BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020081
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/93 (64%), Positives = 71/93 (76%)
Query: 233 LEDRLKNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLK 292
LE+RLK L + VMLFMKGN +CGFS +++ L GV + +FDIL DEEVRQGLK
Sbjct: 6 LEERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLK 65
Query: 293 VYSNWPTFPQLYHKGELIGGCDIVMELKDNGEL 325
YSNWPT+PQLY KGEL+GG DIV ELK+NGEL
Sbjct: 66 AYSNWPTYPQLYVKGELVGGLDIVKELKENGEL 98
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/101 (57%), Positives = 77/101 (76%)
Query: 121 LSATLTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQGKVDFGSFDILTDEEVR 180
++ L RL+ L N + VMLFMKG +E KCGFS +++EIL V++ +FDIL DEEVR
Sbjct: 2 MAPKLEERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVR 61
Query: 181 QGLKVYSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKKVL 221
QGLK YSNW +YPQLY+KGEL+GG DIV E++++GEL +L
Sbjct: 62 QGLKAYSNWPTYPQLYVKGELVGGLDIVKELKENGELLPIL 102
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 73/98 (74%)
Query: 3 LKSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLK 62
L+ RL+ L + VMLFMKG +E KCGFS+Q+++IL VE+ +F+IL D EVR+GLK
Sbjct: 6 LEERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLK 65
Query: 63 KFSNWPTFPQLYCKGELLGGCDIVIAMHKSGELKDVFR 100
+SNWPT+PQLY KGEL+GG DIV + ++GEL + R
Sbjct: 66 AYSNWPTYPQLYVKGELVGGLDIVKELKENGELLPILR 103
>pdb|3ZYW|A Chain A, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
pdb|3ZYW|B Chain B, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
Length = 111
Score = 127 bits (320), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 72/98 (73%)
Query: 230 KENLEDRLKNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQ 289
KE+L RLK L ++P MLFMKG P PRCGFS ++V L + + F SFDI +DEEVRQ
Sbjct: 2 KEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQ 61
Query: 290 GLKVYSNWPTFPQLYHKGELIGGCDIVMELKDNGELKS 327
GLK YS+WPT+PQLY GELIGG DI+ EL+ + EL +
Sbjct: 62 GLKAYSSWPTYPQLYVSGELIGGLDIIKELEASEELDT 99
Score = 127 bits (320), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 56/96 (58%), Positives = 74/96 (77%)
Query: 125 LTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQGKVDFGSFDILTDEEVRQGLK 184
L RL+ L +++P MLFMKG P+EP+CGFS ++VEIL + + F SFDI +DEEVRQGLK
Sbjct: 5 LNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLK 64
Query: 185 VYSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKKV 220
YS+W +YPQLY+ GELIGG DI+ E++ S EL +
Sbjct: 65 AYSSWPTYPQLYVSGELIGGLDIIKELEASEELDTI 100
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 72/96 (75%)
Query: 3 LKSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLK 62
L RL++L + P MLFMKGTP+EP+CGFS+Q+V+IL ++F SF+I SD EVR+GLK
Sbjct: 5 LNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLK 64
Query: 63 KFSNWPTFPQLYCKGELLGGCDIVIAMHKSGELKDV 98
+S+WPT+PQLY GEL+GG DI+ + S EL +
Sbjct: 65 AYSSWPTYPQLYVSGELIGGLDIIKELEASEELDTI 100
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 67/89 (75%)
Query: 237 LKNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSN 296
LK L + VMLFMKGN +CGFS +++ L GV + +FDIL DEEVRQGLK +SN
Sbjct: 8 LKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSN 67
Query: 297 WPTFPQLYHKGELIGGCDIVMELKDNGEL 325
WPT+PQLY +G+L+GG DIV ELKDNGEL
Sbjct: 68 WPTYPQLYVRGDLVGGLDIVKELKDNGEL 96
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 74/96 (77%)
Query: 126 TSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQGKVDFGSFDILTDEEVRQGLKV 185
+S L+ L N + VMLFMKG +E KCGFS +++EIL V++ +FDIL DEEVRQGLK
Sbjct: 5 SSGLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKT 64
Query: 186 YSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKKVL 221
+SNW +YPQLY++G+L+GG DIV E++ +GEL +L
Sbjct: 65 FSNWPTYPQLYVRGDLVGGLDIVKELKDNGELLPIL 100
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 70/96 (72%)
Query: 5 SRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKF 64
S L+ L + VMLFMKG +E KCGFS+Q+++IL VE+ +F+IL D EVR+GLK F
Sbjct: 6 SGLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTF 65
Query: 65 SNWPTFPQLYCKGELLGGCDIVIAMHKSGELKDVFR 100
SNWPT+PQLY +G+L+GG DIV + +GEL + +
Sbjct: 66 SNWPTYPQLYVRGDLVGGLDIVKELKDNGELLPILK 101
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 74/102 (72%), Gaps = 3/102 (2%)
Query: 3 LKSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDEKVE---FGSFNILSDNEVRE 59
++ ++ ++S PV+LFMKGTPE PKCGFSR + +L ++ V+ F ++N+L D E+RE
Sbjct: 5 IRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELRE 64
Query: 60 GLKKFSNWPTFPQLYCKGELLGGCDIVIAMHKSGELKDVFRD 101
G+K+FS WPT PQLY E +GGCD++ +M +SGEL D+ +
Sbjct: 65 GIKEFSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLEE 106
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 75/121 (61%), Gaps = 5/121 (4%)
