase (DHOase), subgroup IIb; DHOases
catalyze the reversible interconversion of carbamoyl
aspartate to dihydroorotate, a key reaction in
pyrimidine biosynthesis. This group contains the archeal
members of the DHOase family.
Length = 361
Score = 90.9 bits (226), Expect = 1e-20
Identities = 60/211 (28%), Positives = 89/211 (42%), Gaps = 23/211 (10%)
Query: 100 GKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEA 159
G ++PG ID H H E G +DF SG AA AGG T +D +P T EA
Sbjct: 1 GLLILPGVIDIHVHF-REP-GLTYKEDFVSGSRAAAAGGVTTVMD--MPNTKPPTTTAEA 56
Query: 160 YEKK----AKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK-GSFMIND 214
+K A S +DYG + +T E + + + +K FM G + ++
Sbjct: 57 LYEKLRLAAAKSVVDYGLYFGVTG-SEDLE-----ELDKAPPAGYKIFMGDSTGDLLDDE 110
Query: 215 ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTR 274
E L F L HAE+ D + E +K + H R AT R
Sbjct: 111 ETLERIFAEGS---VLVTFHAEDEDRLRENRKELKGESA-----HPRIRDAEAAAVATAR 162
Query: 275 AIRLAEFVNTPLYVVHVMSMDAMEEIAKARK 305
A++LA L++ HV + + ++ I KA+
Sbjct: 163 ALKLARRHGARLHICHVSTPEELKLIKKAKP 193
>gnl|CDD|181716 PRK09236, PRK09236, dihydroorotase; Reviewed.
Length = 444
Score = 82.6 bits (205), Expect = 1e-17
Identities = 67/254 (26%), Positives = 112/254 (44%), Gaps = 33/254 (12%)
Query: 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
+ILIK +VN DV +E+G + + +I+ V+DA G++++PG ID
Sbjct: 2 KRILIKNARIVNEGKIFEGDVLIENGRIAKIASSISAKSADTVIDAAGRYLLPGMIDDQV 61
Query: 113 HLAMEFM--GSETIDDFFSGQAAALAGGTTMHIDF--VIPINGSLTAGFEAYEKKAKNSC 168
H F G D S AA+AGG T ++ P +L A Y+ A+ S
Sbjct: 62 H----FREPGLTHKGDIASESRAAVAGGITSFMEMPNTNPPTTTLEALEAKYQIAAQRSL 117
Query: 169 MDYGFHMAITKWDEVVSDEMEVMVK--EKGINSFKFFM-AYKGSFMINDELLIEG-FKRC 224
+Y F+ T +D ++ + + K + K FM A G+ ++++ +E F+
Sbjct: 118 ANYSFYFGAT------NDNLDEIKRLDPKRVCGVKVFMGASTGNMLVDNPETLERIFRDA 171
Query: 225 KSLGALAMVHAENGDAVFEGQKRMIEL---GITGPEGHALSRPPLLEGEA----TTRAIR 277
+L A H E+ + + E I E H L R EA ++ A+
Sbjct: 172 PTLIA---THCEDTPTIKANLAKYKEKYGDDIP-AEMHPLIR----SAEACYKSSSLAVS 223
Query: 278 LAEFVNTPLYVVHV 291
LA+ T L+V+H+
Sbjct: 224 LAKKHGTRLHVLHI 237
>gnl|CDD|236055 PRK07575, PRK07575, dihydroorotase; Provisional.
Length = 438
Score = 81.6 bits (202), Expect = 3e-17
Identities = 69/278 (24%), Positives = 119/278 (42%), Gaps = 30/278 (10%)
Query: 51 SSSKILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
+LI+ ++ + + DV VEDG +VA+ P I+ V+DA G ++PG ID
Sbjct: 1 MMMSLLIRNARILLPSGELLLGDVLVEDGKIVAIAPEISATAVDTVIDAEGLTLLPGVID 60
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK----AK 165
P H G E +D F+ A GG T ++ +P LT A + K A+
Sbjct: 61 PQVHFREP--GLEHKEDLFTASRACAKGGVTSFLE--MPNTKPLTTTQAALDDKLARAAE 116
Query: 166 NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFM-AYKGSFMINDELLIEG-FKR 223
++YGF + T D + ++ K FM + G ++++E +E F
Sbjct: 117 KCVVNYGFFIGAT------PDNLPELLTANPTCGIKIFMGSSHGPLLVDEEAALERIFAE 170
Query: 224 CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283
L A VHAE+ + + GI+ P H+ + AT A++L++
Sbjct: 171 GTRLIA---VHAEDQARIRARRAEFA--GISDPADHSQIQDEEAALLATRLALKLSKKYQ 225
Query: 284 TPLYVVHVMSMDAMEEIAKAR------KAGPN--FLNT 313
L+++H+ + E + + + + P LNT
Sbjct: 226 RRLHILHLSTAIEAELLRQDKPSWVTAEVTPQHLLLNT 263
>gnl|CDD|222250 pfam13594, Amidohydro_5, Amidohydrolase. This family of enzymes
are a part of a large metal dependent hydrolase
superfamily. The family includes Adenine deaminase
EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine
and ammonia. Adenine deaminases reaction is important
for adenine utilisation as a purine and also as a
nitrogen source. This family also includes
dihydroorotase and N-acetylglucosamine-6-phosphate
deacetylases, EC:3.5.1.25 These enzymes catalyze the
reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=>
D-glucosamine 6-phosphate + acetate. This family
includes the catalytic domain of urease alpha subunit.
Dihydroorotases (EC:3.5.2.3) are also included.
Length = 66
Score = 72.3 bits (178), Expect = 2e-16
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 73 VYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132
+ +EDG + A+ + + +V+DA GK+V+PG ID H HL E + +G A
Sbjct: 1 ILIEDGKIAAIGGDDLPDAEAEVIDAEGKYVLPGLIDMHVHLGEE----PGRETLETGAA 56
Query: 133 AALAGGTT 140
AALAGG T
Sbjct: 57 AALAGGVT 64
>gnl|CDD|181632 PRK09060, PRK09060, dihydroorotase; Validated.
Length = 444
Score = 76.5 bits (189), Expect = 2e-15
Identities = 73/264 (27%), Positives = 118/264 (44%), Gaps = 38/264 (14%)
Query: 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115
++KGGTVVN + AD+ + DG + A+ +V+D G V+PG ID H
Sbjct: 8 ILKGGTVVNPDGEGRADIGIRDGRIAAIGDLSGASAG-EVIDCRGLHVLPGVIDSQVHFR 66
Query: 116 MEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK---AKNS--CMD 170
G E +D +G AA+ GG T F +P LT EA K A++ C D
Sbjct: 67 EP--GLEHKEDLETGSRAAVLGGVTAV--FEMPNTNPLTTTAEALADKLARARHRMHC-D 121
Query: 171 YGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFM-AYKGSFMINDELLIE-----GFKRC 224
+ F++ T+ D DE+ + + G K FM + G ++ D+ + G +R
Sbjct: 122 FAFYVGGTR-DNA--DELAELERLPGCAGIKVFMGSSTGDLLVEDDEGLRRILRNGRRR- 177
Query: 225 KSLGALAMVHAENGDAVFEGQKRMIE---LGITG-PEGHALSRPPLLEGEATTRAIRLAE 280
A H+E+ + R+ E L + G P H + R AT R +RLA
Sbjct: 178 ------AAFHSED-------EYRLRERKGLRVEGDPSSHPVWRDEEAALLATRRLVRLAR 224
Query: 281 FVNTPLYVVHVMSMDAMEEIAKAR 304
++V+HV + + ++ +A +
Sbjct: 225 ETGRRIHVLHVSTAEEIDFLADHK 248
>gnl|CDD|238642 cd01317, DHOase_IIa, Dihydroorotase (DHOase), subgroup IIa; DHOases
catalyze the reversible interconversion of carbamoyl
aspartate to dihydroorotate, a key reaction in
pyrimidine biosynthesis. This subgroup also contains
proteins that lack the active site, like unc-33, a
C.elegans protein involved in axon growth.
Length = 374
Score = 71.5 bits (176), Expect = 7e-14
Identities = 58/226 (25%), Positives = 87/226 (38%), Gaps = 21/226 (9%)
Query: 92 DVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTT----M-HIDFV 146
D +V+DA GK + PG +D H HL G E + SG AA AGG T M + + V
Sbjct: 1 DAEVIDAEGKILAPGLVDLHVHL--REPGFEYKETLESGAKAAAAGGFTTVVCMPNTNPV 58
Query: 147 IPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMV--KEKGINSFKFFM 204
I + + + G A+TK + E+ + E G F
Sbjct: 59 IDNPAVVELLKNRAKDVGIVRVLPIG---ALTKGLKGE--ELTEIGELLEAGAVGF---- 109
Query: 205 AYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRP 264
+ G + + ELL + L +VH E+ G M E + G P
Sbjct: 110 SDDGKPIQDAELLRRALEYAAMLDLPIIVHPEDPSLAGGGV--MNEGKVASRLGLP-GIP 166
Query: 265 PLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNF 310
P E R + LAE ++ H+ + ++E I KA+ G
Sbjct: 167 PEAETIMVARDLELAEATGARVHFQHLSTARSLELIRKAKAKGLPV 212
>gnl|CDD|236479 PRK09357, pyrC, dihydroorotase; Validated.
Length = 423
Score = 68.7 bits (169), Expect = 5e-13
Identities = 72/287 (25%), Positives = 112/287 (39%), Gaps = 71/287 (24%)
Query: 53 SKILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
ILIK G V++ ++ADV ++DG + A+ NI + +V+DATG V PG +D H
Sbjct: 1 MMILIKNGRVIDPKGLDEVADVLIDDGKIAAIGENIE-AEGAEVIDATGLVVAPGLVDLH 59
Query: 112 THLAMEFMGSETIDDFFSGQAAALAGG-TTMH--------ID------------------ 144
HL G E + +G AA AGG TT+ ID
Sbjct: 60 VHLREP--GQEDKETIETGSRAAAAGGFTTVVAMPNTKPVIDTPEVVEYVLDRAKEAGLV 117
Query: 145 FVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFM 204
V+P+ G++T G G + E + KE G+ +F
Sbjct: 118 DVLPV-GAITKGLA-------------GEELT----------EFGAL-KEAGVVAF---- 148
Query: 205 AYKGSFMINDELLIEGFKRCKSLGALAMVHAE----NGDAVFEGQKRMIELGITGPEGHA 260
+ G + + L+ + K+L L H E V + LG+ G
Sbjct: 149 SDDGIPVQDARLMRRALEYAKALDLLIAQHCEDPSLTEGGVMNEGEVSARLGLPG----- 203
Query: 261 LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAG 307
P + E R + LAE +++ HV + ++E I A+ G
Sbjct: 204 --IPAVAEEVMIARDVLLAEATGARVHICHVSTAGSVELIRWAKALG 248
>gnl|CDD|236423 PRK09237, PRK09237, dihydroorotase; Provisional.
