RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 020079
(331 letters)
>3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A
{Brevibacillus agri} PDB: 1yny_A 1k1d_A*
Length = 461
Score = 368 bits (946), Expect = e-126
Identities = 117/258 (45%), Positives = 158/258 (61%), Gaps = 3/258 (1%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
K I+ GTVV A ADV ++ VVA+ ++ D +V+DATG +++PGGIDPHTH
Sbjct: 2 KKWIRNGTVVTASDTYQADVLIDGEKVVAIGSDLQATDA-EVIDATGYYLLPGGIDPHTH 60
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDY 171
L M F G+ T D+FF+G AA GGTT +DF + G SL + + +KA+ + +DY
Sbjct: 61 LDMPFGGTVTSDNFFTGTKAAAFGGTTSIVDFCLTSKGESLHSAIATWHEKARGKAVIDY 120
Query: 172 GFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALA 231
GFH+ ++ ++ V +E+E +V +GI S K FMAYK M +DE L + R K LGAL
Sbjct: 121 GFHLMVSDANDHVLEELESVVNNEGITSLKVFMAYKNVLMADDETLFKTLIRAKELGALV 180
Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
VHAENGD + K+ + G T P HA +RPP EGEAT RAI L + LYVVHV
Sbjct: 181 QVHAENGDVLDYLTKQALAEGNTDPIYHAYTRPPEAEGEATGRAIALTALADAQLYVVHV 240
Query: 292 MSMDAMEEIAKARKAGPN 309
DA+ IA+AR+ G N
Sbjct: 241 SCADAVRRIAEAREKGWN 258
>3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A
{Sinorhizobium meliloti}
Length = 490
Score = 368 bits (947), Expect = e-126
Identities = 131/264 (49%), Positives = 170/264 (64%), Gaps = 4/264 (1%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
+IKGGT+V A ADV VE G +V + PN+ + LDATG +VMPGGIDPHTH
Sbjct: 2 STVIKGGTIVTADLTYKADVKVEGGRIVEIGPNL---SGAETLDATGCYVMPGGIDPHTH 58
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYG 172
L M FMG+ + DDF SG AALAGGTTM +DF +P G SL ++ K+ + DY
Sbjct: 59 LEMPFMGTYSSDDFESGTRAALAGGTTMVVDFALPSPGQSLLEALTMWDNKSTRANCDYS 118
Query: 173 FHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
FHMAIT W E V +EME +VK+KGIN+FK FMAYKG+ M++D+ + F+RC +LGAL +
Sbjct: 119 FHMAITWWGEQVFNEMETIVKDKGINTFKHFMAYKGALMVDDDEMFSSFQRCAALGALPL 178
Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
VHAENGD V + Q +++ G +GPE HA SRP +EGEA RAI +A+ P+Y+VH
Sbjct: 179 VHAENGDVVAQLQAKLLAEGNSGPEAHAYSRPAEVEGEAANRAIMIADMAGCPVYIVHTS 238
Query: 293 SMDAMEEIAKARKAGPNFLNTTIP 316
A E I +AR G +
Sbjct: 239 CEQAHEAIRRARAKGMRVFGEPLI 262
>1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET:
KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB:
1gkq_A*
Length = 458
Score = 366 bits (941), Expect = e-125
Identities = 91/255 (35%), Positives = 139/255 (54%), Gaps = 3/255 (1%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LIK G ++ A + AD+Y E + + N+ +V+DATGK+V PG IDPH H+
Sbjct: 2 LLIKNGEIITADSRYKADIYAEGETITRIGQNLEAPPGTEVIDATGKYVFPGFIDPHVHI 61
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYG 172
+ FM + D +G AAL GGTT +I+ P G++ ++ KA+ NS DY
Sbjct: 62 YLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNSYCDYT 121
Query: 173 FHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
FHMA++K+DE ++ +V + GI+SFK F++YK F ++D + + + K LG +
Sbjct: 122 FHMAVSKFDEKTEGQLREIVAD-GISSFKIFLSYKNFFGVDDGEMYQTLRLAKELGVIVT 180
Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
H EN + V Q++++ G TGPE H SRP +E E T R E YVVH+
Sbjct: 181 AHCENAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHLS 240
Query: 293 SMDAMEEIAKARKAG 307
A++ A+ G
Sbjct: 241 CKPALDAAMAAKARG 255
>2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis,
phosphoprotein, differentiation, CRMP, cytoplasm, TIM
barrel, polymorphism, axonal pathfinding; 1.9A {Homo
sapiens} PDB: 2gse_A 1kcx_A
Length = 501
Score = 362 bits (931), Expect = e-123
Identities = 123/268 (45%), Positives = 168/268 (62%), Gaps = 2/268 (0%)
Query: 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+S ++LIKGG +VN AD+Y+EDG++ + N+ V VK ++A + V+PGGID
Sbjct: 24 TSDRLLIKGGKIVNDDQSFYADIYMEDGLIKQIGENLIVPGGVKTIEAHSRMVIPGGIDV 83
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSC 168
HT M G + DDFF G AALAGGTTM ID V+P G SL A F+ + + A SC
Sbjct: 84 HTRFQMPDQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGTSLLAAFDQWREWADSKSC 143
Query: 169 MDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228
DY H+ I++W + + +EME +VK+ G+NSF +MA+K F + D + E + +G
Sbjct: 144 CDYSLHVDISEWHKGIQEEMEALVKDHGVNSFLVYMAFKDRFQLTDCQIYEVLSVIRDIG 203
Query: 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288
A+A VHAENGD + E Q+R+++LGITGPEGH LSRP +E EA RAI +A N PLY+
Sbjct: 204 AIAQVHAENGDIIAEEQQRILDLGITGPEGHVLSRPEEVEAEAVNRAITIANQTNCPLYI 263
Query: 289 VHVMSMDAMEEIAKARKAGPNFLNTTIP 316
VMS + E IA+ARK G I
Sbjct: 264 TKVMSKSSAEVIAQARKKGTVVYGEPIT 291
>1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia
pickettii} SCOP: b.92.1.3 c.1.9.6
Length = 457
Score = 359 bits (924), Expect = e-123
Identities = 101/256 (39%), Positives = 150/256 (58%), Gaps = 5/256 (1%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
I+IK GT+V A AD+ ++DG + + + + + +DA G++V PGGID HTH
Sbjct: 2 DIIIKNGTIVTADGISRADLGIKDGKITQIGGALGPAE--RTIDAAGRYVFPGGIDVHTH 59
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDY 171
+ +++ D F + AA GGTT +DF G SL ++ A S +DY
Sbjct: 60 VETVSFNTQSADTFATATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAGGKSAIDY 119
Query: 172 GFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALA 231
G+H+ + + V +E+EV+ + GI SFK FMAY+G MI+D L++ + G+L
Sbjct: 120 GYHIIVLDPTDSVIEELEVLP-DLGITSFKVFMAYRGMNMIDDVTLLKTLDKAVKTGSLV 178
Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
MVHAENGDA + + + G T P HALSRPP +E EAT RA+ LAE VN P+Y+VHV
Sbjct: 179 MVHAENGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAEATARALALAEIVNAPIYIVHV 238
Query: 292 MSMDAMEEIAKARKAG 307
+++EE+ +A+ G
Sbjct: 239 TCEESLEEVMRAKSRG 254
>2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation,
dihydropyrimi amidohydrolase, nucleotide metabolism,
DPYS, dhpase, hydrolase; 2.80A {Homo sapiens}
Length = 541
Score = 359 bits (924), Expect = e-122
Identities = 144/294 (48%), Positives = 186/294 (63%), Gaps = 9/294 (3%)
Query: 32 NNLFCDAGSEYGGPQCGIQSSSK---ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN 88
++ +G + G QS + +LI+GG VVN ++ADV VEDG+V A+ ++
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMAAPSRLLIRGGRVVNDDFSEVADVLVEDGVVRALGHDLL 62
Query: 89 ----VGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHID 144
++VLDA GK V+PGGID HTH+ FMGS +IDDF G AAL+GGTTM ID
Sbjct: 63 PPGGAPAGLRVLDAAGKLVLPGGIDTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIID 122
Query: 145 FVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKF 202
F IP G SL FE + A C DY H+A+T W + V +EM+++V++KG+NSFK
Sbjct: 123 FAIPQKGGSLIEAFETWRSWADPKVCCDYSLHVAVTWWSDQVKEEMKILVQDKGVNSFKM 182
Query: 203 FMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS 262
FMAYK +M+ D L E F RCK +GA+A VHAENGD + EG K+M+ LGITGPEGH L
Sbjct: 183 FMAYKDLYMVTDLELYEAFSRCKEIGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELC 242
Query: 263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFLNTTIP 316
RP +E EAT RAI +A VN PLY+VHVMS A + IA AR+ G I
Sbjct: 243 RPEAVEAEATLRAITIASAVNCPLYIVHVMSKSAAKVIADARRDGKVVYGEPIA 296
>2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel,
beta-sandwich; HET: KCX; 2.05A {Dictyostelium
discoideum} SCOP: b.92.1.3 c.1.9.6
Length = 521
Score = 357 bits (919), Expect = e-121
Identities = 146/268 (54%), Positives = 183/268 (68%), Gaps = 2/268 (0%)
Query: 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+ ILIK GTVVN +DV VE+GI+ + NI + +KV+DAT K ++PGGID
Sbjct: 6 QTGTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLPGGIDT 65
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSC 168
HTH + FMG+ ++DDF G AA+AGGTT IDFVIP G SL ++ ++K A
Sbjct: 66 HTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKVN 125
Query: 169 MDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228
DY H+AIT W E VS EME++VKE+G+NSFK FMAYK SFM+ D+ + FKRCK LG
