Query 020080
Match_columns 331
No_of_seqs 109 out of 119
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 11:28:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yil_A Microneme antigen L2; s 94.2 0.017 5.7E-07 49.4 1.8 65 208-297 68-133 (138)
2 2f83_A Coagulation factor XI; 93.7 0.06 2E-06 54.6 5.1 65 217-298 106-172 (625)
3 4a5v_A MIC4, micronemal protei 93.5 0.11 3.8E-06 44.7 5.7 67 208-298 70-138 (161)
4 2yil_A Microneme antigen L2; s 93.2 0.055 1.9E-06 46.2 3.4 51 226-297 12-62 (138)
5 4a5v_A MIC4, micronemal protei 92.8 0.15 5.1E-06 43.9 5.5 56 219-297 9-64 (161)
6 2f83_A Coagulation factor XI; 92.1 0.12 4E-06 52.5 4.6 65 217-297 16-82 (625)
7 2ll3_A Micronemal protein 4; c 41.7 14 0.00046 29.1 2.2 38 238-296 25-62 (82)
8 2gol_A Matrix protein P17 (MA) 39.1 21 0.0007 30.7 3.1 32 26-69 76-107 (133)
9 2dq0_A Seryl-tRNA synthetase; 36.8 1.6E+02 0.0056 28.9 9.7 53 64-116 11-63 (455)
10 1n81_A Plasmodium falciparum g 32.4 49 0.0017 29.5 4.6 37 86-126 57-93 (186)
11 3qne_A Seryl-tRNA synthetase, 32.1 3.3E+02 0.011 27.3 11.1 51 64-116 15-65 (485)
12 1upt_B Golgi autoantigen, golg 25.7 32 0.0011 25.9 1.8 21 56-76 33-53 (60)
13 2b5u_A Colicin E3; high resolu 24.4 67 0.0023 33.1 4.4 48 58-105 290-342 (551)
14 3vou_A ION transport 2 domain 24.3 92 0.0032 25.4 4.7 32 64-95 107-138 (148)
15 2dq3_A Seryl-tRNA synthetase; 24.0 2E+02 0.0067 28.0 7.6 31 64-95 11-41 (425)
16 4aj5_K Spindle and kinetochore 23.7 74 0.0025 27.0 3.9 19 77-95 43-61 (123)
17 1rh1_A Colicin B; FEPA, cytoto 23.1 4.1E+02 0.014 27.2 9.7 107 59-181 289-407 (511)
18 1wle_A Seryl-tRNA synthetase; 22.4 5.8E+02 0.02 25.5 10.9 56 61-116 47-102 (501)
19 3hms_A Hepatocyte growth facto 21.4 77 0.0026 25.7 3.5 30 240-274 37-67 (101)
20 1zav_U 50S ribosomal protein L 20.8 54 0.0018 21.3 2.0 19 75-93 11-29 (30)
21 3vgj_A Tyrosyl-tRNA synthetase 20.8 1.2E+02 0.0042 29.1 5.4 52 86-147 317-368 (373)
22 1ed1_A GAG polyprotein, SIV MA 20.7 78 0.0027 27.2 3.5 33 26-70 75-107 (135)
No 1
>2yil_A Microneme antigen L2; sugar binding protein, apple-domain tandem repeat, PAN_AP, P galactose-binding lectin, cellular adhesion; 1.95A {Sarcocystis muris} PDB: 2yio_A* 2yip_A*
Probab=94.15 E-value=0.017 Score=49.37 Aligned_cols=65 Identities=14% Similarity=0.248 Sum_probs=48.6
Q ss_pred ccccCCCCCCCC-ccccccccccCccccccCCccccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccCC
Q 020080 208 DEDVLPGRPPPP-ECHAELHTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEH 286 (331)
Q Consensus 208 ~~~~~~g~p~~~-~C~~e~htdy~G~aV~WG~~~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWV~C~~~~GC~spd~y~~ 286 (331)
..+++.|...++ .| .+.+.||.|..+.- ......|+.+|.++|.+ +.+|..|.|=.