Length = 380
Score = 68.0 bits (167), Expect = 9e-13
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 55 ILIKGGTVVN--AHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
+L++GG V++ + D+ +EDG + AV +I+ KV+D +G +V PG ID H
Sbjct: 1 LLLRGGRVIDPANGIDGVIDIAIEDGKIAAVAGDIDGSQAKKVIDLSGLYVSPGWIDLHV 60
Query: 113 H 113
H
Sbjct: 61 H 61
>gnl|CDD|235265 PRK04250, PRK04250, dihydroorotase; Provisional.
Length = 398
Score = 67.9 bits (166), Expect = 1e-12
Identities = 65/257 (25%), Positives = 101/257 (39%), Gaps = 49/257 (19%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
K L+KG V + +E+G + + G +V+ G ++PG ID H H
Sbjct: 5 KFLLKGRIVE-------GGIGIENGRISKISLRDLKGK--EVIKVKGGIILPGLIDVHVH 55
Query: 114 LAMEFMGS--ETIDDFFSGQAAALAGGTTMHIDFV---IPINGSLTAGFEAYEKKAKNSC 168
L +F S ETI+ SG AAL GG T+ D PI T +E + A+
Sbjct: 56 L-RDFEESYKETIE---SGTKAALHGGITLVFDMPNTKPPIMDEKT--YEKRMRIAEKKS 109
Query: 169 -MDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227
DY + I E + K F A G + + +
Sbjct: 110 YADYALNFLIAGNCEKAEEIKADFYKI-------FMGASTGGIFSEN--FEVDYA--CAP 158
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
G ++ VHAE+ + + E PE RPP E A RA+ + + PL+
Sbjct: 159 GIVS-VHAEDPELIREF-----------PE-----RPPEAEVVAIERALEAGKKLKKPLH 201
Query: 288 VVHVMSMDAMEEIAKAR 304
+ H+ + D ++ I K+
Sbjct: 202 ICHISTKDGLKLILKSN 218
>gnl|CDD|178392 PLN02795, PLN02795, allantoinase.
Length = 505
Score = 66.3 bits (162), Expect = 4e-12
Identities = 78/305 (25%), Positives = 113/305 (37%), Gaps = 57/305 (18%)
Query: 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGI 108
S +++ G + A V VE G +V+V VLD VMPG I
Sbjct: 50 SKRVVTPAGVIPGA-------VEVEGGRIVSVTKEEEAPKSQKKPHVLDYGNAVVMPGLI 102
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLT----AGFEAYEKKA 164
D H HL G + F +G AA AGG T +D +P+N + E + A
Sbjct: 103 DVHVHL--NEPGRTEWEGFPTGTKAAAAGGITTLVD--MPLNSFPSTTSVETLELKIEAA 158
Query: 165 KNSCM-DYGFHMAITKWDEVVSD------EMEVMVKEKGINSFKFFMAYKGSFMIND--- 214
K D GF W +V + +E ++ + G K FM G IND
Sbjct: 159 KGKLYVDVGF------WGGLVPENAHNASVLEELL-DAGALGLKSFMCPSG---INDFPM 208
Query: 215 ---ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271
+ G +VHAE V ++ + SRPP E EA
Sbjct: 209 TTATHIKAALPVLAKYGRPLLVHAEVVSPV--ESDSRLDADPRSYSTYLKSRPPSWEQEA 266
Query: 272 ---------TTRAIRLAEFVNTPLYVVHVM-SMDAMEEIAKARKAGPNFLNTTIP--LCD 319
TR +AE +++VH+ + ++E I +A+ G + T P L
Sbjct: 267 IRQLLEVAKDTRPGGVAE--GAHVHIVHLSDAESSLELIKEAKAKGDSVTVETCPHYLAF 324
Query: 320 SCSNI 324
S I
Sbjct: 325 SAEEI 329
>gnl|CDD|234114 TIGR03121, one_C_dehyd_A, formylmethanofuran dehydrogenase subunit
A. Members of this largely archaeal protein family are
subunit A of the formylmethanofuran dehydrogenase.
Nomenclature in some bacteria may reflect inclusion of
the formyltransferase described by TIGR03119 as part of
the complex, and therefore call this protein
formyltransferase/hydrolase complex Fhc subunit A. Note
that this model does not distinguish tungsten (FwdA)
from molybdenum-containing (FmdA) forms of this enzyme;
a single gene from this family is expressed
constitutively in Methanobacterium thermoautotrophicum,
which has both tungsten and molybdenum forms and may
work interchangeably.
Length = 556
Score = 66.2 bits (162), Expect = 5e-12
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 54 KILIKGGTVV---NAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+ILIK GTV N ++ D+++ DG +V P KV+DA+GK VM GG+D
Sbjct: 1 EILIKNGTVYDPANGIDGEVMDIFIRDGKIVE--PVSGGTKPAKVIDASGKLVMAGGVDS 58
Query: 111 HTHLA 115
HTH+A
Sbjct: 59 HTHIA 63
>gnl|CDD|181288 PRK08204, PRK08204, hypothetical protein; Provisional.
Length = 449
Score = 62.3 bits (152), Expect = 8e-11
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 53 SKILIKGGTVVNAHHQ----QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
+ LI+GGTV+ D+ +E + AV P+I D +V+DA G VMPG +
Sbjct: 2 KRTLIRGGTVLTMDPAIGDLPRGDILIEGDRIAAVAPSIE-APDAEVVDARGMIVMPGLV 60
Query: 109 DPHTHL 114
D H H
Sbjct: 61 DTHRHT 66
>gnl|CDD|223479 COG0402, SsnA, Cytosine deaminase and related metal-dependent
hydrolases [Nucleotide transport and metabolism /
General function prediction only].
Length = 421
Score = 61.7 bits (150), Expect = 1e-10
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 52 SSKILIKGGTVV---NAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
+ +LI+G ++ + D+ +EDG +VA+ N D +V+DA GK V+PG +
Sbjct: 1 MTMLLIRGDLLLTNDPEGRIEDGDLVIEDGKIVAIGANAEGPPDEEVIDAKGKLVLPGFV 60
Query: 109 DPHTHLAMEFM 119
+ HTHL +
Sbjct: 61 NAHTHLDQTLL 71
>gnl|CDD|238629 cd01304, FMDH_A, Formylmethanofuran dehydrogenase (FMDH) subunit A;
Methanogenic bacteria and archea derive the energy for
autotrophic growth from methanogenesis, the reduction of
CO2 with molecular hydrogen as the electron donor. FMDH
catalyzes the first step in methanogenesis, the
formyl-methanofuran synthesis. In this step, CO2 is
bound to methanofuran and subsequently reduced to the
formyl state with electrons derived from hydrogen.
Length = 541
Score = 61.7 bits (150), Expect = 1e-10
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 57 IKGGTVV---NAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
IK GTV N + + D+++ DG +V + KV+DA+GK VM GG+D H+H
Sbjct: 1 IKNGTVYDPLNGINGEKMDIFIRDGKIVES---SSGAKPAKVIDASGKVVMAGGVDMHSH 57
Query: 114 LA 115
+A
Sbjct: 58 IA 59
>gnl|CDD|238634 cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases,
subgroup C is part of the superfamily of
metallo-dependent hydrolases, a large group of proteins
that show conservation in their 3-dimensional fold (TIM
barrel) and in details of their active site. The vast
majority of the members have a conserved metal binding
site, involving four histidines and one aspartic acid
residue. In the common reaction mechanism, the metal ion
(or ions) deprotonate a water molecule for a
nucleophilic attack on the substrate. The function of
this subgroup is unknown.
Length = 359
Score = 58.5 bits (142), Expect = 1e-09
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 77 DGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM--EFMGSETIDD 126
DG +VAV I D +V+DA GK V PG ID H+HL + E ET D
Sbjct: 1 DGKIVAVGAEITTPADAEVIDAKGKHVTPGLIDAHSHLGLDEEGGVRETSDA 52
>gnl|CDD|224150 COG1229, FwdA, Formylmethanofuran dehydrogenase subunit A [Energy
production and conversion].
Length = 575
Score = 57.9 bits (140), Expect = 2e-09
Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 5/66 (7%)
Query: 53 SKILIKGGTV---VNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
+ILIK G V +N + + D+ V+DG +V + + KV+DA+GK VMPGG+D
Sbjct: 3 MEILIKNGIVYDPLNGINGEKMDICVKDGKIV--EESEVSESKAKVIDASGKLVMPGGVD 60
Query: 110 PHTHLA 115
H+H+A
Sbjct: 61 SHSHVA 66
>gnl|CDD|238623 cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the
atrazine degradation pathway and related hydrolases.
Atrazine, a chlorinated herbizide, can be catabolized by
a variety of different bacteria. The first three steps
of the atrazine dehalogenation pathway are catalyzed by
atrazine chlorohydrolase (AtzA), hydroxyatrazine
ethylaminohydrolase (AtzB), and N-isopropylammelide
N-isopropylaminohydrolase (AtzC). All three enzymes
belong to the superfamily of metal dependent hydrolases.
AtzA and AtzB, beside other related enzymes are
represented in this CD.
Length = 411
Score = 57.6 bits (140), Expect = 3e-09
Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 55 ILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPNINVGD--DVKVLDATGKFVMPGGID 109
ILI+ GT+V +++ DV VEDG +VAV P + + +V+DA GK VMPG ++
Sbjct: 1 ILIRNGTIVTTDPRRVLEDGDVLVEDGRIVAVGPALPLPAYPADEVIDAKGKVVMPGLVN 60
Query: 110 PHTHLAM 116
HTHLAM
Sbjct: 61 THTHLAM 67
>gnl|CDD|181411 PRK08393, PRK08393, N-ethylammeline chlorohydrolase; Provisional.
Length = 424
Score = 56.7 bits (137), Expect = 6e-09
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
ILIK G V+ + ++ ADV +E +V V+ NIN D V+DA+G V PG I+ HT
Sbjct: 3 ILIKNGYVIYGENLKVIRADVLIEGNKIVEVKRNINKPAD-TVIDASGSVVSPGFINAHT 61
Query: 113 HLAM 116
H M
Sbjct: 62 HSPM 65
>gnl|CDD|182623 PRK10657, PRK10657, isoaspartyl dipeptidase; Provisional.
