Query 020080
Match_columns 331
No_of_seqs 109 out of 119
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 11:29:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020080.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020080hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eo0a_ a.48.3.1 (A:) Transcri 52.2 11 0.00077 27.5 5.0 27 113-139 45-74 (77)
2 d1dd3a1 a.108.1.1 (A:1-57) Rib 37.6 15 0.0011 25.6 3.6 25 71-95 7-31 (57)
3 d2gola1 a.61.1.1 (A:7-107) HIV 33.5 17 0.0013 27.9 3.7 31 27-69 70-100 (101)
4 d1n81a_ a.185.1.1 (A:) Gametoc 32.8 23 0.0017 29.6 4.6 37 86-126 57-93 (186)
5 d2qj2a1 g.10.1.1 (A:36-126) He 26.1 22 0.0016 26.1 3.1 41 240-297 27-67 (91)
6 d1zavu1 a.108.1.1 (U:1-30) Rib 18.3 60 0.0044 19.6 3.3 17 77-93 13-29 (30)
7 d1x41a1 a.4.1.1 (A:8-54) Trans 17.7 46 0.0034 21.2 2.9 25 160-184 5-33 (47)
8 d3bnea2 b.12.1.1 (A:7-149) Pla 17.7 13 0.00093 30.0 0.0 27 175-202 23-49 (143)
9 d1v54j_ f.23.4.1 (J:) Mitochon 17.4 33 0.0024 23.9 2.2 18 22-39 33-50 (58)
10 d2b7va1 d.50.1.1 (A:1-71) dsRN 16.4 36 0.0026 23.4 2.3 22 101-122 49-70 (71)
No 1
>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS N-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=52.16 E-value=11 Score=27.46 Aligned_cols=27 Identities=11% Similarity=0.266 Sum_probs=14.6
Q ss_pred HHHHHhhhcccCCC---hhHHHHHHHHHHH
Q 020080 113 EILRRLQSSDVKGN---VSAQREAVESWRR 139 (331)
Q Consensus 113 ei~qRL~dl~~~sn---~~~qrealE~WRk 139 (331)
.|-+..+.|+..+| ...-++-++.|++
T Consensus 45 ~iG~~Vn~LRkh~~~~v~~lAk~Lv~~WK~ 74 (77)
T d1eo0a_ 45 KVGVEVNKFKKSTNVEISKLVKKMISSWKD 74 (77)
T ss_dssp HHHHHHHHCCSSSCTTHHHHHHHHHHHHHH
T ss_pred CccHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 34445555555544 3334445888875
No 2
>d1dd3a1 a.108.1.1 (A:1-57) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=37.64 E-value=15 Score=25.58 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=20.5
Q ss_pred HHHHhccCcHHHHHHHHHHHHhhhc
Q 020080 71 VRIRSDNEPMALVKLVNGLKQEFSR 95 (331)
Q Consensus 71 ~riRra~ePveLIkrVKei~~E~~~ 95 (331)
++.=..|-=.||.++||.||.+|-.
T Consensus 7 ie~I~~~tv~El~ELvKalEekfGV 31 (57)
T d1dd3a1 7 IEAIEKLTVSELAELVKKLEDKFGV 31 (57)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHCH
T ss_pred HHHHHhccHHHHHHHHHHHHHHhCc
Confidence 4445678889999999999999974
No 3
>d2gola1 a.61.1.1 (A:7-107) HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=33.47 E-value=17 Score=27.89 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhhhhcccccccCCccccccCHHHHHHHHH
Q 020080 27 ICFINIVIALYVLRSIYASIYVFSRNDLKVVKYTPDQIRNMEE 69 (331)
Q Consensus 27 vC~~Ni~~aL~vL~sl~ss~~~~s~~~~~~~~y~~~Qlr~ieE 69 (331)
-.+||++++||.+|.=+ -|+.|.|-+.+|||
T Consensus 70 kSL~ntvavLyCVH~~I------------~VkDTkEAl~kiee 100 (101)
T d2gola1 70 RSLYNTIAVLYCVHQRI------------DVKDTKEALDKIEE 100 (101)
T ss_dssp HHHHHHHHHHHHHHTTC------------CCSBHHHHHHHHHH
T ss_pred HhHhhceeeEEEEecCc------------ccCchHHHHHHHhc
Confidence 46899999999998732 45668888999887
No 4
>d1n81a_ a.185.1.1 (A:) Gametocyte protein Pfg27 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=32.79 E-value=23 Score=29.55 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=29.2
Q ss_pred HHHHHHhhhcccccccccHHHHhHHHHHHHHHhhhcccCCC
Q 020080 86 VNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQSSDVKGN 126 (331)
Q Consensus 86 VKei~~E~~~e~~~~~lp~~~kQk~a~ei~qRL~dl~~~sn 126 (331)
|.|=|++.. -..||.++|-.+|.-||.||+|+...-.
