Query 020081
Match_columns 331
No_of_seqs 365 out of 3198
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 06:51:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020081.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020081hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00062 glutaredoxin; Provisi 100.0 3.1E-35 6.7E-40 253.8 19.4 187 126-331 6-200 (204)
2 PTZ00062 glutaredoxin; Provisi 100.0 1.7E-34 3.8E-39 249.1 18.6 189 3-223 5-200 (204)
3 PRK10824 glutaredoxin-4; Provi 100.0 1.3E-29 2.8E-34 198.6 12.0 100 232-331 3-102 (115)
4 TIGR00365 monothiol glutaredox 100.0 1.2E-27 2.6E-32 183.8 11.9 95 235-329 3-97 (97)
5 PRK10824 glutaredoxin-4; Provi 99.9 1.3E-27 2.9E-32 187.3 12.1 104 1-104 2-105 (115)
6 COG0278 Glutaredoxin-related p 99.9 4.3E-27 9.3E-32 174.1 11.0 100 232-331 3-103 (105)
7 KOG0911 Glutaredoxin-related p 99.9 1E-26 2.2E-31 197.8 13.2 193 24-223 24-226 (227)
8 cd03028 GRX_PICOT_like Glutare 99.9 2.5E-26 5.5E-31 174.3 10.8 90 237-326 1-90 (90)
9 KOG0911 Glutaredoxin-related p 99.9 5.1E-26 1.1E-30 193.5 12.4 190 135-331 16-226 (227)
10 COG0278 Glutaredoxin-related p 99.9 1.1E-24 2.5E-29 161.2 10.5 101 124-224 3-104 (105)
11 PHA03050 glutaredoxin; Provisi 99.9 1.8E-24 3.8E-29 169.0 11.4 93 234-331 3-101 (108)
12 TIGR00365 monothiol glutaredox 99.9 2.1E-24 4.6E-29 165.8 11.2 96 4-99 2-97 (97)
13 TIGR02189 GlrX-like_plant Glut 99.9 1.9E-24 4.1E-29 166.7 10.0 89 238-331 2-93 (99)
14 cd03028 GRX_PICOT_like Glutare 99.9 4.9E-23 1.1E-27 156.2 10.0 90 7-96 1-90 (90)
15 PHA03050 glutaredoxin; Provisi 99.9 1.2E-22 2.6E-27 158.7 11.8 96 4-104 3-104 (108)
16 TIGR02189 GlrX-like_plant Glut 99.9 6.8E-23 1.5E-27 158.0 9.9 92 8-104 2-96 (99)
17 KOG1752 Glutaredoxin and relat 99.9 3.1E-22 6.8E-27 153.8 11.6 98 2-104 2-102 (104)
18 KOG1752 Glutaredoxin and relat 99.9 8E-22 1.7E-26 151.5 11.5 94 233-331 3-99 (104)
19 PRK10638 glutaredoxin 3; Provi 99.8 6.5E-21 1.4E-25 142.5 10.6 82 244-330 2-83 (83)
20 TIGR02181 GRX_bact Glutaredoxi 99.8 4.6E-21 1E-25 141.9 9.5 79 246-329 1-79 (79)
21 cd03031 GRX_GRX_like Glutaredo 99.8 1.5E-20 3.3E-25 154.0 10.3 87 245-331 1-92 (147)
22 TIGR02187 GlrX_arch Glutaredox 99.8 2.7E-19 5.8E-24 157.7 15.5 161 15-200 22-195 (215)
23 COG0695 GrxC Glutaredoxin and 99.8 8.7E-20 1.9E-24 134.9 9.1 77 245-326 2-80 (80)
24 cd03418 GRX_GRXb_1_3_like Glut 99.8 2.9E-19 6.3E-24 130.7 9.9 74 245-323 1-75 (75)
25 cd03027 GRX_DEP Glutaredoxin ( 99.8 4.2E-19 9.2E-24 129.3 9.0 72 245-321 2-73 (73)
26 TIGR02180 GRX_euk Glutaredoxin 99.8 1.6E-18 3.6E-23 129.3 9.7 79 246-329 1-84 (84)
27 cd03419 GRX_GRXh_1_2_like Glut 99.8 4.4E-18 9.6E-23 126.5 9.8 79 245-328 1-82 (82)
28 cd03030 GRX_SH3BGR Glutaredoxi 99.8 2.9E-18 6.2E-23 129.6 8.8 85 246-330 2-91 (92)
29 PRK10638 glutaredoxin 3; Provi 99.8 5.3E-18 1.1E-22 126.7 9.8 81 15-100 3-83 (83)
30 cd03029 GRX_hybridPRX5 Glutare 99.8 4.8E-18 1E-22 123.3 9.0 70 245-320 2-71 (72)
31 TIGR02190 GlrX-dom Glutaredoxi 99.7 5E-18 1.1E-22 125.6 8.8 75 240-320 4-78 (79)
32 PRK11200 grxA glutaredoxin 1; 99.7 1.4E-17 3E-22 125.0 9.5 73 245-322 2-81 (85)
33 TIGR02183 GRXA Glutaredoxin, G 99.7 1.5E-17 3.2E-22 125.1 9.5 73 246-323 2-81 (86)
34 TIGR02181 GRX_bact Glutaredoxi 99.7 1.3E-17 2.7E-22 123.4 9.0 79 16-99 1-79 (79)
35 TIGR02187 GlrX_arch Glutaredox 99.7 7.1E-16 1.5E-20 135.9 15.3 167 124-308 8-195 (215)
36 COG0695 GrxC Glutaredoxin and 99.7 1.4E-16 3E-21 117.8 8.9 76 15-95 2-79 (80)
37 cd03031 GRX_GRX_like Glutaredo 99.7 1.7E-16 3.8E-21 130.1 10.4 88 15-102 1-93 (147)
38 cd02066 GRX_family Glutaredoxi 99.7 2.4E-16 5.2E-21 113.4 9.4 71 245-320 1-71 (72)
39 cd03418 GRX_GRXb_1_3_like Glut 99.7 3.1E-16 6.6E-21 114.6 9.5 74 15-93 1-75 (75)
40 TIGR02180 GRX_euk Glutaredoxin 99.7 3.7E-16 8E-21 116.5 8.8 79 16-99 1-84 (84)
41 cd03027 GRX_DEP Glutaredoxin ( 99.7 5.1E-16 1.1E-20 113.0 9.0 71 15-90 2-72 (73)
42 PF00462 Glutaredoxin: Glutare 99.6 4.9E-16 1.1E-20 108.6 7.3 60 246-310 1-60 (60)
43 cd03419 GRX_GRXh_1_2_like Glut 99.6 1.1E-15 2.3E-20 113.6 8.6 78 15-97 1-81 (82)
44 TIGR02190 GlrX-dom Glutaredoxi 99.6 1.5E-15 3.2E-20 112.3 9.0 74 10-89 4-77 (79)
45 PRK12759 bifunctional gluaredo 99.6 9E-16 1.9E-20 147.2 9.7 80 244-330 2-89 (410)
46 cd03029 GRX_hybridPRX5 Glutare 99.6 2.8E-15 6.2E-20 108.7 8.9 69 15-89 2-70 (72)
47 PRK11200 grxA glutaredoxin 1; 99.6 1.2E-14 2.5E-19 109.0 8.9 72 15-91 2-80 (85)
48 cd02066 GRX_family Glutaredoxi 99.6 2.1E-14 4.5E-19 103.2 9.5 71 15-90 1-71 (72)
49 TIGR02183 GRXA Glutaredoxin, G 99.6 1.5E-14 3.3E-19 108.6 8.7 72 16-92 2-80 (86)
50 PRK10329 glutaredoxin-like pro 99.5 1.8E-14 4E-19 106.7 7.9 69 245-319 2-72 (81)
51 TIGR02194 GlrX_NrdH Glutaredox 99.5 1.7E-14 3.7E-19 104.6 7.0 64 246-315 1-65 (72)
52 PF00462 Glutaredoxin: Glutare 99.5 5E-14 1.1E-18 98.4 7.9 60 16-80 1-60 (60)
53 cd03030 GRX_SH3BGR Glutaredoxi 99.5 1.1E-13 2.4E-18 104.6 8.3 70 31-100 18-91 (92)
54 PRK12759 bifunctional gluaredo 99.5 1.6E-13 3.5E-18 131.7 9.7 83 15-104 3-93 (410)
55 PRK10329 glutaredoxin-like pro 99.4 6.1E-13 1.3E-17 98.5 8.9 75 15-102 2-76 (81)
56 TIGR03143 AhpF_homolog putativ 99.4 1.9E-12 4E-17 129.6 12.7 172 3-202 357-540 (555)
57 TIGR02194 GlrX_NrdH Glutaredox 99.4 1E-12 2.2E-17 95.2 7.3 63 16-84 1-64 (72)
58 KOG2824 Glutaredoxin-related p 99.4 1.1E-12 2.5E-17 115.2 7.1 91 241-331 128-223 (281)
59 PTZ00102 disulphide isomerase; 99.4 3.8E-11 8.3E-16 118.0 18.4 90 4-102 39-137 (477)
60 PHA02278 thioredoxin-like prot 99.3 2.7E-12 5.8E-17 99.6 6.5 80 1-85 1-90 (103)
61 TIGR02196 GlrX_YruB Glutaredox 99.3 7.2E-12 1.6E-16 90.3 7.8 66 245-315 1-66 (74)
62 PF04908 SH3BGR: SH3-binding, 99.3 8.5E-12 1.8E-16 95.1 8.0 86 245-330 2-97 (99)
63 PRK15317 alkyl hydroperoxide r 99.3 4.5E-11 9.7E-16 118.8 15.0 160 3-202 10-180 (517)
64 TIGR03143 AhpF_homolog putativ 99.3 2.8E-11 6E-16 121.1 13.5 172 120-309 348-539 (555)
65 TIGR02196 GlrX_YruB Glutaredox 99.3 2E-11 4.3E-16 88.0 8.3 64 16-84 2-65 (74)
66 cd02954 DIM1 Dim1 family; Dim1 99.3 2.3E-11 5.1E-16 95.4 8.2 77 4-85 2-86 (114)
67 KOG0910 Thioredoxin-like prote 99.2 1.3E-11 2.8E-16 99.9 6.2 90 5-102 51-147 (150)
68 TIGR03140 AhpF alkyl hydropero 99.2 5.5E-11 1.2E-15 118.0 11.9 161 3-202 10-181 (515)
69 cd02976 NrdH NrdH-redoxin (Nrd 99.2 7.5E-11 1.6E-15 84.8 8.2 66 245-315 1-66 (73)
70 cd02985 TRX_CDSP32 TRX family, 99.2 8.5E-11 1.8E-15 91.3 8.1 90 4-102 3-102 (103)
71 cd02976 NrdH NrdH-redoxin (Nrd 99.2 1.2E-10 2.6E-15 83.7 8.3 65 15-84 1-65 (73)
72 cd02975 PfPDO_like_N Pyrococcu 99.1 1E-10 2.2E-15 92.4 6.9 91 2-101 10-108 (113)
73 TIGR02200 GlrX_actino Glutared 99.1 1.7E-10 3.7E-15 84.1 7.6 64 245-313 1-66 (77)
74 cd02989 Phd_like_TxnDC9 Phosdu 99.1 1.9E-10 4.1E-15 90.9 7.6 81 4-89 12-97 (113)
75 TIGR02200 GlrX_actino Glutared 99.1 5.6E-10 1.2E-14 81.4 8.4 65 15-84 1-67 (77)
76 cd03065 PDI_b_Calsequestrin_N 99.1 2.9E-10 6.2E-15 90.4 7.3 91 4-102 16-118 (120)
77 cd02948 TRX_NDPK TRX domain, T 99.1 4.3E-10 9.4E-15 87.1 8.1 88 3-100 6-100 (102)
78 cd02973 TRX_GRX_like Thioredox 99.1 3.4E-10 7.4E-15 80.5 6.8 58 245-311 2-64 (67)
79 KOG0907 Thioredoxin [Posttrans 99.1 4.2E-10 9.1E-15 87.5 7.4 84 10-102 17-105 (106)
80 PRK15317 alkyl hydroperoxide r 99.1 1.1E-09 2.3E-14 108.9 12.1 159 123-311 8-181 (517)
81 cd02957 Phd_like Phosducin (Ph 99.0 9.6E-10 2.1E-14 86.8 8.6 81 5-91 12-100 (113)
82 COG3118 Thioredoxin domain-con 99.0 4.6E-10 1E-14 100.5 6.8 81 14-103 44-130 (304)
83 TIGR03140 AhpF alkyl hydropero 99.0 8.5E-10 1.8E-14 109.6 9.5 158 123-312 8-183 (515)
84 cd02973 TRX_GRX_like Thioredox 99.0 6.9E-10 1.5E-14 78.9 6.0 58 15-81 2-64 (67)
85 cd02986 DLP Dim1 family, Dim1- 99.0 1.5E-09 3.1E-14 84.7 8.0 72 4-80 2-81 (114)
86 PRK10996 thioredoxin 2; Provis 99.0 1.4E-09 3.1E-14 89.1 8.0 91 4-102 42-138 (139)
87 cd02956 ybbN ybbN protein fami 99.0 6.5E-10 1.4E-14 84.8 5.6 85 6-99 2-95 (96)
88 KOG0190 Protein disulfide isom 99.0 2.9E-08 6.3E-13 95.7 18.0 294 4-330 32-355 (493)
89 cd03026 AhpF_NTD_C TRX-GRX-lik 99.0 1.2E-09 2.7E-14 82.3 6.6 71 124-203 2-77 (89)
90 cd02963 TRX_DnaJ TRX domain, D 99.0 1.7E-09 3.6E-14 85.2 7.4 72 25-101 32-110 (111)
91 TIGR01295 PedC_BrcD bacterioci 99.0 2E-09 4.3E-14 86.1 7.9 76 5-85 14-108 (122)
92 cd03003 PDI_a_ERdj5_N PDIa fam 99.0 1.1E-09 2.3E-14 84.5 6.0 77 4-85 8-90 (101)
93 cd02965 HyaE HyaE family; HyaE 99.0 1.2E-09 2.7E-14 85.1 5.8 80 4-88 17-104 (111)
94 PF00085 Thioredoxin: Thioredo 99.0 1.5E-09 3.2E-14 83.5 6.2 91 4-102 6-103 (103)
95 cd03006 PDI_a_EFP1_N PDIa fami 98.9 1.8E-09 3.8E-14 85.2 5.7 77 4-85 16-102 (113)
96 KOG0910 Thioredoxin-like prote 98.9 1.8E-09 3.8E-14 87.6 5.4 88 125-222 50-145 (150)
97 cd02949 TRX_NTR TRX domain, no 98.9 3.7E-09 7.9E-14 81.0 6.9 80 12-99 11-96 (97)
98 cd02984 TRX_PICOT TRX domain, 98.9 4.3E-09 9.2E-14 80.3 7.2 77 4-85 2-86 (97)
99 KOG2824 Glutaredoxin-related p 98.9 4.7E-09 1E-13 92.6 8.3 91 13-103 130-225 (281)
100 PTZ00051 thioredoxin; Provisio 98.9 3.8E-09 8.2E-14 80.8 6.8 78 4-86 8-90 (98)
101 cd02999 PDI_a_ERp44_like PDIa 98.9 3.2E-09 7E-14 81.9 6.2 76 5-86 7-90 (100)
102 PLN00410 U5 snRNP protein, DIM 98.9 8E-09 1.7E-13 84.2 8.1 79 3-85 10-97 (142)
103 cd02987 Phd_like_Phd Phosducin 98.8 7.9E-09 1.7E-13 87.9 7.6 77 5-88 71-156 (175)
104 TIGR01130 ER_PDI_fam protein d 98.8 1.9E-07 4.2E-12 91.1 17.7 91 4-102 8-108 (462)
105 cd03026 AhpF_NTD_C TRX-GRX-lik 98.8 1.4E-08 3.1E-13 76.5 7.3 70 233-311 3-77 (89)
106 cd02950 TxlA TRX-like protein 98.8 1.5E-08 3.3E-13 83.3 7.7 89 6-102 12-109 (142)
107 cd02996 PDI_a_ERp44 PDIa famil 98.8 9.6E-09 2.1E-13 80.2 6.2 71 4-79 8-90 (108)
108 cd02962 TMX2 TMX2 family; comp 98.8 1.8E-08 4E-13 83.5 8.1 77 4-85 35-126 (152)
109 cd02954 DIM1 Dim1 family; Dim1 98.8 1.7E-08 3.6E-13 79.3 7.3 70 127-203 3-82 (114)
110 PRK09381 trxA thioredoxin; Pro 98.8 1.8E-08 3.8E-13 78.8 7.3 90 5-102 11-107 (109)
111 cd03005 PDI_a_ERp46 PDIa famil 98.8 9.6E-09 2.1E-13 79.0 5.7 77 4-86 7-92 (102)
112 cd02953 DsbDgamma DsbD gamma f 98.8 7.5E-09 1.6E-13 80.2 4.9 77 5-86 2-93 (104)
113 PHA02278 thioredoxin-like prot 98.8 1.3E-08 2.8E-13 78.9 5.7 70 127-203 5-86 (103)
114 PHA02125 thioredoxin-like prot 98.8 2.1E-08 4.5E-13 73.1 6.5 61 16-86 2-62 (75)
115 cd03041 GST_N_2GST_N GST_N fam 98.8 8.2E-08 1.8E-12 70.2 9.3 71 246-321 2-74 (77)
116 cd02975 PfPDO_like_N Pyrococcu 98.7 2E-08 4.3E-13 79.3 6.3 67 123-197 9-81 (113)
117 cd02994 PDI_a_TMX PDIa family, 98.7 2.3E-08 5E-13 77.0 6.2 85 4-99 8-99 (101)
118 PF04908 SH3BGR: SH3-binding, 98.7 5.5E-08 1.2E-12 74.2 8.1 70 31-100 19-97 (99)
119 cd03007 PDI_a_ERp29_N PDIa fam 98.7 3.2E-08 6.9E-13 77.9 7.0 93 4-102 8-115 (116)
120 cd03000 PDI_a_TMX3 PDIa family 98.7 1.5E-08 3.3E-13 78.6 5.0 90 2-101 4-102 (104)
121 TIGR01068 thioredoxin thioredo 98.7 3.9E-08 8.5E-13 75.1 7.0 88 5-101 4-99 (101)
122 cd02985 TRX_CDSP32 TRX family, 98.7 6.2E-08 1.3E-12 75.1 7.8 72 127-202 4-84 (103)
123 COG3118 Thioredoxin domain-con 98.7 7.2E-08 1.6E-12 86.5 8.9 95 121-225 25-130 (304)
124 cd03004 PDI_a_ERdj5_C PDIa fam 98.7 4E-08 8.7E-13 76.0 6.4 77 4-85 8-92 (104)
125 PTZ00443 Thioredoxin domain-co 98.7 7E-08 1.5E-12 85.1 7.8 90 4-102 37-138 (224)
126 cd02997 PDI_a_PDIR PDIa family 98.7 3.9E-08 8.4E-13 75.8 5.4 76 5-85 8-93 (104)
127 KOG0908 Thioredoxin-like prote 98.7 5.3E-08 1.1E-12 84.8 6.5 88 6-102 11-105 (288)
128 cd02951 SoxW SoxW family; SoxW 98.6 8.7E-08 1.9E-12 76.8 7.3 91 4-102 3-118 (125)
129 cd03040 GST_N_mPGES2 GST_N fam 98.6 2.2E-07 4.9E-12 67.8 8.7 69 245-321 1-73 (77)
130 cd00570 GST_N_family Glutathio 98.6 1.5E-07 3.2E-12 66.3 7.3 68 247-319 2-69 (71)
131 TIGR00411 redox_disulf_1 small 98.6 1.2E-07 2.5E-12 69.9 6.8 55 137-200 2-62 (82)
132 cd02947 TRX_family TRX family; 98.6 1.1E-07 2.4E-12 70.7 6.6 75 6-85 2-81 (93)
133 cd03002 PDI_a_MPD1_like PDI fa 98.6 5.8E-08 1.3E-12 75.6 4.9 69 4-78 7-85 (109)
134 cd03065 PDI_b_Calsequestrin_N 98.6 1.2E-07 2.6E-12 75.4 6.6 73 124-202 14-100 (120)
135 TIGR01126 pdi_dom protein disu 98.6 8.5E-08 1.8E-12 73.5 5.6 90 4-101 3-100 (102)
136 KOG0191 Thioredoxin/protein di 98.6 1.8E-07 3.9E-12 89.6 8.3 158 26-201 56-230 (383)
137 TIGR00411 redox_disulf_1 small 98.6 2.7E-07 5.8E-12 67.9 7.4 56 15-79 2-63 (82)
138 cd03037 GST_N_GRX2 GST_N famil 98.5 5.1E-07 1.1E-11 64.8 8.2 68 247-321 2-70 (71)
139 cd02988 Phd_like_VIAF Phosduci 98.5 2.7E-07 5.9E-12 79.6 7.6 59 25-88 110-173 (192)
140 cd02989 Phd_like_TxnDC9 Phosdu 98.5 3.5E-07 7.5E-12 72.2 7.5 70 127-203 13-89 (113)
141 cd03006 PDI_a_EFP1_N PDIa fami 98.5 2.3E-07 5.1E-12 73.1 6.5 74 122-201 12-96 (113)
142 PTZ00102 disulphide isomerase; 98.5 5.8E-07 1.3E-11 88.4 10.6 173 8-195 243-435 (477)
143 cd03003 PDI_a_ERdj5_N PDIa fam 98.5 3E-07 6.5E-12 70.7 6.6 70 126-202 8-85 (101)
144 cd02959 ERp19 Endoplasmic reti 98.5 2.2E-07 4.7E-12 73.8 5.8 76 3-83 8-93 (117)
145 TIGR01295 PedC_BrcD bacterioci 98.5 4.1E-07 8.8E-12 72.8 7.3 76 126-204 13-105 (122)
146 PHA02125 thioredoxin-like prot 98.5 1.5E-07 3.3E-12 68.5 4.5 55 138-202 2-56 (75)
147 cd02948 TRX_NDPK TRX domain, T 98.5 3.9E-07 8.4E-12 70.4 7.0 70 125-202 6-84 (102)
148 cd02965 HyaE HyaE family; HyaE 98.5 2.9E-07 6.2E-12 71.8 6.0 79 121-204 12-98 (111)
149 cd02949 TRX_NTR TRX domain, no 98.5 2.1E-07 4.6E-12 71.1 5.2 64 132-202 9-80 (97)
150 PRK10996 thioredoxin 2; Provis 98.5 3.7E-07 8E-12 74.8 6.7 71 125-202 41-119 (139)
151 cd02952 TRP14_like Human TRX-r 98.5 3.3E-07 7.3E-12 72.7 6.1 75 4-84 9-107 (119)
152 KOG0190 Protein disulfide isom 98.5 1.2E-06 2.7E-11 84.5 10.9 172 117-305 23-208 (493)
153 cd02957 Phd_like Phosducin (Ph 98.4 7.4E-07 1.6E-11 70.2 7.4 70 127-204 12-91 (113)
154 cd02953 DsbDgamma DsbD gamma f 98.4 5.5E-07 1.2E-11 69.7 6.4 65 128-195 3-76 (104)
155 PF00085 Thioredoxin: Thioredo 98.4 3E-07 6.6E-12 70.4 4.6 70 127-203 7-85 (103)
156 cd03001 PDI_a_P5 PDIa family, 98.4 5.4E-07 1.2E-11 69.2 6.0 67 5-77 8-82 (103)
157 cd02996 PDI_a_ERp44 PDIa famil 98.4 5.9E-07 1.3E-11 70.0 6.0 68 126-200 8-89 (108)
158 cd02963 TRX_DnaJ TRX domain, D 98.4 7.9E-07 1.7E-11 69.9 6.7 61 135-202 23-92 (111)
159 cd03036 ArsC_like Arsenate Red 98.4 2.4E-07 5.1E-12 72.9 3.6 47 246-297 1-47 (111)
160 cd02956 ybbN ybbN protein fami 98.4 4.4E-07 9.4E-12 69.0 4.8 60 136-202 12-79 (96)
161 cd02962 TMX2 TMX2 family; comp 98.4 1.1E-06 2.5E-11 72.8 7.5 72 125-203 34-122 (152)
162 cd02986 DLP Dim1 family, Dim1- 98.4 1.2E-06 2.7E-11 68.3 7.2 61 135-202 13-81 (114)
163 TIGR00412 redox_disulf_2 small 98.4 1.4E-06 3.1E-11 63.5 6.9 55 245-310 2-60 (76)
164 cd02961 PDI_a_family Protein D 98.4 8E-07 1.7E-11 67.3 5.5 76 4-85 5-90 (101)
165 PTZ00051 thioredoxin; Provisio 98.3 1.2E-06 2.6E-11 66.8 6.4 71 126-203 8-85 (98)
166 KOG0907 Thioredoxin [Posttrans 98.3 1.8E-06 3.9E-11 67.1 7.3 69 127-202 12-87 (106)
167 cd03007 PDI_a_ERp29_N PDIa fam 98.3 1.2E-06 2.5E-11 69.1 6.3 76 124-200 6-91 (116)
168 cd03060 GST_N_Omega_like GST_N 98.3 2.9E-06 6.2E-11 60.9 7.8 67 247-319 2-69 (71)
169 cd03055 GST_N_Omega GST_N fami 98.3 3.2E-06 7E-11 63.6 8.0 72 243-320 16-88 (89)
170 cd03041 GST_N_2GST_N GST_N fam 98.3 4.1E-06 8.8E-11 61.2 8.3 68 16-88 2-71 (77)
171 cd03059 GST_N_SspA GST_N famil 98.3 3.5E-06 7.6E-11 60.5 7.8 69 247-321 2-70 (73)
172 cd02950 TxlA TRX-like protein 98.3 1.5E-06 3.2E-11 71.5 6.1 69 129-202 13-90 (142)
173 KOG4023 Uncharacterized conser 98.3 1.6E-06 3.5E-11 64.5 5.5 87 244-330 2-97 (108)
174 cd02998 PDI_a_ERp38 PDIa famil 98.3 8.1E-07 1.7E-11 68.3 3.9 67 5-77 8-85 (105)
175 TIGR00412 redox_disulf_2 small 98.3 2.1E-06 4.4E-11 62.7 5.8 49 27-80 8-60 (76)
176 cd02977 ArsC_family Arsenate R 98.3 7.4E-07 1.6E-11 69.3 3.6 49 246-299 1-49 (105)
177 cd02993 PDI_a_APS_reductase PD 98.3 2.8E-06 6.1E-11 66.4 6.7 68 5-77 9-88 (109)
178 cd02999 PDI_a_ERp44_like PDIa 98.2 3.8E-06 8.2E-11 64.7 7.1 54 135-195 17-76 (100)
179 cd02984 TRX_PICOT TRX domain, 98.2 3E-06 6.4E-11 64.4 6.5 69 127-202 3-81 (97)
180 cd02951 SoxW SoxW family; SoxW 98.2 2.8E-06 6E-11 68.0 6.4 70 127-199 4-93 (125)
181 cd03045 GST_N_Delta_Epsilon GS 98.2 7.5E-06 1.6E-10 59.0 8.0 69 247-320 2-72 (74)
182 cd03051 GST_N_GTT2_like GST_N 98.2 5.2E-06 1.1E-10 59.6 7.1 68 247-319 2-72 (74)
183 PLN00410 U5 snRNP protein, DIM 98.2 9.3E-06 2E-10 66.3 9.1 68 126-200 11-89 (142)
184 cd00570 GST_N_family Glutathio 98.2 5.3E-06 1.1E-10 58.2 6.8 67 17-88 2-68 (71)
185 PRK09381 trxA thioredoxin; Pro 98.2 3.9E-06 8.5E-11 65.4 6.4 66 131-203 16-89 (109)
186 KOG0912 Thiol-disulfide isomer 98.2 5.3E-05 1.1E-09 68.2 14.0 291 5-329 4-315 (375)
187 cd02987 Phd_like_Phd Phosducin 98.2 4.3E-06 9.4E-11 71.1 6.8 58 138-203 85-149 (175)
188 PRK01655 spxA transcriptional 98.2 2.9E-06 6.4E-11 68.6 5.5 43 246-293 2-44 (131)
189 cd03004 PDI_a_ERdj5_C PDIa fam 98.1 6.9E-06 1.5E-10 63.4 6.8 67 126-199 8-83 (104)
190 cd02995 PDI_a_PDI_a'_C PDIa fa 98.1 2.8E-06 6.1E-11 65.2 4.6 68 4-78 7-84 (104)
191 PF13192 Thioredoxin_3: Thiore 98.1 8.9E-06 1.9E-10 59.3 6.9 54 245-309 2-59 (76)
192 PF13417 GST_N_3: Glutathione 98.1 6.9E-06 1.5E-10 59.6 6.1 65 256-321 4-68 (75)
193 cd02992 PDI_a_QSOX PDIa family 98.1 5.1E-06 1.1E-10 65.6 5.7 72 4-80 8-91 (114)
194 PF05768 DUF836: Glutaredoxin- 98.1 1.4E-05 3.1E-10 59.0 7.8 53 245-307 1-57 (81)
195 cd03037 GST_N_GRX2 GST_N famil 98.1 1.5E-05 3.2E-10 57.1 7.6 65 18-89 3-68 (71)
196 cd03056 GST_N_4 GST_N family, 98.1 1.8E-05 3.9E-10 56.6 8.1 68 247-319 2-71 (73)
197 cd02959 ERp19 Endoplasmic reti 98.1 4.5E-06 9.8E-11 66.2 5.2 73 125-203 8-91 (117)
198 cd03040 GST_N_mPGES2 GST_N fam 98.1 2.2E-05 4.8E-10 57.1 8.4 65 15-87 1-69 (77)
199 TIGR01068 thioredoxin thioredo 98.1 7.9E-06 1.7E-10 62.1 6.3 68 128-202 5-81 (101)
200 cd02994 PDI_a_TMX PDIa family, 98.1 7.9E-06 1.7E-10 62.7 6.1 66 126-200 8-82 (101)
201 cd02947 TRX_family TRX family; 98.1 5.1E-06 1.1E-10 61.5 4.8 67 129-202 3-76 (93)
202 TIGR00424 APS_reduc 5'-adenyly 98.1 1E-05 2.2E-10 78.5 7.5 70 4-78 358-439 (463)
203 PF13192 Thioredoxin_3: Thiore 98.1 8.2E-06 1.8E-10 59.5 5.2 49 149-202 8-60 (76)
204 TIGR01617 arsC_related transcr 98.0 8.5E-06 1.8E-10 64.6 5.1 45 246-295 1-45 (117)
205 cd02997 PDI_a_PDIR PDIa family 98.0 1.2E-05 2.7E-10 61.6 5.6 69 127-202 8-88 (104)
206 cd03032 ArsC_Spx Arsenate Redu 98.0 8.2E-06 1.8E-10 64.5 4.6 46 246-296 2-47 (115)
207 KOG0191 Thioredoxin/protein di 98.0 3.8E-05 8.2E-10 73.6 9.7 158 130-305 41-224 (383)
208 cd02993 PDI_a_APS_reductase PD 98.0 2E-05 4.2E-10 61.6 6.2 63 127-195 9-82 (109)
209 cd03060 GST_N_Omega_like GST_N 98.0 4.1E-05 9E-10 54.8 7.4 64 17-86 2-66 (71)
210 PRK12559 transcriptional regul 98.0 9.8E-06 2.1E-10 65.5 4.4 44 246-294 2-45 (131)
211 TIGR01126 pdi_dom protein disu 97.9 2.3E-05 5.1E-10 59.7 6.2 64 127-197 4-75 (102)
212 cd03002 PDI_a_MPD1_like PDI fa 97.9 1.8E-05 3.9E-10 61.4 5.6 67 127-200 8-85 (109)
213 cd03001 PDI_a_P5 PDIa family, 97.9 2.6E-05 5.6E-10 59.8 5.9 62 127-195 8-76 (103)
214 PTZ00443 Thioredoxin domain-co 97.9 2.1E-05 4.6E-10 69.4 5.9 74 122-202 33-119 (224)
215 PRK13344 spxA transcriptional 97.9 1.5E-05 3.2E-10 64.6 4.3 34 246-284 2-35 (132)
216 cd03000 PDI_a_TMX3 PDIa family 97.9 2.6E-05 5.7E-10 60.2 5.4 67 125-199 5-81 (104)
217 PF13098 Thioredoxin_2: Thiore 97.9 1.5E-05 3.3E-10 62.2 4.0 68 26-99 14-112 (112)
218 PF05768 DUF836: Glutaredoxin- 97.9 5.7E-05 1.2E-09 55.7 6.8 53 15-77 1-57 (81)
219 PLN02309 5'-adenylylsulfate re 97.8 3.5E-05 7.7E-10 74.8 7.0 70 4-78 352-433 (457)
220 cd02955 SSP411 TRX domain, SSP 97.8 8.6E-05 1.9E-09 59.4 8.0 78 4-85 5-99 (124)
221 cd03035 ArsC_Yffb Arsenate Red 97.8 1.7E-05 3.7E-10 61.6 3.7 35 246-285 1-35 (105)
222 cd02952 TRP14_like Human TRX-r 97.8 3.7E-05 8E-10 61.0 5.6 48 149-196 38-95 (119)
223 cd03054 GST_N_Metaxin GST_N fa 97.8 0.00013 2.8E-09 52.3 8.0 58 257-322 14-71 (72)
224 cd03061 GST_N_CLIC GST_N famil 97.8 0.00014 3.1E-09 54.8 8.4 76 245-321 5-83 (91)
225 cd03005 PDI_a_ERp46 PDIa famil 97.8 4.7E-05 1E-09 58.2 6.0 68 127-202 8-86 (102)
226 cd02988 Phd_like_VIAF Phosduci 97.8 5.4E-05 1.2E-09 65.4 6.8 67 127-203 91-166 (192)
227 cd03036 ArsC_like Arsenate Red 97.8 2.5E-05 5.4E-10 61.3 4.3 43 16-63 1-43 (111)
228 KOG4277 Uncharacterized conser 97.8 3.8E-05 8.2E-10 68.9 5.7 55 24-80 50-113 (468)
229 cd03059 GST_N_SspA GST_N famil 97.8 0.00011 2.4E-09 52.5 7.3 66 17-88 2-67 (73)
230 PRK11509 hydrogenase-1 operon 97.8 7E-05 1.5E-09 60.3 6.3 90 6-102 26-123 (132)
231 cd02977 ArsC_family Arsenate R 97.7 3.6E-05 7.7E-10 59.8 4.3 45 16-65 1-45 (105)
232 cd02961 PDI_a_family Protein D 97.7 8.1E-05 1.8E-09 56.1 6.2 64 127-197 6-77 (101)
233 cd03033 ArsC_15kD Arsenate Red 97.7 3.4E-05 7.3E-10 60.7 4.1 34 246-284 2-35 (113)
234 TIGR01130 ER_PDI_fam protein d 97.7 7.5E-05 1.6E-09 72.9 7.5 70 125-201 7-87 (462)
235 cd02998 PDI_a_ERp38 PDIa famil 97.7 5.9E-05 1.3E-09 57.8 5.1 63 128-197 9-81 (105)
236 PRK00293 dipZ thiol:disulfide 97.7 8E-05 1.7E-09 74.9 7.1 73 25-102 482-569 (571)
237 TIGR00424 APS_reduc 5'-adenyly 97.7 0.00011 2.5E-09 71.3 7.6 77 119-200 351-439 (463)
238 cd03058 GST_N_Tau GST_N family 97.7 0.0003 6.6E-09 50.6 8.1 69 247-321 2-71 (74)
239 cd03055 GST_N_Omega GST_N fami 97.7 0.00027 5.8E-09 53.0 8.0 68 14-87 17-85 (89)
240 cd03053 GST_N_Phi GST_N family 97.7 0.00035 7.7E-09 50.4 8.3 71 246-321 2-74 (76)
241 PF13417 GST_N_3: Glutathione 97.7 0.00017 3.7E-09 52.2 6.6 60 28-88 6-65 (75)
242 cd03045 GST_N_Delta_Epsilon GS 97.6 0.00023 5E-09 51.1 7.1 65 17-86 2-68 (74)
243 cd02955 SSP411 TRX domain, SSP 97.6 0.00021 4.5E-09 57.2 7.3 73 128-203 7-95 (124)
244 cd03052 GST_N_GDAP1 GST_N fami 97.6 0.00032 7E-09 50.6 7.4 68 247-319 2-71 (73)
245 cd02982 PDI_b'_family Protein 97.6 0.00015 3.2E-09 55.6 5.9 62 13-80 12-83 (103)
246 cd03076 GST_N_Pi GST_N family, 97.6 0.00064 1.4E-08 48.9 8.7 70 246-321 2-71 (73)
247 PRK01655 spxA transcriptional 97.6 0.00015 3.2E-09 58.7 5.7 44 16-64 2-45 (131)
248 cd03051 GST_N_GTT2_like GST_N 97.6 0.00025 5.5E-09 50.6 6.5 57 28-84 8-67 (74)
249 PF13098 Thioredoxin_2: Thiore 97.6 0.00012 2.5E-09 57.2 4.8 64 136-202 5-96 (112)
250 COG3634 AhpF Alkyl hydroperoxi 97.5 0.0038 8.2E-08 57.8 14.8 181 2-224 5-194 (520)
251 cd03056 GST_N_4 GST_N family, 97.5 0.00044 9.5E-09 49.3 7.2 59 28-86 8-68 (73)
252 TIGR02738 TrbB type-F conjugat 97.5 0.00038 8.3E-09 57.8 7.6 29 25-53 58-90 (153)
253 cd03039 GST_N_Sigma_like GST_N 97.5 0.00064 1.4E-08 48.6 7.7 65 256-320 6-70 (72)
254 cd02992 PDI_a_QSOX PDIa family 97.5 0.00027 5.8E-09 55.7 5.8 64 126-196 8-83 (114)
255 cd03042 GST_N_Zeta GST_N famil 97.4 0.00069 1.5E-08 48.3 7.3 64 256-319 6-71 (73)
256 cd02995 PDI_a_PDI_a'_C PDIa fa 97.4 0.00029 6.2E-09 53.8 5.4 66 127-200 8-84 (104)
257 PRK00293 dipZ thiol:disulfide 97.4 0.00041 8.9E-09 69.8 7.9 75 123-201 461-547 (571)
258 cd01659 TRX_superfamily Thiore 97.4 0.00048 1E-08 46.4 5.9 49 28-77 8-61 (69)
259 PLN02309 5'-adenylylsulfate re 97.4 0.00046 1E-08 67.1 7.6 72 123-200 349-433 (457)
260 TIGR00385 dsbE periplasmic pro 97.4 0.00029 6.3E-09 59.8 5.5 37 14-53 63-102 (173)
261 PRK14018 trifunctional thiored 97.4 0.00027 5.9E-09 69.7 6.0 83 13-103 55-173 (521)
262 cd03049 GST_N_3 GST_N family, 97.4 0.00066 1.4E-08 48.6 6.6 67 247-319 2-71 (73)
263 PRK15412 thiol:disulfide inter 97.4 0.00042 9.1E-09 59.5 6.5 40 13-55 67-109 (185)
264 KOG0908 Thioredoxin-like prote 97.4 0.00019 4.1E-09 63.0 4.1 60 136-202 21-87 (288)
265 TIGR02740 TraF-like TraF-like 97.4 0.00052 1.1E-08 62.5 7.2 50 25-76 174-238 (271)
266 cd03008 TryX_like_RdCVF Trypar 97.4 0.001 2.2E-08 54.8 8.1 26 135-163 24-49 (146)
267 cd03080 GST_N_Metaxin_like GST 97.4 0.0013 2.8E-08 47.5 7.8 56 258-321 16-71 (75)
268 COG4545 Glutaredoxin-related p 97.3 0.00085 1.8E-08 47.6 6.2 61 257-318 10-83 (85)
269 KOG3029 Glutathione S-transfer 97.3 0.00086 1.9E-08 59.8 7.6 58 15-80 90-147 (370)
270 TIGR01617 arsC_related transcr 97.3 0.00047 1E-08 54.6 5.5 59 17-80 2-63 (117)
271 cd03009 TryX_like_TryX_NRX Try 97.3 0.00057 1.2E-08 54.9 6.0 30 25-54 26-64 (131)
272 cd03054 GST_N_Metaxin GST_N fa 97.3 0.00096 2.1E-08 47.7 6.5 54 27-88 14-67 (72)
273 PF14595 Thioredoxin_9: Thiore 97.3 0.00016 3.5E-09 58.3 2.7 74 5-84 34-115 (129)
274 COG1393 ArsC Arsenate reductas 97.3 0.00034 7.4E-09 55.3 4.2 44 245-293 2-45 (117)
275 cd01659 TRX_superfamily Thiore 97.3 0.00074 1.6E-08 45.4 5.5 50 149-199 7-61 (69)
276 cd02964 TryX_like_family Trypa 97.3 0.00073 1.6E-08 54.5 6.2 38 14-54 17-63 (132)
277 PF14595 Thioredoxin_9: Thiore 97.3 9.9E-05 2.1E-09 59.5 1.0 70 122-197 29-103 (129)
278 KOG3029 Glutathione S-transfer 97.2 0.0013 2.9E-08 58.6 8.0 59 136-202 89-147 (370)
279 cd03032 ArsC_Spx Arsenate Redu 97.2 0.00073 1.6E-08 53.3 5.7 42 16-62 2-43 (115)
280 cd03048 GST_N_Ure2p_like GST_N 97.2 0.0027 5.9E-08 46.4 8.3 70 246-321 2-76 (81)
281 cd03035 ArsC_Yffb Arsenate Red 97.2 0.00035 7.7E-09 54.2 3.6 35 138-177 1-35 (105)
282 PF13899 Thioredoxin_7: Thiore 97.2 0.0015 3.3E-08 48.1 6.6 64 2-70 5-77 (82)
283 cd02964 TryX_like_family Trypa 97.2 0.0012 2.6E-08 53.3 6.5 64 136-202 17-113 (132)
284 PRK12559 transcriptional regul 97.2 0.00079 1.7E-08 54.4 5.4 36 16-56 2-37 (131)
285 PRK10026 arsenate reductase; P 97.2 0.0005 1.1E-08 56.1 4.2 44 244-292 2-45 (141)
286 TIGR02182 GRXB Glutaredoxin, G 97.1 0.0016 3.4E-08 57.0 7.5 65 256-322 5-70 (209)
287 TIGR01616 nitro_assoc nitrogen 97.1 0.00062 1.3E-08 54.6 4.3 35 245-284 2-36 (126)
288 cd03038 GST_N_etherase_LigE GS 97.1 0.0016 3.4E-08 48.1 6.1 65 256-321 13-80 (84)
289 KOG4277 Uncharacterized conser 97.1 0.0014 3E-08 59.1 6.6 70 125-202 33-112 (468)
290 cd03010 TlpA_like_DsbE TlpA-li 97.1 0.0013 2.8E-08 52.4 6.0 28 25-52 33-64 (127)
291 PF13409 GST_N_2: Glutathione 97.1 0.0008 1.7E-08 48.0 4.2 64 258-321 1-68 (70)
292 cd03009 TryX_like_TryX_NRX Try 97.1 0.0016 3.4E-08 52.3 6.4 63 137-202 19-113 (131)
293 PRK10853 putative reductase; P 97.1 0.00064 1.4E-08 53.9 4.0 34 246-284 2-35 (118)
294 TIGR02738 TrbB type-F conjugat 97.1 0.00098 2.1E-08 55.4 5.3 51 147-197 58-124 (153)
295 cd03061 GST_N_CLIC GST_N famil 97.1 0.0024 5.2E-08 48.1 6.8 61 26-87 19-79 (91)
296 PRK13344 spxA transcriptional 97.0 0.001 2.3E-08 53.8 5.0 35 16-55 2-36 (132)
297 PRK10387 glutaredoxin 2; Provi 97.0 0.0027 5.9E-08 55.1 7.8 69 247-322 2-71 (210)
298 cd03050 GST_N_Theta GST_N fami 97.0 0.0048 1E-07 44.5 7.8 70 247-321 2-73 (76)
299 cd03033 ArsC_15kD Arsenate Red 97.0 0.00086 1.9E-08 52.8 4.0 42 137-183 1-42 (113)
300 PRK14018 trifunctional thiored 97.0 0.0011 2.5E-08 65.4 5.6 26 135-163 55-80 (521)
301 PRK15412 thiol:disulfide inter 97.0 0.003 6.5E-08 54.2 7.5 47 135-184 67-117 (185)
302 PRK10877 protein disulfide iso 97.0 0.0015 3.3E-08 58.2 5.7 25 15-42 108-132 (232)
303 TIGR00014 arsC arsenate reduct 96.9 0.00079 1.7E-08 53.1 3.3 43 246-293 1-43 (114)
304 cd03034 ArsC_ArsC Arsenate Red 96.9 0.00099 2.1E-08 52.3 3.8 34 246-284 1-34 (112)
305 KOG0912 Thiol-disulfide isomer 96.9 0.0062 1.3E-07 55.2 9.0 69 127-202 4-85 (375)
306 cd03044 GST_N_EF1Bgamma GST_N 96.9 0.0049 1.1E-07 44.4 7.1 65 256-320 6-72 (75)
307 cd03008 TryX_like_RdCVF Trypar 96.9 0.0023 5.1E-08 52.6 6.0 46 14-62 25-85 (146)
308 cd03052 GST_N_GDAP1 GST_N fami 96.9 0.0047 1E-07 44.4 6.9 60 28-87 8-69 (73)
309 PRK10877 protein disulfide iso 96.9 0.0031 6.7E-08 56.1 6.9 74 243-321 108-228 (232)
310 cd03053 GST_N_Phi GST_N family 96.8 0.0077 1.7E-07 43.3 7.6 67 17-88 3-71 (76)
311 PF06110 DUF953: Eukaryotic pr 96.8 0.0029 6.4E-08 50.0 5.3 56 25-82 34-104 (119)
312 TIGR02740 TraF-like TraF-like 96.8 0.0044 9.5E-08 56.5 7.2 58 136-197 166-235 (271)
313 cd03076 GST_N_Pi GST_N family, 96.7 0.013 2.9E-07 41.9 8.2 67 16-88 2-68 (73)
314 cd02967 mauD Methylamine utili 96.7 0.0052 1.1E-07 47.8 6.2 55 137-196 22-83 (114)
315 PRK09481 sspA stringent starva 96.7 0.0076 1.6E-07 52.6 7.9 71 244-320 9-79 (211)
316 cd03047 GST_N_2 GST_N family, 96.7 0.013 2.8E-07 41.9 7.7 64 256-319 6-71 (73)
317 cd02958 UAS UAS family; UAS is 96.6 0.0053 1.2E-07 48.1 6.0 91 3-102 6-110 (114)
318 cd03043 GST_N_1 GST_N family, 96.6 0.011 2.5E-07 42.3 7.2 64 256-319 7-71 (73)
319 cd03039 GST_N_Sigma_like GST_N 96.6 0.013 2.7E-07 41.7 7.4 60 28-87 8-67 (72)
320 COG3634 AhpF Alkyl hydroperoxi 96.6 0.037 8.1E-07 51.4 12.0 84 230-322 104-196 (520)
321 PF13728 TraF: F plasmid trans 96.6 0.0072 1.6E-07 53.1 7.3 64 125-197 111-189 (215)
322 cd03010 TlpA_like_DsbE TlpA-li 96.6 0.008 1.7E-07 47.8 6.8 36 136-174 25-64 (127)
323 cd03058 GST_N_Tau GST_N family 96.6 0.014 3.1E-07 41.7 7.3 59 28-87 8-67 (74)
324 COG4545 Glutaredoxin-related p 96.5 0.007 1.5E-07 43.0 5.2 55 149-204 10-78 (85)
325 KOG3425 Uncharacterized conser 96.5 0.0076 1.6E-07 47.0 5.8 46 25-70 41-99 (128)
326 PF13728 TraF: F plasmid trans 96.5 0.01 2.3E-07 52.1 7.3 63 4-75 112-189 (215)
327 PRK03147 thiol-disulfide oxido 96.5 0.0061 1.3E-07 51.2 5.7 30 25-54 69-105 (173)
328 PLN02919 haloacid dehalogenase 96.4 0.005 1.1E-07 66.4 6.2 26 14-42 420-445 (1057)
329 cd03049 GST_N_3 GST_N family, 96.4 0.015 3.2E-07 41.5 6.8 58 28-86 8-68 (73)
330 COG2143 Thioredoxin-related pr 96.4 0.015 3.2E-07 47.7 7.3 92 3-102 31-148 (182)
331 PF13899 Thioredoxin_7: Thiore 96.4 0.012 2.5E-07 43.2 6.2 66 124-197 5-79 (82)
332 cd02967 mauD Methylamine utili 96.4 0.0099 2.2E-07 46.2 6.1 55 14-74 22-83 (114)
333 TIGR00862 O-ClC intracellular 96.4 0.02 4.2E-07 51.1 8.6 75 246-321 3-80 (236)
334 cd03046 GST_N_GTT1_like GST_N 96.4 0.024 5.3E-07 40.5 7.6 62 260-321 9-72 (76)
335 PF02114 Phosducin: Phosducin; 96.3 0.01 2.2E-07 53.8 6.7 93 5-104 134-239 (265)
336 cd03020 DsbA_DsbC_DsbG DsbA fa 96.3 0.014 3E-07 50.5 7.3 71 243-318 78-192 (197)
337 cd03042 GST_N_Zeta GST_N famil 96.3 0.017 3.8E-07 40.9 6.7 59 28-86 8-68 (73)
338 cd03057 GST_N_Beta GST_N famil 96.3 0.025 5.3E-07 40.7 7.5 63 257-320 7-72 (77)
339 cd02960 AGR Anterior Gradient 96.2 0.0085 1.8E-07 48.2 5.0 47 3-52 12-65 (130)
340 cd02966 TlpA_like_family TlpA- 96.2 0.0085 1.8E-07 45.7 4.9 37 26-62 28-73 (116)
341 PRK13728 conjugal transfer pro 96.2 0.015 3.2E-07 49.6 6.6 34 15-53 72-109 (181)
342 cd02982 PDI_b'_family Protein 96.2 0.0092 2E-07 45.4 5.0 45 149-197 22-74 (103)
343 cd03038 GST_N_etherase_LigE GS 96.2 0.011 2.3E-07 43.6 5.1 62 26-88 13-77 (84)
344 cd03011 TlpA_like_ScsD_MtbDsbE 96.1 0.011 2.3E-07 46.7 5.1 17 26-42 29-45 (123)
345 PF13409 GST_N_2: Glutathione 96.1 0.011 2.4E-07 42.0 4.6 61 28-88 1-65 (70)
346 cd02958 UAS UAS family; UAS is 96.1 0.012 2.5E-07 46.1 5.2 69 125-198 6-84 (114)
347 PLN02817 glutathione dehydroge 96.1 0.012 2.5E-07 53.6 5.7 63 258-321 72-134 (265)
348 TIGR02661 MauD methylamine deh 96.1 0.012 2.5E-07 50.7 5.3 34 136-172 74-111 (189)
349 COG0526 TrxA Thiol-disulfide i 96.0 0.011 2.3E-07 44.9 4.7 55 25-80 40-102 (127)
350 PRK03147 thiol-disulfide oxido 96.0 0.014 3E-07 49.1 5.6 56 147-202 69-152 (173)
351 PF03960 ArsC: ArsC family; I 96.0 0.0085 1.9E-07 46.8 4.0 36 256-291 3-38 (110)
352 PRK10026 arsenate reductase; P 96.0 0.0091 2E-07 48.8 4.1 43 137-184 3-49 (141)
353 TIGR02182 GRXB Glutaredoxin, G 96.0 0.023 5E-07 49.6 6.9 59 28-88 7-66 (209)
354 PRK11509 hydrogenase-1 operon 96.0 0.022 4.7E-07 46.0 6.1 71 128-204 26-106 (132)
355 TIGR01616 nitro_assoc nitrogen 96.0 0.01 2.2E-07 47.6 4.2 36 137-177 2-37 (126)
356 PF13905 Thioredoxin_8: Thiore 95.9 0.017 3.7E-07 43.3 5.3 38 25-62 9-55 (95)
357 COG1393 ArsC Arsenate reductas 95.9 0.01 2.2E-07 47.0 3.9 41 138-183 3-43 (117)
358 TIGR02661 MauD methylamine deh 95.9 0.037 8E-07 47.6 7.8 27 25-51 82-112 (189)
359 cd03080 GST_N_Metaxin_like GST 95.8 0.055 1.2E-06 38.8 7.3 53 28-88 16-68 (75)
360 COG4232 Thiol:disulfide interc 95.8 0.016 3.5E-07 57.2 5.5 90 6-102 464-567 (569)
361 PRK10853 putative reductase; P 95.8 0.011 2.5E-07 46.7 3.7 42 138-184 2-47 (118)
362 cd03034 ArsC_ArsC Arsenate Red 95.7 0.012 2.5E-07 46.2 3.7 35 138-177 1-35 (112)
363 TIGR00014 arsC arsenate reduct 95.7 0.013 2.7E-07 46.2 3.7 35 138-177 1-35 (114)
364 KOG4023 Uncharacterized conser 95.7 0.016 3.4E-07 43.6 3.9 85 15-102 3-99 (108)
365 COG4232 Thiol:disulfide interc 95.7 0.022 4.7E-07 56.4 6.0 88 128-222 464-565 (569)
366 cd03048 GST_N_Ure2p_like GST_N 95.7 0.058 1.2E-06 39.2 7.0 59 29-87 9-72 (81)
367 PRK10387 glutaredoxin 2; Provi 95.7 0.04 8.7E-07 47.7 7.2 63 17-86 2-65 (210)
368 COG3019 Predicted metal-bindin 95.7 0.067 1.5E-06 43.0 7.6 77 243-324 25-104 (149)
369 PF08534 Redoxin: Redoxin; In 95.6 0.041 8.8E-07 44.8 6.7 56 13-74 28-91 (146)
370 PF06110 DUF953: Eukaryotic pr 95.6 0.031 6.6E-07 44.3 5.6 70 125-197 8-95 (119)
371 TIGR02739 TraF type-F conjugat 95.5 0.045 9.7E-07 49.3 7.1 64 125-197 141-219 (256)
372 cd02972 DsbA_family DsbA famil 95.5 0.026 5.6E-07 41.8 4.8 57 246-307 1-91 (98)
373 PRK15113 glutathione S-transfe 95.5 0.074 1.6E-06 46.4 8.4 72 245-319 5-78 (214)
374 cd03020 DsbA_DsbC_DsbG DsbA fa 95.5 0.05 1.1E-06 47.0 7.2 21 187-207 168-189 (197)
375 cd03012 TlpA_like_DipZ_like Tl 95.5 0.048 1E-06 43.4 6.5 30 129-163 18-47 (126)
376 cd02966 TlpA_like_family TlpA- 95.4 0.032 7E-07 42.4 5.2 29 148-176 28-63 (116)
377 KOG3425 Uncharacterized conser 95.4 0.067 1.5E-06 41.9 6.6 73 123-199 13-103 (128)
378 PLN02378 glutathione S-transfe 95.4 0.051 1.1E-06 47.5 7.0 64 257-321 18-81 (213)
379 PF11009 DUF2847: Protein of u 95.4 0.11 2.3E-06 40.1 7.8 74 3-81 6-92 (105)
380 cd03050 GST_N_Theta GST_N fami 95.4 0.088 1.9E-06 37.7 7.1 59 28-86 8-68 (76)
381 PF13905 Thioredoxin_8: Thiore 95.4 0.021 4.5E-07 42.8 3.8 47 137-186 2-57 (95)
382 TIGR00385 dsbE periplasmic pro 95.3 0.065 1.4E-06 45.3 7.2 38 135-175 62-102 (173)
383 PF03190 Thioredox_DsbH: Prote 95.3 0.035 7.5E-07 46.4 5.2 94 4-102 27-140 (163)
384 cd02970 PRX_like2 Peroxiredoxi 95.3 0.083 1.8E-06 42.8 7.5 62 8-74 18-86 (149)
385 PRK13728 conjugal transfer pro 95.2 0.048 1E-06 46.5 5.9 55 246-305 73-142 (181)
386 PRK13703 conjugal pilus assemb 95.2 0.068 1.5E-06 47.9 7.1 67 125-197 134-212 (248)
387 cd03043 GST_N_1 GST_N family, 95.2 0.11 2.4E-06 37.1 6.9 60 27-86 8-68 (73)
388 PLN02473 glutathione S-transfe 95.1 0.1 2.2E-06 45.4 7.9 70 246-320 3-74 (214)
389 TIGR02739 TraF type-F conjugat 95.1 0.081 1.8E-06 47.6 7.3 46 4-54 142-191 (256)
390 cd03044 GST_N_EF1Bgamma GST_N 95.0 0.086 1.9E-06 37.7 6.0 59 28-86 8-68 (75)
391 PTZ00056 glutathione peroxidas 95.0 0.058 1.3E-06 46.8 5.9 56 14-74 39-109 (199)
392 cd03047 GST_N_2 GST_N family, 94.9 0.15 3.3E-06 36.2 7.1 57 28-84 8-66 (73)
393 cd03023 DsbA_Com1_like DsbA fa 94.9 0.081 1.8E-06 43.0 6.3 26 295-320 125-150 (154)
394 cd02969 PRX_like1 Peroxiredoxi 94.7 0.22 4.9E-06 41.7 8.8 22 229-250 140-161 (171)
395 PRK13703 conjugal pilus assemb 94.7 0.12 2.7E-06 46.2 7.4 45 4-53 135-183 (248)
396 cd03023 DsbA_Com1_like DsbA fa 94.7 0.15 3.2E-06 41.4 7.5 21 188-208 126-146 (154)
397 PRK09481 sspA stringent starva 94.7 0.13 2.8E-06 44.8 7.4 61 16-82 11-71 (211)
398 cd03011 TlpA_like_ScsD_MtbDsbE 94.7 0.012 2.7E-07 46.3 0.8 16 148-163 29-44 (123)
399 smart00594 UAS UAS domain. 94.7 0.14 3.1E-06 40.6 7.0 63 3-70 16-90 (122)
400 cd03077 GST_N_Alpha GST_N fami 94.6 0.33 7.1E-06 35.2 8.3 63 257-320 8-72 (79)
401 COG2143 Thioredoxin-related pr 94.5 0.12 2.5E-06 42.6 6.1 72 125-199 31-124 (182)
402 TIGR01262 maiA maleylacetoacet 94.5 0.1 2.3E-06 45.1 6.4 66 256-321 5-73 (210)
403 cd03012 TlpA_like_DipZ_like Tl 94.4 0.12 2.7E-06 40.9 6.1 17 25-41 31-47 (126)
404 COG3019 Predicted metal-bindin 94.3 0.15 3.2E-06 41.0 6.1 61 136-205 26-90 (149)
405 cd02970 PRX_like2 Peroxiredoxi 94.2 0.19 4.1E-06 40.7 7.0 63 129-196 17-86 (149)
406 PTZ00056 glutathione peroxidas 94.2 0.11 2.4E-06 45.1 5.7 55 136-195 39-108 (199)
407 PRK11657 dsbG disulfide isomer 94.1 0.15 3.2E-06 46.0 6.6 31 245-280 120-154 (251)
408 TIGR00862 O-ClC intracellular 94.1 0.17 3.6E-06 45.2 6.8 59 27-86 17-75 (236)
409 KOG2501 Thioredoxin, nucleored 94.1 0.061 1.3E-06 44.4 3.7 25 14-41 33-57 (157)
410 smart00594 UAS UAS domain. 94.1 0.23 5.1E-06 39.3 7.0 73 121-198 12-94 (122)
411 cd00340 GSH_Peroxidase Glutath 94.0 0.1 2.3E-06 42.9 5.0 56 14-74 22-92 (152)
412 COG0526 TrxA Thiol-disulfide i 93.9 0.13 2.7E-06 38.7 5.1 61 136-201 32-101 (127)
413 KOG0406 Glutathione S-transfer 93.9 0.22 4.8E-06 44.0 7.0 71 244-320 8-79 (231)
414 cd03079 GST_N_Metaxin2 GST_N f 93.9 0.18 4E-06 36.3 5.4 57 258-321 16-72 (74)
415 KOG0913 Thiol-disulfide isomer 93.8 0.028 6E-07 49.2 1.3 54 25-80 47-107 (248)
416 TIGR01626 ytfJ_HI0045 conserve 93.8 0.14 3E-06 43.9 5.5 38 14-54 59-105 (184)
417 COG2999 GrxB Glutaredoxin 2 [P 93.8 0.1 2.2E-06 43.8 4.4 60 258-319 8-68 (215)
418 PF08534 Redoxin: Redoxin; In 93.7 0.18 4E-06 40.9 6.0 49 133-185 26-82 (146)
419 TIGR02540 gpx7 putative glutat 93.6 0.14 3E-06 42.2 5.2 49 25-74 30-93 (153)
420 PTZ00256 glutathione peroxidas 93.5 0.15 3.2E-06 43.5 5.3 48 25-73 49-111 (183)
421 PLN02919 haloacid dehalogenase 93.5 0.13 2.8E-06 55.8 5.9 25 136-163 420-444 (1057)
422 PLN02378 glutathione S-transfe 93.4 0.23 5E-06 43.3 6.6 54 27-81 18-71 (213)
423 PTZ00256 glutathione peroxidas 93.3 0.19 4.1E-06 42.9 5.7 62 129-195 35-111 (183)
424 PF03960 ArsC: ArsC family; I 93.3 0.12 2.6E-06 40.2 4.0 38 149-186 4-45 (110)
425 KOG4244 Failed axon connection 92.9 0.21 4.5E-06 44.7 5.3 56 253-316 54-110 (281)
426 PF11009 DUF2847: Protein of u 92.9 0.55 1.2E-05 36.2 7.0 72 127-202 8-91 (105)
427 cd02960 AGR Anterior Gradient 92.8 0.18 3.9E-06 40.6 4.3 36 123-161 10-45 (130)
428 PLN02412 probable glutathione 92.8 0.33 7.2E-06 40.7 6.3 56 15-74 30-100 (167)
429 cd03057 GST_N_Beta GST_N famil 92.7 0.51 1.1E-05 33.7 6.4 56 31-86 10-68 (77)
430 cd03046 GST_N_GTT1_like GST_N 92.7 0.54 1.2E-05 33.3 6.5 59 30-88 9-69 (76)
431 PLN02399 phospholipid hydroper 92.7 0.26 5.6E-06 44.0 5.6 55 15-73 100-169 (236)
432 KOG0406 Glutathione S-transfer 92.6 0.54 1.2E-05 41.5 7.5 65 14-84 8-73 (231)
433 COG2999 GrxB Glutaredoxin 2 [P 92.5 0.15 3.4E-06 42.7 3.8 55 28-84 8-63 (215)
434 PLN02817 glutathione dehydroge 92.5 0.4 8.7E-06 43.6 6.8 56 28-84 72-127 (265)
435 cd03018 PRX_AhpE_like Peroxire 92.5 0.46 9.9E-06 38.6 6.6 62 129-195 22-90 (149)
436 cd00340 GSH_Peroxidase Glutath 92.3 0.31 6.7E-06 40.1 5.5 55 136-195 22-91 (152)
437 PLN02412 probable glutathione 92.3 0.38 8.3E-06 40.4 6.0 56 137-196 30-100 (167)
438 COG5494 Predicted thioredoxin/ 92.1 0.36 7.8E-06 41.6 5.6 60 135-203 10-71 (265)
439 PF07449 HyaE: Hydrogenase-1 e 92.1 0.28 6E-06 38.0 4.5 80 6-89 18-104 (107)
440 cd02969 PRX_like1 Peroxiredoxi 92.0 0.58 1.3E-05 39.2 6.9 60 8-73 20-94 (171)
441 PF00578 AhpC-TSA: AhpC/TSA fa 92.0 0.45 9.8E-06 37.1 5.9 59 12-75 24-89 (124)
442 cd02972 DsbA_family DsbA famil 92.0 0.27 5.9E-06 36.1 4.3 13 187-199 79-91 (98)
443 COG0625 Gst Glutathione S-tran 91.9 0.61 1.3E-05 40.4 7.1 65 256-320 6-72 (211)
444 KOG1672 ATP binding protein [P 91.8 0.28 6E-06 41.9 4.5 77 4-86 75-159 (211)
445 cd03018 PRX_AhpE_like Peroxire 91.8 0.52 1.1E-05 38.2 6.2 46 26-73 38-90 (149)
446 KOG2501 Thioredoxin, nucleored 91.8 0.47 1E-05 39.3 5.7 63 137-202 34-129 (157)
447 TIGR02540 gpx7 putative glutat 91.8 0.44 9.5E-06 39.2 5.8 49 147-196 30-93 (153)
448 PLN02399 phospholipid hydroper 91.7 0.44 9.5E-06 42.5 6.0 55 137-195 100-169 (236)
449 PLN02395 glutathione S-transfe 91.6 0.92 2E-05 39.3 7.9 70 246-321 3-74 (215)
450 PRK10357 putative glutathione 91.5 0.62 1.3E-05 40.0 6.7 62 256-318 6-68 (202)
451 PRK15113 glutathione S-transfe 91.2 1 2.2E-05 39.2 7.7 64 15-81 5-70 (214)
452 cd02991 UAS_ETEA UAS family, E 90.9 1.5 3.2E-05 34.5 7.6 92 4-102 7-112 (116)
453 PF03190 Thioredox_DsbH: Prote 90.7 0.4 8.7E-06 40.1 4.4 74 126-202 27-116 (163)
454 cd03078 GST_N_Metaxin1_like GS 90.6 0.95 2.1E-05 32.4 5.8 56 259-322 16-71 (73)
455 PF02798 GST_N: Glutathione S- 90.6 2.5 5.5E-05 30.2 8.1 60 260-319 10-73 (76)
456 PF06764 DUF1223: Protein of u 90.4 0.37 8.1E-06 41.8 4.1 64 246-314 2-86 (202)
457 KOG1422 Intracellular Cl- chan 90.2 1.1 2.4E-05 38.8 6.7 61 258-321 20-82 (221)
458 cd03075 GST_N_Mu GST_N family, 90.1 2.6 5.6E-05 30.7 8.0 62 259-320 9-78 (82)
459 cd03016 PRX_1cys Peroxiredoxin 89.7 1.1 2.5E-05 38.8 6.7 42 14-58 26-74 (203)
460 PF06953 ArsD: Arsenical resis 89.7 1.4 3.1E-05 35.0 6.6 62 34-102 31-101 (123)
461 KOG0914 Thioredoxin-like prote 89.5 0.36 7.8E-06 41.9 3.3 76 6-84 134-222 (265)
462 cd02974 AhpF_NTD_N Alkyl hydro 89.2 0.6 1.3E-05 35.3 4.0 34 3-42 10-43 (94)
463 cd02971 PRX_family Peroxiredox 89.2 0.99 2.2E-05 36.0 5.6 57 13-73 22-85 (140)
464 KOG0913 Thiol-disulfide isomer 89.1 0.083 1.8E-06 46.3 -0.9 74 120-202 25-107 (248)
465 KOG1731 FAD-dependent sulfhydr 89.0 0.49 1.1E-05 46.8 4.2 73 5-84 47-140 (606)
466 cd03014 PRX_Atyp2cys Peroxired 88.9 1.2 2.7E-05 35.8 6.0 61 129-195 21-87 (143)
467 cd03077 GST_N_Alpha GST_N fami 88.8 3.1 6.7E-05 30.0 7.5 58 28-86 9-68 (79)
468 KOG0868 Glutathione S-transfer 88.7 0.44 9.5E-06 40.1 3.1 64 136-202 4-68 (217)
469 PRK13972 GSH-dependent disulfi 88.7 2.5 5.5E-05 36.6 8.3 54 246-305 2-57 (215)
470 PF07315 DUF1462: Protein of u 88.7 2.4 5.2E-05 31.5 6.6 47 273-319 37-88 (93)
471 PF00578 AhpC-TSA: AhpC/TSA fa 88.3 0.88 1.9E-05 35.4 4.6 62 129-196 20-88 (124)
472 PF06953 ArsD: Arsenical resis 88.2 1.4 2.9E-05 35.1 5.5 46 156-202 31-83 (123)
473 PF01216 Calsequestrin: Calseq 87.6 1.3 2.9E-05 41.3 5.8 259 5-303 42-333 (383)
474 PF07315 DUF1462: Protein of u 87.6 3.6 7.7E-05 30.6 6.9 55 149-203 7-79 (93)
475 KOG0868 Glutathione S-transfer 87.4 1.9 4.1E-05 36.4 6.1 58 262-319 17-77 (217)
476 TIGR01262 maiA maleylacetoacet 87.3 1.3 2.8E-05 38.2 5.4 57 28-84 7-66 (210)
477 cd03017 PRX_BCP Peroxiredoxin 86.9 2.1 4.5E-05 34.1 6.1 55 14-73 24-85 (140)
478 KOG4244 Failed axon connection 86.9 2.5 5.5E-05 37.9 6.9 70 130-209 38-111 (281)
479 PTZ00057 glutathione s-transfe 86.8 4.8 0.0001 34.7 8.8 70 245-319 4-78 (205)
480 KOG3414 Component of the U4/U6 86.8 4.3 9.3E-05 32.3 7.3 72 4-80 11-90 (142)
481 cd02968 SCO SCO (an acronym fo 86.6 2.3 5E-05 33.9 6.3 61 128-195 16-91 (142)
482 PRK13599 putative peroxiredoxi 86.6 2.1 4.5E-05 37.6 6.3 41 14-57 29-76 (215)
483 cd03017 PRX_BCP Peroxiredoxin 86.5 2.5 5.4E-05 33.7 6.4 56 135-195 23-85 (140)
484 PRK11752 putative S-transferas 86.4 3.7 7.9E-05 37.2 8.1 75 240-320 39-125 (264)
485 cd03014 PRX_Atyp2cys Peroxired 85.9 2 4.3E-05 34.6 5.5 54 14-72 27-86 (143)
486 cd03078 GST_N_Metaxin1_like GS 85.7 3.4 7.4E-05 29.5 6.0 55 27-89 14-68 (73)
487 KOG3171 Conserved phosducin-li 85.5 2.1 4.6E-05 37.1 5.6 78 28-108 170-256 (273)
488 COG5494 Predicted thioredoxin/ 85.4 1.8 3.9E-05 37.4 5.0 69 243-320 10-84 (265)
489 PLN02473 glutathione S-transfe 85.3 3.2 6.9E-05 35.9 6.9 57 28-84 10-68 (214)
490 PF02114 Phosducin: Phosducin; 84.9 1.2 2.5E-05 40.5 4.0 76 149-229 156-242 (265)
491 KOG1422 Intracellular Cl- chan 84.9 2.4 5.3E-05 36.7 5.6 54 28-84 20-75 (221)
492 cd02971 PRX_family Peroxiredox 84.8 2.8 6.1E-05 33.3 5.9 58 134-195 21-85 (140)
493 PRK13190 putative peroxiredoxi 84.8 2.3 5.1E-05 36.8 5.7 60 12-74 26-96 (202)
494 PRK09437 bcp thioredoxin-depen 84.6 3.3 7.1E-05 33.8 6.3 62 7-74 25-93 (154)
495 PRK00522 tpx lipid hydroperoxi 84.5 2.5 5.4E-05 35.3 5.7 57 13-73 43-105 (167)
496 KOG1695 Glutathione S-transfer 84.5 5.1 0.00011 34.9 7.6 62 258-320 11-72 (206)
497 PRK10606 btuE putative glutath 84.3 2.4 5.3E-05 36.2 5.5 54 15-74 26-94 (183)
498 KOG1672 ATP binding protein [P 84.0 2.1 4.5E-05 36.7 4.8 91 126-225 75-178 (211)
499 PRK10606 btuE putative glutath 84.0 2.8 6.2E-05 35.8 5.8 60 137-201 26-103 (183)
500 cd03016 PRX_1cys Peroxiredoxin 83.3 3.2 7E-05 35.9 6.0 46 129-177 19-71 (203)
No 1
>PTZ00062 glutaredoxin; Provisional
Probab=100.00 E-value=3.1e-35 Score=253.76 Aligned_cols=187 Identities=29% Similarity=0.554 Sum_probs=152.6
Q ss_pred HHHHHHHhcCC-CEEEEEecCCCCCCCcchHHHHHHhhc-----CCCCeEEEecCCCHHHHHHHHhhcCCCCccee--ee
Q 020081 126 TSRLESLINSS-PVMLFMKGKPEEPKCGFSGKVVEILKQ-----GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL--YI 197 (331)
Q Consensus 126 ~~~~~~~~~~~-~vvvf~~~~~~~~~C~~C~~~~~~l~~-----~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i--fi 197 (331)
.+.+.+++++. ..+|+.+ |++||+.|+.+.+.|.+ ..+.|..+|.+ +++..+|++ |-
T Consensus 6 ~ee~~~~i~~~~g~~vl~f---~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d------------~~V~~vPtfv~~~ 70 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYV---KSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA------------DANNEYGVFEFYQ 70 (204)
T ss_pred HHHHHHHHhcCCCcEEEEE---eCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc------------cCcccceEEEEEE
Confidence 45577777633 4455555 35799999999888876 35677777754 499999999 56
Q ss_pred cCccccchhhHHHHhhcchhHHHHhhhccchhhhhHHHHHHHHhhcCCEEEEecCCCCCCCCcchHHHHHHHhhcCCccE
Q 020081 198 KGELIGGSDIVLEMQKSGELKKVLAEKGITVEKENLEDRLKNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFG 277 (331)
Q Consensus 198 ~G~~vgg~d~~~~~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~ 277 (331)
||+.++.+.... -.+|...+...-.....+.+.+++++++++++|+||+||+|..|+||||++++++|++++++|+
T Consensus 71 ~g~~i~r~~G~~----~~~~~~~~~~~~~~~~~~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~ 146 (204)
T PTZ00062 71 NSQLINSLEGCN----TSTLVSFIRGWAQKGSSEDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYE 146 (204)
T ss_pred CCEEEeeeeCCC----HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEE
Confidence 888886544222 2244444444322224456899999999999999999999999999999999999999999999
Q ss_pred EEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHHHcCCchhhhcC
Q 020081 278 SFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKDNGELKSTLSE 331 (331)
Q Consensus 278 ~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~~~g~L~~~l~~ 331 (331)
++||..+++.+++|++++|++|||||||||++|||+|++++|+++|+|.++|.+
T Consensus 147 ~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 147 TYNIFEDPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKELYESNSLRKVIPD 200 (204)
T ss_pred EEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHHHcCChhhhhhh
Confidence 999999999999999999999999999999999999999999999999998863
No 2
>PTZ00062 glutaredoxin; Provisional
Probab=100.00 E-value=1.7e-34 Score=249.11 Aligned_cols=189 Identities=32% Similarity=0.595 Sum_probs=163.1
Q ss_pred HHHHHHHHhhC--CCEEEEEecCCCCCCChhHHHHHHHHHhC-----CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEE
Q 020081 3 LKSRLQQLLDS--HPVMLFMKGTPEEPKCGFSRQVVDILKDE-----KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYC 75 (331)
Q Consensus 3 ~~~~~~~~i~~--~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi 75 (331)
..+.+.+++++ ..+|+|. |++|||+|+.+.++|.++ .+.|..||.+ +. ++++||| .+|.