Length = 388
Score = 56.4 bits (137), Expect = 6e-09
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGD---DVKVLDATGKFVMPGGIDPH 111
L+K V D+ + G ++A+ NIN+ D D++V+DA+GK ++PG ID H
Sbjct: 3 TLLKNAHVYAPEDLGKKDILIAGGKIIAIADNINIPDIVPDIEVIDASGKILVPGFIDQH 62
Query: 112 THLA 115
H+
Sbjct: 63 VHII 66
>gnl|CDD|238622 cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid
amidohydrolases) catalyze the hydrolysis of
N-acyl-D-amino acids to produce the corresponding
D-amino acids, which are used as intermediates in the
synthesis of pesticides, bioactive peptides, and
antibiotics.
Length = 415
Score = 55.8 bits (135), Expect = 1e-08
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 54 KILIKGGTVV--NAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
++I+ GTVV ADV + DG + A+ P ++ +V+DA G V PG ID H
Sbjct: 1 DLVIRNGTVVDGTGAPPFTADVGIRDGRIAAIGPILSTSAR-EVIDAAGLVVAPGFIDVH 59
Query: 112 TH 113
TH
Sbjct: 60 TH 61
>gnl|CDD|180895 PRK07228, PRK07228, N-ethylammeline chlorohydrolase; Provisional.
Length = 445
Score = 55.4 bits (134), Expect = 2e-08
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 53 SKILIKGGTVVNAHHQ---QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
ILIK +V + + DV +ED + AV +++ D +DATGK V+PG I
Sbjct: 1 MTILIKNAGIVTMNAKREIVDGDVLIEDDRIAAVGDRLDLEDYDDHIDATGKVVIPGLIQ 60
Query: 110 PHTHL 114
H HL
Sbjct: 61 GHIHL 65
>gnl|CDD|224149 COG1228, HutI, Imidazolonepropionase and related amidohydrolases
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 406
Score = 54.7 bits (132), Expect = 2e-08
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 53 SKILIKGGTVVNAHHQQI-ADVYVEDGIVVAV-QPNINVGDDVKVLDATGKFVMPGGIDP 110
+ + G + V +EDG +VAV I++ +V+DA GK V PG ID
Sbjct: 10 AMLATLAGRGLPGLGIIEDGAVLIEDGKIVAVGPEEIDIPAGAEVIDAKGKTVTPGLIDA 69
Query: 111 HTHLAM 116
HTHL
Sbjct: 70 HTHLGF 75
>gnl|CDD|238434 cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA,
catalyzes the hydrolysis of the N-acetyl group of
N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to
glucosamine 6-phosphate and acetate. This is the first
committed step in the biosynthetic pathway to
amino-sugar-nucleotides, which is needed for cell wall
peptidoglycan and teichoic acid biosynthesis.
Deacetylation of N-acetylglucosamine is also important
in lipopolysaccharide synthesis and cell wall recycling.
Length = 374
Score = 51.4 bits (124), Expect = 2e-07
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++IK ++ + V VEDG +VA+ P + + +++D G++++PG ID H H
Sbjct: 1 LIIKNARILTPGGLEDGAVLVEDGKIVAIGPEDELEEADEIIDLKGQYLVPGFIDIHIHG 60
Query: 115 AMEFMGSETIDDFFSGQAAALAG-GTT 140
+ + A ALA GTT
Sbjct: 61 GGGADFMDGTAEALKTIAEALAKHGTT 87
>gnl|CDD|238621 cd01296, Imidazolone-5PH,
Imidazolonepropionase/imidazolone-5-propionate hydrolase
(Imidazolone-5PH) catalyzes the third step in the
histidine degradation pathway, the hydrolysis of
(S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to
N-formimidoyl-L-glutamate. In bacteria, the enzyme is
part of histidine utilization (hut) operon.
Length = 371
Score = 51.1 bits (123), Expect = 3e-07
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 73 VYVEDGIVVAVQP----NINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFF 128
+ + DG + AV P + +DA G+ V PG +D HTHL F G D+F
Sbjct: 1 IAIRDGRIAAVGPAASLPAPGPAAAEEIDAGGRAVTPGLVDCHTHLV--FAGDRV-DEF- 56
Query: 129 SGQAAALAGGTTMHI 143
AA LAG + I
Sbjct: 57 ---AARLAGASYEEI 68
>gnl|CDD|224490 COG1574, COG1574, Predicted metal-dependent hydrolase with the
TIM-barrel fold [General function prediction only].
Length = 535
Score = 51.2 bits (123), Expect = 3e-07
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 52 SSKILIKGGTV--VNAHHQQIADVYVEDGIVVAVQPN--IN--VGDDVKVLDATGKFVMP 105
++ +++ G + ++ V ++DG +VAV + + G +V+D GKFV+P
Sbjct: 4 AADLILHNGRIYTMDEARPTAEAVAIKDGRIVAVGSDAELKALAGPATEVIDLKGKFVLP 63
Query: 106 GGIDPHTHLAM 116
G +D H HL
Sbjct: 64 GFVDAHLHLIS 74
>gnl|CDD|223933 COG1001, AdeC, Adenine deaminase [Nucleotide transport and
metabolism].
Length = 584
Score = 50.8 bits (122), Expect = 5e-07
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
+++K G +V+ +I D+ + G +V V + +V+DA G++++PG ID H
Sbjct: 26 LVLKNGRIVDVVTGEIYKGDIAIAGGRIVGV-IGEYRAEATEVIDAAGRYIVPGFIDAHL 84
Query: 113 HLAMEFMGSETIDDFFSGQAAALAGGTT 140
H+ + A L GTT
Sbjct: 85 HIESSMLTPSEFA------RAVLPHGTT 106
>gnl|CDD|180363 PRK06038, PRK06038, N-ethylammeline chlorohydrolase; Provisional.
Length = 430
Score = 50.5 bits (121), Expect = 5e-07
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
I+IK V+ + V +EDG + V GD V+DA G VMPG ++ HT
Sbjct: 4 IIIKNAYVLTMDAGDLKKGSVVIEDGTITEVS-ESTPGDADTVIDAKGSVVMPGLVNTHT 62
Query: 113 HLAM 116
H AM
Sbjct: 63 HAAM 66
>gnl|CDD|236478 PRK09356, PRK09356, imidazolonepropionase; Validated.
Length = 406
Score = 50.2 bits (121), Expect = 7e-07
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 71 ADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHL 114
+ +EDG +V V P ++ +V+DA GK V PG ID HTHL
Sbjct: 29 GAIAIEDGKIVWVGPEADLPAAYAAEVIDAGGKLVTPGLIDCHTHL 74
>gnl|CDD|238618 cd01293, Bact_CD, Bacterial cytosine deaminase and related
metal-dependent hydrolases. Cytosine deaminases (CDs)
catalyze the deamination of cytosine, producing uracil
and ammonia. They play an important role in pyrimidine
salvage. CDs are present in prokaryotes and fungi, but
not mammalian cells. The bacterial enzymes, but not the
fungal enzymes, are related to the adenosine deaminases
(ADA). The bacterial enzymes are iron dependent and
hexameric.
Length = 398
Score = 48.8 bits (117), Expect = 2e-06
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 70 IADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+ D+ +EDG + A+ P + V D + +DA G+ V+P +DPH HL
Sbjct: 14 LVDIAIEDGRIAAIGPALAVPPDAEEVDAKGRLVLPAFVDPHIHL 58
>gnl|CDD|181059 PRK07627, PRK07627, dihydroorotase; Provisional.
Length = 425
Score = 48.5 bits (116), Expect = 2e-06
Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 54 KILIKGGTVVN--AHHQQIADVYVEDGIVVAV-QPNINVGDDVKVLDATGKFVMPGGIDP 110
KI IKGG +++ A + AD+YV G + A+ Q D K +DA+G V PG +D
Sbjct: 2 KIHIKGGRLIDPAAGTDRQADLYVAAGKIAAIGQAPAGFNAD-KTIDASGLIVCPGLVDL 60
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTT 140
L G E S AAA+AGG T
Sbjct: 61 SARLREP--GYEYKATLESEMAAAVAGGVT 88
>gnl|CDD|238632 cd01307, Met_dep_hydrolase_B, Metallo-dependent hydrolases,
subgroup B is part of the superfamily of
metallo-dependent hydrolases, a large group of proteins
that show conservation in their 3-dimensional fold (TIM
barrel) and in details of their active site. The vast
majority of the members have a conserved metal binding
site, involving four histidines and one aspartic acid
residue. In the common reaction mechanism, the metal ion
(or ions) deprotonate a water molecule for a
nucleophilic attack on the substrate. The function of
this subgroup is unknown.
Length = 338
Score = 48.1 bits (115), Expect = 3e-06
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 72 DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
DV +E+G + AV + +++DA G +V PG ID H H
Sbjct: 1 DVAIENGKIAAVGAALAAPAATQIVDAGGCYVSPGWIDLHVH 42
>gnl|CDD|238617 cd01292, metallo-dependent_hydrolases, Superfamily of
metallo-dependent hydrolases (also called amidohydrolase
superfamily) is a large group of proteins that show
conservation in their 3-dimensional fold (TIM barrel)
and in details of their active site. The vast majority
of the members have a conserved metal binding site,
involving four histidines and one aspartic acid residue.
In the common reaction mechanism, the metal ion (or
ions) deprotonate a water molecule for a nucleophilic
attack on the substrate. The family includes urease
alpha, adenosine deaminase, phosphotriesterase
dihydroorotases, allantoinases, hydantoinases, AMP-,
adenine and cytosine deaminases, imidazolonepropionase,
aryldialkylphosphatase, chlorohydrolases,
formylmethanofuran dehydrogenases and others.
Length = 275
Score = 46.9 bits (111), Expect = 5e-06
Identities = 41/231 (17%), Positives = 64/231 (27%), Gaps = 33/231 (14%)
Query: 108 IDPHTHLAM----------------EFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING 151
ID H HL E + +D A LAGG T +D
Sbjct: 2 IDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDM--GSTP 59
Query: 152 SLTAGFEAYEKKAKNS----------CMDYGFHMAITKWDEVVSDEMEV-MVKEKGINSF 200
T A E A+ + + A D + E G
Sbjct: 60 PPTTTKAAIEAVAEAARASAGIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAVGL 119
Query: 201 KFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHA 260
K Y + ++DE L + + LG ++HA + ++ L G
Sbjct: 120 KLAGPY-TATGLSDESLRRVLEEARKLGLPVVIHAGELPDPTRALEDLVALLRLGGRVVI 178
Query: 261 --LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPN 309
+S E A E Y++ A E + + + G
Sbjct: 179 GHVSHLDPELLELLKEAGVSLEVCPLSNYLLGRDGEGA-EALRRLLELGIR 228
>gnl|CDD|238625 cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases. YtcJ
is a Bacillus subtilis ORF of unknown function. The
Arabidopsis homolog LAF3 has been identified as a factor
required for photochrome A signalling.