Query: 121 LSATLTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQGKVD---FGSFDILTDE 177
LS + +E I S+PV+LFMKG PE PKCGFS + +L VD F ++++L D
Sbjct: 1 LSTEIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDP 60
Query: 178 EVRQGLKVYSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKKVLAEKGITV--EKENLED 235
E+R+G+K +S W + PQLY+ E IGG D++ M +SGEL +L E V E+E +D
Sbjct: 61 ELREGIKEFSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLEEAQALVPEEEEETKD 120
Query: 236 R 236
R
Sbjct: 121 R 121
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 66/98 (67%), Gaps = 3/98 (3%)
Query: 237 LKNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEGVN---FGSFDILTDEEVRQGLKV 293
+++ I S+PV+LFMKG P+ P+CGFS + L +GV+ F ++++L D E+R+G+K
Sbjct: 9 IEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKE 68
Query: 294 YSNWPTFPQLYHKGELIGGCDIVMELKDNGELKSTLSE 331
+S WPT PQLY E IGGCD++ + +GEL L E
Sbjct: 69 FSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLEE 106
>pdb|2LKU|A Chain A, Solution Structure Of Reduced Poplar Apo Grxs14
Length = 109
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 70/95 (73%)
Query: 3 LKSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLK 62
LK+ L +++ SH V+LFMKGT + P+CGFS+ VV ILK F S NIL + +R+GLK
Sbjct: 7 LKTTLDKVVTSHKVVLFMKGTKDFPQCGFSQTVVQILKSLNAPFESVNILENELLRQGLK 66
Query: 63 KFSNWPTFPQLYCKGELLGGCDIVIAMHKSGELKD 97
++S+WPTFPQLY GE GGCDI + +KSGEL++
Sbjct: 67 EYSSWPTFPQLYIDGEFFGGCDITVEAYKSGELQE 101
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 63/94 (67%)
Query: 233 LEDRLKNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLK 292
L+ L ++TS V+LFMKG D P+CGFS VV LK F S +IL +E +RQGLK
Sbjct: 7 LKTTLDKVVTSHKVVLFMKGTKDFPQCGFSQTVVQILKSLNAPFESVNILENELLRQGLK 66
Query: 293 VYSNWPTFPQLYHKGELIGGCDIVMELKDNGELK 326
YS+WPTFPQLY GE GGCDI +E +GEL+
Sbjct: 67 EYSSWPTFPQLYIDGEFFGGCDITVEAYKSGELQ 100
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 68/100 (68%)
Query: 120 GLSATLTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQGKVDFGSFDILTDEEV 179
L+ L + L+ ++ S V+LFMKG + P+CGFS VV+ILK F S +IL +E +
Sbjct: 2 ALTPALKTTLDKVVTSHKVVLFMKGTKDFPQCGFSQTVVQILKSLNAPFESVNILENELL 61
Query: 180 RQGLKVYSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKK 219
RQGLK YS+W ++PQLYI GE GG DI +E KSGEL++
Sbjct: 62 RQGLKEYSSWPTFPQLYIDGEFFGGCDITVEAYKSGELQE 101
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 74/103 (71%), Gaps = 1/103 (0%)
Query: 6 RLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDEKV-EFGSFNILSDNEVREGLKKF 64
+L L+ V++F+KGTPE+P+CGFS VV IL+ V ++ ++N+L D E+R+G+K +
Sbjct: 12 QLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDY 71
Query: 65 SNWPTFPQLYCKGELLGGCDIVIAMHKSGELKDVFRDHGIETV 107
SNWPT PQ+Y GE +GGCDI++ MH++G+L + + GI +
Sbjct: 72 SNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELKKLGIHSA 114
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 75/102 (73%), Gaps = 1/102 (0%)
Query: 126 TSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILK-QGKVDFGSFDILTDEEVRQGLK 184
+L++L+ V++F+KG PE+P+CGFS VV+IL+ G D+ ++++L D E+RQG+K
Sbjct: 10 AEQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIK 69
Query: 185 VYSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKKVLAEKGI 226
YSNW + PQ+Y+ GE +GG DI+L+M ++G+L + L + GI
Sbjct: 70 DYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELKKLGI 111
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 69/96 (71%), Gaps = 1/96 (1%)
Query: 235 DRLKNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEGV-NFGSFDILTDEEVRQGLKV 293
++L L+ V++F+KG P+ P+CGFS+ VV L+ GV ++ ++++L D E+RQG+K
Sbjct: 11 EQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKD 70
Query: 294 YSNWPTFPQLYHKGELIGGCDIVMELKDNGELKSTL 329
YSNWPT PQ+Y GE +GGCDI++++ NG+L L
Sbjct: 71 YSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEEL 106
>pdb|3IPZ|A Chain A, Crystal Structure Of Arabidopsis Monothiol Glutaredoxin
Atgr
Length = 109
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 68/95 (71%)
Query: 3 LKSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLK 62
LK L++L++S V+LFMKGT + P CGFS VV ILK+ V F NIL + +R+GLK
Sbjct: 7 LKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLK 66
Query: 63 KFSNWPTFPQLYCKGELLGGCDIVIAMHKSGELKD 97
++SNWPTFPQLY GE GGCDI + K+GEL++
Sbjct: 67 EYSNWPTFPQLYIGGEFFGGCDITLEAFKTGELQE 101
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 68/101 (67%)
Query: 119 TGLSATLTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQGKVDFGSFDILTDEE 178
+ L+ L LE L+NS V+LFMKG + P CGFS VV+ILK V F +IL +E
Sbjct: 1 SALTPQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEM 60
Query: 179 VRQGLKVYSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKK 219
+RQGLK YSNW ++PQLYI GE GG DI LE K+GEL++