T Consensus 68 ~~g~vSGpk~C~~~C-~~~~vdy~G~d~~~-~~~s~~~a~~CQ~~C~~--------~~~C~~fTf~~------------- 124 (138)
T 2yil_A 68 YTGDMTGPRSCEHNC-SDACWMDGNNPLAV-WDYSGQPPALCWAACMG--------TPGCDLYTFQG------------- 124 (138)
T ss_dssp CTTEEEEESCTTCCC-CSSEETTCCCCSEE-EECTTCCTHHHHHHHHT--------STTCCEEECGG-------------
T ss_pred cCCceecCCcCcccH-HhcCCCccCccccc-cccccCCHHHHHHHhCC--------CCCCcEEEEeC-------------
Confidence 457777744333 66 78999999987754 33444689999999997 46899999854
Q ss_pred CCccccccccC
Q 020080 287 KYQECWLKYAE 297 (331)
Q Consensus 287 ~~geCWLK~~~ 297 (331)
+.||||..+
T Consensus 125 --~tC~lk~~d 133 (138)
T 2yil_A 125 --MTCKLYSQT 133 (138)
T ss_dssp --GEEEEECCC
T ss_pred --CeeEEECCc
Confidence 489999764
No 2
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Probab=93.68 E-value=0.06 Score=54.63 Aligned_cols=65 Identities=20% Similarity=0.476 Sum_probs=48.0
Q ss_pred CCCccc--cccccccCccccccCCccccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccCCCCcccccc
Q 020080 217 PPPECH--AELHTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLK 294 (331)
Q Consensus 217 ~~~~C~--~e~htdy~G~aV~WG~~~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWV~C~~~~GC~spd~y~~~~geCWLK 294 (331)
.++.|+ .+.++||.|.-+. .....|+++||..|.++ .+|-.|.|=+...- + ....+.||||
T Consensus 106 ~~~~C~~~~~~~~d~~G~d~~---~~~~~s~~~C~~~C~~~--------~~C~~fTy~~~~~~--~----~~~~~~C~LK 168 (625)
T 2f83_A 106 QISACNKDIYVDLDMKGINYN---SSVAKSAQECQERCTDD--------VHCHFFTYATRQFP--S----LEHRNICLLK 168 (625)
T ss_dssp CCCCCCCCCEEEEEEECEEEE---EEECSCHHHHHHHHHTS--------SSCSEEEEECSSCS--C----SSSTTEEEEE
T ss_pred ChhcCchhhccccceecceee---eEeeCCHHHHHHhccCC--------CCCcEEEecCCccc--C----CCCCceeEec
Confidence 455786 4589999997654 25678999999999984 68999999775421 1 1245789999
Q ss_pred ccCC
Q 020080 295 YAEK 298 (331)
Q Consensus 295 ~~~~ 298 (331)
....
T Consensus 169 ~s~~ 172 (625)
T 2f83_A 169 HTQT 172 (625)
T ss_dssp ECSS
T ss_pred cCcC
Confidence 9754
No 3
>4a5v_A MIC4, micronemal protein 4; adhesion; NMR {Toxoplasma gondii}
Probab=93.46 E-value=0.11 Score=44.69 Aligned_cols=67 Identities=22% Similarity=0.385 Sum_probs=48.6
Q ss_pred ccccCCCCC-CCCccccccccccCcc-ccccCCccccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccC
Q 020080 208 DEDVLPGRP-PPPECHAELHTDYDGV-AIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYE 285 (331)
Q Consensus 208 ~~~~~~g~p-~~~~C~~e~htdy~G~-aV~WG~~~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWV~C~~~~GC~spd~y~ 285 (331)
..+++-|.. -++.|+. .++||.|. -|. ......++.+|+++|.+ ..+|..|.|=.
T Consensus 70 ~~g~iSG~k~C~~~C~~-~~vD~~G~~dl~--~~~~~~s~~~Cq~~C~~--------~~~C~~fTy~~------------ 126 (161)
T 4a5v_A 70 LTGGKTASRSCDRSCFE-QHVSYEGAPDVM--TAMVTSQSADCQAACAA--------DPSCEIFTYNE------------ 126 (161)
T ss_dssp CTTEEEEESCCCCTTCE-ESEEECSSCBSS--CCCBCSCHHHHHHHHHH--------CTTCCEEEEET------------
T ss_pred cCCceeCCCcCCcchhh-CCCcccCchhcc--ccccCCCHHHHHHHccc--------CCCCCEEEeeC------------
Confidence 345555621 2236766 89999998 442 23567899999999998 46899999973
Q ss_pred CCCccccccccCC
Q 020080 286 HKYQECWLKYAEK 298 (331)
Q Consensus 286 ~~~geCWLK~~~~ 298 (331)
..+.||||....