Sbjct: 126 CDYSLHVAITWWSEQVSREMEILVKERGVNSFKCFMAYKNSFMVTDQEMYHIFKRCKELG 185
Query: 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288
A+A VHAENGD VFEGQK+M+E+GITGPEGH LSRP LE EAT RAI +A+ V TP+Y+
Sbjct: 186 AIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSVCTPVYI 245
Query: 289 VHVMSMDAMEEIAKARKAGPNFLNTTIP 316
VHV S+ A + I K RK G I
Sbjct: 246 VHVQSIGAADVICKHRKEGVRVYGEPIA 273
>1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase;
hydrolase, dihydropyrimidinase, cyclic amidase; HET:
KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3
c.1.9.6
Length = 458
Score = 335 bits (861), Expect = e-113
Identities = 70/260 (26%), Positives = 118/260 (45%), Gaps = 10/260 (3%)
Query: 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
+++K +V++ AD+ V+DG V A+ + + + + +DA GKFVMPG +D H
Sbjct: 2 FDVIVKNCRLVSSDGITEADILVKDGKVAAISADTSDVEASRTIDAGGKFVMPGVVDEHV 61
Query: 113 HLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMD 170
H+ ++ F +A GG T I+ I + F +K+A +D
Sbjct: 62 HI-IDMDLKNRYGRFELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQRLKVD 120
Query: 171 YGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM---INDELLIEGFKRCKSL 227
+ + + E+ M + G FK MA M ++D L E F+ +
Sbjct: 121 FALYGGGVPGNL---PEIRKMH-DAGAVGFKSMMAASVPGMFDAVSDGELFEIFQEIAAC 176
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
G++ +VHAEN + QK++ G + S+P E EA RA+ L + L
Sbjct: 177 GSVIVVHAENETIIQALQKQIKAAGGKDMAAYEASQPVFQENEAIQRALLLQKEAGCRLI 236
Query: 288 VVHVMSMDAMEEIAKARKAG 307
V+HV + D +E I +A+ G
Sbjct: 237 VLHVSNPDGVELIHQAQSEG 256
>2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase;
HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3
c.1.9.6 PDB: 2fvk_A* 2fvm_A*
Length = 559
Score = 326 bits (837), Expect = e-108
Identities = 81/268 (30%), Positives = 131/268 (48%), Gaps = 16/268 (5%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++IK G + A A++ V +G V + +I+ +V+DA G F+ PGGID H H+
Sbjct: 5 LIIKNGIICTASDIYAAEIAVNNGKVQLIAASIDPSLGSEVIDAEGAFITPGGIDAHVHV 64
Query: 115 AMEF-MGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEA------YEKKAKN 166
+ + +D +A+AGGTT + F ++ + E +
Sbjct: 65 DEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQT 124
Query: 167 SCMDYGFHMAITKWDEVVSDEMEVM-------VKEKGINSFKFFMAYKGSFMINDELLIE 219
DYG H+ + + ++ + E++ + G++S K FM Y G I+D ++
Sbjct: 125 LYCDYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPG-LQISDYDIMS 183
Query: 220 GFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLA 279
+ G M+HAENGD V + + E G+T H +SRP ++EGEAT RAI LA
Sbjct: 184 AMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLTDAYYHGVSRPSIVEGEATNRAITLA 243
Query: 280 EFVNTPLYVVHVMSMDAMEEIAKARKAG 307
++TP+ VHV S A E I +A+ G
Sbjct: 244 TTMDTPILFVHVSSPQAAEVIKQAQTKG 271
>3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain,
hydrolase, metal-binding, purine metabolism, zinc; HET:
KCX; 2.10A {Escherichia coli}
Length = 473
Score = 269 bits (690), Expect = 2e-87
Identities = 70/263 (26%), Positives = 117/263 (44%), Gaps = 18/263 (6%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++IK GTV+ + ++ D+ V+ G + A+ ++ +V+DA+G V PG +D HTH+
Sbjct: 25 LIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAK--EVMDASGLVVSPGMVDAHTHI 82
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLT--AGFEAYEKKAKNSCM-DY 171
+ G + + +G AA GG T I+ + + A E AK D
Sbjct: 83 SE--PGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDA 140
Query: 172 GFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM-------INDELLIEGFKRC 224
+ ++ D + + + G+ FK F+A G +ND +G ++
Sbjct: 141 AQLGGLVSYNI---DRLHELDEV-GVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKL 196
Query: 225 KSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT 284
LG +VH EN E + G + SRP E EA R + LA+
Sbjct: 197 GELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGC 256
Query: 285 PLYVVHVMSMDAMEEIAKARKAG 307
L+V HV S + +EE+ +AR+ G
Sbjct: 257 RLHVCHVSSPEGVEEVTRARQEG 279
>3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure
initiative, PSI-2, NEW YORK structural genomix research
CON nysgxrc; 2.60A {Bacillus halodurans}
Length = 448
Score = 267 bits (686), Expect = 3e-87
Identities = 72/262 (27%), Positives = 121/262 (46%), Gaps = 13/262 (4%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGGIDPHTH 113
++I+ TVV ADV + +GIV A+ ++ DD +D TG + PG +D H H
Sbjct: 8 LIIRSSTVVTETTTYRADVAIRNGIVSAITEPGSISSDDGPAIDGTGLHLFPGMVDVHVH 67
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLT--AGFEAYEKKAKNSCM-D 170
G + F SG + AGG T + D + N + + A + D
Sbjct: 68 FNE--PGRTEWEGFASGSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSLVD 125
Query: 171 YGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS---FMINDELLIEGFKRCKSL 227
Y F + + D ++ + G+ FK FM+ G+ +DE L++G K+ +L
Sbjct: 126 YRFWGGLVPGNI---DHLQDLHDG-GVIGFKAFMSECGTDDFQFSHDETLLKGMKKIAAL 181
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
G++ VHAE+ + V IE + ++ +RP + E EA R +R A+ P++
Sbjct: 182 GSILAVHAESNEMVNALTTIAIEEQRLTVKDYSEARPIVSELEAVERILRFAQLTCCPIH 241
Query: 288 VVHVMSMDAMEEIAKARKAGPN 309
+ HV S ++ I +A+ G N
Sbjct: 242 ICHVSSRKVLKRIKQAKGEGVN 263
>2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI,
protein structure initiative, MID center for structural
genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas
gingivalis}
Length = 452
Score = 155 bits (395), Expect = 5e-44
Identities = 50/263 (19%), Positives = 96/263 (36%), Gaps = 19/263 (7%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDV----KVLDATGKFVMPGGID 109
KIL++ + N V ++ + + DD +V++ +G + PG ID
Sbjct: 5 KILLRNALITNEGKTFPGSVMIDGAFISRIIEGELPADDNLSADEVIECSGLRLFPGCID 64
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDF--VIPINGSLTAGFEAYEKKAKN- 166
H E G S AA+AGG T +D P + +
Sbjct: 65 DQVHF-REP-GLTHKATIASESRAAVAGGVTSFMDMPNTNPPTTMWER-LLEKRQIGADT 121
Query: 167 SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY-KGSFMINDELLIEGFKRCK 225
+ +YGF T D + DE++ + + + K F+ G+ +++++ +E K
Sbjct: 122 AWANYGFFFGGTN-DNI--DEIKRV-DKHLVPGLKLFLGSSTGNMLVDNKETLE--KIFG 175
Query: 226 SLGALAMVHAENGDAVFEGQKRMIELGIT--GPEGHALSRPPLLEGEATTRAIRLAEFVN 283
L H E + + ++ H L R ++ A+ LAE +N
Sbjct: 176 ECDLLIATHCEKEEIIRANKEHYKAKYGNDLDIHFHPLIRSEEACYRSSAEAVELAERMN 235
Query: 284 TPLYVVHVMSMDAMEEIAKARKA 306
L+++H+ + +
Sbjct: 236 ARLHILHLSTEKELSLFRNDIPT 258
>3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding,
pyrimidine biosynthesis, structural genomics; 2.00A
{Staphylococcus aureus subsp}
Length = 424
Score = 106 bits (266), Expect = 5e-26
Identities = 66/284 (23%), Positives = 105/284 (36%), Gaps = 69/284 (24%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
LIK G V+ Q AD+ ++ ++ + P I + V ++DA G FV PG +D H HL
Sbjct: 2 KLIKNGKVLQNGELQQADILIDGKVIKQIAPAIEPSNGVDIIDAKGHFVSPGFVDVHVHL 61
Query: 115 AMEFMGSETIDDFFSGQAAALAGG-TTMH--------------IDFVI-------PIN-- 150
E G E + +G AA GG TT+ + + +
Sbjct: 62 R-E-PGGEYKETIETGTKAAARGGFTTVCPMPNTRPVPDSVEHFEALQKLIDDNAQVRVL 119
Query: 151 --GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKG 208
S+T G + + + ++G +F G
Sbjct: 120 PYASITTRQL-------------GKELV----------DFPAL-VKEGAFAF----TDDG 151
Query: 209 SFMINDELLIEGFKRCKSLGALAMVHAE-----NGDAVFEGQKRMIELGITGPEGHALSR 263
+ ++ EG + + H E G A+ EG KR ELGI G
Sbjct: 152 VGVQTASMMYEGMIEAAKVNKAIVAHCEDNSLIYGGAMHEG-KRSKELGIPG-------I 203
Query: 264 PPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAG 307
P + E R + LAE +V HV + +++ I A++AG
Sbjct: 204 PNICESVQIARDVLLAEAAGCHYHVCHVSTKESVRVIRDAKRAG 247
>3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis}
Length = 428
Score = 100 bits (251), Expect = 7e-24
Identities = 69/286 (24%), Positives = 106/286 (37%), Gaps = 71/286 (24%)
Query: 54 KILIKGGTVVN-AHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
L K G +N D+ V+DG + V NI D+ +V+D GK + PG +D H