Sbjct: 61 LRQGLKEYSNWPTFPQLYIGGEFFGGCDITLEAFKTGELQE 101
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 63/94 (67%)
Query: 233 LEDRLKNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLK 292
L+D L+ L+ S V+LFMKG D P CGFS+ VV LK V F +IL +E +RQGLK
Sbjct: 7 LKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLK 66
Query: 293 VYSNWPTFPQLYHKGELIGGCDIVMELKDNGELK 326
YSNWPTFPQLY GE GGCDI +E GEL+
Sbjct: 67 EYSNWPTFPQLYIGGEFFGGCDITLEAFKTGELQ 100
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 66/97 (68%)
Query: 235 DRLKNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVY 294
++++ I +P++L+MKG+P P CGFS++ V AL G F DIL + ++R L Y
Sbjct: 6 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKY 65
Query: 295 SNWPTFPQLYHKGELIGGCDIVMELKDNGELKSTLSE 331
+NWPTFPQL+ GEL+GGCDIV+E+ GEL+ + E
Sbjct: 66 ANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKE 102
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 67/98 (68%)
Query: 6 RLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFS 65
++Q+ + +P++L+MKG+P+ P CGFS Q V L F +IL + ++R L K++
Sbjct: 7 KIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYA 66
Query: 66 NWPTFPQLYCKGELLGGCDIVIAMHKSGELKDVFRDHG 103
NWPTFPQL+ GEL+GGCDIVI M++ GEL+ + ++
Sbjct: 67 NWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETA 104
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 69/109 (63%)
Query: 123 ATLTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQGKVDFGSFDILTDEEVRQG 182
+T +++ I +P++L+MKG P+ P CGFS + V+ L F DIL + ++R
Sbjct: 2 STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAE 61
Query: 183 LKVYSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKKVLAEKGITVEKE 231
L Y+NW ++PQL++ GEL+GG DIV+EM + GEL++++ E + E
Sbjct: 62 LPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKSE 110
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 66/97 (68%)
Query: 235 DRLKNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVY 294
++++ I +P++L+MKG+P P CGFS++ V AL G F DIL + ++R L Y
Sbjct: 26 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKY 85
Query: 295 SNWPTFPQLYHKGELIGGCDIVMELKDNGELKSTLSE 331
+NWPTFPQL+ GEL+GGCDIV+E+ GEL+ + E
Sbjct: 86 ANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKE 122
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 67/96 (69%)
Query: 6 RLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFS 65
++Q+ + +P++L+MKG+P+ P CGFS Q V L F +IL + ++R L K++
Sbjct: 27 KIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYA 86
Query: 66 NWPTFPQLYCKGELLGGCDIVIAMHKSGELKDVFRD 101
NWPTFPQL+ GEL+GGCDIVI M++ GEL+ + ++
Sbjct: 87 NWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKE 122
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 69/109 (63%)
Query: 123 ATLTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQGKVDFGSFDILTDEEVRQG 182
+T +++ I +P++L+MKG P+ P CGFS + V+ L F DIL + ++R
Sbjct: 22 STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAE 81
Query: 183 LKVYSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKKVLAEKGITVEKE 231
L Y+NW ++PQL++ GEL+GG DIV+EM + GEL++++ E + E
Sbjct: 82 LPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKSE 130
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Query: 236 RLKNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFG--SFDILTD-EEVRQGLK 292
+ K L +S+PV++F K CG+ ++V L + G ++ D L+D +++ L
Sbjct: 12 KAKELASSAPVVVFSK-----TYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALA 66
Query: 293 VYSNWPTFPQLYHKGELIGGCDIVMELKDNGEL 325
++ T P ++ G+ IGGCD V+E EL
Sbjct: 67 HWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNEL 99
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 6 RLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNI--LSD-NEVREGLK 62
+ ++L S PV++F K CG+ +V +L + + LSD ++++ L
Sbjct: 12 KAKELASSAPVVVFSK-----TYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALA 66
Query: 63 KFSNWPTFPQLYCKGELLGGCDIVIAMHKSGELKDVFRD 101
++ T P ++ G+ +GGCD V+ H+ EL + +D
Sbjct: 67 HWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQD 105
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Query: 236 RLKNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFG--SFDILTD-EEVRQGLK 292
+ K L +S+PV++F K CG+ ++V L + G ++ D L+D +++ L
Sbjct: 13 KAKELASSAPVVVFSK-----TYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALA 67
Query: 293 VYSNWPTFPQLYHKGELIGGCDIVMELKDNGEL 325
++ T P ++ G+ IGGCD V+E EL
Sbjct: 68 HWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNEL 100
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 6 RLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNI--LSD-NEVREGLK 62
+ ++L S PV++F K CG+ +V +L + + LSD ++++ L
Sbjct: 13 KAKELASSAPVVVFSK-----TYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALA 67