Length = 479
Score = 46.9 bits (112), Expect = 7e-06
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 72 DVYVEDGIVVAV----QPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM 116
V V DG +VAV + G +V+D GK V+PG ID H+HL +
Sbjct: 1 AVAVRDGRIVAVGSDAEAKALKGPATEVIDLKGKTVLPGFIDSHSHLLL 49
>gnl|CDD|236369 PRK09061, PRK09061, D-glutamate deacylase; Validated.
Length = 509
Score = 46.2 bits (110), Expect = 1e-05
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 55 ILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
++I+ G VV+ + DV ++ G + AV GD + +DATG V PG ID H
Sbjct: 21 LVIRNGRVVDPETGLDAVRDVGIKGGKIAAVGTAAIEGD--RTIDATGLVVAPGFIDLHA 78
Query: 113 H 113
H
Sbjct: 79 H 79
Score = 28.5 bits (64), Expect = 6.4
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 270 EATTRAIRLAEFVNTPLYVVHVMSM------DAMEEIAKARKAGPN 309
+A I A +++ HV S + + KA+ G +
Sbjct: 232 DAYQELIAAAAETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLD 277
>gnl|CDD|236002 PRK07369, PRK07369, dihydroorotase; Provisional.
Length = 418
Score = 45.7 bits (109), Expect = 2e-05
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 69 QIADVYVEDGIVVAVQPNI-NVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDF 127
+IADV +EDG + A++P+I + D +++DA+G + PG +D ++H + E G E +
Sbjct: 20 RIADVLIEDGKIQAIEPHIDPIPPDTQIIDASGLILGPGLVDLYSH-SGE-PGFEERETL 77
Query: 128 FSGQAAALAGGTT 140
S AAA AGG T
Sbjct: 78 ASLAAAAAAGGFT 90
>gnl|CDD|238624 cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases,
subgroup A is part of the superfamily of
metallo-dependent hydrolases, a large group of proteins
that show conservation in their 3-dimensional fold (TIM
barrel) and in details of their active site. The vast
majority of the members have a conserved metal binding
site, involving four histidines and one aspartic acid
residue. In the common reaction mechanism, the metal ion
(or ions) deprotonate a water molecule for a
nucleophilic attack on the substrate. The function of
this subgroup is unknown.
Length = 342
Score = 44.6 bits (106), Expect = 4e-05
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 10/57 (17%)
Query: 95 VLDATGKFVMPGGIDPHTHLAMEFMGSETIDDF----------FSGQAAALAGGTTM 141
V+D GK +MPG ID HTHL + +AA AG TT+
Sbjct: 3 VIDLGGKTLMPGLIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTV 59
>gnl|CDD|235963 PRK07203, PRK07203, putative chlorohydrolase/aminohydrolase;
Validated.
Length = 442
Score = 43.8 bits (104), Expect = 7e-05
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 55 ILIKGGTVVNAHHQQI----ADVYVEDGIVVAVQPNINVGD---DVKVLDATGKFVMPGG 107
+LI GT + + + +E ++V + + D + +DA GK +MPG
Sbjct: 2 LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELKAKYPDAEFIDAKGKLIMPGL 61
Query: 108 IDPHTHL 114
I+ H H+
Sbjct: 62 INSHNHI 68
>gnl|CDD|179247 PRK01211, PRK01211, dihydroorotase; Provisional.
Length = 409
Score = 43.7 bits (103), Expect = 7e-05
Identities = 55/254 (21%), Positives = 103/254 (40%), Gaps = 37/254 (14%)
Query: 72 DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131
++ VEDG + +++ + ++ A ++P D H H G +DF +G
Sbjct: 17 EIEVEDGKIKSIKKDAGNIGKKELKGA----ILPAATDIHVHFRTP--GETEKEDFSTGT 70
Query: 132 AAALAGGTTMHIDFVIPINGSLTAGFEAYEKK----AKNSCMDYGFHMAITKWDEVVSDE 187
+A+ GGTT +D +P N + A+ K A + +D+ + T + ++ DE
Sbjct: 71 LSAIFGGTTFIMD--MPNNNIPIKDYNAFSDKLGRVAPKAYVDFSLYSMETGNNALILDE 128
Query: 188 MEVMVKEKGINSFKFFMAYKGSFMINDELLIEG-FKRCKSLGALAMVHAENGDAVFEGQK 246
+ K +M G+ N + G K+ HAE + + + Q
Sbjct: 129 RSI--------GLKVYMG--GTTNTNGTDIEGGEIKKINEANIPVFFHAELSECLRKHQF 178
Query: 247 RMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV-HVMSMDAMEEIAKARK 305
L H L+RP E +A++ + ++ ++ HV S+D + R+
Sbjct: 179 ESKNL-----RDHDLARPI----ECEIKAVKYVKNLDLKTKIIAHVSSIDVIGRF--LRE 227
Query: 306 AGPN--FLNTTIPL 317
P+ LN +PL
Sbjct: 228 VTPHHLLLNDDMPL 241
>gnl|CDD|224733 COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase
[Carbohydrate transport and metabolism].
Length = 380
Score = 43.8 bits (104), Expect = 8e-05
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 54 KILIKGGTVVNAHHQQIAD---VYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+K G + H + D V +EDG + AV P + D +++D G ++PG ID
Sbjct: 1 MYALKNGRIFTGH--GVLDGGAVVIEDGKIEAVVP-AELPADAEIIDLKGALLVPGFIDL 57
Query: 111 HTH-----LAMEFMGSETID 125
H H M+ ET++
Sbjct: 58 HIHGGGGADFMDAGSVETLE 77
>gnl|CDD|130246 TIGR01178, ade, adenine deaminase. The family described by this
model includes an experimentally characterized adenine
deaminase of Bacillus subtilis. It also include a member
from Methanobacterium thermoautotrophicum, in which
adenine deaminase activity has been detected [Purines,
pyrimidines, nucleosides, and nucleotides, Salvage of
nucleosides and nucleotides].
Length = 552
Score = 44.0 bits (104), Expect = 8e-05
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
I+IK +++ ++ +I D+ + +G + V + VKV+DA G++ +PG ID H
Sbjct: 2 IVIKNAKIIDVYNGEIIPGDIAIANGHIAGVGKY----NGVKVIDALGEYAVPGFIDAHI 57
Query: 113 HLAMEFM 119
H+ +
Sbjct: 58 HIESSML 64
>gnl|CDD|226473 COG3964, COG3964, Predicted amidohydrolase [General function
prediction only].
Length = 386
Score = 43.3 bits (102), Expect = 1e-04
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 55 ILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
IL+ GG +++ +I ++ + +G + A + + +++DA G V PG ID H
Sbjct: 6 ILLTGGRLIDPARGIDEITNIAIINGKIAAAD-DYPAPAETQIIDADGCIVSPGLIDLHV 64
Query: 113 H 113
H
Sbjct: 65 H 65
>gnl|CDD|237967 PRK15446, PRK15446, phosphonate metabolism protein PhnM;
Provisional.
Length = 383
Score = 42.9 bits (102), Expect = 1e-04
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
++++ +V + +EDG + A+ P + +DA G +++PG +D H
Sbjct: 1 MMEMILSNARLVLPDEVVDGSLLIEDGRIAAIDPGASALPGA--IDAEGDYLLPGLVDLH 58
Query: 112 T-HLAMEFM 119
T +L
Sbjct: 59 TDNLEKHLA 67
>gnl|CDD|221936 pfam13147, Amidohydro_4, Amidohydrolase. This family of enzymes
are a part of a large metal dependent hydrolase
superfamily. The family includes Adenine deaminase
EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine
and ammonia. Adenine deaminases reaction is important
for adenine utilisation as a purine and also as a
nitrogen source. This family also includes
dihydroorotase and N-acetylglucosamine-6-phosphate
deacetylases, EC:3.5.1.25 These enzymes catalyze the
reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=>
D-glucosamine 6-phosphate + acetate. This family
includes the catalytic domain of urease alpha subunit.
Dihydroorotases (EC:3.5.2.3) are also included.
Length = 304
Score = 42.5 bits (99), Expect = 2e-04
Identities = 26/161 (16%), Positives = 46/161 (28%), Gaps = 5/161 (3%)
Query: 97 DATGKFVMPGGIDPHTH---LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSL 153
DA G+ V+PG +D H H L G + +G AA G T + L
Sbjct: 1 DAKGRLVLPGLVDLHVHGRPLDKSEDGGPYRAEAEAGLAALAGAGVTSALLDGGWEPELL 60
Query: 154 T-AGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212
T A+ + E++ E + ++ A
Sbjct: 61 TRLLVRVLVDGLIGLGNLGATLEALKRLVELLEAEGVALPLASVLDG-PGLEALLREAKK 119
Query: 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGI 253
+L+ G + + G + +L +
Sbjct: 120 AGLILLVGHAPADLGDGAVEKGLDALFLLALGHEVAEDLHL 160
>gnl|CDD|238633 cd01308, Isoaspartyl-dipeptidase, Isoaspartyl dipeptidase
hydrolyzes the beta-L-isoaspartyl linkages in
dipeptides, as part of the degradative pathway to
eliminate proteins with beta-L-isoaspartyl peptide
bonds, bonds whereby the beta-group of an aspartate
forms the peptide link with the amino group of the
following amino acid. Formation of this bond is a
spontaneous nonenzymatic reaction in nature and can
profoundly effect the function of the protein.
Isoaspartyl dipeptidase is an octameric enzyme that
contains a binuclear zinc center in the active site of
each subunit and shows a strong preference of
hydrolyzing Asp-Leu dipeptides.
Length = 387
Score = 42.4 bits (100), Expect = 2e-04
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTH 113
LIK V + D+ + G ++A++ +N+ ++V V+D GK ++PG ID H H
Sbjct: 3 LIKNAEVYAPEYLGKKDILIAGGKILAIEDQLNLPGYENVTVVDLHGKILVPGFIDQHVH 62
Query: 114 LA 115
+
Sbjct: 63 II 64
>gnl|CDD|216825 pfam01979, Amidohydro_1, Amidohydrolase family. This family of
enzymes are a a large metal dependent hydrolase
superfamily. The family includes Adenine deaminase
EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine
and ammonia. Adenine deaminases reaction is important
for adenine utilisation as a purine and also as a
nitrogen source. This family also includes
dihydroorotase and N-acetylglucosamine-6-phosphate
deacetylases, EC:3.5.1.25 These enzymes catalyze the
reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=>
D-glucosamine 6-phosphate + acetate. This family
includes the catalytic domain of urease alpha subunit.
Dihydroorotases (EC:3.5.2.3) are also included.
Length = 307
Score = 41.1 bits (96), Expect = 4e-04
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 102 FVMPGGIDPHTHLAMEFMGSETI-DDFFSGQAAALAGGTTMHIDF 145
V+PG ID H HL + E + +G A L GTT +D
Sbjct: 1 IVLPGLIDAHVHLESPLLRGEDSYEAILTGAKAMLRSGTTTVLDT 45
>gnl|CDD|236184 PRK08203, PRK08203, hydroxydechloroatrazine ethylaminohydrolase;
Reviewed.