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f----~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~-V~~vPtf-v~~~ 70 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYV----KSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DA-NNEYGVF-EFYQ 70 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEE----eCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cC-cccceEE-EEEE
Confidence 35788888884 4455554 467999999999999986 5778888765 55 9999999 9999
Q ss_pred CCEEeechhhHHhhhcccchHHHHHhcCcccccCCCCCCCCCCcccchhHHHHHHHHhcCCCEEEEEecCCCCCCCcchH
Q 020081 76 KGELLGGCDIVIAMHKSGELKDVFRDHGIETVGGSGKSGISESTGLSATLTSRLESLINSSPVMLFMKGKPEEPKCGFSG 155 (331)
Q Consensus 76 ~g~~vgg~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~ 155 (331)
+|+.|+.+.+... .+|...++.+. ++++ .+...+++++++++++|+||++++|+.|+||||+
T Consensus 71 ~g~~i~r~~G~~~----~~~~~~~~~~~-------~~~~-------~~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~ 132 (204)
T PTZ00062 71 NSQLINSLEGCNT----STLVSFIRGWA-------QKGS-------SEDTVEKIERLIRNHKILLFMKGSKTFPFCRFSN 132 (204)
T ss_pred CCEEEeeeeCCCH----HHHHHHHHHHc-------CCCC-------HHHHHHHHHHHHhcCCEEEEEccCCCCCCChhHH
Confidence 9999998876543 67888887772 1111 2358899999999999999999999999999999
Q ss_pred HHHHHhhcCCCCeEEEecCCCHHHHHHHHhhcCCCCcceeeecCccccchhhHHHHhhcchhHHHHhh
Q 020081 156 KVVEILKQGKVDFGSFDILTDEEVRQGLKVYSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKKVLAE 223 (331)
Q Consensus 156 ~~~~~l~~~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~ifi~G~~vgg~d~~~~~~~~g~L~~~l~~ 223 (331)
+++.+|++.+++|.++|+++++++++.+++++|++++|+|||||+++||+|++.++++.|+|.++|.+
T Consensus 133 ~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 133 AVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKELYESNSLRKVIPD 200 (204)
T ss_pred HHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHHHcCChhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998874
No 3
>PRK10824 glutaredoxin-4; Provisional
Probab=99.96 E-value=1.3e-29 Score=198.65 Aligned_cols=100 Identities=45% Similarity=0.931 Sum_probs=96.5
Q ss_pred hHHHHHHHHhhcCCEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEe
Q 020081 232 NLEDRLKNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIG 311 (331)
Q Consensus 232 ~~~~~~~~~~~~~~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~ig 311 (331)
.+.+++++++++++|+||+||||..|+||||.+|+++|++++++|..+||..+++.+++|.+++|++|||||||||+|||
T Consensus 3 ~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IG 82 (115)
T PRK10824 3 TTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVG 82 (115)
T ss_pred hHHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eHHHHHHHHHcCCchhhhcC
Q 020081 312 GCDIVMELKDNGELKSTLSE 331 (331)
Q Consensus 312 g~~~~~~~~~~g~L~~~l~~ 331 (331)
|+|++.+|+++|+|.++|++
T Consensus 83 G~ddl~~l~~~G~L~~lL~~ 102 (115)
T PRK10824 83 GCDIVIEMYQRGELQQLIKE 102 (115)
T ss_pred ChHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999863
No 4
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.95 E-value=1.2e-27 Score=183.79 Aligned_cols=95 Identities=55% Similarity=1.070 Sum_probs=92.2
Q ss_pred HHHHHHhhcCCEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHH
Q 020081 235 DRLKNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCD 314 (331)
Q Consensus 235 ~~~~~~~~~~~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~ 314 (331)
+++++++++++|+||++|+++.|+||||.+|+++|+++|++|+++||..+++.+++|++++|+++||+|||||++|||+|
T Consensus 3 ~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~d 82 (97)
T TIGR00365 3 ERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCD 82 (97)
T ss_pred HHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCchhhh
Q 020081 315 IVMELKDNGELKSTL 329 (331)
Q Consensus 315 ~~~~~~~~g~L~~~l 329 (331)
+|++++++|+|.++|
T Consensus 83 dl~~l~~~g~L~~~l 97 (97)
T TIGR00365 83 IIMEMYQSGELQTLL 97 (97)
T ss_pred HHHHHHHCcChHHhC
Confidence 999999999999876
No 5
>PRK10824 glutaredoxin-4; Provisional
Probab=99.95 E-value=1.3e-27 Score=187.25 Aligned_cols=104 Identities=41% Similarity=0.857 Sum_probs=100.6
Q ss_pred ChHHHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEe
Q 020081 1 MLLKSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELL 80 (331)
Q Consensus 1 ~~~~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~v 80 (331)
|.+++.++++|++++||||++++|..||||||++++.+|++++++|..+|++.++++++.+.+++|+|||||||+||++|
T Consensus 2 ~~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~I 81 (115)
T PRK10824 2 STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELV 81 (115)
T ss_pred chHHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEE
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echhhHHhhhcccchHHHHHhcCc
Q 020081 81 GGCDIVIAMHKSGELKDVFRDHGI 104 (331)
Q Consensus 81 gg~~~~~~~~~~~~l~~~l~~~~~ 104 (331)
||++++.+++++|+|.++|+..++
T Consensus 82 GG~ddl~~l~~~G~L~~lL~~~~~ 105 (115)
T PRK10824 82 GGCDIVIEMYQRGELQQLIKETAA 105 (115)
T ss_pred cChHHHHHHHHCCCHHHHHHHHHh
Confidence 999999999999999999999876
No 6
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.3e-27 Score=174.09 Aligned_cols=100 Identities=55% Similarity=1.046 Sum_probs=97.0
Q ss_pred hHHHHHHHHhhcCCEEEEecCCCCCCCCcchHHHHHHHhhcC-CccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEE
Q 020081 232 NLEDRLKNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEG-VNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELI 310 (331)
Q Consensus 232 ~~~~~~~~~~~~~~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~-v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~i 310 (331)
.+.+++++.++.++|++|+||||+.|.|+|..++.++|...| ++|..+||..++++|+.|+++++|+|+||+||||++|
T Consensus 3 ~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfv 82 (105)
T COG0278 3 EILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFV 82 (105)
T ss_pred hHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEe
Confidence 467899999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred eeHHHHHHHHHcCCchhhhcC
Q 020081 311 GGCDIVMELKDNGELKSTLSE 331 (331)
Q Consensus 311 gg~~~~~~~~~~g~L~~~l~~ 331 (331)
||+|.+.+|+++|+|..+|++
T Consensus 83 GG~DIv~Em~q~GELq~~l~~ 103 (105)
T COG0278 83 GGCDIVREMYQSGELQTLLKE 103 (105)
T ss_pred ccHHHHHHHHHcchHHHHHHh
Confidence 999999999999999999875
No 7
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1e-26 Score=197.76 Aligned_cols=193 Identities=36% Similarity=0.561 Sum_probs=153.4
Q ss_pred CCCCCChhHHHHHHHHHhC-----CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechhhHHhhhcccchHHH
Q 020081 24 PEEPKCGFSRQVVDILKDE-----KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIAMHKSGELKDV 98 (331)
Q Consensus 24 ~~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~~~~~~~~l~~~ 98 (331)
+|++||..|+.+..++... ++.|...+.+..+++.+.+. +.+.|.+ ..|.+|+.+....+... -.+...
T Consensus 24 f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~-v~~vp~~-~~~~~~~~v~~l~~~~~----~~~~~~ 97 (227)
T KOG0911|consen 24 FWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIA-VEAVPYF-VFFFLGEKVDRLSGADP----PFLVSK 97 (227)
T ss_pred hhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHH-HhcCcee-eeeecchhhhhhhccCc----HHHHHH
Confidence 4788999999999988885 57788888888999999888 9999999 77778888765554333 233333
Q ss_pred HHhcCcccccCCCCCCCC---C--CcccchhHHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhcCCCCeEEEec
Q 020081 99 FRDHGIETVGGSGKSGIS---E--STGLSATLTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQGKVDFGSFDI 173 (331)
Q Consensus 99 l~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~~di 173 (331)
+.........++..+..+ + .+.... ..++++.+++.++|++|+|++|.+|.|++++++..+|++++++|..+||
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdI 176 (227)
T KOG0911|consen 98 VEKLAESGSASLGMGLSTTIRETQTTNETD-LDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDV 176 (227)
T ss_pred HHHhhhhcccccCCCCCcchhcccccchhh-HHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEec
Confidence 333311111000000000 0 011112 5669999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhcCCCCcceeeecCccccchhhHHHHhhcchhHHHHhh
Q 020081 174 LTDEEVRQGLKVYSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKKVLAE 223 (331)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~vP~ifi~G~~vgg~d~~~~~~~~g~L~~~l~~ 223 (331)
..|+++|+.++++|.|+|+||+||||+++||+|.+..+++.|+|...|++
T Consensus 177 L~DeelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~~~geL~~~l~~ 226 (227)
T KOG0911|consen 177 LTDEELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMHEKGELVYTLKE 226 (227)
T ss_pred cCCHHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHhhcccHHHHhhc
Confidence 99999999999999999999999999999999999999999999998864
No 8
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.94 E-value=2.5e-26 Score=174.31 Aligned_cols=90 Identities=69% Similarity=1.273 Sum_probs=86.7
Q ss_pred HHHHhhcCCEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHH
Q 020081 237 LKNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIV 316 (331)
Q Consensus 237 ~~~~~~~~~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~ 316 (331)
+++++++++|+||++|+|++|+||||.+|+++|+++|++|+++||..+++.+++|.+.+|++++|+|||||++|||++++
T Consensus 1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l 80 (90)
T cd03028 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIV 80 (90)
T ss_pred ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHH
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCch
Q 020081 317 MELKDNGELK 326 (331)
Q Consensus 317 ~~~~~~g~L~ 326 (331)
++++++|+|+
T Consensus 81 ~~l~~~g~L~ 90 (90)
T cd03028 81 KEMHESGELQ 90 (90)
T ss_pred HHHHHcCCcC
Confidence 9999999985
No 9
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.1e-26 Score=193.51 Aligned_cols=190 Identities=34% Similarity=0.585 Sum_probs=141.0
Q ss_pred CCCEEEEEecCCCCCCCcchHHHHHHhhcC-----CCCeEEEecCCCHHHHHHHHhhcCCCCccee--eecCccccchhh
Q 020081 135 SSPVMLFMKGKPEEPKCGFSGKVVEILKQG-----KVDFGSFDILTDEEVRQGLKVYSNWSSYPQL--YIKGELIGGSDI 207 (331)
Q Consensus 135 ~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i--fi~G~~vgg~d~ 207 (331)
..+.++..+ |++||..|+++...+... +..|...+.+..+++.+.+ -+..+|.+ +.+|+-+.-...
T Consensus 16 ~~~~~~~~f---~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~----~v~~vp~~~~~~~~~~v~~l~~ 88 (227)
T KOG0911|consen 16 KGKLLVLHF---WAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLI----AVEAVPYFVFFFLGEKVDRLSG 88 (227)
T ss_pred ccchhhhhh---hhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHH----HHhcCceeeeeecchhhhhhhc
Confidence 334444444 668999999888888652 4456666666666666444 67888888 335655532221
Q ss_pred HHHHhhcchhHHHHhhhc--c-chhhh-----------hHHHHHHHHhhcCCEEEEecCCCCCCCCcchHHHHHHHhhcC
Q 020081 208 VLEMQKSGELKKVLAEKG--I-TVEKE-----------NLEDRLKNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEG 273 (331)
Q Consensus 208 ~~~~~~~g~L~~~l~~~~--~-~~~~~-----------~~~~~~~~~~~~~~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~ 273 (331)
.....-...+..+..... . ..... .+.+++..+++.++|++|+||+|+.|.|++.+.+..+|++++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~n 168 (227)
T KOG0911|consen 89 ADPPFLVSKVEKLAESGSASLGMGLSTTIRETQTTNETDLDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHN 168 (227)
T ss_pred cCcHHHHHHHHHhhhhcccccCCCCCcchhcccccchhhHHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcC
Confidence 111111111222111110 0 00112 245589999999999999999999999999999999999999
Q ss_pred CccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHHHcCCchhhhcC
Q 020081 274 VNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKDNGELKSTLSE 331 (331)
Q Consensus 274 v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~~~g~L~~~l~~ 331 (331)
++|..+||..|.++|+.+++++.|+|+||+||+|+++||+|.+.+|+++|+|...|++
T Consensus 169 V~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~~~geL~~~l~~ 226 (227)
T KOG0911|consen 169 VNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMHEKGELVYTLKE 226 (227)
T ss_pred CCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHhhcccHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999998875
No 10
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.1e-24 Score=161.22 Aligned_cols=101 Identities=53% Similarity=0.985 Sum_probs=97.3
Q ss_pred hHHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhcCC-CCeEEEecCCCHHHHHHHHhhcCCCCcceeeecCccc
Q 020081 124 TLTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQGK-VDFGSFDILTDEEVRQGLKVYSNWSSYPQLYIKGELI 202 (331)
Q Consensus 124 ~~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~~-i~~~~~di~~~~~~~~~l~~~~~~~~vP~ifi~G~~v 202 (331)
++.+++++.+++++|+||+|++|..|.|+++.++.++|...+ ++|..+|+..|+++|+.|+++++|+|+||+||||++|
T Consensus 3 ~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfv 82 (105)
T COG0278 3 EILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFV 82 (105)
T ss_pred hHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEe
Confidence 467889999999999999999999999999999999999999 7999999999999999999999999999999999999
Q ss_pred cchhhHHHHhhcchhHHHHhhh
Q 020081 203 GGSDIVLEMQKSGELKKVLAEK 224 (331)
Q Consensus 203 gg~d~~~~~~~~g~L~~~l~~~ 224 (331)
||+|.+.++++.|+|+.+|+..
T Consensus 83 GG~DIv~Em~q~GELq~~l~~~ 104 (105)
T COG0278 83 GGCDIVREMYQSGELQTLLKEA 104 (105)
T ss_pred ccHHHHHHHHHcchHHHHHHhc
Confidence 9999999999999999999754
No 11
>PHA03050 glutaredoxin; Provisional
Probab=99.92 E-value=1.8e-24 Score=169.02 Aligned_cols=93 Identities=22% Similarity=0.407 Sum_probs=87.1
Q ss_pred HHHHHHHhhcCCEEEEecCCCCCCCCcchHHHHHHHhhcCC---ccEEEEecC---CHHHHHHHHhhcCCCCcCEEEECC
Q 020081 234 EDRLKNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEGV---NFGSFDILT---DEEVRQGLKVYSNWPTFPQLYHKG 307 (331)
Q Consensus 234 ~~~~~~~~~~~~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v---~~~~~dv~~---~~~~~~~l~~~~g~~~vP~ifi~g 307 (331)
.+++++++++++|+||++ +|||||.+|+++|+++++ +|+.+||+. +.+.+++|.+.+|+++||+|||||
T Consensus 3 ~~~v~~~i~~~~V~vys~-----~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g 77 (108)
T PHA03050 3 EEFVQQRLANNKVTIFVK-----FTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGK 77 (108)
T ss_pred HHHHHHHhccCCEEEEEC-----CCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECC
Confidence 467889999999999995 599999999999999999 899999986 678999999999999999999999
Q ss_pred eEEeeHHHHHHHHHcCCchhhhcC
Q 020081 308 ELIGGCDIVMELKDNGELKSTLSE 331 (331)
Q Consensus 308 ~~igg~~~~~~~~~~g~L~~~l~~ 331 (331)
++|||+|+|++|+++|+|.++|++
T Consensus 78 ~~iGG~ddl~~l~~~g~L~~~l~~ 101 (108)
T PHA03050 78 TSIGGYSDLLEIDNMDALGDILSS 101 (108)
T ss_pred EEEeChHHHHHHHHcCCHHHHHHH
Confidence 999999999999999999999863
No 12
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.91 E-value=2.1e-24 Score=165.76 Aligned_cols=96 Identities=51% Similarity=1.022 Sum_probs=91.7
Q ss_pred HHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeech
Q 020081 4 KSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGC 83 (331)
Q Consensus 4 ~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~ 83 (331)
.+.+++++++++||||+++++..||||||.+++.+|++++++|.++|+++++++++++.+++|.+|+|+||+||++|||+
T Consensus 2 ~~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ 81 (97)
T TIGR00365 2 IERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGC 81 (97)
T ss_pred hHHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCh
Confidence 47889999999999999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhcccchHHHH
Q 020081 84 DIVIAMHKSGELKDVF 99 (331)
Q Consensus 84 ~~~~~~~~~~~l~~~l 99 (331)
+++.+++++|+|.++|
T Consensus 82 ddl~~l~~~g~L~~~l 97 (97)
T TIGR00365 82 DIIMEMYQSGELQTLL 97 (97)
T ss_pred HHHHHHHHCcChHHhC
Confidence 9999999999999875
No 13
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.91 E-value=1.9e-24 Score=166.67 Aligned_cols=89 Identities=25% Similarity=0.462 Sum_probs=81.5
Q ss_pred HHHhhcCCEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHH---HHHHHHhhcCCCCcCEEEECCeEEeeHH
Q 020081 238 KNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEE---VRQGLKVYSNWPTFPQLYHKGELIGGCD 314 (331)
Q Consensus 238 ~~~~~~~~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~---~~~~l~~~~g~~~vP~ifi~g~~igg~~ 314 (331)
++++++++|+||++ ++||||.+|+++|++++++|+++||+.+++ .++++.+++|++++|+|||||++|||+|
T Consensus 2 ~~~i~~~~Vvvysk-----~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~d 76 (99)
T TIGR02189 2 RRMVSEKAVVIFSR-----SSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLE 76 (99)
T ss_pred hhhhccCCEEEEEC-----CCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHH
Confidence 56788999999995 699999999999999999999999987644 5667888899999999999999999999
Q ss_pred HHHHHHHcCCchhhhcC
Q 020081 315 IVMELKDNGELKSTLSE 331 (331)
Q Consensus 315 ~~~~~~~~g~L~~~l~~ 331 (331)
++++++++|+|.++|++
T Consensus 77 dl~~l~~~G~L~~~l~~ 93 (99)
T TIGR02189 77 NVMALHISGSLVPMLKQ 93 (99)
T ss_pred HHHHHHHcCCHHHHHHH
Confidence 99999999999999863
No 14
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.89 E-value=4.9e-23 Score=156.24 Aligned_cols=90 Identities=67% Similarity=1.275 Sum_probs=86.3
Q ss_pred HHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechhhH
Q 020081 7 LQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIV 86 (331)
Q Consensus 7 ~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~ 86 (331)
++++|++++||||++++|..||||+|++++.+|++++++|..+|++.++++++++.+.+|.+|+|+||+||++|||++++
T Consensus 1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l 80 (90)
T cd03028 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIV 80 (90)
T ss_pred ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccchH
Q 020081 87 IAMHKSGELK 96 (331)
Q Consensus 87 ~~~~~~~~l~ 96 (331)
.+++++|+|+
T Consensus 81 ~~l~~~g~L~ 90 (90)
T cd03028 81 KEMHESGELQ 90 (90)
T ss_pred HHHHHcCCcC
Confidence 9999999884
No 15
>PHA03050 glutaredoxin; Provisional
Probab=99.89 E-value=1.2e-22 Score=158.69 Aligned_cols=96 Identities=24% Similarity=0.467 Sum_probs=90.9
Q ss_pred HHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhCCC---CeEEEEecC---CHHHHHHHhhhhCCCcccEEEECC
Q 020081 4 KSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDEKV---EFGSFNILS---DNEVREGLKKFSNWPTFPQLYCKG 77 (331)
Q Consensus 4 ~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i---~~~~vdi~~---~~~~~~~~~~~~~~~t~P~ifi~g 77 (331)
++.++++|++++|+||+++ |||||++++.+|+++++ +|..+|++. +.++++++.+++|..|+|+||+||
T Consensus 3 ~~~v~~~i~~~~V~vys~~-----~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g 77 (108)
T PHA03050 3 EEFVQQRLANNKVTIFVKF-----TCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGK 77 (108)
T ss_pred HHHHHHHhccCCEEEEECC-----CChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECC
Confidence 6789999999999999987 99999999999999999 799999986 578999999999999999999999
Q ss_pred EEeechhhHHhhhcccchHHHHHhcCc
Q 020081 78 ELLGGCDIVIAMHKSGELKDVFRDHGI 104 (331)
Q Consensus 78 ~~vgg~~~~~~~~~~~~l~~~l~~~~~ 104 (331)
++|||++++.++++.|+|.++|+++|+
T Consensus 78 ~~iGG~ddl~~l~~~g~L~~~l~~~~~ 104 (108)
T PHA03050 78 TSIGGYSDLLEIDNMDALGDILSSIGV 104 (108)
T ss_pred EEEeChHHHHHHHHcCCHHHHHHHccc
Confidence 999999999999999999999999975
No 16
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.89 E-value=6.8e-23 Score=157.99 Aligned_cols=92 Identities=23% Similarity=0.488 Sum_probs=85.1
Q ss_pred HHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHH---HHHHHhhhhCCCcccEEEECCEEeechh
Q 020081 8 QQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNE---VREGLKKFSNWPTFPQLYCKGELLGGCD 84 (331)
Q Consensus 8 ~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~---~~~~~~~~~~~~t~P~ifi~g~~vgg~~ 84 (331)
+++|++++|+||+++ |||||++++.+|++++++|..+|++.+++ +++.+.+.+|.+|+|+||++|++|||++
T Consensus 2 ~~~i~~~~Vvvysk~-----~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~d 76 (99)
T TIGR02189 2 RRMVSEKAVVIFSRS-----SCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLE 76 (99)
T ss_pred hhhhccCCEEEEECC-----CCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHH
Confidence 678999999999986 99999999999999999999999987744 5667877889999999999999999999
Q ss_pred hHHhhhcccchHHHHHhcCc
Q 020081 85 IVIAMHKSGELKDVFRDHGI 104 (331)
Q Consensus 85 ~~~~~~~~~~l~~~l~~~~~ 104 (331)
++.+++++|+|.++|++.|+
T Consensus 77 dl~~l~~~G~L~~~l~~~~~ 96 (99)
T TIGR02189 77 NVMALHISGSLVPMLKQAGA 96 (99)
T ss_pred HHHHHHHcCCHHHHHHHhCc
Confidence 99999999999999999875
No 17
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.1e-22 Score=153.79 Aligned_cols=98 Identities=27% Similarity=0.598 Sum_probs=91.7
Q ss_pred hHHHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCC---HHHHHHHhhhhCCCcccEEEECCE
Q 020081 2 LLKSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSD---NEVREGLKKFSNWPTFPQLYCKGE 78 (331)
Q Consensus 2 ~~~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~---~~~~~~~~~~~~~~t~P~ifi~g~ 78 (331)
...+++++++++++||||+++ |||||.+++.+|...++.+..+++|.+ .++++++.+++|.+|+|.||++|+
T Consensus 2 ~~~~~v~~~i~~~~VVifSKs-----~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk 76 (104)
T KOG1752|consen 2 AAEAKVRKMISENPVVIFSKS-----SCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGK 76 (104)
T ss_pred cHHHHHHHHhhcCCEEEEECC-----cCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCE
Confidence 456789999999999999998 999999999999999999998888766 689999999999999999999999
Q ss_pred EeechhhHHhhhcccchHHHHHhcCc
Q 020081 79 LLGGCDIVIAMHKSGELKDVFRDHGI 104 (331)
Q Consensus 79 ~vgg~~~~~~~~~~~~l~~~l~~~~~ 104 (331)
+|||.++++++|.+|+|.++|+..++
T Consensus 77 ~iGG~~dl~~lh~~G~L~~~l~~~~~ 102 (104)
T KOG1752|consen 77 FIGGASDLMALHKSGELVPLLKEAGA 102 (104)
T ss_pred EEcCHHHHHHHHHcCCHHHHHHHhhc
Confidence 99999999999999999999998864
No 18
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=8e-22 Score=151.53 Aligned_cols=94 Identities=30% Similarity=0.575 Sum_probs=86.8
Q ss_pred HHHHHHHHhhcCCEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCC---HHHHHHHHhhcCCCCcCEEEECCeE
Q 020081 233 LEDRLKNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTD---EEVRQGLKVYSNWPTFPQLYHKGEL 309 (331)
Q Consensus 233 ~~~~~~~~~~~~~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~---~~~~~~l~~~~g~~~vP~ifi~g~~ 309 (331)
..+.++.++..++|+||+|+ +||||++++++|...++.+..++++.+ .+++++|.+.+|+++||+|||||++
T Consensus 3 ~~~~v~~~i~~~~VVifSKs-----~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~ 77 (104)
T KOG1752|consen 3 AEAKVRKMISENPVVIFSKS-----SCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKF 77 (104)
T ss_pred HHHHHHHHhhcCCEEEEECC-----cCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEE
Confidence 34578899999999999986 999999999999999999999998753 6888999999999999999999999
Q ss_pred EeeHHHHHHHHHcCCchhhhcC
Q 020081 310 IGGCDIVMELKDNGELKSTLSE 331 (331)
Q Consensus 310 igg~~~~~~~~~~g~L~~~l~~ 331 (331)
|||.+++++++.+|+|.++|++
T Consensus 78 iGG~~dl~~lh~~G~L~~~l~~ 99 (104)
T KOG1752|consen 78 IGGASDLMALHKSGELVPLLKE 99 (104)
T ss_pred EcCHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999873
No 19
>PRK10638 glutaredoxin 3; Provisional
Probab=99.85 E-value=6.5e-21 Score=142.46 Aligned_cols=82 Identities=29% Similarity=0.515 Sum_probs=78.0
Q ss_pred CCEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHHHcC
Q 020081 244 SPVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKDNG 323 (331)
Q Consensus 244 ~~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~~~g 323 (331)
.+|++|++ ++||||++|+++|+++|++|+++||+.+++.++++.+.+|..++|+||+||++|||++++++++++|
T Consensus 2 ~~v~ly~~-----~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g 76 (83)
T PRK10638 2 ANVEIYTK-----ATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARG 76 (83)
T ss_pred CcEEEEEC-----CCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcC
Confidence 47999995 6999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred Cchhhhc
Q 020081 324 ELKSTLS 330 (331)
Q Consensus 324 ~L~~~l~ 330 (331)
+|.++|+
T Consensus 77 ~l~~~~~ 83 (83)
T PRK10638 77 GLDPLLK 83 (83)
T ss_pred CHHHHhC
Confidence 9999885
No 20
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.85 E-value=4.6e-21 Score=141.86 Aligned_cols=79 Identities=27% Similarity=0.535 Sum_probs=75.6
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHHHcCCc
Q 020081 246 VMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKDNGEL 325 (331)
Q Consensus 246 v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~~~g~L 325 (331)
|++|+ .++||+|.+|+++|+++|++|+++||+.+++.++++.+++|+.++|+|||||+++||++++.+++++|+|
T Consensus 1 v~ly~-----~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l 75 (79)
T TIGR02181 1 VTIYT-----KPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKL 75 (79)
T ss_pred CEEEe-----cCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCCh
Confidence 57899 4699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhh
Q 020081 326 KSTL 329 (331)
Q Consensus 326 ~~~l 329 (331)
+.+|
T Consensus 76 ~~~l 79 (79)
T TIGR02181 76 DPLL 79 (79)
T ss_pred hhhC
Confidence 9876
No 21
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.84 E-value=1.5e-20 Score=154.02 Aligned_cols=87 Identities=23% Similarity=0.375 Sum_probs=78.0
Q ss_pred CEEEEecCC-CCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCC----CCcCEEEECCeEEeeHHHHHHH
Q 020081 245 PVMLFMKGN-PDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNW----PTFPQLYHKGELIGGCDIVMEL 319 (331)
Q Consensus 245 ~v~vy~k~~-p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~----~~vP~ifi~g~~igg~~~~~~~ 319 (331)
+|+||+++. -.+.+||+|.+|+++|++++|+|+++||+.+++.+++|++++|. .++|||||||++|||++++++|
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 589999431 11238999999999999999999999999999999999998875 8999999999999999999999
Q ss_pred HHcCCchhhhcC
Q 020081 320 KDNGELKSTLSE 331 (331)
Q Consensus 320 ~~~g~L~~~l~~ 331 (331)
+++|+|.++|++
T Consensus 81 ~e~G~L~~lL~~ 92 (147)
T cd03031 81 NESGELRKLLKG 92 (147)
T ss_pred HHcCCHHHHHhh
Confidence 999999999973
No 22
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.82 E-value=2.7e-19 Score=157.66 Aligned_cols=161 Identities=19% Similarity=0.296 Sum_probs=114.7
Q ss_pred CEEEEEecCCCCCCChhHHHHHHHHHhC-----CCCeEEEEec--CCHHHHHHHhhhhCCCcccEEEECCEEee-chhhH
Q 020081 15 PVMLFMKGTPEEPKCGFSRQVVDILKDE-----KVEFGSFNIL--SDNEVREGLKKFSNWPTFPQLYCKGELLG-GCDIV 86 (331)
Q Consensus 15 ~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~--~~~~~~~~~~~~~~~~t~P~ifi~g~~vg-g~~~~ 86 (331)
.+++|+ ++.++|||+|+.+.++|++. ++.+..++++ +++++...++ +.+.||+ .+|.+|+.++ .+.+.
T Consensus 22 ~i~~f~--~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~-V~~~Pt~-~~f~~g~~~~~~~~G~ 97 (215)
T TIGR02187 22 EIVVFT--DNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYG-VERVPTT-IILEEGKDGGIRYTGI 97 (215)
T ss_pred EEEEEc--CCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcC-CCccCEE-EEEeCCeeeEEEEeec
Confidence 344444 45678999999999999885 3454455554 7899999998 9999999 9999998875 56655
Q ss_pred HhhhcccchHHHHHhcCcccccCCCCCCCCCCcccchhHHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc---
Q 020081 87 IAMHKSGELKDVFRDHGIETVGGSGKSGISESTGLSATLTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ--- 163 (331)
Q Consensus 87 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~--- 163 (331)
.. ..+|.++|+..- .. ++ ....++.+..+.++++-+...|++|+. +||++|+.+.+++++
T Consensus 98 ~~---~~~l~~~i~~~~-~~---~~-----~~~~L~~~~~~~l~~~~~pv~I~~F~a-----~~C~~C~~~~~~l~~l~~ 160 (215)
T TIGR02187 98 PA---GYEFAALIEDIV-RV---SQ-----GEPGLSEKTVELLQSLDEPVRIEVFVT-----PTCPYCPYAVLMAHKFAL 160 (215)
T ss_pred CC---HHHHHHHHHHHH-Hh---cC-----CCCCCCHHHHHHHHhcCCCcEEEEEEC-----CCCCCcHHHHHHHHHHHH
Confidence 44 245666666551 11 01 123445667777887655566666654 699999999988876
Q ss_pred --CCCCeEEEecCCCHHHHHHHHhhcCCCCcceeeecCc
Q 020081 164 --GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQLYIKGE 200 (331)
Q Consensus 164 --~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~ifi~G~ 200 (331)
..+.+..+|++.++++. .++ |+.++|+++++++
T Consensus 161 ~~~~i~~~~vD~~~~~~~~---~~~-~V~~vPtl~i~~~ 195 (215)
T TIGR02187 161 ANDKILGEMIEANENPDLA---EKY-GVMSVPKIVINKG 195 (215)
T ss_pred hcCceEEEEEeCCCCHHHH---HHh-CCccCCEEEEecC
Confidence 25778889998888877 333 9999999987653
No 23
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=8.7e-20 Score=134.91 Aligned_cols=77 Identities=31% Similarity=0.614 Sum_probs=69.2
Q ss_pred CEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCH--HHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHHHc
Q 020081 245 PVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDE--EVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKDN 322 (331)
Q Consensus 245 ~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~--~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~~~ 322 (331)
.|+||++ ++||||++|+++|+++|++|+++++..++ +.++.+.+..|+++||||||||+++||++++.++...
T Consensus 2 ~v~iyt~-----~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~ 76 (80)
T COG0695 2 NVTIYTK-----PGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAK 76 (80)
T ss_pred CEEEEEC-----CCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhh
Confidence 6899995 69999999999999999999999998876 5556666666999999999999999999999999999
Q ss_pred CCch
Q 020081 323 GELK 326 (331)
Q Consensus 323 g~L~ 326 (331)
|.|.
T Consensus 77 ~~l~ 80 (80)
T COG0695 77 GKLD 80 (80)
T ss_pred ccCC
Confidence 8873
No 24
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.80 E-value=2.9e-19 Score=130.70 Aligned_cols=74 Identities=27% Similarity=0.543 Sum_probs=69.8
Q ss_pred CEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCC-CcCEEEECCeEEeeHHHHHHHHHcC
Q 020081 245 PVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWP-TFPQLYHKGELIGGCDIVMELKDNG 323 (331)
Q Consensus 245 ~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~-~vP~ifi~g~~igg~~~~~~~~~~g 323 (331)
+|++|+ .++||+|.+|+++|++++++|+++||+.+++.++++.+++|.. ++|+|||||+++||++++++++++|
T Consensus 1 ~i~ly~-----~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g 75 (75)
T cd03418 1 KVEIYT-----KPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG 75 (75)
T ss_pred CEEEEe-----CCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence 489999 4699999999999999999999999999999999999988887 9999999999999999999999987
No 25
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.79 E-value=4.2e-19 Score=129.29 Aligned_cols=72 Identities=21% Similarity=0.343 Sum_probs=68.3
Q ss_pred CEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHHH
Q 020081 245 PVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKD 321 (331)
Q Consensus 245 ~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~~ 321 (331)
+|++|+ .++||+|++|+++|+++|++|+.+||..++..++++.+++|..++|+||+||++|||+++|.+|++
T Consensus 2 ~v~ly~-----~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~~ 73 (73)
T cd03027 2 RVTIYS-----RLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLEE 73 (73)
T ss_pred EEEEEe-----cCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhcC
Confidence 689999 469999999999999999999999999999999999999999999999999999999999999853
No 26
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.77 E-value=1.6e-18 Score=129.34 Aligned_cols=79 Identities=24% Similarity=0.492 Sum_probs=72.1
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHhhcCCc--cEEEEecCC---HHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHH
Q 020081 246 VMLFMKGNPDSPRCGFSSKVVNALKEEGVN--FGSFDILTD---EEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELK 320 (331)
Q Consensus 246 v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~--~~~~dv~~~---~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~ 320 (331)
|++|+ .+|||+|++++++|++++++ |+.++|+.+ .+.++++.+.+|.+++|+||+||+++||++++.+++
T Consensus 1 V~~f~-----~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~ 75 (84)
T TIGR02180 1 VVVFS-----KSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALY 75 (84)
T ss_pred CEEEE-----CCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHH
Confidence 57899 46999999999999999999 999998753 566778999999999999999999999999999999
Q ss_pred HcCCchhhh
Q 020081 321 DNGELKSTL 329 (331)
Q Consensus 321 ~~g~L~~~l 329 (331)
++|+|..+|
T Consensus 76 ~~g~l~~~~ 84 (84)
T TIGR02180 76 KSGKLAELL 84 (84)
T ss_pred HcCChhhhC
Confidence 999999876
No 27
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.76 E-value=4.4e-18 Score=126.51 Aligned_cols=79 Identities=29% Similarity=0.563 Sum_probs=72.3
Q ss_pred CEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCC---HHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHHH
Q 020081 245 PVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTD---EEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKD 321 (331)
Q Consensus 245 ~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~---~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~~ 321 (331)
+|++|+ .++||+|.+++++|++++++|+.++++.+ .+.++++++.+|..++|+||+||+++||++++.++.+
T Consensus 1 ~v~~y~-----~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~ 75 (82)
T cd03419 1 PVVVFS-----KSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHK 75 (82)
T ss_pred CEEEEE-----cCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHH
Confidence 589999 46999999999999999999999998764 5567889999999999999999999999999999999
Q ss_pred cCCchhh
Q 020081 322 NGELKST 328 (331)
Q Consensus 322 ~g~L~~~ 328 (331)
+|+|.++
T Consensus 76 ~g~l~~~ 82 (82)
T cd03419 76 SGKLVKL 82 (82)
T ss_pred cCCccCC
Confidence 9999764
No 28
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.76 E-value=2.9e-18 Score=129.59 Aligned_cols=85 Identities=24% Similarity=0.374 Sum_probs=73.9
Q ss_pred EEEEecCCCCCCC-CcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCC----CCcCEEEECCeEEeeHHHHHHHH
Q 020081 246 VMLFMKGNPDSPR-CGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNW----PTFPQLYHKGELIGGCDIVMELK 320 (331)
Q Consensus 246 v~vy~k~~p~~~~-Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~----~~vP~ifi~g~~igg~~~~~~~~ 320 (331)
|+||+.+...... =-.|.+++++|++++|+|+++||+.+++.+++|.+++|. +++|||||||+||||||++.+++
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~ 81 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAK 81 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence 6778754222221 235999999999999999999999999999999999864 89999999999999999999999
Q ss_pred HcCCchhhhc
Q 020081 321 DNGELKSTLS 330 (331)
Q Consensus 321 ~~g~L~~~l~ 330 (331)
++|+|.++|+
T Consensus 82 e~g~L~~lLk 91 (92)
T cd03030 82 ENNTLEEFLK 91 (92)
T ss_pred hCCCHHHHhC
Confidence 9999999986
No 29
>PRK10638 glutaredoxin 3; Provisional
Probab=99.76 E-value=5.3e-18 Score=126.66 Aligned_cols=81 Identities=28% Similarity=0.537 Sum_probs=76.7
Q ss_pred CEEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechhhHHhhhcccc
Q 020081 15 PVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIAMHKSGE 94 (331)
Q Consensus 15 ~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~~~~~~~~ 94 (331)
+|++|++. |||+|++++.+|++++++|..+|++.+++.++.+.+.+|..++|+||+||+.|||++++.+++.+|+
T Consensus 3 ~v~ly~~~-----~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g~ 77 (83)
T PRK10638 3 NVEIYTKA-----TCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGG 77 (83)
T ss_pred cEEEEECC-----CChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcCC
Confidence 68999986 9999999999999999999999999998888888889999999999999999999999999999999
Q ss_pred hHHHHH
Q 020081 95 LKDVFR 100 (331)
Q Consensus 95 l~~~l~ 100 (331)
|.+.|+
T Consensus 78 l~~~~~ 83 (83)
T PRK10638 78 LDPLLK 83 (83)
T ss_pred HHHHhC
Confidence 999874
No 30
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.75 E-value=4.8e-18 Score=123.35 Aligned_cols=70 Identities=33% Similarity=0.574 Sum_probs=64.3
Q ss_pred CEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHH
Q 020081 245 PVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELK 320 (331)
Q Consensus 245 ~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~ 320 (331)
+|+||++ ++||+|.+|+++|+++|++|+++|++.++ ..+++++.+|..++|+|||||+++||++++.+++
T Consensus 2 ~v~lys~-----~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~-~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTK-----PGCPFCARAKAALQENGISYEEIPLGKDI-TGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEEC-----CCCHHHHHHHHHHHHcCCCcEEEECCCCh-hHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence 6899995 69999999999999999999999998877 4567888899999999999999999999999885
No 31
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.75 E-value=5e-18 Score=125.56 Aligned_cols=75 Identities=31% Similarity=0.529 Sum_probs=66.7
Q ss_pred HhhcCCEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHH
Q 020081 240 LITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMEL 319 (331)
Q Consensus 240 ~~~~~~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~ 319 (331)
+-++++|+||++ ++||+|.+|+++|+++|++|+++||+.+... +++.+.+|+.++|+|||||+++||+++++++
T Consensus 4 ~~~~~~V~ly~~-----~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~-~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~ 77 (79)
T TIGR02190 4 ARKPESVVVFTK-----PGCPFCAKAKATLKEKGYDFEEIPLGNDARG-RSLRAVTGATTVPQVFIGGKLIGGSDELEAY 77 (79)
T ss_pred cCCCCCEEEEEC-----CCCHhHHHHHHHHHHcCCCcEEEECCCChHH-HHHHHHHCCCCcCeEEECCEEEcCHHHHHHH
Confidence 345789999995 6999999999999999999999999877554 5677889999999999999999999999987
Q ss_pred H
Q 020081 320 K 320 (331)
Q Consensus 320 ~ 320 (331)
.
T Consensus 78 l 78 (79)
T TIGR02190 78 L 78 (79)
T ss_pred h
Confidence 4
No 32
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.74 E-value=1.4e-17 Score=125.00 Aligned_cols=73 Identities=19% Similarity=0.393 Sum_probs=66.4
Q ss_pred CEEEEecCCCCCCCCcchHHHHHHHhh-----cCCccEEEEecCCHHHHHHHHhhcCC--CCcCEEEECCeEEeeHHHHH
Q 020081 245 PVMLFMKGNPDSPRCGFSSKVVNALKE-----EGVNFGSFDILTDEEVRQGLKVYSNW--PTFPQLYHKGELIGGCDIVM 317 (331)
Q Consensus 245 ~v~vy~k~~p~~~~Cp~C~~a~~~l~~-----~~v~~~~~dv~~~~~~~~~l~~~~g~--~~vP~ifi~g~~igg~~~~~ 317 (331)
+|+||++ ++||+|++|+++|++ .+++|+++|+..+...++++.+++|+ .+||||||||+++||++++.
T Consensus 2 ~v~iy~~-----~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~ 76 (85)
T PRK11200 2 FVVIFGR-----PGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFE 76 (85)
T ss_pred EEEEEeC-----CCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHH
Confidence 6899994 699999999999999 89999999999887778889888875 89999999999999999999
Q ss_pred HHHHc
Q 020081 318 ELKDN 322 (331)
Q Consensus 318 ~~~~~ 322 (331)
++.+.
T Consensus 77 ~~~~~ 81 (85)
T PRK11200 77 AYVKE 81 (85)
T ss_pred HHHHH
Confidence 98753
No 33
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.74 E-value=1.5e-17 Score=125.06 Aligned_cols=73 Identities=21% Similarity=0.416 Sum_probs=64.9
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHhhc-----CCccEEEEecCCHHHHHHHHhhcCC--CCcCEEEECCeEEeeHHHHHH
Q 020081 246 VMLFMKGNPDSPRCGFSSKVVNALKEE-----GVNFGSFDILTDEEVRQGLKVYSNW--PTFPQLYHKGELIGGCDIVME 318 (331)
Q Consensus 246 v~vy~k~~p~~~~Cp~C~~a~~~l~~~-----~v~~~~~dv~~~~~~~~~l~~~~g~--~~vP~ifi~g~~igg~~~~~~ 318 (331)
|+||++ ++||||.+|+++|+++ +++|+++|+..+...++++.+.+|. .+||||||||+++||+++|.+
T Consensus 2 V~vys~-----~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~ 76 (86)
T TIGR02183 2 VVIFGR-----PGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQ 76 (86)
T ss_pred EEEEeC-----CCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHH
Confidence 789994 6999999999999998 4679999998777667788888886 899999999999999999999
Q ss_pred HHHcC
Q 020081 319 LKDNG 323 (331)
Q Consensus 319 ~~~~g 323 (331)
+.+.+
T Consensus 77 ~~~~~ 81 (86)
T TIGR02183 77 LVKEN 81 (86)
T ss_pred HHHhc
Confidence 98765
No 34
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.73 E-value=1.3e-17 Score=123.35 Aligned_cols=79 Identities=24% Similarity=0.512 Sum_probs=74.0
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechhhHHhhhcccch
Q 020081 16 VMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIAMHKSGEL 95 (331)
Q Consensus 16 vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~~~~~~~~l 95 (331)
|+||+.. |||+|.+++++|++++++|..+|++.+++.++++.+.+|..++|+||+||+.+||++++..++++|+|
T Consensus 1 v~ly~~~-----~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l 75 (79)
T TIGR02181 1 VTIYTKP-----YCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKL 75 (79)
T ss_pred CEEEecC-----CChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCCh
Confidence 5788865 99999999999999999999999999998888998889999999999999999999999999999999
Q ss_pred HHHH
Q 020081 96 KDVF 99 (331)
Q Consensus 96 ~~~l 99 (331)
.++|
T Consensus 76 ~~~l 79 (79)
T TIGR02181 76 DPLL 79 (79)
T ss_pred hhhC
Confidence 8875
No 35
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.69 E-value=7.1e-16 Score=135.88 Aligned_cols=167 Identities=15% Similarity=0.214 Sum_probs=103.5
Q ss_pred hHHHH-HHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhcC-----CCCeEEEecC--CCHHHHHHHHhhcCCCCccee
Q 020081 124 TLTSR-LESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQG-----KVDFGSFDIL--TDEEVRQGLKVYSNWSSYPQL 195 (331)
Q Consensus 124 ~~~~~-~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~i~~~~~di~--~~~~~~~~l~~~~~~~~vP~i 195 (331)
++++. ++.+.++..+++| +++.++||++|+.+.++|++. ++.+..++++ +++++. +++ ++.++|++
T Consensus 8 ~~~~~~~~~~~~~~~i~~f--~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~---~~~-~V~~~Pt~ 81 (215)
T TIGR02187 8 ILKELFLKELKNPVEIVVF--TDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEA---EKY-GVERVPTT 81 (215)
T ss_pred HHHHHHHHhcCCCeEEEEE--cCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHH---HHc-CCCccCEE
Confidence 34444 3334334444444 445568999999999988763 3455556665 556665 444 99999999
Q ss_pred --eecCcccc-chhhHHHHhhcchhHHHHhh----hccch-hhhhHHHHHHHHhhcCCEEEEecCCCCCCCCcchHHHHH
Q 020081 196 --YIKGELIG-GSDIVLEMQKSGELKKVLAE----KGITV-EKENLEDRLKNLITSSPVMLFMKGNPDSPRCGFSSKVVN 267 (331)
Q Consensus 196 --fi~G~~vg-g~d~~~~~~~~g~L~~~l~~----~~~~~-~~~~~~~~~~~~~~~~~v~vy~k~~p~~~~Cp~C~~a~~ 267 (331)
|-+|+.++ .+..+. ...+|.++|.. .+... -++...+.++.+-+...|++|+ .+|||+|+.++.
T Consensus 82 ~~f~~g~~~~~~~~G~~---~~~~l~~~i~~~~~~~~~~~~L~~~~~~~l~~~~~pv~I~~F~-----a~~C~~C~~~~~ 153 (215)
T TIGR02187 82 IILEEGKDGGIRYTGIP---AGYEFAALIEDIVRVSQGEPGLSEKTVELLQSLDEPVRIEVFV-----TPTCPYCPYAVL 153 (215)
T ss_pred EEEeCCeeeEEEEeecC---CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcEEEEEE-----CCCCCCcHHHHH
Confidence 44665543 221111 11233333332 22211 1344566666655556677788 579999999999
Q ss_pred HHhhc-----CCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCe
Q 020081 268 ALKEE-----GVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGE 308 (331)
Q Consensus 268 ~l~~~-----~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~ 308 (331)
++++. .+.+..+|++.+++ +.+.+|..++|+++++++
T Consensus 154 ~l~~l~~~~~~i~~~~vD~~~~~~----~~~~~~V~~vPtl~i~~~ 195 (215)
T TIGR02187 154 MAHKFALANDKILGEMIEANENPD----LAEKYGVMSVPKIVINKG 195 (215)
T ss_pred HHHHHHHhcCceEEEEEeCCCCHH----HHHHhCCccCCEEEEecC
Confidence 98764 36667777776665 555689999999998754
No 36
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.4e-16 Score=117.81 Aligned_cols=76 Identities=28% Similarity=0.562 Sum_probs=67.5
Q ss_pred CEEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCH--HHHHHHhhhhCCCcccEEEECCEEeechhhHHhhhcc
Q 020081 15 PVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDN--EVREGLKKFSNWPTFPQLYCKGELLGGCDIVIAMHKS 92 (331)
Q Consensus 15 ~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~--~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~~~~~~ 92 (331)
.|+||++. +||||.+++++|+++|+.|.++|++.++ +.++.+.+.+|.+|+|+||+||+++||++++.+++..
T Consensus 2 ~v~iyt~~-----~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~ 76 (80)
T COG0695 2 NVTIYTKP-----GCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAK 76 (80)
T ss_pred CEEEEECC-----CCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhh
Confidence 58999987 8999999999999999999999999886 7777777666999999999999999999988887666
Q ss_pred cch
Q 020081 93 GEL 95 (331)
Q Consensus 93 ~~l 95 (331)
+.|
T Consensus 77 ~~l 79 (80)
T COG0695 77 GKL 79 (80)
T ss_pred ccC
Confidence 554
No 37
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.69 E-value=1.7e-16 Score=130.12 Aligned_cols=88 Identities=24% Similarity=0.448 Sum_probs=77.5
Q ss_pred CEEEEEecC-CCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCC----CcccEEEECCEEeechhhHHhh
Q 020081 15 PVMLFMKGT-PEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNW----PTFPQLYCKGELLGGCDIVIAM 89 (331)
Q Consensus 15 ~vvvf~~~~-~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~----~t~P~ifi~g~~vgg~~~~~~~ 89 (331)
+|+||+.+- .--.+||+|++++.+|+.++|+|.++||+.++++++++.+.++. +|+|+||++|++|||++++.++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 478998540 00115999999999999999999999999999888888887765 9999999999999999999999
Q ss_pred hcccchHHHHHhc
Q 020081 90 HKSGELKDVFRDH 102 (331)
Q Consensus 90 ~~~~~l~~~l~~~ 102 (331)
+++|+|.++|+..
T Consensus 81 ~e~G~L~~lL~~~ 93 (147)
T cd03031 81 NESGELRKLLKGI 93 (147)
T ss_pred HHcCCHHHHHhhc
Confidence 9999999999987
No 38
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.68 E-value=2.4e-16 Score=113.39 Aligned_cols=71 Identities=38% Similarity=0.749 Sum_probs=67.3
Q ss_pred CEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHH
Q 020081 245 PVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELK 320 (331)
Q Consensus 245 ~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~ 320 (331)
+|++|+ .++||+|++++.+|++++++|.++|+..+++.++++.+++|..++|++|+||+++||++++++++
T Consensus 1 ~v~ly~-----~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 1 KVVVFS-----KSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred CEEEEE-----CCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence 589999 46999999999999999999999999999989999999999999999999999999999999986
No 39
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.68 E-value=3.1e-16 Score=114.59 Aligned_cols=74 Identities=24% Similarity=0.509 Sum_probs=67.5
Q ss_pred CEEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCC-cccEEEECCEEeechhhHHhhhccc
Q 020081 15 PVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWP-TFPQLYCKGELLGGCDIVIAMHKSG 93 (331)
Q Consensus 15 ~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~-t~P~ifi~g~~vgg~~~~~~~~~~~ 93 (331)
+|+||+.. +||+|.+++.+|++++++|..+|++.+++.++++.+..|.. ++|+||++|+++||++++++++++|
T Consensus 1 ~i~ly~~~-----~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g 75 (75)
T cd03418 1 KVEIYTKP-----NCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG 75 (75)
T ss_pred CEEEEeCC-----CChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence 47899876 99999999999999999999999998888888887777877 9999999999999999999988775
No 40
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.66 E-value=3.7e-16 Score=116.52 Aligned_cols=79 Identities=25% Similarity=0.596 Sum_probs=69.8
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHhCCCC--eEEEEecCC---HHHHHHHhhhhCCCcccEEEECCEEeechhhHHhhh
Q 020081 16 VMLFMKGTPEEPKCGFSRQVVDILKDEKVE--FGSFNILSD---NEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIAMH 90 (331)
Q Consensus 16 vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~--~~~vdi~~~---~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~~~~ 90 (331)
|++|+.. |||+|++++++|++++++ |..++++.+ .++++++.+.+|.+++|++|+||+++||++++.+++
T Consensus 1 V~~f~~~-----~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~ 75 (84)
T TIGR02180 1 VVVFSKS-----YCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALY 75 (84)
T ss_pred CEEEECC-----CChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHH
Confidence 5778765 999999999999999998 878887653 566777887889999999999999999999999999
Q ss_pred cccchHHHH
Q 020081 91 KSGELKDVF 99 (331)
Q Consensus 91 ~~~~l~~~l 99 (331)
++|+|.++|
T Consensus 76 ~~g~l~~~~ 84 (84)
T TIGR02180 76 KSGKLAELL 84 (84)
T ss_pred HcCChhhhC
Confidence 999998875
No 41
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.66 E-value=5.1e-16 Score=112.98 Aligned_cols=71 Identities=18% Similarity=0.294 Sum_probs=66.5
Q ss_pred CEEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechhhHHhhh
Q 020081 15 PVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIAMH 90 (331)
Q Consensus 15 ~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~~~~ 90 (331)
+|+||+.. |||+|++++.+|++++++|..+|++.+++.++++.++++..++|++|+||++|||++++.+++
T Consensus 2 ~v~ly~~~-----~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 2 RVTIYSRL-----GCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred EEEEEecC-----CChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhc
Confidence 58899976 999999999999999999999999999999999999999999999999999999999998764
No 42
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.65 E-value=4.9e-16 Score=108.60 Aligned_cols=60 Identities=33% Similarity=0.632 Sum_probs=57.4
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEE
Q 020081 246 VMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELI 310 (331)
Q Consensus 246 v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~i 310 (331)
|++|+ .++||+|.+++++|+++|++|+++||+.+++.++++++.+|..++|+|||||++|
T Consensus 1 V~vy~-----~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYT-----KPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEE-----STTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEE-----cCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 68999 4699999999999999999999999999999999999999999999999999986
No 43
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.63 E-value=1.1e-15 Score=113.62 Aligned_cols=78 Identities=29% Similarity=0.638 Sum_probs=70.0
Q ss_pred CEEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCC---HHHHHHHhhhhCCCcccEEEECCEEeechhhHHhhhc
Q 020081 15 PVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSD---NEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIAMHK 91 (331)
Q Consensus 15 ~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~---~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~~~~~ 91 (331)
+|++|+.. |||+|++++++|++++++|..++++.+ .+++..+.+++|.+++|++|++|+++||++++.++.+
T Consensus 1 ~v~~y~~~-----~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~ 75 (82)
T cd03419 1 PVVVFSKS-----YCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHK 75 (82)
T ss_pred CEEEEEcC-----CCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHH
Confidence 57888875 999999999999999999888888655 5567788889999999999999999999999999999
Q ss_pred ccchHH
Q 020081 92 SGELKD 97 (331)
Q Consensus 92 ~~~l~~ 97 (331)
+|+|.+
T Consensus 76 ~g~l~~ 81 (82)
T cd03419 76 SGKLVK 81 (82)
T ss_pred cCCccC
Confidence 999864
No 44
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.63 E-value=1.5e-15 Score=112.30 Aligned_cols=74 Identities=27% Similarity=0.474 Sum_probs=64.8
Q ss_pred HhhCCCEEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechhhHHhh
Q 020081 10 LLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIAM 89 (331)
Q Consensus 10 ~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~~~ 89 (331)
+-++++|+||++. |||+|++++.+|+++|++|..+|++.+.+.. .+.+.+|..++|+||+||+++||++++.++
T Consensus 4 ~~~~~~V~ly~~~-----~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~-~~~~~~g~~~vP~i~i~g~~igG~~~l~~~ 77 (79)
T TIGR02190 4 ARKPESVVVFTKP-----GCPFCAKAKATLKEKGYDFEEIPLGNDARGR-SLRAVTGATTVPQVFIGGKLIGGSDELEAY 77 (79)
T ss_pred cCCCCCEEEEECC-----CCHhHHHHHHHHHHcCCCcEEEECCCChHHH-HHHHHHCCCCcCeEEECCEEEcCHHHHHHH
Confidence 3467889999986 9999999999999999999999998886644 455578999999999999999999988764
No 45
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.63 E-value=9e-16 Score=147.23 Aligned_cols=80 Identities=23% Similarity=0.364 Sum_probs=69.7
Q ss_pred CCEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHH---H-----HHhhcCCCCcCEEEECCeEEeeHHH
Q 020081 244 SPVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQ---G-----LKVYSNWPTFPQLYHKGELIGGCDI 315 (331)
Q Consensus 244 ~~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~---~-----l~~~~g~~~vP~ifi~g~~igg~~~ 315 (331)
.+|+||++ ++||+|.+||++|+++||+|+++||+.++...+ + |...+|.++||||||||++||||++
T Consensus 2 ~~V~vys~-----~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~ 76 (410)
T PRK12759 2 VEVRIYTK-----TNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDN 76 (410)
T ss_pred CcEEEEeC-----CCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchH
Confidence 47999995 699999999999999999999999987775444 2 2234689999999999999999999
Q ss_pred HHHHHHcCCchhhhc
Q 020081 316 VMELKDNGELKSTLS 330 (331)
Q Consensus 316 ~~~~~~~g~L~~~l~ 330 (331)
+++ .+|+|.++|+
T Consensus 77 l~~--~~g~l~~~~~ 89 (410)
T PRK12759 77 LMA--RAGEVIARVK 89 (410)
T ss_pred HHH--HhCCHHHHhc
Confidence 988 8999999886
No 46
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.61 E-value=2.8e-15 Score=108.69 Aligned_cols=69 Identities=26% Similarity=0.463 Sum_probs=61.6
Q ss_pred CEEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechhhHHhh
Q 020081 15 PVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIAM 89 (331)
Q Consensus 15 ~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~~~ 89 (331)
+|+||++. |||+|.+++.+|++++++|..+|++.++. ...+.+.+|..++|+||+||+++||++++.++
T Consensus 2 ~v~lys~~-----~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~-~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~ 70 (72)
T cd03029 2 SVSLFTKP-----GCPFCARAKAALQENGISYEEIPLGKDIT-GRSLRAVTGAMTVPQVFIDGELIGGSDDLEKY 70 (72)
T ss_pred eEEEEECC-----CCHHHHHHHHHHHHcCCCcEEEECCCChh-HHHHHHHhCCCCcCeEEECCEEEeCHHHHHHH
Confidence 68999987 99999999999999999999999988874 45566678999999999999999999988764
No 47
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.57 E-value=1.2e-14 Score=109.00 Aligned_cols=72 Identities=19% Similarity=0.409 Sum_probs=62.1
Q ss_pred CEEEEEecCCCCCCChhHHHHHHHHHh-----CCCCeEEEEecCCHHHHHHHhhhhCC--CcccEEEECCEEeechhhHH
Q 020081 15 PVMLFMKGTPEEPKCGFSRQVVDILKD-----EKVEFGSFNILSDNEVREGLKKFSNW--PTFPQLYCKGELLGGCDIVI 87 (331)
Q Consensus 15 ~vvvf~~~~~~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~--~t~P~ifi~g~~vgg~~~~~ 87 (331)
+|+||++. |||+|++++++|++ .+++|..+|++.++...+.+.+.++. .++|+||+||+++||++++.
T Consensus 2 ~v~iy~~~-----~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~ 76 (85)
T PRK11200 2 FVVIFGRP-----GCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFE 76 (85)
T ss_pred EEEEEeCC-----CChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHH
Confidence 58899976 99999999999999 79999999999886555667666665 89999999999999999988
Q ss_pred hhhc
Q 020081 88 AMHK 91 (331)
Q Consensus 88 ~~~~ 91 (331)
++++
T Consensus 77 ~~~~ 80 (85)
T PRK11200 77 AYVK 80 (85)
T ss_pred HHHH
Confidence 7643
No 48
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.57 E-value=2.1e-14 Score=103.18 Aligned_cols=71 Identities=39% Similarity=0.820 Sum_probs=65.7
Q ss_pred CEEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechhhHHhhh
Q 020081 15 PVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIAMH 90 (331)
Q Consensus 15 ~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~~~~ 90 (331)
+|++|+.. |||+|++++.+|++++++|..+|++.+++.++.+.++++.+++|++|+||+.+||++++++++
T Consensus 1 ~v~ly~~~-----~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 1 KVVVFSKS-----TCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred CEEEEECC-----CCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence 57888876 999999999999999999999999999888899988999999999999999999999988764
No 49
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.56 E-value=1.5e-14 Score=108.62 Aligned_cols=72 Identities=21% Similarity=0.409 Sum_probs=60.2
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHhC-----CCCeEEEEecCCHHHHHHHhhhhCC--CcccEEEECCEEeechhhHHh
Q 020081 16 VMLFMKGTPEEPKCGFSRQVVDILKDE-----KVEFGSFNILSDNEVREGLKKFSNW--PTFPQLYCKGELLGGCDIVIA 88 (331)
Q Consensus 16 vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~~~~--~t~P~ifi~g~~vgg~~~~~~ 88 (331)
|+||+++ |||+|.+++++|+++ ++.|..+|++.+...+..+.+.+|. .|+|+||+||+++||++++.+
T Consensus 2 V~vys~~-----~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~ 76 (86)
T TIGR02183 2 VVIFGRP-----GCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQ 76 (86)
T ss_pred EEEEeCC-----CCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHH
Confidence 6889876 999999999999998 4679999998765445556667775 799999999999999999888
Q ss_pred hhcc
Q 020081 89 MHKS 92 (331)
Q Consensus 89 ~~~~ 92 (331)
+++.