Query: 63 KFSNWPTFPQLYCKGELLGGCDIVIAMHKSGELKDVFRD 101
++ T P ++ G+ +GGCD V+ H+ EL + +D
Sbjct: 68 HWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQD 106
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 45.1 bits (105), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 257 PRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIV 316
P C + ++ L +G F D E+R ++ S TFPQ++ +GGCD +
Sbjct: 14 PGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIFIGSVHVGGCDDL 73
Query: 317 MELKDNGELKSTL 329
L+D G+L S L
Sbjct: 74 YALEDEGKLDSLL 86
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 37/74 (50%)
Query: 27 PKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIV 86
P C + + +L + EF + + E+R +++ S TFPQ++ +GGCD +
Sbjct: 14 PGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIFIGSVHVGGCDDL 73
Query: 87 IAMHKSGELKDVFR 100
A+ G+L + +
Sbjct: 74 YALEDEGKLDSLLK 87
Score = 37.7 bits (86), Expect = 0.009, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 36/73 (49%)
Query: 149 PKCGFSGKVVEILKQGKVDFGSFDILTDEEVRQGLKVYSNWSSYPQLYIKGELIGGSDIV 208
P C + + +L + +F D E+R ++ S +++PQ++I +GG D +
Sbjct: 14 PGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIFIGSVHVGGCDDL 73
Query: 209 LEMQKSGELKKVL 221
++ G+L +L
Sbjct: 74 YALEDEGKLDSLL 86
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 45.1 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 11/86 (12%)
Query: 16 VMLFMKGTPEEPKCGFSRQVVDIL-----KDEKVEFGSFNILSD-NEVREGLKKFSNWPT 69
V++F+K P C F R+ ++L K+ +EF SD NE+++ L++ + T
Sbjct: 14 VVVFIK-----PTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGART 68
Query: 70 FPQLYCKGELLGGCDIVIAMHKSGEL 95
P+++ E +GGC + +MHK GEL
Sbjct: 69 VPRVFIGKECIGGCTDLESMHKRGEL 94
Score = 37.4 bits (85), Expect = 0.010, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 129 LESLINSSPVMLFMKGKPEEPKCGFSGKVVEIL-----KQGKVDFGSFDILTD-EEVRQG 182
+ S I V++F+K P C F K E+L K+G ++F +D E++
Sbjct: 5 VNSKIQPGKVVVFIK-----PTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDY 59
Query: 183 LKVYSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKKVLAEKG 225
L+ + + P+++I E IGG + M K GEL L + G
Sbjct: 60 LQQLTGARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQQVG 102
Score = 31.2 bits (69), Expect = 0.90, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 241 ITSSPVMLFMKGNPDSPRCGFSSKVVNAL--KEEGVNFGSFDILTD-EEVRQGLKVYSNW 297
I V++F+K P P C + ++++ L KE + F +D E++ L+ +
Sbjct: 9 IQPGKVVVFIK--PTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGA 66
Query: 298 PTFPQLYHKGELIGGCDIVMELKDNGELKSTLSE 331
T P+++ E IGGC + + GEL + L +
Sbjct: 67 RTVPRVFIGKECIGGCTDLESMHKRGELLTRLQQ 100
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 129 LESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQGKVDFGS--FDILTD-EEVRQGLKV 185
L ++S+ V+LF K C + KV ++L + K+ + D L++ +++ L
Sbjct: 11 LRKTVDSAAVILFSK-----TTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLAS 65
Query: 186 YSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKKVLAE 223
+S + PQ++++G+ IG S VL+ + EL ++ E
Sbjct: 66 FSKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNE 103
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 129 LESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQGKVDFGS--FDILTD-EEVRQGLKV 185
L ++S+ V+LF K C + KV ++L + K+ + D L++ +++ L
Sbjct: 11 LRKTVDSAAVILFSK-----TTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLAS 65
Query: 186 YSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKKVLAE 223
+S + PQ++++G+ IG S VL+ + EL ++ E
Sbjct: 66 FSKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNE 103
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 129 LESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQGKVDFGS--FDILTD-EEVRQGLKV 185
L ++S+ V+LF K C + KV ++L + K+ + D L++ +++ L
Sbjct: 11 LRKTVDSAAVILFSK-----TTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLAS 65
Query: 186 YSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKKVLAE 223
+S + PQ++++G+ IG S VL+ + EL ++ E
Sbjct: 66 FSKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNE 103
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Query: 233 LEDRLKNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDE------E 286
LED +K + +PV+++ K C +SS+V + K +N + DE +
Sbjct: 7 LEDAVKKTVAENPVVVYSK-----TWCSYSSEVKSLFKR--LNVDPLVVELDELGAQGPQ 59
Query: 287 VRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKDNGELKSTLSE 331
+++ L+ + T P ++ G+ IGGC ++L GEL+ LSE
Sbjct: 60 IQKVLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSE 104
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 3 LKSRLQQLLDSHPVMLFMK---GTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVRE 59
L+ +++ + +PV+++ K E K F R VD L E E G+ ++++
Sbjct: 7 LEDAVKKTVAENPVVVYSKTWCSYSSEVKSLFKRLNVDPLVVELDELGA----QGPQIQK 62