Sbjct: 2 NYLFKNGRYMNEEGKIVATDLLVQDGKIAKVAENIT-ADNAEVIDVNGKLIAPGLVDVHV 60
Query: 113 HLAMEFMGSETIDDFFSGQAAALAGG-TTMH--------------IDFVI-------PIN 150
HL E G E + +G AA GG TT+ ++ + +N
Sbjct: 61 HLR-E-PGGEHKETIETGTLAAAKGGFTTICAMPNTRPVPDCREHMEDLQNRIKEKAHVN 118
Query: 151 ----GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206
G++T G M + E + KE G +F
Sbjct: 119 VLPYGAITVRQA-------------GSEMT----------DFETL-KELGAFAF----TD 150
Query: 207 KGSFMINDELLIEGFKRCKSLGALAMVHAE-----NGDAVFEGQKRMIELGITGPEGHAL 261
G + + +++ KR L + H E N V EG K + G+ G
Sbjct: 151 DGVGVQDASMMLAAMKRAAKLNMAVVAHCEENTLINKGCVHEG-KFSEKHGLNG------ 203
Query: 262 SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAG 307
P + E R I LAE + +V HV + ++ I A++AG
Sbjct: 204 -IPSVCESVHIARDILLAEAADCHYHVCHVSTKGSVRVIRDAKRAG 248
>1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A
{Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB:
1e9z_B* 3qga_C* 3qgk_C*
Length = 569
Score = 100 bits (250), Expect = 1e-23
Identities = 43/283 (15%), Positives = 80/283 (28%), Gaps = 29/283 (10%)
Query: 43 GGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVA------------VQPNINVG 90
+ ++I +V+ AD+ ++DG + V+ N++VG
Sbjct: 56 SQSNNPSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVG 115
Query: 91 DDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPIN 150
+ L G V GGID H H + F SG + GGT
Sbjct: 116 PATEALAGEGLIVTAGGIDTHIHFISP---QQIPTAFASGVTTMIGGGTGPADGTNATTI 172
Query: 151 GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSF 210
+ + A+ M+ GF ++ + E G FK + +
Sbjct: 173 TPGRRNLKWMLRAAEEYSMNLGFLAKGNASNDASLADQI----EAGAIGFKIHEDWGTTP 228
Query: 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIEL-GITGPEGHALS-----RP 264
+ L +H + + + M + G T H P
Sbjct: 229 SAINHAL----DVADKYDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAP 284
Query: 265 PLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAG 307
+++ + + P V M + +
Sbjct: 285 DIIKVAGEHNILPASTNPTIPFTVNTEAEHMDMLMVCHHKDKS 327
>1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine;
1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB:
1xrf_A 3d6n_A*
Length = 467
Score = 98.8 bits (247), Expect = 3e-23
Identities = 63/288 (21%), Positives = 112/288 (38%), Gaps = 73/288 (25%)
Query: 53 SKILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
K+++K G V++ D+ VE+G + + NI + +++DA G V PG ID
Sbjct: 47 LKLIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNIL-VPEAEIIDAKGLIVCPGFIDI 105
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGG-TTMH--------------IDFVI-------- 147
H HL + G +D SG A+AGG TT+ +++++
Sbjct: 106 HVHLR-D-PGQTYKEDIESGSRCAVAGGFTTIVCMPNTNPPIDNTTVVNYILQKSKSVGL 163
Query: 148 ----PINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFF 203
P G++T G + G +A + + KE G +F
Sbjct: 164 CRVLPT-GTITKGRK-------------GKEIA----------DFYSL-KEAGCVAF--- 195
Query: 204 MAYKGSFMINDELLIEGFKRCKSLGALAMVHAE----NGDAVFEGQKRMIELGITGPEGH 259
GS +++ ++ + + LG M H E + EG + LG++
Sbjct: 196 -TDDGSPVMDSSVMRKALELASQLGVPIMDHCEDDKLAYGVINEG-EVSALLGLSS---- 249
Query: 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAG 307
R P E R LA+ +++ HV + ++E I ++ G
Sbjct: 250 ---RAPEAEEIQIARDGILAQRTGGHVHIQHVSTKLSLEIIEFFKEKG 294
>2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex,
amidohydrolase, structural genomics, PSI, protein
structure initiative; HET: KCX ADE; 2.30A {Enterococcus
faecalis} SCOP: b.92.1.8 c.1.9.14
Length = 379
Score = 92.5 bits (229), Expect = 2e-21
Identities = 37/266 (13%), Positives = 80/266 (30%), Gaps = 20/266 (7%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LIK G VN ++ +++ + AV I+ + G +V G ID H H
Sbjct: 7 LLIKNGQTVNG---MPVEIAIKEKKIAAVAATISGSAKETIHLEPGTYVSAGWIDDHVHC 63
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKN--SCMDYG 172
F D+ + G T ID ++ ++ ++ N ++
Sbjct: 64 ---FEKMALYYDYPD--EIGVKKGVTTVIDAGTTGAENIHEFYDLAQQAKTNVFGLVNIS 118
Query: 173 FHMAITKWDEVVSDEMEVMVKEK-------GINSFKFFMAYKGSFMINDELLIEGFKRCK 225
+ + + +++ + +K + K M+ L + +
Sbjct: 119 KWGIVAQDELADLSKVQASLVKKAIQELPDFVVGIKARMSRTVIGDNGITPLELAKQIQQ 178
Query: 226 SLGALA-MVHAENGDAVFEGQKRMIELG-ITGPEGHALSRPPLLEGEATTR-AIRLAEFV 282
+ MVH + + ++E G + + L + + A
Sbjct: 179 ENQEIPLMVHIGSAPPHLDEILALMEKGDVLTHCFNGKENGILDQATDKIKDFAWQAYNK 238
Query: 283 NTPLYVVHVMSMDAMEEIAKARKAGP 308
+ H A + G
Sbjct: 239 GVVFDIGHGTDSFNFHVAETALREGM 264
>4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel,
acetohydroxamic acid, metalloenzyme, hydrolase; HET:
KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1
c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C*
Length = 570
Score = 92.4 bits (229), Expect = 7e-21
Identities = 43/257 (16%), Positives = 71/257 (27%), Gaps = 45/257 (17%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVA------------VQPNINVGDDVKVLDATGKF 102
+L+ +++ AD+ V+DG +V V PN+ VG +V+ A GK
Sbjct: 69 LLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKI 128
Query: 103 VMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGG-TTMHIDFVIPINGSLTAG----- 156
V GGID H H ALA G TT+ P GS
Sbjct: 129 VTAGGIDTHVHFINP-----------DQVDVALANGITTLFGGGTGPAEGSKATTVTPGP 177
Query: 157 --FEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMIND 214
E K + ++ G E + G K +
Sbjct: 178 WNIEKMLKSTEGLPINVGILGKGHGSSIAPIMEQ----IDAGAAGLKIHEDWG----ATP 229
Query: 215 ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTR 274
+ +H++ + + + + +EG
Sbjct: 230 ASIDRSLTVADEADVQVAIHSDTLNEAGFLEDTL------RAINGRVIHSFHVEGAGGGH 283
Query: 275 AIRLAEFVNTPLYVVHV 291
A + P +
Sbjct: 284 APDIMAMAGHPNVLPSS 300
>2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding,
pyrimidine biosynthesis, structural genomics, NPPSFA;
2.42A {Thermus thermophilus}
Length = 426
Score = 88.0 bits (219), Expect = 1e-19
Identities = 64/292 (21%), Positives = 106/292 (36%), Gaps = 82/292 (28%)
Query: 55 ILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
ILI+ +V+A + ADV + +G +++++ G+ +V+D TG F+ PG +D H H
Sbjct: 2 ILIRNVRLVDARGERGPADVLIGEGRILSLEG----GEAKQVVDGTGCFLAPGFLDLHAH 57
Query: 114 LAMEFMGSETIDDFFSGQAAALAGG-TTMH--------------IDFVI----------- 147
L E G E +D FSG AA+ GG T + + +
Sbjct: 58 LR-E-PGEEVKEDLFSGLLAAVRGGYTDLVSMPNTKPPVDTPEAVRALKEKAKALGLARL 115
Query: 148 -PINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206
P +LT E G + ++ +E G
Sbjct: 116 HPA-AALTEKQE-------------GKTLT----------PAGLL-REAGAVLL----TD 146
Query: 207 KGSFMINDELLIEGFKRCKSLGALAMVHAE-----NGDAVFEGQKRMIELGITGPEGHAL 261
G + +L G LG VHAE + +G LG+ G
Sbjct: 147 DGRTNEDAGVLAAGLLMAAPLGLPVAVHAEDAGLRRNGVMNDG-PLADLLGLPG------ 199
Query: 262 SRPPLLEGEATTRAIRLAEFVNTP------LYVVHVMSMDAMEEIAKARKAG 307
PP E R + + + L+V H+ + +E + +A++AG
Sbjct: 200 -NPPEAEAARIARDLEVLRYALRRSPATPRLHVQHLSTKRGLELVREAKRAG 250
>2vun_A Enamidase; nicotinate degradation, binuclear metal center,
amidohydrolases, stereospecificity, hydrolase; 1.89A
{Eubacterium barkeri}
Length = 386
Score = 80.8 bits (199), Expect = 3e-17
Identities = 46/281 (16%), Positives = 87/281 (30%), Gaps = 26/281 (9%)
Query: 53 SKILIK-GGTVVNAHHQ----QIADVYVEDGIVVAVQP--NINVGDDVKVLDATGKFVMP 105
SK +IK G +V+ + Q + VEDG++ A+ + D ++DA G V P
Sbjct: 2 SKTIIKNIGKIVSGDIKSPVLQADTIVVEDGLIAAIGGEELMKDAGDATIIDAAGSTVTP 61
Query: 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYE---- 161
G +D H H+ ++AL GG T I P +
Sbjct: 62 GLLDTHVHV--SGGDYAPRQKTMDFISSALHGGVTTMISAGSPHFPGRPKDAAGTKALAI 119
Query: 162 --KKAKNSCMDYGFHM---AITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDEL 216
K+ + G + A+ + ++ M KE G+ G+ N E
Sbjct: 120 TLSKSYYNARPAGVKVHGGAVILEKGLTEEDFIEMKKE-GVWIVGEVG--LGTIK-NPED 175
Query: 217 LIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAI 276
+ G +H G ++ + I +
Sbjct: 176 AAPMVEWAHKHGFKVQMHTG-GTSIPGSSTVTADDVIKTKPDVVSHINGGPTAISVQEVD 234
Query: 277 RLAEFVNTPLYVVHVMSMDAMEEI---AKARKAGPNFLNTT 314