Length = 451
Score = 41.4 bits (98), Expect = 5e-04
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 55 ILIKGGTVV---NAHHQQIAD--VYVEDGIVVAVQPN-INVGDDVKVLDATGKFVMPGGI 108
+ IK + +A ++IAD + VE G +V V P +V DA G V PG +
Sbjct: 3 LWIKNPLAIVTMDAARREIADGGLVVEGGRIVEVGPGGALPQPADEVFDARGHVVTPGLV 62
Query: 109 DPHTHL 114
+ H H
Sbjct: 63 NTHHHF 68
>gnl|CDD|180337 PRK05985, PRK05985, cytosine deaminase; Provisional.
Length = 391
Score = 40.7 bits (96), Expect = 7e-04
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 71 ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG 120
D+ + DG + A+ P + +V D G +PG +D H HL F G
Sbjct: 17 VDILIRDGRIAAIGPALAAPPGAEVEDGGGALALPGLVDGHIHLDKTFWG 66
>gnl|CDD|181039 PRK07572, PRK07572, cytosine deaminase; Validated.
Length = 426
Score = 40.8 bits (96), Expect = 7e-04
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++++ + + + D+ + G + AV+P + + + +DA G+ V P +DPH H+
Sbjct: 4 LIVRNANLPDG--RTGIDIGIAGGRIAAVEPGLQ-AEAAEEIDAAGRLVSPPFVDPHFHM 60
>gnl|CDD|218322 pfam04909, Amidohydro_2, Amidohydrolase. These proteins are
amidohydrolases that are related to pfam01979.
Length = 272
Score = 40.3 bits (94), Expect = 7e-04
Identities = 28/153 (18%), Positives = 46/153 (30%), Gaps = 9/153 (5%)
Query: 108 IDPHTHLAMEF--------MGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEA 159
ID H HL M D + L G + + + + S
Sbjct: 1 IDAHAHLPGGSIPDPRLPLMDRRGYDPRDASPEDYLVLGAALGVARAVIVAASCRGANNR 60
Query: 160 YEKKAKNSCMDYGFHMAITKWD-EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLI 218
+A + A+ D E + E+E + E G + G +++ L
Sbjct: 61 VLAEALKRPGRFVGGAALPPPDPEDAAAELERRLAELGFRGVRLNPHPGGGPLLDPRLDD 120
Query: 219 EGFKRCKSLGALAMVHAENGDAVFEGQKRMIEL 251
F+ LG +H GDA + L
Sbjct: 121 PIFEALAELGLPVDLHTGFGDAGEDLDAAQPLL 153
>gnl|CDD|236062 PRK07583, PRK07583, cytosine deaminase-like protein; Validated.
Length = 438
Score = 40.7 bits (96), Expect = 8e-04
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 71 ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
D+ + DG + A+ P D++ +D G+ V P +D HTHL
Sbjct: 41 VDIEIADGKIAAILPAGGAPDELPAVDLKGRMVWPCFVDMHTHL 84
>gnl|CDD|226179 COG3653, COG3653, N-acyl-D-aspartate/D-glutamate deacylase
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 579
Score = 40.3 bits (94), Expect = 0.001
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 55 ILIKGGTVVNA--HHQQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPH 111
++I+ G + + + DV + DG++ AV G + +DA G+ V PG ID H
Sbjct: 8 VVIRDGLIFDGTGNPPFTTDVGIRDGVIAAVAKGALDGTGCPEEVDAAGRIVAPGFIDVH 67
Query: 112 THLAMEFM 119
TH E +
Sbjct: 68 THYDAEVL 75
>gnl|CDD|132012 TIGR02967, guan_deamin, guanine deaminase. This model describes
guanine deaminase, which hydrolyzes guanine to xanthine
and ammonia. Xanthine can then be converted to urate by
xanthine dehydrogenase, and urate subsequently degraded.
In some bacteria, the guanine deaminase gene is found
near the xdhABC genes for xanthine dehydrogenase.
Non-homologous forms of guanine deaminase also exist, as
well as distantly related forms outside the scope of
this model [Purines, pyrimidines, nucleosides, and
nucleotides, Other].
Length = 401
Score = 40.3 bits (95), Expect = 0.001
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 66 HHQQIADVYVEDGIVVAVQPNINV----GDDVKVLDATGKFVMPGGIDPHTHLA-MEFMG 120
+ + + VE+G +VAV + V++ D G +MPG ID H H E +
Sbjct: 2 EYFEDGLLVVENGRIVAVGDYAELKETLPAGVEIDDYRGHLIMPGFIDTHIHYPQTEMIA 61
Query: 121 S 121
S
Sbjct: 62 S 62
>gnl|CDD|180548 PRK06380, PRK06380, metal-dependent hydrolase; Provisional.
Length = 418
Score = 40.3 bits (94), Expect = 0.001
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 55 ILIKGGTVVNAHHQQ---IADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
ILIK +V + ++ +VY+E +V V ++N D ++DATGK VMPG I+ H
Sbjct: 3 ILIKNAWIVTQNEKREILQGNVYIEGNKIVYVG-DVNEEADY-IIDATGKVVMPGLINTH 60
Query: 112 THLAM 116
H+ M
Sbjct: 61 AHVGM 65
>gnl|CDD|181631 PRK09059, PRK09059, dihydroorotase; Validated.
Length = 429
Score = 40.4 bits (95), Expect = 0.001
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 70 IADVYVEDGIVVAVQPNI---NVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDD 126
I V +EDG++VA + +++D GK V PG +D + G+E +
Sbjct: 22 IGTVLIEDGVIVAAGKGAGNQGAPEGAEIVDCAGKAVAPGLVDARVFVGEP--GAEHRET 79
Query: 127 FFSGQAAALAGGTT 140
S AA AGG T
Sbjct: 80 IASASRAAAAGGVT 93
>gnl|CDD|233321 TIGR01224, hutI, imidazolonepropionase. This enzyme catalyzes the
third step in histidine degradation [Energy metabolism,
Amino acids and amines].
Length = 377
Score = 39.7 bits (93), Expect = 0.002
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 73 VYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSG 130
+ + G +V + + + +++D G V PG +DPHTHL F G +++F
Sbjct: 6 ILIHGGKIVWIGQLAALPGEEATEIIDCGGGLVTPGLVDPHTHLV--FAGDR-VNEF--- 59
Query: 131 QAAALAGGTTMHI 143
L G + + I
Sbjct: 60 -EMKLQGASYLEI 71
>gnl|CDD|183497 PRK12394, PRK12394, putative metallo-dependent hydrolase;
Provisional.
Length = 379
Score = 39.4 bits (92), Expect = 0.002
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 18/113 (15%)
Query: 55 ILIKGGTVVN--AHHQQIADVYVEDGIVVAVQPNINVGD--DVKVLDATGKFVMPGGIDP 110
ILI G +++ + +I ++ + + I+V + +++ A G V PG ID
Sbjct: 5 ILITNGHIIDPARNINEINNLRIINDIIV---DADKYPVASETRIIHADGCIVTPGLIDY 61
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSL-TAGFEAYEK 162
H H+ + G+E G T +D GS TA F+A+ +
Sbjct: 62 HAHVF--YDGTEG---GVRPDMYMPPNGVTTVVD-----AGSAGTANFDAFYR 104
>gnl|CDD|132622 TIGR03583, EF_0837, probable amidohydrolase EF_0837/AHA_3915.
Members of this family of relatively uncommon proteins
are found in both Gram-positive (e.g. Enterococcus
faecalis) and Gram-negative (e.g. Aeromonas hydrophila)
bacteria, as part of a cluster of conserved proteins.
These proteins resemble aminohydrolases (see pfam01979),
including dihydroorotases. The function is unknown
[Hypothetical proteins, Conserved].
Length = 365
Score = 39.3 bits (92), Expect = 0.002
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATG-KFVMPGGIDPHTH 113
+LIK G VN D+ +EDG + AV I + +D G +V G ID HTH
Sbjct: 3 LLIKNGRTVNG---TPVDIAIEDGKIAAVGTTITGSAK-QTIDLEGETYVSAGWIDDHTH 58
>gnl|CDD|238641 cd01316, CAD_DHOase, The eukaryotic CAD protein is a trifunctional
enzyme of carbamoylphosphate synthetase-aspartate
transcarbamoylase-dihydroorotase, which catalyzes the
first three steps of de novo pyrimidine nucleotide
biosynthesis. Dihydroorotase (DHOase) catalyzes the
third step, the reversible interconversion of carbamoyl
aspartate to dihydroorotate.
Length = 344
Score = 38.6 bits (90), Expect = 0.003
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 104 MPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSL-TAGFEAYEK 162
+PG ID H HL E G+ +DF SG AALAGG TM + A + +
Sbjct: 5 LPGLIDVHVHLR-EP-GATHKEDFASGTKAALAGGFTMVRAMPNTNPSIVDVASLKLVQS 62
Query: 163 KA-KNSCMDYGFHMAIT 178
A + DY F + T
Sbjct: 63 LAQAKARCDYAFSIGAT 79
>gnl|CDD|132357 TIGR03314, Se_ssnA, putative selenium metabolism protein SsnA.
Members of this protein family are found exclusively in
genomes that contain putative set of labile
selenium-dependent enzyme accessory proteins as well as
homologs of a labile selenium-dependent purine
hydroxylase. A mutant in this gene in Escherichia coli
had improved stationary phase viability. The function is
unknown.
Length = 441
Score = 37.8 bits (88), Expect = 0.006
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 55 ILIKGGTVVN----AHHQQIADVYVEDGIVVAVQPNINVGD---DVKVLDATGKFVMPGG 107
+LI GT V Q+ D+ ++ ++ AV P + + +DA GK +MPG
Sbjct: 1 LLIGNGTAVQLDPTRPIQEGGDIAIDGDVIKAVGPTEELKQKYPEATFIDAKGKLIMPGF 60
Query: 108 IDPHTHL 114
I+ H H
Sbjct: 61 INTHNHF 67
>gnl|CDD|238221 cd00375, Urease_alpha, Urease alpha-subunit; Urease is a
nickel-dependent metalloenzyme that catalyzes the
hydrolysis of urea to form ammonia and carbon dioxide.
Nickel-dependent ureases are found in bacteria, fungi
and plants. Their primary role is to allow the use of
external and internally generated urea as a nitrogen
source. The enzyme consists of 3 subunits, alpha, beta
and gamma, which can be fused and present on a single
protein chain and which in turn forms multimers, mainly
trimers. The large alpha subunit is the catalytic domain
containing an active site with a bi-nickel center
complexed by a carbamylated lysine. The beta and gamma
subunits play a role in subunit association to form the
higher order trimers.