Query: 60 GLKKFSNWPTFPQLYCKGELLGGCDIVIAMHKSGELKDVFRD 101
L++ + T P ++ G+ +GGC + +++ GEL+ + +
Sbjct: 63 VLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSE 104
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 17/111 (15%)
Query: 123 ATLTSRLESLINSS----PVMLFMKGKPEEPKCGFSGKVVEILKQGKVDFGSFDILTDE- 177
A+ SRLE + + PV+++ K C +S +V + K+ VD + DE
Sbjct: 1 ASFGSRLEDAVKKTVAENPVVVYSK-----TWCSYSSEVKSLFKRLNVD--PLVVELDEL 53
Query: 178 -----EVRQGLKVYSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKKVLAE 223
++++ L+ + + P ++I G+ IGG +++ + GEL+ +L+E
Sbjct: 54 GAQGPQIQKVLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSE 104
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 11/86 (12%)
Query: 16 VMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILS------DNEVREGLKKFSNWPT 69
V++F+K P C + R+ +IL ++ G + NE+++ L++ + T
Sbjct: 15 VVVFIK-----PTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQLTGART 69
Query: 70 FPQLYCKGELLGGCDIVIAMHKSGEL 95
P+++ + +GGC ++++ +SGEL
Sbjct: 70 VPRVFIGKDCIGGCSDLVSLQQSGEL 95
Score = 36.2 bits (82), Expect = 0.026, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 15/101 (14%)
Query: 133 INSSPVMLFMKGKPEEPKCGFSGKVVEIL-----KQGKVDFGSFDILTDE---EVRQGLK 184
I V++F+K P C + + EIL KQG ++F DI E++ L+
Sbjct: 10 IQPGKVVVFIK-----PTCPYCRRAQEILSQLPIKQGLLEF--VDITATNHTNEIQDYLQ 62
Query: 185 VYSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKKVLAEKG 225
+ + P+++I + IGG ++ +Q+SGEL L + G
Sbjct: 63 QLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIG 103
Score = 31.2 bits (69), Expect = 0.74, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 241 ITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDE---EVRQGLKVYSNW 297
I V++F+K P P C + ++++ L + DI E++ L+ +
Sbjct: 10 IQPGKVVVFIK--PTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQLTGA 67
Query: 298 PTFPQLYHKGELIGGCDIVMELKDNGELKSTLSE 331
T P+++ + IGGC ++ L+ +GEL + L +
Sbjct: 68 RTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQ 101
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 15/105 (14%)
Query: 129 LESLINSSPVMLFMKGKPEEPKCGFSGKVVEIL-----KQGKVDFGSFDILTDE---EVR 180
+ S I V++F+K P C +S + EIL KQG ++F DI E++
Sbjct: 5 VNSKIQPGKVVVFIK-----PTCPYSRRAQEILSQLPIKQGLLEF--VDITATNHTNEIQ 57
Query: 181 QGLKVYSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKKVLAEKG 225
L+ + + P+++I + IGGS ++ +Q+SGEL L + G
Sbjct: 58 DYLQQLTGARTVPRVFIGKDSIGGSSDLVSLQQSGELLTRLKQIG 102
Score = 36.6 bits (83), Expect = 0.022, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 11/86 (12%)
Query: 16 VMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILS------DNEVREGLKKFSNWPT 69
V++F+K P C +SR+ +IL ++ G + NE+++ L++ + T
Sbjct: 14 VVVFIK-----PTCPYSRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQLTGART 68
Query: 70 FPQLYCKGELLGGCDIVIAMHKSGEL 95
P+++ + +GG ++++ +SGEL
Sbjct: 69 VPRVFIGKDSIGGSSDLVSLQQSGEL 94
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 257 PRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNW-PTFPQLYHKGELIGGCDI 315
P C + + + L ++GV + D T +RQ + +N TFPQ++ +GGCD
Sbjct: 14 PNCPYCKRARDLLDKKGVKYTDIDAST--SLRQEMVQRANGRNTFPQIFIGDYHVGGCDD 71
Query: 316 VMELKDNGELKSTLSE 331
+ L++ G+L S L +
Sbjct: 72 LYALENKGKLDSLLQD 87
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 27 PKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIV 86
P C + ++ D+L + V++ + S + +E +++ + TFPQ++ +GGCD +
Sbjct: 14 PNCPYCKRARDLLDKKGVKYTDIDA-STSLRQEMVQRANGRNTFPQIFIGDYHVGGCDDL 72
Query: 87 IAMHKSGELKDVFRD 101
A+ G+L + +D
Sbjct: 73 YALENKGKLDSLLQD 87
Score = 31.6 bits (70), Expect = 0.61, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 149 PKCGFSGKVVEILKQGKVDFGSFDILTDEEVRQGLKVYSNW-SSYPQLYIKGELIGGSDI 207
P C + + ++L + V + D T +RQ + +N +++PQ++I +GG D
Sbjct: 14 PNCPYCKRARDLLDKKGVKYTDIDAST--SLRQEMVQRANGRNTFPQIFIGDYHVGGCDD 71
Query: 208 VLEMQKSGELKKVLAE 223
+ ++ G+L +L +
Sbjct: 72 LYALENKGKLDSLLQD 87
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 36.6 bits (83), Expect = 0.019, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 29 CGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWP-TFPQLYCKGELLGGCDIVI 87
C F + + +LK + VEF + I DNE RE + +N + PQ++ + +GGCD +
Sbjct: 26 CPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQIFIDDQHIGGCDDIY 85
Query: 88 AMHKSGEL 95
A+ +G+L
Sbjct: 86 ALDGAGKL 93
Score = 32.7 bits (73), Expect = 0.27, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 259 CGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWP-TFPQLYHKGELIGGCDIVM 317
C F + + LK +GV F + I D E R+ + +N + PQ++ + IGGCD +
Sbjct: 26 CPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQIFIDDQHIGGCDDIY 85
Query: 318 ELKDNGELKSTL 329
L G+L L
Sbjct: 86 ALDGAGKLDPLL 97