R+ + + + +V + + + A + +
Sbjct: 235 RIMDETDFAMEIVQCGNPKIADYVARRAAEKGQLGRVIFGN 275
>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure
initiative, N SGX research center for structural
genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens}
PDB: 3t81_A 3t8l_A
Length = 608
Score = 80.8 bits (199), Expect = 5e-17
Identities = 37/191 (19%), Positives = 66/191 (34%), Gaps = 17/191 (8%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
+LI GGT+V+ ++ AD+ + ++ +V + D +V+DA G +V PG ID H
Sbjct: 37 VLITGGTLVDVVTGELRPADIGIVGALIASVHEPASRRDAAQVIDAGGAYVSPGLIDTHM 96
Query: 113 HLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYG 172
H+ S ++ A G TT+ D N G K +N +
Sbjct: 97 HI----ESSMITPAAYA-AAVVARGVTTIVWDPHEFGNVHGVDGVRWAAKAIENLPLRAI 151
Query: 173 F---------HMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKR 223
+ + + ++ I M +G D + +
Sbjct: 152 LLAPSCVPSAPGLERGGADFDAAILADLLSWPEIGGIAEIMNMRGVIE-RDPRMSGIVQA 210
Query: 224 CKSLGALAMVH 234
+ L H
Sbjct: 211 GLAAEKLVCGH 221
>3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK
structural genomix research consortium, NYSGXRC, H
PSI-2; 2.06A {Thermotoga maritima}
Length = 396
Score = 80.1 bits (197), Expect = 5e-17
Identities = 56/278 (20%), Positives = 96/278 (34%), Gaps = 42/278 (15%)
Query: 52 SSKILIKGGTVVNAHHQQI-ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
S KIL K TV + DV V +G V V NI D +++D TGKF+ PG +D
Sbjct: 4 SVKILFKNATVFPITSRPFKGDVLVSNGKVEKVGENIED-PDAEIVDLTGKFLFPGFVDA 62
Query: 111 HTHLAM--EFMGSETIDDFFSGQAA-------------------ALAGGTTMHIDFVIPI 149
H+H+ + E +G D + ALAGG T ++P
Sbjct: 63 HSHIGLFEEGVGYYYSDGNEATDPVTPHVKALDGFNPQDPAIERALAGGVTSV--MIVPG 120
Query: 150 NGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS 209
+ + G + +E + + + G N + + K +
Sbjct: 121 SANPVGGQGSV------------IKFRSIIVEECIVKDPAGLKMAFGENPKRVYGERKQT 168
Query: 210 F---MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPL 266
M ++ + F + K+ + + G E +M +R
Sbjct: 169 PSTRMGTAGVIRDYFTKVKNYMKKKELAQKEGKEFTETDLKMEVG-EMVLRKKIPARMHA 227
Query: 267 LEGEATTRAIRLAEFVNTPLYVVHVM-SMDAMEEIAKA 303
+ AIR+AE L + H + + +A+
Sbjct: 228 HRADDILTAIRIAEEFGFNLVIEHGTEAYKISKVLAEK 265
>1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase,
metalloprotease; HET: KCX; 1.65A {Escherichia coli}
SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A*
1pok_B* 2aqo_A* 1ybq_A* 2aqv_A*
Length = 390
Score = 76.7 bits (189), Expect = 7e-16
Identities = 37/219 (16%), Positives = 73/219 (33%), Gaps = 16/219 (7%)
Query: 50 QSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN--VGDDVKVLDATGKFVMPGG 107
++ L++G + + I DV V +G ++AV NI + + V+D +G+ + PG
Sbjct: 5 TAAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPGF 64
Query: 108 IDPHTHLAM-EFMGSETIDDFFSGQAAALAGGTTMHI-----DFVIPINGSLTAGFEAYE 161
ID H HL T + G T + D + SL A A
Sbjct: 65 IDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLLGTDSISRHPESLLAKTRALN 124
Query: 162 KKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGF 221
++ ++ M G + ++ ++ ++ S + L
Sbjct: 125 EEGISAWMLTGAYHVPSRTITGSVEKDVAIIDRVIGVKCAISD--HRSAAPDVYHLANMA 182
Query: 222 KRCKSLGALA------MVHAENGDAVFEGQKRMIELGIT 254
+ G L + H + + ++E
Sbjct: 183 AESRVGGLLGGKPGVTVFHMGDSKKALQPIYDLLENCDV 221
>2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex,
amido hydrola 9244B, structural genomics, PSI-2; HET:
KCX; 2.62A {Agrobacterium tumefaciens}
Length = 417
Score = 76.3 bits (187), Expect = 1e-15
Identities = 45/277 (16%), Positives = 84/277 (30%), Gaps = 13/277 (4%)
Query: 44 GPQCGIQSSSKILIKGGTVV---NAHHQQIADVYVE-DGIVVAVQPNINVGDDVKVLDAT 99
G Q + IL+ V Q D+ + DG + AV + D + +DA
Sbjct: 6 GEQAKTPLQAPILLTNVKPVGFGKGASQSSTDILIGGDGKIAAVGSALQAPADTQRIDAK 65
Query: 100 GKFVMPGGIDPHTHL--AMEFMGSETIDDFF-SGQAAALAGGTTMHID---FVIPINGSL 153
G F+ PG +D H H+ + + G + G+ + F I
Sbjct: 66 GAFISPGWVDLHVHIWHGGTDISIRPSECGAERGVTTLVDAGSAGEANFHGFREYIIEPS 125
Query: 154 TAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKE--KGINSFKFFMAYKGSFM 211
+A+ + + ++ D + E + I K ++ +
Sbjct: 126 RERIKAFLNLGSIGLVACNRVPELRDIKDIDLDRILECYAENSEHIVGLKVRASHVITGS 185
Query: 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRP-PLLEGE 270
+ G K K L MVH A+++ ++ G ++E E
Sbjct: 186 WGVTPVKLGKKIAKILKVPMMVHVGEPPALYDEVLEILGPGDVVTHCFNGKSGSSIMEDE 245
Query: 271 ATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAG 307
L + H + + + A G
Sbjct: 246 DLFNLAERCAGEGIRLDIGHGGASFSFKVAEAAIARG 282
>2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural
genomics, protein structure initiative, PSI; 2.31A
{Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3mkv_A*
Length = 426
Score = 70.1 bits (172), Expect = 1e-13
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 51 SSSKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGG 107
S + L + G +++ H + ++ +EDG + V + V+D GK +MPG
Sbjct: 2 SLTTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPGL 61
Query: 108 IDPHTHLAMEFMGSETIDDFFSGQAAALA 136
ID H H+ + + A
Sbjct: 62 IDLHVHVVAIEFNLPRVATLPNVLVTLRA 90
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure
initiative, PSI-2, NYSGXRC, structural genomics; 2.33A
{Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Length = 418
Score = 68.5 bits (168), Expect = 4e-13
Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 12/110 (10%)
Query: 52 SSKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPN-INVGDDVKVLDATGKFVMPGG 107
SK LI G +++ Q+ + ++ I+ ++ I+ D +D V+PG
Sbjct: 6 DSKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKKGFISSNDFEDYIDLRDHTVLPGL 65
Query: 108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGF 157
+D H H E+ + A+ ++ + +GF
Sbjct: 66 MDMHVHFGQEYQSKAQAPIKVEREMQAILATQHAYV--------TFKSGF 107
>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural
genomics, protein structure initiative, PSI; 2.63A
{Unidentified} PDB: 3lwy_A* 3n2c_A*
Length = 423
Score = 67.4 bits (165), Expect = 9e-13
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 51 SSSKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGG 107
S + +++GG V++ + V ++ +V V + + +D GK VMPG
Sbjct: 2 SLTITVLQGGNVLDLERGVLLEHHHVVIDGERIVEVTDRPVDLPNAQAIDVRGKTVMPGF 61
Query: 108 IDPHTHLAME 117
ID H H+
Sbjct: 62 IDCHVHVLAS 71
>2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide
isopropylaminohydrolase ATZC, structural genomics,
NYSGXRC, target 9364B; 2.24A {Pseudomonas SP}
Length = 403
Score = 67.3 bits (164), Expect = 1e-12
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++I+ + + + D+ + ++ ++ I G +DA G V PG +D HTH+
Sbjct: 7 LIIRNAYL--SEKDSVYDIGIVGDRIIKIEAKIE-GTVKDEIDAKGNLVSPGFVDAHTHM 63
Query: 115 AMEFMGSETIDDFFSGQAAALAGG 138
F + F +
Sbjct: 64 DKSFTSTGERLPKFWSRPYTRDAA 87
>3h4u_A Amidohydrolase; signature of Zn ligands, structural genomics,
NYSGXRC, target 9236E, PSI-2, protein structure
initiative; 2.20A {Unidentified} PDB: 3hpa_A
Length = 479
Score = 66.1 bits (162), Expect = 3e-12
Identities = 45/269 (16%), Positives = 86/269 (31%), Gaps = 68/269 (25%)
Query: 51 SSSKILIKGGTVV---NAHHQQI--ADVYVEDGIVVAVQPNINVGDDV-KVLDATGKFVM 104
+L+K V+ + +++ A +Y+ED +VAV P+ + + +VLD G V+
Sbjct: 27 RPKTLLVKHADVLVTMDDTRRELRDAGLYIEDNRIVAVGPSAELPETADEVLDLRGHLVI 86
Query: 105 PGGIDPHTHLAMEFM-GSETIDDF-------------------FSGQAAALA------GG 138
PG ++ H H+ + + A G
Sbjct: 87 PGLVNTHHHMYQSLTRAVPAAQNAELFGWLTNLYKIWAHLTPEMIEVSTLTAMAELLQSG 146
Query: 139 TTMHID--FVIPINGSLTAGFEAYEK-----KAKNSCMDYGFHMAITKWDEVVSDEMEVM 191
T D ++ P L A ++ A M G D VV E +++
Sbjct: 147 CTTSSDHLYIYPNGSRLDDSIGAAQRIGMRFHASRGAMSVGQRDGGLPPDSVVEREPDIL 206
Query: 192 VKEKGINSFKFFMAYKGS---------------FMINDELLIEGFKRCKSLGALAMVH-A 235
+ + Y F ++ +L+ + + G H A
Sbjct: 207 RD-----TQRLIETYHDEGRYAMLRVVVAPCSPFSVSRDLMRDAAVLAREYGVSLHTHLA 261
Query: 236 ENGDAVFEGQKR--------MIELGITGP 256
EN + + +++ +LG G