T Consensus 127 -~~~~C~LK~~~~ 138 (161)
T 4a5v_A 127 -HDQKCTFKGRGF 138 (161)
T ss_dssp -TTTEEEEECTTT
T ss_pred -CCCeeEeCCCCC
Confidence 357999998864
No 4
>2yil_A Microneme antigen L2; sugar binding protein, apple-domain tandem repeat, PAN_AP, P galactose-binding lectin, cellular adhesion; 1.95A {Sarcocystis muris} PDB: 2yio_A* 2yip_A*
Probab=93.24 E-value=0.055 Score=46.15 Aligned_cols=51 Identities=25% Similarity=0.402 Sum_probs=37.0
Q ss_pred ccccCccccccCCccccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccCCCCccccccccC
Q 020080 226 HTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYAE 297 (331)
Q Consensus 226 htdy~G~aV~WG~~~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWV~C~~~~GC~spd~y~~~~geCWLK~~~ 297 (331)
|...+|..+.--..-.+.|+++|.+.|+++ .+|..|.|=.+ -+.||||...
T Consensus 12 h~~n~G~~~~~i~~~~v~Sa~~Cq~~C~~~--------~~C~~FTf~~~-------------~k~C~LK~~~ 62 (138)
T 2yil_A 12 HDKNIGSRTEQLSVVHVASAQDCMKECQAL--------PTCSHFTYNKN-------------SKKCHLKAGA 62 (138)
T ss_dssp SSSCEEECSCEEEEEECSSHHHHHHHHHHS--------TTCCEEEEETT-------------TCEEEEECSC
T ss_pred ccCccCcchhcccccCCCCHHHHHHHccCC--------CCCCEEEEECC-------------CCEEEeccCc
Confidence 444555544322355679999999999985 58999999554 2689999753
No 5
>4a5v_A MIC4, micronemal protein 4; adhesion; NMR {Toxoplasma gondii}
Probab=92.76 E-value=0.15 Score=43.89 Aligned_cols=56 Identities=18% Similarity=0.305 Sum_probs=44.9
Q ss_pred CccccccccccCccccccCCccccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccCCCCccccccccC
Q 020080 219 PECHAELHTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYAE 297 (331)
Q Consensus 219 ~~C~~e~htdy~G~aV~WG~~~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWV~C~~~~GC~spd~y~~~~geCWLK~~~ 297 (331)
-.|--..|..|.|-.| +......|+.+||..|..+ .+|..|+|=.. .+.||||...
T Consensus 9 ~~c~~~~n~~~~g~~i--~~~~~~~s~~~Cq~~C~~~--------p~C~~fTf~~~-------------~~~C~LK~s~ 64 (161)
T 4a5v_A 9 LSCVHSDNKGSRAPTI--GEPVPDVSLEQCAAQCKAV--------DGCTHFTYNDD-------------SKMCHVKEGK 64 (161)
T ss_dssp CSSCCCSSEEECSCBC--SCCBTTCCHHHHHHHHHHS--------TTCSEEEEETT-------------TCCEEEECSS
T ss_pred eeEEcCCCccccCCCe--eeeecCCCHHHHHHHCcCC--------CCCcEEEEECC-------------CCEEEEeCCC
Confidence 4677777888887776 3566889999999999995 58999999743 3689999765
No 6
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Probab=92.12 E-value=0.12 Score=52.51 Aligned_cols=65 Identities=22% Similarity=0.376 Sum_probs=45.4
Q ss_pred CCCcccc--ccccccCccccccCCccccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccCCCCcccccc
Q 020080 217 PPPECHA--ELHTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLK 294 (331)
Q Consensus 217 ~~~~C~~--e~htdy~G~aV~WG~~~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWV~C~~~~GC~spd~y~~~~geCWLK 294 (331)
+..+|.. .+++||.|..+. .-...+|++||..|..+ .+|..|.|=....+=.. .+..-||||
T Consensus 16 ~~~~c~~~~~~~~d~~G~d~~---~v~~~~~~~C~~~C~~~--------~~C~~ft~~~~~~~~~~-----~~~~~C~LK 79 (625)
T 2f83_A 16 VSGECVTQLLKDTCFEGGDIT---TVFTPSAKYCQVVCTYH--------PRCLLFTFTAESPSEDP-----TRWFTCVLK 79 (625)
T ss_dssp ----CCCSCEEEEEECSCEEE---EEECSSHHHHHHHHHHS--------SSCCEEEEECCCTTSCS-----TTTTEEEEE
T ss_pred hccchhhhhcccccccCCcee---EEecCCHHHHHHhccCC--------CCeeEEEEeCCCCCccc-----cccceEEec
Confidence 4556754 589999999876 33356899999999995 58999999987532111 134679999
Q ss_pred ccC
Q 020080 295 YAE 297 (331)
Q Consensus 295 ~~~ 297 (331)
-..