T Consensus 77 ~~~~ 80 (86)
T TIGR02183 77 LVKE 80 (86)
T ss_pred HHHh
Confidence 6543
No 50
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.55 E-value=1.8e-14 Score=106.71 Aligned_cols=69 Identities=13% Similarity=0.286 Sum_probs=61.7
Q ss_pred CEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHH--HHHHH
Q 020081 245 PVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCD--IVMEL 319 (331)
Q Consensus 245 ~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~--~~~~~ 319 (331)
+|++|+ .++||+|++++++|+++||+|+++||+.+++.++++.. .|..++|+|+++|.+++||+ .+.++
T Consensus 2 ~v~lYt-----~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g~~~vPvv~i~~~~~~Gf~~~~l~~~ 72 (81)
T PRK10329 2 RITIYT-----RNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QGFRQLPVVIAGDLSWSGFRPDMINRL 72 (81)
T ss_pred EEEEEe-----CCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCCCcCEEEECCEEEecCCHHHHHHH
Confidence 689999 46999999999999999999999999999988888876 59999999999999999995 44444
No 51
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.54 E-value=1.7e-14 Score=104.62 Aligned_cols=64 Identities=19% Similarity=0.339 Sum_probs=57.6
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCe-EEeeHHH
Q 020081 246 VMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGE-LIGGCDI 315 (331)
Q Consensus 246 v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~-~igg~~~ 315 (331)
|+||+ .++||+|++|+++|+++|++|+++||..+++.++++.+ .|..+||+||+||. ++|||+-
T Consensus 1 v~ly~-----~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~-~g~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 1 ITVYS-----KNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKA-QGFRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CEEEe-----CCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCcccCEEEECCCcEEeccCH
Confidence 57899 46999999999999999999999999999999998886 48899999999775 9999863
No 52
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.52 E-value=5e-14 Score=98.35 Aligned_cols=60 Identities=25% Similarity=0.597 Sum_probs=56.5
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEe
Q 020081 16 VMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELL 80 (331)
Q Consensus 16 vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~v 80 (331)
|++|+.. |||+|++++.+|++++++|..+|++.+++.++++.+.+|..++|+||+||++|
T Consensus 1 V~vy~~~-----~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKP-----GCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEEST-----TSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcC-----CCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 6788875 99999999999999999999999999999999999888999999999999986
No 53
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.49 E-value=1.1e-13 Score=104.63 Aligned_cols=70 Identities=20% Similarity=0.387 Sum_probs=65.7
Q ss_pred hHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhC----CCcccEEEECCEEeechhhHHhhhcccchHHHHH
Q 020081 31 FSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSN----WPTFPQLYCKGELLGGCDIVIAMHKSGELKDVFR 100 (331)
Q Consensus 31 ~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~----~~t~P~ifi~g~~vgg~~~~~~~~~~~~l~~~l~ 100 (331)
.|++++.+|+.++|+|.++||+.+++.+++|.+.++ .+|+||||+||+++||++++.+++++|+|.++|+
T Consensus 18 ~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~e~g~L~~lLk 91 (92)
T cd03030 18 RQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAKENNTLEEFLK 91 (92)
T ss_pred HHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHHhCCCHHHHhC
Confidence 588999999999999999999999999999998765 4999999999999999999999999999999985
No 54
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.47 E-value=1.6e-13 Score=131.70 Aligned_cols=83 Identities=19% Similarity=0.355 Sum_probs=72.8
Q ss_pred CEEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhh--------hhCCCcccEEEECCEEeechhhH
Q 020081 15 PVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKK--------FSNWPTFPQLYCKGELLGGCDIV 86 (331)
Q Consensus 15 ~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~--------~~~~~t~P~ifi~g~~vgg~~~~ 86 (331)
+|+||+++ |||+|+++|.+|+++||+|..+||++++...+.+.+ .+|..|+|+||+||++|||++++
T Consensus 3 ~V~vys~~-----~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l 77 (410)
T PRK12759 3 EVRIYTKT-----NCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNL 77 (410)
T ss_pred cEEEEeCC-----CCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHH
Confidence 69999986 999999999999999999999999988754443322 36889999999999999999999
Q ss_pred HhhhcccchHHHHHhcCc
Q 020081 87 IAMHKSGELKDVFRDHGI 104 (331)
Q Consensus 87 ~~~~~~~~l~~~l~~~~~ 104 (331)
.+ ..|+|.++++.++.
T Consensus 78 ~~--~~g~l~~~~~~~~~ 93 (410)
T PRK12759 78 MA--RAGEVIARVKGSSL 93 (410)
T ss_pred HH--HhCCHHHHhcCCcc
Confidence 77 79999999999876
No 55
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.44 E-value=6.1e-13 Score=98.54 Aligned_cols=75 Identities=11% Similarity=0.227 Sum_probs=65.7
Q ss_pred CEEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechhhHHhhhcccc
Q 020081 15 PVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIAMHKSGE 94 (331)
Q Consensus 15 ~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~~~~~~~~ 94 (331)
+|+||++. |||+|++++.+|+++||+|.++|++.+++.++++. ..|..++|+++++|..+.||+ .++
T Consensus 2 ~v~lYt~~-----~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~-~~g~~~vPvv~i~~~~~~Gf~-------~~~ 68 (81)
T PRK10329 2 RITIYTRN-----DCVQCHATKRAMESRGFDFEMINVDRVPEAAETLR-AQGFRQLPVVIAGDLSWSGFR-------PDM 68 (81)
T ss_pred EEEEEeCC-----CCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHH-HcCCCCcCEEEECCEEEecCC-------HHH
Confidence 58899976 99999999999999999999999999998888887 469999999999999999998 466
Q ss_pred hHHHHHhc
Q 020081 95 LKDVFRDH 102 (331)
Q Consensus 95 l~~~l~~~ 102 (331)
|.+++-.+
T Consensus 69 l~~~~~~~ 76 (81)
T PRK10329 69 INRLHPAP 76 (81)
T ss_pred HHHHHHhh
Confidence 66666444
No 56
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.40 E-value=1.9e-12 Score=129.56 Aligned_cols=172 Identities=16% Similarity=0.229 Sum_probs=122.8
Q ss_pred HHHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC-----CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEE-C
Q 020081 3 LKSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE-----KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYC-K 76 (331)
Q Consensus 3 ~~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi-~ 76 (331)
+++.|+++-++..+++|... .|.+|..++.+|++. .|.+..+|..++.++.+.++ +...|++ .|+. +
T Consensus 357 l~~~~~~l~~~v~l~~~~~~-----~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~-v~~~P~~-~i~~~~ 429 (555)
T TIGR03143 357 LVGIFGRLENPVTLLLFLDG-----SNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPK-ITKLPTV-ALLDDD 429 (555)
T ss_pred HHHHHHhcCCCEEEEEEECC-----CchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcC-CCcCCEE-EEEeCC
Confidence 44455543332234444432 699999999999985 46788888888888888888 7777777 5553 5
Q ss_pred CEEee-chhhHHhhhcccchHHHHHhcCcccccCCCCCCCCCCcccchhHHHHHHHHhcCCCEEEEEecCCCCCCCcchH
Q 020081 77 GELLG-GCDIVIAMHKSGELKDVFRDHGIETVGGSGKSGISESTGLSATLTSRLESLINSSPVMLFMKGKPEEPKCGFSG 155 (331)
Q Consensus 77 g~~vg-g~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~ 155 (331)
|+..| .|-++...|+-..|...|-..+ + +...+++.++++++.+-++..|.+|.. ++||||.
T Consensus 430 ~~~~~i~f~g~P~G~Ef~s~i~~i~~~~------~------~~~~l~~~~~~~i~~~~~~~~i~v~~~-----~~C~~Cp 492 (555)
T TIGR03143 430 GNYTGLKFHGVPSGHELNSFILALYNAA------G------PGQPLGEELLEKIKKITKPVNIKIGVS-----LSCTLCP 492 (555)
T ss_pred CcccceEEEecCccHhHHHHHHHHHHhc------C------CCCCCCHHHHHHHHhcCCCeEEEEEEC-----CCCCCcH
Confidence 65432 5666666555555555554441 1 233456889999999988889999987 6899999
Q ss_pred HHHHHhhc----C-CCCeEEEecCCCHHHHHHHHhhcCCCCcceeeecCccc
Q 020081 156 KVVEILKQ----G-KVDFGSFDILTDEEVRQGLKVYSNWSSYPQLYIKGELI 202 (331)
Q Consensus 156 ~~~~~l~~----~-~i~~~~~di~~~~~~~~~l~~~~~~~~vP~ifi~G~~v 202 (331)
++.+.+++ + +|..+.+|+...++++ .++ ++.+||+++|||+.+
T Consensus 493 ~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~---~~~-~v~~vP~~~i~~~~~ 540 (555)
T TIGR03143 493 DVVLAAQRIASLNPNVEAEMIDVSHFPDLK---DEY-GIMSVPAIVVDDQQV 540 (555)
T ss_pred HHHHHHHHHHHhCCCceEEEEECcccHHHH---HhC-CceecCEEEECCEEE
Confidence 88877754 4 7999999988877766 444 999999999999654
No 57
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.39 E-value=1e-12 Score=95.23 Aligned_cols=63 Identities=17% Similarity=0.365 Sum_probs=56.7
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCE-Eeechh
Q 020081 16 VMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGE-LLGGCD 84 (331)
Q Consensus 16 vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~-~vgg~~ 84 (331)
|+||+.. +||+|++++.+|++++++|..+|++.+++.++.+.+ .|..++|+++++|+ .++|++
T Consensus 1 v~ly~~~-----~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~-~g~~~vP~v~~~g~~~~~G~~ 64 (72)
T TIGR02194 1 ITVYSKN-----NCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKA-QGFRQVPVIVADGDLSWSGFR 64 (72)
T ss_pred CEEEeCC-----CCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCcccCEEEECCCcEEeccC
Confidence 4678865 999999999999999999999999999988888884 58899999999775 899987
No 58
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.1e-12 Score=115.17 Aligned_cols=91 Identities=22% Similarity=0.313 Sum_probs=78.0
Q ss_pred hhcCCEEEEecCCCC-CCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCC----CCcCEEEECCeEEeeHHH
Q 020081 241 ITSSPVMLFMKGNPD-SPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNW----PTFPQLYHKGELIGGCDI 315 (331)
Q Consensus 241 ~~~~~v~vy~k~~p~-~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~----~~vP~ifi~g~~igg~~~ 315 (331)
.....||||+.+-.. +.+-..|..++.+|++++|.|+++||+.+..+++||.++.|. .++|+|||+|++|||.++
T Consensus 128 gge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaee 207 (281)
T KOG2824|consen 128 GGEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEE 207 (281)
T ss_pred CCCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHH
Confidence 345589999854221 123456999999999999999999999999999999998764 679999999999999999
Q ss_pred HHHHHHcCCchhhhcC
Q 020081 316 VMELKDNGELKSTLSE 331 (331)
Q Consensus 316 ~~~~~~~g~L~~~l~~ 331 (331)
+++|++.|+|..+|++
T Consensus 208 V~~LnE~GkL~~lL~~ 223 (281)
T KOG2824|consen 208 VVRLNEEGKLGKLLKG 223 (281)
T ss_pred hhhhhhcchHHHHHhc
Confidence 9999999999999974
No 59
>PTZ00102 disulphide isomerase; Provisional
Probab=99.36 E-value=3.8e-11 Score=118.00 Aligned_cols=90 Identities=13% Similarity=0.306 Sum_probs=64.6
Q ss_pred HHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC---------CCCeEEEEecCCHHHHHHHhhhhCCCcccEEE
Q 020081 4 KSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE---------KVEFGSFNILSDNEVREGLKKFSNWPTFPQLY 74 (331)
Q Consensus 4 ~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~---------~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~if 74 (331)
.+.+++++++++.++..+ |++||++|+++.+.+.+. ++.|..+|.+.+.++...++ +.+.||+ .+|
T Consensus 39 ~~~f~~~i~~~~~~lv~f---~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~-i~~~Pt~-~~~ 113 (477)
T PTZ00102 39 DSTFDKFITENEIVLVKF---YAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFG-VRGYPTI-KFF 113 (477)
T ss_pred hhhHHHHHhcCCcEEEEE---ECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcC-CCcccEE-EEE
Confidence 357888888877555544 467999999988766541 37789999999999999998 8999999 999
Q ss_pred ECCEEeechhhHHhhhcccchHHHHHhc
Q 020081 75 CKGELLGGCDIVIAMHKSGELKDVFRDH 102 (331)
Q Consensus 75 i~g~~vgg~~~~~~~~~~~~l~~~l~~~ 102 (331)
.+|+.+ .+.+... ...|.+++.+.
T Consensus 114 ~~g~~~-~y~g~~~---~~~l~~~l~~~ 137 (477)
T PTZ00102 114 NKGNPV-NYSGGRT---ADGIVSWIKKL 137 (477)
T ss_pred ECCceE-EecCCCC---HHHHHHHHHHh
Confidence 999765 3433221 23444444444
No 60
>PHA02278 thioredoxin-like protein
Probab=99.33 E-value=2.7e-12 Score=99.56 Aligned_cols=80 Identities=14% Similarity=0.181 Sum_probs=63.9
Q ss_pred ChHHHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC------CCCeEEEEecCC----HHHHHHHhhhhCCCcc
Q 020081 1 MLLKSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE------KVEFGSFNILSD----NEVREGLKKFSNWPTF 70 (331)
Q Consensus 1 ~~~~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~----~~~~~~~~~~~~~~t~ 70 (331)
|+..+.|++.++..+.+|..+ ||+||++|+.+.+.|+++ .+.|..+|++.+ +++.+.++ +.+.||+
T Consensus 1 ~~~~~~~~~~i~~~~~vvV~F---~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~-I~~iPT~ 76 (103)
T PHA02278 1 MNSLVDLNTAIRQKKDVIVMI---TQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFD-IMSTPVL 76 (103)
T ss_pred CCCHHHHHHHHhCCCcEEEEE---ECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCC-CccccEE
Confidence 566788999887665444443 467999999999988774 256999999876 68888888 9999999
Q ss_pred cEEEECCEEeechhh
Q 020081 71 PQLYCKGELLGGCDI 85 (331)
Q Consensus 71 P~ifi~g~~vgg~~~ 85 (331)
.+|.||+.++...|
T Consensus 77 -i~fk~G~~v~~~~G 90 (103)
T PHA02278 77 -IGYKDGQLVKKYED 90 (103)
T ss_pred -EEEECCEEEEEEeC
Confidence 99999999876654
No 61
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.32 E-value=7.2e-12 Score=90.34 Aligned_cols=66 Identities=21% Similarity=0.335 Sum_probs=60.3
Q ss_pred CEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHH
Q 020081 245 PVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDI 315 (331)
Q Consensus 245 ~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~ 315 (331)
+|++|+ .+|||+|++++.+|++.+++|..+|+..+++.++++.+.+|..++|+++++|+.++|++.
T Consensus 1 ~i~lf~-----~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 1 KVKVYT-----TPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDP 66 (74)
T ss_pred CEEEEc-----CCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCH
Confidence 378999 469999999999999999999999999998888888888999999999999999988753
No 62
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.31 E-value=8.5e-12 Score=95.09 Aligned_cols=86 Identities=26% Similarity=0.380 Sum_probs=63.8
Q ss_pred CEEEEecCCCCCCC-CcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcC---------CCCcCEEEECCeEEeeHH
Q 020081 245 PVMLFMKGNPDSPR-CGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSN---------WPTFPQLYHKGELIGGCD 314 (331)
Q Consensus 245 ~v~vy~k~~p~~~~-Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g---------~~~vP~ifi~g~~igg~~ 314 (331)
.|.||+.++-..+. =-.|.++..+|++++|+|+.+||..+++.++.|.+..| .+-.||||+||+++|+++
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence 47788754111000 12488999999999999999999999999999998773 344689999999999999
Q ss_pred HHHHHHHcCCchhhhc
Q 020081 315 IVMELKDNGELKSTLS 330 (331)
Q Consensus 315 ~~~~~~~~g~L~~~l~ 330 (331)
++.++++.|+|.+.|+
T Consensus 82 ~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 82 DFEEANENGELEEFLK 97 (99)
T ss_dssp HHHHHHCTT-HHHHHT
T ss_pred HHHHHHhhCHHHHHhC
Confidence 9999999999999885
No 63
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.30 E-value=4.5e-11 Score=118.78 Aligned_cols=160 Identities=16% Similarity=0.189 Sum_probs=108.6
Q ss_pred HHHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC-----CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECC
Q 020081 3 LKSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE-----KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKG 77 (331)
Q Consensus 3 ~~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g 77 (331)
+++.|+++-++..+++|.. .|++|..++.+|+++ +|++...+.. ...|++ .+..+|
T Consensus 10 l~~~~~~~~~~v~~~~~~~------~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~------------~~~p~~-~~~~~~ 70 (517)
T PRK15317 10 LKQYLELLERPIELVASLD------DSEKSAELKELLEEIASLSDKITVEEDSLD------------VRKPSF-SITRPG 70 (517)
T ss_pred HHHHHHhCCCCEEEEEEeC------CCchHHHHHHHHHHHHHhCCceEEEEccCC------------CCCCEE-EEEcCC
Confidence 3444544444444455543 499999999999996 3444332211 125666 555566
Q ss_pred EEee-chhhHHhhhcccchHHHHHhcCcccccCCCCCCCCCCcccchhHHHHHHHHhcCCCEEEEEecCCCCCCCcchHH
Q 020081 78 ELLG-GCDIVIAMHKSGELKDVFRDHGIETVGGSGKSGISESTGLSATLTSRLESLINSSPVMLFMKGKPEEPKCGFSGK 156 (331)
Q Consensus 78 ~~vg-g~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~ 156 (331)
+..| .|-++...|+-..|...|-..+ .+...+++.+++.++++.++..+.+|+. ++||||+.
T Consensus 71 ~~~~i~f~g~P~g~Ef~s~i~~i~~~~------------~~~~~l~~~~~~~i~~~~~~~~i~~fv~-----~~Cp~Cp~ 133 (517)
T PRK15317 71 EDTGVRFAGIPMGHEFTSLVLALLQVG------------GHPPKLDQEVIEQIKALDGDFHFETYVS-----LSCHNCPD 133 (517)
T ss_pred ccceEEEEecCccHHHHHHHHHHHHhc------------CCCCCCCHHHHHHHHhcCCCeEEEEEEc-----CCCCCcHH
Confidence 5543 5666666544444544444441 1234456889999999999999999998 69999999
Q ss_pred HHHHhhc-----CCCCeEEEecCCCHHHHHHHHhhcCCCCcceeeecCccc
Q 020081 157 VVEILKQ-----GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQLYIKGELI 202 (331)
Q Consensus 157 ~~~~l~~-----~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~ifi~G~~v 202 (331)
+.+.+++ .+|.++.+|....+++. .++ ++.+||++|+||+.+
T Consensus 134 ~v~~~~~~a~~~~~i~~~~id~~~~~~~~---~~~-~v~~VP~~~i~~~~~ 180 (517)
T PRK15317 134 VVQALNLMAVLNPNITHTMIDGALFQDEV---EAR-NIMAVPTVFLNGEEF 180 (517)
T ss_pred HHHHHHHHHHhCCCceEEEEEchhCHhHH---Hhc-CCcccCEEEECCcEE
Confidence 9888875 46778888877777776 444 999999999999765
No 64
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.30 E-value=2.8e-11 Score=121.14 Aligned_cols=172 Identities=16% Similarity=0.192 Sum_probs=114.5
Q ss_pred ccchhHHHHHHHHhc----CCCEEEEEecCCCCCCCcchHHHHHHhhc-----CCCCeEEEecCCCHHHHHHHHhhcCCC
Q 020081 120 GLSATLTSRLESLIN----SSPVMLFMKGKPEEPKCGFSGKVVEILKQ-----GKVDFGSFDILTDEEVRQGLKVYSNWS 190 (331)
Q Consensus 120 ~~~~~~~~~~~~~~~----~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-----~~i~~~~~di~~~~~~~~~l~~~~~~~ 190 (331)
++.++.++.+++++. +..+++|.. +.|.+|..++.+|++ .+|++..+|..++.+.+ +++ |+.
T Consensus 348 ~l~~~~~~~l~~~~~~l~~~v~l~~~~~-----~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~---~~~-~v~ 418 (555)
T TIGR03143 348 LLDDSLRQQLVGIFGRLENPVTLLLFLD-----GSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESE---TLP-KIT 418 (555)
T ss_pred ccCHHHHHHHHHHHHhcCCCEEEEEEEC-----CCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhH---hhc-CCC
Confidence 345555555655554 334444543 479999999999987 47778888887777766 333 899
Q ss_pred Ccceeee---cCcccc-chhhHHHHhhcchh-HHHHhhhccch-hhhhHHHHHHHHhhcCCEEEEecCCCCCCCCcchHH
Q 020081 191 SYPQLYI---KGELIG-GSDIVLEMQKSGEL-KKVLAEKGITV-EKENLEDRLKNLITSSPVMLFMKGNPDSPRCGFSSK 264 (331)
Q Consensus 191 ~vP~ifi---~G~~vg-g~d~~~~~~~~g~L-~~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~vy~k~~p~~~~Cp~C~~ 264 (331)
.+|++.+ +|+..| .|-.+..-++-..| ..++...+..+ -++.+.++++.+-+...|.+|. .|+||+|..
T Consensus 419 ~~P~~~i~~~~~~~~~i~f~g~P~G~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~v~~-----~~~C~~Cp~ 493 (555)
T TIGR03143 419 KLPTVALLDDDGNYTGLKFHGVPSGHELNSFILALYNAAGPGQPLGEELLEKIKKITKPVNIKIGV-----SLSCTLCPD 493 (555)
T ss_pred cCCEEEEEeCCCcccceEEEecCccHhHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEE-----CCCCCCcHH
Confidence 9999955 343321 11112111222232 22333333322 2677888888887888899998 579999999
Q ss_pred HHHHHh----hc-CCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeE
Q 020081 265 VVNALK----EE-GVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGEL 309 (331)
Q Consensus 265 a~~~l~----~~-~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~ 309 (331)
+.+.++ .. +|..+.+|+...++ +.+.++..+||.++|||+.
T Consensus 494 ~~~~~~~~~~~~~~i~~~~i~~~~~~~----~~~~~~v~~vP~~~i~~~~ 539 (555)
T TIGR03143 494 VVLAAQRIASLNPNVEAEMIDVSHFPD----LKDEYGIMSVPAIVVDDQQ 539 (555)
T ss_pred HHHHHHHHHHhCCCceEEEEECcccHH----HHHhCCceecCEEEECCEE
Confidence 888653 44 68899999977765 5556899999999999963
No 65
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.27 E-value=2e-11 Score=87.99 Aligned_cols=64 Identities=17% Similarity=0.314 Sum_probs=57.0
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechh
Q 020081 16 VMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCD 84 (331)
Q Consensus 16 vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~ 84 (331)
+++|+.. |||+|+++++.|++.+++|..+|++.++..++.+.+..+..++|+++++|+.+.|++
T Consensus 2 i~lf~~~-----~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~ 65 (74)
T TIGR02196 2 VKVYTTP-----WCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFD 65 (74)
T ss_pred EEEEcCC-----CChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCC
Confidence 6777765 999999999999999999999999988877777776889999999999999988875
No 66
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.26 E-value=2.3e-11 Score=95.35 Aligned_cols=77 Identities=9% Similarity=-0.024 Sum_probs=61.8
Q ss_pred HHHHHHHhh--CCCEEEEEecCCCCCCChhHHHHHHHHHhC-----C-CCeEEEEecCCHHHHHHHhhhhCCCcccEEEE
Q 020081 4 KSRLQQLLD--SHPVMLFMKGTPEEPKCGFSRQVVDILKDE-----K-VEFGSFNILSDNEVREGLKKFSNWPTFPQLYC 75 (331)
Q Consensus 4 ~~~~~~~i~--~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~-i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi 75 (331)
.+.+++.+. .+++||..+ ||+||++|+.+.+.|+++ + +.|..+|+++++++...++ +.+.||+ ++|.
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F---~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~-V~~iPTf-~~fk 76 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRF---GRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYE-LYDPPTV-MFFF 76 (114)
T ss_pred HHHHHHHHhccCCCEEEEEE---ECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcC-CCCCCEE-EEEE
Confidence 456777775 344444443 467999999999999884 3 5799999999999999998 9999999 9999
Q ss_pred CCEEeechhh
Q 020081 76 KGELLGGCDI 85 (331)
Q Consensus 76 ~g~~vgg~~~ 85 (331)
+|+.++...+
T Consensus 77 ~G~~v~~~~G 86 (114)
T cd02954 77 RNKHMKIDLG 86 (114)
T ss_pred CCEEEEEEcC
Confidence 9999975543
No 67
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.3e-11 Score=99.93 Aligned_cols=90 Identities=18% Similarity=0.270 Sum_probs=68.9
Q ss_pred HHHHH-HhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC------CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECC
Q 020081 5 SRLQQ-LLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE------KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKG 77 (331)
Q Consensus 5 ~~~~~-~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g 77 (331)
..+++ ++++..-||.. |||+||++|+.+.+.|+++ .+.|+.+|+|++.+++..|. ++.+||+ .+|+||
T Consensus 51 ~~~~~~Vi~S~~PVlVd---F~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~-I~avPtv-lvfknG 125 (150)
T KOG0910|consen 51 SEFDDKVINSDVPVLVD---FHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYE-ISAVPTV-LVFKNG 125 (150)
T ss_pred HHHHHHHHccCCCEEEE---EecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcc-eeeeeEE-EEEECC
Confidence 34444 44444333333 3678999999999999996 47899999999999999999 9999999 999999
Q ss_pred EEeechhhHHhhhcccchHHHHHhc
Q 020081 78 ELLGGCDIVIAMHKSGELKDVFRDH 102 (331)
Q Consensus 78 ~~vgg~~~~~~~~~~~~l~~~l~~~ 102 (331)
+.+.++.++.. ...|.++|++.
T Consensus 126 e~~d~~vG~~~---~~~l~~~i~k~ 147 (150)
T KOG0910|consen 126 EKVDRFVGAVP---KEQLRSLIKKF 147 (150)
T ss_pred EEeeeecccCC---HHHHHHHHHHH
Confidence 99877766554 45566666654
No 68
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.24 E-value=5.5e-11 Score=118.04 Aligned_cols=161 Identities=17% Similarity=0.222 Sum_probs=109.3
Q ss_pred HHHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC-----CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECC
Q 020081 3 LKSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE-----KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKG 77 (331)
Q Consensus 3 ~~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g 77 (331)
+++.|.++.++..+++|.. .|++|.+++++|++. .|.+...+.+. ...|++ .|..+|
T Consensus 10 l~~~~~~~~~~v~~~~~~~------~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~-----------~~~p~~-~~~~~~ 71 (515)
T TIGR03140 10 LKSYLASLENPVTLVLSAG------SHEKSKELLELLDEIASLSDKISLTQNTADT-----------LRKPSF-TILRDG 71 (515)
T ss_pred HHHHHHhcCCCEEEEEEeC------CCchhHHHHHHHHHHHHhCCCeEEEEecCCc-----------CCCCeE-EEecCC
Confidence 4455554443333444443 499999999999986 34554444321 124777 566677
Q ss_pred EEee-chhhHHhhhcccchHHHHHhcCcccccCCCCCCCCCCcccchhHHHHHHHHhcCCCEEEEEecCCCCCCCcchHH
Q 020081 78 ELLG-GCDIVIAMHKSGELKDVFRDHGIETVGGSGKSGISESTGLSATLTSRLESLINSSPVMLFMKGKPEEPKCGFSGK 156 (331)
Q Consensus 78 ~~vg-g~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~ 156 (331)
+..| .|-++...|+-..|...|-..+ .+...+++.+++.++++-++..+.+|+. ++||||+.
T Consensus 72 ~~~~i~f~g~P~g~Ef~s~i~~i~~~~------------~~~~~l~~~~~~~~~~~~~~~~i~~f~~-----~~Cp~Cp~ 134 (515)
T TIGR03140 72 ADTGIRFAGIPGGHEFTSLVLAILQVG------------GHGPKLDEGIIDRIRRLNGPLHFETYVS-----LTCQNCPD 134 (515)
T ss_pred cccceEEEecCCcHHHHHHHHHHHHhc------------CCCCCCCHHHHHHHHhcCCCeEEEEEEe-----CCCCCCHH
Confidence 6543 5566666544444554444441 1234556889999999999999999998 68999999
Q ss_pred HHHHhhc-----CCCCeEEEecCCCHHHHHHHHhhcCCCCcceeeecCccc
Q 020081 157 VVEILKQ-----GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQLYIKGELI 202 (331)
Q Consensus 157 ~~~~l~~-----~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~ifi~G~~v 202 (331)
+++.+++ .+|..+.+|....+++. .++ ++.+||++|+||+.+
T Consensus 135 ~v~~~~~~a~~~p~i~~~~id~~~~~~~~---~~~-~v~~VP~~~i~~~~~ 181 (515)
T TIGR03140 135 VVQALNQMALLNPNISHTMIDGALFQDEV---EAL-GIQGVPAVFLNGEEF 181 (515)
T ss_pred HHHHHHHHHHhCCCceEEEEEchhCHHHH---Hhc-CCcccCEEEECCcEE
Confidence 9888876 36677777877666666 444 999999999999766
No 69
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.20 E-value=7.5e-11 Score=84.79 Aligned_cols=66 Identities=23% Similarity=0.426 Sum_probs=60.4
Q ss_pred CEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHH
Q 020081 245 PVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDI 315 (331)
Q Consensus 245 ~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~ 315 (331)
++++|+ .+|||+|.+++.+|++.+++|..++++.+...++++.+..+..++|+|+++|+.++|++.
T Consensus 1 ~v~l~~-----~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYT-----KPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEe-----CCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecCCH
Confidence 478999 469999999999999999999999998888888888888888999999999999999875
No 70
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.18 E-value=8.5e-11 Score=91.28 Aligned_cols=90 Identities=18% Similarity=0.119 Sum_probs=67.2
Q ss_pred HHHHHHHhhC--CCEEEEEecCCCCCCChhHHHHHHHHHhC-----CCCeEEEEecCCH---HHHHHHhhhhCCCcccEE
Q 020081 4 KSRLQQLLDS--HPVMLFMKGTPEEPKCGFSRQVVDILKDE-----KVEFGSFNILSDN---EVREGLKKFSNWPTFPQL 73 (331)
Q Consensus 4 ~~~~~~~i~~--~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~---~~~~~~~~~~~~~t~P~i 73 (331)
.+.|++.++. +++||..+ |++||++|+.+.+.|+++ ++.|..+|+++++ ++.+.++ +.+.||+ .+
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F---~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~-V~~~Pt~-~~ 77 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEF---ALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREK-IIEVPHF-LF 77 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEE---ECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcC-CCcCCEE-EE
Confidence 4677777764 45555544 567999999999998874 5789999998874 6777777 8999999 99
Q ss_pred EECCEEeechhhHHhhhcccchHHHHHhc
Q 020081 74 YCKGELLGGCDIVIAMHKSGELKDVFRDH 102 (331)
Q Consensus 74 fi~g~~vgg~~~~~~~~~~~~l~~~l~~~ 102 (331)
|.+|+.++.+.+... .+|.+.+...
T Consensus 78 ~~~G~~v~~~~G~~~----~~l~~~~~~~ 102 (103)
T cd02985 78 YKDGEKIHEEEGIGP----DELIGDVLYY 102 (103)
T ss_pred EeCCeEEEEEeCCCH----HHHHHHHHhc
Confidence 999998877665433 5566665544
No 71
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.18 E-value=1.2e-10 Score=83.73 Aligned_cols=65 Identities=23% Similarity=0.449 Sum_probs=58.6
Q ss_pred CEEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechh
Q 020081 15 PVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCD 84 (331)
Q Consensus 15 ~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~ 84 (331)
++++|+.. |||+|.+++.+|++.+++|..+|++.++..++.+.++++..++|+++++|+.++|++
T Consensus 1 ~v~l~~~~-----~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~ 65 (73)
T cd02976 1 EVTVYTKP-----DCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGFR 65 (73)
T ss_pred CEEEEeCC-----CChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecCC
Confidence 46788865 999999999999999999999999988887888887778899999999999999987
No 72
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.14 E-value=1e-10 Score=92.41 Aligned_cols=91 Identities=18% Similarity=0.268 Sum_probs=64.0
Q ss_pred hHHH-HHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC-----CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEE
Q 020081 2 LLKS-RLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE-----KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYC 75 (331)
Q Consensus 2 ~~~~-~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi 75 (331)
++++ .++++.+..+++||. |++||++|+.++++|++. .+.|..+|+++++++...++ +.+.||+ .+|.
T Consensus 10 ~~~~~~~~~l~~~~~vvv~f----~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~-v~~vPt~-~i~~ 83 (113)
T cd02975 10 ALKEEFFKEMKNPVDLVVFS----SKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYG-VERVPTT-IFLQ 83 (113)
T ss_pred HHHHHHHHHhCCCeEEEEEe----CCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcC-CCcCCEE-EEEe
Confidence 3455 334455555666664 456999999999999885 36799999999999999888 8899998 8888
Q ss_pred CCEEee--chhhHHhhhcccchHHHHHh
Q 020081 76 KGELLG--GCDIVIAMHKSGELKDVFRD 101 (331)
Q Consensus 76 ~g~~vg--g~~~~~~~~~~~~l~~~l~~ 101 (331)
+|...+ .+.+... ..+|.++|..
T Consensus 84 ~g~~~~~~~~~G~~~---~~el~~~i~~ 108 (113)
T cd02975 84 DGGKDGGIRYYGLPA---GYEFASLIED 108 (113)
T ss_pred CCeecceEEEEecCc---hHHHHHHHHH
Confidence 775554 2333322 3455555544
No 73
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.14 E-value=1.7e-10 Score=84.13 Aligned_cols=64 Identities=17% Similarity=0.369 Sum_probs=55.7
Q ss_pred CEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhc-CCCCcCEEEE-CCeEEeeH
Q 020081 245 PVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYS-NWPTFPQLYH-KGELIGGC 313 (331)
Q Consensus 245 ~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~-g~~~vP~ifi-~g~~igg~ 313 (331)
+|++|+ .+|||+|++++.+|++.+++|+.+|++.++...+++.+++ +..++|+|++ ||+++...
T Consensus 1 ~v~ly~-----~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~ 66 (77)
T TIGR02200 1 TITVYG-----TTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNP 66 (77)
T ss_pred CEEEEE-----CCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCC
Confidence 478999 4699999999999999999999999998888888888886 8999999976 56776643
No 74
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.12 E-value=1.9e-10 Score=90.87 Aligned_cols=81 Identities=14% Similarity=0.082 Sum_probs=65.6
Q ss_pred HHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC-----CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCE
Q 020081 4 KSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE-----KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGE 78 (331)
Q Consensus 4 ~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~ 78 (331)
.+.|.+.++++..|+..+ |+|||++|+.+.+.|+++ ++.|..+|+++++++.+.+. +.+.||+ .+|.+|+
T Consensus 12 ~~~~~~~i~~~~~vvV~f---~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~-v~~vPt~-l~fk~G~ 86 (113)
T cd02989 12 EKEFFEIVKSSERVVCHF---YHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLN-IKVLPTV-ILFKNGK 86 (113)
T ss_pred HHHHHHHHhCCCcEEEEE---ECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCC-CccCCEE-EEEECCE
Confidence 367778887665444443 356999999999999873 68899999999999999998 9999999 9999999
Q ss_pred EeechhhHHhh
Q 020081 79 LLGGCDIVIAM 89 (331)
Q Consensus 79 ~vgg~~~~~~~ 89 (331)
.++.+.++...
T Consensus 87 ~v~~~~g~~~~ 97 (113)
T cd02989 87 TVDRIVGFEEL 97 (113)
T ss_pred EEEEEECcccc
Confidence 98877665443
No 75
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.09 E-value=5.6e-10 Score=81.36 Aligned_cols=65 Identities=15% Similarity=0.289 Sum_probs=54.6
Q ss_pred CEEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhh-CCCcccEEEE-CCEEeechh
Q 020081 15 PVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFS-NWPTFPQLYC-KGELLGGCD 84 (331)
Q Consensus 15 ~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~-~~~t~P~ifi-~g~~vgg~~ 84 (331)
+|++|..+ |||+|++++++|++++++|..+|+++++...+.+.+++ +..++|+++. +|+.+....
T Consensus 1 ~v~ly~~~-----~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTT-----WCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECC-----CChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCC
Confidence 36777765 99999999999999999999999999988888887776 8889999966 667765443
No 76
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.09 E-value=2.9e-10 Score=90.41 Aligned_cols=91 Identities=19% Similarity=0.298 Sum_probs=69.8
Q ss_pred HHHHHHHhhCCCEEEEEecCCCCCCChh--HH--HHHH--------HHHhCCCCeEEEEecCCHHHHHHHhhhhCCCccc
Q 020081 4 KSRLQQLLDSHPVMLFMKGTPEEPKCGF--SR--QVVD--------ILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFP 71 (331)
Q Consensus 4 ~~~~~~~i~~~~vvvf~~~~~~~~~C~~--C~--~~~~--------~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P 71 (331)
++.|++.+.+++.++..+. |++||++ |+ ++.+ .|+..++.|..+|++++++++..++ +.|.||+
T Consensus 16 ~~nF~~~v~~~~~~vvv~f--~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~-I~~iPTl- 91 (120)
T cd03065 16 EKNYKQVLKKYDVLCLLYH--EPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLG-LDEEDSI- 91 (120)
T ss_pred hhhHHHHHHhCCceEEEEE--CCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcC-CccccEE-
Confidence 5788998988864444433 6779987 98 4443 3334479999999999999999999 9999999
Q ss_pred EEEECCEEeechhhHHhhhcccchHHHHHhc
Q 020081 72 QLYCKGELLGGCDIVIAMHKSGELKDVFRDH 102 (331)
Q Consensus 72 ~ifi~g~~vgg~~~~~~~~~~~~l~~~l~~~ 102 (331)
.+|.||+.+. +.+.+. ...|.++|+++
T Consensus 92 ~lfk~G~~v~-~~G~~~---~~~l~~~l~~~ 118 (120)
T cd03065 92 YVFKDDEVIE-YDGEFA---ADTLVEFLLDL 118 (120)
T ss_pred EEEECCEEEE-eeCCCC---HHHHHHHHHHH
Confidence 9999999886 776544 46677777654
No 77
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.09 E-value=4.3e-10 Score=87.09 Aligned_cols=88 Identities=18% Similarity=0.216 Sum_probs=65.9
Q ss_pred HHHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC-------CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEE
Q 020081 3 LKSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE-------KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYC 75 (331)
Q Consensus 3 ~~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-------~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi 75 (331)
..+.+++++++++.++..+ |++||++|+.+.+.|... .+.|..+|++ ++++.+.++ +.+.||+ .+|.
T Consensus 6 ~~~~~~~~i~~~~~vvv~F---~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~-v~~~Pt~-~~~~ 79 (102)
T cd02948 6 NQEEWEELLSNKGLTVVDV---YQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYR-GKCEPTF-LFYK 79 (102)
T ss_pred CHHHHHHHHccCCeEEEEE---ECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcC-CCcCcEE-EEEE
Confidence 4577888888777665554 467999999999888763 2568888988 778888888 8999999 9999
Q ss_pred CCEEeechhhHHhhhcccchHHHHH
Q 020081 76 KGELLGGCDIVIAMHKSGELKDVFR 100 (331)
Q Consensus 76 ~g~~vgg~~~~~~~~~~~~l~~~l~ 100 (331)
+|+.++...+.. ...|.++|+
T Consensus 80 ~g~~~~~~~G~~----~~~~~~~i~ 100 (102)
T cd02948 80 NGELVAVIRGAN----APLLNKTIT 100 (102)
T ss_pred CCEEEEEEecCC----hHHHHHHHh
Confidence 999876554421 345555554
No 78
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.08 E-value=3.4e-10 Score=80.51 Aligned_cols=58 Identities=17% Similarity=0.253 Sum_probs=49.6
Q ss_pred CEEEEecCCCCCCCCcchHHHHHHHhhc-----CCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEe
Q 020081 245 PVMLFMKGNPDSPRCGFSSKVVNALKEE-----GVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIG 311 (331)
Q Consensus 245 ~v~vy~k~~p~~~~Cp~C~~a~~~l~~~-----~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~ig 311 (331)
+|++|+ .+|||+|++++++|++. +++|..+|++.+++ +.+.+|..++|+|++||++++
T Consensus 2 ~v~~f~-----~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~----l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFV-----SPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPD----LADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEE-----CCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh----HHHHcCCcccCEEEECCEEEE
Confidence 588999 46999999999999865 68899999977754 556689999999999999887
No 79
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=4.2e-10 Score=87.47 Aligned_cols=84 Identities=18% Similarity=0.208 Sum_probs=64.4
Q ss_pred HhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC-----CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechh
Q 020081 10 LLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE-----KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCD 84 (331)
Q Consensus 10 ~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~ 84 (331)
.-..++.+|+.++ ++|||+|+.+.+++.++ ++.|..+|+|+.+++.+.++ +...||| +++++|+.++.+.
T Consensus 17 ~~~~~kliVvdF~---a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~-V~~~PTf-~f~k~g~~~~~~v 91 (106)
T KOG0907|consen 17 AEAGDKLVVVDFY---ATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFN-VKAMPTF-VFYKGGEEVDEVV 91 (106)
T ss_pred hhCCCCeEEEEEE---CCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcC-ceEeeEE-EEEECCEEEEEEe
Confidence 3343455444443 46999999999999995 67899999999899999998 9999999 9999999888666
Q ss_pred hHHhhhcccchHHHHHhc
Q 020081 85 IVIAMHKSGELKDVFRDH 102 (331)
Q Consensus 85 ~~~~~~~~~~l~~~l~~~ 102 (331)
+... .+|++++..+
T Consensus 92 Ga~~----~~l~~~i~~~ 105 (106)
T KOG0907|consen 92 GANK----AELEKKIAKH 105 (106)
T ss_pred cCCH----HHHHHHHHhc
Confidence 5433 3666666543
No 80
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.07 E-value=1.1e-09 Score=108.95 Aligned_cols=159 Identities=19% Similarity=0.178 Sum_probs=100.4
Q ss_pred hhHHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc-----CCCCeEEEecCCCHHHHHHHHhhcCCCCcceeee
Q 020081 123 ATLTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ-----GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQLYI 197 (331)
Q Consensus 123 ~~~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-----~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~ifi 197 (331)
++.++.|+++.++..+++|.. .|++|.+++.+|++ .+|+++..+.. ...|++.+
T Consensus 8 ~~l~~~~~~~~~~v~~~~~~~------~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~---------------~~~p~~~~ 66 (517)
T PRK15317 8 TQLKQYLELLERPIELVASLD------DSEKSAELKELLEEIASLSDKITVEEDSLD---------------VRKPSFSI 66 (517)
T ss_pred HHHHHHHHhCCCCEEEEEEeC------CCchHHHHHHHHHHHHHhCCceEEEEccCC---------------CCCCEEEE
Confidence 445555555555666666654 59999999999987 35555443311 23588855
Q ss_pred --cCcccc-chhhHHHHhhcchh-HHHHhhhccch-hhhhHHHHHHHHhhcCCEEEEecCCCCCCCCcchHHHHHHHhhc
Q 020081 198 --KGELIG-GSDIVLEMQKSGEL-KKVLAEKGITV-EKENLEDRLKNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEE 272 (331)
Q Consensus 198 --~G~~vg-g~d~~~~~~~~g~L-~~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~vy~k~~p~~~~Cp~C~~a~~~l~~~ 272 (331)
+|+..| .|-.+..-++-..| ..+++-.+..+ -++...++++++-+...|.+|+ +|+||||..+++.+++.
T Consensus 67 ~~~~~~~~i~f~g~P~g~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~~fv-----~~~Cp~Cp~~v~~~~~~ 141 (517)
T PRK15317 67 TRPGEDTGVRFAGIPMGHEFTSLVLALLQVGGHPPKLDQEVIEQIKALDGDFHFETYV-----SLSCHNCPDVVQALNLM 141 (517)
T ss_pred EcCCccceEEEEecCccHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEE-----cCCCCCcHHHHHHHHHH
Confidence 343321 01111111222233 22233233322 2677888888888888999999 57999999999998665
Q ss_pred C-----CccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEe
Q 020081 273 G-----VNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIG 311 (331)
Q Consensus 273 ~-----v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~ig 311 (331)
. |..+.+|....++ +.+.++..+||++|+||+.+.
T Consensus 142 a~~~~~i~~~~id~~~~~~----~~~~~~v~~VP~~~i~~~~~~ 181 (517)
T PRK15317 142 AVLNPNITHTMIDGALFQD----EVEARNIMAVPTVFLNGEEFG 181 (517)
T ss_pred HHhCCCceEEEEEchhCHh----HHHhcCCcccCEEEECCcEEE
Confidence 4 5556665555555 555689999999999997655
No 81
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.05 E-value=9.6e-10 Score=86.78 Aligned_cols=81 Identities=15% Similarity=0.127 Sum_probs=63.7
Q ss_pred HHHHHHhhCC---CEEEEEecCCCCCCChhHHHHHHHHHhC-----CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEEC
Q 020081 5 SRLQQLLDSH---PVMLFMKGTPEEPKCGFSRQVVDILKDE-----KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCK 76 (331)
Q Consensus 5 ~~~~~~i~~~---~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~ 76 (331)
+.|.+.+... +.++..+ |+|||++|+.+.+.|+++ ++.|..+|++++ ++.+.++ +.+.||+ .+|.+
T Consensus 12 ~~f~~~i~~~~~~~~vvv~F---~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~-i~~~Pt~-~~f~~ 85 (113)
T cd02957 12 KEFLEEVTKASKGTRVVVHF---YEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLD-IKVLPTL-LVYKN 85 (113)
T ss_pred HHHHHHHHccCCCCEEEEEE---eCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcC-CCcCCEE-EEEEC
Confidence 5677776554 4333333 457999999999999874 678999999888 8888888 9999999 99999
Q ss_pred CEEeechhhHHhhhc
Q 020081 77 GELLGGCDIVIAMHK 91 (331)
Q Consensus 77 g~~vgg~~~~~~~~~ 91 (331)
|+.++.+.+...+..
T Consensus 86 G~~v~~~~G~~~~~~ 100 (113)
T cd02957 86 GELIDNIVGFEELGG 100 (113)
T ss_pred CEEEEEEecHHHhCC
Confidence 999988877666533
No 82
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4.6e-10 Score=100.46 Aligned_cols=81 Identities=19% Similarity=0.278 Sum_probs=71.5
Q ss_pred CCEEEEEecCCCCCCChhHHHHHHHHHhC------CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechhhHH
Q 020081 14 HPVMLFMKGTPEEPKCGFSRQVVDILKDE------KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIVI 87 (331)
Q Consensus 14 ~~vvvf~~~~~~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~ 87 (331)
.+|+|+. |+|||++|+...+.|+.+ ...+.++|+|.++.+...|+ +.++||+ ..|++|+.|.||.+.+
T Consensus 44 ~PVlV~f----Wap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfg-iqsIPtV-~af~dGqpVdgF~G~q 117 (304)
T COG3118 44 VPVLVDF----WAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFG-VQSIPTV-YAFKDGQPVDGFQGAQ 117 (304)
T ss_pred CCeEEEe----cCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhC-cCcCCeE-EEeeCCcCccccCCCC
Confidence 3677755 899999999999999985 35688999999999999999 9999999 9999999999999887
Q ss_pred hhhcccchHHHHHhcC
Q 020081 88 AMHKSGELKDVFRDHG 103 (331)
Q Consensus 88 ~~~~~~~l~~~l~~~~ 103 (331)
. ...+.++|.++.
T Consensus 118 P---esqlr~~ld~~~ 130 (304)
T COG3118 118 P---ESQLRQFLDKVL 130 (304)
T ss_pred c---HHHHHHHHHHhc
Confidence 6 567999999885
No 83
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.03 E-value=8.5e-10 Score=109.59 Aligned_cols=158 Identities=21% Similarity=0.208 Sum_probs=99.3
Q ss_pred hhHHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc-----CCCCeEEEecCCCHHHHHHHHhhcCCCCcceeee
Q 020081 123 ATLTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ-----GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQLYI 197 (331)
Q Consensus 123 ~~~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-----~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~ifi 197 (331)
++.++.|+++.++..+++|.. .|++|.+++++|++ .+|++...+... ...|.+.+
T Consensus 8 ~~l~~~~~~~~~~v~~~~~~~------~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~--------------~~~p~~~~ 67 (515)
T TIGR03140 8 AQLKSYLASLENPVTLVLSAG------SHEKSKELLELLDEIASLSDKISLTQNTADT--------------LRKPSFTI 67 (515)
T ss_pred HHHHHHHHhcCCCEEEEEEeC------CCchhHHHHHHHHHHHHhCCCeEEEEecCCc--------------CCCCeEEE
Confidence 345555555555555555654 49999999999986 356665554321 23488744
Q ss_pred --cCcccc-chhhHHHHhhcchhHHHHh----hhccch-hhhhHHHHHHHHhhcCCEEEEecCCCCCCCCcchHHHHHHH
Q 020081 198 --KGELIG-GSDIVLEMQKSGELKKVLA----EKGITV-EKENLEDRLKNLITSSPVMLFMKGNPDSPRCGFSSKVVNAL 269 (331)
Q Consensus 198 --~G~~vg-g~d~~~~~~~~g~L~~~l~----~~~~~~-~~~~~~~~~~~~~~~~~v~vy~k~~p~~~~Cp~C~~a~~~l 269 (331)
+|+..| .|-.+. ...+|.+++. -.+..+ -++...++++++-+...|.+|+ +++||||+.+++.+
T Consensus 68 ~~~~~~~~i~f~g~P---~g~Ef~s~i~~i~~~~~~~~~l~~~~~~~~~~~~~~~~i~~f~-----~~~Cp~Cp~~v~~~ 139 (515)
T TIGR03140 68 LRDGADTGIRFAGIP---GGHEFTSLVLAILQVGGHGPKLDEGIIDRIRRLNGPLHFETYV-----SLTCQNCPDVVQAL 139 (515)
T ss_pred ecCCcccceEEEecC---CcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEE-----eCCCCCCHHHHHHH
Confidence 444321 011111 2233333333 233322 2577888888888888999999 57999999999998
Q ss_pred hhcC-----CccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEee
Q 020081 270 KEEG-----VNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGG 312 (331)
Q Consensus 270 ~~~~-----v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg 312 (331)
++.. |..+.+|....++ +.+.++..+||++||||+.++.
T Consensus 140 ~~~a~~~p~i~~~~id~~~~~~----~~~~~~v~~VP~~~i~~~~~~~ 183 (515)
T TIGR03140 140 NQMALLNPNISHTMIDGALFQD----EVEALGIQGVPAVFLNGEEFHN 183 (515)
T ss_pred HHHHHhCCCceEEEEEchhCHH----HHHhcCCcccCEEEECCcEEEe
Confidence 6654 4455555544444 5566888999999999986653
No 84
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.01 E-value=6.9e-10 Score=78.94 Aligned_cols=58 Identities=9% Similarity=0.193 Sum_probs=48.2
Q ss_pred CEEEEEecCCCCCCChhHHHHHHHHHhC-----CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEee
Q 020081 15 PVMLFMKGTPEEPKCGFSRQVVDILKDE-----KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLG 81 (331)
Q Consensus 15 ~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vg 81 (331)
+|++|+.. |||+|++++++|+++ ++.|..+|+++++++.+.+ |..++|+++++|++++
T Consensus 2 ~v~~f~~~-----~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~----~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSP-----TCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEY----GVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECC-----CCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHc----CCcccCEEEECCEEEE
Confidence 47788765 999999999999986 6899999999888766544 5677899999999875
No 85
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.01 E-value=1.5e-09 Score=84.72 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=59.1
Q ss_pred HHHHHHHhh--CCCEEEEEecCCCCCCChhHHHHHHHHHhC-----C-CCeEEEEecCCHHHHHHHhhhhCCCcccEEEE
Q 020081 4 KSRLQQLLD--SHPVMLFMKGTPEEPKCGFSRQVVDILKDE-----K-VEFGSFNILSDNEVREGLKKFSNWPTFPQLYC 75 (331)
Q Consensus 4 ~~~~~~~i~--~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~-i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi 75 (331)
++.+++.|. ..++||.-++ ++|||+|+.+.++|.++ + +.|..+|+++.+++.+.+. ++..||+ .+|.
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~---a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~-I~amPtf-vffk 76 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFG---RDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFD-ISYIPST-IFFF 76 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEe---CCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcC-ceeCcEE-EEEE
Confidence 345566555 4566665553 67999999999999985 4 7799999999999999998 9999999 8999
Q ss_pred CCEEe
Q 020081 76 KGELL 80 (331)
Q Consensus 76 ~g~~v 80 (331)
+|+|+
T Consensus 77 ngkh~ 81 (114)
T cd02986 77 NGQHM 81 (114)
T ss_pred CCcEE
Confidence 99998
No 86
>PRK10996 thioredoxin 2; Provisional
Probab=98.99 E-value=1.4e-09 Score=89.05 Aligned_cols=91 Identities=19% Similarity=0.336 Sum_probs=70.2
Q ss_pred HHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC------CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECC
Q 020081 4 KSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE------KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKG 77 (331)
Q Consensus 4 ~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g 77 (331)
.+.+++++++.+.++..+ |++||++|+.+.+.|.+. ++.|..+|+++++++.+.++ +.+.||+ .+|.+|
T Consensus 42 ~~~~~~~i~~~k~vvv~F---~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~-V~~~Ptl-ii~~~G 116 (139)
T PRK10996 42 GETLDKLLQDDLPVVIDF---WAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFR-IRSIPTI-MIFKNG 116 (139)
T ss_pred HHHHHHHHhCCCeEEEEE---ECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcC-CCccCEE-EEEECC
Confidence 457888887776555544 457999999998888773 46788899999999999998 9999999 999999
Q ss_pred EEeechhhHHhhhcccchHHHHHhc
Q 020081 78 ELLGGCDIVIAMHKSGELKDVFRDH 102 (331)
Q Consensus 78 ~~vgg~~~~~~~~~~~~l~~~l~~~ 102 (331)
+.+..+.+.+. ...|.++|+++
T Consensus 117 ~~v~~~~G~~~---~e~l~~~l~~~ 138 (139)
T PRK10996 117 QVVDMLNGAVP---KAPFDSWLNEA 138 (139)
T ss_pred EEEEEEcCCCC---HHHHHHHHHHh
Confidence 98876655432 45677777653
No 87
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.99 E-value=6.5e-10 Score=84.80 Aligned_cols=85 Identities=18% Similarity=0.342 Sum_probs=61.8
Q ss_pred HHHHHhhCC---CEEEEEecCCCCCCChhHHHHHHHHHhC------CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEEC
Q 020081 6 RLQQLLDSH---PVMLFMKGTPEEPKCGFSRQVVDILKDE------KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCK 76 (331)
Q Consensus 6 ~~~~~i~~~---~vvvf~~~~~~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~ 76 (331)
.|++.+.++ .++|+. |++||++|+.+.+.|.++ .+.+..+|++.++++.+.++ +.+.||+ .+|.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f----~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~-i~~~Pt~-~~~~~ 75 (96)
T cd02956 2 NFQQVLQESTQVPVVVDF----WAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFG-VQALPTV-YLFAA 75 (96)
T ss_pred ChHHHHHhcCCCeEEEEE----ECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcC-CCCCCEE-EEEeC
Confidence 355666433 344444 467999999999988773 35678999999999999998 9999999 89999
Q ss_pred CEEeechhhHHhhhcccchHHHH
Q 020081 77 GELLGGCDIVIAMHKSGELKDVF 99 (331)
Q Consensus 77 g~~vgg~~~~~~~~~~~~l~~~l 99 (331)
|+.+..+.+... ..+|..+|
T Consensus 76 g~~~~~~~g~~~---~~~l~~~l 95 (96)
T cd02956 76 GQPVDGFQGAQP---EEQLRQML 95 (96)
T ss_pred CEEeeeecCCCC---HHHHHHHh
Confidence 998866654322 34455544
No 88
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.9e-08 Score=95.68 Aligned_cols=294 Identities=12% Similarity=0.147 Sum_probs=157.5
Q ss_pred HHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHh-------C--CCCeEEEEecCCHHHHHHHhhhhCCCcccEEE
Q 020081 4 KSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKD-------E--KVEFGSFNILSDNEVREGLKKFSNWPTFPQLY 74 (331)
Q Consensus 4 ~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~--~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~if 74 (331)
++.|.+.|..|..+++.+. ||||++|+++.+-+.+ . .|....||..++.++...+. +.|.||+ .||
T Consensus 32 ~dnf~~~i~~~~~vlVeFY---APWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~-v~gyPTl-kiF 106 (493)
T KOG0190|consen 32 KDNFKETINGHEFVLVEFY---APWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYE-VRGYPTL-KIF 106 (493)
T ss_pred cccHHHHhccCceEEEEEE---chhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhc-CCCCCeE-EEE
Confidence 5679999999999998886 5699999976654444 4 57799999999999999999 9999999 999
Q ss_pred ECCEEeechhhHHhhhcccchHHHHHhcCcccccCCCCCCCCCCcccchhHHHHHHHHhcCCCEEEEEecCCCCCCCcch
Q 020081 75 CKGELLGGCDIVIAMHKSGELKDVFRDHGIETVGGSGKSGISESTGLSATLTSRLESLINSSPVMLFMKGKPEEPKCGFS 154 (331)
Q Consensus 75 i~g~~vgg~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C 154 (331)
.||+...-|++.+. ...+..+|++.. ++ +...-.+.+.++.++.+..++++.+= ...-+.-
T Consensus 107 rnG~~~~~Y~G~r~---adgIv~wl~kq~-------gP------a~~~l~~~~~a~~~l~~~~~~vig~F---~d~~~~~ 167 (493)
T KOG0190|consen 107 RNGRSAQDYNGPRE---ADGIVKWLKKQS-------GP------ASKTLKTVDEAEEFLSKKDVVVIGFF---KDLESLA 167 (493)
T ss_pred ecCCcceeccCccc---HHHHHHHHHhcc-------CC------CceecccHHHHHhhccCCceEEEEEe---cccccch
Confidence 99987555665554 466888888772 21 11123456667777777666665431 1122222
Q ss_pred HHHHHHhhcCCCCeEEEecCCCHHHHHHHHhhcCCCCcceeeecCccccchhhHHHHhhcchhHHHHhhhccchhh---h
Q 020081 155 GKVVEILKQGKVDFGSFDILTDEEVRQGLKVYSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKKVLAEKGITVEK---E 231 (331)
Q Consensus 155 ~~~~~~l~~~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~ifi~G~~vgg~d~~~~~~~~g~L~~~l~~~~~~~~~---~ 231 (331)
.........+.-+|... +..+.++...+...... .+|..+.+..-..- ...........|...|.....++-. .
T Consensus 168 ~~~~~~a~~l~~d~~F~-~ts~~~~~~~~~~~~~~-~~~i~l~kk~d~~~-~~~~~~~~~~~l~~Fi~~~~~plv~~ft~ 244 (493)
T KOG0190|consen 168 ESFFDAASKLRDDYKFA-HTSDSDVAKKLELNTEG-TFPIVLFKKFDELL-VKYDGSFTPELLKKFIQENSLPLVTEFTV 244 (493)
T ss_pred HHHHHHHHhccccceee-ccCcHhHHhhccCCCCC-cceEEeccccccch-hhcccccCHHHHHHHHHHhcccccceecc
Confidence 23333333333333333 55677777555222122 44444443211111 0011122333466666655443210 1
Q ss_pred hHHHHHHHHhhcCCEEEEecCCCCCCCCcchHHHHHHH----hhcCCccEEEEecCCHHHHHHHHhhc-CCCCcC-EEEE
Q 020081 232 NLEDRLKNLITSSPVMLFMKGNPDSPRCGFSSKVVNAL----KEEGVNFGSFDILTDEEVRQGLKVYS-NWPTFP-QLYH 305 (331)
Q Consensus 232 ~~~~~~~~~~~~~~v~vy~k~~p~~~~Cp~C~~a~~~l----~~~~v~~~~~dv~~~~~~~~~l~~~~-g~~~vP-~ifi 305 (331)
.....+..-.-...+.+|. ...|---...++.+ .++.=.+.++-++ .......+...+ .....| .+.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~e~~~~~~~~vAk~f~~~l~Fi~~d-~e~~~~~~~~~Gl~~~~~~~~~v~ 318 (493)
T KOG0190|consen 245 ANNAKIYSSFVKLGLDFFV-----FFKCNRFEELRKKFEEVAKKFKGKLRFILID-PESFARVLEFFGLEEEQLPIRAVI 318 (493)
T ss_pred cccceeeccccccceeEEe-----ccccccHHHHHHHHHHHHHhcccceEEEEEC-hHHhhHHHHhcCcccccCCeeEEe
Confidence 1111111112223455555 23454444444433 3333234444442 122222333333 223455 5555
Q ss_pred CCeEEe------------eHHHHHHHHHcCCchhhhc
Q 020081 306 KGELIG------------GCDIVMELKDNGELKSTLS 330 (331)
Q Consensus 306 ~g~~ig------------g~~~~~~~~~~g~L~~~l~ 330 (331)
.....+ ....+..-+..|++.+.|+
T Consensus 319 ~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~~k 355 (493)
T KOG0190|consen 319 LNEDGSKYPLEEEELDQENIESFVKDFLDGKVKPHLK 355 (493)
T ss_pred eccccccccCccccccHHHHHHHHHHHhcCccccccc
Confidence 443221 1455666677888877764
No 89
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.98 E-value=1.2e-09 Score=82.33 Aligned_cols=71 Identities=18% Similarity=0.278 Sum_probs=58.9
Q ss_pred hHHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc-----CCCCeEEEecCCCHHHHHHHHhhcCCCCcceeeec
Q 020081 124 TLTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ-----GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQLYIK 198 (331)
Q Consensus 124 ~~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-----~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~ifi~ 198 (331)
..++.++++.++..+.+|+. +||+||+.+.+++++ .++++..+|+++.++.+ +++ |+.++|++++|
T Consensus 2 ~~~~~~~~l~~pv~i~~F~~-----~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a---~~~-~V~~vPt~vid 72 (89)
T cd03026 2 DLLEQIRRLNGPINFETYVS-----LSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEV---EER-GIMSVPAIFLN 72 (89)
T ss_pred hHHHHHHhcCCCEEEEEEEC-----CCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHH---HHc-CCccCCEEEEC
Confidence 35677888888889999987 689999999888875 37899999998877766 444 99999999999
Q ss_pred Ccccc
Q 020081 199 GELIG 203 (331)
Q Consensus 199 G~~vg 203 (331)
|+.+.
T Consensus 73 G~~~~ 77 (89)
T cd03026 73 GELFG 77 (89)
T ss_pred CEEEE
Confidence 97764
No 90
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.97 E-value=1.7e-09 Score=85.18 Aligned_cols=72 Identities=14% Similarity=0.116 Sum_probs=56.2
Q ss_pred CCCCChhHHHHHHHHHhC-------CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechhhHHhhhcccchHH
Q 020081 25 EEPKCGFSRQVVDILKDE-------KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIAMHKSGELKD 97 (331)
Q Consensus 25 ~~~~C~~C~~~~~~l~~~-------~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~~~~~~~~l~~ 97 (331)
|+|||++|+.+.+.+.++ ++.+..+|++.++.+...++ +.+.||+ .+|.+|+.+....+... ...|.+
T Consensus 32 ~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~-V~~~Pt~-~i~~~g~~~~~~~G~~~---~~~l~~ 106 (111)
T cd02963 32 TSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLG-AHSVPAI-VGIINGQVTFYHDSSFT---KQHVVD 106 (111)
T ss_pred ECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcC-CccCCEE-EEEECCEEEEEecCCCC---HHHHHH
Confidence 567999999998877662 57889999999999988888 9999999 89999998866554322 345666
Q ss_pred HHHh
Q 020081 98 VFRD 101 (331)
Q Consensus 98 ~l~~ 101 (331)
+|++
T Consensus 107 ~i~~ 110 (111)
T cd02963 107 FVRK 110 (111)
T ss_pred HHhc
Confidence 6653
No 91
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.97 E-value=2e-09 Score=86.15 Aligned_cols=76 Identities=18% Similarity=0.256 Sum_probs=54.9
Q ss_pred HHHHHHhhCCC-EEEEEecCCCCCCChhHHHHHHHHHhC----CCCeEEEEecCCH-----------HHHHHHh---hhh
Q 020081 5 SRLQQLLDSHP-VMLFMKGTPEEPKCGFSRQVVDILKDE----KVEFGSFNILSDN-----------EVREGLK---KFS 65 (331)
Q Consensus 5 ~~~~~~i~~~~-vvvf~~~~~~~~~C~~C~~~~~~l~~~----~i~~~~vdi~~~~-----------~~~~~~~---~~~ 65 (331)
+.+.+++++.+ ++||.. ++|||+|+++.+.|.+. ++++..+|++.+. ++++.+. .+.
T Consensus 14 ~~~~~~i~~~~~~iv~f~----~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~ 89 (122)
T TIGR01295 14 VRALEALDKKETATFFIG----RKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFM 89 (122)
T ss_pred HHHHHHHHcCCcEEEEEE----CCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCC
Confidence 56778887766 455442 35999999999988875 5889999998543 2333332 245
Q ss_pred CCCcccEEEECCEEeechhh
Q 020081 66 NWPTFPQLYCKGELLGGCDI 85 (331)
Q Consensus 66 ~~~t~P~ifi~g~~vgg~~~ 85 (331)
+.||+ .+|.+|+.++...|
T Consensus 90 ~~PT~-v~~k~Gk~v~~~~G 108 (122)
T TIGR01295 90 GTPTF-VHITDGKQVSVRCG 108 (122)
T ss_pred CCCEE-EEEeCCeEEEEEeC
Confidence 69999 89999999987754
No 92
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.97 E-value=1.1e-09 Score=84.53 Aligned_cols=77 Identities=10% Similarity=0.213 Sum_probs=62.0
Q ss_pred HHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC------CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECC
Q 020081 4 KSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE------KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKG 77 (331)
Q Consensus 4 ~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g 77 (331)
.+.|++.+++.++++..+ |++||++|+++.+.+.++ .+.|..+|+++++.+.+.++ +.+.||+ .+|.+|
T Consensus 8 ~~~f~~~v~~~~~~~v~f---~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~-~~~~~g 82 (101)
T cd03003 8 RGDFDAAVNSGEIWFVNF---YSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQG-VNSYPSL-YVFPSG 82 (101)
T ss_pred HhhHHHHhcCCCeEEEEE---ECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcC-CCccCEE-EEEcCC
Confidence 457888887777555554 467999999999998774 36788999999999988888 8999999 999999
Q ss_pred EEeechhh
Q 020081 78 ELLGGCDI 85 (331)
Q Consensus 78 ~~vgg~~~ 85 (331)
+.+..+.+
T Consensus 83 ~~~~~~~G 90 (101)
T cd03003 83 MNPEKYYG 90 (101)
T ss_pred CCcccCCC
Confidence 87765554
No 93
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.95 E-value=1.2e-09 Score=85.12 Aligned_cols=80 Identities=9% Similarity=0.092 Sum_probs=63.8
Q ss_pred HHHHHHHhhCCCEEEEEecCCCCCC--ChhHHHHHHHHHhC-----C-CCeEEEEecCCHHHHHHHhhhhCCCcccEEEE
Q 020081 4 KSRLQQLLDSHPVMLFMKGTPEEPK--CGFSRQVVDILKDE-----K-VEFGSFNILSDNEVREGLKKFSNWPTFPQLYC 75 (331)
Q Consensus 4 ~~~~~~~i~~~~vvvf~~~~~~~~~--C~~C~~~~~~l~~~-----~-i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi 75 (331)
+..|++.++...++|+.+ +++| ||.|+.+.++|+++ + +.|..+|++++++++..++ +.++||+ .+|.
T Consensus 17 ~~~~~~~~~~~~~~v~~f---~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~-V~sIPTl-i~fk 91 (111)
T cd02965 17 AATLDDWLAAGGDLVLLL---AGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFG-VLRTPAL-LFFR 91 (111)
T ss_pred cccHHHHHhCCCCEEEEe---cCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcC-CCcCCEE-EEEE
Confidence 345677776655444444 3566 99999999999884 2 5688999999999999999 9999999 9999
Q ss_pred CCEEeechhhHHh
Q 020081 76 KGELLGGCDIVIA 88 (331)
Q Consensus 76 ~g~~vgg~~~~~~ 88 (331)
+|+.++...|.+.
