BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020080
(331 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0C0K7|EPHB6_RAT Ephrin type-B receptor 6 OS=Rattus norvegicus GN=Ephb6 PE=2 SV=3
Length = 1013
Score = 35.0 bits (79), Expect = 0.75, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 214 GRPPPPECHAELHTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCP 273
G PP C+ E R H CQAC E + +A PG + C+ CP
Sbjct: 273 GSPPRLHCNGEGRWMVAVGGCRCQPGHQPARGDKLCQACPEGSYKALPGNVPCSP---CP 329
Query: 274 AETGCHSPD 282
A + HSPD
Sbjct: 330 ARS--HSPD 336
>sp|B8H5C6|Y3506_CAUCN UPF0301 protein CCNA_03506 OS=Caulobacter crescentus (strain NA1000
/ CB15N) GN=CCNA_03506 PE=3 SV=1
Length = 195
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 29/110 (26%)
Query: 211 VLPGRPPPPECHAELHTD-----------YDGVAIRWGLTHHRDSAADCCQACIEQAKRA 259
VL G P E LHTD DGVA LT RD A D + I++ +++
Sbjct: 78 VLLGGPLERERGFVLHTDDFSSPDSTLPVADGVA----LTATRD-ALDAMASAIKRPRKS 132
Query: 260 ---------KPGQM----KCNIWVYCPAETGCHSPDKYEHKYQECWLKYA 296
PGQ+ + N+W+ C A+ G + +EHK+ K
Sbjct: 133 LLALGYAGWGPGQLEQELRDNVWLICDADEGLLFDEDHEHKWTRALAKLG 182
>sp|Q9A311|Y3395_CAUCR UPF0301 protein CC_3395 OS=Caulobacter crescentus (strain ATCC
19089 / CB15) GN=CC_3395 PE=3 SV=1
Length = 195
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 29/110 (26%)
Query: 211 VLPGRPPPPECHAELHTD-----------YDGVAIRWGLTHHRDSAADCCQACIEQAKRA 259
VL G P E LHTD DGVA LT RD A D + I++ +++
Sbjct: 78 VLLGGPLERERGFVLHTDDFSSPDSTLPVADGVA----LTATRD-ALDAMASAIKRPRKS 132
Query: 260 ---------KPGQM----KCNIWVYCPAETGCHSPDKYEHKYQECWLKYA 296
PGQ+ + N+W+ C A+ G + +EHK+ K
Sbjct: 133 LLALGYAGWGPGQLEQELRDNVWLICDADEGLLFDEDHEHKWTRALAKLG 182
>sp|P89105|CTR9_YEAST RNA polymerase-associated protein CTR9 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CTR9 PE=1 SV=3
Length = 1077
Score = 33.1 bits (74), Expect = 3.1, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 25/129 (19%)
Query: 52 NDLKVVKYTPDQIRNMEESVRIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMI 111
NDLK P + +E+ +++ AL + +N ++EF +++S I
Sbjct: 864 NDLKEFNMIPKE--ELEQRIQLGETTMKSALERSLNE-QEEFEKEQSA----------KI 910
Query: 112 DEILRRLQSSDVKGNVSAQREAVESWRREKLEEAKQLSIGRQGINSTILQEEARMLVRVL 171
DE + L+ +++K + W +++ EEA++L + +Q LQ+EA+ L++
Sbjct: 911 DEARKILEENELKE---------QGWMKQE-EEARRLKLEKQAEEYRKLQDEAQKLIQ-- 958
Query: 172 ESDWAALSE 180
E + A+SE
Sbjct: 959 EREAMAISE 967
>sp|B8ETA0|ATKC_METSB Potassium-transporting ATPase C chain OS=Methylocella silvestris
(strain BL2 / DSM 15510 / NCIMB 13906) GN=kdpC PE=3 SV=1
Length = 200
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 62 DQIRNMEESVRIRSDNEPMALVKLV----NGLKQEFSRDESVFELPRAVKLRMIDE-ILR 116
D+++ E+++ + ++P+ + LV +GL S + ++F++PR K R + E LR
Sbjct: 108 DRVKTDAEALKAENPSQPVP-IDLVTTSGSGLDPHLSPEAALFQVPRVAKARGLSEDALR 166
Query: 117 RLQSSDVKG 125
RL S V+G
Sbjct: 167 RLVSEHVEG 175
>sp|P22338|POLG_LIV Genome polyprotein OS=Louping ill virus PE=3 SV=2
Length = 3414
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 29/157 (18%)
Query: 74 RSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQSSDVKGNVSAQREA 133
RS +EP+ +V ++ L R S L L + L L S K + A+
Sbjct: 1358 RSFSEPLTVVVVMLTLASGMMRHTSQEAL---CALAVASFFLLMLVSGTRKMQLVAEWSG 1414
Query: 134 VESWRREKLEEAKQLSI-----GRQGINSTILQEEARMLVRVLESD-------WAALSEE 181
W E + E ++S+ + T L++E RM+ L + W+ +
Sbjct: 1415 CVEWHPETVNEGGEISLRVRQDSMGNFHLTELEKEERMMAFWLLAGLVASALHWSGILGV 1474
Query: 182 IGLWIPTEIIH--------------KEHGDKPKGVED 204
+GLW TEI+ +E GD+P V+D
Sbjct: 1475 MGLWTLTEIMRSSRRSDLVYSGQGGQERGDRPFEVKD 1511
>sp|Q5V5T7|FEN_HALMA Flap endonuclease 1 OS=Haloarcula marismortui (strain ATCC 43049 /
DSM 3752 / JCM 8966 / VKM B-1809) GN=fen PE=3 SV=1
Length = 326
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 58 KYTPDQIRNMEESVRIRSDNEPMA-LVKLVNGLKQEFSRDES-VFELPRAVKLRMIDEI- 114
+Y ++ ES S+ E +A L+ +V GL + F D + VF AV DE+
Sbjct: 35 RYLTTTVKFTSESKYTTSNGEEVANLIGVVQGLPKFFEHDMTPVFVFDGAVTDLKDDEVE 94
Query: 115 LRRLQSSDVKGNVSAQREAVESWRREKLEEAKQ 147
RR Q + + A REA +S R KL+ Q
Sbjct: 95 KRREQRQKYESELEAAREAGDSTRVAKLDSRTQ 127
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,143,141
Number of Sequences: 539616
Number of extensions: 5598248
Number of successful extensions: 15860
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 15846
Number of HSP's gapped (non-prelim): 33
length of query: 331
length of database: 191,569,459
effective HSP length: 118
effective length of query: 213
effective length of database: 127,894,771
effective search space: 27241586223
effective search space used: 27241586223
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)