Length = 567
Score = 38.1 bits (89), Expect = 0.006
Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 27/84 (32%)
Query: 71 ADVYVEDGIVVA------------VQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF 118
AD+ ++DG +VA V PN+ VG +V+ GK V GGID H H
Sbjct: 83 ADIGIKDGRIVAIGKAGNPDIMDGVTPNMIVGPSTEVIAGEGKIVTAGGIDTHVH----- 137
Query: 119 MGSETIDDFFSGQ--AAALAGGTT 140
F Q ALA G T
Sbjct: 138 --------FICPQQIEEALASGIT 153
>gnl|CDD|234738 PRK00369, pyrC, dihydroorotase; Provisional.
Length = 392
Score = 37.8 bits (88), Expect = 0.006
Identities = 37/147 (25%), Positives = 59/147 (40%), Gaps = 28/147 (19%)
Query: 100 GKFVMPGGIDPHTHL-AMEFMGSETIDDFFSGQAAALAGGTTMHIDF---VIPING--SL 153
G ++PG ID H HL ++ E + SG + A GG T+ D + P+N ++
Sbjct: 42 GTLILPGAIDLHVHLRGLKLSYKEDV---ASGTSEAAYGGVTLVADMPNTIPPLNTPEAI 98
Query: 154 TAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMIN 213
T E ++ +DY + +TK E V D++ I +K F
Sbjct: 99 TEKLAELEYYSR---VDYFVYSGVTKDPEKV-DKL-------PIAGYKIFP--------E 139
Query: 214 DELLIEGFKRCKSLGALAMVHAENGDA 240
D E F+ L ++H E A
Sbjct: 140 DLEREETFRVLLKSRKLKILHPEVPLA 166
>gnl|CDD|215172 PLN02303, PLN02303, urease.
Length = 837
Score = 38.2 bits (89), Expect = 0.006
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 17/110 (15%)
Query: 44 GPQCGIQSSSKI--LIKGGTVVNAHHQQIADVYVEDGIVVA------------VQPNINV 89
G G ++ + +I +++ AD+ ++DG++V V N+ V
Sbjct: 323 GQATGYGAADSLDTVITNAVIIDYTGIYKADIGIKDGLIVGIGKAGNPDVMDGVTSNMIV 382
Query: 90 GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGT 139
G + +V+ G V GGID H H + +E I SG + GGT
Sbjct: 383 GVNTEVIAGEGMIVTAGGIDCHVHFICPQLATEAIA---SGITTLVGGGT 429
>gnl|CDD|237304 PRK13206, ureC, urease subunit alpha; Reviewed.
Length = 573
Score = 37.8 bits (88), Expect = 0.007
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 16/82 (19%)
Query: 71 ADVYVEDGIVVA------------VQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF 118
ADV + DG +VA V P++ +G +++ G+ + G ID H H F
Sbjct: 89 ADVGIRDGRIVAIGKAGNPDIMDGVHPDLVIGPSTEIIAGNGRILTAGAIDCHVH----F 144
Query: 119 MGSETIDDFFSGQAAALAGGTT 140
+ + +D+ + L GG T
Sbjct: 145 ICPQIVDEALAAGITTLIGGGT 166
>gnl|CDD|237305 PRK13207, ureC, urease subunit alpha; Reviewed.
Length = 568
Score = 37.5 bits (88), Expect = 0.008
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 21/83 (25%)
Query: 71 ADVYVEDGIVVA--------VQPNIN--VGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG 120
AD+ ++DG +VA +Q ++ +G +V+ G V GGID H H F+
Sbjct: 85 ADIGIKDGRIVAIGKAGNPDIQDGVDIIIGPGTEVIAGEGLIVTAGGIDTHIH----FIC 140
Query: 121 SETIDDFFSGQAAALAGGTTMHI 143
+ I+ ALA G T I
Sbjct: 141 PQQIE-------EALASGVTTMI 156
>gnl|CDD|238628 cd01303, GDEase, Guanine deaminase (GDEase). Guanine deaminase is
an aminohydrolase responsible for the conversion of
guanine to xanthine and ammonia, the first step to
utilize guanine as a nitrogen source. This reaction also
removes the guanine base from the pool and therefore can
play a role in the regulation of cellular GTP and the
guanylate nucleotide pool.
Length = 429
Score = 36.5 bits (85), Expect = 0.015
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 11/59 (18%)
Query: 66 HHQQIADVYVEDGIVVAVQPNI-----------NVGDDVKVLDATGKFVMPGGIDPHTH 113
+ A VEDG++V V NI +V+D+ +F++PG ID H H
Sbjct: 15 ELVEDALRVVEDGLIVVVDGNIIAAGAAETLKRAAKPGARVIDSPNQFILPGFIDTHIH 73
>gnl|CDD|236419 PRK09228, PRK09228, guanine deaminase; Provisional.
Length = 433
Score = 36.3 bits (85), Expect = 0.019
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 75 VEDGIVVAVQPNINV----GDDVKVLDATGKFVMPGGIDPHTH 113
VEDG +VA P + D +V D GK ++PG ID H H
Sbjct: 36 VEDGRIVAAGPYAELRAQLPADAEVTDYRGKLILPGFIDTHIH 78
>gnl|CDD|223875 COG0804, UreC, Urea amidohydrolase (urease) alpha subunit [Amino
acid transport and metabolism].
Length = 568
Score = 36.5 bits (85), Expect = 0.019
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 21/83 (25%)
Query: 71 ADVYVEDGIVVA--------VQPNIN--VGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG 120
AD+ ++DG + + + +G +++ GK V GGID H H F+
Sbjct: 85 ADIGIKDGRIAGIGKAGNPDIMDGVTIIIGPSTEIIAGEGKIVTAGGIDTHIH----FIC 140
Query: 121 SETIDDFFSGQAAALAGGTTMHI 143
+ I+ ALA G T I
Sbjct: 141 PQQIE-------EALASGITTMI 156
>gnl|CDD|236262 PRK08417, PRK08417, dihydroorotase; Provisional.
Length = 386
Score = 35.4 bits (82), Expect = 0.030
Identities = 41/249 (16%), Positives = 81/249 (32%), Gaps = 40/249 (16%)
Query: 75 VEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ--- 131
++DG + + ++ ++LDA GK ++P +D + +D S +
Sbjct: 3 IKDGKITEIGSDLK---GEEILDAKGKTLLPALVD---------LNVSLKNDSLSSKNLK 50
Query: 132 ---AAALAGGTT---MHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVS 185
L GG ++ D I+ + E + M + D +S
Sbjct: 51 SLENECLKGGVGSIVLYPDSTPAIDNEIA--LELINSAQRELPMQIFPSIRALDEDGKLS 108
Query: 186 DEMEVMVKEKGINSFKFFMAYKGSFM---INDELLIEGFKRCKSLGALAMVHAENGDAVF 242
+ I + K + ++ LL + K L E D+ F
Sbjct: 109 N----------IATL-LKKGAKALELSSDLDANLLKVIAQYAKMLDVPIFCRCE--DSSF 155
Query: 243 EGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAK 302
+ M + G E P + E + + LA+F + + ++E + K
Sbjct: 156 DDSGVMND-GELSFELGLPGIPSIAETKEVAKMKELAKFYKNKVLFDTLALPRSLELLDK 214
Query: 303 ARKAGPNFL 311
+ G L
Sbjct: 215 FKSEGEKLL 223
>gnl|CDD|130852 TIGR01792, urease_alph, urease, alpha subunit. This model
describes the urease alpha subunit UreC (designated beta
or B chain, UreB in Helicobacter species). Accessory
proteins for incorporation of the nickel cofactor are
usually found in addition to the urease alpha, beta, and
gamma subunits. The trusted cutoff is set above the
scores of many reported fragments and of a putative
second urease alpha chain in Streptomyces coelicolor
[Central intermediary metabolism, Nitrogen metabolism].
Length = 567
Score = 35.1 bits (81), Expect = 0.054
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 21/83 (25%)
Query: 71 ADVYVEDGIVVA--------VQPNIN--VGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG 120
AD+ +++G +V ++ VG + + GK V GGID H H ++
Sbjct: 84 ADIGIKNGRIVGIGKAGNPDTMDGVDMIVGASTEAISGEGKIVTAGGIDTHVH----YIS 139
Query: 121 SETIDDFFSGQAAALAGGTTMHI 143
+ + AAL G T I
Sbjct: 140 PQQVQ-------AALDNGITTLI 155
>gnl|CDD|183965 PRK13308, ureC, urease subunit alpha; Reviewed.
Length = 569
Score = 34.7 bits (80), Expect = 0.067
Identities = 29/103 (28%), Positives = 34/103 (33%), Gaps = 35/103 (33%)
Query: 71 ADVYVEDGIVVA------------VQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF 118
D+ + DG +V V P + VG V A G PG ID H H
Sbjct: 87 GDIGIRDGRIVGIGKAGNPDIMDGVDPRLVVGPGTDVRPAEGLIATPGAIDVHVH----- 141
Query: 119 MGSETIDDFFSGQAA--ALAGG-TTMHIDFVIPINGSLTAGFE 158
F S Q ALA G TTM + G L
Sbjct: 142 --------FDSAQLVDHALASGITTM-------LGGGLGPTVG 169
>gnl|CDD|184438 PRK13985, ureB, urease subunit beta; Provisional.
Length = 568
Score = 34.5 bits (79), Expect = 0.072
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 17/82 (20%)
Query: 71 ADVYVEDGIVV------------AVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF 118
AD+ ++DG + V+ N++VG + L G V GGID H H F
Sbjct: 83 ADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIH----F 138
Query: 119 MGSETIDD-FFSGQAAALAGGT 139
+ + I F SG + GGT
Sbjct: 139 ISPQQIPTAFASGVTTMIGGGT 160
>gnl|CDD|185390 PRK15493, PRK15493, 5-methylthioadenosine/S-adenosylhomocysteine
deaminase; Provisional.
Length = 435
Score = 34.3 bits (78), Expect = 0.091
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 73 VYVEDGIVVAVQPNINVGDDV--KVLDATGKFVMPGGIDPHTHLAMEFM 119
+ VE+ ++ V D +V+D GK+V+PG ++ HTH+ M +
Sbjct: 25 IIVENDQIIDVNSGEFASDFEVDEVIDMKGKWVLPGLVNTHTHVVMSLL 73
>gnl|CDD|237604 PRK14085, PRK14085, imidazolonepropionase; Provisional.
Length = 382
Score = 33.8 bits (78), Expect = 0.12
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
Query: 71 ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDF--- 127
A V VE G V V P + + +DA G+ V+PG +D H+HL F G + +F
Sbjct: 29 AAVVVEGGRVAWVGPAADAPAADERVDAGGRAVLPGFVDSHSHLV--FAGDRS-AEFAAR 85
Query: 128 FSGQAAALAGG--TTM 141
+G+ + AGG TT+
Sbjct: 86 MAGEPYS-AGGIRTTV 100
>gnl|CDD|181713 PRK09230, PRK09230, cytosine deaminase; Provisional.