T Consensus 92 dGk~v~~~~G~~~ 104 (111)
T cd02965 92 DGRYVGVLAGIRD 104 (111)
T ss_pred CCEEEEEEeCccC
Confidence 9999988776544
No 94
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.95 E-value=1.5e-09 Score=83.48 Aligned_cols=91 Identities=13% Similarity=0.235 Sum_probs=71.1
Q ss_pred HHHHHHHhhC-CCEEEEEecCCCCCCChhHHHHHHHHHhC------CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEEC
Q 020081 4 KSRLQQLLDS-HPVMLFMKGTPEEPKCGFSRQVVDILKDE------KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCK 76 (331)
Q Consensus 4 ~~~~~~~i~~-~~vvvf~~~~~~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~ 76 (331)
.+.|++.+.+ ++.+|..+. ++||++|+.+++.|.+. ++.|..+|.++++.+.+.+. +.+.||+ .+|.+
T Consensus 6 ~~~f~~~i~~~~~~vvv~f~---~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~-v~~~Pt~-~~~~~ 80 (103)
T PF00085_consen 6 DENFEKFINESDKPVVVYFY---APWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYG-VKSVPTI-IFFKN 80 (103)
T ss_dssp TTTHHHHHTTTSSEEEEEEE---STTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTT-CSSSSEE-EEEET
T ss_pred HHHHHHHHHccCCCEEEEEe---CCCCCccccccceecccccccccccccchhhhhccchhhhccC-CCCCCEE-EEEEC
Confidence 3567788876 554444333 45999999999998873 58899999999999999998 9999999 99999
Q ss_pred CEEeechhhHHhhhcccchHHHHHhc
Q 020081 77 GELLGGCDIVIAMHKSGELKDVFRDH 102 (331)
Q Consensus 77 g~~vgg~~~~~~~~~~~~l~~~l~~~ 102 (331)
|+.+..+.+... ...|.++|+++
T Consensus 81 g~~~~~~~g~~~---~~~l~~~i~~~ 103 (103)
T PF00085_consen 81 GKEVKRYNGPRN---AESLIEFIEKH 103 (103)
T ss_dssp TEEEEEEESSSS---HHHHHHHHHHH
T ss_pred CcEEEEEECCCC---HHHHHHHHHcC
Confidence 999876665433 56788887764
No 95
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.92 E-value=1.8e-09 Score=85.18 Aligned_cols=77 Identities=18% Similarity=0.113 Sum_probs=59.7
Q ss_pred HHHHHHH---hhCCCEEEEEecCCCCCCChhHHHHHHHHHhC------CCCeEEEEecCCHHHH-HHHhhhhCCCcccEE
Q 020081 4 KSRLQQL---LDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE------KVEFGSFNILSDNEVR-EGLKKFSNWPTFPQL 73 (331)
Q Consensus 4 ~~~~~~~---i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~-~~~~~~~~~~t~P~i 73 (331)
++.|.++ ++++++++..+ |+|||++|+.+++.+++. .+.|..+|++.++.+. +.++ +.+.||+ .+
T Consensus 16 ~~~f~~~~~v~~~~~~vlV~F---yA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~-I~~~PTl-~l 90 (113)
T cd03006 16 KGQLDYAEELRTDAEVSLVMY---YAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKH-FFYFPVI-HL 90 (113)
T ss_pred hhhhHHHHhcccCCCEEEEEE---ECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcC-CcccCEE-EE
Confidence 3456654 57777777666 467999999999999885 2678999999888876 4677 8999999 99
Q ss_pred EECCEEeechhh
Q 020081 74 YCKGELLGGCDI 85 (331)
Q Consensus 74 fi~g~~vgg~~~ 85 (331)
|.+|+....+.+
T Consensus 91 f~~g~~~~~y~G 102 (113)
T cd03006 91 YYRSRGPIEYKG 102 (113)
T ss_pred EECCccceEEeC
Confidence 999986554543
No 96
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.8e-09 Score=87.59 Aligned_cols=88 Identities=22% Similarity=0.291 Sum_probs=64.5
Q ss_pred HHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc------CCCCeEEEecCCCHHHHHHHHhhcCCCCccee--e
Q 020081 125 LTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ------GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL--Y 196 (331)
Q Consensus 125 ~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~------~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i--f 196 (331)
..++-+.+++...-||..| |++||++|+.+.+.|++ ..+++..+|++++.+++ .+| ++..+|++ |
T Consensus 50 ~~~~~~~Vi~S~~PVlVdF---~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela---~~Y-~I~avPtvlvf 122 (150)
T KOG0910|consen 50 DSEFDDKVINSDVPVLVDF---HAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELA---EDY-EISAVPTVLVF 122 (150)
T ss_pred HHHHHHHHHccCCCEEEEE---ecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchH---hhc-ceeeeeEEEEE
Confidence 4445556778888888888 46899999999999986 46778999999999888 454 99999999 7
Q ss_pred ecCccccchhhHHHHhhcchhHHHHh
Q 020081 197 IKGELIGGSDIVLEMQKSGELKKVLA 222 (331)
Q Consensus 197 i~G~~vgg~d~~~~~~~~g~L~~~l~ 222 (331)
.||+.+ |.+.++.....|.++|+
T Consensus 123 knGe~~---d~~vG~~~~~~l~~~i~ 145 (150)
T KOG0910|consen 123 KNGEKV---DRFVGAVPKEQLRSLIK 145 (150)
T ss_pred ECCEEe---eeecccCCHHHHHHHHH
Confidence 799877 22333333444444444
No 97
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.91 E-value=3.7e-09 Score=81.01 Aligned_cols=80 Identities=26% Similarity=0.414 Sum_probs=59.9
Q ss_pred hCCCEEEEEecCCCCCCChhHHHHHHHHHh------CCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechhh
Q 020081 12 DSHPVMLFMKGTPEEPKCGFSRQVVDILKD------EKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDI 85 (331)
Q Consensus 12 ~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~ 85 (331)
+.+++++..+ |++||++|+.+.+.+++ .++.+..+|+++++++...++ +.+.||+ .+|.+|+.++.+.+
T Consensus 11 ~~~~~vlv~f---~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~-v~~vPt~-~i~~~g~~v~~~~g 85 (97)
T cd02949 11 ESDRLILVLY---TSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAG-IMGTPTV-QFFKDKELVKEISG 85 (97)
T ss_pred hCCCeEEEEE---ECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCC-CeeccEE-EEEECCeEEEEEeC
Confidence 3455444443 35699999999999877 247789999999999998888 8999999 89999998876665
Q ss_pred HHhhhcccchHHHH
Q 020081 86 VIAMHKSGELKDVF 99 (331)
Q Consensus 86 ~~~~~~~~~l~~~l 99 (331)
... ..+|.++|
T Consensus 86 ~~~---~~~~~~~l 96 (97)
T cd02949 86 VKM---KSEYREFI 96 (97)
T ss_pred Ccc---HHHHHHhh
Confidence 433 34455444
No 98
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.90 E-value=4.3e-09 Score=80.32 Aligned_cols=77 Identities=18% Similarity=0.294 Sum_probs=61.2
Q ss_pred HHHHHHHhhCC--CEEEEEecCCCCCCChhHHHHHHHHHhC------CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEE
Q 020081 4 KSRLQQLLDSH--PVMLFMKGTPEEPKCGFSRQVVDILKDE------KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYC 75 (331)
Q Consensus 4 ~~~~~~~i~~~--~vvvf~~~~~~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi 75 (331)
.+.+++++... +.++..+ |++||++|+++.+.|+++ ++.+..+|.++.+++...++ +.+.||+ .+|.
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f---~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~-i~~~Pt~-~~~~ 76 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHF---WAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFE-ITAVPTF-VFFR 76 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEE---ECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcC-CccccEE-EEEE
Confidence 45677878766 6555544 356999999999988872 57788899988899999998 9999999 9999
Q ss_pred CCEEeechhh
Q 020081 76 KGELLGGCDI 85 (331)
Q Consensus 76 ~g~~vgg~~~ 85 (331)
+|+.++...+
T Consensus 77 ~g~~~~~~~g 86 (97)
T cd02984 77 NGTIVDRVSG 86 (97)
T ss_pred CCEEEEEEeC
Confidence 9998765554
No 99
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=4.7e-09 Score=92.58 Aligned_cols=91 Identities=20% Similarity=0.384 Sum_probs=74.1
Q ss_pred CCCEEEEEecCC-CCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhC----CCcccEEEECCEEeechhhHH
Q 020081 13 SHPVMLFMKGTP-EEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSN----WPTFPQLYCKGELLGGCDIVI 87 (331)
Q Consensus 13 ~~~vvvf~~~~~-~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~----~~t~P~ifi~g~~vgg~~~~~ 87 (331)
.+.||||+.+-- =-..=-.|..++.+|+..+|.|.+.||.-|...+++|+++.| ..++|+||++|++|||.++++
T Consensus 130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~ 209 (281)
T KOG2824|consen 130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVV 209 (281)
T ss_pred CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhh
Confidence 346899874300 000113699999999999999999999988777777776654 578999999999999999999
Q ss_pred hhhcccchHHHHHhcC
Q 020081 88 AMHKSGELKDVFRDHG 103 (331)
Q Consensus 88 ~~~~~~~l~~~l~~~~ 103 (331)
+|++.|+|.++|+.+.
T Consensus 210 ~LnE~GkL~~lL~~~p 225 (281)
T KOG2824|consen 210 RLNEEGKLGKLLKGIP 225 (281)
T ss_pred hhhhcchHHHHHhcCC
Confidence 9999999999999985
No 100
>PTZ00051 thioredoxin; Provisional
Probab=98.90 E-value=3.8e-09 Score=80.81 Aligned_cols=78 Identities=15% Similarity=0.279 Sum_probs=64.4
Q ss_pred HHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC-----CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCE
Q 020081 4 KSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE-----KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGE 78 (331)
Q Consensus 4 ~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~ 78 (331)
.+.++++++.++.++..+ |++||++|+.+.+.|..+ ++.|..+|++++..+.+.++ +.+.||+ .+|.+|+
T Consensus 8 ~~~~~~~~~~~~~vli~f---~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~-~~~~~g~ 82 (98)
T PTZ00051 8 QAEFESTLSQNELVIVDF---YAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKEN-ITSMPTF-KVFKNGS 82 (98)
T ss_pred HHHHHHHHhcCCeEEEEE---ECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCC-CceeeEE-EEEeCCe
Confidence 467888888877665555 356999999999988873 68899999998899999988 8999999 9999999
Q ss_pred EeechhhH
Q 020081 79 LLGGCDIV 86 (331)
Q Consensus 79 ~vgg~~~~ 86 (331)
.++.+.|.
T Consensus 83 ~~~~~~G~ 90 (98)
T PTZ00051 83 VVDTLLGA 90 (98)
T ss_pred EEEEEeCC
Confidence 98876653
No 101
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.89 E-value=3.2e-09 Score=81.90 Aligned_cols=76 Identities=9% Similarity=0.041 Sum_probs=57.4
Q ss_pred HHHHHHhh--CCCEEEEEecCCCCCCChhHHHHHHHHHhC-----CCCeEEEEec-CCHHHHHHHhhhhCCCcccEEEEC
Q 020081 5 SRLQQLLD--SHPVMLFMKGTPEEPKCGFSRQVVDILKDE-----KVEFGSFNIL-SDNEVREGLKKFSNWPTFPQLYCK 76 (331)
Q Consensus 5 ~~~~~~i~--~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~-~~~~~~~~~~~~~~~~t~P~ifi~ 76 (331)
..+.+++. ++++++..+ |++||++|+++.+.|+++ ++.+..+|.+ .++.+...++ +.+.||+ .+|.+
T Consensus 7 ~~~~~~~~~~~g~~vlV~F---~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~-V~~~PT~-~lf~~ 81 (100)
T cd02999 7 NIALDLMAFNREDYTAVLF---YASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYG-VVGFPTI-LLFNS 81 (100)
T ss_pred hHHHHHHHhcCCCEEEEEE---ECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcC-CeecCEE-EEEcC
Confidence 44555554 345555554 467999999999999874 5778888988 6788999898 9999999 88888
Q ss_pred CEEeechhhH
Q 020081 77 GELLGGCDIV 86 (331)
Q Consensus 77 g~~vgg~~~~ 86 (331)
| .+..+.+.
T Consensus 82 g-~~~~~~G~ 90 (100)
T cd02999 82 T-PRVRYNGT 90 (100)
T ss_pred C-ceeEecCC
Confidence 8 55555543
No 102
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.87 E-value=8e-09 Score=84.20 Aligned_cols=79 Identities=6% Similarity=-0.076 Sum_probs=60.2
Q ss_pred HHHHHHHHhh--CCCEEEEEecCCCCCCChhHHHHHHHHHhC-----C-CCeEEEEecCCHHHHHHHhhhhCCCcccEEE
Q 020081 3 LKSRLQQLLD--SHPVMLFMKGTPEEPKCGFSRQVVDILKDE-----K-VEFGSFNILSDNEVREGLKKFSNWPTFPQLY 74 (331)
Q Consensus 3 ~~~~~~~~i~--~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~-i~~~~vdi~~~~~~~~~~~~~~~~~t~P~if 74 (331)
..+.+++.|. .+++||.-+ +++||++|+.+.++|++. + +.|..+|+|+++++...+. +.+.||+=.+|
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF---~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~-I~~~~t~~~ff 85 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRF---GHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYE-LYDPCTVMFFF 85 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEE---ECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcC-ccCCCcEEEEE
Confidence 3567777774 455555554 467999999999999985 3 5679999999999999999 88776662488
Q ss_pred ECCE-Eeechhh
Q 020081 75 CKGE-LLGGCDI 85 (331)
Q Consensus 75 i~g~-~vgg~~~ 85 (331)
.+|+ .+....+
T Consensus 86 k~g~~~vd~~tG 97 (142)
T PLN00410 86 RNKHIMIDLGTG 97 (142)
T ss_pred ECCeEEEEEecc
Confidence 9998 7765544
No 103
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.85 E-value=7.9e-09 Score=87.95 Aligned_cols=77 Identities=18% Similarity=0.247 Sum_probs=59.3
Q ss_pred HHHHHHhhCC----CEEEEEecCCCCCCChhHHHHHHHHHhC-----CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEE
Q 020081 5 SRLQQLLDSH----PVMLFMKGTPEEPKCGFSRQVVDILKDE-----KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYC 75 (331)
Q Consensus 5 ~~~~~~i~~~----~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi 75 (331)
+.|.+.+... .|||+. |++||++|+.+.+.|..+ .+.|..+|++.. .+...+. +.++||+ .+|.
T Consensus 71 ~~f~~~v~~~~~~~~VVV~F----ya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~-v~~vPTl-llyk 143 (175)
T cd02987 71 EQFLDAIDKEGKDTTVVVHI----YEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFD-TDALPAL-LVYK 143 (175)
T ss_pred HHHHHHHHhcCCCcEEEEEE----ECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCC-CCCCCEE-EEEE
Confidence 5566666543 355544 457999999999988875 578999999876 7788887 8999999 9999
Q ss_pred CCEEeechhhHHh
Q 020081 76 KGELLGGCDIVIA 88 (331)
Q Consensus 76 ~g~~vgg~~~~~~ 88 (331)
+|+.++.+.++.+
T Consensus 144 ~G~~v~~~vG~~~ 156 (175)
T cd02987 144 GGELIGNFVRVTE 156 (175)
T ss_pred CCEEEEEEechHH
Confidence 9999876655443
No 104
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.83 E-value=1.9e-07 Score=91.13 Aligned_cols=91 Identities=13% Similarity=0.343 Sum_probs=70.3
Q ss_pred HHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHh-------CC--CCeEEEEecCCHHHHHHHhhhhCCCcccEEE
Q 020081 4 KSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKD-------EK--VEFGSFNILSDNEVREGLKKFSNWPTFPQLY 74 (331)
Q Consensus 4 ~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~~--i~~~~vdi~~~~~~~~~~~~~~~~~t~P~if 74 (331)
.+.++++++++++++..+ |++||++|+++.+.+.+ .+ +.|..+|.+.++++.+.++ +.+.||+ .+|
T Consensus 8 ~~~~~~~i~~~~~~~v~f---~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~-i~~~Pt~-~~~ 82 (462)
T TIGR01130 8 KDNFDDFIKSHEFVLVEF---YAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYG-VSGYPTL-KIF 82 (462)
T ss_pred HHHHHHHHhcCCCEEEEE---ECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCC-CccccEE-EEE
Confidence 467888888888555444 46799999998877764 23 7889999999999999998 9999999 899
Q ss_pred ECCEE-eechhhHHhhhcccchHHHHHhc
Q 020081 75 CKGEL-LGGCDIVIAMHKSGELKDVFRDH 102 (331)
Q Consensus 75 i~g~~-vgg~~~~~~~~~~~~l~~~l~~~ 102 (331)
.+|+. +..+.+... ...|.+++.+.
T Consensus 83 ~~g~~~~~~~~g~~~---~~~l~~~i~~~ 108 (462)
T TIGR01130 83 RNGEDSVSDYNGPRD---ADGIVKYMKKQ 108 (462)
T ss_pred eCCccceeEecCCCC---HHHHHHHHHHh
Confidence 99987 555554332 45688888776
No 105
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.82 E-value=1.4e-08 Score=76.52 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=56.9
Q ss_pred HHHHHHHHhhcCCEEEEecCCCCCCCCcchHHHHHHHhhc-----CCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECC
Q 020081 233 LEDRLKNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEE-----GVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKG 307 (331)
Q Consensus 233 ~~~~~~~~~~~~~v~vy~k~~p~~~~Cp~C~~a~~~l~~~-----~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g 307 (331)
+.+.++.+.+...|.+|+ .+|||+|..+++++++. ++.|..+|++..++ +.+.+|..++|.+++||
T Consensus 3 ~~~~~~~l~~pv~i~~F~-----~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e----~a~~~~V~~vPt~vidG 73 (89)
T cd03026 3 LLEQIRRLNGPINFETYV-----SLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQD----EVEERGIMSVPAIFLNG 73 (89)
T ss_pred HHHHHHhcCCCEEEEEEE-----CCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHH----HHHHcCCccCCEEEECC
Confidence 456777777777899999 57999999999987554 68899999876655 45568999999999999
Q ss_pred eEEe
Q 020081 308 ELIG 311 (331)
Q Consensus 308 ~~ig 311 (331)
+.++
T Consensus 74 ~~~~ 77 (89)
T cd03026 74 ELFG 77 (89)
T ss_pred EEEE
Confidence 8766
No 106
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.81 E-value=1.5e-08 Score=83.26 Aligned_cols=89 Identities=12% Similarity=0.074 Sum_probs=63.6
Q ss_pred HHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC------CCCeEEEEecCC--HHHHHHHhhhhCCCcccEEEE-C
Q 020081 6 RLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE------KVEFGSFNILSD--NEVREGLKKFSNWPTFPQLYC-K 76 (331)
Q Consensus 6 ~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~--~~~~~~~~~~~~~~t~P~ifi-~ 76 (331)
.+++.+..++++|..+ |++||++|+.+.+.|.++ .+.|..+|++.+ ..+...++ +.++||+ .+|. +
T Consensus 12 ~~~~a~~~gk~vvV~F---~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~-V~~iPt~-v~~~~~ 86 (142)
T cd02950 12 PPEVALSNGKPTLVEF---YADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYR-VDGIPHF-VFLDRE 86 (142)
T ss_pred CHHHHHhCCCEEEEEE---ECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcC-CCCCCEE-EEECCC
Confidence 5677777776555544 567999999999988774 367888888765 46677777 8899998 6773 7
Q ss_pred CEEeechhhHHhhhcccchHHHHHhc
Q 020081 77 GELLGGCDIVIAMHKSGELKDVFRDH 102 (331)
Q Consensus 77 g~~vgg~~~~~~~~~~~~l~~~l~~~ 102 (331)
|+.++.+.+... ..+|.++|+..
T Consensus 87 G~~v~~~~G~~~---~~~l~~~l~~l 109 (142)
T cd02950 87 GNEEGQSIGLQP---KQVLAQNLDAL 109 (142)
T ss_pred CCEEEEEeCCCC---HHHHHHHHHHH
Confidence 988876655433 35566666665
No 107
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.81 E-value=9.6e-09 Score=80.22 Aligned_cols=71 Identities=20% Similarity=0.467 Sum_probs=57.9
Q ss_pred HHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC------------CCCeEEEEecCCHHHHHHHhhhhCCCccc
Q 020081 4 KSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE------------KVEFGSFNILSDNEVREGLKKFSNWPTFP 71 (331)
Q Consensus 4 ~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~------------~i~~~~vdi~~~~~~~~~~~~~~~~~t~P 71 (331)
.+.|++.++.++.++..+ |+|||++|+.+.+.+++. .+.|..+|.+.++++...++ +.+.||+
T Consensus 8 ~~~f~~~i~~~~~vlv~F---~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~-v~~~Ptl- 82 (108)
T cd02996 8 SGNIDDILQSAELVLVNF---YADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYR-INKYPTL- 82 (108)
T ss_pred HhhHHHHHhcCCEEEEEE---ECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCC-CCcCCEE-
Confidence 457888888877665555 467999999999888642 26788999999999999998 9999999
Q ss_pred EEEECCEE
Q 020081 72 QLYCKGEL 79 (331)
Q Consensus 72 ~ifi~g~~ 79 (331)
.+|.+|+.
T Consensus 83 ~~~~~g~~ 90 (108)
T cd02996 83 KLFRNGMM 90 (108)
T ss_pred EEEeCCcC
Confidence 89999984
No 108
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.80 E-value=1.8e-08 Score=83.49 Aligned_cols=77 Identities=17% Similarity=0.184 Sum_probs=59.8
Q ss_pred HHHHHHHhhCC--CEEEEEecCCCCCCChhHHHHHHHHHhC-------CCCeEEEEecCCHHHHHHHhhhhC------CC
Q 020081 4 KSRLQQLLDSH--PVMLFMKGTPEEPKCGFSRQVVDILKDE-------KVEFGSFNILSDNEVREGLKKFSN------WP 68 (331)
Q Consensus 4 ~~~~~~~i~~~--~vvvf~~~~~~~~~C~~C~~~~~~l~~~-------~i~~~~vdi~~~~~~~~~~~~~~~------~~ 68 (331)
.+.|++.+..+ +.++..+ |++||++|+.+.+.|+++ ++.|..+|+++++++.+.++ +.+ .|
T Consensus 35 ~~~f~~~l~~~~~~~vvV~F---ya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~-V~~~~~v~~~P 110 (152)
T cd02962 35 PKTLEEELERDKRVTWLVEF---FTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFR-VSTSPLSKQLP 110 (152)
T ss_pred HHHHHHHHHhcCCCEEEEEE---ECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcC-ceecCCcCCCC
Confidence 35677777433 3333333 467999999999988763 37899999999999999998 776 89
Q ss_pred cccEEEECCEEeechhh
Q 020081 69 TFPQLYCKGELLGGCDI 85 (331)
Q Consensus 69 t~P~ifi~g~~vgg~~~ 85 (331)
|+ .+|.+|+.++.+.+
T Consensus 111 T~-ilf~~Gk~v~r~~G 126 (152)
T cd02962 111 TI-ILFQGGKEVARRPY 126 (152)
T ss_pred EE-EEEECCEEEEEEec
Confidence 99 99999999986664
No 109
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.80 E-value=1.7e-08 Score=79.28 Aligned_cols=70 Identities=13% Similarity=0.092 Sum_probs=52.9
Q ss_pred HHHHHHhc--CCCEEEEEecCCCCCCCcchHHHHHHhhcC------CCCeEEEecCCCHHHHHHHHhhcCCCCccee--e
Q 020081 127 SRLESLIN--SSPVMLFMKGKPEEPKCGFSGKVVEILKQG------KVDFGSFDILTDEEVRQGLKVYSNWSSYPQL--Y 196 (331)
Q Consensus 127 ~~~~~~~~--~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~------~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i--f 196 (331)
+.+++.+. ..+++|..+ |++|||+|+.+.+.|.+. .+.|..+|+++++++. .++ ++.++||+ |
T Consensus 3 ~~~~~~i~~~~~~~vVV~F---~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la---~~~-~V~~iPTf~~f 75 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRF---GRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFN---KMY-ELYDPPTVMFF 75 (114)
T ss_pred HHHHHHHhccCCCEEEEEE---ECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHH---HHc-CCCCCCEEEEE
Confidence 34555554 466677667 457999999999988652 2568899999999887 333 99999999 6
Q ss_pred ecCcccc
Q 020081 197 IKGELIG 203 (331)
Q Consensus 197 i~G~~vg 203 (331)
.||+.++
T Consensus 76 k~G~~v~ 82 (114)
T cd02954 76 FRNKHMK 82 (114)
T ss_pred ECCEEEE
Confidence 7898874
No 110
>PRK09381 trxA thioredoxin; Provisional
Probab=98.79 E-value=1.8e-08 Score=78.80 Aligned_cols=90 Identities=19% Similarity=0.296 Sum_probs=64.3
Q ss_pred HHHHH-HhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC------CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECC
Q 020081 5 SRLQQ-LLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE------KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKG 77 (331)
Q Consensus 5 ~~~~~-~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g 77 (331)
+.+++ ++..++.++..+ |++|||+|+.+.+.|+++ ++.+..+|++.++.+...++ +.+.||+ .+|.+|
T Consensus 11 ~~~~~~v~~~~~~vvv~f---~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~-~~~~~G 85 (109)
T PRK09381 11 DSFDTDVLKADGAILVDF---WAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTL-LLFKNG 85 (109)
T ss_pred hhHHHHHhcCCCeEEEEE---ECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCC-CCcCCEE-EEEeCC
Confidence 34554 344344333333 457999999999888763 46789999999999888887 8888988 888999
Q ss_pred EEeechhhHHhhhcccchHHHHHhc
Q 020081 78 ELLGGCDIVIAMHKSGELKDVFRDH 102 (331)
Q Consensus 78 ~~vgg~~~~~~~~~~~~l~~~l~~~ 102 (331)
+.++.+.+... .++|.++|..+
T Consensus 86 ~~~~~~~G~~~---~~~l~~~i~~~ 107 (109)
T PRK09381 86 EVAATKVGALS---KGQLKEFLDAN 107 (109)
T ss_pred eEEEEecCCCC---HHHHHHHHHHh
Confidence 98876665433 35577776654
No 111
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.79 E-value=9.6e-09 Score=78.99 Aligned_cols=77 Identities=13% Similarity=0.284 Sum_probs=60.4
Q ss_pred HHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC---------CCCeEEEEecCCHHHHHHHhhhhCCCcccEEE
Q 020081 4 KSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE---------KVEFGSFNILSDNEVREGLKKFSNWPTFPQLY 74 (331)
Q Consensus 4 ~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~---------~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~if 74 (331)
.+.|++.+++.+++|+. |++||++|+.+.+.+++. .+.+..+|.+.++.+.+.++ +.+.||+ .+|
T Consensus 7 ~~~f~~~~~~~~~lv~f----~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~-~~~ 80 (102)
T cd03005 7 EDNFDHHIAEGNHFVKF----FAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQ-VRGYPTL-LLF 80 (102)
T ss_pred HHHHHHHhhcCCEEEEE----ECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcC-CCcCCEE-EEE
Confidence 35688888877766654 467999999998877663 36688889988888888888 8999999 889
Q ss_pred ECCEEeechhhH
Q 020081 75 CKGELLGGCDIV 86 (331)
Q Consensus 75 i~g~~vgg~~~~ 86 (331)
.+|+.+..+.+.
T Consensus 81 ~~g~~~~~~~G~ 92 (102)
T cd03005 81 KDGEKVDKYKGT 92 (102)
T ss_pred eCCCeeeEeeCC
Confidence 999877655543
No 112
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.78 E-value=7.5e-09 Score=80.22 Aligned_cols=77 Identities=10% Similarity=-0.021 Sum_probs=54.5
Q ss_pred HHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHH------h-C--CCCeEEEEecCC----HHHHHHHhhhhCCCccc
Q 020081 5 SRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILK------D-E--KVEFGSFNILSD----NEVREGLKKFSNWPTFP 71 (331)
Q Consensus 5 ~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~------~-~--~i~~~~vdi~~~----~~~~~~~~~~~~~~t~P 71 (331)
+.|.+.+++++.++..++ ++||++|+++.+.+. + + ++.+..+|++++ +++...++ +.+.||+
T Consensus 2 ~~~~~~~~~~k~vlv~f~---a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~-i~~~Pti- 76 (104)
T cd02953 2 AALAQALAQGKPVFVDFT---ADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFG-VFGPPTY- 76 (104)
T ss_pred HHHHHHHHcCCeEEEEEE---cchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcC-CCCCCEE-
Confidence 567888888886665553 569999999986551 1 1 577888888763 56666676 7888888
Q ss_pred EEEE--CCEEeechhhH
Q 020081 72 QLYC--KGELLGGCDIV 86 (331)
Q Consensus 72 ~ifi--~g~~vgg~~~~ 86 (331)
.+|. +|+.+..+.+.
T Consensus 77 ~~~~~~~g~~~~~~~G~ 93 (104)
T cd02953 77 LFYGPGGEPEPLRLPGF 93 (104)
T ss_pred EEECCCCCCCCcccccc
Confidence 7777 67776555443
No 113
>PHA02278 thioredoxin-like protein
Probab=98.77 E-value=1.3e-08 Score=78.93 Aligned_cols=70 Identities=19% Similarity=0.279 Sum_probs=50.4
Q ss_pred HHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhcC------CCCeEEEecCCC----HHHHHHHHhhcCCCCccee-
Q 020081 127 SRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQG------KVDFGSFDILTD----EEVRQGLKVYSNWSSYPQL- 195 (331)
Q Consensus 127 ~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~------~i~~~~~di~~~----~~~~~~l~~~~~~~~vP~i- 195 (331)
+.+.+.++..+.+|..+ |++||++|+.+.+.|++. .+.+..+|++.+ +++. +.+++.++||+
T Consensus 5 ~~~~~~i~~~~~vvV~F---~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~----~~~~I~~iPT~i 77 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMI---TQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAV----KLFDIMSTPVLI 77 (103)
T ss_pred HHHHHHHhCCCcEEEEE---ECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHH----HHCCCccccEEE
Confidence 45666666666666666 358999999998888542 356888899876 3444 33499999999
Q ss_pred -eecCcccc
Q 020081 196 -YIKGELIG 203 (331)
Q Consensus 196 -fi~G~~vg 203 (331)
|-||+.++
T Consensus 78 ~fk~G~~v~ 86 (103)
T PHA02278 78 GYKDGQLVK 86 (103)
T ss_pred EEECCEEEE
Confidence 66887774
No 114
>PHA02125 thioredoxin-like protein
Probab=98.77 E-value=2.1e-08 Score=73.11 Aligned_cols=61 Identities=16% Similarity=0.203 Sum_probs=45.4
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechhhH
Q 020081 16 VMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIV 86 (331)
Q Consensus 16 vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~ 86 (331)
+++|+. +||++|+.+++.|++....|..+|.++++++...++ +.+.||+ . +|+.++.+.+.
T Consensus 2 iv~f~a-----~wC~~Ck~~~~~l~~~~~~~~~vd~~~~~~l~~~~~-v~~~PT~---~-~g~~~~~~~G~ 62 (75)
T PHA02125 2 IYLFGA-----EWCANCKMVKPMLANVEYTYVDVDTDEGVELTAKHH-IRSLPTL---V-NTSTLDRFTGV 62 (75)
T ss_pred EEEEEC-----CCCHhHHHHHHHHHHHhheEEeeeCCCCHHHHHHcC-CceeCeE---E-CCEEEEEEeCC
Confidence 455553 499999999999998777787788878888877776 6665554 3 78777655543
No 115
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.75 E-value=8.2e-08 Score=70.25 Aligned_cols=71 Identities=13% Similarity=0.046 Sum_probs=59.7
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEE--CCeEEeeHHHHHHHHH
Q 020081 246 VMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYH--KGELIGGCDIVMELKD 321 (331)
Q Consensus 246 v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi--~g~~igg~~~~~~~~~ 321 (331)
+++|+ .+.||+|.+++.+|+++|++|+.+++........++.+.++..+||++.. +|..+.+.+.+.++.+
T Consensus 2 ~~Ly~-----~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~ 74 (77)
T cd03041 2 LELYE-----FEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLF 74 (77)
T ss_pred ceEec-----CCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHH
Confidence 57888 46999999999999999999999999876666777888888899999987 3678888877777654
No 116
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.75 E-value=2e-08 Score=79.30 Aligned_cols=67 Identities=15% Similarity=0.283 Sum_probs=48.9
Q ss_pred hhHHH-HHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhcC-----CCCeEEEecCCCHHHHHHHHhhcCCCCcceee
Q 020081 123 ATLTS-RLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQG-----KVDFGSFDILTDEEVRQGLKVYSNWSSYPQLY 196 (331)
Q Consensus 123 ~~~~~-~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~i~~~~~di~~~~~~~~~l~~~~~~~~vP~if 196 (331)
.++++ .++.+.++..++||.. ++||++|+.++++|++. .+.+..+|++++++++ .+ +++.++|+++
T Consensus 9 ~~~~~~~~~~l~~~~~vvv~f~----a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~---~~-~~v~~vPt~~ 80 (113)
T cd02975 9 KALKEEFFKEMKNPVDLVVFSS----KEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKA---EK-YGVERVPTTI 80 (113)
T ss_pred HHHHHHHHHHhCCCeEEEEEeC----CCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHH---HH-cCCCcCCEEE
Confidence 44555 3345666666666643 47999999999999752 4678899999888766 33 4999999996
Q ss_pred e
Q 020081 197 I 197 (331)
Q Consensus 197 i 197 (331)
+
T Consensus 81 i 81 (113)
T cd02975 81 F 81 (113)
T ss_pred E
Confidence 5
No 117
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.74 E-value=2.3e-08 Score=76.97 Aligned_cols=85 Identities=12% Similarity=0.137 Sum_probs=61.8
Q ss_pred HHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC-------CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEEC
Q 020081 4 KSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE-------KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCK 76 (331)
Q Consensus 4 ~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-------~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~ 76 (331)
.+.|+++++.. ++|+. |++||++|+.+.+.++++ ++.+..+|.++++.+...++ +.+.||+ .+|.+
T Consensus 8 ~~~f~~~~~~~-~lv~f----~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~-i~~~Pt~-~~~~~ 80 (101)
T cd02994 8 DSNWTLVLEGE-WMIEF----YAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFF-VTALPTI-YHAKD 80 (101)
T ss_pred hhhHHHHhCCC-EEEEE----ECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcC-CcccCEE-EEeCC
Confidence 45788888655 44443 467999999999988763 47788999999999988888 9999999 88889
Q ss_pred CEEeechhhHHhhhcccchHHHH
Q 020081 77 GELLGGCDIVIAMHKSGELKDVF 99 (331)
Q Consensus 77 g~~vgg~~~~~~~~~~~~l~~~l 99 (331)
|+. ..+.+... ..+|.+++
T Consensus 81 g~~-~~~~G~~~---~~~l~~~i 99 (101)
T cd02994 81 GVF-RRYQGPRD---KEDLISFI 99 (101)
T ss_pred CCE-EEecCCCC---HHHHHHHH
Confidence 974 44443222 34455544
No 118
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=98.73 E-value=5.5e-08 Score=74.23 Aligned_cols=70 Identities=24% Similarity=0.427 Sum_probs=57.0
Q ss_pred hHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhh---------CCCcccEEEECCEEeechhhHHhhhcccchHHHHH
Q 020081 31 FSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFS---------NWPTFPQLYCKGELLGGCDIVIAMHKSGELKDVFR 100 (331)
Q Consensus 31 ~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~---------~~~t~P~ifi~g~~vgg~~~~~~~~~~~~l~~~l~ 100 (331)
.|+++..+|+.++|+|..+||..+++.++.+.+.. +.+-.|+||.||+++|.|+++.++.+.++|.+.|+
T Consensus 19 ~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 19 RQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYEDFEEANENGELEEFLK 97 (99)
T ss_dssp HHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHHHHHHHHCTT-HHHHHT
T ss_pred HHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHHHHHHHHhhCHHHHHhC
Confidence 47789999999999999999999999999998765 34445899999999999999999999999999985
No 119
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.73 E-value=3.2e-08 Score=77.92 Aligned_cols=93 Identities=12% Similarity=0.151 Sum_probs=71.5
Q ss_pred HHHHHHHhhCCCEEEEEecCCCCCCCh---hHHHHHHHHHhC--CCCeEEEEec-----CCHHHHHHHhhhh--CCCccc
Q 020081 4 KSRLQQLLDSHPVMLFMKGTPEEPKCG---FSRQVVDILKDE--KVEFGSFNIL-----SDNEVREGLKKFS--NWPTFP 71 (331)
Q Consensus 4 ~~~~~~~i~~~~vvvf~~~~~~~~~C~---~C~~~~~~l~~~--~i~~~~vdi~-----~~~~~~~~~~~~~--~~~t~P 71 (331)
...|++.|++++.++..+.++| |||+ +|+++.+.+... .|.+..||++ ++.++.+.++ +. |.||+
T Consensus 8 ~~nF~~~v~~~~~vlV~F~A~~-Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~-I~~~gyPTl- 84 (116)
T cd03007 8 TVTFYKVIPKFKYSLVKFDTAY-PYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYK-LDKESYPVI- 84 (116)
T ss_pred hhhHHHHHhcCCcEEEEEeCCC-CCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhC-CCcCCCCEE-
Confidence 5689999999999988888888 9999 999999888664 4789999994 4678899998 88 99999
Q ss_pred EEEECCE--EeechhhH-HhhhcccchHHHHHhc
Q 020081 72 QLYCKGE--LLGGCDIV-IAMHKSGELKDVFRDH 102 (331)
Q Consensus 72 ~ifi~g~--~vgg~~~~-~~~~~~~~l~~~l~~~ 102 (331)
.+|.+|+ ....|++- +. ...|.+.++++
T Consensus 85 ~lF~~g~~~~~~~Y~G~~r~---~~~lv~~v~~~ 115 (116)
T cd03007 85 YLFHGGDFENPVPYSGADVT---VDALQRFLKGN 115 (116)
T ss_pred EEEeCCCcCCCccCCCCccc---HHHHHHHHHhc
Confidence 9999985 22234332 22 35566666654
No 120
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.73 E-value=1.5e-08 Score=78.60 Aligned_cols=90 Identities=10% Similarity=0.179 Sum_probs=60.5
Q ss_pred hHHHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC-------C--CCeEEEEecCCHHHHHHHhhhhCCCcccE
Q 020081 2 LLKSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE-------K--VEFGSFNILSDNEVREGLKKFSNWPTFPQ 72 (331)
Q Consensus 2 ~~~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-------~--i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ 72 (331)
++++.|+++.+...++|+. |++||++|+++.+.|+++ + +.+..+|++..+.+.+.++ +.+.||+ .
T Consensus 4 ~~~~~~~~~~~~~~vlv~f----~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-I~~~Pt~-~ 77 (104)
T cd03000 4 DLDDSFKDVRKEDIWLVDF----YAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFG-VRGYPTI-K 77 (104)
T ss_pred echhhhhhhccCCeEEEEE----ECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcC-CccccEE-E
Confidence 4567888866545454444 467999999988887662 2 5567788888888888888 8999998 7
Q ss_pred EEECCEEeechhhHHhhhcccchHHHHHh
Q 020081 73 LYCKGELLGGCDIVIAMHKSGELKDVFRD 101 (331)
Q Consensus 73 ifi~g~~vgg~~~~~~~~~~~~l~~~l~~ 101 (331)
+|.+|.. ..+.+.. ....|.+++++
T Consensus 78 l~~~~~~-~~~~G~~---~~~~l~~~~~~ 102 (104)
T cd03000 78 LLKGDLA-YNYRGPR---TKDDIVEFANR 102 (104)
T ss_pred EEcCCCc-eeecCCC---CHHHHHHHHHh
Confidence 7766633 2233221 23455555544
No 121
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.72 E-value=3.9e-08 Score=75.08 Aligned_cols=88 Identities=20% Similarity=0.388 Sum_probs=64.1
Q ss_pred HHHHHHhhCC--CEEEEEecCCCCCCChhHHHHHHHHHhC------CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEEC
Q 020081 5 SRLQQLLDSH--PVMLFMKGTPEEPKCGFSRQVVDILKDE------KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCK 76 (331)
Q Consensus 5 ~~~~~~i~~~--~vvvf~~~~~~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~ 76 (331)
+.+.+.++.+ .++|+. |++||++|+.+.+.|++. ++.|..+|.+.++++...++ +.+.||+ .+|.+
T Consensus 4 ~~~~~~~~~~~~~vvi~f----~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~P~~-~~~~~ 77 (101)
T TIGR01068 4 ANFDETIASSDKPVLVDF----WAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYG-IRSIPTL-LLFKN 77 (101)
T ss_pred HHHHHHHhhcCCcEEEEE----ECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcC-CCcCCEE-EEEeC
Confidence 4667766654 355554 346999999998888773 47899999999999888888 8888888 78889
Q ss_pred CEEeechhhHHhhhcccchHHHHHh
Q 020081 77 GELLGGCDIVIAMHKSGELKDVFRD 101 (331)
Q Consensus 77 g~~vgg~~~~~~~~~~~~l~~~l~~ 101 (331)
|+.+..+.+... ...|..+|++
T Consensus 78 g~~~~~~~g~~~---~~~l~~~l~~ 99 (101)
T TIGR01068 78 GKEVDRSVGALP---KAALKQLINK 99 (101)
T ss_pred CcEeeeecCCCC---HHHHHHHHHh
Confidence 987765554332 3456666654
No 122
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.70 E-value=6.2e-08 Score=75.10 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=52.6
Q ss_pred HHHHHHhc--CCCEEEEEecCCCCCCCcchHHHHHHhhc-----CCCCeEEEecCCCHHHHHHHHhhcCCCCccee--ee
Q 020081 127 SRLESLIN--SSPVMLFMKGKPEEPKCGFSGKVVEILKQ-----GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL--YI 197 (331)
Q Consensus 127 ~~~~~~~~--~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-----~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i--fi 197 (331)
+.+++.+. ..+++|..+ |++||++|+.+.+.|++ .++.|..+|+++++...+...++ ++.++|++ |.
T Consensus 4 ~~~~~~i~~~~~k~vvv~F---~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~-~V~~~Pt~~~~~ 79 (103)
T cd02985 4 EELDEALKKAKGRLVVLEF---ALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRRE-KIIEVPHFLFYK 79 (103)
T ss_pred HHHHHHHHHcCCCEEEEEE---ECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHc-CCCcCCEEEEEe
Confidence 44555554 367777777 56899999999888865 36778889988876545555555 99999998 45
Q ss_pred cCccc
Q 020081 198 KGELI 202 (331)
Q Consensus 198 ~G~~v 202 (331)
||+.+
T Consensus 80 ~G~~v 84 (103)
T cd02985 80 DGEKI 84 (103)
T ss_pred CCeEE
Confidence 78765
No 123
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=7.2e-08 Score=86.54 Aligned_cols=95 Identities=17% Similarity=0.263 Sum_probs=70.5
Q ss_pred cchhHHHHHHHHh---cCCCEEEEEecCCCCCCCcchHHHHHHhhc------CCCCeEEEecCCCHHHHHHHHhhcCCCC
Q 020081 121 LSATLTSRLESLI---NSSPVMLFMKGKPEEPKCGFSGKVVEILKQ------GKVDFGSFDILTDEEVRQGLKVYSNWSS 191 (331)
Q Consensus 121 ~~~~~~~~~~~~~---~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~------~~i~~~~~di~~~~~~~~~l~~~~~~~~ 191 (331)
+.+-+...|...+ +...-||+.| |+|||+.|+++.+.|.+ -++.+..+|++.++.+...+ |+.+
T Consensus 25 I~dvT~anfe~~V~~~S~~~PVlV~f---Wap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqf----giqs 97 (304)
T COG3118 25 IKDVTEANFEQEVIQSSREVPVLVDF---WAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQF----GVQS 97 (304)
T ss_pred ceechHhHHHHHHHHHccCCCeEEEe---cCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHh----CcCc
Confidence 5566667777544 2343556666 78999999999999976 35667899999999998544 9999
Q ss_pred ccee--eecCccccchhhHHHHhhcchhHHHHhhhc
Q 020081 192 YPQL--YIKGELIGGSDIVLEMQKSGELKKVLAEKG 225 (331)
Q Consensus 192 vP~i--fi~G~~vgg~d~~~~~~~~g~L~~~l~~~~ 225 (331)
+|++ |++|+.|.||.. ......|+++|....
T Consensus 98 IPtV~af~dGqpVdgF~G---~qPesqlr~~ld~~~ 130 (304)
T COG3118 98 IPTVYAFKDGQPVDGFQG---AQPESQLRQFLDKVL 130 (304)
T ss_pred CCeEEEeeCCcCccccCC---CCcHHHHHHHHHHhc
Confidence 9999 889999977653 344556677776543
No 124
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.69 E-value=4e-08 Score=76.03 Aligned_cols=77 Identities=18% Similarity=0.258 Sum_probs=57.8
Q ss_pred HHHHHHHhhCC-CEEEEEecCCCCCCChhHHHHHHHHHhC------CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEEC
Q 020081 4 KSRLQQLLDSH-PVMLFMKGTPEEPKCGFSRQVVDILKDE------KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCK 76 (331)
Q Consensus 4 ~~~~~~~i~~~-~vvvf~~~~~~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~ 76 (331)
.+.|++.+... ++++..+ |++||++|+++.+.++++ .+.|..+|.++++++.+.++ +.+.||+ .+|.+
T Consensus 8 ~~~f~~~i~~~~~~v~v~f---~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-i~~~Pt~-~~~~~ 82 (104)
T cd03004 8 PEDFPELVLNRKEPWLVDF---YAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQAN-IRAYPTI-RLYPG 82 (104)
T ss_pred HHHHHHHHhcCCCeEEEEE---ECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcC-CCcccEE-EEEcC
Confidence 34677776543 3333333 457999999999888774 47789999999999988887 9999999 89998
Q ss_pred C-EEeechhh
Q 020081 77 G-ELLGGCDI 85 (331)
Q Consensus 77 g-~~vgg~~~ 85 (331)
| +.+..+.+
T Consensus 83 g~~~~~~~~G 92 (104)
T cd03004 83 NASKYHSYNG 92 (104)
T ss_pred CCCCceEccC
Confidence 8 65555543
No 125
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.66 E-value=7e-08 Score=85.06 Aligned_cols=90 Identities=13% Similarity=0.232 Sum_probs=64.0
Q ss_pred HHHHHHHhhC------CCEEEEEecCCCCCCChhHHHHHHHHHhC------CCCeEEEEecCCHHHHHHHhhhhCCCccc
Q 020081 4 KSRLQQLLDS------HPVMLFMKGTPEEPKCGFSRQVVDILKDE------KVEFGSFNILSDNEVREGLKKFSNWPTFP 71 (331)
Q Consensus 4 ~~~~~~~i~~------~~vvvf~~~~~~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~t~P 71 (331)
.+.|++++.. ..++|+. |+|||++|+.+.+.+++. .+.+..+|.+.++++.+.++ +.+.||+
T Consensus 37 ~~nF~~~v~~~~~~~~~~vlV~F----yApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~-I~~~PTl- 110 (224)
T PTZ00443 37 DKNFEKLTQASTGATTGPWFVKF----YAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFA-IKGYPTL- 110 (224)
T ss_pred HHHHHHHHhhhcccCCCCEEEEE----ECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcC-CCcCCEE-
Confidence 4567777753 2344443 567999999999988774 36788899999999999998 9999999
Q ss_pred EEEECCEEeechhhHHhhhcccchHHHHHhc
Q 020081 72 QLYCKGELLGGCDIVIAMHKSGELKDVFRDH 102 (331)
Q Consensus 72 ~ifi~g~~vgg~~~~~~~~~~~~l~~~l~~~ 102 (331)
.+|.+|+.+.-..+.. ..++|.+.+...
T Consensus 111 ~~f~~G~~v~~~~G~~---s~e~L~~fi~~~ 138 (224)
T PTZ00443 111 LLFDKGKMYQYEGGDR---STEKLAAFALGD 138 (224)
T ss_pred EEEECCEEEEeeCCCC---CHHHHHHHHHHH
Confidence 9999998875333221 124455555444
No 126
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.66 E-value=3.9e-08 Score=75.80 Aligned_cols=76 Identities=16% Similarity=0.371 Sum_probs=56.6
Q ss_pred HHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC--------CCCeEEEEecC--CHHHHHHHhhhhCCCcccEEE
Q 020081 5 SRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE--------KVEFGSFNILS--DNEVREGLKKFSNWPTFPQLY 74 (331)
Q Consensus 5 ~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~--~~~~~~~~~~~~~~~t~P~if 74 (331)
+.+++++++++.++..+ |++||++|+.+.+.+.+. .+.+..+|.+. ++.+...++ +.+.||+ .+|
T Consensus 8 ~~~~~~~~~~~~~~v~f---~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~-i~~~Pt~-~~~ 82 (104)
T cd02997 8 EDFRKFLKKEKHVLVMF---YAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYN-VKGFPTF-KYF 82 (104)
T ss_pred HhHHHHHhhCCCEEEEE---ECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCC-CccccEE-EEE
Confidence 46778887776544443 456999999987766553 25677888887 788888887 8899998 899
Q ss_pred ECCEEeechhh
Q 020081 75 CKGELLGGCDI 85 (331)
Q Consensus 75 i~g~~vgg~~~ 85 (331)
.+|+.+..+.+
T Consensus 83 ~~g~~~~~~~g 93 (104)
T cd02997 83 ENGKFVEKYEG 93 (104)
T ss_pred eCCCeeEEeCC
Confidence 99987765553
No 127
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=5.3e-08 Score=84.77 Aligned_cols=88 Identities=15% Similarity=0.179 Sum_probs=68.9
Q ss_pred HHHHHhhCC--CEEEEEecCCCCCCChhHHHHHHHHHhC-----CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCE
Q 020081 6 RLQQLLDSH--PVMLFMKGTPEEPKCGFSRQVVDILKDE-----KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGE 78 (331)
Q Consensus 6 ~~~~~i~~~--~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~ 78 (331)
.|+..++.. +.|+.-+ +|.||++|+++.+++..+ +.-|.+||+++.+..+..++ ++.+||| .+|.||+
T Consensus 11 df~~~ls~ag~k~v~Vdf---ta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~g-V~amPTF-iff~ng~ 85 (288)
T KOG0908|consen 11 DFQRELSAAGGKLVVVDF---TASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNG-VNAMPTF-IFFRNGV 85 (288)
T ss_pred HHHHhhhccCceEEEEEE---EecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcC-cccCceE-EEEecCe
Confidence 445544433 3444433 456999999999999996 55699999999999899998 9999999 9999999
Q ss_pred EeechhhHHhhhcccchHHHHHhc
Q 020081 79 LLGGCDIVIAMHKSGELKDVFRDH 102 (331)
Q Consensus 79 ~vgg~~~~~~~~~~~~l~~~l~~~ 102 (331)
.|..+.+..+ ..|+++++++
T Consensus 86 kid~~qGAd~----~gLe~kv~~~ 105 (288)
T KOG0908|consen 86 KIDQIQGADA----SGLEEKVAKY 105 (288)
T ss_pred EeeeecCCCH----HHHHHHHHHH
Confidence 9986665433 5599999988
No 128
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.64 E-value=8.7e-08 Score=76.84 Aligned_cols=91 Identities=13% Similarity=0.149 Sum_probs=59.1
Q ss_pred HHHHHHHhhCC-CEEEEEecCCCCCCChhHHHHHHHHHh---------CCCCeEEEEecCC-------------HHHHHH
Q 020081 4 KSRLQQLLDSH-PVMLFMKGTPEEPKCGFSRQVVDILKD---------EKVEFGSFNILSD-------------NEVREG 60 (331)
Q Consensus 4 ~~~~~~~i~~~-~vvvf~~~~~~~~~C~~C~~~~~~l~~---------~~i~~~~vdi~~~-------------~~~~~~ 60 (331)
-+.++++.+++ ++++..+ |++||++|+++.+.+.+ .++.+..+|++.+ .++...
T Consensus 3 ~~~~~~a~~~~~k~vlv~f---~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~ 79 (125)
T cd02951 3 YEDLAEAAADGKKPLLLLF---SQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARK 79 (125)
T ss_pred HHHHHHHHHcCCCcEEEEE---eCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHH
Confidence 45677888888 6555444 46799999999875531 1456778888764 567777
Q ss_pred HhhhhCCCcccEEEEC--CEEeechhhHHhhhcccchHHHHHhc
Q 020081 61 LKKFSNWPTFPQLYCK--GELLGGCDIVIAMHKSGELKDVFRDH 102 (331)
Q Consensus 61 ~~~~~~~~t~P~ifi~--g~~vgg~~~~~~~~~~~~l~~~l~~~ 102 (331)
++ +.+.||+ .+|.+ |+.+....+... ...|.++|+..
T Consensus 80 ~~-v~~~Pt~-~~~~~~gg~~~~~~~G~~~---~~~~~~~l~~~ 118 (125)
T cd02951 80 YR-VRFTPTV-IFLDPEGGKEIARLPGYLP---PDEFLAYLEYV 118 (125)
T ss_pred cC-CccccEE-EEEcCCCCceeEEecCCCC---HHHHHHHHHHH
Confidence 77 7888887 56654 466654443322 35566666554
No 129
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.64 E-value=2.2e-07 Score=67.76 Aligned_cols=69 Identities=17% Similarity=0.379 Sum_probs=55.2
Q ss_pred CEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEEC----CeEEeeHHHHHHHH
Q 020081 245 PVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHK----GELIGGCDIVMELK 320 (331)
Q Consensus 245 ~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~----g~~igg~~~~~~~~ 320 (331)
++.+|. .+.||+|.+++.+|+.+|++|+.++++. ..+.++ +..+..+||+++++ |+.+.....+.++.
T Consensus 1 ~i~Ly~-----~~~~p~c~kv~~~L~~~gi~y~~~~~~~--~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL 72 (77)
T cd03040 1 KITLYQ-----YKTCPFCCKVRAFLDYHGIPYEVVEVNP--VSRKEI-KWSSYKKVPILRVESGGDGQQLVDSSVIISTL 72 (77)
T ss_pred CEEEEE-----cCCCHHHHHHHHHHHHCCCceEEEECCc--hhHHHH-HHhCCCccCEEEECCCCCccEEEcHHHHHHHH
Confidence 478898 4689999999999999999999999853 223444 34788899999987 77888877777765
Q ss_pred H
Q 020081 321 D 321 (331)
Q Consensus 321 ~ 321 (331)
+
T Consensus 73 ~ 73 (77)
T cd03040 73 K 73 (77)
T ss_pred H
Confidence 4
No 130
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.63 E-value=1.5e-07 Score=66.33 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=56.5
Q ss_pred EEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHH
Q 020081 247 MLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMEL 319 (331)
Q Consensus 247 ~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~ 319 (331)
.+|+ .++||+|.+++.+|+.++++|+.+++........++.+.++..++|+++++|..++....+.+.
T Consensus 2 ~ly~-----~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 2 KLYY-----FPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred EEEe-----CCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 4677 4689999999999999999999999875433223677788999999999999999988777665
No 131
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.62 E-value=1.2e-07 Score=69.92 Aligned_cols=55 Identities=15% Similarity=0.385 Sum_probs=43.2
Q ss_pred CEEEEEecCCCCCCCcchHHHHHHhhc----C--CCCeEEEecCCCHHHHHHHHhhcCCCCcceeeecCc
Q 020081 137 PVMLFMKGKPEEPKCGFSGKVVEILKQ----G--KVDFGSFDILTDEEVRQGLKVYSNWSSYPQLYIKGE 200 (331)
Q Consensus 137 ~vvvf~~~~~~~~~C~~C~~~~~~l~~----~--~i~~~~~di~~~~~~~~~l~~~~~~~~vP~ifi~G~ 200 (331)
.|.+|.. +||++|+.+.+.|++ . .+.+..+|++++++.. ++ +|+.++|+++++|+
T Consensus 2 ~v~~f~~-----~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~---~~-~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTS-----PTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKA---ME-YGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEEC-----CCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHH---HH-cCCccCCEEEECCE
Confidence 4667765 699999999999864 3 3667888988877665 34 49999999999886
No 132
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.61 E-value=1.1e-07 Score=70.68 Aligned_cols=75 Identities=20% Similarity=0.349 Sum_probs=57.9
Q ss_pred HHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHh-----CCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEe
Q 020081 6 RLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKD-----EKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELL 80 (331)
Q Consensus 6 ~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~v 80 (331)
.+++.++.++.++..+ |++||++|+.+.+.|++ .++.|..+|++.++.+...++ +.+.||+ .+|.+|+.+
T Consensus 2 ~~~~~~~~~~~~ll~~---~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-v~~~P~~-~~~~~g~~~ 76 (93)
T cd02947 2 EFEELIKSAKPVVVDF---WAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYG-VRSIPTF-LFFKNGKEV 76 (93)
T ss_pred chHHHHhcCCcEEEEE---ECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcC-cccccEE-EEEECCEEE
Confidence 3556666644433333 24599999999999988 578999999999899888888 8899998 888899877
Q ss_pred echhh
Q 020081 81 GGCDI 85 (331)
Q Consensus 81 gg~~~ 85 (331)
+.+.+
T Consensus 77 ~~~~g 81 (93)
T cd02947 77 DRVVG 81 (93)
T ss_pred EEEec
Confidence 65554
No 133
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.60 E-value=5.8e-08 Score=75.63 Aligned_cols=69 Identities=9% Similarity=0.246 Sum_probs=52.3
Q ss_pred HHHHHHHhhCC-C-EEEEEecCCCCCCChhHHHHHHHHHhC------CCCeEEEEecC--CHHHHHHHhhhhCCCcccEE
Q 020081 4 KSRLQQLLDSH-P-VMLFMKGTPEEPKCGFSRQVVDILKDE------KVEFGSFNILS--DNEVREGLKKFSNWPTFPQL 73 (331)
Q Consensus 4 ~~~~~~~i~~~-~-vvvf~~~~~~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~--~~~~~~~~~~~~~~~t~P~i 73 (331)
.+.+++.+.+. + ++|+. |++||++|+.+.+.+.++ .+.+..+|++. ++++...++ +.+.||+ .+
T Consensus 7 ~~~~~~~i~~~~~~~lv~f----~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~-i~~~Pt~-~~ 80 (109)
T cd03002 7 PKNFDKVVHNTNYTTLVEF----YAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYG-VQGFPTL-KV 80 (109)
T ss_pred hhhHHHHHhcCCCeEEEEE----ECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcC-CCcCCEE-EE
Confidence 34677777554 3 44433 457999999998888774 36688889987 678888888 8999999 88
Q ss_pred EECCE
Q 020081 74 YCKGE 78 (331)
Q Consensus 74 fi~g~ 78 (331)
|.+|+
T Consensus 81 ~~~~~ 85 (109)
T cd03002 81 FRPPK 85 (109)
T ss_pred EeCCC
Confidence 88886
No 134
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.59 E-value=1.2e-07 Score=75.41 Aligned_cols=73 Identities=15% Similarity=0.246 Sum_probs=53.2
Q ss_pred hHHHHHHHHhcCCCEEEEEecCCCCCCCcc--hH--HHH--------HHhhcCCCCeEEEecCCCHHHHHHHHhhcCCCC
Q 020081 124 TLTSRLESLINSSPVMLFMKGKPEEPKCGF--SG--KVV--------EILKQGKVDFGSFDILTDEEVRQGLKVYSNWSS 191 (331)
Q Consensus 124 ~~~~~~~~~~~~~~vvvf~~~~~~~~~C~~--C~--~~~--------~~l~~~~i~~~~~di~~~~~~~~~l~~~~~~~~ 191 (331)
-+.+.|++.+++++..+..+. |++||++ |+ .+. +.|++.++.+..+|++++++++ +++ |+++
T Consensus 14 lt~~nF~~~v~~~~~~vvv~f--~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La---~~~-~I~~ 87 (120)
T cd03065 14 LNEKNYKQVLKKYDVLCLLYH--EPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVA---KKL-GLDE 87 (120)
T ss_pred CChhhHHHHHHhCCceEEEEE--CCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHH---HHc-CCcc
Confidence 345778888877665554444 4568976 98 333 3333468899999999999888 444 9999
Q ss_pred ccee--eecCccc
Q 020081 192 YPQL--YIKGELI 202 (331)
Q Consensus 192 vP~i--fi~G~~v 202 (331)
+||+ |.||+.+
T Consensus 88 iPTl~lfk~G~~v 100 (120)
T cd03065 88 EDSIYVFKDDEVI 100 (120)
T ss_pred ccEEEEEECCEEE
Confidence 9999 7799866
No 135
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.59 E-value=8.5e-08 Score=73.46 Aligned_cols=90 Identities=12% Similarity=0.233 Sum_probs=62.7
Q ss_pred HHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC--------CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEE
Q 020081 4 KSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE--------KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYC 75 (331)
Q Consensus 4 ~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi 75 (331)
.+.|++.+++.++++..+ |++||++|+.+.+.|... ++.+..+|.++++.+.+.++ +.+.|++ .+|.
T Consensus 3 ~~~~~~~~~~~~~~~i~f---~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-i~~~P~~-~~~~ 77 (102)
T TIGR01126 3 ASNFDDIVLSNKDVLVEF---YAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFG-VSGFPTI-KFFP 77 (102)
T ss_pred hhhHHHHhccCCcEEEEE---ECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCC-CCcCCEE-EEec
Confidence 356788887777555554 356999999987777662 37788899999999988888 8888888 7787
Q ss_pred CCEEeechhhHHhhhcccchHHHHHh
Q 020081 76 KGELLGGCDIVIAMHKSGELKDVFRD 101 (331)
Q Consensus 76 ~g~~vgg~~~~~~~~~~~~l~~~l~~ 101 (331)
+|+.+..+.+-.. ..+|..+|.+
T Consensus 78 ~~~~~~~~~g~~~---~~~l~~~i~~ 100 (102)
T TIGR01126 78 KGKKPVDYEGGRD---LEAIVEFVNE 100 (102)
T ss_pred CCCcceeecCCCC---HHHHHHHHHh
Confidence 7764333333211 3446666654
No 136
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.8e-07 Score=89.62 Aligned_cols=158 Identities=16% Similarity=0.262 Sum_probs=94.6
Q ss_pred CCCChhHHHHHHHHHhC-----C-CCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechhhHHhhhcccchHHHH
Q 020081 26 EPKCGFSRQVVDILKDE-----K-VEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIAMHKSGELKDVF 99 (331)
Q Consensus 26 ~~~C~~C~~~~~~l~~~-----~-i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~~~~~~~~l~~~l 99 (331)
+|||++|++..+.+.+. + +.+..+|.+.+.++...+. +.|.||+ .+|..|..+-.+.+. .....+...+
T Consensus 56 apwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~-i~gfPtl-~~f~~~~~~~~~~~~---~~~~~~~~~~ 130 (383)
T KOG0191|consen 56 APWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYG-IQGFPTL-KVFRPGKKPIDYSGP---RNAESLAEFL 130 (383)
T ss_pred CCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcC-CccCcEE-EEEcCCCceeeccCc---ccHHHHHHHH
Confidence 45999999988888764 3 5678888899999999999 9999999 899988333344432 2234444444
Q ss_pred HhcCcccccCCCCCCCCCCcccchhHHHHHHHHhc-CCCEEEEEecCCCCCCCcchHHHHHHhhc--------CCCCeEE
Q 020081 100 RDHGIETVGGSGKSGISESTGLSATLTSRLESLIN-SSPVMLFMKGKPEEPKCGFSGKVVEILKQ--------GKVDFGS 170 (331)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vvvf~~~~~~~~~C~~C~~~~~~l~~--------~~i~~~~ 170 (331)
......+... ....++.......+.+.+. .....+..++ +|||++|+.+.+.+.+ ..+.+..
T Consensus 131 ~~~~~~~~~~------~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~---aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~ 201 (383)
T KOG0191|consen 131 IKELEPSVKK------LVEGEVFELTKDNFDETVKDSDADWLVEFY---APWCGHCKKLAPEWEKLAKLLKSKENVELGK 201 (383)
T ss_pred HHhhcccccc------ccCCceEEccccchhhhhhccCcceEEEEe---ccccHHhhhcChHHHHHHHHhccCcceEEEe
Confidence 4332111110 0001244555566666543 2333333343 3789999987665544 2333444
Q ss_pred EecCCCHHHHHHHHhhcCCCCccee--eecCcc
Q 020081 171 FDILTDEEVRQGLKVYSNWSSYPQL--YIKGEL 201 (331)
Q Consensus 171 ~di~~~~~~~~~l~~~~~~~~vP~i--fi~G~~ 201 (331)
+|......+. ...++..+|++ |-+|..
T Consensus 202 ~d~~~~~~~~----~~~~v~~~Pt~~~f~~~~~ 230 (383)
T KOG0191|consen 202 IDATVHKSLA----SRLEVRGYPTLKLFPPGEE 230 (383)
T ss_pred eccchHHHHh----hhhcccCCceEEEecCCCc
Confidence 4544223333 44499999999 445544
No 137
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.56 E-value=2.7e-07 Score=67.94 Aligned_cols=56 Identities=16% Similarity=0.398 Sum_probs=41.6
Q ss_pred CEEEEEecCCCCCCChhHHHHHHHHHhC----C--CCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEE
Q 020081 15 PVMLFMKGTPEEPKCGFSRQVVDILKDE----K--VEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGEL 79 (331)
Q Consensus 15 ~vvvf~~~~~~~~~C~~C~~~~~~l~~~----~--i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~ 79 (331)
.|.+|+. +||++|+.+++.|+++ + +.+..+|+++++++.+.+ |..++|.++++|+.
T Consensus 2 ~v~~f~~-----~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~----~v~~vPt~~~~g~~ 63 (82)
T TIGR00411 2 KIELFTS-----PTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEY----GIMAVPAIVINGDV 63 (82)
T ss_pred EEEEEEC-----CCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHc----CCccCCEEEECCEE
Confidence 3566664 4999999999998762 3 678899998888776654 45556777779873
No 138
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.54 E-value=5.1e-07 Score=64.77 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=54.1
Q ss_pred EEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEEC-CeEEeeHHHHHHHHH
Q 020081 247 MLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHK-GELIGGCDIVMELKD 321 (331)
Q Consensus 247 ~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~-g~~igg~~~~~~~~~ 321 (331)
.+|. .++||+|.+++-+|..+|++|+.+.+...... ...+..+..++|+++++ |..+++...+.++.+
T Consensus 2 ~Ly~-----~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~--~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~ 70 (71)
T cd03037 2 KLYI-----YEHCPFCVKARMIAGLKNIPVEQIILQNDDEA--TPIRMIGAKQVPILEKDDGSFMAESLDIVAFID 70 (71)
T ss_pred ceEe-----cCCCcHhHHHHHHHHHcCCCeEEEECCCCchH--HHHHhcCCCccCEEEeCCCeEeehHHHHHHHHh
Confidence 3566 46899999999999999999999988754322 22345677899999987 899999988887654
No 139
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.53 E-value=2.7e-07 Score=79.61 Aligned_cols=59 Identities=14% Similarity=0.113 Sum_probs=47.1
Q ss_pred CCCCChhHHHHHHHHHhC-----CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechhhHHh
Q 020081 25 EEPKCGFSRQVVDILKDE-----KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIA 88 (331)
Q Consensus 25 ~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~~ 88 (331)
|++||++|+.+.+.|+.+ .+.|..+|++.. ...+. +.+.||+ .+|.||+.++.+.++..
T Consensus 110 ya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~-i~~lPTl-liyk~G~~v~~ivG~~~ 173 (192)
T cd02988 110 YKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYP-DKNLPTI-LVYRNGDIVKQFIGLLE 173 (192)
T ss_pred ECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCC-CCCCCEE-EEEECCEEEEEEeCchh
Confidence 456999999999999885 578999998643 34566 8899999 99999998876665544
No 140
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.52 E-value=3.5e-07 Score=72.19 Aligned_cols=70 Identities=11% Similarity=0.081 Sum_probs=52.9
Q ss_pred HHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc-----CCCCeEEEecCCCHHHHHHHHhhcCCCCccee--eecC
Q 020081 127 SRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ-----GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL--YIKG 199 (331)
Q Consensus 127 ~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-----~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i--fi~G 199 (331)
+.+.+.+++.+.++..++ ++||+.|+.+.+.|.+ .++.|..+|++++++++ +++ ++.++|++ |.+|
T Consensus 13 ~~~~~~i~~~~~vvV~f~---a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~---~~~-~v~~vPt~l~fk~G 85 (113)
T cd02989 13 KEFFEIVKSSERVVCHFY---HPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLV---EKL-NIKVLPTVILFKNG 85 (113)
T ss_pred HHHHHHHhCCCcEEEEEE---CCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHH---HHC-CCccCCEEEEEECC
Confidence 456666665555555553 4789999999888865 36789999999988877 444 99999999 6689
Q ss_pred cccc
Q 020081 200 ELIG 203 (331)
Q Consensus 200 ~~vg 203 (331)
+.++
T Consensus 86 ~~v~ 89 (113)
T cd02989 86 KTVD 89 (113)
T ss_pred EEEE
Confidence 7764
No 141
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.52 E-value=2.3e-07 Score=73.08 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=54.8
Q ss_pred chhHHHHHHHH---hcCCCEEEEEecCCCCCCCcchHHHHHHhhcC------CCCeEEEecCCCHHHHHHHHhhcCCCCc
Q 020081 122 SATLTSRLESL---INSSPVMLFMKGKPEEPKCGFSGKVVEILKQG------KVDFGSFDILTDEEVRQGLKVYSNWSSY 192 (331)
Q Consensus 122 ~~~~~~~~~~~---~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~------~i~~~~~di~~~~~~~~~l~~~~~~~~v 192 (331)
.+..++.++++ ++.++++|..++ +|||++|+.+.+.+++. .+.+..+|++.++++. .+.+++.++
T Consensus 12 ~~l~~~~f~~~~~v~~~~~~vlV~Fy---A~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~---~~~~~I~~~ 85 (113)
T cd03006 12 LDFYKGQLDYAEELRTDAEVSLVMYY---APWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKC---RKQKHFFYF 85 (113)
T ss_pred EEechhhhHHHHhcccCCCEEEEEEE---CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHH---HHhcCCccc
Confidence 34455566654 678888888884 57899999998888752 3678889998877654 333499999
Q ss_pred cee--eecCcc
Q 020081 193 PQL--YIKGEL 201 (331)
Q Consensus 193 P~i--fi~G~~ 201 (331)
||+ |.+|+.