T Consensus 80 ~~~ 82 (625)
T 2f83_A 80 DSV 82 (625)
T ss_dssp CCG
T ss_pred ccc
Confidence 754
No 7
>2ll3_A Micronemal protein 4; cell adhesion; NMR {Toxoplasma gondii} PDB: 2ll4_M*
Probab=41.65 E-value=14 Score=29.10 Aligned_cols=38 Identities=18% Similarity=0.461 Sum_probs=30.5
Q ss_pred CccccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccCCCCcccccccc
Q 020080 238 LTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYA 296 (331)
Q Consensus 238 ~~~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWV~C~~~~GC~spd~y~~~~geCWLK~~ 296 (331)
......|.++|..+|+. ...|..++|-... +-|+||..
T Consensus 25 ~~~~~~sl~~Cq~aC~a--------~~~C~aFTyN~~s-------------~~CflKs~ 62 (82)
T 2ll3_A 25 EVKRASSLSECRARCQA--------EKECSHYTYNVKS-------------GLCYPKRG 62 (82)
T ss_dssp SCEECSSHHHHHHHHHH--------CTTEEEEEEETTT-------------TEEEEEES
T ss_pred ccccCCCHHHHHHHhhc--------cCCCCeEEeccCC-------------CceEcccC
Confidence 34467889999999998 4689999998763 68889964
No 8
>2gol_A Matrix protein P17 (MA); viral maturation, immature, GAG, HIV-1, viral protein; 2.20A {Human immunodeficiency virus 1} SCOP: a.61.1.1 PDB: 1hiw_A 2hmx_A 2h3f_A 2h3i_A* 2h3q_A* 2h3v_A* 2h3z_A* 1uph_A* 2nv3_A* 2jmg_A* 1tam_A
Probab=39.13 E-value=21 Score=30.69 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHhhhhcccccccCCccccccCHHHHHHHHH
Q 020080 26 IICFINIVIALYVLRSIYASIYVFSRNDLKVVKYTPDQIRNMEE 69 (331)
Q Consensus 26 ~vC~~Ni~~aL~vL~sl~ss~~~~s~~~~~~~~y~~~Qlr~ieE 69 (331)
+-.+||.|++||.+|.= --|+.|.|-|.+|||
T Consensus 76 LkSL~NtvatLyCVHq~------------I~VkDTkEAldkiee 107 (133)
T 2gol_A 76 LRSLYNTIAVLYCVHQR------------IDVKDTKEALDKIEE 107 (133)
T ss_dssp THHHHHHHHHHHHHHTT------------CCCSBHHHHHHHHHH
T ss_pred HHHHHhhhhheeeeeec------------eeeccHHHHHHHHHH
Confidence 44689999999999963 356779999999987
No 9
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=36.85 E-value=1.6e+02 Score=28.91 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhcccccccccHHHHhHHHHHHHH
Q 020080 64 IRNMEESVRIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILR 116 (331)
Q Consensus 64 lr~ieES~riRra~ePveLIkrVKei~~E~~~e~~~~~lp~~~kQk~a~ei~q 116 (331)
...+.++.+-|.....++++..|.++.++...-....+..+.-+-+++.+|.+
T Consensus 11 ~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~ 63 (455)
T 2dq0_A 11 PELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGK 63 (455)
T ss_dssp HHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888742216677777777666554333333333445555556555
No 10
>1n81_A Plasmodium falciparum gamete antigen 27/25; gametocyte, helical, helix-turn-helix, PXXP, unknown functio; 2.10A {Plasmodium falciparum} SCOP: a.185.1.1
Probab=32.39 E-value=49 Score=29.49 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=29.2
Q ss_pred HHHHHHhhhcccccccccHHHHhHHHHHHHHHhhhcccCCC
Q 020080 86 VNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQSSDVKGN 126 (331)
Q Consensus 86 VKei~~E~~~e~~~~~lp~~~kQk~a~ei~qRL~dl~~~sn 126 (331)
|.|=|++.. -..||.++|-.+|.-||.||+|+...-.