Score = 32.0 bits (71), Expect = 0.46, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 151 CGFSGKVVEILKQGKVDFGSFDILTDEEVRQGLKVYSNWS-SYPQLYIKGELIGGSDIVL 209
C F + + +LK+ V+F + I D E R+ + +N S PQ++I + IGG D +
Sbjct: 26 CPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQIFIDDQHIGGCDDIY 85
Query: 210 EMQKSGELKKVL 221
+ +G+L +L
Sbjct: 86 ALDGAGKLDPLL 97
>pdb|2HZE|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 7 LQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILS------DNEVREG 60
+QQ L ++ V +F+K T C F R +DIL + G++ I+ +NE+R+
Sbjct: 12 VQQRLANNKVTIFVKYT-----CPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDY 66
Query: 61 LKKFSNWPTFPQLYCKGELLGGCDIVIAMHKSGELKDVFRDHGI 104
++ + T P+++ +GG ++ + L D+ G+
Sbjct: 67 FEQITGGKTVPRIFFGKTSIGGYSDLLEIDNMDALGDILSSIGV 110
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Query: 230 KENLEDRLKNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEGV--NFGSFDILTD-EE 286
+E L L LI S V++F K C S++V GV N D + D
Sbjct: 3 REELRRHLVGLIERSRVVIFSKS-----YCPHSTRVKELFSSLGVECNVLELDQVDDGAR 57
Query: 287 VRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKDNGELKSTLSE 331
V++ L +N T P ++ +GGCD + +G L+ L E
Sbjct: 58 VQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQE 102
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 15/115 (13%)
Query: 125 LTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQGKVDFGSFDILTDEEVRQGLK 184
L L LI S V++F K C S +V E+ V+ ++L ++V G +
Sbjct: 6 LRRHLVGLIERSRVVIFSKSY-----CPHSTRVKELFSSLGVEC---NVLELDQVDDGAR 57
Query: 185 V------YSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKKVLAEKGITVEKENL 233
V +N + P +++ +GG D + +SG L+K+L E + + ENL
Sbjct: 58 VQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQE-DLAYDAENL 111
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 14/105 (13%)
Query: 3 LKSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREG-- 60
L+ L L++ V++F K C S +V ++ VE N+L ++V +G
Sbjct: 6 LRRHLVGLIERSRVVIFSKSY-----CPHSTRVKELFSSLGVEC---NVLELDQVDDGAR 57
Query: 61 ----LKKFSNWPTFPQLYCKGELLGGCDIVIAMHKSGELKDVFRD 101
L + +N T P ++ +GGCD ++SG L+ + ++
Sbjct: 58 VQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQE 102
>pdb|2HZE|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 7 LQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILS------DNEVREG 60
+QQ L ++ V +F+K T P C R +DIL + G++ I+ +NE+R+
Sbjct: 12 VQQRLANNKVTIFVKYT--XPFC---RNALDILNKFSFKRGAYEIVDIKEFKPENELRDY 66
Query: 61 LKKFSNWPTFPQLYCKGELLGGCDIVIAMHKSGELKDVFRDHGI 104
++ + T P+++ +GG ++ + L D+ G+
Sbjct: 67 FEQITGGKTVPRIFFGKTSIGGYSDLLEIDNMDALGDILSSIGV 110
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 10 LLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNIL------SDNEVREGLKK 63
+LD P+++F K T C +S+ ++L++E ++ I+ E++E +K
Sbjct: 10 ILDLSPIIIFSKST-----CSYSKGXKELLENEYQFIPNYYIIELDKHGHGEELQEYIKL 64
Query: 64 FSNWPTFPQLYCKGELLGGCDIVIAMHKSGEL 95
+ T P L G GG + + +H G+L
Sbjct: 65 VTGRGTVPNLLVNGVSRGGNEEIKKLHTQGKL 96
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 32.7 bits (73), Expect = 0.30, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 29 CGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIA 88
C +S + +L + V F I + RE + K S T PQ++ + +GG D + A
Sbjct: 11 CPYSHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYA 70
Query: 89 MHKSGELKDVFR 100
+ G L + +
Sbjct: 71 LDARGGLDPLLK 82
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%)
Query: 151 CGFSGKVVEILKQGKVDFGSFDILTDEEVRQGLKVYSNWSSYPQLYIKGELIGGSDIVLE 210
C +S + +L V F I + R+ + S ++ PQ++I + IGG D +
Sbjct: 11 CPYSHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYA 70
Query: 211 MQKSGELKKVL 221
+ G L +L
Sbjct: 71 LDARGGLDPLL 81
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 259 CGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVME 318
C +S + L +GV+F I + R+ + S T PQ++ + IGG D +
Sbjct: 11 CPYSHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYA 70
Query: 319 LKDNGELKSTL 329
L G L L
Sbjct: 71 LDARGGLDPLL 81
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 5 SRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFG--SFNILS-DNEVREGL 61
+++Q+ + + V++F K + C + + D V + ++L N+ ++ L
Sbjct: 40 NQIQETISDNCVVIFSKTS-----CSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDAL 94
Query: 62 KKFSNWPTFPQLYCKGELLGGCDIVIAMHKSGEL 95
K + T P+++ G +GG +HK G+L
Sbjct: 95 YKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKL 128
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 5 SRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFG--SFNILS-DNEVREGL 61
+++Q+ + + V++F K + C + + D V + ++L N+ ++ L
Sbjct: 18 NQIQETISDNCVVIFSKTS-----CSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDAL 72
Query: 62 KKFSNWPTFPQLYCKGELLGGCDIVIAMHKSGEL 95
K + T P+++ G +GG +HK G+L