T Consensus 86 PTl~lf~~g~~ 96 (113)
T cd03006 86 PVIHLYYRSRG 96 (113)
T ss_pred CEEEEEECCcc
Confidence 999 667653
No 142
>PTZ00102 disulphide isomerase; Provisional
Probab=98.52 E-value=5.8e-07 Score=88.41 Aligned_cols=173 Identities=14% Similarity=0.220 Sum_probs=95.2
Q ss_pred HHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC------CCCeEEEEecCCHH-HHHHHhhhhCCCcccEEEE-CCEE
Q 020081 8 QQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE------KVEFGSFNILSDNE-VREGLKKFSNWPTFPQLYC-KGEL 79 (331)
Q Consensus 8 ~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~-~~~~~~~~~~~~t~P~ifi-~g~~ 79 (331)
..+..+...++|..+ .+.....+++.+.+. .+.|..+|.+..+. +.+.++ +++.|++ .+.. +|++
T Consensus 243 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~~~~~~~~g-i~~~P~~-~i~~~~~~y 315 (477)
T PTZ00102 243 RRYISSGKDLVWFCG-----TTEDYDKYKSVVRKVARKLREKYAFVWLDTEQFGSHAKEHLL-IEEFPGL-AYQSPAGRY 315 (477)
T ss_pred HHHhcCCccEEEEec-----CHHHHHHHHHHHHHHHHhccCceEEEEEechhcchhHHHhcC-cccCceE-EEEcCCccc
Confidence 345555554454433 345555555555542 35688888876654 555565 5555544 2222 3444
Q ss_pred eechhhHHhhhcccchHHHHHhcCc---ccccCCCCCCCCCCcccchhHHHHHHHH-hcCCCEEEEEecCCCCCCCcchH
Q 020081 80 LGGCDIVIAMHKSGELKDVFRDHGI---ETVGGSGKSGISESTGLSATLTSRLESL-INSSPVMLFMKGKPEEPKCGFSG 155 (331)
Q Consensus 80 vgg~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvvf~~~~~~~~~C~~C~ 155 (331)
+-.... ..+...+.|.+.+.+... .+...|...+......+..-..+.+++. .+..+.++..+ |++||++|+
T Consensus 316 ~~~~~~-~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f---~a~wC~~C~ 391 (477)
T PTZ00102 316 LLPPAK-ESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEI---YAPWCGHCK 391 (477)
T ss_pred CCCccc-cccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHhcCCCCEEEEE---ECCCCHHHH
Confidence 311110 012345667777776532 2222333222222223334445667766 45555555555 458999999
Q ss_pred HHHHHhhcC--------CCCeEEEecCCCHHHHHHHHhhcCCCCccee
Q 020081 156 KVVEILKQG--------KVDFGSFDILTDEEVRQGLKVYSNWSSYPQL 195 (331)
Q Consensus 156 ~~~~~l~~~--------~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i 195 (331)
.+.+.|++. .+.+..+|.+.++... ..+ +++++|++
T Consensus 392 ~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~---~~~-~v~~~Pt~ 435 (477)
T PTZ00102 392 NLEPVYNELGEKYKDNDSIIVAKMNGTANETPL---EEF-SWSAFPTI 435 (477)
T ss_pred HHHHHHHHHHHHhccCCcEEEEEEECCCCccch---hcC-CCcccCeE
Confidence 998888652 3457778888776554 233 89999999
No 143
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.51 E-value=3e-07 Score=70.74 Aligned_cols=70 Identities=17% Similarity=0.351 Sum_probs=52.3
Q ss_pred HHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc------CCCCeEEEecCCCHHHHHHHHhhcCCCCccee--ee
Q 020081 126 TSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ------GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL--YI 197 (331)
Q Consensus 126 ~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~------~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i--fi 197 (331)
.+.+++.+++.++++..+ |++||++|+.+.+.+.+ ..+.+..+|+++++.+. +++ ++.++|++ |.
T Consensus 8 ~~~f~~~v~~~~~~~v~f---~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~---~~~-~v~~~Pt~~~~~ 80 (101)
T cd03003 8 RGDFDAAVNSGEIWFVNF---YSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLC---RSQ-GVNSYPSLYVFP 80 (101)
T ss_pred HhhHHHHhcCCCeEEEEE---ECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHH---HHc-CCCccCEEEEEc
Confidence 446777777777777777 45789999999888865 24568889998887765 333 99999999 55
Q ss_pred cCccc
Q 020081 198 KGELI 202 (331)
Q Consensus 198 ~G~~v 202 (331)
+|+.+
T Consensus 81 ~g~~~ 85 (101)
T cd03003 81 SGMNP 85 (101)
T ss_pred CCCCc
Confidence 77644
No 144
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.50 E-value=2.2e-07 Score=73.82 Aligned_cols=76 Identities=14% Similarity=0.254 Sum_probs=52.2
Q ss_pred HHHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC------CCCeEEEEecCCH-HHHHHHhhhhC--CCcccEE
Q 020081 3 LKSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE------KVEFGSFNILSDN-EVREGLKKFSN--WPTFPQL 73 (331)
Q Consensus 3 ~~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~-~~~~~~~~~~~--~~t~P~i 73 (331)
..+.++....+++.|+..+ +++||++|+.+.+.+.+. +..|..+|++.++ .....++ +.| .||+ .+
T Consensus 8 ~~~al~~A~~~~kpVlV~F---~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~-~~g~~vPt~-~f 82 (117)
T cd02959 8 LEDGIKEAKDSGKPLMLLI---HKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFS-PDGGYIPRI-LF 82 (117)
T ss_pred HHHHHHHHHHcCCcEEEEE---eCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcc-cCCCccceE-EE
Confidence 4566777777776444444 356999999999888873 4578889998774 3345555 554 8888 55
Q ss_pred EE-CCEEeech
Q 020081 74 YC-KGELLGGC 83 (331)
Q Consensus 74 fi-~g~~vgg~ 83 (331)
|- +|+.++.+
T Consensus 83 ~~~~Gk~~~~~ 93 (117)
T cd02959 83 LDPSGDVHPEI 93 (117)
T ss_pred ECCCCCCchhh
Confidence 53 78876643
No 145
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.50 E-value=4.1e-07 Score=72.78 Aligned_cols=76 Identities=13% Similarity=0.222 Sum_probs=49.9
Q ss_pred HHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc----CCCCeEEEecCCCH--------HHHHHHHhh---cCCC
Q 020081 126 TSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ----GKVDFGSFDILTDE--------EVRQGLKVY---SNWS 190 (331)
Q Consensus 126 ~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~----~~i~~~~~di~~~~--------~~~~~l~~~---~~~~ 190 (331)
.+.+.+.+++.+.+++.++ ++|||||+.+.+.|++ .++++..+|++.+. ++.+.+..+ +++.
T Consensus 13 ~~~~~~~i~~~~~~iv~f~---~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~ 89 (122)
T TIGR01295 13 VVRALEALDKKETATFFIG---RKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFM 89 (122)
T ss_pred HHHHHHHHHcCCcEEEEEE---CCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCC
Confidence 3456666665554333343 3799999998888865 56778889988543 334444333 2456
Q ss_pred Cccee--eecCccccc
Q 020081 191 SYPQL--YIKGELIGG 204 (331)
Q Consensus 191 ~vP~i--fi~G~~vgg 204 (331)
++|++ |.||+.++.
T Consensus 90 ~~PT~v~~k~Gk~v~~ 105 (122)
T TIGR01295 90 GTPTFVHITDGKQVSV 105 (122)
T ss_pred CCCEEEEEeCCeEEEE
Confidence 69999 668988754
No 146
>PHA02125 thioredoxin-like protein
Probab=98.50 E-value=1.5e-07 Score=68.49 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=40.5
Q ss_pred EEEEEecCCCCCCCcchHHHHHHhhcCCCCeEEEecCCCHHHHHHHHhhcCCCCcceeeecCccc
Q 020081 138 VMLFMKGKPEEPKCGFSGKVVEILKQGKVDFGSFDILTDEEVRQGLKVYSNWSSYPQLYIKGELI 202 (331)
Q Consensus 138 vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~ifi~G~~v 202 (331)
|++|+. +||++|+.++++|++..+.+..+|.+.+++++ +++ ++.++|++. +|+.+
T Consensus 2 iv~f~a-----~wC~~Ck~~~~~l~~~~~~~~~vd~~~~~~l~---~~~-~v~~~PT~~-~g~~~ 56 (75)
T PHA02125 2 IYLFGA-----EWCANCKMVKPMLANVEYTYVDVDTDEGVELT---AKH-HIRSLPTLV-NTSTL 56 (75)
T ss_pred EEEEEC-----CCCHhHHHHHHHHHHHhheEEeeeCCCCHHHH---HHc-CCceeCeEE-CCEEE
Confidence 455554 69999999999998766666666766666555 444 999999986 67654
No 147
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.49 E-value=3.9e-07 Score=70.44 Aligned_cols=70 Identities=21% Similarity=0.311 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc----C---CCCeEEEecCCCHHHHHHHHhhcCCCCccee--
Q 020081 125 LTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ----G---KVDFGSFDILTDEEVRQGLKVYSNWSSYPQL-- 195 (331)
Q Consensus 125 ~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~----~---~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i-- 195 (331)
..+.+++++++++.++..+ |++||++|+.+.+.|.. . .+.|..+|++ ++++. +++ ++.++|++
T Consensus 6 ~~~~~~~~i~~~~~vvv~F---~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~---~~~-~v~~~Pt~~~ 77 (102)
T cd02948 6 NQEEWEELLSNKGLTVVDV---YQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTL---KRY-RGKCEPTFLF 77 (102)
T ss_pred CHHHHHHHHccCCeEEEEE---ECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHH---HHc-CCCcCcEEEE
Confidence 3556777888888887777 46899999998888864 2 2457788887 54444 444 99999998
Q ss_pred eecCccc
Q 020081 196 YIKGELI 202 (331)
Q Consensus 196 fi~G~~v 202 (331)
|-+|+.+
T Consensus 78 ~~~g~~~ 84 (102)
T cd02948 78 YKNGELV 84 (102)
T ss_pred EECCEEE
Confidence 5578765
No 148
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.48 E-value=2.9e-07 Score=71.85 Aligned_cols=79 Identities=9% Similarity=0.123 Sum_probs=56.1
Q ss_pred cchhHHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc----C--CCCeEEEecCCCHHHHHHHHhhcCCCCcce
Q 020081 121 LSATLTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ----G--KVDFGSFDILTDEEVRQGLKVYSNWSSYPQ 194 (331)
Q Consensus 121 ~~~~~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~----~--~i~~~~~di~~~~~~~~~l~~~~~~~~vP~ 194 (331)
+++...+.|++.+....++|+.+++.| .+||.|+.+.++|.+ + .+.|..+|++++++++ .++ ++.++||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~f~~~~-~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la---~~f-~V~sIPT 86 (111)
T cd02965 12 WPRVDAATLDDWLAAGGDLVLLLAGDP-VRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALA---ARF-GVLRTPA 86 (111)
T ss_pred CcccccccHHHHHhCCCCEEEEecCCc-ccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHH---HHc-CCCcCCE
Confidence 334455567777776555665564332 259999999998875 2 3567889999888776 333 9999999
Q ss_pred e--eecCccccc
Q 020081 195 L--YIKGELIGG 204 (331)
Q Consensus 195 i--fi~G~~vgg 204 (331)
+ |-||+.++.
T Consensus 87 li~fkdGk~v~~ 98 (111)
T cd02965 87 LLFFRDGRYVGV 98 (111)
T ss_pred EEEEECCEEEEE
Confidence 9 668988754
No 149
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.48 E-value=2.1e-07 Score=71.15 Aligned_cols=64 Identities=27% Similarity=0.465 Sum_probs=47.7
Q ss_pred HhcCCCEEEEEecCCCCCCCcchHHHHHHhhc------CCCCeEEEecCCCHHHHHHHHhhcCCCCccee--eecCccc
Q 020081 132 LINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ------GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL--YIKGELI 202 (331)
Q Consensus 132 ~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~------~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i--fi~G~~v 202 (331)
+.+++++++..++ ++||++|+.+.+.+++ .++.+..+|+++++++. .++ ++.++|++ |-+|+.+
T Consensus 9 ~~~~~~~vlv~f~---a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~---~~~-~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 9 YHESDRLILVLYT---SPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIA---EAA-GIMGTPTVQFFKDKELV 80 (97)
T ss_pred HHhCCCeEEEEEE---CCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHH---HHC-CCeeccEEEEEECCeEE
Confidence 4456666666663 4789999999888865 35778899998888776 333 99999999 4467665
No 150
>PRK10996 thioredoxin 2; Provisional
Probab=98.47 E-value=3.7e-07 Score=74.78 Aligned_cols=71 Identities=20% Similarity=0.391 Sum_probs=53.2
Q ss_pred HHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc------CCCCeEEEecCCCHHHHHHHHhhcCCCCccee--e
Q 020081 125 LTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ------GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL--Y 196 (331)
Q Consensus 125 ~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~------~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i--f 196 (331)
..+.++++++..+.++..+ |++||++|+.+.+.|++ .++.+..+|+++++++. +++ ++.++|++ |
T Consensus 41 ~~~~~~~~i~~~k~vvv~F---~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~---~~~-~V~~~Ptlii~ 113 (139)
T PRK10996 41 TGETLDKLLQDDLPVVIDF---WAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELS---ARF-RIRSIPTIMIF 113 (139)
T ss_pred CHHHHHHHHhCCCeEEEEE---ECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHH---Hhc-CCCccCEEEEE
Confidence 4566777887777777777 35789999998887765 25667888998888766 343 99999999 4
Q ss_pred ecCccc
Q 020081 197 IKGELI 202 (331)
Q Consensus 197 i~G~~v 202 (331)
.+|+.+
T Consensus 114 ~~G~~v 119 (139)
T PRK10996 114 KNGQVV 119 (139)
T ss_pred ECCEEE
Confidence 577765
No 151
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.47 E-value=3.3e-07 Score=72.66 Aligned_cols=75 Identities=16% Similarity=0.230 Sum_probs=54.0
Q ss_pred HHHHHHHhhC--C-CEEEEEecCCCC-------CCChhHHHHHHHHHhC------CCCeEEEEecCC-------HHHHHH
Q 020081 4 KSRLQQLLDS--H-PVMLFMKGTPEE-------PKCGFSRQVVDILKDE------KVEFGSFNILSD-------NEVREG 60 (331)
Q Consensus 4 ~~~~~~~i~~--~-~vvvf~~~~~~~-------~~C~~C~~~~~~l~~~------~i~~~~vdi~~~-------~~~~~~ 60 (331)
.+.|.+.+.. . +|+|+. +| +|||+|+++.+.|++. ++.|..+|++.. .+++..
T Consensus 9 ~~~f~~~i~~~~~~~vvV~F----~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~ 84 (119)
T cd02952 9 YEEFLKLLKSHEGKPIFILF----YGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTD 84 (119)
T ss_pred HHHHHHHHHhcCCCeEEEEE----EccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhc
Confidence 3456666764 2 344433 24 6999999999888773 478999999763 577777
Q ss_pred Hhhhh-CCCcccEEEECCEEeechh
Q 020081 61 LKKFS-NWPTFPQLYCKGELLGGCD 84 (331)
Q Consensus 61 ~~~~~-~~~t~P~ifi~g~~vgg~~ 84 (331)
+. +. ++||+ ++|.+|+.+-+-+
T Consensus 85 ~~-I~~~iPT~-~~~~~~~~l~~~~ 107 (119)
T cd02952 85 PK-LTTGVPTL-LRWKTPQRLVEDE 107 (119)
T ss_pred cC-cccCCCEE-EEEcCCceecchh
Confidence 77 77 99999 8998887765544
No 152
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1.2e-06 Score=84.55 Aligned_cols=172 Identities=16% Similarity=0.255 Sum_probs=104.9
Q ss_pred CCcccchhHHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHH-------HhhcC--CCCeEEEecCCCHHHHHHHHhhc
Q 020081 117 ESTGLSATLTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVE-------ILKQG--KVDFGSFDILTDEEVRQGLKVYS 187 (331)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~-------~l~~~--~i~~~~~di~~~~~~~~~l~~~~ 187 (331)
+...+...+++.++++++.|..+++.+++ |||++|+++.+ .|.+. .+....||..++.++. .++
T Consensus 23 ~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYA---PWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~---~~y- 95 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETINGHEFVLVEFYA---PWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLA---SKY- 95 (493)
T ss_pred cccceEEEecccHHHHhccCceEEEEEEc---hhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhH---hhh-
Confidence 45566677888999999999999999964 68999986544 44444 7778999988775555 444
Q ss_pred CCCCccee--eecCccccchhhHHHHhhcchhHHHHhh-hccchhhhhHHHHHHHHhhcCCEEEE--ecCCCCCCCCcch
Q 020081 188 NWSSYPQL--YIKGELIGGSDIVLEMQKSGELKKVLAE-KGITVEKENLEDRLKNLITSSPVMLF--MKGNPDSPRCGFS 262 (331)
Q Consensus 188 ~~~~vP~i--fi~G~~vgg~d~~~~~~~~g~L~~~l~~-~~~~~~~~~~~~~~~~~~~~~~v~vy--~k~~p~~~~Cp~C 262 (331)
+++++||+ |.||.... +....+....|..++.+ .|..+..-...+.++..+.+..++|. =+. ..- .-
T Consensus 96 ~v~gyPTlkiFrnG~~~~---~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d----~~~-~~ 167 (493)
T KOG0190|consen 96 EVRGYPTLKIFRNGRSAQ---DYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKD----LES-LA 167 (493)
T ss_pred cCCCCCeEEEEecCCcce---eccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecc----ccc-ch
Confidence 99999999 78997521 11111333445555554 55554445566777777777665553 221 111 11
Q ss_pred HHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEE
Q 020081 263 SKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYH 305 (331)
Q Consensus 263 ~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi 305 (331)
..-........=+|.+. ++.+.+....+.-.... ++|.++.
T Consensus 168 ~~~~~~a~~l~~d~~F~-~ts~~~~~~~~~~~~~~-~~~i~l~ 208 (493)
T KOG0190|consen 168 ESFFDAASKLRDDYKFA-HTSDSDVAKKLELNTEG-TFPIVLF 208 (493)
T ss_pred HHHHHHHHhccccceee-ccCcHhHHhhccCCCCC-cceEEec
Confidence 22222233333455555 66677766655443322 5555544
No 153
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.44 E-value=7.4e-07 Score=70.19 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=49.7
Q ss_pred HHHHHHhcCC---CEEEEEecCCCCCCCcchHHHHHHhhc-----CCCCeEEEecCCCHHHHHHHHhhcCCCCccee--e
Q 020081 127 SRLESLINSS---PVMLFMKGKPEEPKCGFSGKVVEILKQ-----GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL--Y 196 (331)
Q Consensus 127 ~~~~~~~~~~---~vvvf~~~~~~~~~C~~C~~~~~~l~~-----~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i--f 196 (331)
+.+.+.+... +.+|..+ |+|||++|+.+.+.|++ .++.|..+|++++ ++. .+ +++.++|++ |
T Consensus 12 ~~f~~~i~~~~~~~~vvv~F---~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~---~~-~~i~~~Pt~~~f 83 (113)
T cd02957 12 KEFLEEVTKASKGTRVVVHF---YEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLV---NY-LDIKVLPTLLVY 83 (113)
T ss_pred HHHHHHHHccCCCCEEEEEE---eCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHH---Hh-cCCCcCCEEEEE
Confidence 4455555433 5555556 35799999999888865 3677888998766 444 33 399999999 7
Q ss_pred ecCccccc
Q 020081 197 IKGELIGG 204 (331)
Q Consensus 197 i~G~~vgg 204 (331)
.+|+.++.
T Consensus 84 ~~G~~v~~ 91 (113)
T cd02957 84 KNGELIDN 91 (113)
T ss_pred ECCEEEEE
Confidence 78988753
No 154
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.43 E-value=5.5e-07 Score=69.67 Aligned_cols=65 Identities=9% Similarity=-0.050 Sum_probs=44.5
Q ss_pred HHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhh------c---CCCCeEEEecCCCHHHHHHHHhhcCCCCccee
Q 020081 128 RLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILK------Q---GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL 195 (331)
Q Consensus 128 ~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~------~---~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i 195 (331)
.+++.++.++.+|..++ ++||++|+.+.+.+. + .++.+..+|+..++.....+.+.+++.++|++
T Consensus 3 ~~~~~~~~~k~vlv~f~---a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti 76 (104)
T cd02953 3 ALAQALAQGKPVFVDFT---ADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTY 76 (104)
T ss_pred HHHHHHHcCCeEEEEEE---cchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEE
Confidence 46667777777776773 478999998876541 1 15677788887654333333344499999999
No 155
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.41 E-value=3e-07 Score=70.40 Aligned_cols=70 Identities=23% Similarity=0.362 Sum_probs=51.4
Q ss_pred HHHHHHhcC-CCEEEEEecCCCCCCCcchHHHHHHhhc------CCCCeEEEecCCCHHHHHHHHhhcCCCCccee--ee
Q 020081 127 SRLESLINS-SPVMLFMKGKPEEPKCGFSGKVVEILKQ------GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL--YI 197 (331)
Q Consensus 127 ~~~~~~~~~-~~vvvf~~~~~~~~~C~~C~~~~~~l~~------~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i--fi 197 (331)
+.+++.+.+ ++.+|..++ ++||++|+.+.+.|.+ .++.|..+|+.+++.+. +++ ++.++|++ |.
T Consensus 7 ~~f~~~i~~~~~~vvv~f~---~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~---~~~-~v~~~Pt~~~~~ 79 (103)
T PF00085_consen 7 ENFEKFINESDKPVVVYFY---APWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELC---KKY-GVKSVPTIIFFK 79 (103)
T ss_dssp TTHHHHHTTTSSEEEEEEE---STTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHH---HHT-TCSSSSEEEEEE
T ss_pred HHHHHHHHccCCCEEEEEe---CCCCCccccccceecccccccccccccchhhhhccchhh---hcc-CCCCCCEEEEEE
Confidence 346666664 666666664 3689999999888864 26888999998887666 444 99999999 55
Q ss_pred cCcccc
Q 020081 198 KGELIG 203 (331)
Q Consensus 198 ~G~~vg 203 (331)
+|+.+.
T Consensus 80 ~g~~~~ 85 (103)
T PF00085_consen 80 NGKEVK 85 (103)
T ss_dssp TTEEEE
T ss_pred CCcEEE
Confidence 776663
No 156
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.41 E-value=5.4e-07 Score=69.23 Aligned_cols=67 Identities=15% Similarity=0.319 Sum_probs=51.8
Q ss_pred HHHHHHhhC-CC-EEEEEecCCCCCCChhHHHHHHHHHhC------CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEEC
Q 020081 5 SRLQQLLDS-HP-VMLFMKGTPEEPKCGFSRQVVDILKDE------KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCK 76 (331)
Q Consensus 5 ~~~~~~i~~-~~-vvvf~~~~~~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~ 76 (331)
+.+++.+.+ .+ ++|+. |++||++|+++.+.|.+. .+.+..+|.++++++.+.++ +.+.||+ .+|.+
T Consensus 8 ~~~~~~i~~~~~~vlv~f----~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~-i~~~P~~-~~~~~ 81 (103)
T cd03001 8 SNFDKKVLNSDDVWLVEF----YAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYG-VRGFPTI-KVFGA 81 (103)
T ss_pred HhHHHHHhcCCCcEEEEE----ECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCC-CCccCEE-EEECC
Confidence 567777654 34 44444 356999999999888773 46788999999999988887 8899998 88888
Q ss_pred C
Q 020081 77 G 77 (331)
Q Consensus 77 g 77 (331)
|
T Consensus 82 ~ 82 (103)
T cd03001 82 G 82 (103)
T ss_pred C
Confidence 8
No 157
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.40 E-value=5.9e-07 Score=70.03 Aligned_cols=68 Identities=22% Similarity=0.426 Sum_probs=51.4
Q ss_pred HHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc--------C----CCCeEEEecCCCHHHHHHHHhhcCCCCcc
Q 020081 126 TSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ--------G----KVDFGSFDILTDEEVRQGLKVYSNWSSYP 193 (331)
Q Consensus 126 ~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~--------~----~i~~~~~di~~~~~~~~~l~~~~~~~~vP 193 (331)
.+.++++++.++.++..++ ++||++|+.+.+.+++ . .+.+..+|++.++++. +++ |+.++|
T Consensus 8 ~~~f~~~i~~~~~vlv~F~---a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~---~~~-~v~~~P 80 (108)
T cd02996 8 SGNIDDILQSAELVLVNFY---ADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIA---DRY-RINKYP 80 (108)
T ss_pred HhhHHHHHhcCCEEEEEEE---CCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHH---HhC-CCCcCC
Confidence 4567778888887777774 5789999999888753 1 3677889998887765 344 999999
Q ss_pred ee--eecCc
Q 020081 194 QL--YIKGE 200 (331)
Q Consensus 194 ~i--fi~G~ 200 (331)
++ |-+|+
T Consensus 81 tl~~~~~g~ 89 (108)
T cd02996 81 TLKLFRNGM 89 (108)
T ss_pred EEEEEeCCc
Confidence 99 55676
No 158
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.40 E-value=7.9e-07 Score=69.85 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=44.8
Q ss_pred CCCEEEEEecCCCCCCCcchHHHHHHhhc-------CCCCeEEEecCCCHHHHHHHHhhcCCCCccee--eecCccc
Q 020081 135 SSPVMLFMKGKPEEPKCGFSGKVVEILKQ-------GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL--YIKGELI 202 (331)
Q Consensus 135 ~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i--fi~G~~v 202 (331)
.+++++..+ |++||++|+.+.+.+.+ .++.+..+|++.++.+. .++ |+.++|++ |.+|+.+
T Consensus 23 ~~~~vlV~F---~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~---~~~-~V~~~Pt~~i~~~g~~~ 92 (111)
T cd02963 23 FKKPYLIKI---TSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLA---RKL-GAHSVPAIVGIINGQVT 92 (111)
T ss_pred CCCeEEEEE---ECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHH---HHc-CCccCCEEEEEECCEEE
Confidence 455566556 45899999988777653 25778899998887766 333 99999999 5577655
No 159
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.40 E-value=2.4e-07 Score=72.89 Aligned_cols=47 Identities=23% Similarity=0.488 Sum_probs=39.7
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCC
Q 020081 246 VMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNW 297 (331)
Q Consensus 246 v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~ 297 (331)
|+||+ .|+||+|++|+++|+++|++|+++|+..++..+++|.++.+.
T Consensus 1 i~iY~-----~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~ 47 (111)
T cd03036 1 LKFYE-----YPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEK 47 (111)
T ss_pred CEEEE-----CCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHH
Confidence 57899 569999999999999999999999998877667667665543
No 160
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.39 E-value=4.4e-07 Score=69.04 Aligned_cols=60 Identities=10% Similarity=0.259 Sum_probs=43.8
Q ss_pred CCEEEEEecCCCCCCCcchHHHHHHhhc------CCCCeEEEecCCCHHHHHHHHhhcCCCCccee--eecCccc
Q 020081 136 SPVMLFMKGKPEEPKCGFSGKVVEILKQ------GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL--YIKGELI 202 (331)
Q Consensus 136 ~~vvvf~~~~~~~~~C~~C~~~~~~l~~------~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i--fi~G~~v 202 (331)
.+++|..+ |++||++|+.+.+.|++ ..+.+..+|++.++++. .++ ++.++|++ |-+|+.+
T Consensus 12 ~~~vlv~f---~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~---~~~-~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 12 QVPVVVDF---WAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIA---QQF-GVQALPTVYLFAAGQPV 79 (96)
T ss_pred CCeEEEEE---ECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHH---HHc-CCCCCCEEEEEeCCEEe
Confidence 44666556 45899999999888865 23557788998888776 333 99999999 4467654
No 161
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.38 E-value=1.1e-06 Score=72.78 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=52.0
Q ss_pred HHHHHHHHhc--CCCEEEEEecCCCCCCCcchHHHHHHhhc-------CCCCeEEEecCCCHHHHHHHHhhcCCCC----
Q 020081 125 LTSRLESLIN--SSPVMLFMKGKPEEPKCGFSGKVVEILKQ-------GKVDFGSFDILTDEEVRQGLKVYSNWSS---- 191 (331)
Q Consensus 125 ~~~~~~~~~~--~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~~i~~~~~di~~~~~~~~~l~~~~~~~~---- 191 (331)
..+.+++.+. ..+.+|..+ |++||++|+.+.+.|++ .++.|..+|+++++++.+.+ ++.+
T Consensus 34 ~~~~f~~~l~~~~~~~vvV~F---ya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~----~V~~~~~v 106 (152)
T cd02962 34 TPKTLEEELERDKRVTWLVEF---FTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKF----RVSTSPLS 106 (152)
T ss_pred CHHHHHHHHHhcCCCEEEEEE---ECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHc----CceecCCc
Confidence 3456777663 345566666 35799999999888754 24778999999988877443 6666
Q ss_pred --ccee--eecCcccc
Q 020081 192 --YPQL--YIKGELIG 203 (331)
Q Consensus 192 --vP~i--fi~G~~vg 203 (331)
+||+ |.+|+.++
T Consensus 107 ~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 107 KQLPTIILFQGGKEVA 122 (152)
T ss_pred CCCCEEEEEECCEEEE
Confidence 9999 77888774
No 162
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.38 E-value=1.2e-06 Score=68.34 Aligned_cols=61 Identities=15% Similarity=0.230 Sum_probs=50.0
Q ss_pred CCCEEEEEecCCCCCCCcchHHHHHHhhcC-----C-CCeEEEecCCCHHHHHHHHhhcCCCCccee--eecCccc
Q 020081 135 SSPVMLFMKGKPEEPKCGFSGKVVEILKQG-----K-VDFGSFDILTDEEVRQGLKVYSNWSSYPQL--YIKGELI 202 (331)
Q Consensus 135 ~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~-i~~~~~di~~~~~~~~~l~~~~~~~~vP~i--fi~G~~v 202 (331)
..+++|..|+ ++|||+|+.+.++|.++ + +.|..+|+++.+++. +.+ ++...|++ |.||+++
T Consensus 13 ~~klVVVdF~---a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva---~~y-~I~amPtfvffkngkh~ 81 (114)
T cd02986 13 AEKVLVLRFG---RDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYT---QYF-DISYIPSTIFFFNGQHM 81 (114)
T ss_pred CCCEEEEEEe---CCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHH---Hhc-CceeCcEEEEEECCcEE
Confidence 5888888884 57899999999988763 3 668889999988888 333 99999998 6689888
No 163
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.37 E-value=1.4e-06 Score=63.51 Aligned_cols=55 Identities=16% Similarity=0.246 Sum_probs=42.6
Q ss_pred CEEEEecCCCCCCCCcchHHH----HHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEE
Q 020081 245 PVMLFMKGNPDSPRCGFSSKV----VNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELI 310 (331)
Q Consensus 245 ~v~vy~k~~p~~~~Cp~C~~a----~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~i 310 (331)
.|.+|+ +|||+|+.+ .+++++++++++.++|+...+ ...+|..++|++++||+.+
T Consensus 2 ~i~~~a------~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~-----a~~~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 2 KIQIYG------TGCANCQMTEKNVKKAVEELGIDAEFEKVTDMNE-----ILEAGVTATPGVAVDGELV 60 (76)
T ss_pred EEEEEC------CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHH-----HHHcCCCcCCEEEECCEEE
Confidence 366777 599999999 557788899999999973222 2336999999999999644
No 164
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.35 E-value=8e-07 Score=67.31 Aligned_cols=76 Identities=16% Similarity=0.307 Sum_probs=56.0
Q ss_pred HHHHHHHhhCC-CEEEEEecCCCCCCChhHHHHHHHHHh----C----CCCeEEEEecCCHHHHHHHhhhhCCCcccEEE
Q 020081 4 KSRLQQLLDSH-PVMLFMKGTPEEPKCGFSRQVVDILKD----E----KVEFGSFNILSDNEVREGLKKFSNWPTFPQLY 74 (331)
Q Consensus 4 ~~~~~~~i~~~-~vvvf~~~~~~~~~C~~C~~~~~~l~~----~----~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~if 74 (331)
.+.+.+++.+. .++|+. |++||++|+.+.+.+.+ . ++.|..+|.+.++.+.+.++ +.+.||+ .+|
T Consensus 5 ~~~~~~~i~~~~~~~v~f----~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-i~~~Pt~-~~~ 78 (101)
T cd02961 5 DDNFDELVKDSKDVLVEF----YAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYG-VRGYPTI-KLF 78 (101)
T ss_pred HHHHHHHHhCCCcEEEEE----ECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCC-CCCCCEE-EEE
Confidence 45788888877 444444 34599999999888866 2 46688888888889888888 8888888 777
Q ss_pred ECC-EEeechhh
Q 020081 75 CKG-ELLGGCDI 85 (331)
Q Consensus 75 i~g-~~vgg~~~ 85 (331)
.+| +.+..+.+
T Consensus 79 ~~~~~~~~~~~g 90 (101)
T cd02961 79 PNGSKEPVKYEG 90 (101)
T ss_pred cCCCcccccCCC
Confidence 766 55555543
No 165
>PTZ00051 thioredoxin; Provisional
Probab=98.35 E-value=1.2e-06 Score=66.82 Aligned_cols=71 Identities=18% Similarity=0.309 Sum_probs=53.0
Q ss_pred HHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc-----CCCCeEEEecCCCHHHHHHHHhhcCCCCccee--eec
Q 020081 126 TSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ-----GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL--YIK 198 (331)
Q Consensus 126 ~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-----~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i--fi~ 198 (331)
.+.++++++.++.+++.++ ++||++|+.+.+.|.+ .++.|..+|++++..+. .++ ++.++|++ |.+
T Consensus 8 ~~~~~~~~~~~~~vli~f~---~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~---~~~-~v~~~Pt~~~~~~ 80 (98)
T PTZ00051 8 QAEFESTLSQNELVIVDFY---AEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVA---EKE-NITSMPTFKVFKN 80 (98)
T ss_pred HHHHHHHHhcCCeEEEEEE---CCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHH---HHC-CCceeeEEEEEeC
Confidence 3557777788777777773 5789999999888865 35778888988766655 444 99999999 557
Q ss_pred Ccccc
Q 020081 199 GELIG 203 (331)
Q Consensus 199 G~~vg 203 (331)
|+.++
T Consensus 81 g~~~~ 85 (98)
T PTZ00051 81 GSVVD 85 (98)
T ss_pred CeEEE
Confidence 76663
No 166
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.8e-06 Score=67.15 Aligned_cols=69 Identities=22% Similarity=0.254 Sum_probs=49.9
Q ss_pred HHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc-----CCCCeEEEecCCCHHHHHHHHhhcCCCCccee--eecC
Q 020081 127 SRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ-----GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL--YIKG 199 (331)
Q Consensus 127 ~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-----~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i--fi~G 199 (331)
.........++.+|+.|+ ++|||+|+.+.+.+.+ .++.|..+|+++..++. +++ +++.+||+ +.+|
T Consensus 12 ~~~~~~~~~~kliVvdF~---a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~---~~~-~V~~~PTf~f~k~g 84 (106)
T KOG0907|consen 12 LVLSAAEAGDKLVVVDFY---ATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVA---KEF-NVKAMPTFVFYKGG 84 (106)
T ss_pred HHHHHhhCCCCeEEEEEE---CCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHH---Hhc-CceEeeEEEEEECC
Confidence 334444455677776665 3689999999999986 35778899998855555 444 99999999 4466
Q ss_pred ccc
Q 020081 200 ELI 202 (331)
Q Consensus 200 ~~v 202 (331)
+.+
T Consensus 85 ~~~ 87 (106)
T KOG0907|consen 85 EEV 87 (106)
T ss_pred EEE
Confidence 554
No 167
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.34 E-value=1.2e-06 Score=69.09 Aligned_cols=76 Identities=16% Similarity=0.100 Sum_probs=57.3
Q ss_pred hHHHHHHHHhcCCCEEEEEecCCCCCCCc---chHHHHHHhhcC--CCCeEEEecCCCHH-HHHHHHhhcCCC--Cccee
Q 020081 124 TLTSRLESLINSSPVMLFMKGKPEEPKCG---FSGKVVEILKQG--KVDFGSFDILTDEE-VRQGLKVYSNWS--SYPQL 195 (331)
Q Consensus 124 ~~~~~~~~~~~~~~vvvf~~~~~~~~~C~---~C~~~~~~l~~~--~i~~~~~di~~~~~-~~~~l~~~~~~~--~vP~i 195 (331)
.....|++.++.++.+|..|++|| |||+ +|+++.+.+.+. .|.+..||++...+ ....|.+.+|+. ++|||
T Consensus 6 L~~~nF~~~v~~~~~vlV~F~A~~-Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl 84 (116)
T cd03007 6 LDTVTFYKVIPKFKYSLVKFDTAY-PYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVI 84 (116)
T ss_pred CChhhHHHHHhcCCcEEEEEeCCC-CCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEE
Confidence 355679999999999999999999 9999 999999888553 47788999853111 112233444999 99999
Q ss_pred --eecCc
Q 020081 196 --YIKGE 200 (331)
Q Consensus 196 --fi~G~ 200 (331)
|.+|+
T Consensus 85 ~lF~~g~ 91 (116)
T cd03007 85 YLFHGGD 91 (116)
T ss_pred EEEeCCC
Confidence 66774
No 168
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.33 E-value=2.9e-06 Score=60.89 Aligned_cols=67 Identities=19% Similarity=0.217 Sum_probs=52.9
Q ss_pred EEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEEC-CeEEeeHHHHHHH
Q 020081 247 MLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHK-GELIGGCDIVMEL 319 (331)
Q Consensus 247 ~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~-g~~igg~~~~~~~ 319 (331)
++|+ .++||+|.+++.+|+.+|++|+.++++... ...++.+.....+||++..+ |..+.....+.++
T Consensus 2 ~ly~-----~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~-~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y 69 (71)
T cd03060 2 ILYS-----FRRCPYAMRARMALLLAGITVELREVELKN-KPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRW 69 (71)
T ss_pred EEEe-----cCCCcHHHHHHHHHHHcCCCcEEEEeCCCC-CCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHh
Confidence 5777 469999999999999999999999986432 23567778888999999986 8887766555443
No 169
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.32 E-value=3.2e-06 Score=63.58 Aligned_cols=72 Identities=13% Similarity=0.152 Sum_probs=57.8
Q ss_pred cCCEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEEC-CeEEeeHHHHHHHH
Q 020081 243 SSPVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHK-GELIGGCDIVMELK 320 (331)
Q Consensus 243 ~~~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~-g~~igg~~~~~~~~ 320 (331)
...+.+|+ .+.||+|.+++.+|..+|++|+.++++... ..+++.+.+...++|++.++ |..+.....+.++.
T Consensus 16 ~~~~~Ly~-----~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yL 88 (89)
T cd03055 16 PGIIRLYS-----MRFCPYAQRARLVLAAKNIPHEVININLKD-KPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYL 88 (89)
T ss_pred CCcEEEEe-----CCCCchHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhh
Confidence 34589998 568999999999999999999999986432 23457777888899999998 78888777666553
No 170
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.31 E-value=4.1e-06 Score=61.19 Aligned_cols=68 Identities=13% Similarity=0.134 Sum_probs=52.7
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEEC--CEEeechhhHHh
Q 020081 16 VMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCK--GELLGGCDIVIA 88 (331)
Q Consensus 16 vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~--g~~vgg~~~~~~ 88 (331)
+.+|++. +||+|++++.+|.++|++|..+++.........+.++++..++|++..+ |..+.+...+..
T Consensus 2 ~~Ly~~~-----~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~ 71 (77)
T cd03041 2 LELYEFE-----GSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVK 71 (77)
T ss_pred ceEecCC-----CCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHH
Confidence 4577765 8999999999999999999999997665445566668888899998763 566666554443
No 171
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.31 E-value=3.5e-06 Score=60.51 Aligned_cols=69 Identities=26% Similarity=0.379 Sum_probs=55.2
Q ss_pred EEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHHH
Q 020081 247 MLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKD 321 (331)
Q Consensus 247 ~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~~ 321 (331)
++|+ .+.||+|.+++.+|+..|++|+.++++.. ....++.+.....++|++..||..+.....+.++.+
T Consensus 2 ~ly~-----~~~~~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 70 (73)
T cd03059 2 TLYS-----GPDDVYSHRVRIVLAEKGVSVEIIDVDPD-NPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLD 70 (73)
T ss_pred EEEE-----CCCChhHHHHHHHHHHcCCccEEEEcCCC-CCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 5788 56999999999999999999999988643 223456667778899999888888887777766644
No 172
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.29 E-value=1.5e-06 Score=71.49 Aligned_cols=69 Identities=12% Similarity=0.200 Sum_probs=47.8
Q ss_pred HHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc------CCCCeEEEecCCCHHHHHHHHhhcCCCCccee-ee--cC
Q 020081 129 LESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ------GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL-YI--KG 199 (331)
Q Consensus 129 ~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~------~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i-fi--~G 199 (331)
+++.++..+.+|..| |++||++|+.+.+.|.+ .++.|..+|++.+. ..+.+.++ ++.++|++ |+ +|
T Consensus 13 ~~~a~~~gk~vvV~F---~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~~~~~~~~-~V~~iPt~v~~~~~G 87 (142)
T cd02950 13 PEVALSNGKPTLVEF---YADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-WLPEIDRY-RVDGIPHFVFLDREG 87 (142)
T ss_pred HHHHHhCCCEEEEEE---ECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-cHHHHHHc-CCCCCCEEEEECCCC
Confidence 566666777777677 56899999999888864 24667888887542 12333444 99999999 44 47
Q ss_pred ccc
Q 020081 200 ELI 202 (331)
Q Consensus 200 ~~v 202 (331)
+.+
T Consensus 88 ~~v 90 (142)
T cd02950 88 NEE 90 (142)
T ss_pred CEE
Confidence 655
No 173
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=1.6e-06 Score=64.55 Aligned_cols=87 Identities=22% Similarity=0.348 Sum_probs=65.6
Q ss_pred CCEEEEecCCCCCCC-CcchHHHHHHHhhcCCccEEEEecCCHHHHHHHH--------hhcCCCCcCEEEECCeEEeeHH
Q 020081 244 SPVMLFMKGNPDSPR-CGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLK--------VYSNWPTFPQLYHKGELIGGCD 314 (331)
Q Consensus 244 ~~v~vy~k~~p~~~~-Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~--------~~~g~~~vP~ifi~g~~igg~~ 314 (331)
..|.+|+++++..+- =--=.++..+|+...|.|+++||....+.++++. -..|.+..||||-++++.|+|+
T Consensus 2 ~~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye 81 (108)
T KOG4023|consen 2 MVIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYE 81 (108)
T ss_pred CceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHH
Confidence 357788876332211 1113456788999999999999987665555443 3448889999999999999999
Q ss_pred HHHHHHHcCCchhhhc
Q 020081 315 IVMELKDNGELKSTLS 330 (331)
Q Consensus 315 ~~~~~~~~g~L~~~l~ 330 (331)
.+.+..++..|.+.|+
T Consensus 82 ~F~ea~E~ntl~eFL~ 97 (108)
T KOG4023|consen 82 LFFEAVEQNTLQEFLG 97 (108)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999988875
No 174
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.27 E-value=8.1e-07 Score=68.34 Aligned_cols=67 Identities=16% Similarity=0.388 Sum_probs=50.1
Q ss_pred HHHHHHhhCCC--EEEEEecCCCCCCChhHHHHHHHHHhC--------CCCeEEEEecC-CHHHHHHHhhhhCCCcccEE
Q 020081 5 SRLQQLLDSHP--VMLFMKGTPEEPKCGFSRQVVDILKDE--------KVEFGSFNILS-DNEVREGLKKFSNWPTFPQL 73 (331)
Q Consensus 5 ~~~~~~i~~~~--vvvf~~~~~~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~-~~~~~~~~~~~~~~~t~P~i 73 (331)
+.+++++...+ ++++. |++||++|+.+.+.+.+. ++.+..+|.+. ++.+...++ +++.|++ .+
T Consensus 8 ~~~~~~~~~~~~~~~v~f----~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~-i~~~P~~-~~ 81 (105)
T cd02998 8 SNFDKVVGDDKKDVLVEF----YAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYG-VSGFPTL-KF 81 (105)
T ss_pred hcHHHHhcCCCCcEEEEE----ECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCC-CCCcCEE-EE
Confidence 45677776544 34433 456999999998887662 35677888888 788888888 8899998 77
Q ss_pred EECC
Q 020081 74 YCKG 77 (331)
Q Consensus 74 fi~g 77 (331)
|.+|
T Consensus 82 ~~~~ 85 (105)
T cd02998 82 FPKG 85 (105)
T ss_pred EeCC
Confidence 8776
No 175
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.27 E-value=2.1e-06 Score=62.70 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=35.1
Q ss_pred CCChhHHHHHH----HHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEe
Q 020081 27 PKCGFSRQVVD----ILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELL 80 (331)
Q Consensus 27 ~~C~~C~~~~~----~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~v 80 (331)
+|||+|+.+.+ +++++++.+..+++++.++ ... .|..++|.+++||+.+
T Consensus 8 ~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~-a~~----~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 8 TGCANCQMTEKNVKKAVEELGIDAEFEKVTDMNE-ILE----AGVTATPGVAVDGELV 60 (76)
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHH-HHH----cCCCcCCEEEECCEEE
Confidence 49999999955 5555788888888874333 222 3667778888899876
No 176
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.26 E-value=7.4e-07 Score=69.30 Aligned_cols=49 Identities=22% Similarity=0.411 Sum_probs=40.1
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCC
Q 020081 246 VMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPT 299 (331)
Q Consensus 246 v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~ 299 (331)
|+||+ .|+||+|++|+++|+++|++|+++|+..++...++|.++.+...
T Consensus 1 i~iY~-----~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~~ 49 (105)
T cd02977 1 ITIYG-----NPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAKLG 49 (105)
T ss_pred CEEEE-----CCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHhcC
Confidence 57899 46999999999999999999999999877666666666654433
No 177
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.25 E-value=2.8e-06 Score=66.39 Aligned_cols=68 Identities=19% Similarity=0.377 Sum_probs=47.2
Q ss_pred HHHHHHhh---CCCEEEEEecCCCCCCChhHHHHHHHHHhC-------CCCeEEEEecC-CHHHHH-HHhhhhCCCcccE
Q 020081 5 SRLQQLLD---SHPVMLFMKGTPEEPKCGFSRQVVDILKDE-------KVEFGSFNILS-DNEVRE-GLKKFSNWPTFPQ 72 (331)
Q Consensus 5 ~~~~~~i~---~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-------~i~~~~vdi~~-~~~~~~-~~~~~~~~~t~P~ 72 (331)
+.|++++. +.+++++.+ +++||++|+++.+.|.++ ++.+..+|.+. +..+.. .++ +.+.||+ .
T Consensus 9 ~~~~~~~~~~~~~k~vlv~f---~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~-v~~~Pti-~ 83 (109)
T cd02993 9 AEIEALAKGERRNQSTLVVL---YAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQ-LKSFPTI-L 83 (109)
T ss_pred HHHHHHHhhhhcCCCEEEEE---ECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcC-CCcCCEE-E
Confidence 46777763 344444444 356999999999988773 46688888887 455544 355 8888888 7
Q ss_pred EEECC
Q 020081 73 LYCKG 77 (331)
Q Consensus 73 ifi~g 77 (331)
+|.+|
T Consensus 84 ~f~~~ 88 (109)
T cd02993 84 FFPKN 88 (109)
T ss_pred EEcCC
Confidence 78776
No 178
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.24 E-value=3.8e-06 Score=64.69 Aligned_cols=54 Identities=9% Similarity=0.150 Sum_probs=40.7
Q ss_pred CCCEEEEEecCCCCCCCcchHHHHHHhhc-----CCCCeEEEecC-CCHHHHHHHHhhcCCCCccee
Q 020081 135 SSPVMLFMKGKPEEPKCGFSGKVVEILKQ-----GKVDFGSFDIL-TDEEVRQGLKVYSNWSSYPQL 195 (331)
Q Consensus 135 ~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-----~~i~~~~~di~-~~~~~~~~l~~~~~~~~vP~i 195 (331)
..+++|..+ |++||++|+.+.+.|++ .++.+..+|.+ .++++. +++ ++.++||+
T Consensus 17 ~g~~vlV~F---~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~---~~~-~V~~~PT~ 76 (100)
T cd02999 17 REDYTAVLF---YASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLL---SRY-GVVGFPTI 76 (100)
T ss_pred CCCEEEEEE---ECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHH---Hhc-CCeecCEE
Confidence 567777777 45899999999888865 35677778877 556555 344 99999999
No 179
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.24 E-value=3e-06 Score=64.41 Aligned_cols=69 Identities=14% Similarity=0.294 Sum_probs=49.5
Q ss_pred HHHHHHhcCC--CEEEEEecCCCCCCCcchHHHHHHhhc------CCCCeEEEecCCCHHHHHHHHhhcCCCCccee--e
Q 020081 127 SRLESLINSS--PVMLFMKGKPEEPKCGFSGKVVEILKQ------GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL--Y 196 (331)
Q Consensus 127 ~~~~~~~~~~--~vvvf~~~~~~~~~C~~C~~~~~~l~~------~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i--f 196 (331)
+.+++++... +.++..+ |++||++|+.+.+.|++ .++.+..+|..+.+++. +++ ++.++|++ |
T Consensus 3 ~~~~~~~~~~~~~~v~v~f---~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~---~~~-~i~~~Pt~~~~ 75 (97)
T cd02984 3 EEFEELLKSDASKLLVLHF---WAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEIS---EKF-EITAVPTFVFF 75 (97)
T ss_pred HHHHHHHhhCCCCEEEEEE---ECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHH---Hhc-CCccccEEEEE
Confidence 3466666554 7776666 35799999999888865 25667778887777665 344 99999999 5
Q ss_pred ecCccc
Q 020081 197 IKGELI 202 (331)
Q Consensus 197 i~G~~v 202 (331)
.+|+.+
T Consensus 76 ~~g~~~ 81 (97)
T cd02984 76 RNGTIV 81 (97)
T ss_pred ECCEEE
Confidence 577655
No 180
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.23 E-value=2.8e-06 Score=68.02 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=44.3
Q ss_pred HHHHHHhcCC-CEEEEEecCCCCCCCcchHHHHHHhhc---------CCCCeEEEecCCCHHH---------HHHHHhhc
Q 020081 127 SRLESLINSS-PVMLFMKGKPEEPKCGFSGKVVEILKQ---------GKVDFGSFDILTDEEV---------RQGLKVYS 187 (331)
Q Consensus 127 ~~~~~~~~~~-~vvvf~~~~~~~~~C~~C~~~~~~l~~---------~~i~~~~~di~~~~~~---------~~~l~~~~ 187 (331)
+.+++..+.. ++++..+ |++||++|+.+.+.+.+ .++.+..+|++.+... ...+...+
T Consensus 4 ~~~~~a~~~~~k~vlv~f---~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~ 80 (125)
T cd02951 4 EDLAEAAADGKKPLLLLF---SQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKY 80 (125)
T ss_pred HHHHHHHHcCCCcEEEEE---eCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHc
Confidence 4466666766 6666666 45789999988765531 2455667777654211 12233444
Q ss_pred CCCCccee-eecC
Q 020081 188 NWSSYPQL-YIKG 199 (331)
Q Consensus 188 ~~~~vP~i-fi~G 199 (331)
++.++|++ |+++
T Consensus 81 ~v~~~Pt~~~~~~ 93 (125)
T cd02951 81 RVRFTPTVIFLDP 93 (125)
T ss_pred CCccccEEEEEcC
Confidence 99999998 5543
No 181
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.23 E-value=7.5e-06 Score=58.99 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=55.2
Q ss_pred EEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecC--CHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHH
Q 020081 247 MLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILT--DEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELK 320 (331)
Q Consensus 247 ~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~--~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~ 320 (331)
.+|+ .+.||+|.+++.+|+..|++|+.++++. ......++.+......+|++..+|..+.....+..+.
T Consensus 2 ~Ly~-----~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 72 (74)
T cd03045 2 DLYY-----LPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYL 72 (74)
T ss_pred EEEe-----CCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHH
Confidence 5787 5799999999999999999999998863 3334567778888889999999888777666665543
No 182
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.22 E-value=5.2e-06 Score=59.57 Aligned_cols=68 Identities=19% Similarity=0.180 Sum_probs=52.4
Q ss_pred EEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCC--HHHHHHHHhhcCCCCcCEEEE-CCeEEeeHHHHHHH
Q 020081 247 MLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTD--EEVRQGLKVYSNWPTFPQLYH-KGELIGGCDIVMEL 319 (331)
Q Consensus 247 ~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~--~~~~~~l~~~~g~~~vP~ifi-~g~~igg~~~~~~~ 319 (331)
.+|. .++||+|.+++.+|+.+|++|+.+.++.. .....++.+.....++|++.+ ||..+.....+..+
T Consensus 2 ~Ly~-----~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~y 72 (74)
T cd03051 2 KLYD-----SPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRY 72 (74)
T ss_pred EEEe-----CCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHH
Confidence 5788 56999999999999999999999988642 223456778888889999987 56666665555443
No 183
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.22 E-value=9.3e-06 Score=66.29 Aligned_cols=68 Identities=9% Similarity=-0.005 Sum_probs=48.5
Q ss_pred HHHHHHHh--cCCCEEEEEecCCCCCCCcchHHHHHHhhcC-----C-CCeEEEecCCCHHHHHHHHhhcCCCCccee--
Q 020081 126 TSRLESLI--NSSPVMLFMKGKPEEPKCGFSGKVVEILKQG-----K-VDFGSFDILTDEEVRQGLKVYSNWSSYPQL-- 195 (331)
Q Consensus 126 ~~~~~~~~--~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~-i~~~~~di~~~~~~~~~l~~~~~~~~vP~i-- 195 (331)
.+.+++.+ ...+++|..|+ ++||++|+.+.+.|.+. + +.+..+|+++++++.+.+ ++++.|++
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~---A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y----~I~~~~t~~~ 83 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFG---HDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMY----ELYDPCTVMF 83 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEE---CCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHc----CccCCCcEEE
Confidence 44566555 35778888884 58999999999988762 3 456889999999888333 88866544
Q ss_pred -eecCc
Q 020081 196 -YIKGE 200 (331)
Q Consensus 196 -fi~G~ 200 (331)
|-||+
T Consensus 84 ffk~g~ 89 (142)
T PLN00410 84 FFRNKH 89 (142)
T ss_pred EEECCe
Confidence 33665
No 184
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.21 E-value=5.3e-06 Score=58.20 Aligned_cols=67 Identities=13% Similarity=0.085 Sum_probs=52.5
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechhhHHh
Q 020081 17 MLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIA 88 (331)
Q Consensus 17 vvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~~ 88 (331)
.+|++. +||+|.+++.+|+.++++|..++++........+.+.++..++|.++.+|..++....+..
T Consensus 2 ~ly~~~-----~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~ 68 (71)
T cd00570 2 KLYYFP-----GSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILE 68 (71)
T ss_pred EEEeCC-----CCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHH
Confidence 356654 8999999999999999999998887553222245667899999999999999887765443
No 185
>PRK09381 trxA thioredoxin; Provisional
Probab=98.20 E-value=3.9e-06 Score=65.39 Aligned_cols=66 Identities=20% Similarity=0.356 Sum_probs=47.2
Q ss_pred HHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc------CCCCeEEEecCCCHHHHHHHHhhcCCCCccee--eecCccc
Q 020081 131 SLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ------GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL--YIKGELI 202 (331)
Q Consensus 131 ~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~------~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i--fi~G~~v 202 (331)
++++.++.++..+ |++||++|+.+.+.|++ .++.+..+|++.++.+. +++ ++.++|++ |-+|+.+
T Consensus 16 ~v~~~~~~vvv~f---~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~---~~~-~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 16 DVLKADGAILVDF---WAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA---PKY-GIRGIPTLLLFKNGEVA 88 (109)
T ss_pred HHhcCCCeEEEEE---ECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHH---HhC-CCCcCCEEEEEeCCeEE
Confidence 3455455555555 34799999999888864 34668889998877765 333 99999999 4478766
Q ss_pred c
Q 020081 203 G 203 (331)
Q Consensus 203 g 203 (331)
+
T Consensus 89 ~ 89 (109)
T PRK09381 89 A 89 (109)
T ss_pred E
Confidence 4
No 186
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.19 E-value=5.3e-05 Score=68.16 Aligned_cols=291 Identities=16% Similarity=0.223 Sum_probs=149.5
Q ss_pred HHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC-----------CCCeEEEEecCCHHHHHHHhhhhCCCcccEE
Q 020081 5 SRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE-----------KVEFGSFNILSDNEVREGLKKFSNWPTFPQL 73 (331)
Q Consensus 5 ~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----------~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~i 73 (331)
+.++.++..+.+|...++ |.||++++++++++.+. .+-+..||.+.+..+++.+. ++..||+ .|
T Consensus 4 ~N~~~il~s~elvfv~Fy---AdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~-I~KyPTl-Kv 78 (375)
T KOG0912|consen 4 ENIDSILDSNELVFVNFY---ADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYH-INKYPTL-KV 78 (375)
T ss_pred ccHHHhhccceEEeeeee---hhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhc-cccCcee-ee
Confidence 567888888887777664 67999999999999984 34578899999999999999 9999999 99
Q ss_pred EECCEEee-chhhHHhhhcccchHHHHHhcCcccccCCCCCCCCCCcccchhHHHHHHHHhc-CCCEEEEEecCCCCCCC
Q 020081 74 YCKGELLG-GCDIVIAMHKSGELKDVFRDHGIETVGGSGKSGISESTGLSATLTSRLESLIN-SSPVMLFMKGKPEEPKC 151 (331)
Q Consensus 74 fi~g~~vg-g~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vvvf~~~~~~~~~C 151 (331)
|.||.... .|.+-+. -..|.+.+++.--+++.. -.....++.+.. +...++-.+.+...|.-
T Consensus 79 frnG~~~~rEYRg~Rs---VeaL~efi~kq~s~~i~E-------------f~sl~~l~n~~~p~K~~vIgyF~~kdspey 142 (375)
T KOG0912|consen 79 FRNGEMMKREYRGQRS---VEALIEFIEKQLSDPINE-------------FESLDQLQNLDIPSKRTVIGYFPSKDSPEY 142 (375)
T ss_pred eeccchhhhhhccchh---HHHHHHHHHHHhccHHHH-------------HHhHHHHHhhhccccceEEEEeccCCCchH
Confidence 99997654 2332222 233555555551111000 011223344443 33334333322111222
Q ss_pred cchHHHHHHhhcCCCCeEEE-ecCCCHHHHHHHHhhcCCCCcceeeecCccccch-hhHHHHhhcchhHHHHhhhccchh
Q 020081 152 GFSGKVVEILKQGKVDFGSF-DILTDEEVRQGLKVYSNWSSYPQLYIKGELIGGS-DIVLEMQKSGELKKVLAEKGITVE 229 (331)
Q Consensus 152 ~~C~~~~~~l~~~~i~~~~~-di~~~~~~~~~l~~~~~~~~vP~ifi~G~~vgg~-d~~~~~~~~g~L~~~l~~~~~~~~ 229 (331)
.--+++..+|.+.-.=..-+ |..... -...-+.++.+|...... .-+..+..-.+|..++++.-.+..
T Consensus 143 ~~~~kva~~lr~dc~f~V~~gD~~~~~----------~~~~~~~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLV 212 (375)
T KOG0912|consen 143 DNLRKVASLLRDDCVFLVGFGDLLKPH----------EPPGKNILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLV 212 (375)
T ss_pred HHHHHHHHHHhhccEEEeeccccccCC----------CCCCCceEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhh
Confidence 22356666665432111111 332211 112223344444332110 111112244567888887665544
Q ss_pred hhhHHHHHHHHhhc-CCEEE-EecCCCCCCCCcchHH-HHHHHhhcC-CccEEEEecCCHHHHHHHHhhc-CCCCcCEEE
Q 020081 230 KENLEDRLKNLITS-SPVML-FMKGNPDSPRCGFSSK-VVNALKEEG-VNFGSFDILTDEEVRQGLKVYS-NWPTFPQLY 304 (331)
Q Consensus 230 ~~~~~~~~~~~~~~-~~v~v-y~k~~p~~~~Cp~C~~-a~~~l~~~~-v~~~~~dv~~~~~~~~~l~~~~-g~~~vP~if 304 (331)
.+-+-+..+++... .+.+| |-+..-..+-=-|-.. ++++.++.+ |.+-.-| ..-.+--|.-++ +-.-+|+|.
T Consensus 213 REiTFeN~EELtEEGlPflILf~~kdD~~s~k~F~~aI~ReL~~e~~~in~l~AD---G~~f~hpL~HlgKs~~DLPvia 289 (375)
T KOG0912|consen 213 REITFENAEELTEEGLPFLILFRKKDDKESEKIFKNAIARELDDETLAINFLTAD---GKVFKHPLRHLGKSPDDLPVIA 289 (375)
T ss_pred hhhhhccHHHHhhcCCceEEEEecCCcccHHHHHHHHHHHHhhhhhhccceeecC---cceecchHHHhCCCcccCcEEE
Confidence 45555556666654 45555 3321000000111112 223333333 2222111 122222244444 455799999
Q ss_pred ECC-eEEeeHHHHHHHHHcCCchhhh
Q 020081 305 HKG-ELIGGCDIVMELKDNGELKSTL 329 (331)
Q Consensus 305 i~g-~~igg~~~~~~~~~~g~L~~~l 329 (331)
||. +|.-=|-+....+.-|.|.+.+
T Consensus 290 IDsF~Hmylfp~f~di~~pGkLkqFv 315 (375)
T KOG0912|consen 290 IDSFRHMYLFPDFNDINIPGKLKQFV 315 (375)
T ss_pred eeccceeeecCchhhhcCccHHHHHH
Confidence 986 5665555566667777766543
No 187
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.18 E-value=4.3e-06 Score=71.14 Aligned_cols=58 Identities=22% Similarity=0.200 Sum_probs=42.3
Q ss_pred EEEEEecCCCCCCCcchHHHHHHhhc-----CCCCeEEEecCCCHHHHHHHHhhcCCCCccee--eecCcccc
Q 020081 138 VMLFMKGKPEEPKCGFSGKVVEILKQ-----GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL--YIKGELIG 203 (331)
Q Consensus 138 vvvf~~~~~~~~~C~~C~~~~~~l~~-----~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i--fi~G~~vg 203 (331)
.+|..+ |++||+.|+.+.+.|.+ ..+.|..+|++.. ++. ..+++.++|++ |.+|+.++
T Consensus 85 ~VVV~F---ya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~----~~f~v~~vPTlllyk~G~~v~ 149 (175)
T cd02987 85 TVVVHI---YEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GAS----DEFDTDALPALLVYKGGELIG 149 (175)
T ss_pred EEEEEE---ECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhH----HhCCCCCCCEEEEEECCEEEE
Confidence 555555 34799999988887765 3577888998764 333 33499999999 66898774
No 188
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.18 E-value=2.9e-06 Score=68.64 Aligned_cols=43 Identities=28% Similarity=0.400 Sum_probs=36.1
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHh
Q 020081 246 VMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKV 293 (331)
Q Consensus 246 v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~ 293 (331)
|+||+ .|+||+|++|+++|+++||+|+++|+..++..+++|.+
T Consensus 2 i~iY~-----~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~ 44 (131)
T PRK01655 2 VTLFT-----SPSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQ 44 (131)
T ss_pred EEEEe-----CCCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHH
Confidence 78999 57999999999999999999999999876555544443
No 189
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.15 E-value=6.9e-06 Score=63.37 Aligned_cols=67 Identities=27% Similarity=0.393 Sum_probs=47.4
Q ss_pred HHHHHHHh-cCCCEEEEEecCCCCCCCcchHHHHHHhhc------CCCCeEEEecCCCHHHHHHHHhhcCCCCccee--e
Q 020081 126 TSRLESLI-NSSPVMLFMKGKPEEPKCGFSGKVVEILKQ------GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL--Y 196 (331)
Q Consensus 126 ~~~~~~~~-~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~------~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i--f 196 (331)
.+.+++++ +..+.++..+ |++||++|+.+.+.+++ ..+.+..+|+++++++. +++ ++.++|++ |
T Consensus 8 ~~~f~~~i~~~~~~v~v~f---~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~---~~~-~i~~~Pt~~~~ 80 (104)
T cd03004 8 PEDFPELVLNRKEPWLVDF---YAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLC---QQA-NIRAYPTIRLY 80 (104)
T ss_pred HHHHHHHHhcCCCeEEEEE---ECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHH---HHc-CCCcccEEEEE
Confidence 34566654 3445555556 34799999998888864 24678899998877765 333 99999999 4
Q ss_pred ecC
Q 020081 197 IKG 199 (331)
Q Consensus 197 i~G 199 (331)
.+|
T Consensus 81 ~~g 83 (104)
T cd03004 81 PGN 83 (104)
T ss_pred cCC
Confidence 465
No 190
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.15 E-value=2.8e-06 Score=65.19 Aligned_cols=68 Identities=15% Similarity=0.383 Sum_probs=48.2
Q ss_pred HHHHHHHhhCC--CEEEEEecCCCCCCChhHHHHHHHHHhC--------CCCeEEEEecCCHHHHHHHhhhhCCCcccEE
Q 020081 4 KSRLQQLLDSH--PVMLFMKGTPEEPKCGFSRQVVDILKDE--------KVEFGSFNILSDNEVREGLKKFSNWPTFPQL 73 (331)
Q Consensus 4 ~~~~~~~i~~~--~vvvf~~~~~~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~i 73 (331)
.+.+++.+.+. .++|+. |++||++|+.+.+.+.+. .+.+..+|.+.+ ++...+. +.+.||+ .+
T Consensus 7 ~~~f~~~i~~~~~~~~v~f----~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~-~~~~Pt~-~~ 79 (104)
T cd02995 7 GKNFDEVVLDSDKDVLVEF----YAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFV-VDGFPTI-LF 79 (104)
T ss_pred hhhhHHHHhCCCCcEEEEE----ECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhcc-CCCCCEE-EE
Confidence 34677777554 455544 356999999998888773 256778888766 4555565 6788988 88
Q ss_pred EECCE
Q 020081 74 YCKGE 78 (331)
Q Consensus 74 fi~g~ 78 (331)
|.+|+
T Consensus 80 ~~~~~ 84 (104)
T cd02995 80 FPAGD 84 (104)
T ss_pred EcCCC
Confidence 88886
No 191
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.14 E-value=8.9e-06 Score=59.30 Aligned_cols=54 Identities=24% Similarity=0.460 Sum_probs=39.8
Q ss_pred CEEEEecCCCCCCCCcchHHHHHHH----hhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeE
Q 020081 245 PVMLFMKGNPDSPRCGFSSKVVNAL----KEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGEL 309 (331)
Q Consensus 245 ~v~vy~k~~p~~~~Cp~C~~a~~~l----~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~ 309 (331)
+|.+|+ ++||+|..+.+++ ...++.++.+|+ .+. +++ ..+|..++|.++|||+.
T Consensus 2 ~I~v~~------~~C~~C~~~~~~~~~~~~~~~i~~ei~~~-~~~---~~~-~~ygv~~vPalvIng~~ 59 (76)
T PF13192_consen 2 KIKVFS------PGCPYCPELVQLLKEAAEELGIEVEIIDI-EDF---EEI-EKYGVMSVPALVINGKV 59 (76)
T ss_dssp EEEEEC------SSCTTHHHHHHHHHHHHHHTTEEEEEEET-TTH---HHH-HHTT-SSSSEEEETTEE
T ss_pred EEEEeC------CCCCCcHHHHHHHHHHHHhcCCeEEEEEc-cCH---HHH-HHcCCCCCCEEEECCEE
Confidence 355655 5899999888764 567888888887 333 234 66899999999999983
No 192
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.13 E-value=6.9e-06 Score=59.61 Aligned_cols=65 Identities=23% Similarity=0.362 Sum_probs=56.1
Q ss_pred CCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHHH
Q 020081 256 SPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKD 321 (331)
Q Consensus 256 ~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~~ 321 (331)
.++||+|.+++-+|+.+|++|+.+++..... ..++.+..+..++|++..||..+.....+.++.+
T Consensus 4 ~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~ 68 (75)
T PF13417_consen 4 FPGSPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLE 68 (75)
T ss_dssp ETTSHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhcccccceEEEECCEEEeCHHHHHHHHH
Confidence 4699999999999999999999999975433 6677888899999999999999998888877654
No 193
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.12 E-value=5.1e-06 Score=65.60 Aligned_cols=72 Identities=14% Similarity=0.187 Sum_probs=51.2
Q ss_pred HHHHHHHhhCCC-EEEEEecCCCCCCChhHHHHHHHHHhC---------CCCeEEEEec--CCHHHHHHHhhhhCCCccc
Q 020081 4 KSRLQQLLDSHP-VMLFMKGTPEEPKCGFSRQVVDILKDE---------KVEFGSFNIL--SDNEVREGLKKFSNWPTFP 71 (331)
Q Consensus 4 ~~~~~~~i~~~~-vvvf~~~~~~~~~C~~C~~~~~~l~~~---------~i~~~~vdi~--~~~~~~~~~~~~~~~~t~P 71 (331)
.+.|++.+.++. .++..+ |++||++|+.+.+.+++. .+.+..+|.+ .++++.+.++ +.+.||+
T Consensus 8 ~~~f~~~i~~~~~~vvV~f---~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~-i~~~Pt~- 82 (114)
T cd02992 8 AASFNSALLGSPSAWLVEF---YASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFG-VTGYPTL- 82 (114)
T ss_pred HHhHHHHHhcCCCeEEEEE---ECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCC-CCCCCEE-
Confidence 456788877664 333333 567999999998887763 1556777764 3467777777 8899999
Q ss_pred EEEECCEEe
Q 020081 72 QLYCKGELL 80 (331)
Q Consensus 72 ~ifi~g~~v 80 (331)
.+|.+|+..