Sbjct: 262 ENVNDIAYSREKFGMTPAEYAEDLGWVGH 290
>3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A
{Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A*
Length = 456
Score = 64.6 bits (158), Expect = 8e-12
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 55 ILIKGGTVV---NAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
ILI+G T V + +++ AD+ ++ +VAV +++ + +D G +PG I+
Sbjct: 2 ILIRGLTRVITFDDQERELEDADILIDGPKIVAVGKDLSDRSVSRTIDGRGMIALPGLIN 61
Query: 110 PHTHLAMEFM-GSETIDD 126
H HL M ++
Sbjct: 62 SHQHLYEGAMRAIPQLER 79
>1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation
change, D314G mutant, hydrolase; 1.12A {Escherichia
coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A
1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A
3g77_A
Length = 430
Score = 64.2 bits (156), Expect = 1e-11
Identities = 39/272 (14%), Positives = 74/272 (27%), Gaps = 44/272 (16%)
Query: 49 IQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGG 107
+ +++ I + + + ++++DG + A+ V LDA V+P
Sbjct: 4 MANNALQTIINARL--PGEEGLWQIHLQDGKISAIDAQSGVMPITENSLDAEQGLVIPPF 61
Query: 108 IDPHTHLAMEFMGSE-----------------------TIDDFFSGQAAAL----AGGTT 140
++PH HL + T DD L A G
Sbjct: 62 VEPHIHLDTTQTAGQPNWNQSGTLFEGIERWAERKALLTHDDVKQRAWQTLKWQIANGIQ 121
Query: 141 M---HIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGI 197
H+D +L A E ++ A + + + G
Sbjct: 122 HVRTHVDVSDATLTALKAMLEVKQEVAPWIDLQIVAFPQEGILSYPNGEALLEEALRLGA 181
Query: 198 NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIEL----- 251
+ ++ + E L + F + L VH E D + + L
Sbjct: 182 DVVGAIPHFEFTREYGVESLHKTFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAHHEG 241
Query: 252 ---GITGPEGHALSRPPLLEGEATTRAIRLAE 280
+T A+ + L
Sbjct: 242 MGARVTASHTTAMHSYN--GAYTSRLFRLLKM 271
>3be7_A Zn-dependent arginine carboxypeptidase; unknown source,
amidohydrolase, sargasso SEA, structural GEN protein
structure initiative, PSI; HET: ARG; 2.30A
{Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A*
Length = 408
Score = 63.5 bits (155), Expect = 2e-11
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 51 SSSKILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
+S LIK ++ +I AD+ + +G + + D V+ ++PG +
Sbjct: 4 TSEDFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGKI--NTKDATVISIPDLILIPGLM 61
Query: 109 DPHTHLAME 117
D H H+
Sbjct: 62 DSHVHIVGN 70
>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl phosphonate
derivative of L- arginine, hydrolase; HET: KCX M3R;
1.70A {Caulobacter crescentus CB15} PDB: 3mtw_A*
Length = 403
Score = 63.5 bits (155), Expect = 2e-11
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 52 SSKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPN-INVGDDVKVLDATGKFVMPGG 107
+ + +++ + V V DG + ++ V +D G ++PG
Sbjct: 1 AEIKAVSAARLLDVASGKYVDNPLVIVTDGRITSIGKKGDAVPAGATAVDLPGVTLLPGL 60
Query: 108 IDPHTHLAME 117
ID H HL
Sbjct: 61 IDMHVHLDSL 70
>1ejx_C Urease alpha subunit; alpha-beta barrel, nickel metalloenzyme,
temperature depende structural changes, hydrolase; HET:
KCX; 1.60A {Klebsiella aerogenes} SCOP: b.92.1.1 c.1.9.2
PDB: 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1ef2_A* 1ejv_C*
1ejt_C* 1eju_C* 1ejs_C* 1ejr_C* 1krc_C 1krb_C* 1fwi_C*
1fwa_C* 1fwb_C* 1fwc_C* 1fwd_C* 1fwe_C* 1fwg_C* 1a5k_C
...
Length = 567
Score = 63.6 bits (154), Expect = 2e-11
Identities = 39/256 (15%), Positives = 69/256 (26%), Gaps = 27/256 (10%)
Query: 46 QCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN----------VGDDVKV 95
Q +++ +V+ AD+ V+DG + A+ N +G +V
Sbjct: 59 QMLAADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEV 118
Query: 96 LDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTA 155
+ A GK V GGID H H E SG + GGT
Sbjct: 119 IAAEGKIVTAGGIDTHIHWICPQQAEE---ALVSGVTTMVGGGTGPAAGTHATTCTPGPW 175
Query: 156 GFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDE 215
+ A + ++ G E G+ K + + D
Sbjct: 176 YISRMLQAADSLPVNIGLLGKGNVSQPDALREQV----AAGVIGLKIHEDWGATPAAID- 230
Query: 216 LLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA 275
+ +H++ + + + + G EG A
Sbjct: 231 ---CALTVADEMDIQVALHSDTLNESGFVEDTLAAI------GGRTIHTFHTEGAGGGHA 281
Query: 276 IRLAEFVNTPLYVVHV 291
+ P +
Sbjct: 282 PDIITACAHPNILPSS 297
>1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase,
PSI, protein structure initiative; 1.50A {Thermotoga
maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A
Length = 406
Score = 61.4 bits (150), Expect = 8e-11
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
++I ++ + V +E+G + V G+ LD +GK VMP + HT
Sbjct: 1 MIIGNCLILKDFSSEPFWGAVEIENGTIKRVLQ----GEVKVDLDLSGKLVMPALFNTHT 56
Query: 113 HLAMEFM 119
H M +
Sbjct: 57 HAPMTLL 63
>2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II,
amidohydrolase, sargasso SEA, enviro sample, structural
genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9
Length = 492
Score = 61.5 bits (150), Expect = 1e-10
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 11/86 (12%)
Query: 51 SSSKILIKGGTVVNAHHQQI---------ADVYVEDGIVVAVQPNINVGDDVKVLDATGK 101
+ LI+ + + D+ + + A+ + ++DAT
Sbjct: 8 TQPSTLIRNAAAIMTGGRGTADDPSRVPGPDIRIVGDTIDAIGALAPRPGE-TIVDATDC 66
Query: 102 FVMPGGIDPHTHLAMEFM-GSETIDD 126
+ P ++ H HL + G D
Sbjct: 67 VIYPAWVNTHHHLFQSLLKGEPAGLD 92
>4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural
genomics, PSI-biology; HET: MSE MTA; 1.80A
{Chromobacterium violaceum} PDB: 4f0s_A*
Length = 447
Score = 60.7 bits (148), Expect = 2e-10
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 50 QSSSKILIKGGTVV--NAHHQQIAD--VYVEDGIVVAVQPNINVG--DDVKVLDATGKFV 103
QS + +I ++ + + + + + DG + A+ P + + + L+ +
Sbjct: 3 QSRYEKIISARWIITVETDGEVLENHAIAIRDGKIAAIIPAADAAGLEADERLELPDHVL 62
Query: 104 MPGGIDPHTHLAMEFM 119
MPG I+ H H AM +
Sbjct: 63 MPGLINLHGHSAMSLL 78
>4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO
PSI-biology, NEW YORK structural genomics research
consorti hydrolase; 2.00A {Pseudomonas aeruginosa}
Length = 451
Score = 60.3 bits (147), Expect = 2e-10
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 55 ILIKGGTVV--NAHHQQI--ADVYVEDGIVVAVQPNINVG--DDVKVLDATGKFVMPGGI 108
+L+ +V + + + DG + V P ++ + G + PG +
Sbjct: 10 LLLLPTWIVPVEPAGVVLRDHALGIRDGQIALVAPREQAMRHGATEIRELPGMLLAPGLV 69
Query: 109 DPHTHLAM 116
+ H H AM
Sbjct: 70 NAHGHSAM 77
>4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK
structural genomics research consortium; 1.55A
{Xanthomonas campestris PV}
Length = 472
Score = 60.3 bits (147), Expect = 2e-10
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 55 ILIKGGTVV--NAHHQQIAD--VYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGG 107
+LI+ G VV H + D V V +G++VAV P + + + +MPG
Sbjct: 16 LLIEAGYVVPIEPHAVVLEDHAVAVSNGVIVAVLPTADARVRFAPARTVSRPDAALMPGL 75
Query: 108 IDPHTHLAMEFM 119
++ HTH M +
Sbjct: 76 VNAHTHNPMTLL 87
>3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase;
1.50A {Bordetella bronchiseptica} PDB: 3giq_A*
Length = 480
Score = 59.6 bits (144), Expect = 4e-10
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 55 ILIKGGTVVN--AHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
I GG +++ ++ AD+ V DG + A+ DA+GK V PG ID H
Sbjct: 9 FKITGGWIIDGTGAPRRRADLGVRDGRIAAIGELGAHPAR-HAWDASGKIVAPGFIDVHG 67
Query: 113 H 113
H
Sbjct: 68 H 68
>1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase;
1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6
c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A
1m7j_A
Length = 496
Score = 58.5 bits (141), Expect = 1e-09
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 55 ILIKGGTVVN--AHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
++ GGTV++ ++ADV V + AV ++ D GK V PG ID HT
Sbjct: 23 YILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSASSARRRI-DVAGKVVSPGFIDSHT 81
Query: 113 H 113
H
Sbjct: 82 H 82
>3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel,