Length = 426
Score = 33.5 bits (77), Expect = 0.13
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 68 QQIADVYVEDGIVVAVQPNINVGDDV-KVLDATGKFVMPGGIDPHTHL 114
QI +EDG + A++P + +VLDA G +P I+PH HL
Sbjct: 20 WQIT---IEDGKISAIEPQSEASLEAGEVLDAEGGLAIPPFIEPHIHL 64
>gnl|CDD|165222 PHA02896, PHA02896, A-type inclusion like protein; Provisional.
Length = 616
Score = 33.5 bits (76), Expect = 0.18
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 281 FVNTPLYVVHVMSMD----AMEEIAKARKAGPNFL--NTTIPLCDSCS 322
F+ P Y +H+MS D AME + + GP N+TI + + C+
Sbjct: 165 FIGLPTYYIHLMSADDIIMAMESVGDKPRNGPEEYERNSTIHIKEMCA 212
>gnl|CDD|131030 TIGR01975, isoAsp_dipep, isoaspartyl dipeptidase IadA. The
L-isoaspartyl derivative of Asp arises non-enzymatically
over time as a form of protein damage. In this
isomerization, the connectivity of the polypeptide
changes to pass through the beta-carboxyl of the side
chain. Much but not all of this damage can be repaired
by protein-L-isoaspartate (D-aspartate)
O-methyltransferase. This model describes the
isoaspartyl dipeptidase IadA, apparently one of two such
enzymes in E. coli, an enzyme that degrades isoaspartyl
dipeptides and may unblock degradation of proteins that
cannot be repaired. This model also describes closely
related proteins from other species (e.g. Clostridium
perfringens, Thermoanaerobacter tengcongensis) that we
assume to be equivalent in function. This family shows
homology to dihydroorotases [Protein fate, Degradation
of proteins, peptides, and glycopeptides].
Length = 389
Score = 33.2 bits (76), Expect = 0.19
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV----GDDVKVLDATGKFVMPGGIDPH 111
L+KG V + D+ + + ++A+ I + V+ G +PG ID H
Sbjct: 3 LLKGAEVYAPEYIGKKDILIANDKIIAIADEIPSTKDFVPNCVVVGLEGMIAVPGFIDQH 62
Query: 112 THLA 115
H+
Sbjct: 63 VHII 66
>gnl|CDD|237088 PRK12393, PRK12393, amidohydrolase; Provisional.
Length = 457
Score = 33.1 bits (76), Expect = 0.20
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 71 ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115
D+ + DG + A+ + +V+DAT V PG ++ H HL
Sbjct: 26 PDIRIRDGRIAAIGA-LTPLPGERVIDATDCVVYPGWVNTHHHLF 69
>gnl|CDD|219672 pfam07969, Amidohydro_3, Amidohydrolase family.
Length = 392
Score = 32.5 bits (74), Expect = 0.34
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 102 FVMPGGIDPHTHLA 115
V+PG +DPHTHL
Sbjct: 1 LVLPGFVDPHTHLD 14
>gnl|CDD|214849 smart00841, Elong-fact-P_C, Elongation factor P, C-terminal. These
nucleic acid binding domains are predominantly found in
elongation factor P, where they adopt an OB-fold, with
five beta-strands forming a beta-barrel in a Greek-key
topology.
Length = 57
Score = 29.3 bits (67), Expect = 0.34
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 75 VEDGIVVAVQPNINVGDDVKVLDATGKFV 103
+E G VV V IN GD +KV TG++V
Sbjct: 27 LETGAVVQVPLFINEGDKIKVDTRTGEYV 55
>gnl|CDD|150075 pfam09285, Elong-fact-P_C, Elongation factor P, C-terminal.
Members of this family of nucleic acid binding domains
are predominantly found in elongation factor P, where
they adopt an OB-fold, with five beta-strands forming a
beta-barrel in a Greek-key topology.
Length = 56
Score = 29.3 bits (67), Expect = 0.38
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 57 IKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFV 103
+KG T + +E G V V I G+ +KV TG++V
Sbjct: 12 VKGDTASSGTKPAT----LETGAEVQVPLFIEEGEKIKVDTRTGEYV 54
>gnl|CDD|238620 cd01295, AdeC, Adenine deaminase (AdeC) directly deaminates adenine
to form hypoxanthine. This reaction is part of one of
the adenine salvage pathways, as well as the degradation
pathway. It is important for adenine utilization as a
purine, as well as a nitrogen source in bacteria and
archea.
Length = 422
Score = 31.8 bits (73), Expect = 0.48
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 97 DATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTT 140
DA GK+++PG ID H H+ S F+ A L GTT
Sbjct: 1 DAEGKYIVPGFIDAHLHIES----SMLTPSEFA--KAVLPHGTT 38
>gnl|CDD|183018 PRK11178, PRK11178, uridine phosphorylase; Provisional.
Length = 251
Score = 31.2 bits (71), Expect = 0.54
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 13/66 (19%)
Query: 82 AVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA-MEFMGSETIDDFFSGQA---AALAG 137
A+QP+INVGD VL T + G H A +EF + DF A AA +
Sbjct: 95 AIQPHINVGD---VLVTTASVRLDGA---SLHFAPLEF---PAVADFECTTALVEAAKSI 145
Query: 138 GTTMHI 143
G T H+
Sbjct: 146 GATTHV 151
>gnl|CDD|235873 PRK06846, PRK06846, putative deaminase; Validated.
Length = 410
Score = 31.5 bits (72), Expect = 0.55
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 70 IADVYVEDGIVVAVQPNINVGD-DVKVLDATGKFVMPGGIDPHTHLAMEFMG 120
+ + ++DG +VA++PN V D + DA G ++P + H HL + G
Sbjct: 31 LCTLEIQDGKIVAIRPNKQVPDATLPTYDANGLLMLPAFREMHIHLDKTYYG 82
>gnl|CDD|240220 cd05794, S1_EF-P_repeat_2, S1_EF-P_repeat_2: Translation elongation
factor P (EF-P), S1-like RNA-binding domain, repeat 1.
EF-P stimulates the peptidyltransferase activity in the
prokaryotic 70S ribosome. EF-P enhances the synthesis of
certain dipeptides with N-formylmethionyl-tRNA and
puromycine in vitro. EF-P binds to both the 30S and 50S
ribosomal subunits. EF-P binds near the streptomycine
binding site of the 16S rRNA in the 30S subunit. EF-P
interacts with domains 2 and 5 of the 23S rRNA. The L16
ribosomal protein of the 50S or its N-terminal fragment
are required for EF-P mediated peptide bond synthesis,
whereas L11, L15, and L7/L12 are not required in this
reaction, suggesting that EF-P may function at a
different ribosomal site than most other translation
factors. EF-P is essential for cell viability and is
required for protein synthesis. EF-P is mainly present
in bacteria. The EF-P homologs in archaea and eukaryotes
are the initiation factors aIF5A and eIF5A,
respectively. EF-P has 3 domains (domains I, II, and
III). Domains II and III are S1-like domains. This CD
includes domain III (the second S1 domain of EF_P).
Domains II and III of have structural homology to the
eIF5A domain C, suggesting that domains II and III
evolved by duplication.
Length = 56
Score = 28.6 bits (65), Expect = 0.60
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 57 IKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFV 103
+KG T + + A +E G V V I G+ +KV TG++V
Sbjct: 12 VKGDTASSG--TKPA--TLETGAEVQVPLFIKEGEKIKVDTRTGEYV 54
>gnl|CDD|182201 PRK10027, PRK10027, cryptic adenine deaminase; Provisional.
Length = 588
Score = 31.3 bits (71), Expect = 0.68
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 80 VVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGT 139
+ V ++ +DA G +PG ID H H+ M + + A L G
Sbjct: 59 IAGVGAEYADAPALQRIDARGATAVPGFIDAHLHIESSMMTP------VTFETATLPRGL 112
Query: 140 T 140
T
Sbjct: 113 T 113
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 30.7 bits (69), Expect = 1.3
Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 24/171 (14%)
Query: 33 NLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDD 92
EY + + S +++LIK + V+ + +D V V ++ DD
Sbjct: 143 QNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADE-----SDDDEVTIVSAGVSQLDD 197
Query: 93 VKVLDATGKFVMPGG--IDPHTHLAMEFMGSETIDDFFSGQAA---ALAGGTTMHIDFVI 147
+V++ + G I P EF S DDFF + A +AG + ++ +
Sbjct: 198 GQVIEGKNILIAVGNKPIFPDVK-GKEFTISS--DDFFKIKEAKRIGIAGSGYIAVELIN 254
Query: 148 PINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGIN 198
+N G E+Y + + K+DE + +E+E +K+ IN
Sbjct: 255 VVN---RLGAESYIFARG--------NRLLRKFDETIINELENDMKKNNIN 294
>gnl|CDD|235969 PRK07213, PRK07213, chlorohydrolase; Provisional.
Length = 375
Score = 30.4 bits (69), Expect = 1.5
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 75 VEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115
+EDGI+ ++ G+ V+DA G V+P I+ HTH+
Sbjct: 24 IEDGIIKGFTNEVHEGN---VIDAKG-LVIPPLINAHTHIG 60
>gnl|CDD|238945 cd01987, USP_OKCHK, USP domain is located between the N-terminal
sensor domain and C-terminal catalytic domain of this
Osmosensitive K+ channel histidine kinase family. The
family of KdpD sensor kinase proteins regulates the
kdpFABC operon responsible for potassium transport. The
USP domain is homologous to the universal stress protein
Usp Usp is a small cytoplasmic bacterial protein whose
expression is enhanced when the cell is exposed to
stress agents. Usp enhances the rate of cell survival
during prolonged exposure to such conditions, and may
provide a general "stress endurance" activity.
Length = 124
Score = 28.7 bits (65), Expect = 2.1
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 274 RAIRLAEFVNTPLYVVHV-------MSMDAMEEIAKARK 305
RA RLA+ + P YVV+V +S +A+A +
Sbjct: 18 RAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALR 56
>gnl|CDD|236366 PRK09045, PRK09045, N-ethylammeline chlorohydrolase; Provisional.