T Consensus 57 ~~knqn~~~----~~~lp~ei~dsmalRISdRLr~ycfdk~ 93 (186)
T 1n81_A 57 VRKNQNRYN----YFLIEERVQDNIVNRISDRLISYCTDKE 93 (186)
T ss_dssp HHHHHHHTT----CCCCCHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHhhhhhh----hhcCcHHHHHHHHHHHHHHHHHHHccch
Confidence 344454443 3579999999999999999999987665
No 11
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=32.09 E-value=3.3e+02 Score=27.30 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhcccccccccHHHHhHHHHHHHH
Q 020080 64 IRNMEESVRIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILR 116 (331)
Q Consensus 64 lr~ieES~riRra~ePveLIkrVKei~~E~~~e~~~~~lp~~~kQk~a~ei~q 116 (331)
...++++.+-|.. +++++..|.+|.++-..-....+..+.-+-.++.+|.+
T Consensus 15 ~~~v~~~~~~R~~--~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 65 (485)
T 3qne_A 15 PEIIKASQKKRGD--SVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGK 65 (485)
T ss_dssp HHHHHHHHHHHTC--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788887764 45667777777655433222222233334445556655
No 12
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=25.70 E-value=32 Score=25.89 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=18.8
Q ss_pred ccccCHHHHHHHHHHHHHHhc
Q 020080 56 VVKYTPDQIRNMEESVRIRSD 76 (331)
Q Consensus 56 ~~~y~~~Qlr~ieES~riRra 76 (331)
+.+|+++|.+.|-+.++-|..
T Consensus 33 vL~Fs~~e~q~il~~e~~r~~ 53 (60)
T 1upt_B 33 VLKFPDDQTQKILEREDARLM 53 (60)
T ss_dssp HTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHhcccc
Confidence 679999999999999998864
No 13
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=24.39 E-value=67 Score=33.08 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=31.7
Q ss_pred ccCHHHH-HHHHHHHHHHhcc---CcHHHHHH-HHHHHHhhhcccccccccHH
Q 020080 58 KYTPDQI-RNMEESVRIRSDN---EPMALVKL-VNGLKQEFSRDESVFELPRA 105 (331)
Q Consensus 58 ~y~~~Ql-r~ieES~riRra~---ePveLIkr-VKei~~E~~~e~~~~~lp~~ 105 (331)
-++++|+ +++||++|.+++. .|++--+| .-++++|+...++.++..++
T Consensus 290 ilt~~elkqrqeee~r~~qew~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~e 342 (551)
T 2b5u_A 290 VLSPDQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQE 342 (551)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688888 6899999999876 78776665 33455666655553333333
No 14
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=24.26 E-value=92 Score=25.37 Aligned_cols=32 Identities=3% Similarity=0.248 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhc
Q 020080 64 IRNMEESVRIRSDNEPMALVKLVNGLKQEFSR 95 (331)
Q Consensus 64 lr~ieES~riRra~ePveLIkrVKei~~E~~~ 95 (331)
++.+.+..+.+....-.+..++.++|++....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~rl~~i~~~~~~ 138 (148)
T 3vou_A 107 LPSILSNRKKETDAYRLEVMEKLEAIEKKLAE 138 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555555567888888888887774
No 15
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=23.98 E-value=2e+02 Score=27.96 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhc
Q 020080 64 IRNMEESVRIRSDNEPMALVKLVNGLKQEFSR 95 (331)
Q Consensus 64 lr~ieES~riRra~ePveLIkrVKei~~E~~~ 95 (331)
...+.++.+-|..-. ++++..|.++.++...