T Consensus 57 ~~knqn~~~----~~~lp~ei~dsmalRISdRLr~ycfdk~ 93 (186)
T d1n81a_ 57 VRKNQNRYN----YFLIEERVQDNIVNRISDRLISYCTDKE 93 (186)
T ss_dssp HHHHHHHTT----CCCCCHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHhhhhhh----hhcCcHHHHHHHHHHHHHHHHHHHccch
Confidence 344454443 3579999999999999999999987665
No 5
>d2qj2a1 g.10.1.1 (A:36-126) Hepatocyte growth factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.08 E-value=22 Score=26.07 Aligned_cols=41 Identities=17% Similarity=0.422 Sum_probs=29.2
Q ss_pred cccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccCCCCccccccccC
Q 020080 240 HHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYAE 297 (331)
Q Consensus 240 ~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWV~C~~~~GC~spd~y~~~~geCWLK~~~ 297 (331)
..+.|+++|-+.|.+- +.....|-++.|=. ..+.|+|-...
T Consensus 27 ~~~~s~eeCA~rC~~~----~~~~f~CrSF~y~~-------------~~~~C~Ls~~n 67 (91)
T d2qj2a1 27 KKVNTADQCANRCTRN----KGLPFTCKAFVFDK-------------ARKQCLWFPFN 67 (91)
T ss_dssp EECSCHHHHHHHHHTT----TTCSSCCCEEEEET-------------TTTEEEEESSC
T ss_pred cccCCHHHHHHHHHcc----CCCCceEEeEEEEC-------------CCCeEEEcccc
Confidence 3467999999999862 22345688887743 56899998653
No 6
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=18.27 E-value=60 Score=19.65 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=12.7
Q ss_pred cCcHHHHHHHHHHHHhh
Q 020080 77 NEPMALVKLVNGLKQEF 93 (331)
Q Consensus 77 ~ePveLIkrVKei~~E~ 93 (331)
+---||-++||.||..|
T Consensus 13 ltvaelaelvk~ledkf 29 (30)
T d1zavu1 13 LTVSELAELVKKLEDKF 29 (30)
T ss_dssp SBHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHhhc
Confidence 44557888889988765
No 7
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.74 E-value=46 Score=21.17 Aligned_cols=25 Identities=12% Similarity=0.356 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHH----hhhHHHHHhhhcc
Q 020080 160 LQEEARMLVRVL----ESDWAALSEEIGL 184 (331)
Q Consensus 160 ~~~e~~~l~~~~----e~~w~~~~e~~g~ 184 (331)
+.||-.+|..++ ..||..+++.||-
T Consensus 5 t~eEd~~L~~~v~~~G~~nW~~Ia~~~~~ 33 (47)
T d1x41a1 5 TAQEEMALLEAVMDCGFGNWQDVANQMCT 33 (47)
T ss_dssp CHHHHHHHHHHHHHTCTTCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHCCccHHHHHHHcCC
Confidence 467777888887 4589999999864
No 8
>d3bnea2 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Glycine max), isozyme L1 [TaxId: 3847]}
Probab=17.67 E-value=13 Score=30.04 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=18.2
Q ss_pred HHHHHhhhcccccceeeeccCCCCCCCC
Q 020080 175 WAALSEEIGLWIPTEIIHKEHGDKPKGV 202 (331)
Q Consensus 175 w~~~~e~~g~~~p~~~~~~~~~~k~~~~ 202 (331)
.|.+.|=||=-+--+++..+++| |.+.
T Consensus 23 lD~~~el~Gk~V~lqLVS~~~~d-~~g~ 49 (143)
T d3bnea2 23 VDNLNAFLGRSVSLQLISATKAD-AHGK 49 (143)
T ss_dssp --CGGGGSTTSEEEEEEEEEEEC-TTSC
T ss_pred hhhhhHhhCCcEEEEEEEeeccC-CCCC
Confidence 45566668888888888888777 3444
No 9
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=17.39 E-value=33 Score=23.85 Aligned_cols=18 Identities=28% Similarity=0.685 Sum_probs=13.8
Q ss_pred cchhhHHHHHHHHHHHHH
Q 020080 22 KTTLIICFINIVIALYVL 39 (331)
Q Consensus 22 raTv~vC~~Ni~~aL~vL 39 (331)
|+|+++|++-++-++|.|
T Consensus 33 r~Tm~L~~~G~~~s~~~l 50 (58)
T d1v54j_ 33 RVTMTLCLGGTLYSLYCL 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 689999987777666644
No 10
>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=16.36 E-value=36 Score=23.36 Aligned_cols=22 Identities=14% Similarity=0.086 Sum_probs=19.1
Q ss_pred cccHHHHhHHHHHHHHHhhhcc
Q 020080 101 ELPRAVKLRMIDEILRRLQSSD 122 (331)
Q Consensus 101 ~lp~~~kQk~a~ei~qRL~dl~ 122 (331)
.-.+++||++|...++.|.+|+
T Consensus 49 ~SKK~Ak~~AA~~aL~~L~~~~ 70 (71)
T d2b7va1 49 RNKKLAKARAAQSALATVFNLH 70 (71)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHccC
Confidence 3567999999999999999885
Done!