beta-fold, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 2.10A {Oleispira antarctica}
Length = 468
Score = 58.0 bits (141), Expect = 1e-09
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 31 SNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVV--------NAHHQQIAD--VYVEDGIV 80
SN + D+ S Q ++ + + I ++ N + D + ++DGI+
Sbjct: 1 SNAMSKDSESNLAQRQSQPKAHADLRINSHWIIPIENTTDHNLVSNILIDHCLLIKDGII 60
Query: 81 VAVQPNINV-GDDVKVLDATGKFVMPGGIDPHTHLAM 116
+A++P + + LD + +MPG ++ H H AM
Sbjct: 61 LAIEPQSSCQIPATETLDLGQQVLMPGWVNAHGHAAM 97
>2p9b_A Possible prolidase; protein structure initiative II, PSI-2,
amidohydrolase, structural genomics; 1.70A
{Bifidobacterium longum NCC2705} SCOP: b.92.1.10
c.1.9.17
Length = 458
Score = 57.1 bits (138), Expect = 3e-09
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 52 SSKILIKGGTVVNAH-----HQQIADVYVEDGIVVAVQPN--INVGDDVKVLDATGKFVM 104
+ T+V + + V DG + V P+ ++ + LD TGK VM
Sbjct: 11 VEPFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSIPAEYHYLDGTGKIVM 70
Query: 105 PGGIDPHTHLAME 117
PG I+ HTHL +
Sbjct: 71 PGLINAHTHLFSQ 83
>2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate,
product-bound, structural genomics, protein STRU
initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens
str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A
Length = 419
Score = 56.8 bits (137), Expect = 3e-09
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Query: 51 SSSKILIKGGTVV--NAHHQQI-----ADVYVEDGIVVAVQPNINV----GDDVKVLDAT 99
++ L + + N I A + V +G + P ++ + D
Sbjct: 13 GNATALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDLSTADETTDCG 72
Query: 100 GKFVMPGGIDPHTHLAM 116
G+++ P ID HTHL
Sbjct: 73 GRWITPALIDCHTHLVF 89
>3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct
phosphate, carbohydrate metabolism, hydrolase; HET: F6P;
2.53A {Vibrio cholerae} PDB: 3egj_A*
Length = 381
Score = 56.4 bits (137), Expect = 3e-09
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Query: 51 SSSKILIKGGTVVNAHHQQI-ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
S++ + + + + V + + AV P ++ ++ V+D G + PG ID
Sbjct: 1 SNAMYALTNCKIYTGNDVLVKHAVIINGDKIEAVCPIESLPSEMNVVDLNGANLSPGFID 60
Query: 110 PHTHLAM--EFMGSETIDDFFSGQAAALAGGTT 140
+ F T + + A L G T
Sbjct: 61 LQLNGCGGVMFNDEITAETIDTMHKANLKSGCT 93
>2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus
subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A
Length = 421
Score = 55.9 bits (135), Expect = 6e-09
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 71 ADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAM 116
A V + + +V + +++D +G+ V PG +DPHTHL
Sbjct: 38 AVVGIHEQKIVFAGQKGAEAGYEADEIIDCSGRLVTPGLVDPHTHLVF 85
>2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo
4YL)-propionic acid, PSI-2 community, structural
genomics, structure initiative; HET: DI6; 1.97A
{Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A*
Length = 416
Score = 54.9 bits (132), Expect = 1e-08
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
Query: 52 SSKILIKGGTVV-----NAHHQQI--ADVYVEDGIVVAVQP--NINVGDDVKVLDATGKF 102
+ + + T A + + + V +G + A+ P ++ D GK
Sbjct: 4 NCERVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKGPYPAHWQDMKGKL 63
Query: 103 VMPGGIDPHTHLAM 116
V PG ID HTHL
Sbjct: 64 VTPGLIDCHTHLIF 77
>1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel,
beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP:
b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A*
Length = 382
Score = 54.1 bits (131), Expect = 2e-08
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 57 IKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH-- 113
+ G + H V + DG++ +V P + +++ G + PG ID +
Sbjct: 4 LTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPGFIDVQLNGC 63
Query: 114 ---LAMEFMGSETIDDFFSGQAAALAGGTT 140
+ + +++ Q A G T
Sbjct: 64 GGVQFNDTAEAVSVETLEIMQKANEKSGCT 93
>2i9u_A Cytosine/guanine deaminase related protein; protein structure
initiative II (PSI-II), amidohydrol guanine deaminase;
HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP:
b.92.1.4 c.1.9.9
Length = 439
Score = 52.6 bits (127), Expect = 6e-08
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 49 IQSSSKILIKGGTVVNAHHQQI-----ADVYVEDGIVVAVQPNINVG-DDVKVLDATGKF 102
+ + + KG + + + + V DG + +V N+ ++D
Sbjct: 5 EKDINLKIFKGNLIFTKTSDKFTIMKDSYIVVIDGKIASVSSNLPDKYKGNPIIDFRNNI 64
Query: 103 VMPGGIDPHTHLAM 116
++PG D H H +
Sbjct: 65 IIPGMNDLHAHASQ 78
>3icj_A Uncharacterized metal-dependent hydrolase; structural genomics,
amidohydrolase, PSI-2, protein structur initiative; HET:
KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X*
Length = 534
Score = 52.3 bits (126), Expect = 9e-08
Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 14/111 (12%)
Query: 13 LTSVALLLLLLYFPPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTV--VNAHHQQI 70
L S+ + + + + G + GT+ + +++
Sbjct: 3 LASLPISNFFTFNHQSTLFTKVKNFMG-------VKHIGDCMKALINGTIYTSFSPVKKV 55
Query: 71 ADVYVEDGIVVAV-----QPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM 116
+ + + + V+ I +++D GKFVMP D H HL
Sbjct: 56 SGLVISNERVLYAGDSSTALRIAELAGGEIIDLKGKFVMPAFFDSHLHLDE 106
>2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural
genomics, protein structure initiative; 1.78A
{Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16
Length = 420
Score = 51.6 bits (124), Expect = 1e-07
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 4/65 (6%)
Query: 56 LIKGGTVVNAHHQQIAD--VYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPH 111
L+ + + V V V A + + G + P ++ H
Sbjct: 40 LLTCDVLYTGMGGAQSPGGVVVVGETVAAAGHPDELRRQYPHAAEERAGAVIAPPPVNAH 99
Query: 112 THLAM 116
THL M
Sbjct: 100 THLDM 104
>2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N-
acetyleglucosamine-6-phosphate, carbohydrate metabolism,
hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis}
Length = 396
Score = 51.5 bits (124), Expect = 2e-07
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)
Query: 52 SSKILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQP-NINVGDDVKVLDATGKFVMPGGID 109
+ +LIK +V + + V + DG + V ++ ++PG ID
Sbjct: 2 AESLLIKDIAIVTENEVIKNGYVGINDGKISTVSTERPKEPYSKEIQAPADSVLLPGMID 61
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAG-GTT 140
H H + ++ L GTT
Sbjct: 62 IHIHGGYGADTMDASFSTLDIMSSRLPEEGTT 93
>3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group.,
structural genomics, PSI-2, protein structure
initiative; 2.00A {Bacillus thuringiensis
serovarkonkukian}
Length = 81
Score = 47.1 bits (113), Expect = 2e-07
Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 55 ILIKGGTV--VNAHHQQIADVYVEDGIVVAV---QPNINVGDDVKVLDATGKFVMPGGID 109
+++ G + ++ +++ + + DG++ AV + + + K +D K +PG D
Sbjct: 6 MILYNGKITTLDPSQPEVSAIAITDGLITAVGGDELLNSATEKTKKIDLKRKRAIPGLND 65
Query: 110 PHTHL 114
H H+
Sbjct: 66 SHIHV 70
>3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio
initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP}
Length = 427
Score = 50.7 bits (122), Expect = 3e-07
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 55 ILIKGGTVVNAHHQQIADVYV-EDGIVVAVQPNINVGD---DVKVLDATGKFVMPGGIDP 110
+IK ++ I D V D + A+ N+ + V ++PG +P
Sbjct: 2 RIIKPFAILTPQ-TIIQDKAVAFDKKIEAIDTVENLIKKYPNAAVEHDENSLLLPGFANP 60
Query: 111 HTHLAM 116
H HL
Sbjct: 61 HLHLEF 66
>2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine,
structural genomics, protein structure initiative; HET:
GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4
c.1.9.9
Length = 475
Score = 49.3 bits (118), Expect = 8e-07
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 71 ADVYVEDGIVVAVQPNINVGD---DVKVLDATGKFVMPGGIDPHTHLAM 116
+ V DG++ A P + V++ + ++PG ID H HL
Sbjct: 36 GLMVVTDGVIKAFGPYEKIAAAHPGVEITHIKDRIIVPGFIDGHIHLPQ 84
>4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease; 2.05A {Brucella