T Consensus 11 ~~~~~~~~~~r~~~~-~~~~~~~~~~~~~~r~ 41 (425)
T 2dq3_A 11 PDYVKERLATRDKEL-VSLVDKVLELDKRRRE 41 (425)
T ss_dssp HHHHHHHHTTTCGGG-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCc-hhhHHHHHHHHHHHHH
Confidence 456677887776421 6677777777665543
No 16
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=23.73 E-value=74 Score=26.95 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=16.4
Q ss_pred cCcHHHHHHHHHHHHhhhc
Q 020080 77 NEPMALVKLVNGLKQEFSR 95 (331)
Q Consensus 77 ~ePveLIkrVKei~~E~~~ 95 (331)
-.||.|++++|.|+.+...
T Consensus 43 ~NPv~Ll~~LsaIk~ry~~ 61 (123)
T 4aj5_K 43 KNPVTLLKELSVIKSRYQT 61 (123)
T ss_dssp CTTHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHH
Confidence 3899999999999988764
No 17
>1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic; 2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1
Probab=23.10 E-value=4.1e+02 Score=27.16 Aligned_cols=107 Identities=11% Similarity=0.140 Sum_probs=62.2
Q ss_pred cCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhcccccccccHHHH-----------hHHHHHHHHHhhhcccCCCh
Q 020080 59 YTPDQIRNMEESVRIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVK-----------LRMIDEILRRLQSSDVKGNV 127 (331)
Q Consensus 59 y~~~Qlr~ieES~riRra~ePveLIkrVKei~~E~~~e~~~~~lp~~~k-----------Qk~a~ei~qRL~dl~~~sn~ 127 (331)
.+.+||+...|.+.-|+. =.+|.+.-+.+|+|+..... +.=-.+= .++|.||++-|++++ .-.+
T Consensus 289 ~~~~eLsQrQeaen~~kk--~f~~k~~~~~~ek~~Lk~as--Eii~s~gekise~~G~Kyk~lAkeIA~~lkn~K-GKkI 363 (511)
T 1rh1_A 289 LDSNSLSQRQEAENNAKD--DFRVKKEQENDEKTVLTKTS--EVIISVGDKVGEYLGDKYKALSREIAENINNFQ-GKTI 363 (511)
T ss_dssp CBHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCT-TCCC
T ss_pred CChhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-Ccee
Confidence 679999987776644442 34567777777877765433 2212222 245788888887775 3333
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcccCccccchHHHHHHHHHHHhh-hHHHHHhh
Q 020080 128 SAQREAVESWRREKLEEAKQLSIGRQGINSTILQEEARMLVRVLES-DWAALSEE 181 (331)
Q Consensus 128 ~~qrealE~WRkeKLe~ak~r~~~k~gsns~~~~~e~~~l~~~~e~-~w~~~~e~ 181 (331)
-.--|||.+ +|+.+ +..|..++..+-.-++.|||+ |-+.+.+.
T Consensus 364 RnvdDAL~s-----feKyk------~nlnkK~nakDR~AI~nALesvd~~~mAkN 407 (511)
T 1rh1_A 364 RSYDDAMSS-----INKLM------ANPSLKINATDKEAIVNAWKAFNAEDMGNK 407 (511)
T ss_dssp CCHHHHHHH-----HHHHT------TCTTCCCCHHHHHHHHHHHHHCCHHHHHHT
T ss_pred cCHHHHHHH-----HHHHH------hchhhccccccHHHHHHHHHhcCHHHHHHH
Confidence 333456653 22222 245666777777777777754 44444444
No 18
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=22.36 E-value=5.8e+02 Score=25.48 Aligned_cols=56 Identities=7% Similarity=-0.039 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhcccccccccHHHHhHHHHHHHH
Q 020080 61 PDQIRNMEESVRIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILR 116 (331)
Q Consensus 61 ~~Qlr~ieES~riRra~ePveLIkrVKei~~E~~~e~~~~~lp~~~kQk~a~ei~q 116 (331)
-+....+.++.+-|+.-.++++|..|.++.++...-....+..+.-+-+++.+|.+
T Consensus 47 r~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 102 (501)
T 1wle_A 47 CAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRA 102 (501)
T ss_dssp HHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888754345667777777655543322223333444455555555
No 19
>3hms_A Hepatocyte growth factor; HGF/SF, hormone/growth factor, disulfide bond, glycoprotein, kringle, pyrrolidone carboxylic acid, serine protea homolog; 1.70A {Homo sapiens} SCOP: g.10.1.1 PDB: 3hmt_A 2hgf_A 3hmr_A
Probab=21.40 E-value=77 Score=25.65 Aligned_cols=30 Identities=23% Similarity=0.664 Sum_probs=22.5
Q ss_pred cccCCHHHHHHHHHHhhhhcCCC-CCCCceeEECCC
Q 020080 240 HHRDSAADCCQACIEQAKRAKPG-QMKCNIWVYCPA 274 (331)
Q Consensus 240 ~~~~SA~eCC~AC~~~~~~~~~g-~~~CNvWV~C~~ 274 (331)
-.+.|+++|...|.+- -| +..|-+|.|=..