Sbjct: 73 YKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKL 106
>pdb|3ZIT|A Chain A, Crystal Structure Of The Thioredoxin-like Protein Bc3987
Mutant T8a
pdb|3ZIT|B Chain B, Crystal Structure Of The Thioredoxin-like Protein Bc3987
Mutant T8a
Length = 78
Score = 32.0 bits (71), Expect = 0.45, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 144 GKPEEPKCGFSGKVVEILKQGKVDFGSFDILTDEEVRQGLKVYSNWSSYPQLYIKGELIG 203
+P+ P C V E LK V + FD+ D R L + S P + I GE++
Sbjct: 8 AQPDCPPCVI---VKEFLKHNNVAYEEFDVKKDAAARNRLLYDYDSYSTPTVVIDGEVVA 64
Query: 204 GSDI 207
G I
Sbjct: 65 GFQI 68
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 5 SRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFG--SFNILS-DNEVREGL 61
+++Q+ + + V++F K + C + + D V + ++L N+ ++ L
Sbjct: 26 NQIQETISDNCVVIFSKTS-----CSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDAL 80
Query: 62 KKFSNWPTFPQLYCKGELLGGCDIVIAMHKSGEL 95
K + T P+++ G +GG +HK G+L
Sbjct: 81 YKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKL 114
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 148 EPKCGFSGKVVEILKQGKVDFGSFDILTDEEVRQGLKVYSNWSSYPQLYIKGELIGGSD 206
+P C F K ++L + F IL + ++ S ++ PQ++I G+ IGGSD
Sbjct: 177 KPGCPFCAKAKQLLHDKGLSFEEI-ILGHDATIVSVRAVSGRTTVPQVFIGGKHIGGSD 234
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 257 PRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCD 314
P C F +K L ++G++F IL + ++ S T PQ++ G+ IGG D
Sbjct: 178 PGCPFCAKAKQLLHDKGLSFEEI-ILGHDATIVSVRAVSGRTTVPQVFIGGKHIGGSD 234
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 26 EPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCD 84
+P C F + +L D+ + F IL + ++ S T PQ++ G+ +GG D
Sbjct: 177 KPGCPFCAKAKQLLHDKGLSFEEI-ILGHDATIVSVRAVSGRTTVPQVFIGGKHIGGSD 234
>pdb|3ZIJ|A Chain A, Crystal Structure Of The Thioredoxin-like Protein Bc3987
pdb|3ZIJ|B Chain B, Crystal Structure Of The Thioredoxin-like Protein Bc3987
Length = 78
Score = 32.0 bits (71), Expect = 0.52, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 145 KPEEPKCGFSGKVVEILKQGKVDFGSFDILTDEEVRQGLKVYSNWSSYPQLYIKGELIGG 204
+P+ P C V E LK V + FD+ D R L + S P + I GE++ G
Sbjct: 9 QPDCPPCVI---VKEFLKHNNVAYEEFDVKKDAAARNRLLYDYDSYSTPTVVIDGEVVAG 65
Query: 205 SDI 207
I
Sbjct: 66 FQI 68
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 233 LEDRLKNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEGVN--FGSFDILTDE--EVR 288
+E+ ++ +T + V+++ K C + ++V K GV D L + +++
Sbjct: 8 MEESIRKTVTENTVVIYSK-----TWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQ 62
Query: 289 QGLKVYSNWPTFPQLYHKGELIGGCDIVMELKDNGELKSTLSE 331
+ L+ + T P ++ G+ IGGC ++L G+L+ L+E
Sbjct: 63 KVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAE 105
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 178 EVRQGLKVYSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKKVL 221
E++ L+ S + P +YI G+ IGG+ + ++K+G+L ++L
Sbjct: 81 EIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 124
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 28/46 (60%)
Query: 55 NEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIAMHKSGELKDVFR 100
+E+++ L++ S T P +Y G+ +GG + + K+G+L ++ +
Sbjct: 80 SEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILK 125
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 286 EVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKDNGELKSTL 329
E++ L+ S T P +Y G+ IGG + LK NG+L L
Sbjct: 81 EIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 124
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 28/46 (60%)
Query: 55 NEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIAMHKSGELKDVFR 100
+E+++ L++ S T P +Y G+ +GG + + K+G+L ++ +
Sbjct: 63 SEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILK 108
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 178 EVRQGLKVYSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKKVL 221
E++ L+ S + P +YI G+ IGG+ + ++K+G+L ++L
Sbjct: 64 EIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 107
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 286 EVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKDNGELKSTL 329
E++ L+ S T P +Y G+ IGG + LK NG+L L
Sbjct: 64 EIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 107
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 178 EVRQGLKVYSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKKVL 221
E++ L+ S + P +YI G+ IGG+ + ++K+G+L ++L
Sbjct: 61 EIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 104
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 28/46 (60%)
Query: 55 NEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIAMHKSGELKDVFR 100
+E+++ L++ S T P +Y G+ +GG + + K+G+L ++ +
Sbjct: 60 SEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILK 105