melitensis biovar abortus}
Length = 458
Score = 47.7 bits (114), Expect = 3e-06
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 71 ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119
+ + G++ +++ + G D D V+ G + H+H M
Sbjct: 29 VRIGIAGGVICSIETGVLAGPD----DERQSVVVAGMANLHSHAFQYGM 73
>1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics,
TM0814, JCSG, PSI, protein structure initiative; 2.50A
{Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10
Length = 376
Score = 44.1 bits (105), Expect = 3e-05
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 50 QSSSKILIKGGTVVNAHHQQI-ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
++++ +V+ + DV +E+G +V V+ +MPG +
Sbjct: 8 HHHHHMIVEKVLIVDPIDGEFTGDVEIEEGKIVKVEKRE---------CIPRGVLMPGFV 58
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAG-GTT 140
DPH H +G++T++ FS L G T
Sbjct: 59 DPHIHGV---VGADTMNCDFSEMEEFLYSQGVT 88
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 1e-04
Identities = 63/385 (16%), Positives = 107/385 (27%), Gaps = 129/385 (33%)
Query: 2 IHSMASAFTHQLTSVAL---LLLLLYF-------PPISESNN--LF--CDAGS-----EY 42
IH++A+ + + + L+ Y P + +N LF G+ +
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 43 GGPQCGIQSSSKI----LIKGGTVVNAHHQQIADVY---VEDGIVVAVQPNINVGDDVKV 95
GG Q ++ L + + Y V D I + + +
Sbjct: 161 GG-----QGNTDDYFEEL-----------RDLYQTYHVLVGDLIKFSAETLSELIRT--T 202
Query: 96 LDATGKFVMPGGIDPHTHLAMEFMGSETI--DDFFSGQAAALAGGTTMHIDFVIPINGSL 153
LDA F G++ L D+ + ++ P+ G +
Sbjct: 203 LDAEKVF--TQGLNILEWLE----NPSNTPDKDYLL--SIPIS----------CPLIG-V 243
Query: 154 TAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMV---KEKGINSFK--FFMAYKG 208
Y AK G + K S + V + SF A
Sbjct: 244 IQ-LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 209 SFMINDELLIEGFKRCK------SLGALAMVH--AENGDAVFEGQKR-MIELGITGPEGH 259
F I G RC SL +++ EN EG M L I+
Sbjct: 303 LFFI-------GV-RCYEAYPNTSL-PPSILEDSLENN----EGVPSPM--LSISN---- 343
Query: 260 ALSRPPLLEGEATTRA-------IRLAEFVNTPL-YVV--HVMSMDAMEEIAKARKAGPN 309
L++ + + T + + ++ VN VV S+ + + KA
Sbjct: 344 -LTQEQVQDYVNKTNSHLPAGKQVEIS-LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG 401
Query: 310 ------------------FLNTTIP 316
FL P
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVASP 426
Score = 38.1 bits (88), Expect = 0.004
Identities = 38/240 (15%), Positives = 71/240 (29%), Gaps = 72/240 (30%)
Query: 113 HLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYG 172
L +F+G + S G + L +E
Sbjct: 59 ELVGKFLG------YVSSLVEPSKVGQFDQV---------LNLCLTEFENC--------- 94
Query: 173 F------HMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226
+ H K + ++ ++ ++ I ++ M K+ S
Sbjct: 95 YLEGNDIHALAAKLLQ--ENDTTLVKTKELIKNY-----ITARIMAKRPFD----KKSNS 143
Query: 227 LGALAMVHAENGD----AVFEGQKRMIELGITG---PEGHALSR-----PPLLEGEATTR 274
AL G+ A+F GQ G T E L L+
Sbjct: 144 --AL-FRAVGEGNAQLVAIFGGQ------GNTDDYFEE---LRDLYQTYHVLVGDLIKFS 191
Query: 275 AIRLAEFVNTPLYV--VHVMSMDAMEEIAKARKA-GPNFLNTTIPLCDSCSNIIRMVEFC 331
A L+E + T L V ++ +E + ++L +IP+ SC +I +++
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL-LSIPI--SC-PLIGVIQLA 247
>3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family,
N-formimino-L-glutamate iminohydrolas
guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas
aeruginosa} PDB: 3mdw_A*
Length = 453
Score = 41.9 bits (99), Expect = 2e-04
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115
L+ G N DG++ ++P + + G V+PG + H+H
Sbjct: 10 LLPEGWARNV-----RFEISADGVLAEIRP----DANADGAERLGGAVLPGMPNLHSHAF 60
Query: 116 MEFM 119
M
Sbjct: 61 QRAM 64
>3la4_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX;
2.05A {Canavalia ensiformis}
Length = 840
Score = 40.6 bits (95), Expect = 6e-04
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 24/95 (25%)
Query: 71 ADVYVEDGIVVA------------VQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF 118
AD+ ++DG++ + V N+ +G + +V+ G V G ID H H
Sbjct: 355 ADIGIKDGLIASIGKAGNPDIMNGVFSNMIIGANTEVIAGEGLIVTAGAIDCHVHYICPQ 414
Query: 119 MGSETIDDFFSGQAAALAGG-TTMHIDFVIPINGS 152
+ E A++ G TT+ P G+
Sbjct: 415 LVYE-----------AISSGITTLVGGGTGPAAGT 438
>4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A
{Homo sapiens} PDB: 2uz9_A* 3e0l_A
Length = 476
Score = 38.1 bits (89), Expect = 0.003
Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 57 IKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLD-ATGKFVMPGGIDPHTHLA 115
++ + + +I V++E+ ++ + + +F MPG +D H H +
Sbjct: 51 LRDHLLGVSDSGKI--VFLEEASQQEKLAKEWCFKPCEIRELSHHEFFMPGLVDTHIHAS 108
Query: 116 M 116
Sbjct: 109 Q 109
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.29
Identities = 28/179 (15%), Positives = 57/179 (31%), Gaps = 57/179 (31%)
Query: 180 WDEVVSDEMEVMVKEKGINSFKFFMAYK----GSFMINDELLIEGFKRCKSLGALAMVHA 235
W +V+ ++ V+V + K+ + K + I + +E + ++ AL H
Sbjct: 396 WFDVIKSDVMVVVNK----LHKYSLVEKQPKESTISIPS-IYLELKVKLENEYAL---H- 446
Query: 236 ENGDAVFEGQKRMIE--LGITGPEGHALSRPPLLEG----------EATTRAIRLAEFVN 283
+ +++ + L PP L+ + R+ F
Sbjct: 447 ----------RSIVDHYNIPKTFDSDDLI-PPYLDQYFYSHIGHHLKNIEHPERMTLF-- 493
Query: 284 TPLYVVHVMSMDAMEEIAKARKAGPNF------LNTTIPL-------CDSCSNIIRMVE 329
++ + +E K R + LNT L CD+ R+V
Sbjct: 494 RMVF----LDFRFLE--QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent
methyltransferase fold; 2.00A {Escherichia coli K12}
Length = 396
Score = 31.9 bits (73), Expect = 0.29
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 75 VEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA---MEFMGSETID-DFF 128
V G V ++ ++G+ + ++D GK++ G P + + F SE+ID FF
Sbjct: 22 VFSGAVARMEGKASLGETIDIVDHQGKWLARGAYSPASQIRARVWTFDPSESIDIAFF 79
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Length = 396
Score = 31.3 bits (71), Expect = 0.40
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 75 VEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA---MEFMGSETID-DFF 128
V VV V+ +I GD V+V GKF+ G +P++++ + I+ D F
Sbjct: 21 VFKKGVVRVEGDIKPGDIVEVYTRGGKFLGKGFANPNSNIMVRIVTKDKDVEINKDLF 78
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1,
structural genomics, structural genom consortium, SGC,
oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB:
2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Length = 392
Score = 31.0 bits (71), Expect = 0.45
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 268 EGE-ATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFL 311
+GE AT RA + + T ++ + ++EE+A+A +L
Sbjct: 111 DGELATVRA---CQSLGTG-MMLSSWATSSIEEVAEAGPEALRWL 151
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH
oxidoreductase-oxidoreductase inhibitor complex; HET:
FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Length = 352
Score = 31.0 bits (71), Expect = 0.53
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 268 EGE-ATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFL 311
+GE +T RA A+ N YV+ + ++E+I A G +
Sbjct: 86 DGEKSTARA---AQEANIC-YVISSYASYSLEDIVAAAPEGFRWF 126
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET:
FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A*
2e77_A* 2j6x_A*
Length = 368
Score = 30.6 bits (70), Expect = 0.60
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 268 EGE-ATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGPNFL 311
E T RA T + S EEI++ GP +
Sbjct: 97 TKEAGTARA---VSEFGTI-MSISAYSGATFEEISEGLNGGPRWF 137
>3dlo_A Universal stress protein; unknown function, structural genomics,
PSI-2, protein struct initiative, midwest center for
structural genomics; HET: MSE; 1.97A {Archaeoglobus
fulgidus} PDB: 3qtb_A*
Length = 155
Score = 30.0 bits (68), Expect = 0.62
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 271 ATTRAIRLAEFVNTPLYVVHVMSMDAM---EEIAKARKA 306
A A P+YVVH + E+I +A++
Sbjct: 41 VLRFAAEEARLRGVPVYVVHSLPGGGRTKDEDIIEAKET 79