T Consensus 83 ~lf~~~~~~ 91 (114)
T cd02992 83 RYFPPFSKE 91 (114)
T ss_pred EEECCCCcc
Confidence 888888733
No 194
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.12 E-value=1.4e-05 Score=58.98 Aligned_cols=53 Identities=25% Similarity=0.391 Sum_probs=43.7
Q ss_pred CEEEEecCCCCCCCCcchHHHHHHHhhc----CCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECC
Q 020081 245 PVMLFMKGNPDSPRCGFSSKVVNALKEE----GVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKG 307 (331)
Q Consensus 245 ~v~vy~k~~p~~~~Cp~C~~a~~~l~~~----~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g 307 (331)
++++|+ +|+|+.|..|+..|+.. ++.++.+||..+++ +.+++|. .+|++.++|
T Consensus 1 ~l~l~~-----k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~----l~~~Y~~-~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYT-----KPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE----LFEKYGY-RIPVLHIDG 57 (81)
T ss_dssp -EEEEE------SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH----HHHHSCT-STSEEEETT
T ss_pred CEEEEc-----CCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHH----HHHHhcC-CCCEEEEcC
Confidence 478999 57999999999999854 46789999998877 5556774 899999999
No 195
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.12 E-value=1.5e-05 Score=57.07 Aligned_cols=65 Identities=15% Similarity=0.268 Sum_probs=49.9
Q ss_pred EEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEEC-CEEeechhhHHhh
Q 020081 18 LFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCK-GELLGGCDIVIAM 89 (331)
Q Consensus 18 vf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~-g~~vgg~~~~~~~ 89 (331)
+|... +||+|++++-+|..+|++|..+.++..... ..+. .++..++|+++.+ |..+++...+.+.
T Consensus 3 Ly~~~-----~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~-~~~~-~~~~~~vP~L~~~~~~~l~es~aI~~y 68 (71)
T cd03037 3 LYIYE-----HCPFCVKARMIAGLKNIPVEQIILQNDDEA-TPIR-MIGAKQVPILEKDDGSFMAESLDIVAF 68 (71)
T ss_pred eEecC-----CCcHhHHHHHHHHHcCCCeEEEECCCCchH-HHHH-hcCCCccCEEEeCCCeEeehHHHHHHH
Confidence 55554 899999999999999999999888754322 2233 6677899999987 8888887766543
No 196
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.12 E-value=1.8e-05 Score=56.62 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=54.4
Q ss_pred EEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecC--CHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHH
Q 020081 247 MLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILT--DEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMEL 319 (331)
Q Consensus 247 ~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~--~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~ 319 (331)
++|. .+.||+|.+++.+|+..|++|+.++++. ......++.+.....++|++..+|..+.....+.++
T Consensus 2 ~Ly~-----~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~y 71 (73)
T cd03056 2 KLYG-----FPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVY 71 (73)
T ss_pred EEEe-----CCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 5677 5799999999999999999999999863 233445677777788999999999888776666554
No 197
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.11 E-value=4.5e-06 Score=66.21 Aligned_cols=73 Identities=14% Similarity=0.259 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc------CCCCeEEEecCCCHHHHHHHHhhcCCCC--ccee-
Q 020081 125 LTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ------GKVDFGSFDILTDEEVRQGLKVYSNWSS--YPQL- 195 (331)
Q Consensus 125 ~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~------~~i~~~~~di~~~~~~~~~l~~~~~~~~--vP~i- 195 (331)
..+.++.....++.++..++ ++||++|+.+.+.+.+ .+..|..+|++.+++.. .+.+++.+ +|++
T Consensus 8 ~~~al~~A~~~~kpVlV~F~---a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~---~~~~~~~g~~vPt~~ 81 (117)
T cd02959 8 LEDGIKEAKDSGKPLMLLIH---KTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPK---DEEFSPDGGYIPRIL 81 (117)
T ss_pred HHHHHHHHHHcCCcEEEEEe---CCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCch---hhhcccCCCccceEE
Confidence 56667777777666666663 4799999999888866 34468888888764321 12236654 9999
Q ss_pred ee--cCcccc
Q 020081 196 YI--KGELIG 203 (331)
Q Consensus 196 fi--~G~~vg 203 (331)
|+ +|+.++
T Consensus 82 f~~~~Gk~~~ 91 (117)
T cd02959 82 FLDPSGDVHP 91 (117)
T ss_pred EECCCCCCch
Confidence 55 565553
No 198
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.11 E-value=2.2e-05 Score=57.08 Aligned_cols=65 Identities=20% Similarity=0.405 Sum_probs=49.0
Q ss_pred CEEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEEC----CEEeechhhHH
Q 020081 15 PVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCK----GELLGGCDIVI 87 (331)
Q Consensus 15 ~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~----g~~vgg~~~~~ 87 (331)
++.+|... .||+|++++.+|..+|++|..++++.. ....+. .++..++|+++.+ |+.+.....+.
T Consensus 1 ~i~Ly~~~-----~~p~c~kv~~~L~~~gi~y~~~~~~~~--~~~~~~-~~~~~~vP~l~~~~~~~~~~l~eS~~I~ 69 (77)
T cd03040 1 KITLYQYK-----TCPFCCKVRAFLDYHGIPYEVVEVNPV--SRKEIK-WSSYKKVPILRVESGGDGQQLVDSSVII 69 (77)
T ss_pred CEEEEEcC-----CCHHHHHHHHHHHHCCCceEEEECCch--hHHHHH-HhCCCccCEEEECCCCCccEEEcHHHHH
Confidence 46778765 899999999999999999999988532 233344 5788899999987 66665554443
No 199
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.10 E-value=7.9e-06 Score=62.11 Aligned_cols=68 Identities=25% Similarity=0.439 Sum_probs=46.0
Q ss_pred HHHHHhcC-CCEEEEEecCCCCCCCcchHHHHHHhhc------CCCCeEEEecCCCHHHHHHHHhhcCCCCcceeee--c
Q 020081 128 RLESLINS-SPVMLFMKGKPEEPKCGFSGKVVEILKQ------GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQLYI--K 198 (331)
Q Consensus 128 ~~~~~~~~-~~vvvf~~~~~~~~~C~~C~~~~~~l~~------~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~ifi--~ 198 (331)
.+.+.+++ .+.+++.++ ++||++|+.+.+.|++ .++.|..+|++.++++. +++ ++.++|++++ +
T Consensus 5 ~~~~~~~~~~~~vvi~f~---~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~---~~~-~v~~~P~~~~~~~ 77 (101)
T TIGR01068 5 NFDETIASSDKPVLVDFW---APWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIA---AKY-GIRSIPTLLLFKN 77 (101)
T ss_pred HHHHHHhhcCCcEEEEEE---CCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHH---HHc-CCCcCCEEEEEeC
Confidence 45554443 334444442 3799999988877764 24788899998887765 344 9999999944 6
Q ss_pred Cccc
Q 020081 199 GELI 202 (331)
Q Consensus 199 G~~v 202 (331)
|+.+
T Consensus 78 g~~~ 81 (101)
T TIGR01068 78 GKEV 81 (101)
T ss_pred CcEe
Confidence 6544
No 200
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.09 E-value=7.9e-06 Score=62.68 Aligned_cols=66 Identities=11% Similarity=0.189 Sum_probs=46.3
Q ss_pred HHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc-------CCCCeEEEecCCCHHHHHHHHhhcCCCCcceeee-
Q 020081 126 TSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ-------GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQLYI- 197 (331)
Q Consensus 126 ~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~ifi- 197 (331)
.+.+++++++..+ ..+ |++||++|+.+.+.+++ .++.+..+|+++++.+. +++ ++.++|++++
T Consensus 8 ~~~f~~~~~~~~l--v~f---~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~---~~~-~i~~~Pt~~~~ 78 (101)
T cd02994 8 DSNWTLVLEGEWM--IEF---YAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLS---GRF-FVTALPTIYHA 78 (101)
T ss_pred hhhHHHHhCCCEE--EEE---ECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHH---HHc-CCcccCEEEEe
Confidence 3456777766533 333 34799999998888764 25678889998877765 344 9999999954
Q ss_pred -cCc
Q 020081 198 -KGE 200 (331)
Q Consensus 198 -~G~ 200 (331)
+|+
T Consensus 79 ~~g~ 82 (101)
T cd02994 79 KDGV 82 (101)
T ss_pred CCCC
Confidence 554
No 201
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.09 E-value=5.1e-06 Score=61.54 Aligned_cols=67 Identities=25% Similarity=0.418 Sum_probs=48.2
Q ss_pred HHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc-----CCCCeEEEecCCCHHHHHHHHhhcCCCCcceeee--cCcc
Q 020081 129 LESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ-----GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQLYI--KGEL 201 (331)
Q Consensus 129 ~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-----~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~ifi--~G~~ 201 (331)
++..++.++.++..++ ++||++|..+.+.|++ .++.+..+|+..++++. +++ ++.++|++++ +|+.
T Consensus 3 ~~~~~~~~~~~ll~~~---~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~-~v~~~P~~~~~~~g~~ 75 (93)
T cd02947 3 FEELIKSAKPVVVDFW---APWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELA---EEY-GVRSIPTFLFFKNGKE 75 (93)
T ss_pred hHHHHhcCCcEEEEEE---CCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHH---Hhc-CcccccEEEEEECCEE
Confidence 4455555444444443 3689999999998876 68889999998877766 333 9999999844 6764
Q ss_pred c
Q 020081 202 I 202 (331)
Q Consensus 202 v 202 (331)
+
T Consensus 76 ~ 76 (93)
T cd02947 76 V 76 (93)
T ss_pred E
Confidence 4
No 202
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.06 E-value=1e-05 Score=78.49 Aligned_cols=70 Identities=20% Similarity=0.372 Sum_probs=52.2
Q ss_pred HHHHHHHhh---CCCEEEEEecCCCCCCChhHHHHHHHHHhC-------CCCeEEEEecCCH-HHH-HHHhhhhCCCccc
Q 020081 4 KSRLQQLLD---SHPVMLFMKGTPEEPKCGFSRQVVDILKDE-------KVEFGSFNILSDN-EVR-EGLKKFSNWPTFP 71 (331)
Q Consensus 4 ~~~~~~~i~---~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-------~i~~~~vdi~~~~-~~~-~~~~~~~~~~t~P 71 (331)
++.|+++++ .++++|..+ |+|||++|+.+.+.|+++ ++.|..+|++.+. .+. +.++ +.++||+
T Consensus 358 ~~nf~~~v~~~~~~k~VLV~F---yApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~-I~~~PTi- 432 (463)
T TIGR00424 358 RPGIENLLKLEERKEAWLVVL---YAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQ-LGSFPTI- 432 (463)
T ss_pred HHHHHHHHhhhcCCCeEEEEE---ECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcC-CCccceE-
Confidence 356778774 555555554 467999999999988774 3678889998763 333 5666 8999999
Q ss_pred EEEECCE
Q 020081 72 QLYCKGE 78 (331)
Q Consensus 72 ~ifi~g~ 78 (331)
.+|.+|.
T Consensus 433 i~Fk~g~ 439 (463)
T TIGR00424 433 LFFPKHS 439 (463)
T ss_pred EEEECCC
Confidence 9999985
No 203
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.05 E-value=8.2e-06 Score=59.49 Aligned_cols=49 Identities=29% Similarity=0.565 Sum_probs=35.6
Q ss_pred CCCcchHHHHHHhh----cCCCCeEEEecCCCHHHHHHHHhhcCCCCcceeeecCccc
Q 020081 149 PKCGFSGKVVEILK----QGKVDFGSFDILTDEEVRQGLKVYSNWSSYPQLYIKGELI 202 (331)
Q Consensus 149 ~~C~~C~~~~~~l~----~~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~ifi~G~~v 202 (331)
++|++|..+.+.++ +++++++.+|+ .+. . .+.++ |+.++|+++|||+.+
T Consensus 8 ~~C~~C~~~~~~~~~~~~~~~i~~ei~~~-~~~--~-~~~~y-gv~~vPalvIng~~~ 60 (76)
T PF13192_consen 8 PGCPYCPELVQLLKEAAEELGIEVEIIDI-EDF--E-EIEKY-GVMSVPALVINGKVV 60 (76)
T ss_dssp SSCTTHHHHHHHHHHHHHHTTEEEEEEET-TTH--H-HHHHT-T-SSSSEEEETTEEE
T ss_pred CCCCCcHHHHHHHHHHHHhcCCeEEEEEc-cCH--H-HHHHc-CCCCCCEEEECCEEE
Confidence 47999998877665 47888888887 332 2 22455 999999999999754
No 204
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.02 E-value=8.5e-06 Score=64.64 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=37.8
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhc
Q 020081 246 VMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYS 295 (331)
Q Consensus 246 v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~ 295 (331)
|.+|+ .++||+|++|+++|+++|++|+++|+..++..++++.++.
T Consensus 1 i~iY~-----~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~ 45 (117)
T TIGR01617 1 IKVYG-----SPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDIL 45 (117)
T ss_pred CEEEe-----CCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHH
Confidence 46898 4699999999999999999999999988766666665443
No 205
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.00 E-value=1.2e-05 Score=61.61 Aligned_cols=69 Identities=19% Similarity=0.442 Sum_probs=46.2
Q ss_pred HHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc--------CCCCeEEEecCC--CHHHHHHHHhhcCCCCccee-
Q 020081 127 SRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ--------GKVDFGSFDILT--DEEVRQGLKVYSNWSSYPQL- 195 (331)
Q Consensus 127 ~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~--------~~i~~~~~di~~--~~~~~~~l~~~~~~~~vP~i- 195 (331)
..++++++.++.++..+ |++||++|+.+.+.+++ ..+.+..+|+.. ++.+. .++ |+.++|++
T Consensus 8 ~~~~~~~~~~~~~~v~f---~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~---~~~-~i~~~Pt~~ 80 (104)
T cd02997 8 EDFRKFLKKEKHVLVMF---YAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALK---EEY-NVKGFPTFK 80 (104)
T ss_pred HhHHHHHhhCCCEEEEE---ECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHH---HhC-CCccccEEE
Confidence 35666676666666666 45799999988766643 235567778876 45544 343 99999999
Q ss_pred -eecCccc
Q 020081 196 -YIKGELI 202 (331)
Q Consensus 196 -fi~G~~v 202 (331)
|-+|+.+
T Consensus 81 ~~~~g~~~ 88 (104)
T cd02997 81 YFENGKFV 88 (104)
T ss_pred EEeCCCee
Confidence 4466544
No 206
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.99 E-value=8.2e-06 Score=64.52 Aligned_cols=46 Identities=22% Similarity=0.384 Sum_probs=39.0
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcC
Q 020081 246 VMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSN 296 (331)
Q Consensus 246 v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g 296 (331)
|.+|+ .++|++|++|+++|+++|++|+++|+..++..+++|.++..
T Consensus 2 i~iY~-----~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~ 47 (115)
T cd03032 2 IKLYT-----SPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILS 47 (115)
T ss_pred EEEEe-----CCCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHH
Confidence 67899 56999999999999999999999999887666666666543
No 207
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=3.8e-05 Score=73.62 Aligned_cols=158 Identities=20% Similarity=0.270 Sum_probs=79.9
Q ss_pred HHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhcC------CCCeEEEecCCCHHHHHHHHhhcCCCCccee--eecC-c
Q 020081 130 ESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQG------KVDFGSFDILTDEEVRQGLKVYSNWSSYPQL--YIKG-E 200 (331)
Q Consensus 130 ~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~------~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i--fi~G-~ 200 (331)
..+.......+..+. +|||++|.+..+.+.+. .+.+..+|...+.++. +.+++.++|++ |.+| +
T Consensus 41 ~~~~~~~~~~~v~fy---apwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~----~~y~i~gfPtl~~f~~~~~ 113 (383)
T KOG0191|consen 41 DFLLKDDSPWLVEFY---APWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLC----EKYGIQGFPTLKVFRPGKK 113 (383)
T ss_pred HHhhccCCceEEEEE---CCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHH----HhcCCccCcEEEEEcCCCc
Confidence 334444444444442 37899999887777642 2345666766666555 44499999999 4455 2
Q ss_pred cccchhhHHHHhhcchhHHHHhhh-ccc----hhh---hhHHHHHHHH---hhcCCEEEEecCCCCCCCCcchHHHHHHH
Q 020081 201 LIGGSDIVLEMQKSGELKKVLAEK-GIT----VEK---ENLEDRLKNL---ITSSPVMLFMKGNPDSPRCGFSSKVVNAL 269 (331)
Q Consensus 201 ~vgg~d~~~~~~~~g~L~~~l~~~-~~~----~~~---~~~~~~~~~~---~~~~~v~vy~k~~p~~~~Cp~C~~a~~~l 269 (331)
.+. +. .......+...+... ... ... +-........ .+...++.|. .|||++|+.....+
T Consensus 114 ~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~-----aPwc~~ck~l~~~~ 184 (383)
T KOG0191|consen 114 PID-YS---GPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFY-----APWCGHCKKLAPEW 184 (383)
T ss_pred eee-cc---CcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEe-----ccccHHhhhcChHH
Confidence 221 11 011111122211111 110 000 1122222222 2333466665 58999999996665
Q ss_pred hhcC------CccEEEEecCCHHHHHHHHhhcCCCCcCEEEE
Q 020081 270 KEEG------VNFGSFDILTDEEVRQGLKVYSNWPTFPQLYH 305 (331)
Q Consensus 270 ~~~~------v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi 305 (331)
++.. ..++...++.+ ....+....+.+.+|++..
T Consensus 185 ~~~a~~~~~~~~v~~~~~d~~--~~~~~~~~~~v~~~Pt~~~ 224 (383)
T KOG0191|consen 185 EKLAKLLKSKENVELGKIDAT--VHKSLASRLEVRGYPTLKL 224 (383)
T ss_pred HHHHHHhccCcceEEEeeccc--hHHHHhhhhcccCCceEEE
Confidence 4433 22222223222 3344566678888888854
No 208
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.96 E-value=2e-05 Score=61.59 Aligned_cols=63 Identities=19% Similarity=0.315 Sum_probs=42.4
Q ss_pred HHHHHHh---cCCCEEEEEecCCCCCCCcchHHHHHHhhc-------CCCCeEEEecCC-CHHHHHHHHhhcCCCCccee
Q 020081 127 SRLESLI---NSSPVMLFMKGKPEEPKCGFSGKVVEILKQ-------GKVDFGSFDILT-DEEVRQGLKVYSNWSSYPQL 195 (331)
Q Consensus 127 ~~~~~~~---~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~~i~~~~~di~~-~~~~~~~l~~~~~~~~vP~i 195 (331)
+.++.++ +..+.+++.++ ++||++|+++.+.|.+ .++.+..+|++. +..+. .+.+++..+|++
T Consensus 9 ~~~~~~~~~~~~~k~vlv~f~---a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~---~~~~~v~~~Pti 82 (109)
T cd02993 9 AEIEALAKGERRNQSTLVVLY---APWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFA---KEELQLKSFPTI 82 (109)
T ss_pred HHHHHHHhhhhcCCCEEEEEE---CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhH---HhhcCCCcCCEE
Confidence 3455555 23455665563 4789999999887765 246677888876 34333 444599999999
No 209
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=97.96 E-value=4.1e-05 Score=54.77 Aligned_cols=64 Identities=14% Similarity=0.125 Sum_probs=48.5
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEEC-CEEeechhhH
Q 020081 17 MLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCK-GELLGGCDIV 86 (331)
Q Consensus 17 vvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~-g~~vgg~~~~ 86 (331)
++|+.. +||+|.+++-+|.++|++|..++++.... ...+.+++...++|.+..+ |..+.....+
T Consensus 2 ~ly~~~-----~~p~~~rv~~~L~~~gl~~e~~~v~~~~~-~~~~~~~np~~~vP~L~~~~g~~l~eS~aI 66 (71)
T cd03060 2 ILYSFR-----RCPYAMRARMALLLAGITVELREVELKNK-PAEMLAASPKGTVPVLVLGNGTVIEESLDI 66 (71)
T ss_pred EEEecC-----CCcHHHHHHHHHHHcCCCcEEEEeCCCCC-CHHHHHHCCCCCCCEEEECCCcEEecHHHH
Confidence 466654 89999999999999999998888864322 2345558889999999985 8776544433
No 210
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.95 E-value=9.8e-06 Score=65.54 Aligned_cols=44 Identities=20% Similarity=0.382 Sum_probs=36.8
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhh
Q 020081 246 VMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVY 294 (331)
Q Consensus 246 v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~ 294 (331)
|+||+ .|+|+.|++|+++|+++|++|+++|+..++-..++|.++
T Consensus 2 i~iY~-----~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~ 45 (131)
T PRK12559 2 VVLYT-----TASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSI 45 (131)
T ss_pred EEEEe-----CCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHH
Confidence 78999 579999999999999999999999998765555555444
No 211
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.94 E-value=2.3e-05 Score=59.71 Aligned_cols=64 Identities=14% Similarity=0.292 Sum_probs=44.9
Q ss_pred HHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc-------C-CCCeEEEecCCCHHHHHHHHhhcCCCCcceeee
Q 020081 127 SRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ-------G-KVDFGSFDILTDEEVRQGLKVYSNWSSYPQLYI 197 (331)
Q Consensus 127 ~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~-~i~~~~~di~~~~~~~~~l~~~~~~~~vP~ifi 197 (331)
+.+++.++..++++..+ |++||++|+.+.+.|+. . ++.+..+|++.++++. ++ +++.++|++++
T Consensus 4 ~~~~~~~~~~~~~~i~f---~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~-~~i~~~P~~~~ 75 (102)
T TIGR01126 4 SNFDDIVLSNKDVLVEF---YAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLA---SR-FGVSGFPTIKF 75 (102)
T ss_pred hhHHHHhccCCcEEEEE---ECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHH---Hh-CCCCcCCEEEE
Confidence 34666666666666666 34789999987666653 1 4778888988877766 33 39999999933
No 212
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.94 E-value=1.8e-05 Score=61.42 Aligned_cols=67 Identities=15% Similarity=0.266 Sum_probs=43.5
Q ss_pred HHHHHHhc-CCCEEEEEecCCCCCCCcchHHHHHHhhc------CCCCeEEEecCC--CHHHHHHHHhhcCCCCcceee-
Q 020081 127 SRLESLIN-SSPVMLFMKGKPEEPKCGFSGKVVEILKQ------GKVDFGSFDILT--DEEVRQGLKVYSNWSSYPQLY- 196 (331)
Q Consensus 127 ~~~~~~~~-~~~vvvf~~~~~~~~~C~~C~~~~~~l~~------~~i~~~~~di~~--~~~~~~~l~~~~~~~~vP~if- 196 (331)
+.+++.+. ..+.++..+ |++||++|+.+.+.|.+ ..+.+..+|++. ++++. .++ ++.++|+++
T Consensus 8 ~~~~~~i~~~~~~~lv~f---~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~---~~~-~i~~~Pt~~~ 80 (109)
T cd03002 8 KNFDKVVHNTNYTTLVEF---YAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLC---GKY-GVQGFPTLKV 80 (109)
T ss_pred hhHHHHHhcCCCeEEEEE---ECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHH---HHc-CCCcCCEEEE
Confidence 34565553 345455555 34799999988777764 245677788877 44444 344 999999993
Q ss_pred -ecCc
Q 020081 197 -IKGE 200 (331)
Q Consensus 197 -i~G~ 200 (331)
.+|.
T Consensus 81 ~~~~~ 85 (109)
T cd03002 81 FRPPK 85 (109)
T ss_pred EeCCC
Confidence 3454
No 213
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.91 E-value=2.6e-05 Score=59.77 Aligned_cols=62 Identities=24% Similarity=0.415 Sum_probs=43.5
Q ss_pred HHHHHHh-cCCCEEEEEecCCCCCCCcchHHHHHHhhc------CCCCeEEEecCCCHHHHHHHHhhcCCCCccee
Q 020081 127 SRLESLI-NSSPVMLFMKGKPEEPKCGFSGKVVEILKQ------GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL 195 (331)
Q Consensus 127 ~~~~~~~-~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~------~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i 195 (331)
+.+++.+ +..+.+++.++ ++||++|+.+.+.|.+ ..+.+..+|+++++++. +++ ++.++|++
T Consensus 8 ~~~~~~i~~~~~~vlv~f~---a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~-~i~~~P~~ 76 (103)
T cd03001 8 SNFDKKVLNSDDVWLVEFY---APWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLA---QQY-GVRGFPTI 76 (103)
T ss_pred HhHHHHHhcCCCcEEEEEE---CCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHH---HHC-CCCccCEE
Confidence 4566655 34553554553 4799999999887754 35678888988877766 344 99999999
No 214
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.89 E-value=2.1e-05 Score=69.38 Aligned_cols=74 Identities=18% Similarity=0.285 Sum_probs=50.8
Q ss_pred chhHHHHHHHHhcC-----CCEEEEEecCCCCCCCcchHHHHHHhhc----C--CCCeEEEecCCCHHHHHHHHhhcCCC
Q 020081 122 SATLTSRLESLINS-----SPVMLFMKGKPEEPKCGFSGKVVEILKQ----G--KVDFGSFDILTDEEVRQGLKVYSNWS 190 (331)
Q Consensus 122 ~~~~~~~~~~~~~~-----~~vvvf~~~~~~~~~C~~C~~~~~~l~~----~--~i~~~~~di~~~~~~~~~l~~~~~~~ 190 (331)
.+-..+.+++++.. .+.++..+ |++||++|+.+.+.+++ . .+.+..+|+++++++. +++ ++.
T Consensus 33 v~Lt~~nF~~~v~~~~~~~~~~vlV~F---yApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~---~~~-~I~ 105 (224)
T PTZ00443 33 VLLNDKNFEKLTQASTGATTGPWFVKF---YAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLA---KRF-AIK 105 (224)
T ss_pred EECCHHHHHHHHhhhcccCCCCEEEEE---ECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHH---HHc-CCC
Confidence 34455667777642 24444555 35899999999888865 2 3567788888777665 343 999
Q ss_pred Cccee--eecCccc
Q 020081 191 SYPQL--YIKGELI 202 (331)
Q Consensus 191 ~vP~i--fi~G~~v 202 (331)
++|++ |.+|+.+
T Consensus 106 ~~PTl~~f~~G~~v 119 (224)
T PTZ00443 106 GYPTLLLFDKGKMY 119 (224)
T ss_pred cCCEEEEEECCEEE
Confidence 99999 5577655
No 215
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.88 E-value=1.5e-05 Score=64.60 Aligned_cols=34 Identities=9% Similarity=0.253 Sum_probs=31.2
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCC
Q 020081 246 VMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTD 284 (331)
Q Consensus 246 v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~ 284 (331)
|+||+ .|+|+.|++|+++|+++|++|+++|+..+
T Consensus 2 i~iY~-----~~~C~~crkA~~~L~~~~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYT-----ISSCTSCKKAKTWLNAHQLSYKEQNLGKE 35 (132)
T ss_pred EEEEe-----CCCCHHHHHHHHHHHHcCCCeEEEECCCC
Confidence 78999 57999999999999999999999999754
No 216
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.87 E-value=2.6e-05 Score=60.21 Aligned_cols=67 Identities=19% Similarity=0.343 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc----C---C--CCeEEEecCCCHHHHHHHHhhcCCCCccee
Q 020081 125 LTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ----G---K--VDFGSFDILTDEEVRQGLKVYSNWSSYPQL 195 (331)
Q Consensus 125 ~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~----~---~--i~~~~~di~~~~~~~~~l~~~~~~~~vP~i 195 (331)
.++.++++.+.. +++..+ |++||++|+.+.+.|++ . + +.+..+|+...+++. .+ +++.++|++
T Consensus 5 ~~~~~~~~~~~~-~vlv~f---~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~---~~-~~I~~~Pt~ 76 (104)
T cd03000 5 LDDSFKDVRKED-IWLVDF---YAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIA---SE-FGVRGYPTI 76 (104)
T ss_pred chhhhhhhccCC-eEEEEE---ECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHH---hh-cCCccccEE
Confidence 346677765544 555555 35799999988777754 1 2 556677887776665 33 499999999
Q ss_pred -eecC
Q 020081 196 -YIKG 199 (331)
Q Consensus 196 -fi~G 199 (331)
+++|
T Consensus 77 ~l~~~ 81 (104)
T cd03000 77 KLLKG 81 (104)
T ss_pred EEEcC
Confidence 4444
No 217
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.87 E-value=1.5e-05 Score=62.23 Aligned_cols=68 Identities=16% Similarity=0.292 Sum_probs=36.1
Q ss_pred CCCChhHHHHHHHHHhC---------CCCeEEEEecCCH--------------------HHHHHHhhhhCCCcccEEEEC
Q 020081 26 EPKCGFSRQVVDILKDE---------KVEFGSFNILSDN--------------------EVREGLKKFSNWPTFPQLYCK 76 (331)
Q Consensus 26 ~~~C~~C~~~~~~l~~~---------~i~~~~vdi~~~~--------------------~~~~~~~~~~~~~t~P~ifi~ 76 (331)
+||||+|+++.+.+... ++.+..++++.+. ++...++ ++|.||+ +|.+
T Consensus 14 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-v~gtPt~--~~~d 90 (112)
T PF13098_consen 14 DPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYG-VNGTPTI--VFLD 90 (112)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT---SSSEE--EECT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcC-CCccCEE--EEEc
Confidence 35999999997766631 3556666775432 2444444 6677776 4444
Q ss_pred --CEEeechhhHHhhhcccchHHHH
Q 020081 77 --GELLGGCDIVIAMHKSGELKDVF 99 (331)
Q Consensus 77 --g~~vgg~~~~~~~~~~~~l~~~l 99 (331)
|+.+..+.|... ..+|.++|
T Consensus 91 ~~G~~v~~~~G~~~---~~~l~~~L 112 (112)
T PF13098_consen 91 KDGKIVYRIPGYLS---PEELLKML 112 (112)
T ss_dssp TTSCEEEEEESS-----HHHHHHHH
T ss_pred CCCCEEEEecCCCC---HHHHHhhC
Confidence 886654444433 34455543
No 218
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.86 E-value=5.7e-05 Score=55.74 Aligned_cols=53 Identities=25% Similarity=0.385 Sum_probs=42.9
Q ss_pred CEEEEEecCCCCCCChhHHHHHHHHHhC----CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECC
Q 020081 15 PVMLFMKGTPEEPKCGFSRQVVDILKDE----KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKG 77 (331)
Q Consensus 15 ~vvvf~~~~~~~~~C~~C~~~~~~l~~~----~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g 77 (331)
++++|++. +|+-|..++.+|... ++.+..+||++++++...++ ..+|++.++|
T Consensus 1 ~l~l~~k~-----~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~-----~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKP-----GCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYG-----YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-S-----SSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSC-----TSTSEEEETT
T ss_pred CEEEEcCC-----CCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhc-----CCCCEEEEcC
Confidence 47888875 899999999999975 46689999999988666554 3689999999
No 219
>PLN02309 5'-adenylylsulfate reductase
Probab=97.85 E-value=3.5e-05 Score=74.77 Aligned_cols=70 Identities=20% Similarity=0.389 Sum_probs=51.8
Q ss_pred HHHHHHHh---hCCCEEEEEecCCCCCCChhHHHHHHHHHhC-------CCCeEEEEec-CCHHHHH-HHhhhhCCCccc
Q 020081 4 KSRLQQLL---DSHPVMLFMKGTPEEPKCGFSRQVVDILKDE-------KVEFGSFNIL-SDNEVRE-GLKKFSNWPTFP 71 (331)
Q Consensus 4 ~~~~~~~i---~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-------~i~~~~vdi~-~~~~~~~-~~~~~~~~~t~P 71 (331)
.+.|++++ +.++.++..+ ++|||++|+.+.+.|.++ ++.|..+|++ .+.++.. .++ +.+.||+
T Consensus 352 ~~nfe~ll~~~~~~k~vlV~F---yApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~-I~~~PTi- 426 (457)
T PLN02309 352 RAGIENLLKLENRKEPWLVVL---YAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQ-LGSFPTI- 426 (457)
T ss_pred HHHHHHHHHhhcCCCeEEEEE---ECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCC-CceeeEE-
Confidence 35666665 3555555554 367999999999988774 4778999998 6666665 466 8999999
Q ss_pred EEEECCE
Q 020081 72 QLYCKGE 78 (331)
Q Consensus 72 ~ifi~g~ 78 (331)
.+|.+|.
T Consensus 427 l~f~~g~ 433 (457)
T PLN02309 427 LLFPKNS 433 (457)
T ss_pred EEEeCCC
Confidence 8998774
No 220
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.84 E-value=8.6e-05 Score=59.43 Aligned_cols=78 Identities=9% Similarity=0.087 Sum_probs=48.5
Q ss_pred HHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHH-HHHh------C--CCCeEEEEecCCHHHHHHHh-------hhhCC
Q 020081 4 KSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVD-ILKD------E--KVEFGSFNILSDNEVREGLK-------KFSNW 67 (331)
Q Consensus 4 ~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~-~l~~------~--~i~~~~vdi~~~~~~~~~~~-------~~~~~ 67 (331)
.+.++++.++++.|+..++ +.||++|+++.+ .+.. + +..+..+|+++.++++..+. .+.|.
T Consensus 5 ~eal~~Ak~~~KpVll~f~---a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~ 81 (124)
T cd02955 5 EEAFEKARREDKPIFLSIG---YSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGW 81 (124)
T ss_pred HHHHHHHHHcCCeEEEEEc---cCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCC
Confidence 3567888888874444443 469999999964 3443 2 34456677777777665442 24577
Q ss_pred CcccEEE-ECCEEeechhh
Q 020081 68 PTFPQLY-CKGELLGGCDI 85 (331)
Q Consensus 68 ~t~P~if-i~g~~vgg~~~ 85 (331)
||+ .++ -+|+.+.+...
T Consensus 82 Pt~-vfl~~~G~~~~~~~~ 99 (124)
T cd02955 82 PLN-VFLTPDLKPFFGGTY 99 (124)
T ss_pred CEE-EEECCCCCEEeeeee
Confidence 777 333 26888865543
No 221
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=97.83 E-value=1.7e-05 Score=61.60 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=31.5
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCH
Q 020081 246 VMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDE 285 (331)
Q Consensus 246 v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~ 285 (331)
|++|+ .|+|+.|++|+++|+++|++|+++|+..++
T Consensus 1 i~iy~-----~~~C~~crka~~~L~~~~i~~~~~di~~~p 35 (105)
T cd03035 1 ITLYG-----IKNCDTVKKARKWLEARGVAYTFHDYRKDG 35 (105)
T ss_pred CEEEe-----CCCCHHHHHHHHHHHHcCCCeEEEecccCC
Confidence 57899 579999999999999999999999997653
No 222
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=97.83 E-value=3.7e-05 Score=61.00 Aligned_cols=48 Identities=13% Similarity=0.137 Sum_probs=32.6
Q ss_pred CCCcchHHHHHHhhc----C--CCCeEEEecCCCHH---HHHHHHhhcCCC-Ccceee
Q 020081 149 PKCGFSGKVVEILKQ----G--KVDFGSFDILTDEE---VRQGLKVYSNWS-SYPQLY 196 (331)
Q Consensus 149 ~~C~~C~~~~~~l~~----~--~i~~~~~di~~~~~---~~~~l~~~~~~~-~vP~if 196 (331)
+|||+|+.+.+.|++ . ++.|..+|++..+. ....+...+++. ++||++
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~ 95 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLL 95 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEE
Confidence 689999988887754 2 57888999876431 112222333888 999993
No 223
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=97.82 E-value=0.00013 Score=52.29 Aligned_cols=58 Identities=19% Similarity=0.125 Sum_probs=49.2
Q ss_pred CCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHHHc
Q 020081 257 PRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKDN 322 (331)
Q Consensus 257 ~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~~~ 322 (331)
..||+|.+++.+|+.+|++|+.+++.... .+....+|++..+|+.+.+...+.++.++
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~~p~g~vP~l~~~g~~l~es~~I~~yL~~ 71 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNPW--------RSPTGKLPFLELNGEKIADSEKIIEYLKK 71 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCcc--------cCCCcccCEEEECCEEEcCHHHHHHHHhh
Confidence 47999999999999999999999986432 45667899999999999999888877553
No 224
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=97.82 E-value=0.00014 Score=54.76 Aligned_cols=76 Identities=22% Similarity=0.322 Sum_probs=58.7
Q ss_pred CEEEEecCCCCC---CCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHHH
Q 020081 245 PVMLFMKGNPDS---PRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKD 321 (331)
Q Consensus 245 ~v~vy~k~~p~~---~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~~ 321 (331)
.+.+|.|.++.. ..||||++++-.|..+|++|+.++++.... -+.+.+..-...+|++..+|..+..-+.+.++.+
T Consensus 5 ~~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~-p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLd 83 (91)
T cd03061 5 EIELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRK-PEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLE 83 (91)
T ss_pred cEEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCCC-CHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHH
Confidence 467776655443 359999999999999999999998864321 1346677767789999999999988888877765
No 225
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.82 E-value=4.7e-05 Score=58.18 Aligned_cols=68 Identities=19% Similarity=0.305 Sum_probs=46.5
Q ss_pred HHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc----C-----CCCeEEEecCCCHHHHHHHHhhcCCCCccee--
Q 020081 127 SRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ----G-----KVDFGSFDILTDEEVRQGLKVYSNWSSYPQL-- 195 (331)
Q Consensus 127 ~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~----~-----~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i-- 195 (331)
+.+++.+++.+++| .+ |++||++|+.+.+.+++ . ++.+..+|.+.++.+. ++ +++.++|++
T Consensus 8 ~~f~~~~~~~~~lv-~f---~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~---~~-~~v~~~Pt~~~ 79 (102)
T cd03005 8 DNFDHHIAEGNHFV-KF---FAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELC---SE-FQVRGYPTLLL 79 (102)
T ss_pred HHHHHHhhcCCEEE-EE---ECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhH---hh-cCCCcCCEEEE
Confidence 45776666666444 44 34799999988777754 1 4667888888777665 33 399999998
Q ss_pred eecCccc
Q 020081 196 YIKGELI 202 (331)
Q Consensus 196 fi~G~~v 202 (331)
|.+|+.+
T Consensus 80 ~~~g~~~ 86 (102)
T cd03005 80 FKDGEKV 86 (102)
T ss_pred EeCCCee
Confidence 4466543
No 226
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.81 E-value=5.4e-05 Score=65.37 Aligned_cols=67 Identities=9% Similarity=0.099 Sum_probs=45.7
Q ss_pred HHHHHHhcCC--CEEEEEecCCCCCCCcchHHHHHHhhc-----CCCCeEEEecCCCHHHHHHHHhhcCCCCccee--ee
Q 020081 127 SRLESLINSS--PVMLFMKGKPEEPKCGFSGKVVEILKQ-----GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL--YI 197 (331)
Q Consensus 127 ~~~~~~~~~~--~vvvf~~~~~~~~~C~~C~~~~~~l~~-----~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i--fi 197 (331)
+.+.++.+.. ..+|..+ |++||+.|+.+.+.|++ ..+.|..+|++.. . ..+++..+|++ |.
T Consensus 91 ~f~~eV~~as~~~~VVV~F---ya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~------~-~~~~i~~lPTlliyk 160 (192)
T cd02988 91 DYVREVTEASKDTWVVVHL---YKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC------I-PNYPDKNLPTILVYR 160 (192)
T ss_pred HHHHHHHhcCCCCEEEEEE---ECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh------H-hhCCCCCCCEEEEEE
Confidence 3444555443 3555555 34799999999888875 3577888887532 2 33499999999 67
Q ss_pred cCcccc
Q 020081 198 KGELIG 203 (331)
Q Consensus 198 ~G~~vg 203 (331)
||+.++
T Consensus 161 ~G~~v~ 166 (192)
T cd02988 161 NGDIVK 166 (192)
T ss_pred CCEEEE
Confidence 887663
No 227
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.80 E-value=2.5e-05 Score=61.34 Aligned_cols=43 Identities=23% Similarity=0.475 Sum_probs=34.9
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhh
Q 020081 16 VMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKK 63 (331)
Q Consensus 16 vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~ 63 (331)
+.||+.. +|++|++++.+|+++|++|..+|+.+++..+..+.+
T Consensus 1 i~iY~~~-----~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~ 43 (111)
T cd03036 1 LKFYEYP-----KCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKK 43 (111)
T ss_pred CEEEECC-----CCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHH
Confidence 4677765 999999999999999999999999877544444443
No 228
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=97.79 E-value=3.8e-05 Score=68.88 Aligned_cols=55 Identities=13% Similarity=0.295 Sum_probs=43.2
Q ss_pred CCCCCChhHHHHHHHHHhCCCC---------eEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEe
Q 020081 24 PEEPKCGFSRQVVDILKDEKVE---------FGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELL 80 (331)
Q Consensus 24 ~~~~~C~~C~~~~~~l~~~~i~---------~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~v 80 (331)
++||||.+|+++.+++++.|.+ .-..|...-+.+++.+. +.|.||+ .+|.||-.+
T Consensus 50 FYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefg-iqGYPTI-k~~kgd~a~ 113 (468)
T KOG4277|consen 50 FYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFG-IQGYPTI-KFFKGDHAI 113 (468)
T ss_pred eechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhc-cCCCceE-EEecCCeee
Confidence 4678999999999999996543 34455566699999999 9999999 677666544
No 229
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=97.79 E-value=0.00011 Score=52.54 Aligned_cols=66 Identities=21% Similarity=0.300 Sum_probs=48.8
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechhhHHh
Q 020081 17 MLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIA 88 (331)
Q Consensus 17 vvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~~ 88 (331)
++|+.. +||+|++++.+|+.+|++|..++++.... ...+.+++...++|.+..+|..+.....+..
T Consensus 2 ~ly~~~-----~~~~~~~v~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~ 67 (73)
T cd03059 2 TLYSGP-----DDVYSHRVRIVLAEKGVSVEIIDVDPDNP-PEDLAELNPYGTVPTLVDRDLVLYESRIIME 67 (73)
T ss_pred EEEECC-----CChhHHHHHHHHHHcCCccEEEEcCCCCC-CHHHHhhCCCCCCCEEEECCEEEEcHHHHHH
Confidence 466654 89999999999999999999888764422 2345557788899999888876655544433
No 230
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.76 E-value=7e-05 Score=60.25 Aligned_cols=90 Identities=12% Similarity=0.227 Sum_probs=68.0
Q ss_pred HHHHHhhCCC-EEEEEecCCCCCCChhHHHHHHHHHhC----C---CCeEEEEecCCHHHHHHHhhhhCCCcccEEEECC
Q 020081 6 RLQQLLDSHP-VMLFMKGTPEEPKCGFSRQVVDILKDE----K---VEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKG 77 (331)
Q Consensus 6 ~~~~~i~~~~-vvvf~~~~~~~~~C~~C~~~~~~l~~~----~---i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g 77 (331)
.+.+.+..+. .|+|..++| -.+|-+..+.-+|.++ + +.+..+|++++++++..++ +.++||+ .+|.||
T Consensus 26 ~~~~~~~~~~~~vl~~~gdp--~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fg-V~siPTL-l~FkdG 101 (132)
T PRK11509 26 RLDDWLTQAPDGVVLLSSDP--KRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFG-VFRFPAT-LVFTGG 101 (132)
T ss_pred cHHHHHhCCCcEEEEeCCCC--CcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcC-CccCCEE-EEEECC
Confidence 4556665553 677765544 3567777666555552 2 6799999999999999999 9999999 999999
Q ss_pred EEeechhhHHhhhcccchHHHHHhc
Q 020081 78 ELLGGCDIVIAMHKSGELKDVFRDH 102 (331)
Q Consensus 78 ~~vgg~~~~~~~~~~~~l~~~l~~~ 102 (331)
+.++...+.+.+ .+|.+.|+.+
T Consensus 102 k~v~~i~G~~~k---~~l~~~I~~~ 123 (132)
T PRK11509 102 NYRGVLNGIHPW---AELINLMRGL 123 (132)
T ss_pred EEEEEEeCcCCH---HHHHHHHHHH
Confidence 999988776553 6677777766
No 231
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.75 E-value=3.6e-05 Score=59.77 Aligned_cols=45 Identities=20% Similarity=0.459 Sum_probs=36.0
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhh
Q 020081 16 VMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFS 65 (331)
Q Consensus 16 vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~ 65 (331)
++||+.. +|++|++++.+|+++|++|..+|+.+++...+.+.++.
T Consensus 1 i~iY~~~-----~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~ 45 (105)
T cd02977 1 ITIYGNP-----NCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELL 45 (105)
T ss_pred CEEEECC-----CCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHH
Confidence 4677765 99999999999999999999999987754445555443
No 232
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.74 E-value=8.1e-05 Score=56.09 Aligned_cols=64 Identities=19% Similarity=0.334 Sum_probs=43.0
Q ss_pred HHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc--------CCCCeEEEecCCCHHHHHHHHhhcCCCCcceeee
Q 020081 127 SRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ--------GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQLYI 197 (331)
Q Consensus 127 ~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~--------~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~ifi 197 (331)
+.+.+.+.+.+.++..++ ++||++|+.+.+.+.+ .++.+..+|...+..+. ++ +++..+|++++
T Consensus 6 ~~~~~~i~~~~~~~v~f~---~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~-~~i~~~Pt~~~ 77 (101)
T cd02961 6 DNFDELVKDSKDVLVEFY---APWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLC---SE-YGVRGYPTIKL 77 (101)
T ss_pred HHHHHHHhCCCcEEEEEE---CCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHH---Hh-CCCCCCCEEEE
Confidence 357777766644444442 3789999988777754 24567778877766655 33 39999999933
No 233
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.74 E-value=3.4e-05 Score=60.74 Aligned_cols=34 Identities=21% Similarity=0.479 Sum_probs=31.2
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCC
Q 020081 246 VMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTD 284 (331)
Q Consensus 246 v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~ 284 (331)
|++|+ .|.|+.|++|+++|+++|++|+++|+..+
T Consensus 2 i~iy~-----~p~C~~crkA~~~L~~~gi~~~~~d~~~~ 35 (113)
T cd03033 2 IIFYE-----KPGCANNARQKALLEAAGHEVEVRDLLTE 35 (113)
T ss_pred EEEEE-----CCCCHHHHHHHHHHHHcCCCcEEeehhcC
Confidence 78999 57999999999999999999999999754
No 234
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.74 E-value=7.5e-05 Score=72.89 Aligned_cols=70 Identities=20% Similarity=0.408 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc-------C--CCCeEEEecCCCHHHHHHHHhhcCCCCccee
Q 020081 125 LTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ-------G--KVDFGSFDILTDEEVRQGLKVYSNWSSYPQL 195 (331)
Q Consensus 125 ~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~--~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i 195 (331)
..+.++++++.+++++..+ |++||++|+.+.+.+.+ . ++.+..+|++.+.++. +++ ++.++|++
T Consensus 7 ~~~~~~~~i~~~~~~~v~f---~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~---~~~-~i~~~Pt~ 79 (462)
T TIGR01130 7 TKDNFDDFIKSHEFVLVEF---YAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLA---QKY-GVSGYPTL 79 (462)
T ss_pred CHHHHHHHHhcCCCEEEEE---ECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHH---HhC-CCccccEE
Confidence 4456788888887766666 45799999988766643 2 3778899998887766 333 99999999
Q ss_pred --eecCcc
Q 020081 196 --YIKGEL 201 (331)
Q Consensus 196 --fi~G~~ 201 (331)
|.+|+.
T Consensus 80 ~~~~~g~~ 87 (462)
T TIGR01130 80 KIFRNGED 87 (462)
T ss_pred EEEeCCcc
Confidence 556765
No 235
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.71 E-value=5.9e-05 Score=57.78 Aligned_cols=63 Identities=17% Similarity=0.338 Sum_probs=41.7
Q ss_pred HHHHHhcC-CCEEEEEecCCCCCCCcchHHHHHHhhc--------CCCCeEEEecCC-CHHHHHHHHhhcCCCCcceeee
Q 020081 128 RLESLINS-SPVMLFMKGKPEEPKCGFSGKVVEILKQ--------GKVDFGSFDILT-DEEVRQGLKVYSNWSSYPQLYI 197 (331)
Q Consensus 128 ~~~~~~~~-~~vvvf~~~~~~~~~C~~C~~~~~~l~~--------~~i~~~~~di~~-~~~~~~~l~~~~~~~~vP~ifi 197 (331)
.+++++.+ .+.++..+ |++||++|+++.+.+.+ .++.+..+|... ++.+. +++ ++.++|++++
T Consensus 9 ~~~~~~~~~~~~~~v~f---~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~---~~~-~i~~~P~~~~ 81 (105)
T cd02998 9 NFDKVVGDDKKDVLVEF---YAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLA---KKY-GVSGFPTLKF 81 (105)
T ss_pred cHHHHhcCCCCcEEEEE---ECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhH---HhC-CCCCcCEEEE
Confidence 45555553 33444444 34799999988777754 235677788877 66665 344 9999999943
No 236
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.70 E-value=8e-05 Score=74.90 Aligned_cols=73 Identities=7% Similarity=0.116 Sum_probs=46.3
Q ss_pred CCCCChhHHHHHHHH-H------h-CCCCeEEEEecCC----HHHHHHHhhhhCCCcccEEEE-CCEEe--echhhHHhh
Q 020081 25 EEPKCGFSRQVVDIL-K------D-EKVEFGSFNILSD----NEVREGLKKFSNWPTFPQLYC-KGELL--GGCDIVIAM 89 (331)
Q Consensus 25 ~~~~C~~C~~~~~~l-~------~-~~i~~~~vdi~~~----~~~~~~~~~~~~~~t~P~ifi-~g~~v--gg~~~~~~~ 89 (331)
|++||++|+.+++.. . . .++.+..+|++++ .++.+.++ +.+.||+ .+|. +|+.+ ....+..
T Consensus 482 ~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~-v~g~Pt~-~~~~~~G~~i~~~r~~G~~-- 557 (571)
T PRK00293 482 YADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYN-VLGLPTI-LFFDAQGQEIPDARVTGFM-- 557 (571)
T ss_pred ECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcC-CCCCCEE-EEECCCCCCcccccccCCC--
Confidence 467999999987642 1 1 2567888898754 45566666 7888988 6664 67763 2222221
Q ss_pred hcccchHHHHHhc
Q 020081 90 HKSGELKDVFRDH 102 (331)
Q Consensus 90 ~~~~~l~~~l~~~ 102 (331)
...++.+.|++.
T Consensus 558 -~~~~f~~~L~~~ 569 (571)
T PRK00293 558 -DAAAFAAHLRQL 569 (571)
T ss_pred -CHHHHHHHHHHh
Confidence 135577776654
No 237
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.68 E-value=0.00011 Score=71.32 Aligned_cols=77 Identities=17% Similarity=0.249 Sum_probs=52.5
Q ss_pred cccchhHHHHHHHHhc---CCCEEEEEecCCCCCCCcchHHHHHHhhc-------CCCCeEEEecCCCHHHHHHHHhhcC
Q 020081 119 TGLSATLTSRLESLIN---SSPVMLFMKGKPEEPKCGFSGKVVEILKQ-------GKVDFGSFDILTDEEVRQGLKVYSN 188 (331)
Q Consensus 119 ~~~~~~~~~~~~~~~~---~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~~i~~~~~di~~~~~~~~~l~~~~~ 188 (331)
..+.+-..+.|+++++ ..+++|+.| |+|||++|+.+.+.|++ .++.+..+|++.+.. +.+...++
T Consensus 351 ~~Vv~L~~~nf~~~v~~~~~~k~VLV~F---yApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~~~~~~~~ 425 (463)
T TIGR00424 351 NNVVSLSRPGIENLLKLEERKEAWLVVL---YAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--EFAKQELQ 425 (463)
T ss_pred CCeEECCHHHHHHHHhhhcCCCeEEEEE---ECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--HHHHHHcC
Confidence 3444445567887764 677777777 45789999999888865 246788889886632 11223349
Q ss_pred CCCccee--eecCc
Q 020081 189 WSSYPQL--YIKGE 200 (331)
Q Consensus 189 ~~~vP~i--fi~G~ 200 (331)
+.++|++ |.+|.
T Consensus 426 I~~~PTii~Fk~g~ 439 (463)
T TIGR00424 426 LGSFPTILFFPKHS 439 (463)
T ss_pred CCccceEEEEECCC
Confidence 9999999 55663
No 238
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=97.68 E-value=0.0003 Score=50.59 Aligned_cols=69 Identities=23% Similarity=0.204 Sum_probs=52.0
Q ss_pred EEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcC-CCCcCEEEECCeEEeeHHHHHHHHH
Q 020081 247 MLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSN-WPTFPQLYHKGELIGGCDIVMELKD 321 (331)
Q Consensus 247 ~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g-~~~vP~ifi~g~~igg~~~~~~~~~ 321 (331)
.+|. .+.||+|.+++-+|+..|++|+.++++.. ....++.+... ...+|.+..+|..+.....+.++.+
T Consensus 2 ~Ly~-----~~~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~ 71 (74)
T cd03058 2 KLLG-----AWASPFVLRVRIALALKGVPYEYVEEDLG-NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYID 71 (74)
T ss_pred EEEE-----CCCCchHHHHHHHHHHcCCCCEEEEeCcc-cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHH
Confidence 4676 46899999999999999999999887543 21233455554 4799999998888887777766543
No 239
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=97.67 E-value=0.00027 Score=53.04 Aligned_cols=68 Identities=13% Similarity=0.186 Sum_probs=51.5
Q ss_pred CCEEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEEC-CEEeechhhHH
Q 020081 14 HPVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCK-GELLGGCDIVI 87 (331)
Q Consensus 14 ~~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~-g~~vgg~~~~~ 87 (331)
..+.+|+.. .||+|++++-+|..+|++|..++++.... ...+.+++...++|++..+ |..+.....+.
T Consensus 17 ~~~~Ly~~~-----~sp~~~kv~~~L~~~gl~~~~~~v~~~~~-~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~ 85 (89)
T cd03055 17 GIIRLYSMR-----FCPYAQRARLVLAAKNIPHEVININLKDK-PDWFLEKNPQGKVPALEIDEGKVVYESLIIC 85 (89)
T ss_pred CcEEEEeCC-----CCchHHHHHHHHHHcCCCCeEEEeCCCCC-cHHHHhhCCCCCcCEEEECCCCEEECHHHHH
Confidence 347888765 79999999999999999999888864321 2345557888999999987 77776554443
No 240
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=97.66 E-value=0.00035 Score=50.39 Aligned_cols=71 Identities=13% Similarity=0.132 Sum_probs=56.6
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCC--HHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHHH
Q 020081 246 VMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTD--EEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKD 321 (331)
Q Consensus 246 v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~--~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~~ 321 (331)
+.+|. .+.||+|.+++-+|...|++|+.+.+... ....+.+.+......+|++..+|..+.....+.++.+
T Consensus 2 ~~Ly~-----~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~ 74 (76)
T cd03053 2 LKLYG-----AAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLA 74 (76)
T ss_pred eEEEe-----CCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 46787 56899999999999999999999887642 2233557777888899999999988887777776654
No 241
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=97.66 E-value=0.00017 Score=52.17 Aligned_cols=60 Identities=18% Similarity=0.288 Sum_probs=49.7
Q ss_pred CChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechhhHHh
Q 020081 28 KCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIA 88 (331)
Q Consensus 28 ~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~~ 88 (331)
+||+|++++-.|+.+|++|..++++.... ...+.+.+...++|++..+|..+.....+..
T Consensus 6 ~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~ 65 (75)
T PF13417_consen 6 GSPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLNPKGKVPVLVDDGEVLTDSAAIIE 65 (75)
T ss_dssp TSHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHSTTSBSSEEEETTEEEESHHHHHH
T ss_pred CChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhcccccceEEEECCEEEeCHHHHHH
Confidence 89999999999999999999999875433 4555668889999999999998877665544
No 242
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=97.65 E-value=0.00023 Score=51.05 Aligned_cols=65 Identities=17% Similarity=0.121 Sum_probs=48.8
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecC--CHHHHHHHhhhhCCCcccEEEECCEEeechhhH
Q 020081 17 MLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILS--DNEVREGLKKFSNWPTFPQLYCKGELLGGCDIV 86 (331)
Q Consensus 17 vvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~--~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~ 86 (331)
.+|+.. +|++|++++-+|+.+|++|..++++. .......+.+++...++|.+..+|..+.....+
T Consensus 2 ~Ly~~~-----~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI 68 (74)
T cd03045 2 DLYYLP-----GSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAI 68 (74)
T ss_pred EEEeCC-----CCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHH
Confidence 356543 89999999999999999999888763 333345566688888999998888766554433
No 243
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.64 E-value=0.00021 Score=57.24 Aligned_cols=73 Identities=8% Similarity=0.086 Sum_probs=48.0
Q ss_pred HHHHHhcCCCEEEEEecCCCCCCCcchHHHHH-Hhhc--------CCCCeEEEecCCCHHHHHHH----HhhcCCCCcce
Q 020081 128 RLESLINSSPVMLFMKGKPEEPKCGFSGKVVE-ILKQ--------GKVDFGSFDILTDEEVRQGL----KVYSNWSSYPQ 194 (331)
Q Consensus 128 ~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~-~l~~--------~~i~~~~~di~~~~~~~~~l----~~~~~~~~vP~ 194 (331)
.+++..+.++.++..++ ++||++|+.+.+ .+.. .++.+..+|+++.+++.+.+ +.++|+.++|+
T Consensus 7 al~~Ak~~~KpVll~f~---a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 7 AFEKARREDKPIFLSIG---YSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred HHHHHHHcCCeEEEEEc---cCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence 46777776665555564 378999998864 4443 23445667887776665433 33469999999
Q ss_pred e-ee--cCcccc
Q 020081 195 L-YI--KGELIG 203 (331)
Q Consensus 195 i-fi--~G~~vg 203 (331)
+ |+ +|+.+.
T Consensus 84 ~vfl~~~G~~~~ 95 (124)
T cd02955 84 NVFLTPDLKPFF 95 (124)
T ss_pred EEEECCCCCEEe
Confidence 9 44 477773
No 244
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=97.62 E-value=0.00032 Score=50.56 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=54.2
Q ss_pred EEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCC--HHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHH
Q 020081 247 MLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTD--EEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMEL 319 (331)
Q Consensus 247 ~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~--~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~ 319 (331)
++|. .+.||+|.+++-+|+++|++|+.+.++.. .....++.+......||++..||..+.....+.++
T Consensus 2 ~ly~-----~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~y 71 (73)
T cd03052 2 VLYH-----WTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDY 71 (73)
T ss_pred EEec-----CCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence 5677 56899999999999999999999987542 22335677888889999999999888776666554
No 245
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.61 E-value=0.00015 Score=55.61 Aligned_cols=62 Identities=13% Similarity=0.176 Sum_probs=48.1
Q ss_pred CCCEEEEEecCCCCCCChhHHHHHHHHHhC------CCCeEEEEecCCHHHHHHHhhhh--CCCcccEEEEC--CEEe
Q 020081 13 SHPVMLFMKGTPEEPKCGFSRQVVDILKDE------KVEFGSFNILSDNEVREGLKKFS--NWPTFPQLYCK--GELL 80 (331)
Q Consensus 13 ~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~--~~~t~P~ifi~--g~~v 80 (331)
..+++++.. ++||++|+.+++.|++. .+.|..+|+++++.+.+.++ +. +.|++ .+|.+ |+..
T Consensus 12 ~~~~~~~f~----~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~-i~~~~~P~~-~~~~~~~~~k~ 83 (103)
T cd02982 12 GKPLLVLFY----NKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFG-LKEEDLPVI-AIINLSDGKKY 83 (103)
T ss_pred CCCEEEEEE----cCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcC-CChhhCCEE-EEEeccccccc
Confidence 344555442 35999999999999884 47899999999899999988 77 88988 78887 5444
No 246
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=97.59 E-value=0.00064 Score=48.89 Aligned_cols=70 Identities=14% Similarity=0.159 Sum_probs=56.0
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHHH
Q 020081 246 VMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKD 321 (331)
Q Consensus 246 v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~~ 321 (331)
+++|. .+.|+.|.+++-+|...|++|+.+.++. ....+++........+|++..||..+.....+.++..
T Consensus 2 ~~Ly~-----~~~~~~~~~v~~~L~~~~i~~e~~~v~~-~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 71 (73)
T cd03076 2 YTLTY-----FPVRGRAEAIRLLLADQGISWEEERVTY-EEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLG 71 (73)
T ss_pred cEEEE-----eCCcchHHHHHHHHHHcCCCCEEEEecH-HHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 46666 3479999999999999999999998864 3334456677778899999999999988887777654
No 247
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.58 E-value=0.00015 Score=58.73 Aligned_cols=44 Identities=25% Similarity=0.403 Sum_probs=36.6
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhh
Q 020081 16 VMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKF 64 (331)
Q Consensus 16 vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~ 64 (331)
+.||+.. +|++|++++.+|+++||+|..+|+.+++..++.+.++
T Consensus 2 i~iY~~~-----~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~ 45 (131)
T PRK01655 2 VTLFTSP-----SCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQI 45 (131)
T ss_pred EEEEeCC-----CChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHH
Confidence 5688765 9999999999999999999999998886555555543
No 248
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=97.58 E-value=0.00025 Score=50.60 Aligned_cols=57 Identities=12% Similarity=0.075 Sum_probs=42.8
Q ss_pred CChhHHHHHHHHHhCCCCeEEEEecCC--HHHHHHHhhhhCCCcccEEEE-CCEEeechh
Q 020081 28 KCGFSRQVVDILKDEKVEFGSFNILSD--NEVREGLKKFSNWPTFPQLYC-KGELLGGCD 84 (331)
Q Consensus 28 ~C~~C~~~~~~l~~~~i~~~~vdi~~~--~~~~~~~~~~~~~~t~P~ifi-~g~~vgg~~ 84 (331)
+|++|++++-+|..++++|..+.++.. ......+.+++...++|.+.. +|..+....
T Consensus 8 ~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~ 67 (74)
T cd03051 8 TAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESV 67 (74)
T ss_pred CCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHH
Confidence 899999999999999999988777532 222344566888889999986 566554444
No 249
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.56 E-value=0.00012 Score=57.16 Aligned_cols=64 Identities=13% Similarity=0.267 Sum_probs=35.1
Q ss_pred CCEEEEEecCCCCCCCcchHHHHHHhhc---------CCCCeEEEecCCCHH----------------HHHHHHhhcCCC
Q 020081 136 SPVMLFMKGKPEEPKCGFSGKVVEILKQ---------GKVDFGSFDILTDEE----------------VRQGLKVYSNWS 190 (331)
Q Consensus 136 ~~vvvf~~~~~~~~~C~~C~~~~~~l~~---------~~i~~~~~di~~~~~----------------~~~~l~~~~~~~ 190 (331)
.+.+|+.++ +||||||+++.+.+.. .++.+..+++..+.. ....+.+.+|+.
T Consensus 5 ~k~~v~~F~---~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 81 (112)
T PF13098_consen 5 GKPIVVVFT---DPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN 81 (112)
T ss_dssp SSEEEEEEE----TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred CCEEEEEEE---CCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence 344444443 3789999988766652 134455666654321 122344555999
Q ss_pred Cccee-eec--Cccc
Q 020081 191 SYPQL-YIK--GELI 202 (331)
Q Consensus 191 ~vP~i-fi~--G~~v 202 (331)
+.|++ |++ |+.+
T Consensus 82 gtPt~~~~d~~G~~v 96 (112)
T PF13098_consen 82 GTPTIVFLDKDGKIV 96 (112)
T ss_dssp SSSEEEECTTTSCEE
T ss_pred ccCEEEEEcCCCCEE
Confidence 99999 555 6644
No 250
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0038 Score=57.84 Aligned_cols=181 Identities=17% Similarity=0.267 Sum_probs=106.5
Q ss_pred hHHHHHHHHhhC--CCEEEE-EecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCE
Q 020081 2 LLKSRLQQLLDS--HPVMLF-MKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGE 78 (331)
Q Consensus 2 ~~~~~~~~~i~~--~~vvvf-~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~ 78 (331)
++|+++.+.+.. .++.+. +-+ ...-++.++.+|++..--...+-+..+.. ....|+| .|-.-|.
T Consensus 5 ~lKaQL~~yl~~l~~~i~l~asld-----ds~~s~~~~~ll~eia~~S~kis~~~~~~-------~~RkpSF-~i~r~g~ 71 (520)
T COG3634 5 NLKAQLKAYLELLEQPIELVASLD-----DSEKSKEIKELLDEIASLSDKISLEEDSD-------LVRKPSF-SINRPGE 71 (520)
T ss_pred hHHHHHHHHHHHhcCCeEEEEecC-----cccccHHHHHHHHHHHhhccceeeeecCc-------cccCCce-eecCCCc
Confidence 355555554432 333333 433 46778899999998632223333322211 1235666 5555565
Q ss_pred Eee-chhhHHhhhcccchHHHHHhcCcccccCCCCCCCCCCcccchhHHHHHHHHhcCCCEEEEEecCCCCCCCcchHHH
Q 020081 79 LLG-GCDIVIAMHKSGELKDVFRDHGIETVGGSGKSGISESTGLSATLTSRLESLINSSPVMLFMKGKPEEPKCGFSGKV 157 (331)
Q Consensus 79 ~vg-g~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~ 157 (331)
..| .|.++.-.|+-..|.-.|-..| | .++...+++-++++.+-.+-..--|.. -+|..|..+
T Consensus 72 ~~gv~FAglPlGHEftSlVLaLlqv~-------G-----~ppk~~q~vieqik~i~g~~~FETy~S-----ltC~nCPDV 134 (520)
T COG3634 72 DQGVRFAGLPLGHEFTSLVLALLQVG-------G-----HPPKEDQDVIEQIKAIDGDFHFETYFS-----LTCHNCPDV 134 (520)
T ss_pred ccceEEecCcccchHHHHHHHHHHhc-------C-----CCCchhHHHHHHHHhcCCceeEEEEEE-----eeccCChHH
Confidence 554 4555555455555555554442 1 122344667777777777665555543 379999999
Q ss_pred HHHhhc-----CCCCeEEEecCCCHHHHHHHHhhcCCCCcceeeecCccccchhhHHHHhhcchhHHHHhhh
Q 020081 158 VEILKQ-----GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKKVLAEK 224 (331)
Q Consensus 158 ~~~l~~-----~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~ifi~G~~vgg~d~~~~~~~~g~L~~~l~~~ 224 (331)
.+.|+- .+|.+..+| -.-+++..+.. ++.+||++|.||+.+|. -+=.|.++|.+.
T Consensus 135 VQALN~msvlNp~I~H~~Id---Ga~Fq~Evear-~IMaVPtvflnGe~fg~--------GRmtleeilaki 194 (520)
T COG3634 135 VQALNLMSVLNPRIKHTAID---GALFQDEVEAR-NIMAVPTVFLNGEEFGQ--------GRMTLEEILAKI 194 (520)
T ss_pred HHHHHHHHhcCCCceeEEec---chhhHhHHHhc-cceecceEEEcchhhcc--------cceeHHHHHHHh
Confidence 888875 355666665 34456666666 99999999999998864 222456666654
No 251
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.54 E-value=0.00044 Score=49.29 Aligned_cols=59 Identities=12% Similarity=0.094 Sum_probs=46.1
Q ss_pred CChhHHHHHHHHHhCCCCeEEEEecC--CHHHHHHHhhhhCCCcccEEEECCEEeechhhH
Q 020081 28 KCGFSRQVVDILKDEKVEFGSFNILS--DNEVREGLKKFSNWPTFPQLYCKGELLGGCDIV 86 (331)
Q Consensus 28 ~C~~C~~~~~~l~~~~i~~~~vdi~~--~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~ 86 (331)
.||+|.+++-+|...|++|..++++. .......+.+++...++|.+..+|..+.....+
T Consensus 8 ~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI 68 (73)
T cd03056 8 LSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAI 68 (73)
T ss_pred CCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHH
Confidence 89999999999999999999888863 223344555577888999999998877655444
No 252
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.52 E-value=0.00038 Score=57.81 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=23.2
Q ss_pred CCCCChhHHHHHHHHHh----CCCCeEEEEecC
Q 020081 25 EEPKCGFSRQVVDILKD----EKVEFGSFNILS 53 (331)
Q Consensus 25 ~~~~C~~C~~~~~~l~~----~~i~~~~vdi~~ 53 (331)
|++|||+|++..+.|.+ +++.+..++++.
T Consensus 58 WAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~ 90 (153)
T TIGR02738 58 YQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDG 90 (153)
T ss_pred ECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 56799999999888876 467777788764
No 253
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=97.50 E-value=0.00064 Score=48.58 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=50.9
Q ss_pred CCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHH
Q 020081 256 SPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELK 320 (331)
Q Consensus 256 ~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~ 320 (331)
.+.|+.|.+++-+|+..|++|+.+.++.......++.+......+|++..+|..+.....+.++.