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 286 EVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKDNGELKSTL 329
E++ L+ S T P +Y G+ IGG + LK NG+L L
Sbjct: 61 EIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 104
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 30.8 bits (68), Expect = 0.97, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 32/72 (44%)
Query: 29 CGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIA 88
C + + +L + V F I + RE + K S T PQ++ + +GG D + A
Sbjct: 11 CPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYA 70
Query: 89 MHKSGELKDVFR 100
+ G L + +
Sbjct: 71 LDARGGLDPLLK 82
Score = 28.5 bits (62), Expect = 4.8, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 30/71 (42%)
Query: 259 CGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVME 318
C + + L +GV+F I + R+ + S T PQ++ + IGG D +
Sbjct: 11 CPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYA 70
Query: 319 LKDNGELKSTL 329
L G L L
Sbjct: 71 LDARGGLDPLL 81
>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MO9|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MOK|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|C Chain C, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|D Chain D, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|2C3D|A Chain A, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3D|B Chain B, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3C|A Chain A, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|2C3C|B Chain B, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|3Q6J|A Chain A, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
pdb|3Q6J|B Chain B, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
Length = 523
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 26/149 (17%)
Query: 97 DVFRDHGIETVGGSGKSGISESTG----LSATLTSRLESLINSSPVMLFMKGKPEEPKCG 152
D ++ G+E + GS + I E +T E I + V L G E+P+
Sbjct: 263 DRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFL---GLGEQPR-- 317
Query: 153 FSGKVVEILKQGKVDFG-SFDILTDEEVRQGLKVYSNWSSYPQLYIKGELIGGSDIVLEM 211
S ++ +IL +D G ++L +E ++ +S P +Y G+LIGG + +
Sbjct: 318 -SAELAKILG---LDLGPKGEVLVNEYLQ---------TSVPNVYAVGDLIGGPMEMFKA 364
Query: 212 QKSG--ELKKVLAEKGITVEKENLEDRLK 238
+KSG + V+ EK I+ +N D L
Sbjct: 365 RKSGCYAARNVMGEK-ISYTPKNYPDFLH 392
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 25/124 (20%)
Query: 180 RQGLKVYSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKKVLAEKGIT--------VEKE 231
RQ + + PQ+++ E + D L ++ ELKK+ + G+T VE
Sbjct: 145 RQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAM 204
Query: 232 NLEDRLKNL-------------ITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEG-VNFG 277
+ DR+ + + P F+ G SP F +V E+G V+FG
Sbjct: 205 TMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFIGSPPMNFLDAIVT---EDGFVDFG 261
Query: 278 SFDI 281
F +
Sbjct: 262 EFRL 265
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 9/110 (8%)
Query: 71 PQLYCKGELLGGCDIVIAMHKSGELKDVFRDHGIETVGGSGKSGISESTGLSATLTSR-- 128
PQ++ E L D + + ELK + R G+ T+ + + + G + +R
Sbjct: 158 PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGV 217
Query: 129 LESL-----INSSPVMLFMKGKPEEPKCGFSGKVVEILKQGKVDFGSFDI 173
L+ + + P F+ G P F +V + G VDFG F +
Sbjct: 218 LQQVGSPDEVYDKPANTFVAGFIGSPPMNFLDAIVT--EDGFVDFGEFRL 265
>pdb|2ZVB|A Chain A, Crystal Structure Of Tt0207 From Thermus Thermophilus Hb8
pdb|2ZVC|A Chain A, Form 2 Structure (C2221) Of Tt0207 From Thermus
Thermophilus Hb8
Length = 295
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 16/98 (16%)
Query: 178 EVRQGLKVYSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKKVLAEKGITVEKENLEDRL 237
E +G +V +S+Y +L + L+ G ++V KG+T E + E+ L
Sbjct: 23 EALEGAEVVIGYSTYVKLLEEMGLLAGKEVV--------------RKGMTEELDRAEEAL 68
Query: 238 KNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEGVN 275
+ ++ V L G+P G ++ V+ ++E G+
Sbjct: 69 ERALSGQRVALVSGGDPGI--YGMAAPVLELMEERGLK 104
>pdb|3IB7|A Chain A, Crystal Structure Of Full Length Rv0805
pdb|3IB8|A Chain A, Crystal Structure Of Full Length Rv0805 In Complex With
5'-amp
Length = 330
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 192 YPQLYIKGEL-IGGSDIVLEMQKSGELKKVLAEKGITVEKENLEDRLKNLITSSPVMLFM 250
YP + + +GG + V G+ ++ +AE GI +E + K+ P M+
Sbjct: 267 YPDTVVHSVIPLGGGETVGTFVSPGQARRKIAESGIFIEPSRRDSLFKH-----PPMVLT 321
Query: 251 KGNPDSP 257
P SP
Sbjct: 322 SSAPRSP 328
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.137 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,490,038
Number of Sequences: 62578
Number of extensions: 467490
Number of successful extensions: 1163
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1046
Number of HSP's gapped (non-prelim): 117
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)