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol
transfer, signaling protein; 1.90A {Drosophila
melanogaster} SCOP: b.86.1.1
Length = 145
Score = 28.9 bits (64), Expect = 1.4
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 71 ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFV 103
+ +E G+ + +++GD V + A G+ V
Sbjct: 6 STALLESGVRKPLG-ELSIGDRVLSMTANGQAV 37
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop,
transcription, protein binding; 2.40A {Drosophila
melanogaster}
Length = 257
Score = 29.2 bits (65), Expect = 1.8
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 256 PEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS--MDAMEEIAKARKAGPNFLNT 313
P+ L R L+ E L +F T + ++ IAK R P F+
Sbjct: 195 PDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMR---PIFMGA 251
Query: 314 TIP 316
+
Sbjct: 252 VVE 254
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1,
PIL1, BAR domain, plasma membrane, SELF-ASS
phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Length = 234
Score = 28.8 bits (64), Expect = 1.9
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 16/97 (16%)
Query: 181 DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA 240
E+V E E +V E +++ K ++ + L E +E
Sbjct: 138 QELVRAEAESLVAEAQLSNITRE-KLKAAYSYMFDSLRE--------------LSEKFAL 182
Query: 241 VFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIR 277
+ K ++EL P +RP +G +R I
Sbjct: 183 IAGYGKALLELLDDSPVTPGEARPA-YDGYEASRQII 218
>2q07_A Uncharacterized protein AF0587; monomer, structural genomics,
PSI-2, protein structure initiative; 2.04A
{Archaeoglobus fulgidus dsm 4304} SCOP: b.122.1.1
c.18.1.4 d.17.6.5
Length = 306
Score = 28.6 bits (63), Expect = 2.8
Identities = 8/33 (24%), Positives = 10/33 (30%), Gaps = 4/33 (12%)
Query: 78 GIVVAVQPNINVGDDVKVLD----ATGKFVMPG 106
G V+ I D V + G M G
Sbjct: 247 GGVLRADEKIRPNDVVVFHNSRIFGVGLAAMSG 279
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD,
oxidoreductase, structural genomics; HET: NAD; 2.00A
{Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Length = 334
Score = 27.8 bits (62), Expect = 5.3
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 13/68 (19%)
Query: 248 MIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDA-------MEEI 300
I+ + P H ++ T A V T L +HV S+ +++
Sbjct: 181 AIKPTVEVPSHHGPDVQTVIPINIETMAFV----VPTTL--MHVHSVMVELKKPLTKDDV 234
Query: 301 AKARKAGP 308
+
Sbjct: 235 IDIFENTT 242
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal
stress protein, unknown function; HET: ATP; 2.90A
{Mycobacterium tuberculosis} PDB: 2jax_A*
Length = 309
Score = 27.3 bits (61), Expect = 6.9
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 271 ATTRAIRLAEFVNTPLYVVHVMSMDAME 298
A A R AE PL +VH +S +
Sbjct: 35 AVRWAARDAELRKIPLTLVHAVSPEVAT 62
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas
aeruginosa} PDB: 3crz_A* 1a8p_A*
Length = 257
Score = 27.0 bits (60), Expect = 7.5
Identities = 10/64 (15%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 61 TVVNAHHQQIADVY---VEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME 117
++ + ++++ + + V DG + + ++ GD++ V ++ + P HL +
Sbjct: 53 SIASPNYEEHLEFFSIKVPDGPLTSRLQHLKEGDELMVSRKPTGTLVHDDLLPGKHLYLL 112
Query: 118 FMGS 121
G+
Sbjct: 113 STGT 116
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl
transferase, structural genomics, PSI, protein structure
initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Length = 210
Score = 26.8 bits (60), Expect = 7.9
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 48 GIQSSSKILIKGGTVVNAHHQQI-ADVYVED 77
G++ K+++ G + +I AD Y D
Sbjct: 167 GLRDRVKVIVGGAPLSQDFADEIGADGYAPD 197
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2
b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Length = 184
Score = 26.7 bits (60), Expect = 8.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 75 VEDGIVVAVQPNINVGDDVKVLDATGKFV 103
+E G VV V + G+ +KV TG++V
Sbjct: 153 LETGAVVQVPLFVEPGEVIKVDTRTGEYV 181
>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein
structure initiative, TI protein; HET: GOL; 1.76A
{Bordetella bronchiseptica} PDB: 3k4w_A
Length = 291
Score = 27.1 bits (60), Expect = 8.3
Identities = 6/45 (13%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 192 VKEKGINSFKFFMAYKGS-FMINDELLIEGFKRCKSLGALAMVHA 235
+ + GI + ++D L + C+ G ++
Sbjct: 114 ILDLGIRIVNLEPGVWATPMHVDDRRLYPLYAFCEDNGIPVIMMT 158
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical
bundle C terminal rossmann fold, cobalt, metal-binding;
HET: HCB; 2.56A {Methanosarcina barkeri}
Length = 215
Score = 26.9 bits (60), Expect = 8.6
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 48 GIQSSSKILIKGGTVVNAHHQQI-ADVYVED 77
++ S K + G V + ++I AD E+
Sbjct: 173 KLRDSVKCMFGGAPVSDKWIEEIGADATAEN 203
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme,
oxidoreductase; HET: NAG FAD; 1.55A {Acremonium
strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*
Length = 503
Score = 27.0 bits (60), Expect = 8.9
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 72 DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
V V+D V +Q +G L G + G P
Sbjct: 99 RVSVDDNNVATIQGGARLGYTALELLDQGNRALSHGTCPAV 139
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H)
reductase, flavoproteins, electron transfer,
oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter
capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Length = 272
Score = 27.1 bits (60), Expect = 8.9
Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 61 TVVNAHHQQIADVY---VEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME 117
++ + + + Y V DG + + +I VG+ + + ++ + P L
Sbjct: 67 SIASPAWDEELEFYSIKVPDGPLTSRLQHIKVGEQIILRPKPVGTLVIDALLPGKRLWFL 126
Query: 118 FMGS 121
G+
Sbjct: 127 ATGT 130
>3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural
genomics, PSI-2, protein structure initiative; 2.00A
{Methanococcus maripaludis S2}
Length = 345
Score = 27.0 bits (60), Expect = 9.4
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 73 VYVEDGIVVAVQP-NINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSE 122
VY E+ + GD V ++ G VMP EFM SE
Sbjct: 56 VYPEEKRAETKVIRKVKKGDFV-LIGHNGIRVMPPEKSREAGQLFEFMNSE 105
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase,
lyase-transferase COMP; 2.50A {Xanthomonas campestris
PV}
Length = 143
Score = 26.4 bits (59), Expect = 9.4
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 265 PLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEE-IAKARKAG 307
P + G + +R+ + V V+S D E I +AG
Sbjct: 69 PGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAG 112
>1yby_A Translation elongation factor P; conserved hypothetical protein,
structural genomics, PSI, protein structure initiative;
1.95A {Clostridium thermocellum}
Length = 215
Score = 26.8 bits (60), Expect = 9.6
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 75 VEDGIVVAVQPNINVGDDVKVLDATGKFV 103
VE G + V +N GD +++ TG+++
Sbjct: 184 VETGASIKVPLFVNKGDIIRIDTRTGEYM 212
>3loq_A Universal stress protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Length = 294
Score = 27.0 bits (60), Expect = 9.7
Identities = 2/28 (7%), Positives = 9/28 (32%)
Query: 271 ATTRAIRLAEFVNTPLYVVHVMSMDAME 298
+ + V+ V+++ +
Sbjct: 38 VLEYLGDFKKVGVEEIGVLFVINLTKLS 65
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.402
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,282,239
Number of extensions: 336051
Number of successful extensions: 966
Number of sequences better than 10.0: 1
Number of HSP's gapped: 880
Number of HSP's successfully gapped: 101
Length of query: 331
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 237
Effective length of database: 4,077,219
Effective search space: 966300903
Effective search space used: 966300903
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.2 bits)