T Consensus 6 ~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL 70 (72)
T cd03039 6 FNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYL 70 (72)
T ss_pred EcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHh
Confidence 35799999999999999999999988643222233566677889999999998888776666654
No 254
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.47 E-value=0.00027 Score=55.69 Aligned_cols=64 Identities=16% Similarity=0.221 Sum_probs=40.8
Q ss_pred HHHHHHHhcC-CCEEEEEecCCCCCCCcchHHHHHHhhcC---------CCCeEEEecCCC--HHHHHHHHhhcCCCCcc
Q 020081 126 TSRLESLINS-SPVMLFMKGKPEEPKCGFSGKVVEILKQG---------KVDFGSFDILTD--EEVRQGLKVYSNWSSYP 193 (331)
Q Consensus 126 ~~~~~~~~~~-~~vvvf~~~~~~~~~C~~C~~~~~~l~~~---------~i~~~~~di~~~--~~~~~~l~~~~~~~~vP 193 (331)
.+.+++.+++ .+.+++.+ |++||++|+.+.+.+++. .+.+..+|...+ +++. +++ ++..+|
T Consensus 8 ~~~f~~~i~~~~~~vvV~f---~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~---~~~-~i~~~P 80 (114)
T cd02992 8 AASFNSALLGSPSAWLVEF---YASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALC---RDF-GVTGYP 80 (114)
T ss_pred HHhHHHHHhcCCCeEEEEE---ECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHH---HhC-CCCCCC
Confidence 3456666544 44666666 457999999887777541 255666776433 3333 344 999999
Q ss_pred eee
Q 020081 194 QLY 196 (331)
Q Consensus 194 ~if 196 (331)
+++
T Consensus 81 t~~ 83 (114)
T cd02992 81 TLR 83 (114)
T ss_pred EEE
Confidence 993
No 255
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=97.45 E-value=0.00069 Score=48.31 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=50.0
Q ss_pred CCCCcchHHHHHHHhhcCCccEEEEecCC--HHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHH
Q 020081 256 SPRCGFSSKVVNALKEEGVNFGSFDILTD--EEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMEL 319 (331)
Q Consensus 256 ~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~--~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~ 319 (331)
.+.|++|.+++.+|+.+|++|+.+.++.. .....++.+......+|++..+|..+.....+.++
T Consensus 6 ~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y 71 (73)
T cd03042 6 YFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEY 71 (73)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 45799999999999999999999888642 22335566777888999999999888766665554
No 256
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.43 E-value=0.00029 Score=53.84 Aligned_cols=66 Identities=15% Similarity=0.369 Sum_probs=41.1
Q ss_pred HHHHHHhcC-CCEEEEEecCCCCCCCcchHHHHHHhhc--------CCCCeEEEecCCCHHHHHHHHhhcCCCCccee--
Q 020081 127 SRLESLINS-SPVMLFMKGKPEEPKCGFSGKVVEILKQ--------GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL-- 195 (331)
Q Consensus 127 ~~~~~~~~~-~~vvvf~~~~~~~~~C~~C~~~~~~l~~--------~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i-- 195 (331)
+.+++.+.+ .+.++..+ |++||++|+.+.+.+.+ ..+.+..+|.+.++ .. ..+ ++.++|++
T Consensus 8 ~~f~~~i~~~~~~~~v~f---~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~---~~~-~~~~~Pt~~~ 79 (104)
T cd02995 8 KNFDEVVLDSDKDVLVEF---YAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND-VP---SEF-VVDGFPTILF 79 (104)
T ss_pred hhhHHHHhCCCCcEEEEE---ECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh-hh---hhc-cCCCCCEEEE
Confidence 346665543 23333334 24799999988877754 13667778887652 33 333 78999999
Q ss_pred eecCc
Q 020081 196 YIKGE 200 (331)
Q Consensus 196 fi~G~ 200 (331)
|.+|+
T Consensus 80 ~~~~~ 84 (104)
T cd02995 80 FPAGD 84 (104)
T ss_pred EcCCC
Confidence 33554
No 257
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.43 E-value=0.00041 Score=69.84 Aligned_cols=75 Identities=16% Similarity=0.177 Sum_probs=48.0
Q ss_pred hhHHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHH-hh------c-CCCCeEEEecCCC-HHHHHHHHhhcCCCCcc
Q 020081 123 ATLTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEI-LK------Q-GKVDFGSFDILTD-EEVRQGLKVYSNWSSYP 193 (331)
Q Consensus 123 ~~~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~-l~------~-~~i~~~~~di~~~-~~~~~~l~~~~~~~~vP 193 (331)
++.++.+++.....+.++..+ |++||++|+.+.+. ++ + .++.+..+|++++ ++..+.++++ ++.++|
T Consensus 461 ~~l~~~l~~a~~~gK~VlVdF---~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~-~v~g~P 536 (571)
T PRK00293 461 AELDQALAEAKGKGKPVMLDL---YADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHY-NVLGLP 536 (571)
T ss_pred HHHHHHHHHHHhcCCcEEEEE---ECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHc-CCCCCC
Confidence 334455555555556666666 35899999988664 22 1 3566778898865 3444445554 999999
Q ss_pred ee-ee--cCcc
Q 020081 194 QL-YI--KGEL 201 (331)
Q Consensus 194 ~i-fi--~G~~ 201 (331)
++ |+ ||+.
T Consensus 537 t~~~~~~~G~~ 547 (571)
T PRK00293 537 TILFFDAQGQE 547 (571)
T ss_pred EEEEECCCCCC
Confidence 99 44 4554
No 258
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.41 E-value=0.00048 Score=46.38 Aligned_cols=49 Identities=22% Similarity=0.368 Sum_probs=36.0
Q ss_pred CChhHHHHHHHHH-----hCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECC
Q 020081 28 KCGFSRQVVDILK-----DEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKG 77 (331)
Q Consensus 28 ~C~~C~~~~~~l~-----~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g 77 (331)
||++|+++.+.+. ..++.+..+|++.......... ..+..++|.+++.+
T Consensus 8 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~P~~~~~~ 61 (69)
T cd01659 8 WCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELK-RYGVGGVPTLVVFG 61 (69)
T ss_pred CChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHH-hCCCccccEEEEEe
Confidence 9999999999999 5678999999988876555322 33555666666543
No 259
>PLN02309 5'-adenylylsulfate reductase
Probab=97.40 E-value=0.00046 Score=67.09 Aligned_cols=72 Identities=21% Similarity=0.306 Sum_probs=49.3
Q ss_pred hhHHHHHHHHh---cCCCEEEEEecCCCCCCCcchHHHHHHhhc-------CCCCeEEEecC-CCHHHHHHHHhhcCCCC
Q 020081 123 ATLTSRLESLI---NSSPVMLFMKGKPEEPKCGFSGKVVEILKQ-------GKVDFGSFDIL-TDEEVRQGLKVYSNWSS 191 (331)
Q Consensus 123 ~~~~~~~~~~~---~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~~i~~~~~di~-~~~~~~~~l~~~~~~~~ 191 (331)
+-..+.+++++ +..+.+|+.|+ +|||++|+.+.+.|.+ .++.|..+|++ .+.++. .+.+++.+
T Consensus 349 ~Lt~~nfe~ll~~~~~~k~vlV~Fy---ApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la---~~~~~I~~ 422 (457)
T PLN02309 349 ALSRAGIENLLKLENRKEPWLVVLY---APWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFA---KQELQLGS 422 (457)
T ss_pred ECCHHHHHHHHHhhcCCCeEEEEEE---CCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHH---HhhCCCce
Confidence 34555676665 45666776674 4789999998888764 24778888988 444443 33349999
Q ss_pred ccee--eecCc
Q 020081 192 YPQL--YIKGE 200 (331)
Q Consensus 192 vP~i--fi~G~ 200 (331)
+||+ |.+|.
T Consensus 423 ~PTil~f~~g~ 433 (457)
T PLN02309 423 FPTILLFPKNS 433 (457)
T ss_pred eeEEEEEeCCC
Confidence 9999 44553
No 260
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.40 E-value=0.00029 Score=59.75 Aligned_cols=37 Identities=11% Similarity=0.011 Sum_probs=24.9
Q ss_pred CCEEEEEecCCCCCCChhHHHHHHHHHhC---CCCeEEEEecC
Q 020081 14 HPVMLFMKGTPEEPKCGFSRQVVDILKDE---KVEFGSFNILS 53 (331)
Q Consensus 14 ~~vvvf~~~~~~~~~C~~C~~~~~~l~~~---~i~~~~vdi~~ 53 (331)
.+++++.+ |++|||+|++..+.|++. ++.+..++.++
T Consensus 63 gk~vll~F---~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~ 102 (173)
T TIGR00385 63 GKPVLLNV---WASWCPPCRAEHPYLNELAKDGLPIVGVDYKD 102 (173)
T ss_pred CCEEEEEE---ECCcCHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 44444443 456999999988877664 66777777643
No 261
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=97.39 E-value=0.00027 Score=69.66 Aligned_cols=83 Identities=10% Similarity=0.114 Sum_probs=50.5
Q ss_pred CCCEEEEEecCCCCCCChhHHHHHHHHHhC-------CCCeEEEE----------------------------ecCCHHH
Q 020081 13 SHPVMLFMKGTPEEPKCGFSRQVVDILKDE-------KVEFGSFN----------------------------ILSDNEV 57 (331)
Q Consensus 13 ~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-------~i~~~~vd----------------------------i~~~~~~ 57 (331)
+.++||+.+ |++||++|++..+.|.++ ++.+..|. ++.+..+
T Consensus 55 kGKpVvV~F---WATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~l 131 (521)
T PRK14018 55 KDKPTLIKF---WASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTL 131 (521)
T ss_pred CCCEEEEEE---EcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHH
Confidence 445444443 788999999998888763 34444332 2333455
Q ss_pred HHHHhhhhCCCcccEEE-ECCEEeechhhHHhhhcccchHHHHHhcC
Q 020081 58 REGLKKFSNWPTFPQLY-CKGELLGGCDIVIAMHKSGELKDVFRDHG 103 (331)
Q Consensus 58 ~~~~~~~~~~~t~P~if-i~g~~vgg~~~~~~~~~~~~l~~~l~~~~ 103 (331)
...++ +.++||+ .|+ .+|+.++...+.+. ..+|.++|+...
T Consensus 132 ak~fg-V~giPTt-~IIDkdGkIV~~~~G~~~---~eeL~a~Ie~~~ 173 (521)
T PRK14018 132 AQSLN-ISVYPSW-AIIGKDGDVQRIVKGSIS---EAQALALIRNPN 173 (521)
T ss_pred HHHcC-CCCcCeE-EEEcCCCeEEEEEeCCCC---HHHHHHHHHHhh
Confidence 55555 5666665 223 37988876665443 467777777553
No 262
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.39 E-value=0.00066 Score=48.60 Aligned_cols=67 Identities=21% Similarity=0.194 Sum_probs=50.1
Q ss_pred EEEecCCCCCCCCcchHHHHHHHhh--cCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEE-CCeEEeeHHHHHHH
Q 020081 247 MLFMKGNPDSPRCGFSSKVVNALKE--EGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYH-KGELIGGCDIVMEL 319 (331)
Q Consensus 247 ~vy~k~~p~~~~Cp~C~~a~~~l~~--~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi-~g~~igg~~~~~~~ 319 (331)
.+|. .+.||+|.+++-+|.. .|++|+.+.++.. ....++.+......+|++.. ||..+.....+.++
T Consensus 2 ~Ly~-----~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~y 71 (73)
T cd03049 2 KLLY-----SPTSPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLLAVNPLGKIPALVLDDGEALFDSRVICEY 71 (73)
T ss_pred EEec-----CCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhh
Confidence 4666 4689999999999999 8999999988632 12234556677889999985 67777766665554
No 263
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.39 E-value=0.00042 Score=59.48 Aligned_cols=40 Identities=15% Similarity=0.099 Sum_probs=28.4
Q ss_pred CCCEEEEEecCCCCCCChhHHHHHHHHHhC---CCCeEEEEecCCH
Q 020081 13 SHPVMLFMKGTPEEPKCGFSRQVVDILKDE---KVEFGSFNILSDN 55 (331)
Q Consensus 13 ~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~---~i~~~~vdi~~~~ 55 (331)
+.+++|..+ |++|||+|++..+.|.++ ++.+..+++++++
T Consensus 67 ~gk~vvv~F---watwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~ 109 (185)
T PRK15412 67 QGKPVLLNV---WATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDR 109 (185)
T ss_pred CCCEEEEEE---ECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCCH
Confidence 345444443 677999999988887664 6788888876553
No 264
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00019 Score=63.00 Aligned_cols=60 Identities=13% Similarity=0.191 Sum_probs=45.6
Q ss_pred CCEEEEEecCCCCCCCcchHHHHHHhhcC-----CCCeEEEecCCCHHHHHHHHhhcCCCCccee--eecCccc
Q 020081 136 SPVMLFMKGKPEEPKCGFSGKVVEILKQG-----KVDFGSFDILTDEEVRQGLKVYSNWSSYPQL--YIKGELI 202 (331)
Q Consensus 136 ~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i--fi~G~~v 202 (331)
.+.++..++ +.||++|+++.+++..+ +.-|..||+++-...+ .. +|++..||+ |.||..+
T Consensus 21 ~k~v~Vdft---a~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~ta---a~-~gV~amPTFiff~ng~ki 87 (288)
T KOG0908|consen 21 GKLVVVDFT---ASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTA---AT-NGVNAMPTFIFFRNGVKI 87 (288)
T ss_pred ceEEEEEEE---ecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchh---hh-cCcccCceEEEEecCeEe
Confidence 445566664 46899999999999874 4458899998755544 23 399999999 8899887
No 265
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.37 E-value=0.00052 Score=62.52 Aligned_cols=50 Identities=20% Similarity=0.235 Sum_probs=37.0
Q ss_pred CCCCChhHHHHHHHHHh----CCCCeEEEEecC-----------CHHHHHHHhhhhCCCcccEEEEC
Q 020081 25 EEPKCGFSRQVVDILKD----EKVEFGSFNILS-----------DNEVREGLKKFSNWPTFPQLYCK 76 (331)
Q Consensus 25 ~~~~C~~C~~~~~~l~~----~~i~~~~vdi~~-----------~~~~~~~~~~~~~~~t~P~ifi~ 76 (331)
|++||++|+.+.+.|++ +++.+..|+++. +..+.+.++ +.+.||+ .++..
T Consensus 174 ~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~g-V~~vPtl-~Lv~~ 238 (271)
T TIGR02740 174 FKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLK-IRTVPAV-FLADP 238 (271)
T ss_pred ECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcC-CCcCCeE-EEEEC
Confidence 34599999999988876 477788888865 245666676 7788887 66664
No 266
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.36 E-value=0.001 Score=54.80 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=19.8
Q ss_pred CCCEEEEEecCCCCCCCcchHHHHHHhhc
Q 020081 135 SSPVMLFMKGKPEEPKCGFSGKVVEILKQ 163 (331)
Q Consensus 135 ~~~vvvf~~~~~~~~~C~~C~~~~~~l~~ 163 (331)
..++++..| |++|||+|++..+.|++
T Consensus 24 kgk~vlL~F---wAsWCppCr~e~P~L~~ 49 (146)
T cd03008 24 ENRVLLLFF---GAVVSPQCQLFAPKLKD 49 (146)
T ss_pred CCCEEEEEE---ECCCChhHHHHHHHHHH
Confidence 346666666 67899999988888854
No 267
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=97.35 E-value=0.0013 Score=47.50 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=47.3
Q ss_pred CCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHHH
Q 020081 258 RCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKD 321 (331)
Q Consensus 258 ~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~~ 321 (331)
.||+|.+++.+|+..|++|+.+++.. .+.+....+|++..||+.+.....+.++.+
T Consensus 16 ~sp~~~~v~~~L~~~gi~~~~~~~~~--------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL~ 71 (75)
T cd03080 16 LSPFCLKVETFLRMAGIPYENKFGGL--------AKRSPKGKLPFIELNGEKIADSELIIDHLE 71 (75)
T ss_pred CCHHHHHHHHHHHHCCCCcEEeecCc--------ccCCCCCCCCEEEECCEEEcCHHHHHHHHH
Confidence 58999999999999999999988753 245677899999999999988887777654
No 268
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00085 Score=47.60 Aligned_cols=61 Identities=18% Similarity=0.300 Sum_probs=43.0
Q ss_pred CCCcchHHHHHHHhhcCCccEEEEecCCH-HHHHHHH-----------hhcCCCCcCEEEEC-CeEEeeHHHHHH
Q 020081 257 PRCGFSSKVVNALKEEGVNFGSFDILTDE-EVRQGLK-----------VYSNWPTFPQLYHK-GELIGGCDIVME 318 (331)
Q Consensus 257 ~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~-~~~~~l~-----------~~~g~~~vP~ifi~-g~~igg~~~~~~ 318 (331)
..||.|..++..|++.+++|++++|.+.. ...+.|. +..|.-.+|.+..+ |+.|-| +|+.+
T Consensus 10 n~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~-~Dl~k 83 (85)
T COG4545 10 NLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG-DDLSK 83 (85)
T ss_pred ccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe-chhhh
Confidence 48999999999999999999999997542 2222221 11367789999875 565555 55443
No 269
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=97.32 E-value=0.00086 Score=59.77 Aligned_cols=58 Identities=21% Similarity=0.491 Sum_probs=51.9
Q ss_pred CEEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEe
Q 020081 15 PVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELL 80 (331)
Q Consensus 15 ~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~v 80 (331)
++++|.+. .||+|-+++.+|+-++++|..|.+ +|-.+++.+ .+....+|++.+.|+..
T Consensus 90 ~l~LyQye-----tCPFCcKVrAFLDyhgisY~VVEV--npV~r~eIk-~SsykKVPil~~~Geqm 147 (370)
T KOG3029|consen 90 DLVLYQYE-----TCPFCCKVRAFLDYHGISYAVVEV--NPVLRQEIK-WSSYKKVPILLIRGEQM 147 (370)
T ss_pred eEEEEeec-----cCchHHHHHHHHhhcCCceEEEEe--cchhhhhcc-ccccccccEEEecccee
Confidence 69999887 699999999999999999999988 477788887 88999999999988854
No 270
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=97.32 E-value=0.00047 Score=54.59 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=40.6
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhh---hCCCcccEEEECCEEe
Q 020081 17 MLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKF---SNWPTFPQLYCKGELL 80 (331)
Q Consensus 17 vvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~---~~~~t~P~ifi~g~~v 80 (331)
.||... +|++|++++.+|++.|++|..+|+.+++.-+.++.++ +|...-..+-..|...
T Consensus 2 ~iY~~~-----~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~~~ 63 (117)
T TIGR01617 2 KVYGSP-----NCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQSY 63 (117)
T ss_pred EEEeCC-----CCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCcch
Confidence 567654 8999999999999999999999998775544444433 3322222344455544
No 271
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.31 E-value=0.00057 Score=54.91 Aligned_cols=30 Identities=17% Similarity=0.071 Sum_probs=20.9
Q ss_pred CCCCChhHHHHHHHHHhC---------CCCeEEEEecCC
Q 020081 25 EEPKCGFSRQVVDILKDE---------KVEFGSFNILSD 54 (331)
Q Consensus 25 ~~~~C~~C~~~~~~l~~~---------~i~~~~vdi~~~ 54 (331)
|++||++|++..+.|.+. ++.+..++++.+
T Consensus 26 wa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~ 64 (131)
T cd03009 26 SASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRD 64 (131)
T ss_pred ECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCC
Confidence 566999999888877642 455666666544
No 272
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=97.30 E-value=0.00096 Score=47.68 Aligned_cols=54 Identities=15% Similarity=0.072 Sum_probs=44.6
Q ss_pred CCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechhhHHh
Q 020081 27 PKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIA 88 (331)
Q Consensus 27 ~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~~ 88 (331)
.+||+|.+++.+|+.+|++|..++++... ++...++|++..+|+.+.+...+..
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~~p~g~vP~l~~~g~~l~es~~I~~ 67 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNPW--------RSPTGKLPFLELNGEKIADSEKIIE 67 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCcc--------cCCCcccCEEEECCEEEcCHHHHHH
Confidence 48999999999999999999999886422 4566789999999998887765544
No 273
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.29 E-value=0.00016 Score=58.27 Aligned_cols=74 Identities=15% Similarity=0.254 Sum_probs=42.5
Q ss_pred HHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC-----CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEE---C
Q 020081 5 SRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE-----KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYC---K 76 (331)
Q Consensus 5 ~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi---~ 76 (331)
+.+..+-++..++||+.+ |||.|.+..++|... ++++..+-.++++++.+.+.. .|.+++|.+++ +
T Consensus 34 ~~l~~~~~~~~ilvi~e~-----WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 34 EKLKSIQKPYNILVITET-----WCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGGRSIPTFIFLDKD 107 (129)
T ss_dssp HHHHT--S-EEEEEE--T-----T-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS--SSEEEEE-TT
T ss_pred HHHHhcCCCcEEEEEECC-----CchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCCeecCEEEEEcCC
Confidence 344555555568888865 999999988888774 567777767777776665543 56666666555 4
Q ss_pred CEEeechh
Q 020081 77 GELLGGCD 84 (331)
Q Consensus 77 g~~vgg~~ 84 (331)
|+.+|.+.
T Consensus 108 ~~~lg~wg 115 (129)
T PF14595_consen 108 GKELGRWG 115 (129)
T ss_dssp --EEEEEE
T ss_pred CCEeEEEc
Confidence 67777664
No 274
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.27 E-value=0.00034 Score=55.30 Aligned_cols=44 Identities=25% Similarity=0.480 Sum_probs=35.5
Q ss_pred CEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHh
Q 020081 245 PVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKV 293 (331)
Q Consensus 245 ~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~ 293 (331)
.|++|. .|.|.-|++|+++|+++||+|+++|+..++--+++|.+
T Consensus 2 ~itiy~-----~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~ 45 (117)
T COG1393 2 MITIYG-----NPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKK 45 (117)
T ss_pred eEEEEe-----CCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHH
Confidence 378999 57999999999999999999999999865433344433
No 275
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.27 E-value=0.00074 Score=45.42 Aligned_cols=50 Identities=26% Similarity=0.428 Sum_probs=39.8
Q ss_pred CCCcchHHHHHHhh-----cCCCCeEEEecCCCHHHHHHHHhhcCCCCcceeeecC
Q 020081 149 PKCGFSGKVVEILK-----QGKVDFGSFDILTDEEVRQGLKVYSNWSSYPQLYIKG 199 (331)
Q Consensus 149 ~~C~~C~~~~~~l~-----~~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~ifi~G 199 (331)
.||++|.++.+.++ ..++.+..+|++......+.+.. .+..++|++++.+
T Consensus 7 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~P~~~~~~ 61 (69)
T cd01659 7 PWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKR-YGVGGVPTLVVFG 61 (69)
T ss_pred CCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHh-CCCccccEEEEEe
Confidence 58999999999998 57888999999887766544333 4899999996654
No 276
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.26 E-value=0.00073 Score=54.48 Aligned_cols=38 Identities=11% Similarity=-0.048 Sum_probs=24.6
Q ss_pred CCEEEEEecCCCCCCChhHHHHHHHHHhC---------CCCeEEEEecCC
Q 020081 14 HPVMLFMKGTPEEPKCGFSRQVVDILKDE---------KVEFGSFNILSD 54 (331)
Q Consensus 14 ~~vvvf~~~~~~~~~C~~C~~~~~~l~~~---------~i~~~~vdi~~~ 54 (331)
.++++..+ |++||++|+...+.|+++ ++.+..++++.+
T Consensus 17 Gk~vll~F---~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~ 63 (132)
T cd02964 17 GKTVGLYF---SASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRS 63 (132)
T ss_pred CCEEEEEE---ECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCC
Confidence 34444443 567999999987776542 355666666654
No 277
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.25 E-value=9.9e-05 Score=59.52 Aligned_cols=70 Identities=14% Similarity=0.237 Sum_probs=43.1
Q ss_pred chhHHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc----C-CCCeEEEecCCCHHHHHHHHhhcCCCCcceee
Q 020081 122 SATLTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ----G-KVDFGSFDILTDEEVRQGLKVYSNWSSYPQLY 196 (331)
Q Consensus 122 ~~~~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~----~-~i~~~~~di~~~~~~~~~l~~~~~~~~vP~if 196 (331)
+++..+.++.+.++..+++|+- +|||+|....+.|.+ . +|++..+-.+.++++.+.... .|..++|+++
T Consensus 29 ~~~~~~~l~~~~~~~~ilvi~e-----~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~~~IP~~I 102 (129)
T PF14595_consen 29 SEEQIEKLKSIQKPYNILVITE-----TWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGGRSIPTFI 102 (129)
T ss_dssp -HHHHHHHHT--S-EEEEEE-------TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS--SSEEE
T ss_pred CHHHHHHHHhcCCCcEEEEEEC-----CCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCCeecCEEE
Confidence 3566677788888888888887 699999988877764 3 677777766666666544434 4899999994
Q ss_pred e
Q 020081 197 I 197 (331)
Q Consensus 197 i 197 (331)
+
T Consensus 103 ~ 103 (129)
T PF14595_consen 103 F 103 (129)
T ss_dssp E
T ss_pred E
Confidence 4
No 278
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=97.24 E-value=0.0013 Score=58.61 Aligned_cols=59 Identities=24% Similarity=0.500 Sum_probs=49.2
Q ss_pred CCEEEEEecCCCCCCCcchHHHHHHhhcCCCCeEEEecCCCHHHHHHHHhhcCCCCcceeeecCccc
Q 020081 136 SPVMLFMKGKPEEPKCGFSGKVVEILKQGKVDFGSFDILTDEEVRQGLKVYSNWSSYPQLYIKGELI 202 (331)
Q Consensus 136 ~~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~ifi~G~~v 202 (331)
-+++||-+ .+||+|-+++.+|.-++|.|..+++ ||-.++.+ +.|.++.||.+.+.|+..
T Consensus 89 L~l~LyQy-----etCPFCcKVrAFLDyhgisY~VVEV--npV~r~eI-k~SsykKVPil~~~Geqm 147 (370)
T KOG3029|consen 89 LDLVLYQY-----ETCPFCCKVRAFLDYHGISYAVVEV--NPVLRQEI-KWSSYKKVPILLIRGEQM 147 (370)
T ss_pred ceEEEEee-----ccCchHHHHHHHHhhcCCceEEEEe--cchhhhhc-cccccccccEEEecccee
Confidence 47888987 5899999999999999999999887 45556666 566889999999988753
No 279
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.22 E-value=0.00073 Score=53.33 Aligned_cols=42 Identities=21% Similarity=0.445 Sum_probs=33.7
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHh
Q 020081 16 VMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLK 62 (331)
Q Consensus 16 vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~ 62 (331)
+.||... +|+.|++++.+|+++|++|..+|+.+++.-+.++.
T Consensus 2 i~iY~~~-----~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~ 43 (115)
T cd03032 2 IKLYTSP-----SCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELK 43 (115)
T ss_pred EEEEeCC-----CCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHH
Confidence 5677754 89999999999999999999999987743333333
No 280
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=97.21 E-value=0.0027 Score=46.41 Aligned_cols=70 Identities=11% Similarity=0.087 Sum_probs=53.5
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecC--CHHHHHHHHhhcCCCCcCEEEEC---CeEEeeHHHHHHHH
Q 020081 246 VMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILT--DEEVRQGLKVYSNWPTFPQLYHK---GELIGGCDIVMELK 320 (331)
Q Consensus 246 v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~--~~~~~~~l~~~~g~~~vP~ifi~---g~~igg~~~~~~~~ 320 (331)
+.+|. .+. |+|.+++-+|+..|++|+.+.+.. .....+++.+......+|.+..+ |..+.....+.++.
T Consensus 2 ~~Ly~-----~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL 75 (81)
T cd03048 2 ITLYT-----HGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYL 75 (81)
T ss_pred eEEEe-----CCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHH
Confidence 56787 344 999999999999999999888763 23444667777888899999887 77777766666654
Q ss_pred H
Q 020081 321 D 321 (331)
Q Consensus 321 ~ 321 (331)
.
T Consensus 76 ~ 76 (81)
T cd03048 76 A 76 (81)
T ss_pred H
Confidence 3
No 281
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=97.20 E-value=0.00035 Score=54.20 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=31.1
Q ss_pred EEEEEecCCCCCCCcchHHHHHHhhcCCCCeEEEecCCCH
Q 020081 138 VMLFMKGKPEEPKCGFSGKVVEILKQGKVDFGSFDILTDE 177 (331)
Q Consensus 138 vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~~di~~~~ 177 (331)
|.+|.. |+|+.|++++++|+++++.|..+|+.+++
T Consensus 1 i~iy~~-----~~C~~crka~~~L~~~~i~~~~~di~~~p 35 (105)
T cd03035 1 ITLYGI-----KNCDTVKKARKWLEARGVAYTFHDYRKDG 35 (105)
T ss_pred CEEEeC-----CCCHHHHHHHHHHHHcCCCeEEEecccCC
Confidence 457766 69999999999999999999999998774
No 282
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.17 E-value=0.0015 Score=48.05 Aligned_cols=64 Identities=11% Similarity=0.148 Sum_probs=38.2
Q ss_pred hHHHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC---------CCCeEEEEecCCHHHHHHHhhhhCCCcc
Q 020081 2 LLKSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE---------KVEFGSFNILSDNEVREGLKKFSNWPTF 70 (331)
Q Consensus 2 ~~~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~---------~i~~~~vdi~~~~~~~~~~~~~~~~~t~ 70 (331)
+..+.+++..++++-++..++ ++||++|+.+.+.+-+. +.-+..+|++...... .+. ..|.|++
T Consensus 5 d~~~al~~A~~~~kpvlv~f~---a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~-~~~-~~~~P~~ 77 (82)
T PF13899_consen 5 DYEEALAEAKKEGKPVLVDFG---ADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA-QFD-RQGYPTF 77 (82)
T ss_dssp SHHHHHHHHHHHTSEEEEEEE---TTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH-HHH-HCSSSEE
T ss_pred hHHHHHHHHHHcCCCEEEEEE---CCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH-HhC-CccCCEE
Confidence 456777888877775555443 45999999998765331 3445555654333222 333 2566665
No 283
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.16 E-value=0.0012 Score=53.25 Aligned_cols=64 Identities=16% Similarity=0.158 Sum_probs=39.7
Q ss_pred CCEEEEEecCCCCCCCcchHHHHHHhhc-------C--CCCeEEEecCCCH---------------------HHHHHHHh
Q 020081 136 SPVMLFMKGKPEEPKCGFSGKVVEILKQ-------G--KVDFGSFDILTDE---------------------EVRQGLKV 185 (331)
Q Consensus 136 ~~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~--~i~~~~~di~~~~---------------------~~~~~l~~ 185 (331)
.+++|..+ |++||+.|+...+.|++ . ++.+..++++.++ .....+.+
T Consensus 17 Gk~vll~F---~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 93 (132)
T cd02964 17 GKTVGLYF---SASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEK 93 (132)
T ss_pred CCEEEEEE---ECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHH
Confidence 35666666 56899999987776653 1 3455555655442 12334555
Q ss_pred hcCCCCcceee-ec--Cccc
Q 020081 186 YSNWSSYPQLY-IK--GELI 202 (331)
Q Consensus 186 ~~~~~~vP~if-i~--G~~v 202 (331)
.+++.++|+++ ++ |+.+
T Consensus 94 ~~~v~~iPt~~lid~~G~iv 113 (132)
T cd02964 94 QFKVEGIPTLVVLKPDGDVV 113 (132)
T ss_pred HcCCCCCCEEEEECCCCCEE
Confidence 56899999995 44 5444
No 284
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.16 E-value=0.00079 Score=54.42 Aligned_cols=36 Identities=22% Similarity=0.518 Sum_probs=31.7
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHH
Q 020081 16 VMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNE 56 (331)
Q Consensus 16 vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~ 56 (331)
++||+.. +|+.|++++.+|++.|++|..+|+.+++-
T Consensus 2 i~iY~~~-----~C~~crkA~~~L~~~gi~~~~~di~~~~~ 37 (131)
T PRK12559 2 VVLYTTA-----SCASCRKAKAWLEENQIDYTEKNIVSNSM 37 (131)
T ss_pred EEEEeCC-----CChHHHHHHHHHHHcCCCeEEEEeeCCcC
Confidence 5688764 99999999999999999999999987743
No 285
>PRK10026 arsenate reductase; Provisional
Probab=97.16 E-value=0.0005 Score=56.08 Aligned_cols=44 Identities=20% Similarity=0.434 Sum_probs=35.8
Q ss_pred CCEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHH
Q 020081 244 SPVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLK 292 (331)
Q Consensus 244 ~~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~ 292 (331)
..|++|. .|.|.-|++|+++|+++|++|+++|+..++--.++|.
T Consensus 2 ~~i~iY~-----~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~ 45 (141)
T PRK10026 2 SNITIYH-----NPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELV 45 (141)
T ss_pred CEEEEEe-----CCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHH
Confidence 4588999 5799999999999999999999999977543333333
No 286
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=97.14 E-value=0.0016 Score=56.97 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=50.8
Q ss_pred CCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEE-ECCeEEeeHHHHHHHHHc
Q 020081 256 SPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLY-HKGELIGGCDIVMELKDN 322 (331)
Q Consensus 256 ~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~if-i~g~~igg~~~~~~~~~~ 322 (331)
.+.||+|.+++-+|+.+|++|+.+++...... . ..+.....++|++. .||..+.+...+.++.+.
T Consensus 5 ~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~-~-~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~ 70 (209)
T TIGR02182 5 YDHCPFCVRARMIFGLKNIPVEKHVLLNDDEE-T-PIRMIGAKQVPILQKDDGRAMPESLDIVAYFDK 70 (209)
T ss_pred CCCCChHHHHHHHHHHcCCCeEEEECCCCcch-h-HHHhcCCCCcceEEeeCCeEeccHHHHHHHHHH
Confidence 35899999999999999999999988544321 1 24556678999997 788899988888776553
No 287
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.12 E-value=0.00062 Score=54.59 Aligned_cols=35 Identities=26% Similarity=0.528 Sum_probs=31.2
Q ss_pred CEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCC
Q 020081 245 PVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTD 284 (331)
Q Consensus 245 ~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~ 284 (331)
.+++|. .|.|.-|++|+++|+++|++|+++|+..+
T Consensus 2 ~i~iY~-----~p~Cst~RKA~~~L~~~gi~~~~~d~~~~ 36 (126)
T TIGR01616 2 TIIFYE-----KPGCANNARQKAALKASGHDVEVQDILKE 36 (126)
T ss_pred eEEEEe-----CCCCHHHHHHHHHHHHCCCCcEEEeccCC
Confidence 477899 57999999999999999999999998653
No 288
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=97.10 E-value=0.0016 Score=48.11 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=50.4
Q ss_pred CCCCcchHHHHHHHhhcCCccEEEEecCC--HHHHHHHHhhcCCCCcCEEEEC-CeEEeeHHHHHHHHH
Q 020081 256 SPRCGFSSKVVNALKEEGVNFGSFDILTD--EEVRQGLKVYSNWPTFPQLYHK-GELIGGCDIVMELKD 321 (331)
Q Consensus 256 ~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~--~~~~~~l~~~~g~~~vP~ifi~-g~~igg~~~~~~~~~ 321 (331)
.++||+|.+++-+|...|++|+.+.++.. .....++ +......+|++..| |..+.....+.++.+
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~ 80 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLE 80 (84)
T ss_pred CCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHH
Confidence 36799999999999999999999887532 2223334 45678899999888 888888877777654
No 289
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=97.09 E-value=0.0014 Score=59.09 Aligned_cols=70 Identities=16% Similarity=0.317 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhcCC---------CCeEEEecCCCHHHHHHHHhhcCCCCccee
Q 020081 125 LTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQGK---------VDFGSFDILTDEEVRQGLKVYSNWSSYPQL 195 (331)
Q Consensus 125 ~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~~---------i~~~~~di~~~~~~~~~l~~~~~~~~vP~i 195 (331)
..+.+++.. +..+-+..++ +|||++|+++.++.++-+ |+....|...-+.++..+ |+.+.|||
T Consensus 33 LddkFkdnk-dddiW~VdFY---APWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnef----giqGYPTI 104 (468)
T KOG4277|consen 33 LDDKFKDNK-DDDIWFVDFY---APWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEF----GIQGYPTI 104 (468)
T ss_pred hhHHhhhcc-cCCeEEEEee---chhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhh----ccCCCceE
Confidence 444444433 4455566665 478999999999998733 334556776667777444 99999999
Q ss_pred -eecCccc
Q 020081 196 -YIKGELI 202 (331)
Q Consensus 196 -fi~G~~v 202 (331)
|..|.++
T Consensus 105 k~~kgd~a 112 (468)
T KOG4277|consen 105 KFFKGDHA 112 (468)
T ss_pred EEecCCee
Confidence 5555444
No 290
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.09 E-value=0.0013 Score=52.44 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=20.1
Q ss_pred CCCCChhHHHHHHHHHhC----CCCeEEEEec
Q 020081 25 EEPKCGFSRQVVDILKDE----KVEFGSFNIL 52 (331)
Q Consensus 25 ~~~~C~~C~~~~~~l~~~----~i~~~~vdi~ 52 (331)
|++|||+|+...+.|.++ ++.+..++++
T Consensus 33 ~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~ 64 (127)
T cd03010 33 WASWCAPCREEHPVLMALARQGRVPIYGINYK 64 (127)
T ss_pred EcCcCHHHHHHHHHHHHHHHhcCcEEEEEECC
Confidence 456999999988887764 4666666643
No 291
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=97.08 E-value=0.0008 Score=48.00 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=49.3
Q ss_pred CCcchHHHHHHHhhcCCccEEEEecC---CHHHHHHHHhhcCCCCcCEEEE-CCeEEeeHHHHHHHHH
Q 020081 258 RCGFSSKVVNALKEEGVNFGSFDILT---DEEVRQGLKVYSNWPTFPQLYH-KGELIGGCDIVMELKD 321 (331)
Q Consensus 258 ~Cp~C~~a~~~l~~~~v~~~~~dv~~---~~~~~~~l~~~~g~~~vP~ifi-~g~~igg~~~~~~~~~ 321 (331)
.||||.++.-+|+.+|++|+..-+.. ......++.+.++..+||++.. +|+.+.....+.++.+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHh
Confidence 49999999999999999999877732 1222255788889999999998 7899988877777654
No 292
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.08 E-value=0.0016 Score=52.32 Aligned_cols=63 Identities=19% Similarity=0.183 Sum_probs=37.9
Q ss_pred CEEEEEecCCCCCCCcchHHHHHHhhc-------C--CCCeEEEecCCCHH--------------------HHHHHHhhc
Q 020081 137 PVMLFMKGKPEEPKCGFSGKVVEILKQ-------G--KVDFGSFDILTDEE--------------------VRQGLKVYS 187 (331)
Q Consensus 137 ~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~--~i~~~~~di~~~~~--------------------~~~~l~~~~ 187 (331)
+++|..+ |++||++|+...+.|++ . ++.+..++++.+.+ ....+.+.+
T Consensus 19 k~vll~F---wa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (131)
T cd03009 19 KTVGLYF---SASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTF 95 (131)
T ss_pred cEEEEEE---ECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHc
Confidence 4455555 45799999987777653 1 44555556654421 112344456
Q ss_pred CCCCcceeee---cCccc
Q 020081 188 NWSSYPQLYI---KGELI 202 (331)
Q Consensus 188 ~~~~vP~ifi---~G~~v 202 (331)
|+..+|++++ +|+.+
T Consensus 96 ~v~~~P~~~lid~~G~i~ 113 (131)
T cd03009 96 KIEGIPTLIILDADGEVV 113 (131)
T ss_pred CCCCCCEEEEECCCCCEE
Confidence 9999999944 45544
No 293
>PRK10853 putative reductase; Provisional
Probab=97.08 E-value=0.00064 Score=53.91 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=30.9
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCC
Q 020081 246 VMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTD 284 (331)
Q Consensus 246 v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~ 284 (331)
+++|. .|.|.-|++|+++|+++|++|+++|+..+
T Consensus 2 i~iy~-----~~~C~t~rkA~~~L~~~~i~~~~~d~~k~ 35 (118)
T PRK10853 2 VTLYG-----IKNCDTIKKARRWLEAQGIDYRFHDYRVD 35 (118)
T ss_pred EEEEc-----CCCCHHHHHHHHHHHHcCCCcEEeehccC
Confidence 67898 57999999999999999999999998754
No 294
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.08 E-value=0.00098 Score=55.39 Aligned_cols=51 Identities=10% Similarity=0.212 Sum_probs=32.9
Q ss_pred CCCCCcchHHHHHHhhc----CCCCeEEEecCCCH--H-------HHHHHHhhc---CCCCcceeee
Q 020081 147 EEPKCGFSGKVVEILKQ----GKVDFGSFDILTDE--E-------VRQGLKVYS---NWSSYPQLYI 197 (331)
Q Consensus 147 ~~~~C~~C~~~~~~l~~----~~i~~~~~di~~~~--~-------~~~~l~~~~---~~~~vP~ifi 197 (331)
|++||++|++..+.|++ .++.+..++++.+. . ..+.+...+ ++.++|+.|+
T Consensus 58 WAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L 124 (153)
T TIGR02738 58 YQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL 124 (153)
T ss_pred ECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence 56899999988888764 56777666665421 0 012223444 6789999944
No 295
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=97.07 E-value=0.0024 Score=48.10 Aligned_cols=61 Identities=20% Similarity=0.236 Sum_probs=46.1
Q ss_pred CCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechhhHH
Q 020081 26 EPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIVI 87 (331)
Q Consensus 26 ~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~ 87 (331)
...||+|++++-.|.++|++|..++++.... -+.+.+++-..++|.+..+|..+.....+.
T Consensus 19 ~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~-p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~ 79 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKGVVFNVTTVDMKRK-PEDLKDLAPGTQPPFLLYNGEVKTDNNKIE 79 (91)
T ss_pred CCCChhHHHHHHHHHHCCCceEEEEeCCCCC-CHHHHHhCCCCCCCEEEECCEEecCHHHHH
Confidence 4689999999999999999998888864321 123445777889999988888776555443
No 296
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.05 E-value=0.001 Score=53.80 Aligned_cols=35 Identities=9% Similarity=0.287 Sum_probs=31.0
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCH
Q 020081 16 VMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDN 55 (331)
Q Consensus 16 vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~ 55 (331)
+.||+.. +|+.|++++.+|+++|++|..+|+..++
T Consensus 2 i~iY~~~-----~C~~crkA~~~L~~~~i~~~~~d~~~~~ 36 (132)
T PRK13344 2 IKIYTIS-----SCTSCKKAKTWLNAHQLSYKEQNLGKEP 36 (132)
T ss_pred EEEEeCC-----CCHHHHHHHHHHHHcCCCeEEEECCCCC
Confidence 5678754 9999999999999999999999998764
No 297
>PRK10387 glutaredoxin 2; Provisional
Probab=97.01 E-value=0.0027 Score=55.14 Aligned_cols=69 Identities=14% Similarity=0.188 Sum_probs=52.3
Q ss_pred EEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEE-EECCeEEeeHHHHHHHHHc
Q 020081 247 MLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQL-YHKGELIGGCDIVMELKDN 322 (331)
Q Consensus 247 ~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~i-fi~g~~igg~~~~~~~~~~ 322 (331)
.+|+ .+.||+|.+++-+|+..|++|+.+++....... . .+..+..+||++ ..||..+.....+..+.+.
T Consensus 2 ~Ly~-----~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~-~-~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~ 71 (210)
T PRK10387 2 KLYI-----YDHCPFCVKARMIFGLKNIPVELIVLANDDEAT-P-IRMIGQKQVPILQKDDGSYMPESLDIVHYIDE 71 (210)
T ss_pred EEEe-----CCCCchHHHHHHHHHHcCCCeEEEEcCCCchhh-H-HHhcCCcccceEEecCCeEecCHHHHHHHHHH
Confidence 5677 458999999999999999999999986443221 2 345567899999 4678888887777766543
No 298
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=97.00 E-value=0.0048 Score=44.48 Aligned_cols=70 Identities=14% Similarity=0.120 Sum_probs=53.3
Q ss_pred EEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCC--HHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHHH
Q 020081 247 MLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTD--EEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKD 321 (331)
Q Consensus 247 ~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~--~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~~ 321 (331)
.+|. .+.++.|.++.-+|+..|++|+.+.++.. .....++.+......+|++..+|..+.....+..+.+
T Consensus 2 ~ly~-----~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~ 73 (76)
T cd03050 2 KLYY-----DLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLA 73 (76)
T ss_pred EEee-----CCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 4677 56899999999999999999999887632 2223456677788899999988887776666655543
No 299
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.00 E-value=0.00086 Score=52.76 Aligned_cols=42 Identities=19% Similarity=0.385 Sum_probs=34.3
Q ss_pred CEEEEEecCCCCCCCcchHHHHHHhhcCCCCeEEEecCCCHHHHHHH
Q 020081 137 PVMLFMKGKPEEPKCGFSGKVVEILKQGKVDFGSFDILTDEEVRQGL 183 (331)
Q Consensus 137 ~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~~di~~~~~~~~~l 183 (331)
.|++|.. |.|+.|++++++|+++++.|+.+|+.+++--.+.|
T Consensus 1 ~i~iy~~-----p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL 42 (113)
T cd03033 1 DIIFYEK-----PGCANNARQKALLEAAGHEVEVRDLLTEPWTAETL 42 (113)
T ss_pred CEEEEEC-----CCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHH
Confidence 3678877 68999999999999999999999998764333333
No 300
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=96.98 E-value=0.0011 Score=65.35 Aligned_cols=26 Identities=8% Similarity=-0.048 Sum_probs=20.8
Q ss_pred CCCEEEEEecCCCCCCCcchHHHHHHhhc
Q 020081 135 SSPVMLFMKGKPEEPKCGFSGKVVEILKQ 163 (331)
Q Consensus 135 ~~~vvvf~~~~~~~~~C~~C~~~~~~l~~ 163 (331)
..+++|+.+ |++||++|+...+.|++
T Consensus 55 kGKpVvV~F---WATWCppCk~emP~L~e 80 (521)
T PRK14018 55 KDKPTLIKF---WASWCPLCLSELGETEK 80 (521)
T ss_pred CCCEEEEEE---EcCCCHHHHHHHHHHHH
Confidence 567777777 78999999998877764
No 301
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=96.96 E-value=0.003 Score=54.16 Aligned_cols=47 Identities=15% Similarity=0.084 Sum_probs=31.1
Q ss_pred CCCEEEEEecCCCCCCCcchHHHHHHhhc---CCCCeEEEecCCCH-HHHHHHH
Q 020081 135 SSPVMLFMKGKPEEPKCGFSGKVVEILKQ---GKVDFGSFDILTDE-EVRQGLK 184 (331)
Q Consensus 135 ~~~vvvf~~~~~~~~~C~~C~~~~~~l~~---~~i~~~~~di~~~~-~~~~~l~ 184 (331)
..+++|+.| |++||++|++..+.|++ .++.+..++.++++ +++++++
T Consensus 67 ~gk~vvv~F---watwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~ 117 (185)
T PRK15412 67 QGKPVLLNV---WATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLK 117 (185)
T ss_pred CCCEEEEEE---ECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHH
Confidence 455666666 67899999988777654 46777777765553 3444443
No 302
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.95 E-value=0.0015 Score=58.16 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=17.7
Q ss_pred CEEEEEecCCCCCCChhHHHHHHHHHhC
Q 020081 15 PVMLFMKGTPEEPKCGFSRQVVDILKDE 42 (331)
Q Consensus 15 ~vvvf~~~~~~~~~C~~C~~~~~~l~~~ 42 (331)
+.+|+.+++ |.||||+++.+.+.++
T Consensus 108 k~~I~vFtD---p~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 108 KHVITVFTD---ITCGYCHKLHEQMKDY 132 (232)
T ss_pred CEEEEEEEC---CCChHHHHHHHHHHHH
Confidence 344444444 4999999998888875
No 303
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=96.93 E-value=0.00079 Score=53.08 Aligned_cols=43 Identities=21% Similarity=0.474 Sum_probs=34.3
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHh
Q 020081 246 VMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKV 293 (331)
Q Consensus 246 v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~ 293 (331)
|++|. .|.|.-|++|+++|+++|++|+++|+..++--.+++.+
T Consensus 1 i~iy~-----~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~ 43 (114)
T TIGR00014 1 VTIYH-----NPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEA 43 (114)
T ss_pred CEEEE-----CCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHH
Confidence 46888 47999999999999999999999999875433333433
No 304
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=96.93 E-value=0.00099 Score=52.33 Aligned_cols=34 Identities=24% Similarity=0.523 Sum_probs=30.3
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCC
Q 020081 246 VMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTD 284 (331)
Q Consensus 246 v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~ 284 (331)
|++|. .|.|.-|++|+++|++++++|+++|+.++
T Consensus 1 i~iy~-----~~~C~t~rkA~~~L~~~~i~~~~~di~~~ 34 (112)
T cd03034 1 ITIYH-----NPRCSKSRNALALLEEAGIEPEIVEYLKT 34 (112)
T ss_pred CEEEE-----CCCCHHHHHHHHHHHHCCCCeEEEecccC
Confidence 46888 56999999999999999999999998654
No 305
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=96.90 E-value=0.0062 Score=55.17 Aligned_cols=69 Identities=23% Similarity=0.480 Sum_probs=54.5
Q ss_pred HHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc-----------CCCCeEEEecCCCHHHHHHHHhhcCCCCccee
Q 020081 127 SRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ-----------GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL 195 (331)
Q Consensus 127 ~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-----------~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i 195 (331)
+.++.++....+++..++ ++||++++.+++++.+ .++-+..||.+.++.++ ..|.+..+||+
T Consensus 4 ~N~~~il~s~elvfv~Fy---AdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia----~ky~I~KyPTl 76 (375)
T KOG0912|consen 4 ENIDSILDSNELVFVNFY---ADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIA----DKYHINKYPTL 76 (375)
T ss_pred ccHHHhhccceEEeeeee---hhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHh----hhhccccCcee
Confidence 357788888999998885 5899999999999976 24447788888877777 33489999999
Q ss_pred --eecCccc
Q 020081 196 --YIKGELI 202 (331)
Q Consensus 196 --fi~G~~v 202 (331)
|.||...
T Consensus 77 KvfrnG~~~ 85 (375)
T KOG0912|consen 77 KVFRNGEMM 85 (375)
T ss_pred eeeeccchh
Confidence 8899654
No 306
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=96.90 E-value=0.0049 Score=44.38 Aligned_cols=65 Identities=14% Similarity=0.069 Sum_probs=50.5
Q ss_pred CCCCcchHHHHHHHhhcCCccEEEEecCCH-HHHHHHHhhcCCCCcCEEEEC-CeEEeeHHHHHHHH
Q 020081 256 SPRCGFSSKVVNALKEEGVNFGSFDILTDE-EVRQGLKVYSNWPTFPQLYHK-GELIGGCDIVMELK 320 (331)
Q Consensus 256 ~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~-~~~~~l~~~~g~~~vP~ifi~-g~~igg~~~~~~~~ 320 (331)
.+.||+|.+++-+|+..|++|+.++++... ....++.+..-...+|++..+ |..+.....+.++.
T Consensus 6 ~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL 72 (75)
T cd03044 6 YPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYV 72 (75)
T ss_pred CCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHH
Confidence 468999999999999999999999886532 233557777788899999984 77777666665554
No 307
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=96.90 E-value=0.0023 Score=52.63 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=30.0
Q ss_pred CCEEEEEecCCCCCCChhHHHHHHHHHhC--------------CCCeEEEEecCCHH-HHHHHh
Q 020081 14 HPVMLFMKGTPEEPKCGFSRQVVDILKDE--------------KVEFGSFNILSDNE-VREGLK 62 (331)
Q Consensus 14 ~~vvvf~~~~~~~~~C~~C~~~~~~l~~~--------------~i~~~~vdi~~~~~-~~~~~~ 62 (331)
.++|+..+ ||+|||+|++..+.|.++ ++.+..|+.+.+.+ +.+.+.
T Consensus 25 gk~vlL~F---wAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~ 85 (146)
T cd03008 25 NRVLLLFF---GAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLK 85 (146)
T ss_pred CCEEEEEE---ECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHH
Confidence 34444443 678999999999888661 46667777766533 444444
No 308
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=96.90 E-value=0.0047 Score=44.39 Aligned_cols=60 Identities=8% Similarity=0.112 Sum_probs=46.0
Q ss_pred CChhHHHHHHHHHhCCCCeEEEEecCC--HHHHHHHhhhhCCCcccEEEECCEEeechhhHH
Q 020081 28 KCGFSRQVVDILKDEKVEFGSFNILSD--NEVREGLKKFSNWPTFPQLYCKGELLGGCDIVI 87 (331)
Q Consensus 28 ~C~~C~~~~~~l~~~~i~~~~vdi~~~--~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~ 87 (331)
.|++|++++-+|.++|++|..++++-. ......+.+++...++|.+..||..+.....+.
T Consensus 8 ~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~ 69 (73)
T cd03052 8 QSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQII 69 (73)
T ss_pred CCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHH
Confidence 799999999999999999988877532 222344666889999999998888776555443
No 309
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.86 E-value=0.0031 Score=56.14 Aligned_cols=74 Identities=19% Similarity=0.339 Sum_probs=48.5
Q ss_pred cCCEEEEecCCCCCCCCcchHHHHHHHhhc---CCccEEEEec-----C-------------CH----------------
Q 020081 243 SSPVMLFMKGNPDSPRCGFSSKVVNALKEE---GVNFGSFDIL-----T-------------DE---------------- 285 (331)
Q Consensus 243 ~~~v~vy~k~~p~~~~Cp~C~~a~~~l~~~---~v~~~~~dv~-----~-------------~~---------------- 285 (331)
+..|++|+ .|.||||+++.+.+.++ +|.+..+.+. . ++
T Consensus 108 k~~I~vFt-----Dp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 108 KHVITVFT-----DITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CEEEEEEE-----CCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 34578899 89999999999888664 4555444221 0 10
Q ss_pred ------HHHHHHHhhcCCCCcCEEEE-CCeEEeeH---HHHHHHHH
Q 020081 286 ------EVRQGLKVYSNWPTFPQLYH-KGELIGGC---DIVMELKD 321 (331)
Q Consensus 286 ------~~~~~l~~~~g~~~vP~ifi-~g~~igg~---~~~~~~~~ 321 (331)
+...++.+..|.+..|++++ ||+.+.|+ ++|.++.+
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv~~~G~~~~G~~~~~~L~~~l~ 228 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIVLSNGTLVPGYQGPKEMKAFLD 228 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEEEcCCeEeeCCCCHHHHHHHHH
Confidence 11233444458888999988 99999997 44554433
No 310
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=96.81 E-value=0.0077 Score=43.26 Aligned_cols=67 Identities=12% Similarity=0.057 Sum_probs=49.4
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCC--HHHHHHHhhhhCCCcccEEEECCEEeechhhHHh
Q 020081 17 MLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSD--NEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIA 88 (331)
Q Consensus 17 vvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~--~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~~ 88 (331)
.+|... .|++|.+++-+|...|++|..+.++.. ......+.+++...++|.+..+|..+.....+..
T Consensus 3 ~Ly~~~-----~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~ 71 (76)
T cd03053 3 KLYGAA-----MSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITR 71 (76)
T ss_pred EEEeCC-----CChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHH
Confidence 455543 799999999999999999988877542 2233456668888999999888877765554443
No 311
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.76 E-value=0.0029 Score=50.04 Aligned_cols=56 Identities=16% Similarity=0.190 Sum_probs=30.3
Q ss_pred CCCCChhHHHHHHHHHhC------CCCeEEEEecCCH-------HHHH--HHhhhhCCCcccEEEECCEEeec
Q 020081 25 EEPKCGFSRQVVDILKDE------KVEFGSFNILSDN-------EVRE--GLKKFSNWPTFPQLYCKGELLGG 82 (331)
Q Consensus 25 ~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~-------~~~~--~~~~~~~~~t~P~ifi~g~~vgg 82 (331)
..+|||+|..+.+++++. +..+..+.+..-+ ..+. .++ ++++||+ .-+.+++.+.+
T Consensus 34 g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~-l~~IPTL-i~~~~~~rL~e 104 (119)
T PF06110_consen 34 GQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLK-LKGIPTL-IRWETGERLVE 104 (119)
T ss_dssp S-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC----SSSEE-EECTSS-EEEH
T ss_pred CCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceee-eeecceE-EEECCCCccch
Confidence 578999999999888773 4567777774322 3333 244 6676666 44445544443
No 312
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=96.76 E-value=0.0044 Score=56.50 Aligned_cols=58 Identities=10% Similarity=0.145 Sum_probs=37.5
Q ss_pred CCEEEEEecCCCCCCCcchHHHHHHhhc----CCCCeEEEecCCCHH--------HHHHHHhhcCCCCcceeee
Q 020081 136 SPVMLFMKGKPEEPKCGFSGKVVEILKQ----GKVDFGSFDILTDEE--------VRQGLKVYSNWSSYPQLYI 197 (331)
Q Consensus 136 ~~vvvf~~~~~~~~~C~~C~~~~~~l~~----~~i~~~~~di~~~~~--------~~~~l~~~~~~~~vP~ifi 197 (331)
.+.+|+.+ |++||++|+...+.|++ +++.+..++++.+.. -....++ +|+.++|++|+
T Consensus 166 ~k~~Lv~F---~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~-~gV~~vPtl~L 235 (271)
T TIGR02740 166 KKSGLFFF---FKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQ-LKIRTVPAVFL 235 (271)
T ss_pred CCeEEEEE---ECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHH-cCCCcCCeEEE
Confidence 34555555 45799999988887764 677777777764210 0122233 39999999944
No 313
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=96.73 E-value=0.013 Score=41.87 Aligned_cols=67 Identities=15% Similarity=0.115 Sum_probs=50.1
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechhhHHh
Q 020081 16 VMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIA 88 (331)
Q Consensus 16 vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~~ 88 (331)
+.+|.+. .|+.|++++-+|...|++|..+.++-+ .....+..++...++|.+..+|..+.....+..
T Consensus 2 ~~Ly~~~-----~~~~~~~v~~~L~~~~i~~e~~~v~~~-~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~ 68 (73)
T cd03076 2 YTLTYFP-----VRGRAEAIRLLLADQGISWEEERVTYE-EWQESLKPKMLFGQLPCFKDGDLTLVQSNAILR 68 (73)
T ss_pred cEEEEeC-----CcchHHHHHHHHHHcCCCCEEEEecHH-HhhhhhhccCCCCCCCEEEECCEEEEcHHHHHH
Confidence 3556543 599999999999999999998887532 223445557778899999999888766655544
No 314
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=96.68 E-value=0.0052 Score=47.79 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=32.3
Q ss_pred CEEEEEecCCCCCCCcchHHHHHHhhcC------CCCeEEEecCCC-HHHHHHHHhhcCCCCcceee
Q 020081 137 PVMLFMKGKPEEPKCGFSGKVVEILKQG------KVDFGSFDILTD-EEVRQGLKVYSNWSSYPQLY 196 (331)
Q Consensus 137 ~vvvf~~~~~~~~~C~~C~~~~~~l~~~------~i~~~~~di~~~-~~~~~~l~~~~~~~~vP~if 196 (331)
+.+|..+ |++||++|++..+.|++. ++.+..+. +.+ ++..+.++++ ++..+|+++
T Consensus 22 k~vvl~F---~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~~-~~~~~p~~~ 83 (114)
T cd02967 22 RPTLLFF---LSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAEHQRFLKKH-GLEAFPYVL 83 (114)
T ss_pred CeEEEEE---ECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHHHHHHHHHh-CCCCCcEEe
Confidence 3444445 458999999887777542 33333332 223 4445555555 777788865
No 315
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=96.68 E-value=0.0076 Score=52.64 Aligned_cols=71 Identities=25% Similarity=0.310 Sum_probs=55.7
Q ss_pred CCEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHH
Q 020081 244 SPVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELK 320 (331)
Q Consensus 244 ~~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~ 320 (331)
..+.+|+ .+.||+|.+++-+|+..|++|+.+.|+.. ....++.+..-...||++..||..+--...+..+.
T Consensus 9 ~~~~Ly~-----~~~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL 79 (211)
T PRK09481 9 SVMTLFS-----GPTDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYL 79 (211)
T ss_pred CeeEEeC-----CCCChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence 3478898 56899999999999999999999998643 22345667777789999999988777666665544
No 316
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=96.66 E-value=0.013 Score=41.86 Aligned_cols=64 Identities=13% Similarity=0.047 Sum_probs=49.1
Q ss_pred CCCCcchHHHHHHHhhcCCccEEEEecCC--HHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHH
Q 020081 256 SPRCGFSSKVVNALKEEGVNFGSFDILTD--EEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMEL 319 (331)
Q Consensus 256 ~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~--~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~ 319 (331)
.+.+|+|.+++-+|+..|++|+.+++... ....+++.+......+|.+..+|..+..-..+.++
T Consensus 6 ~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~Y 71 (73)
T cd03047 6 RRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRY 71 (73)
T ss_pred cCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHH
Confidence 46899999999999999999999887532 23345667777888999998888877655554443
No 317
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=96.63 E-value=0.0053 Score=48.10 Aligned_cols=91 Identities=14% Similarity=0.194 Sum_probs=51.4
Q ss_pred HHHHHHHHhhCCC-EEEEEecCCCCCCChhHHHHHH-HHHhCC------CCeE--EEEecC--CHHHHHHHhhhhCCCcc
Q 020081 3 LKSRLQQLLDSHP-VMLFMKGTPEEPKCGFSRQVVD-ILKDEK------VEFG--SFNILS--DNEVREGLKKFSNWPTF 70 (331)
Q Consensus 3 ~~~~~~~~i~~~~-vvvf~~~~~~~~~C~~C~~~~~-~l~~~~------i~~~--~vdi~~--~~~~~~~~~~~~~~~t~ 70 (331)
..+.+++..++++ ++||.. ++||++|+.+.+ +|.... -.|. .+|+.+ ...+...+. +.+.|++
T Consensus 6 ~~~a~~~Ak~~~K~llv~~~----~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~-~~~~P~~ 80 (114)
T cd02958 6 FEDAKQEAKSEKKWLLVYLQ----SEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYK-VDKYPHI 80 (114)
T ss_pred HHHHHHHHHhhCceEEEEEe----cCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhC-ccCCCeE
Confidence 4566666666666 445443 359999999854 565532 1344 445543 245555555 6677776
Q ss_pred cEEEE--CCEEeechhhHHhhhcccchHHHHHhc
Q 020081 71 PQLYC--KGELLGGCDIVIAMHKSGELKDVFRDH 102 (331)
Q Consensus 71 P~ifi--~g~~vgg~~~~~~~~~~~~l~~~l~~~ 102 (331)
.++- +|+.+....|... ..+|...|+++
T Consensus 81 -~~i~~~~g~~l~~~~G~~~---~~~f~~~L~~~ 110 (114)
T cd02958 81 -AIIDPRTGEVLKVWSGNIT---PEDLLSQLIEF 110 (114)
T ss_pred -EEEeCccCcEeEEEcCCCC---HHHHHHHHHHH
Confidence 3332 5777754444332 34566666554
No 318
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.62 E-value=0.011 Score=42.31 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=51.0
Q ss_pred CCCCcchHHHHHHHhhcCCccEEEEecCCH-HHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHH
Q 020081 256 SPRCGFSSKVVNALKEEGVNFGSFDILTDE-EVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMEL 319 (331)
Q Consensus 256 ~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~-~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~ 319 (331)
...||+|.+++-+|+..|++|+.+.+.... ....++.+......+|.+..+|..+.....+.++
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~Y 71 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEY 71 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHH
Confidence 568999999999999999999998886432 2335677777888999999999888876666554
No 319
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=96.62 E-value=0.013 Score=41.71 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=45.5
Q ss_pred CChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechhhHH
Q 020081 28 KCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIVI 87 (331)
Q Consensus 28 ~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~ 87 (331)
.|+.|++++-+|..+|++|..+.++........+..++...++|.+..+|..+.....+.
T Consensus 8 ~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~ 67 (72)
T cd03039 8 IRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAIL 67 (72)
T ss_pred CcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHH
Confidence 699999999999999999998887643222233555788889999998887776554443
No 320
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.037 Score=51.45 Aligned_cols=84 Identities=17% Similarity=0.288 Sum_probs=56.8
Q ss_pred hhhHHHHHHHHhhcCCEEEEecCCCCCCCCcchHHHHHHHhhcCC-----ccEEEEecCCHHHHHHHHhhcCCCCcCEEE
Q 020081 230 KENLEDRLKNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEEGV-----NFGSFDILTDEEVRQGLKVYSNWPTFPQLY 304 (331)
Q Consensus 230 ~~~~~~~~~~~~~~~~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v-----~~~~~dv~~~~~~~~~l~~~~g~~~vP~if 304 (331)
.+++.++++++-..-...-|.. .+|..|..+.+.|+-..+ ...-+| ..-++++... -+..+||+||
T Consensus 104 ~q~vieqik~i~g~~~FETy~S-----ltC~nCPDVVQALN~msvlNp~I~H~~Id---Ga~Fq~Evea-r~IMaVPtvf 174 (520)
T COG3634 104 DQDVIEQIKAIDGDFHFETYFS-----LTCHNCPDVVQALNLMSVLNPRIKHTAID---GALFQDEVEA-RNIMAVPTVF 174 (520)
T ss_pred hHHHHHHHHhcCCceeEEEEEE-----eeccCChHHHHHHHHHHhcCCCceeEEec---chhhHhHHHh-ccceecceEE
Confidence 5678888888888888888873 478888888887765533 333332 3444555544 3778999999
Q ss_pred ECCeEEee----HHHHHHHHHc
Q 020081 305 HKGELIGG----CDIVMELKDN 322 (331)
Q Consensus 305 i~g~~igg----~~~~~~~~~~ 322 (331)
.||+.+|. .+++.+-..+
T Consensus 175 lnGe~fg~GRmtleeilaki~~ 196 (520)
T COG3634 175 LNGEEFGQGRMTLEEILAKIDT 196 (520)
T ss_pred EcchhhcccceeHHHHHHHhcC
Confidence 99998883 3444444444
No 321
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.61 E-value=0.0072 Score=53.15 Aligned_cols=64 Identities=17% Similarity=0.276 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc----CCCCeEEEecC-----------CCHHHHHHHHhhcCC
Q 020081 125 LTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ----GKVDFGSFDIL-----------TDEEVRQGLKVYSNW 189 (331)
Q Consensus 125 ~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~----~~i~~~~~di~-----------~~~~~~~~l~~~~~~ 189 (331)
-...++++.++..+++|+.+ +|+||....++|+. +|+....|+++ .|..++ +++ |+
T Consensus 111 ~~~~l~~la~~~gL~~F~~~-----~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~---~~l-~v 181 (215)
T PF13728_consen 111 RDKALKQLAQKYGLFFFYRS-----DCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQA---KRL-GV 181 (215)
T ss_pred HHHHHHHHhhCeEEEEEEcC-----CCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHH---HHc-CC
Confidence 34456677778888888875 79999988888764 78888888776 245555 333 99
Q ss_pred CCcceeee
Q 020081 190 SSYPQLYI 197 (331)
Q Consensus 190 ~~vP~ifi 197 (331)
..+|++|+
T Consensus 182 ~~~Pal~L 189 (215)
T PF13728_consen 182 KVTPALFL 189 (215)
T ss_pred CcCCEEEE
Confidence 99999965
No 322
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=96.58 E-value=0.008 Score=47.83 Aligned_cols=36 Identities=14% Similarity=0.112 Sum_probs=23.5
Q ss_pred CCEEEEEecCCCCCCCcchHHHHHHhhc----CCCCeEEEecC
Q 020081 136 SPVMLFMKGKPEEPKCGFSGKVVEILKQ----GKVDFGSFDIL 174 (331)
Q Consensus 136 ~~vvvf~~~~~~~~~C~~C~~~~~~l~~----~~i~~~~~di~ 174 (331)
.+++|+.+ |++||++|+...+.|++ .++.+..++.+
T Consensus 25 gk~vvv~F---~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~ 64 (127)
T cd03010 25 GKPYLLNV---WASWCAPCREEHPVLMALARQGRVPIYGINYK 64 (127)
T ss_pred CCEEEEEE---EcCcCHHHHHHHHHHHHHHHhcCcEEEEEECC
Confidence 44555555 45799999988777765 34666666643
No 323
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=96.55 E-value=0.014 Score=41.72 Aligned_cols=59 Identities=19% Similarity=0.122 Sum_probs=42.5
Q ss_pred CChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhC-CCcccEEEECCEEeechhhHH
Q 020081 28 KCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSN-WPTFPQLYCKGELLGGCDIVI 87 (331)
Q Consensus 28 ~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~-~~t~P~ifi~g~~vgg~~~~~ 87 (331)
.||+|.+++-+|...|++|..++++.... ...+.+++. ..++|.+..+|..+.....+.