T Consensus 37 ~~~~s~eeCA~kC~~~-----~~~~F~CRAF~y~~k 67 (101)
T 3hms_A 37 KKVNTADQCANRCTRN-----KGLPFTCKAFVFDKA 67 (101)
T ss_dssp EECSCHHHHHHHHHHC-----TTCSSCCCEEEEETT
T ss_pred eccCCHHHHHHHHHhc-----cCCCcceeeeEEecC
Confidence 4568999999999972 11 468999988654
No 20
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=20.83 E-value=54 Score=21.25 Aligned_cols=19 Identities=26% Similarity=0.372 Sum_probs=15.4
Q ss_pred hccCcHHHHHHHHHHHHhh
Q 020080 75 SDNEPMALVKLVNGLKQEF 93 (331)
Q Consensus 75 ra~ePveLIkrVKei~~E~ 93 (331)
..|-=.||.++||.||.+|
T Consensus 11 ~~lTvlEl~eLvk~lEe~f 29 (30)
T 1zav_U 11 EKLTVSELAELVKKLEDKF 29 (30)
T ss_dssp HHSBHHHHHHHHHHHHHHT
T ss_pred HhCcHHHHHHHHHHHHHHh
Confidence 3566678999999999887
No 21
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=20.80 E-value=1.2e+02 Score=29.09 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=35.0
Q ss_pred HHHHHHhhhcccccccccHHHHhHHHHHHHHHhhhcccCCChhHHHHHHHHHHHHHHHHHHh
Q 020080 86 VNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQSSDVKGNVSAQREAVESWRREKLEEAKQ 147 (331)
Q Consensus 86 VKei~~E~~~e~~~~~lp~~~kQk~a~ei~qRL~dl~~~sn~~~qrealE~WRkeKLe~ak~ 147 (331)
+.+|++++..+. -.|.++|+.+|+.|...|.-+++ -.+..++|+ +.|+++|+
T Consensus 317 ~eel~~~~~~g~---l~~~dlK~~lae~i~~~l~Pire------~~~~~~~~~-~~l~~v~~ 368 (373)
T 3vgj_A 317 LQELEHDYVNGF---IHPLDLKDNVAMYINKLLQPVRD------HFQNNIEAK-NLLNEIKK 368 (373)
T ss_dssp HHHHHHHHHTTS---SCHHHHHHHHHHHHHHHHHHHHH------HHHHCHHHH-HHHHHHHH
T ss_pred HHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHHHH------HHHhChhHH-HHHHHHHh
Confidence 456666665421 25899999999999999998873 223345554 45666665
No 22
>1ed1_A GAG polyprotein, SIV MA; trimeric association, viral protein; 2.10A {Simian immunodeficiency virus - mac} SCOP: a.61.1.1 PDB: 1ecw_A 2k4e_A 2k4h_A* 2k4i_A*
Probab=20.70 E-value=78 Score=27.18 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHhhhhcccccccCCccccccCHHHHHHHHHH
Q 020080 26 IICFINIVIALYVLRSIYASIYVFSRNDLKVVKYTPDQIRNMEES 70 (331)
Q Consensus 26 ~vC~~Ni~~aL~vL~sl~ss~~~~s~~~~~~~~y~~~Qlr~ieES 70 (331)
+-.+||.+++||.+|.=+ -|+.|.|-+.+||+-
T Consensus 75 LkSL~ntva~LyCvH~~i------------~VkDTkEAl~kie~~ 107 (135)
T 1ed1_A 75 LKSLYNTVCVIWCIHAEE------------KVKHTEEAKQIVQRH 107 (135)
T ss_dssp HHHHHHHHHHHHHHHTTC------------CCSBHHHHHHHHHHH
T ss_pred hhhhhhhhheeeEeEeee------------eeccHHHHHHHHHHH
Confidence 457899999999999622 456688888888864
Done!