Length = 443
Score = 29.5 bits (67), Expect = 2.6
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 62 VVNAHHQQIADVYVEDGIVVAVQPNINVGDD---VKVLDATGKFVMPGGIDPHTHLAMEF 118
VV H V + DG +VA+ P + ++ ++PG I+ HTH AM
Sbjct: 24 VVLEDHA----VAIRDGRIVAILPRAEARARYAAAETVELPDHVLIPGLINAHTHAAMSL 79
Query: 119 M 119
+
Sbjct: 80 L 80
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 29.5 bits (67), Expect = 2.7
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 73 VYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPG 106
V G V P +G VLD G V PG
Sbjct: 340 GTVAKGAVHTGGPRFTIGPRTVVLDEDGNPVEPG 373
>gnl|CDD|234788 PRK00529, PRK00529, elongation factor P; Validated.
Length = 186
Score = 28.9 bits (66), Expect = 2.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 75 VEDGIVVAVQPNINVGDDVKVLDATGKFV 103
+E G VV V IN G+ +KV TG++V
Sbjct: 154 LETGAVVQVPLFINEGEKIKVDTRTGEYV 182
>gnl|CDD|203489 pfam06644, ATP11, ATP11 protein. This family consists of several
eukaryotic ATP11 proteins. In Saccharomyces cerevisiae,
expression of functional F1-ATPase requires two proteins
encoded by the ATP11 and ATP12 genes. Atp11p is a
molecular chaperone of the mitochondrial matrix that
participates in the biogenesis pathway to form F1, the
catalytic unit of the ATP synthase.
Length = 250
Score = 28.9 bits (65), Expect = 3.0
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 9/82 (10%)
Query: 243 EGQKRMIELGITGPEGHA------LSRPPLLEGEATTRAIR-LAEFVNTPLYVVHVMSMD 295
E ++ + TGP A P + + + + L+ ++ + +S +
Sbjct: 32 EKKEFSAKKPPTGPSKQASKFKTLKPPKPADKKKPFDKPFKPLSSILDVEK--IKDLSAE 89
Query: 296 AMEEIAKARKAGPNFLNTTIPL 317
+E I +A A + L IP
Sbjct: 90 EIEFIWRAYHAKKDSLCAVIPA 111
>gnl|CDD|222634 pfam14262, DUF4353, Domain of unknown function (DUF4353). This
family is found in bacteria and archaea, and is
typically between 262 and 279 amino acids in length.
Length = 264
Score = 29.1 bits (66), Expect = 3.1
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 48 GIQSSSKILIKGGTV-VNAHHQQIADVYVEDGIVVAVQPNINVGD-DVKVLD----ATGK 101
GIQ+S+ + I GGT+ + A + ++GI IN G + D A G
Sbjct: 189 GIQASTDLTIDGGTITITA--GGGSADASDEGIEAGGNITINGGTITITSSDDGINAAGN 246
Query: 102 FVMPGG 107
+ GG
Sbjct: 247 ITINGG 252
>gnl|CDD|131371 TIGR02318, phosphono_phnM, phosphonate metabolism protein PhnM.
This family consists of proteins from in the PhnM
family. PhnM is a a protein associated with phosphonate
utilization in a number of bacterial species. In
Pseudomonas stutzeri WM88, a protein that is part of a
system for the oxidation of phosphites (another form of
reduced phosphorous compound) scores between trusted and
noise cutoffs [Energy metabolism, Other].
Length = 376
Score = 29.2 bits (66), Expect = 3.4
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 57 IKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
+ +V V +EDG + + + D G ++PG ID HT
Sbjct: 2 LSNARLVLEDEVVEGSVVIEDGAIADIGEGPVALAEAI--DGEGDLLLPGLIDLHT 55
>gnl|CDD|201816 pfam01472, PUA, PUA domain. The PUA domain named after
Pseudouridine synthase and Archaeosine transglycosylase,
was detected in archaeal and eukaryotic pseudouridine
synthases, archaeal archaeosine synthases, a family of
predicted ATPases that may be involved in RNA
modification, a family of predicted archaeal and
bacterial rRNA methylases. Additionally, the PUA domain
was detected in a family of eukaryotic proteins that
also contain a domain homologous to the translation
initiation factor eIF1/SUI1; these proteins may comprise
a novel type of translation factors. Unexpectedly, the
PUA domain was detected also in bacterial and yeast
glutamate kinases; this is compatible with the
demonstrated role of these enzymes in the regulation of
the expression of other genes. It is predicted that the
PUA domain is an RNA binding domain.
Length = 74
Score = 27.1 bits (61), Expect = 3.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 80 VVAVQPNINVGDDVKVLDATGKFV 103
VV V + GD+V V+ G+ V
Sbjct: 24 VVEVDGDFRRGDEVVVVTEKGELV 47
>gnl|CDD|237621 PRK14139, PRK14139, heat shock protein GrpE; Provisional.
Length = 185
Score = 28.4 bits (64), Expect = 3.7
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 296 AMEEIAKARK-AGPNFLNTTIPLCDS 320
A E++AKA K A +F + +P+ DS
Sbjct: 69 AQEDVAKAHKFAIESFAESLLPVKDS 94
>gnl|CDD|232881 TIGR00221, nagA, N-acetylglucosamine-6-phosphate deacetylase.
[Central intermediary metabolism, Amino sugars].
Length = 380
Score = 29.0 bits (65), Expect = 3.9
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 54 KILIKGGTVVNAHHQQIADVYV--EDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
L+K +V + + I + V DG + V + ++K +D G + PG ID H
Sbjct: 4 SYLLKDIAIVTGN-EVIDNGAVGINDGKISTVSTEAELEPEIKEIDLPGNVLTPGFIDIH 62
Query: 112 TH 113
H
Sbjct: 63 IH 64
>gnl|CDD|213496 TIGR00038, efp, translation elongation factor P. function:
involved in peptide bond synthesis. stimulate efficient
translation and peptide-bond synthesis on native or
reconstituted 70S ribosomes in vitro. probably functions
indirectly by altering the affinity of the ribosome for
aminoacyl-tRNA, thus increasing their reactivity as
acceptors for peptidyl transferase (by similarity). The
trusted cutoff of this model is set high enough to
exclude members of TIGR02178, an EFP-like protein of
certain Gammaproteobacteria [Protein synthesis,
Translation factors].
Length = 184
Score = 28.2 bits (64), Expect = 4.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 75 VEDGIVVAVQPNINVGDDVKVLDATGKFV 103
+E G VV V I G+ +KV TG++V
Sbjct: 153 LETGAVVQVPLFIEEGEKIKVDTRTGEYV 181
>gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional.
Length = 1490
Score = 28.7 bits (64), Expect = 5.0
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 14/88 (15%)
Query: 59 GGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDV------KVLDATGKFVMPGGIDPHT 112
G +V QQ+ E G+V+ +Q +I V D+V + L A + P +
Sbjct: 1002 GIAIVEEQLQQLR----EQGLVMNLQQDIWVSDEVFRRLRLRSLQAAREATRPVAATTYA 1057
Query: 113 HLAMEFMGSETIDDFFSGQAAALAGGTT 140
L +E G + + + AL T+
Sbjct: 1058 RLLLERQG--VLPA--TDGSPALFASTS 1081
>gnl|CDD|233936 TIGR02578, cas_TM1811_Csm1, CRISPR-associated protein Cas10/Csm1,
subtype III-A/MTUBE. The family is designated Csm2, for
CRISPR/Cas Subtype Mtube Protein 2. A typical example is
TM1811 from Thermotoga maritima. CRISPR are Clustered
Regularly Interspaced Short Palindromic Repeats. This
protein family belongs to a conserved gene cluster
regularly found near CRISPR repeats [Mobile and
extrachromosomal element functions, Other].
Length = 648
Score = 28.5 bits (64), Expect = 5.3
Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 11/78 (14%)
Query: 177 ITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGF--KRCKSLGALAMVH 234
TK ++ E + + K K + S N + F C G A
Sbjct: 358 ATKRKKL----HEKLERAK-----KRRFSELLSTAGNPKSGFYSFGNNTCDICGRAASAR 408
Query: 235 AENGDAVFEGQKRMIELG 252
A+ + LG
Sbjct: 409 EIEDLALCDLCAEEYNLG 426
>gnl|CDD|180657 PRK06687, PRK06687, chlorohydrolase; Validated.
Length = 419
Score = 28.4 bits (63), Expect = 5.4
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 75 VEDGIVVAVQPNIN--VGDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119
V+D +V V + + +++D G ++MPG ++ HTH AM +
Sbjct: 26 VKDSQIVYVGQDKPAFLEQAEQIIDYQGAWIMPGLVNCHTHSAMTGL 72
>gnl|CDD|219128 pfam06666, DUF1173, Protein of unknown function (DUF1173). This
family contains a group of hypothetical bacterial
proteins that contain three conserved cysteine residues
towards the N-terminal. The function of these proteins
is unknown.
Length = 385
Score = 28.1 bits (63), Expect = 6.5
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 252 GITGPEGHALSRPPLLEG--EATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKA 306
G+ G + R LLE + + + L++ L+V S +A +EIA+ R+A
Sbjct: 150 GMAGKRNWGVVRKYLLEAAEQKSAKGKPLSDR----LFVPEPFSPEAKDEIAQRRRA 202
>gnl|CDD|223949 COG1018, Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases)
family 1 [Energy production and conversion].
Length = 266
Score = 28.0 bits (63), Expect = 6.7
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 66 HHQQIADVYVEDGIVVA--VQPNINVGDDVKVLDATGKFVMPGGIDPH 111
+I+ V EDG + + ++ VGD ++V G FV+ +
Sbjct: 66 SLYRIS-VKREDGGGGSNWLHDHLKVGDTLEVSAPAGDFVLDDLPERK 112
>gnl|CDD|183181 PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR;
Provisional.
Length = 224
Score = 27.6 bits (61), Expect = 9.5
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 257 EGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKAR 304
+AL PL E + A RL VN Y V MS + +I AR
Sbjct: 38 SRYALGVGPLREALSQLVAERLVTVVNQKGYRVASMSEQELLDIFDAR 85
>gnl|CDD|219422 pfam07474, G2F, G2F domain. Nidogen, an invariant component of
basement membranes, is a multifunctional protein that
interacts with most other major basement membrane
proteins. The G2 fragment or (G"F domain) contains
binding sites for collagen IV and perlecan. The
structure is composed of an 11-stranded beta-barrel with
a central helix. This domain is structurally related to
that of green fluorescent protein pfam01353. A large
surface patch on the beta-barrel is conserved in all
metazoan nidogens.
Length = 193
Score = 27.1 bits (60), Expect = 9.6
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 8/38 (21%)
Query: 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHID 144
G+D +L I SG+ + G + I
Sbjct: 110 GLDSDGYL--------LIKTVVSGRVPQIPSGAEVTIK 139
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.402
Gapped
Lambda K H
0.267 0.0861 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,993,528
Number of extensions: 1671443
Number of successful extensions: 1756
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1671
Number of HSP's successfully gapped: 132
Length of query: 331
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 234
Effective length of database: 6,635,264
Effective search space: 1552651776
Effective search space used: 1552651776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.3 bits)