T Consensus 8 ~sp~~~~v~~~l~~~gl~~~~~~~~~~~~-~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~ 67 (74)
T cd03058 8 ASPFVLRVRIALALKGVPYEYVEEDLGNK-SELLLASNPVHKKIPVLLHNGKPICESLIIV 67 (74)
T ss_pred CCchHHHHHHHHHHcCCCCEEEEeCcccC-CHHHHHhCCCCCCCCEEEECCEEeehHHHHH
Confidence 79999999999999999998887754321 123444555 378999988887665554443
No 324
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.007 Score=43.03 Aligned_cols=55 Identities=22% Similarity=0.399 Sum_probs=41.5
Q ss_pred CCCcchHHHHHHhhcCCCCeEEEecCCC-HHHHH------------HHHhhcCCCCcceeee-cCccccc
Q 020081 149 PKCGFSGKVVEILKQGKVDFGSFDILTD-EEVRQ------------GLKVYSNWSSYPQLYI-KGELIGG 204 (331)
Q Consensus 149 ~~C~~C~~~~~~l~~~~i~~~~~di~~~-~~~~~------------~l~~~~~~~~vP~ifi-~G~~vgg 204 (331)
..||.|..++..|...+++|+.|||... +.+.+ ..+.. |.-++|.+.. ||+.|-|
T Consensus 10 n~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~-gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 10 NLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSN-GYIGIPALLTDDGKVVLG 78 (85)
T ss_pred ccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhc-CcccceEEEeCCCcEEEe
Confidence 4799999999999999999999999754 22322 22333 8888999955 5676655
No 325
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.0076 Score=47.05 Aligned_cols=46 Identities=15% Similarity=0.214 Sum_probs=31.9
Q ss_pred CCCCChhHHHHHHHHHh------CCCCeEEEEecCCH-------HHHHHHhhhhCCCcc
Q 020081 25 EEPKCGFSRQVVDILKD------EKVEFGSFNILSDN-------EVREGLKKFSNWPTF 70 (331)
Q Consensus 25 ~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~-------~~~~~~~~~~~~~t~ 70 (331)
..+|||+|.+|-+++.+ .++.|..+++.+.+ ..|....-++++||+
T Consensus 41 GqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTL 99 (128)
T KOG3425|consen 41 GQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTL 99 (128)
T ss_pred CCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeeccee
Confidence 47899999999998877 26778899986432 344444423566665
No 326
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.47 E-value=0.01 Score=52.12 Aligned_cols=63 Identities=19% Similarity=0.308 Sum_probs=46.2
Q ss_pred HHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHh----CCCCeEEEEecC-----------CHHHHHHHhhhhCCC
Q 020081 4 KSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKD----EKVEFGSFNILS-----------DNEVREGLKKFSNWP 68 (331)
Q Consensus 4 ~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~----~~i~~~~vdi~~-----------~~~~~~~~~~~~~~~ 68 (331)
...++++..+..+++|..+ .|++|+...++|+. +|+....|++|. +..++..++ +.
T Consensus 112 ~~~l~~la~~~gL~~F~~~-----~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~----v~ 182 (215)
T PF13728_consen 112 DKALKQLAQKYGLFFFYRS-----DCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLG----VK 182 (215)
T ss_pred HHHHHHHhhCeEEEEEEcC-----CCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcC----CC
Confidence 4467777777788888877 89999999888887 488888888873 355555555 45
Q ss_pred cccEEEE
Q 020081 69 TFPQLYC 75 (331)
Q Consensus 69 t~P~ifi 75 (331)
++|.+|.
T Consensus 183 ~~Pal~L 189 (215)
T PF13728_consen 183 VTPALFL 189 (215)
T ss_pred cCCEEEE
Confidence 5666665
No 327
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=96.46 E-value=0.0061 Score=51.20 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=20.2
Q ss_pred CCCCChhHHHHHHHHHh-------CCCCeEEEEecCC
Q 020081 25 EEPKCGFSRQVVDILKD-------EKVEFGSFNILSD 54 (331)
Q Consensus 25 ~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~~ 54 (331)
|++||++|+...+.|.+ .++.+..++.+..
T Consensus 69 ~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~ 105 (173)
T PRK03147 69 WGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDET 105 (173)
T ss_pred ECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 45699999986655544 2466777776544
No 328
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.44 E-value=0.005 Score=66.38 Aligned_cols=26 Identities=15% Similarity=-0.083 Sum_probs=19.0
Q ss_pred CCEEEEEecCCCCCCChhHHHHHHHHHhC
Q 020081 14 HPVMLFMKGTPEEPKCGFSRQVVDILKDE 42 (331)
Q Consensus 14 ~~vvvf~~~~~~~~~C~~C~~~~~~l~~~ 42 (331)
.++||..+ |+.||++|+...+.|+++
T Consensus 420 GK~vll~F---WAsWC~pC~~e~P~L~~l 445 (1057)
T PLN02919 420 GKVVILDF---WTYCCINCMHVLPDLEFL 445 (1057)
T ss_pred CCEEEEEE---ECCcChhHHhHhHHHHHH
Confidence 44444443 788999999988888763
No 329
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.44 E-value=0.015 Score=41.48 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=42.4
Q ss_pred CChhHHHHHHHHHh--CCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEE-CCEEeechhhH
Q 020081 28 KCGFSRQVVDILKD--EKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYC-KGELLGGCDIV 86 (331)
Q Consensus 28 ~C~~C~~~~~~l~~--~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi-~g~~vgg~~~~ 86 (331)
.||+|.+++-.|.. ++++|..+.++.... ...+.+++...++|.+.. ||..+.....+
T Consensus 8 ~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~~~vP~l~~~~g~~l~es~aI 68 (73)
T cd03049 8 TSPYVRKVRVAAHETGLGDDVELVLVNPWSD-DESLLAVNPLGKIPALVLDDGEALFDSRVI 68 (73)
T ss_pred CCcHHHHHHHHHHHhCCCCCcEEEEcCcccC-ChHHHHhCCCCCCCEEEECCCCEEECHHHH
Confidence 79999999999999 889998888864321 223444778889998875 67666554443
No 330
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.015 Score=47.71 Aligned_cols=92 Identities=14% Similarity=0.196 Sum_probs=58.0
Q ss_pred HHHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC---------CCCeEEEEecC----------------CHHH
Q 020081 3 LKSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE---------KVEFGSFNILS----------------DNEV 57 (331)
Q Consensus 3 ~~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~---------~i~~~~vdi~~----------------~~~~ 57 (331)
+.+..+.+...++-++.+++. +.|+||.+++.-+... +..+..+++.. ..++
T Consensus 31 ~~~d~ksi~~~~Kylllmfes---~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~EL 107 (182)
T COG2143 31 VFDDNKSISPNDKYLLLMFES---NGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEEL 107 (182)
T ss_pred hHHHHHhcCccCcEEEEEEcC---CCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHH
Confidence 445666666666666555543 4899999998766552 23344444421 1478
Q ss_pred HHHHhhhhCCCcccEEEE-CCEEeechhhHHhhhcccchHHHHHhc
Q 020081 58 REGLKKFSNWPTFPQLYC-KGELLGGCDIVIAMHKSGELKDVFRDH 102 (331)
Q Consensus 58 ~~~~~~~~~~~t~P~ifi-~g~~vgg~~~~~~~~~~~~l~~~l~~~ 102 (331)
+..+. +++.||+ .+|. +|+.|+..-|.+. +.++...++-.
T Consensus 108 a~kf~-vrstPtf-vFfdk~Gk~Il~lPGY~p---pe~Fl~vlkYV 148 (182)
T COG2143 108 AQKFA-VRSTPTF-VFFDKTGKTILELPGYMP---PEQFLAVLKYV 148 (182)
T ss_pred HHHhc-cccCceE-EEEcCCCCEEEecCCCCC---HHHHHHHHHHH
Confidence 88887 8888888 4444 4678876665544 56676666655
No 331
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=96.39 E-value=0.012 Score=43.24 Aligned_cols=66 Identities=12% Similarity=0.159 Sum_probs=39.8
Q ss_pred hHHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc---------CCCCeEEEecCCCHHHHHHHHhhcCCCCcce
Q 020081 124 TLTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ---------GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQ 194 (331)
Q Consensus 124 ~~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~---------~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~ 194 (331)
+..+.+++..+.++.++..++ ++||++|+.+.+.+-. .++-+..+|.+...... .+.. ..+|+
T Consensus 5 d~~~al~~A~~~~kpvlv~f~---a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~-~~~~----~~~P~ 76 (82)
T PF13899_consen 5 DYEEALAEAKKEGKPVLVDFG---ADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA-QFDR----QGYPT 76 (82)
T ss_dssp SHHHHHHHHHHHTSEEEEEEE---TTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH-HHHH----CSSSE
T ss_pred hHHHHHHHHHHcCCCEEEEEE---CCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH-HhCC----ccCCE
Confidence 455667776666666666665 3789999988776633 24445566765433322 2222 44899
Q ss_pred eee
Q 020081 195 LYI 197 (331)
Q Consensus 195 ifi 197 (331)
+++
T Consensus 77 ~~~ 79 (82)
T PF13899_consen 77 FFF 79 (82)
T ss_dssp EEE
T ss_pred EEE
Confidence 854
No 332
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=96.39 E-value=0.0099 Score=46.17 Aligned_cols=55 Identities=18% Similarity=0.360 Sum_probs=31.2
Q ss_pred CCEEEEEecCCCCCCChhHHHHHHHHHhC------CCCeEEEEecCC-HHHHHHHhhhhCCCcccEEE
Q 020081 14 HPVMLFMKGTPEEPKCGFSRQVVDILKDE------KVEFGSFNILSD-NEVREGLKKFSNWPTFPQLY 74 (331)
Q Consensus 14 ~~vvvf~~~~~~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~-~~~~~~~~~~~~~~t~P~if 74 (331)
..++|+. |++||++|+...+.|+++ ++.+..+ .+.+ .+..+.+. -.+...+|.++
T Consensus 22 k~vvl~F----~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v-~~~~~~~~~~~~~-~~~~~~~p~~~ 83 (114)
T cd02967 22 RPTLLFF----LSPTCPVCKKLLPVIRSIARAEADWLDVVLA-SDGEKAEHQRFLK-KHGLEAFPYVL 83 (114)
T ss_pred CeEEEEE----ECCCCcchHhHhHHHHHHHHHhcCCcEEEEE-eCCCHHHHHHHHH-HhCCCCCcEEe
Confidence 3455554 467999999988877763 2344433 2333 34344444 44555577654
No 333
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=96.37 E-value=0.02 Score=51.13 Aligned_cols=75 Identities=20% Similarity=0.259 Sum_probs=57.7
Q ss_pred EEEEecCCC---CCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHHH
Q 020081 246 VMLFMKGNP---DSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKD 321 (331)
Q Consensus 246 v~vy~k~~p---~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~~ 321 (331)
+.+|+|-.. .-+.||+|++++-.|..+|++|+.+.++.... .+++.+..-...||++..||..+..-..+.++.+
T Consensus 3 ~el~~ka~~~~~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~ 80 (236)
T TIGR00862 3 IELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLE 80 (236)
T ss_pred eEEEEecCCCCCcCCCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHH
Confidence 556655332 23579999999999999999999998864321 3557777777899999999999988888877766
No 334
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=96.35 E-value=0.024 Score=40.48 Aligned_cols=62 Identities=11% Similarity=0.071 Sum_probs=49.0
Q ss_pred cchHHHHHHHhhcCCccEEEEecCC--HHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHHH
Q 020081 260 GFSSKVVNALKEEGVNFGSFDILTD--EEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKD 321 (331)
Q Consensus 260 p~C~~a~~~l~~~~v~~~~~dv~~~--~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~~ 321 (331)
+.|.+++-+|...|++|+.+.++.. .....++.+......+|++..+|..+.....+..+.+
T Consensus 9 ~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~ 72 (76)
T cd03046 9 SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLA 72 (76)
T ss_pred CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 5688999999999999999887642 2334556677788899999999998888777777654
No 335
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.34 E-value=0.01 Score=53.81 Aligned_cols=93 Identities=16% Similarity=0.250 Sum_probs=64.1
Q ss_pred HHHHHHhhC-CC---EEEEEecCCCCCCChhHHHHHHHHHhC-----CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEE
Q 020081 5 SRLQQLLDS-HP---VMLFMKGTPEEPKCGFSRQVVDILKDE-----KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYC 75 (331)
Q Consensus 5 ~~~~~~i~~-~~---vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi 75 (331)
+.+.+.|.. .+ |||+.+. +.++.|..+-..|..+ .++|+.+.....+ +-..|. ..+.||+ .+|+
T Consensus 134 e~~l~~ie~~~~~~~VVVHiY~----~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~-~~~LPtl-lvYk 206 (265)
T PF02114_consen 134 EEFLDAIEKESKSTWVVVHIYE----PGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFP-DKNLPTL-LVYK 206 (265)
T ss_dssp HHHHHHCCTSSTT-EEEEEEE-----TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS--TTC-SEE-EEEE
T ss_pred hhHHHHHhccCCCcEEEEEEEe----CCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCc-ccCCCEE-EEEE
Confidence 345555543 22 5665543 4899999999888885 6889999886554 334455 5789999 9999
Q ss_pred CCEEeechhhHHhhhc----ccchHHHHHhcCc
Q 020081 76 KGELLGGCDIVIAMHK----SGELKDVFRDHGI 104 (331)
Q Consensus 76 ~g~~vgg~~~~~~~~~----~~~l~~~l~~~~~ 104 (331)
+|+.++.+.++..+.. ...|+.+|..+|+
T Consensus 207 ~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~ 239 (265)
T PF02114_consen 207 NGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGV 239 (265)
T ss_dssp TTEEEEEECTGGGCT-TT--HHHHHHHHHTTTS
T ss_pred CCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCC
Confidence 9999987766654332 2368899999986
No 336
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.33 E-value=0.014 Score=50.52 Aligned_cols=71 Identities=21% Similarity=0.357 Sum_probs=47.0
Q ss_pred cCCEEEEecCCCCCCCCcchHHHHHHHh--hcCCccEEEEec--C---------------C-------------------
Q 020081 243 SSPVMLFMKGNPDSPRCGFSSKVVNALK--EEGVNFGSFDIL--T---------------D------------------- 284 (331)
Q Consensus 243 ~~~v~vy~k~~p~~~~Cp~C~~a~~~l~--~~~v~~~~~dv~--~---------------~------------------- 284 (331)
+..|++|+ .|.||||+++.+.+. ..++.+..+.+. . +
T Consensus 78 ~~~i~~f~-----D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 78 KRVVYVFT-----DPDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CEEEEEEE-----CCCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 34577788 789999999999997 345555555431 1 0
Q ss_pred -----HHHHHHHHhhcCCCCcCEEEE-CCeEEeeHHHHHH
Q 020081 285 -----EEVRQGLKVYSNWPTFPQLYH-KGELIGGCDIVME 318 (331)
Q Consensus 285 -----~~~~~~l~~~~g~~~vP~ifi-~g~~igg~~~~~~ 318 (331)
-.....+.+..|..++|.+++ ||+.+.|+....+
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii~~~G~~~~G~~~~~~ 192 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIVLADGRVVPGAPPAAQ 192 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEEECCCeEecCCCCHHH
Confidence 011123444558888999988 5999999865433
No 337
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=96.33 E-value=0.017 Score=40.86 Aligned_cols=59 Identities=12% Similarity=0.112 Sum_probs=44.2
Q ss_pred CChhHHHHHHHHHhCCCCeEEEEecCC--HHHHHHHhhhhCCCcccEEEECCEEeechhhH
Q 020081 28 KCGFSRQVVDILKDEKVEFGSFNILSD--NEVREGLKKFSNWPTFPQLYCKGELLGGCDIV 86 (331)
Q Consensus 28 ~C~~C~~~~~~l~~~~i~~~~vdi~~~--~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~ 86 (331)
.|+.|.+++-+|..+|++|..+.++.. ......+.+++...++|.+..+|..+.....+
T Consensus 8 ~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI 68 (73)
T cd03042 8 RSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAI 68 (73)
T ss_pred CCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHH
Confidence 689999999999999999988777532 22234455578888999999888877554443
No 338
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=96.32 E-value=0.025 Score=40.75 Aligned_cols=63 Identities=17% Similarity=0.182 Sum_probs=47.0
Q ss_pred CCCcchHHHHHHHhhcCCccEEEEecCCH--HHHHHHHhhcCCCCcCEEEEC-CeEEeeHHHHHHHH
Q 020081 257 PRCGFSSKVVNALKEEGVNFGSFDILTDE--EVRQGLKVYSNWPTFPQLYHK-GELIGGCDIVMELK 320 (331)
Q Consensus 257 ~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~--~~~~~l~~~~g~~~vP~ifi~-g~~igg~~~~~~~~ 320 (331)
+.| .|.+++-+|...|++|+.++++... ....++.+......+|++..+ |..+.....+.++.
T Consensus 7 ~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL 72 (77)
T cd03057 7 PGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYL 72 (77)
T ss_pred CCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHH
Confidence 344 4888999999999999998876432 234567777888999999887 77777666666554
No 339
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=96.24 E-value=0.0085 Score=48.20 Aligned_cols=47 Identities=13% Similarity=0.253 Sum_probs=28.6
Q ss_pred HHHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHH-HHhC------CCCeEEEEec
Q 020081 3 LKSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDI-LKDE------KVEFGSFNIL 52 (331)
Q Consensus 3 ~~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~-l~~~------~i~~~~vdi~ 52 (331)
.++.++...++++.|+..++ +.||++|+.+... +... +=.|..++++
T Consensus 12 ~eeal~~Ak~~~Kpvmv~f~---sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~ 65 (130)
T cd02960 12 YEEGLYKAKKSNKPLMVIHH---LEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLV 65 (130)
T ss_pred HHHHHHHHHHCCCeEEEEEe---CCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEE
Confidence 45667777777764443333 4599999999775 3332 2247755554
No 340
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=96.22 E-value=0.0085 Score=45.75 Aligned_cols=37 Identities=27% Similarity=0.228 Sum_probs=24.8
Q ss_pred CCCChhHHHHHHHHHhC-------CCCeEEEEecCC--HHHHHHHh
Q 020081 26 EPKCGFSRQVVDILKDE-------KVEFGSFNILSD--NEVREGLK 62 (331)
Q Consensus 26 ~~~C~~C~~~~~~l~~~-------~i~~~~vdi~~~--~~~~~~~~ 62 (331)
++||++|++..+.|.++ ++.+..++++.+ .++++.+.
T Consensus 28 ~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~ 73 (116)
T cd02966 28 ASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLK 73 (116)
T ss_pred cccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHH
Confidence 45999999776666553 567888888874 34444433
No 341
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=96.21 E-value=0.015 Score=49.55 Aligned_cols=34 Identities=24% Similarity=0.424 Sum_probs=23.7
Q ss_pred CEEEEEecCCCCCCChhHHHHHHHHHh----CCCCeEEEEecC
Q 020081 15 PVMLFMKGTPEEPKCGFSRQVVDILKD----EKVEFGSFNILS 53 (331)
Q Consensus 15 ~vvvf~~~~~~~~~C~~C~~~~~~l~~----~~i~~~~vdi~~ 53 (331)
++|+|. +.|||+|++..+.|.+ +++.+..|+++.
T Consensus 72 ~lV~Fw-----aswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~ 109 (181)
T PRK13728 72 KVVLFM-----QGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDG 109 (181)
T ss_pred eEEEEE-----CCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCC
Confidence 355554 4499999988655555 588887777763
No 342
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.21 E-value=0.0092 Score=45.44 Aligned_cols=45 Identities=20% Similarity=0.104 Sum_probs=34.9
Q ss_pred CCCcchHHHHHHhhc------CCCCeEEEecCCCHHHHHHHHhhcCCC--Ccceeee
Q 020081 149 PKCGFSGKVVEILKQ------GKVDFGSFDILTDEEVRQGLKVYSNWS--SYPQLYI 197 (331)
Q Consensus 149 ~~C~~C~~~~~~l~~------~~i~~~~~di~~~~~~~~~l~~~~~~~--~vP~ifi 197 (331)
+||+.|..+.+.|++ ..+.|..+|+++.+++.+ . +|+. ++|++.+
T Consensus 22 ~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~---~-~~i~~~~~P~~~~ 74 (103)
T cd02982 22 KDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLE---Y-FGLKEEDLPVIAI 74 (103)
T ss_pred CChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHH---H-cCCChhhCCEEEE
Confidence 689999999988875 357788899887666653 3 3898 9999943
No 343
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=96.20 E-value=0.011 Score=43.57 Aligned_cols=62 Identities=13% Similarity=0.122 Sum_probs=45.5
Q ss_pred CCCChhHHHHHHHHHhCCCCeEEEEecCC--HHHHHHHhhhhCCCcccEEEEC-CEEeechhhHHh
Q 020081 26 EPKCGFSRQVVDILKDEKVEFGSFNILSD--NEVREGLKKFSNWPTFPQLYCK-GELLGGCDIVIA 88 (331)
Q Consensus 26 ~~~C~~C~~~~~~l~~~~i~~~~vdi~~~--~~~~~~~~~~~~~~t~P~ifi~-g~~vgg~~~~~~ 88 (331)
-+||++|.+++-+|..++++|..+.++.. ......+ +++...++|.+..+ |..+.....+..
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~ 77 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAE 77 (84)
T ss_pred CCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHH
Confidence 35899999999999999999988776532 2333344 46778899999888 777765554443
No 344
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=96.12 E-value=0.011 Score=46.69 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=13.6
Q ss_pred CCCChhHHHHHHHHHhC
Q 020081 26 EPKCGFSRQVVDILKDE 42 (331)
Q Consensus 26 ~~~C~~C~~~~~~l~~~ 42 (331)
++||++|+...+.|..+
T Consensus 29 ~~~C~~C~~~~~~l~~~ 45 (123)
T cd03011 29 ATWCPVCRFTSPTVNQL 45 (123)
T ss_pred CCcChhhhhhChHHHHH
Confidence 45999999988777753
No 345
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=96.12 E-value=0.011 Score=42.04 Aligned_cols=61 Identities=10% Similarity=0.128 Sum_probs=43.5
Q ss_pred CChhHHHHHHHHHhCCCCeEEEEecC--C-HHHHHHHhhhhCCCcccEEEE-CCEEeechhhHHh
Q 020081 28 KCGFSRQVVDILKDEKVEFGSFNILS--D-NEVREGLKKFSNWPTFPQLYC-KGELLGGCDIVIA 88 (331)
Q Consensus 28 ~C~~C~~~~~~l~~~~i~~~~vdi~~--~-~~~~~~~~~~~~~~t~P~ifi-~g~~vgg~~~~~~ 88 (331)
+||+|+++.-+|..+|++|...-+.. . ......+.++++..++|.+.. +|+.+.....+.+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~ 65 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILE 65 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHH
Confidence 49999999999999999988766522 1 112244566889999999997 7897776655544
No 346
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=96.10 E-value=0.012 Score=46.14 Aligned_cols=69 Identities=16% Similarity=0.107 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHH-HhhcCCC------CeE--EEecCCCHHHHHHHHhhcCCCCccee
Q 020081 125 LTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVE-ILKQGKV------DFG--SFDILTDEEVRQGLKVYSNWSSYPQL 195 (331)
Q Consensus 125 ~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~-~l~~~~i------~~~--~~di~~~~~~~~~l~~~~~~~~vP~i 195 (331)
..+.++...+.++.++...++ +||++|+.+.+ +|....+ .|. .+|+.. ++..+.. +.+++.++|++
T Consensus 6 ~~~a~~~Ak~~~K~llv~~~~---~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~-~e~~~~~-~~~~~~~~P~~ 80 (114)
T cd02958 6 FEDAKQEAKSEKKWLLVYLQS---EDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS-SEGQRFL-QSYKVDKYPHI 80 (114)
T ss_pred HHHHHHHHHhhCceEEEEEec---CCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC-ccHHHHH-HHhCccCCCeE
Confidence 445566666666665555543 78999998754 5654222 344 345543 4444444 44499999999
Q ss_pred -eec
Q 020081 196 -YIK 198 (331)
Q Consensus 196 -fi~ 198 (331)
|++
T Consensus 81 ~~i~ 84 (114)
T cd02958 81 AIID 84 (114)
T ss_pred EEEe
Confidence 553
No 347
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=96.07 E-value=0.012 Score=53.57 Aligned_cols=63 Identities=13% Similarity=0.185 Sum_probs=48.5
Q ss_pred CCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHHH
Q 020081 258 RCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKD 321 (331)
Q Consensus 258 ~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~~ 321 (331)
.||+|.++.-+|+++|++|+.+.|+... ..+++.+..-...||++..+|..+.-...+.++.+
T Consensus 72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~ 134 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWFLKISPEGKVPVVKLDEKWVADSDVITQALE 134 (265)
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence 6999999999999999999988775432 12345566767799999999988876666665543
No 348
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=96.05 E-value=0.012 Score=50.73 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=21.1
Q ss_pred CCEEEEEecCCCCCCCcchHHHHHHhhc----CCCCeEEEe
Q 020081 136 SPVMLFMKGKPEEPKCGFSGKVVEILKQ----GKVDFGSFD 172 (331)
Q Consensus 136 ~~vvvf~~~~~~~~~C~~C~~~~~~l~~----~~i~~~~~d 172 (331)
.+.++..| |++|||+|++..+.+++ .++.+..+.
T Consensus 74 gk~vvl~F---~atwCp~C~~~lp~l~~~~~~~~~~vv~Is 111 (189)
T TIGR02661 74 GRPTLLMF---TAPSCPVCDKLFPIIKSIARAEETDVVMIS 111 (189)
T ss_pred CCEEEEEE---ECCCChhHHHHHHHHHHHHHhcCCcEEEEe
Confidence 34444444 45799999987666643 455555554
No 349
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.04 E-value=0.011 Score=44.88 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=39.8
Q ss_pred CCCCChhHHHHHHHHHhC------CCCeEEEEec-CCHHHHHHHhh-hhCCCcccEEEECCEEe
Q 020081 25 EEPKCGFSRQVVDILKDE------KVEFGSFNIL-SDNEVREGLKK-FSNWPTFPQLYCKGELL 80 (331)
Q Consensus 25 ~~~~C~~C~~~~~~l~~~------~i~~~~vdi~-~~~~~~~~~~~-~~~~~t~P~ifi~g~~v 80 (331)
|++|||+|+.+.+.|.+. .+.+..+|+. .++.....+.. +...|++ .++.+|+.+
T Consensus 40 ~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~ 102 (127)
T COG0526 40 WAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTL-LLFKDGKEV 102 (127)
T ss_pred EcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeE-EEEeCcchh
Confidence 356999999999888884 3678888886 66777777763 4566776 466777653
No 350
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=96.04 E-value=0.014 Score=49.05 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=32.4
Q ss_pred CCCCCcchHHHHHHhhc-------CCCCeEEEecCCCHHH-H-----------------HHHHhhcCCCCcceee-ec--
Q 020081 147 EEPKCGFSGKVVEILKQ-------GKVDFGSFDILTDEEV-R-----------------QGLKVYSNWSSYPQLY-IK-- 198 (331)
Q Consensus 147 ~~~~C~~C~~~~~~l~~-------~~i~~~~~di~~~~~~-~-----------------~~l~~~~~~~~vP~if-i~-- 198 (331)
|++||++|+...+.|++ .++.+..++.+.+++. + ..+.+.+|+..+|++| ++
T Consensus 69 ~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~ 148 (173)
T PRK03147 69 WGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLPTTFLIDKD 148 (173)
T ss_pred ECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcCeEEEECCC
Confidence 34799999876555532 3466677776544321 1 2223445888888764 43
Q ss_pred Cccc
Q 020081 199 GELI 202 (331)
Q Consensus 199 G~~v 202 (331)
|+.+
T Consensus 149 g~i~ 152 (173)
T PRK03147 149 GKVV 152 (173)
T ss_pred CcEE
Confidence 5444
No 351
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=96.02 E-value=0.0085 Score=46.76 Aligned_cols=36 Identities=25% Similarity=0.496 Sum_probs=25.0
Q ss_pred CCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHH
Q 020081 256 SPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGL 291 (331)
Q Consensus 256 ~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l 291 (331)
.|.|.-|++|.++|+++|++|+++|+..++--+++|
T Consensus 3 ~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el 38 (110)
T PF03960_consen 3 NPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREEL 38 (110)
T ss_dssp -TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHH
Confidence 469999999999999999999999998754333333
No 352
>PRK10026 arsenate reductase; Provisional
Probab=96.00 E-value=0.0091 Score=48.75 Aligned_cols=43 Identities=16% Similarity=0.417 Sum_probs=35.5
Q ss_pred CEEEEEecCCCCCCCcchHHHHHHhhcCCCCeEEEecCCC----HHHHHHHH
Q 020081 137 PVMLFMKGKPEEPKCGFSGKVVEILKQGKVDFGSFDILTD----EEVRQGLK 184 (331)
Q Consensus 137 ~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~~di~~~----~~~~~~l~ 184 (331)
.+.+|.. |.|..|++++++|+++++.|+.+|+.++ +++..++.
T Consensus 3 ~i~iY~~-----p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~ 49 (141)
T PRK10026 3 NITIYHN-----PACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIA 49 (141)
T ss_pred EEEEEeC-----CCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHH
Confidence 5678877 6899999999999999999999999876 45555553
No 353
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=95.97 E-value=0.023 Score=49.59 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=44.4
Q ss_pred CChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEE-ECCEEeechhhHHh
Q 020081 28 KCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLY-CKGELLGGCDIVIA 88 (331)
Q Consensus 28 ~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~if-i~g~~vgg~~~~~~ 88 (331)
.||+|++++-+|..+|++|..+++..... ...+ +++...++|++. .||..+.+...+..
T Consensus 7 ~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~~~-~~np~g~vP~l~~~~g~~l~es~~I~~ 66 (209)
T TIGR02182 7 HCPFCVRARMIFGLKNIPVEKHVLLNDDE-ETPI-RMIGAKQVPILQKDDGRAMPESLDIVA 66 (209)
T ss_pred CCChHHHHHHHHHHcCCCeEEEECCCCcc-hhHH-HhcCCCCcceEEeeCCeEeccHHHHHH
Confidence 79999999999999999999888754432 2223 367778999987 67877776654443
No 354
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=95.96 E-value=0.022 Score=45.95 Aligned_cols=71 Identities=11% Similarity=0.226 Sum_probs=48.1
Q ss_pred HHHHHhcC-CCEEEEEecCCCCCCCcchHHHHHHhh----cC---CCCeEEEecCCCHHHHHHHHhhcCCCCccee--ee
Q 020081 128 RLESLINS-SPVMLFMKGKPEEPKCGFSGKVVEILK----QG---KVDFGSFDILTDEEVRQGLKVYSNWSSYPQL--YI 197 (331)
Q Consensus 128 ~~~~~~~~-~~vvvf~~~~~~~~~C~~C~~~~~~l~----~~---~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i--fi 197 (331)
.+++.+.. ...+||..+.|. .+|-+..+.=+|. +. ++.+..+|++.+++++ .++ |+.++|++ |-
T Consensus 26 ~~~~~~~~~~~~vl~~~gdp~--r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA---~~f-gV~siPTLl~Fk 99 (132)
T PRK11509 26 RLDDWLTQAPDGVVLLSSDPK--RTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIG---DRF-GVFRFPATLVFT 99 (132)
T ss_pred cHHHHHhCCCcEEEEeCCCCC--cCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHH---HHc-CCccCCEEEEEE
Confidence 35555544 456677777665 4566643333332 22 3779999999999888 444 99999999 77
Q ss_pred cCccccc
Q 020081 198 KGELIGG 204 (331)
Q Consensus 198 ~G~~vgg 204 (331)
||+.++.
T Consensus 100 dGk~v~~ 106 (132)
T PRK11509 100 GGNYRGV 106 (132)
T ss_pred CCEEEEE
Confidence 9999864
No 355
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=95.96 E-value=0.01 Score=47.64 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=31.6
Q ss_pred CEEEEEecCCCCCCCcchHHHHHHhhcCCCCeEEEecCCCH
Q 020081 137 PVMLFMKGKPEEPKCGFSGKVVEILKQGKVDFGSFDILTDE 177 (331)
Q Consensus 137 ~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~~di~~~~ 177 (331)
.+++|.. |.|..|++++++|+++++.|+.+|+.+++
T Consensus 2 ~i~iY~~-----p~Cst~RKA~~~L~~~gi~~~~~d~~~~p 37 (126)
T TIGR01616 2 TIIFYEK-----PGCANNARQKAALKASGHDVEVQDILKEP 37 (126)
T ss_pred eEEEEeC-----CCCHHHHHHHHHHHHCCCCcEEEeccCCC
Confidence 4667766 68999999999999999999999998764
No 356
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=95.95 E-value=0.017 Score=43.27 Aligned_cols=38 Identities=26% Similarity=0.248 Sum_probs=26.5
Q ss_pred CCCCChhHHHHHHHHHhC--------CCCeEEEEecCC-HHHHHHHh
Q 020081 25 EEPKCGFSRQVVDILKDE--------KVEFGSFNILSD-NEVREGLK 62 (331)
Q Consensus 25 ~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~-~~~~~~~~ 62 (331)
|++||++|++..+.|.++ ++.+..|.++.+ .+..+.+.
T Consensus 9 wa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~ 55 (95)
T PF13905_consen 9 WASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLK 55 (95)
T ss_dssp E-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHH
Confidence 456999999988888773 466777888776 55555555
No 357
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=95.90 E-value=0.01 Score=46.95 Aligned_cols=41 Identities=20% Similarity=0.459 Sum_probs=32.9
Q ss_pred EEEEEecCCCCCCCcchHHHHHHhhcCCCCeEEEecCCCHHHHHHH
Q 020081 138 VMLFMKGKPEEPKCGFSGKVVEILKQGKVDFGSFDILTDEEVRQGL 183 (331)
Q Consensus 138 vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~~di~~~~~~~~~l 183 (331)
|.+|.. |.|..|++++.+|++++|.|..+|..+++--++.|
T Consensus 3 itiy~~-----p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL 43 (117)
T COG1393 3 ITIYGN-----PNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREEL 43 (117)
T ss_pred EEEEeC-----CCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHH
Confidence 566755 68999999999999999999999998764333333
No 358
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=95.89 E-value=0.037 Score=47.58 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=18.6
Q ss_pred CCCCChhHHHHHHHHHh----CCCCeEEEEe
Q 020081 25 EEPKCGFSRQVVDILKD----EKVEFGSFNI 51 (331)
Q Consensus 25 ~~~~C~~C~~~~~~l~~----~~i~~~~vdi 51 (331)
|++|||+|++..+.+.+ .++.+..+..
T Consensus 82 ~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~ 112 (189)
T TIGR02661 82 TAPSCPVCDKLFPIIKSIARAEETDVVMISD 112 (189)
T ss_pred ECCCChhHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 45699999987776644 4566665553
No 359
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=95.83 E-value=0.055 Score=38.81 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=42.9
Q ss_pred CChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechhhHHh
Q 020081 28 KCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIA 88 (331)
Q Consensus 28 ~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~~ 88 (331)
+||+|.+++-+|...|++|..++++. ..++...++|.+..+|+.+.....+..
T Consensus 16 ~sp~~~~v~~~L~~~gi~~~~~~~~~--------~~~~p~g~vPvl~~~g~~l~eS~~I~~ 68 (75)
T cd03080 16 LSPFCLKVETFLRMAGIPYENKFGGL--------AKRSPKGKLPFIELNGEKIADSELIID 68 (75)
T ss_pred CCHHHHHHHHHHHHCCCCcEEeecCc--------ccCCCCCCCCEEEECCEEEcCHHHHHH
Confidence 68999999999999999998887753 136678889999999988876665444
No 360
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=95.77 E-value=0.016 Score=57.24 Aligned_cols=90 Identities=11% Similarity=0.127 Sum_probs=59.4
Q ss_pred HHHHHhhCCC--EEEEEecCCCCCCChhHHHHHHHHHh--------CCCCeEEEEecCC-HHHHHHHhhhh--CCCcccE
Q 020081 6 RLQQLLDSHP--VMLFMKGTPEEPKCGFSRQVVDILKD--------EKVEFGSFNILSD-NEVREGLKKFS--NWPTFPQ 72 (331)
Q Consensus 6 ~~~~~i~~~~--vvvf~~~~~~~~~C~~C~~~~~~l~~--------~~i~~~~vdi~~~-~~~~~~~~~~~--~~~t~P~ 72 (331)
++++.+++++ .|+..+ +|.||--|+..++..-. .++.+...|+..+ ++.++.+++.. |.|++ .
T Consensus 464 ~L~~~la~~~~~pVmlDf---yAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~-~ 539 (569)
T COG4232 464 ELDQALAEAKAKPVMLDF---YADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPTY-L 539 (569)
T ss_pred HHHHHHHhCCCCcEEEee---ehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEE-E
Confidence 7888888876 554443 57799999998775442 3777889999765 78888888543 66776 4
Q ss_pred EEE-CCEEeechhhHHhhhcccchHHHHHhc
Q 020081 73 LYC-KGELLGGCDIVIAMHKSGELKDVFRDH 102 (331)
Q Consensus 73 ifi-~g~~vgg~~~~~~~~~~~~l~~~l~~~ 102 (331)
+|- +|+..-...+.+ ..+.+.+.+++.
T Consensus 540 ff~~~g~e~~~l~gf~---~a~~~~~~l~~~ 567 (569)
T COG4232 540 FFGPQGSEPEILTGFL---TADAFLEHLERA 567 (569)
T ss_pred EECCCCCcCcCCccee---cHHHHHHHHHHh
Confidence 444 454443333332 356677777654
No 361
>PRK10853 putative reductase; Provisional
Probab=95.76 E-value=0.011 Score=46.73 Aligned_cols=42 Identities=19% Similarity=0.225 Sum_probs=33.8
Q ss_pred EEEEEecCCCCCCCcchHHHHHHhhcCCCCeEEEecCCCH----HHHHHHH
Q 020081 138 VMLFMKGKPEEPKCGFSGKVVEILKQGKVDFGSFDILTDE----EVRQGLK 184 (331)
Q Consensus 138 vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~~di~~~~----~~~~~l~ 184 (331)
+.+|.. +.|..|++++++|++++++|+.+|+.+++ ++.+.+.
T Consensus 2 i~iy~~-----~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~ 47 (118)
T PRK10853 2 VTLYGI-----KNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFID 47 (118)
T ss_pred EEEEcC-----CCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHH
Confidence 456765 68999999999999999999999998763 4444443
No 362
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=95.74 E-value=0.012 Score=46.20 Aligned_cols=35 Identities=14% Similarity=0.448 Sum_probs=30.4
Q ss_pred EEEEEecCCCCCCCcchHHHHHHhhcCCCCeEEEecCCCH
Q 020081 138 VMLFMKGKPEEPKCGFSGKVVEILKQGKVDFGSFDILTDE 177 (331)
Q Consensus 138 vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~~di~~~~ 177 (331)
+.+|.. +.|..|++++++|++++++|..+|+.+++
T Consensus 1 i~iy~~-----~~C~t~rkA~~~L~~~~i~~~~~di~~~~ 35 (112)
T cd03034 1 ITIYHN-----PRCSKSRNALALLEEAGIEPEIVEYLKTP 35 (112)
T ss_pred CEEEEC-----CCCHHHHHHHHHHHHCCCCeEEEecccCC
Confidence 356766 68999999999999999999999998763
No 363
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=95.69 E-value=0.013 Score=46.17 Aligned_cols=35 Identities=17% Similarity=0.434 Sum_probs=30.4
Q ss_pred EEEEEecCCCCCCCcchHHHHHHhhcCCCCeEEEecCCCH
Q 020081 138 VMLFMKGKPEEPKCGFSGKVVEILKQGKVDFGSFDILTDE 177 (331)
Q Consensus 138 vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~~di~~~~ 177 (331)
|.+|.. |.|..|++++++|++++++|+.+|+.+++
T Consensus 1 i~iy~~-----~~C~t~rkA~~~L~~~~i~~~~~di~~~p 35 (114)
T TIGR00014 1 VTIYHN-----PRCSKSRNTLALLEDKGIEPEVVKYLKNP 35 (114)
T ss_pred CEEEEC-----CCCHHHHHHHHHHHHCCCCeEEEeccCCC
Confidence 356766 68999999999999999999999998763
No 364
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.016 Score=43.57 Aligned_cols=85 Identities=16% Similarity=0.335 Sum_probs=62.9
Q ss_pred CEEEEEecCCCCCCChh----HHHHHHHHHhCCCCeEEEEecCCHHHHHHH--------hhhhCCCcccEEEECCEEeec
Q 020081 15 PVMLFMKGTPEEPKCGF----SRQVVDILKDEKVEFGSFNILSDNEVREGL--------KKFSNWPTFPQLYCKGELLGG 82 (331)
Q Consensus 15 ~vvvf~~~~~~~~~C~~----C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~--------~~~~~~~t~P~ifi~g~~vgg 82 (331)
.+-||+.+++ .-+. -+++..+|+...|.|.++|+....+.+.++ +-..|.|.-||||-+.++.|+
T Consensus 3 ~irvyvasss---g~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gd 79 (108)
T KOG4023|consen 3 VIRVYVASSS---GSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGD 79 (108)
T ss_pred ceEEEEecCC---CchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCcccccc
Confidence 4567776532 2222 225667888888999999997665444443 334588989999999999999
Q ss_pred hhhHHhhhcccchHHHHHhc
Q 020081 83 CDIVIAMHKSGELKDVFRDH 102 (331)
Q Consensus 83 ~~~~~~~~~~~~l~~~l~~~ 102 (331)
|+...+..+.+.|.+.|+-.
T Consensus 80 ye~F~ea~E~ntl~eFL~la 99 (108)
T KOG4023|consen 80 YELFFEAVEQNTLQEFLGLA 99 (108)
T ss_pred HHHHHHHHHHHHHHHHHccC
Confidence 99998988899999998655
No 365
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=95.67 E-value=0.022 Score=56.36 Aligned_cols=88 Identities=11% Similarity=0.052 Sum_probs=60.4
Q ss_pred HHHHHhcCCC--EEEEEecCCCCCCCcchHHHHHHhh--------cCCCCeEEEecCC-CHHHHHHHHhhcCCCCccee-
Q 020081 128 RLESLINSSP--VMLFMKGKPEEPKCGFSGKVVEILK--------QGKVDFGSFDILT-DEEVRQGLKVYSNWSSYPQL- 195 (331)
Q Consensus 128 ~~~~~~~~~~--vvvf~~~~~~~~~C~~C~~~~~~l~--------~~~i~~~~~di~~-~~~~~~~l~~~~~~~~vP~i- 195 (331)
.++++..+++ .|+..++ ++||-.|+..++..- -.++.+-..|+++ |++.++.|+++ |+-++|++
T Consensus 464 ~L~~~la~~~~~pVmlDfy---AdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~-~~~G~P~~~ 539 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFY---ADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRL-GVFGVPTYL 539 (569)
T ss_pred HHHHHHHhCCCCcEEEeee---hhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHc-CCCCCCEEE
Confidence 6777777666 8887775 589999998876553 2466677889886 48889899888 99999999
Q ss_pred eec--CccccchhhHHHHhhcchhHHHHh
Q 020081 196 YIK--GELIGGSDIVLEMQKSGELKKVLA 222 (331)
Q Consensus 196 fi~--G~~vgg~d~~~~~~~~g~L~~~l~ 222 (331)
|.+ |+..-. +......+.+.++++
T Consensus 540 ff~~~g~e~~~---l~gf~~a~~~~~~l~ 565 (569)
T COG4232 540 FFGPQGSEPEI---LTGFLTADAFLEHLE 565 (569)
T ss_pred EECCCCCcCcC---CcceecHHHHHHHHH
Confidence 554 333321 333334455555554
No 366
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=95.67 E-value=0.058 Score=39.23 Aligned_cols=59 Identities=7% Similarity=0.018 Sum_probs=43.3
Q ss_pred ChhHHHHHHHHHhCCCCeEEEEecC--CHHHHHHHhhhhCCCcccEEEEC---CEEeechhhHH
Q 020081 29 CGFSRQVVDILKDEKVEFGSFNILS--DNEVREGLKKFSNWPTFPQLYCK---GELLGGCDIVI 87 (331)
Q Consensus 29 C~~C~~~~~~l~~~~i~~~~vdi~~--~~~~~~~~~~~~~~~t~P~ifi~---g~~vgg~~~~~ 87 (331)
+|+|++++-+|..+|++|..+.++. .......+.+++...++|.+..+ |..+.....+.
T Consensus 9 ~~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~ 72 (81)
T cd03048 9 TPNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAIL 72 (81)
T ss_pred CCChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHH
Confidence 4999999999999999998776652 22334456568888899999887 66665444433
No 367
>PRK10387 glutaredoxin 2; Provisional
Probab=95.66 E-value=0.04 Score=47.72 Aligned_cols=63 Identities=14% Similarity=0.227 Sum_probs=45.4
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEE-EECCEEeechhhH
Q 020081 17 MLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQL-YCKGELLGGCDIV 86 (331)
Q Consensus 17 vvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~i-fi~g~~vgg~~~~ 86 (331)
.+|+.. .||+|.+++-+|..+|++|..++++.... ..... .++..++|++ ..+|..+.....+
T Consensus 2 ~Ly~~~-----~sp~~~kv~~~L~~~gi~y~~~~~~~~~~-~~~~~-~~p~~~VPvL~~~~g~~l~eS~aI 65 (210)
T PRK10387 2 KLYIYD-----HCPFCVKARMIFGLKNIPVELIVLANDDE-ATPIR-MIGQKQVPILQKDDGSYMPESLDI 65 (210)
T ss_pred EEEeCC-----CCchHHHHHHHHHHcCCCeEEEEcCCCch-hhHHH-hcCCcccceEEecCCeEecCHHHH
Confidence 466654 79999999999999999999988854332 22233 6677799998 4577776655443
No 368
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=95.66 E-value=0.067 Score=42.97 Aligned_cols=77 Identities=13% Similarity=0.259 Sum_probs=57.5
Q ss_pred cCCEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeH---HHHHHH
Q 020081 243 SSPVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGC---DIVMEL 319 (331)
Q Consensus 243 ~~~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~---~~~~~~ 319 (331)
..++++|- .|+|+.|..=.+.|+++|++...+..+.-..+++.|--.....+-=+.+|||.+|-|+ +++..+
T Consensus 25 ~~~~~vyk-----sPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~l 99 (149)
T COG3019 25 ATEMVVYK-----SPNCGCCDEWAQHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARL 99 (149)
T ss_pred eeeEEEEe-----CCCCccHHHHHHHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHH
Confidence 44677887 5899999999999999999888777755455444433333455778899999999996 677777
Q ss_pred HHcCC
Q 020081 320 KDNGE 324 (331)
Q Consensus 320 ~~~g~ 324 (331)
.+.+.
T Consensus 100 l~~~p 104 (149)
T COG3019 100 LAEKP 104 (149)
T ss_pred HhCCC
Confidence 76654
No 369
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=95.64 E-value=0.041 Score=44.81 Aligned_cols=56 Identities=29% Similarity=0.310 Sum_probs=37.6
Q ss_pred CCCEEEEEecCCCCC-CChhHHHHHHHHHh-------CCCCeEEEEecCCHHHHHHHhhhhCCCcccEEE
Q 020081 13 SHPVMLFMKGTPEEP-KCGFSRQVVDILKD-------EKVEFGSFNILSDNEVREGLKKFSNWPTFPQLY 74 (331)
Q Consensus 13 ~~~vvvf~~~~~~~~-~C~~C~~~~~~l~~-------~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~if 74 (331)
..+++|+. |+. |||+|+...+.|.+ .++.+..+..+.++.+++.+.+ ...++|.+.
T Consensus 28 gk~~vv~f----~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~--~~~~~~~~~ 91 (146)
T PF08534_consen 28 GKPVVVNF----WASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKK--YGINFPVLS 91 (146)
T ss_dssp TSEEEEEE----ESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHH--TTTTSEEEE
T ss_pred CCeEEEEE----EccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHh--hCCCceEEe
Confidence 33445544 556 99999977765555 3688999999888777777764 333465533
No 370
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=95.63 E-value=0.031 Score=44.27 Aligned_cols=70 Identities=14% Similarity=0.218 Sum_probs=34.6
Q ss_pred HHHHHHHHhc-CCCEEEEEecCC---CCCCCcchHHHHHHhhc------CCCCeEEEecCC-----C--HHHHHHHHh-h
Q 020081 125 LTSRLESLIN-SSPVMLFMKGKP---EEPKCGFSGKVVEILKQ------GKVDFGSFDILT-----D--EEVRQGLKV-Y 186 (331)
Q Consensus 125 ~~~~~~~~~~-~~~vvvf~~~~~---~~~~C~~C~~~~~~l~~------~~i~~~~~di~~-----~--~~~~~~l~~-~ 186 (331)
..+.++++.+ +.++.|+..++. -..|||+|..+.+.+++ .+..+..+.+-. + ..++ +. .
T Consensus 8 ~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR---~~p~ 84 (119)
T PF06110_consen 8 FEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFR---TDPD 84 (119)
T ss_dssp HHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHH---H--C
T ss_pred HHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCce---Ecce
Confidence 3344444333 355555544442 34699999999877764 245566676642 2 2333 21 2
Q ss_pred cCCCCcceeee
Q 020081 187 SNWSSYPQLYI 197 (331)
Q Consensus 187 ~~~~~vP~ifi 197 (331)
.+++++||++.
T Consensus 85 ~~l~~IPTLi~ 95 (119)
T PF06110_consen 85 LKLKGIPTLIR 95 (119)
T ss_dssp C---SSSEEEE
T ss_pred eeeeecceEEE
Confidence 48999999954
No 371
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=95.54 E-value=0.045 Score=49.28 Aligned_cols=64 Identities=16% Similarity=0.295 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhh----cCCCCeEEEecCCC-----------HHHHHHHHhhcCC
Q 020081 125 LTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILK----QGKVDFGSFDILTD-----------EEVRQGLKVYSNW 189 (331)
Q Consensus 125 ~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~----~~~i~~~~~di~~~-----------~~~~~~l~~~~~~ 189 (331)
-.+.++++-++..+++|+.+ .|+||.+..++|+ ++|+....|+++.. ...+ +++ |+
T Consensus 141 ~~~~i~~la~~~gL~fFy~~-----~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa---~~l-~v 211 (256)
T TIGR02739 141 KEKAIQQLSQSYGLFFFYRG-----KSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQA---QHL-GV 211 (256)
T ss_pred HHHHHHHHHhceeEEEEECC-----CCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHH---Hhc-CC
Confidence 34456677778899988885 7999999888885 47888888877643 2233 344 99
Q ss_pred CCcceeee
Q 020081 190 SSYPQLYI 197 (331)
Q Consensus 190 ~~vP~ifi 197 (331)
..+|++|+
T Consensus 212 ~~~Pal~L 219 (256)
T TIGR02739 212 KYFPALYL 219 (256)
T ss_pred ccCceEEE
Confidence 99999955
No 372
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=95.52 E-value=0.026 Score=41.78 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=37.5
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHhhc------CCccEEEEecCCH-----------------------HHH-----HHH
Q 020081 246 VMLFMKGNPDSPRCGFSSKVVNALKEE------GVNFGSFDILTDE-----------------------EVR-----QGL 291 (331)
Q Consensus 246 v~vy~k~~p~~~~Cp~C~~a~~~l~~~------~v~~~~~dv~~~~-----------------------~~~-----~~l 291 (331)
|.+|. .+.||+|..+.+.|.+. ++.+..+.+.... +.. ..+
T Consensus 1 i~~f~-----d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (98)
T cd02972 1 IVEFF-----DPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTAL 75 (98)
T ss_pred CeEEE-----CCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 45677 68999999999998764 4556666542211 111 122
Q ss_pred HhhcCCCCcCEEEECC
Q 020081 292 KVYSNWPTFPQLYHKG 307 (331)
Q Consensus 292 ~~~~g~~~vP~ifi~g 307 (331)
....|..++|+++++|
T Consensus 76 ~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 76 ARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHcCCCCCCEEEECC
Confidence 3345889999999999
No 373
>PRK15113 glutathione S-transferase; Provisional
Probab=95.51 E-value=0.074 Score=46.44 Aligned_cols=72 Identities=18% Similarity=0.220 Sum_probs=53.3
Q ss_pred CEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecC--CHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHH
Q 020081 245 PVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILT--DEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMEL 319 (331)
Q Consensus 245 ~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~--~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~ 319 (331)
.+++|... .+.||+|.+++-+|.+.|++|+.+.++. ......++.+..-...||++.+||..+---..+..+
T Consensus 5 ~~~Ly~~~---~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~Y 78 (214)
T PRK15113 5 AITLYSDA---HFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEY 78 (214)
T ss_pred eEEEEeCC---CCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHH
Confidence 46788831 1369999999999999999999988864 223345677777778999999998777654444443
No 374
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=95.51 E-value=0.05 Score=46.96 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=16.3
Q ss_pred cCCCCcceeee-cCccccchhh
Q 020081 187 SNWSSYPQLYI-KGELIGGSDI 207 (331)
Q Consensus 187 ~~~~~vP~ifi-~G~~vgg~d~ 207 (331)
+|+.+.|++++ ||+.+.|+..
T Consensus 168 ~gi~gtPtii~~~G~~~~G~~~ 189 (197)
T cd03020 168 LGVNGTPTIVLADGRVVPGAPP 189 (197)
T ss_pred cCCCcccEEEECCCeEecCCCC
Confidence 49999999977 5888877553
No 375
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=95.50 E-value=0.048 Score=43.35 Aligned_cols=30 Identities=20% Similarity=0.097 Sum_probs=18.6
Q ss_pred HHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc
Q 020081 129 LESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ 163 (331)
Q Consensus 129 ~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~ 163 (331)
++++ +. +++|+.+ |+.||++|....+.|++
T Consensus 18 l~~~-~g-k~vvl~F---~a~~C~~C~~~~p~l~~ 47 (126)
T cd03012 18 LAQL-RG-KVVLLDF---WTYCCINCLHTLPYLTD 47 (126)
T ss_pred HHHh-CC-CEEEEEE---ECCCCccHHHHHHHHHH
Confidence 4444 33 4455544 45799999877666654
No 376
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=95.45 E-value=0.032 Score=42.45 Aligned_cols=29 Identities=14% Similarity=0.136 Sum_probs=20.4
Q ss_pred CCCCcchHHHHHHhhc-------CCCCeEEEecCCC
Q 020081 148 EPKCGFSGKVVEILKQ-------GKVDFGSFDILTD 176 (331)
Q Consensus 148 ~~~C~~C~~~~~~l~~-------~~i~~~~~di~~~ 176 (331)
++||++|+...+.|.+ .++.+..++++.+
T Consensus 28 ~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~ 63 (116)
T cd02966 28 ASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDD 63 (116)
T ss_pred cccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCC
Confidence 3699999876655543 3566778888764
No 377
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.41 E-value=0.067 Score=41.87 Aligned_cols=73 Identities=14% Similarity=0.202 Sum_probs=44.3
Q ss_pred hhHHHHHHHHhcCCCEEEEEecC----CCCCCCcchHHHHHHhhc------CCCCeEEEecCCC-------HHHHHHHHh
Q 020081 123 ATLTSRLESLINSSPVMLFMKGK----PEEPKCGFSGKVVEILKQ------GKVDFGSFDILTD-------EEVRQGLKV 185 (331)
Q Consensus 123 ~~~~~~~~~~~~~~~vvvf~~~~----~~~~~C~~C~~~~~~l~~------~~i~~~~~di~~~-------~~~~~~l~~ 185 (331)
+...+.++++-+..++.++..++ .-.+|||+|.++.+.+.+ .++.|..+++-+- ..+| +.
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR---~d 89 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFR---KD 89 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccc---cC
Confidence 34455556665666666554332 245699999999888765 3556777776532 2334 22
Q ss_pred hcCC-CCcceeeecC
Q 020081 186 YSNW-SSYPQLYIKG 199 (331)
Q Consensus 186 ~~~~-~~vP~ifi~G 199 (331)
. ++ ..+||+..=|
T Consensus 90 ~-~~lt~vPTLlrw~ 103 (128)
T KOG3425|consen 90 P-GILTAVPTLLRWK 103 (128)
T ss_pred C-CceeecceeeEEc
Confidence 2 55 7799995533
No 378
>PLN02378 glutathione S-transferase DHAR1
Probab=95.41 E-value=0.051 Score=47.51 Aligned_cols=64 Identities=17% Similarity=0.262 Sum_probs=49.0
Q ss_pred CCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHHH
Q 020081 257 PRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKD 321 (331)
Q Consensus 257 ~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~~ 321 (331)
+.||+|.++.-+|+..|++|+.+.|+.... .+++.+..-...||++..||..+.-...+..+.+
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~ 81 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDK-PQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILE 81 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccC-CHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHH
Confidence 479999999999999999999887754221 2346677778899999999887776665555543
No 379
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.41 E-value=0.11 Score=40.14 Aligned_cols=74 Identities=16% Similarity=0.342 Sum_probs=50.2
Q ss_pred HHHHHHHHhhC---CCEEEEEecCCCCCCChhHHHHHHHHHhC------CCCeEEEEecCCHHHHHHHhhhhC----CCc
Q 020081 3 LKSRLQQLLDS---HPVMLFMKGTPEEPKCGFSRQVVDILKDE------KVEFGSFNILSDNEVREGLKKFSN----WPT 69 (331)
Q Consensus 3 ~~~~~~~~i~~---~~vvvf~~~~~~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~----~~t 69 (331)
..+.+++++.. .+++||--+| .||=+.++..-|++. .+++..+|+-++..+.+...+..| .|.
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt----~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ 81 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHST----RCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ 81 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-T----T-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCC----CChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence 34677787765 4577876664 899999998888773 389999999888665555554443 566
Q ss_pred ccEEEECCEEee
Q 020081 70 FPQLYCKGELLG 81 (331)
Q Consensus 70 ~P~ifi~g~~vg 81 (331)
+ .++.||+.+-
T Consensus 82 ~-ili~~g~~v~ 92 (105)
T PF11009_consen 82 V-ILIKNGKVVW 92 (105)
T ss_dssp E-EEEETTEEEE
T ss_pred E-EEEECCEEEE
Confidence 6 6777999884
No 380
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=95.39 E-value=0.088 Score=37.71 Aligned_cols=59 Identities=20% Similarity=0.170 Sum_probs=43.5
Q ss_pred CChhHHHHHHHHHhCCCCeEEEEecCC--HHHHHHHhhhhCCCcccEEEECCEEeechhhH
Q 020081 28 KCGFSRQVVDILKDEKVEFGSFNILSD--NEVREGLKKFSNWPTFPQLYCKGELLGGCDIV 86 (331)
Q Consensus 28 ~C~~C~~~~~~l~~~~i~~~~vdi~~~--~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~ 86 (331)
.+++|+++.-+|..+|++|..+.++.. ......+.+++...++|.+..+|..+.....+
T Consensus 8 ~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI 68 (76)
T cd03050 8 MSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAI 68 (76)
T ss_pred CChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHH
Confidence 799999999999999999988777532 22223455578888999998888766544433
No 381
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=95.36 E-value=0.021 Score=42.83 Aligned_cols=47 Identities=26% Similarity=0.201 Sum_probs=29.1
Q ss_pred CEEEEEecCCCCCCCcchHHHHHHhhc--------CCCCeEEEecCCC-HHHHHHHHhh
Q 020081 137 PVMLFMKGKPEEPKCGFSGKVVEILKQ--------GKVDFGSFDILTD-EEVRQGLKVY 186 (331)
Q Consensus 137 ~vvvf~~~~~~~~~C~~C~~~~~~l~~--------~~i~~~~~di~~~-~~~~~~l~~~ 186 (331)
+++++.+ |++||++|+...+.|++ .++.+..+.++++ ++..+.+++.
T Consensus 2 K~~ll~f---wa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~ 57 (95)
T PF13905_consen 2 KPVLLYF---WASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKN 57 (95)
T ss_dssp SEEEEEE---E-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTC
T ss_pred CEEEEEE---ECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhc
Confidence 4566666 56799999887777754 3556667777665 4555555433
No 382
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=95.35 E-value=0.065 Score=45.27 Aligned_cols=38 Identities=11% Similarity=0.011 Sum_probs=25.5
Q ss_pred CCCEEEEEecCCCCCCCcchHHHHHHhhc---CCCCeEEEecCC
Q 020081 135 SSPVMLFMKGKPEEPKCGFSGKVVEILKQ---GKVDFGSFDILT 175 (331)
Q Consensus 135 ~~~vvvf~~~~~~~~~C~~C~~~~~~l~~---~~i~~~~~di~~ 175 (331)
..+++++.+ |++||++|++..+.|++ .++.+..++.+.
T Consensus 62 ~gk~vll~F---~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~ 102 (173)
T TIGR00385 62 QGKPVLLNV---WASWCPPCRAEHPYLNELAKDGLPIVGVDYKD 102 (173)
T ss_pred CCCEEEEEE---ECCcCHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 345555555 45799999988777754 466666676643
No 383
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=95.30 E-value=0.035 Score=46.39 Aligned_cols=94 Identities=10% Similarity=0.162 Sum_probs=46.3
Q ss_pred HHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHH-HHHhC------CCCeEE--EEecCCHHHHHHHh-------hhhCC
Q 020081 4 KSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVD-ILKDE------KVEFGS--FNILSDNEVREGLK-------KFSNW 67 (331)
Q Consensus 4 ~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~-~l~~~------~i~~~~--vdi~~~~~~~~~~~-------~~~~~ 67 (331)
++.++..-++++.++++-++ .||.+|+.|.. .+++. +-.|+- +|.++.|++...+. ...|+
T Consensus 27 ~ea~~~Ak~e~KpIfl~ig~---~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGw 103 (163)
T PF03190_consen 27 EEALEKAKKENKPIFLSIGY---SWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGW 103 (163)
T ss_dssp HHHHHHHHHHT--EEEEEE----TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---S
T ss_pred HHHHHHHHhcCCcEEEEEEe---cCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCC
Confidence 35667777777755554443 49999998764 44443 223544 56666688777764 24578
Q ss_pred CcccEEEE--CCEEeechhhHHh--hhcccchHHHHHhc
Q 020081 68 PTFPQLYC--KGELLGGCDIVIA--MHKSGELKDVFRDH 102 (331)
Q Consensus 68 ~t~P~ifi--~g~~vgg~~~~~~--~~~~~~l~~~l~~~ 102 (331)
|+. +|. +|+.+.|..=+.. ......|.++|.+.
T Consensus 104 Pl~--vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i 140 (163)
T PF03190_consen 104 PLT--VFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERI 140 (163)
T ss_dssp SEE--EEE-TTS-EEEEESS--SS-BTTB--HHHHHHHH
T ss_pred Cce--EEECCCCCeeeeeeecCCCCCCCCccHHHHHHHH
Confidence 876 454 7888754432211 11123456666555
No 384
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=95.29 E-value=0.083 Score=42.82 Aligned_cols=62 Identities=23% Similarity=0.225 Sum_probs=36.4
Q ss_pred HHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHh-------CCCCeEEEEecCCHHHHHHHhhhhCCCcccEEE
Q 020081 8 QQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKD-------EKVEFGSFNILSDNEVREGLKKFSNWPTFPQLY 74 (331)
Q Consensus 8 ~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~if 74 (331)
.+.....+++|+.. |+.|||+|++-.+.|.+ .++.+..|..+.......... ..+ .++|.+.
T Consensus 18 ~~~~~~~~~vl~f~---~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~-~~~-~~~p~~~ 86 (149)
T cd02970 18 SALLGEGPVVVVFY---RGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDK-GKF-LPFPVYA 86 (149)
T ss_pred HHHhcCCCEEEEEE---CCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHH-hcC-CCCeEEE
Confidence 34444445555543 34599999986655555 467787787765555443333 334 3577544
No 385
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=95.23 E-value=0.048 Score=46.47 Aligned_cols=55 Identities=15% Similarity=0.288 Sum_probs=36.6
Q ss_pred EEEEecCCCCCCCCcchHHH----HHHHhhcCCccEEEEecCC-----HH----HHHHHHhhcCC--CCcCEEEE
Q 020081 246 VMLFMKGNPDSPRCGFSSKV----VNALKEEGVNFGSFDILTD-----EE----VRQGLKVYSNW--PTFPQLYH 305 (331)
Q Consensus 246 v~vy~k~~p~~~~Cp~C~~a----~~~l~~~~v~~~~~dv~~~-----~~----~~~~l~~~~g~--~~vP~ifi 305 (331)
+++|.. .|||+|++. +++.+++|+.+--++++.+ +. -...+.+.+|. ..+|+.|+
T Consensus 73 lV~Fwa-----swCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfL 142 (181)
T PRK13728 73 VVLFMQ-----GHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFL 142 (181)
T ss_pred EEEEEC-----CCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEE
Confidence 888985 499999998 5555677877766666533 11 12334445563 69999985
No 386
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=95.21 E-value=0.068 Score=47.87 Aligned_cols=67 Identities=10% Similarity=0.241 Sum_probs=46.7
Q ss_pred HHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc----CCCCeEEEecCC--CHHH------HHHHHhhcCCCCc
Q 020081 125 LTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ----GKVDFGSFDILT--DEEV------RQGLKVYSNWSSY 192 (331)
Q Consensus 125 ~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~----~~i~~~~~di~~--~~~~------~~~l~~~~~~~~v 192 (331)
-.+.++++-++..+++|+.+ .||||.+..++|+. +|+....|.++. .+.+ ......+ |+..+
T Consensus 134 ~~~~i~~la~~~GL~fFy~s-----~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l-~v~~~ 207 (248)
T PRK13703 134 QRQAIAKLAEHYGLMFFYRG-----QDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRL-GVKYF 207 (248)
T ss_pred HHHHHHHHHhcceEEEEECC-----CCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhc-CCccc
Confidence 33456777788999999885 79999998888864 788877776653 1111 1112344 99999
Q ss_pred ceeee
Q 020081 193 PQLYI 197 (331)
Q Consensus 193 P~ifi 197 (331)
|.+|+
T Consensus 208 PAl~L 212 (248)
T PRK13703 208 PALML 212 (248)
T ss_pred ceEEE
Confidence 99965
No 387
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=95.17 E-value=0.11 Score=37.06 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=45.8
Q ss_pred CCChhHHHHHHHHHhCCCCeEEEEecCCH-HHHHHHhhhhCCCcccEEEECCEEeechhhH
Q 020081 27 PKCGFSRQVVDILKDEKVEFGSFNILSDN-EVREGLKKFSNWPTFPQLYCKGELLGGCDIV 86 (331)
Q Consensus 27 ~~C~~C~~~~~~l~~~~i~~~~vdi~~~~-~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~ 86 (331)
..|++|++++-+|..+|++|..+.++-.. .....+.+++....+|.+..+|..+.....+
T Consensus 8 ~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI 68 (73)
T cd03043 8 NYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAI 68 (73)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHH
Confidence 47999999999999999999888775331 2234565688889999999898877655443
No 388
>PLN02473 glutathione S-transferase
Probab=95.11 E-value=0.1 Score=45.44 Aligned_cols=70 Identities=11% Similarity=0.170 Sum_probs=53.6
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCC--HHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHH
Q 020081 246 VMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTD--EEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELK 320 (331)
Q Consensus 246 v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~--~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~ 320 (331)
+.+|. .+.||+|.+++-+|..+|++|+.+.++.. .....+..+..-...||++..||..|.....+.++.
T Consensus 3 ~kLy~-----~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL 74 (214)
T PLN02473 3 VKVYG-----QIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYY 74 (214)
T ss_pred eEEec-----CCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHH
Confidence 46787 46899999999999999999998876532 233344555677789999999998888777776654
No 389
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=95.10 E-value=0.081 Score=47.64 Aligned_cols=46 Identities=17% Similarity=0.324 Sum_probs=37.6
Q ss_pred HHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHh----CCCCeEEEEecCC
Q 020081 4 KSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKD----EKVEFGSFNILSD 54 (331)
Q Consensus 4 ~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~----~~i~~~~vdi~~~ 54 (331)
++.++++..+..+++|..+ .||+|+.+.++|+. +|+....|++|..
T Consensus 142 ~~~i~~la~~~gL~fFy~~-----~C~~C~~~apil~~fa~~ygi~v~~VS~DG~ 191 (256)
T TIGR02739 142 EKAIQQLSQSYGLFFFYRG-----KSPISQKMAPVIQAFAKEYGISVIPISVDGT 191 (256)
T ss_pred HHHHHHHHhceeEEEEECC-----CCchhHHHHHHHHHHHHHhCCeEEEEecCCC
Confidence 4567778888888888887 79999999888865 6899888888754
No 390
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=95.02 E-value=0.086 Score=37.75 Aligned_cols=59 Identities=10% Similarity=0.010 Sum_probs=43.5
Q ss_pred CChhHHHHHHHHHhCCCCeEEEEecCCH-HHHHHHhhhhCCCcccEEEEC-CEEeechhhH
Q 020081 28 KCGFSRQVVDILKDEKVEFGSFNILSDN-EVREGLKKFSNWPTFPQLYCK-GELLGGCDIV 86 (331)
Q Consensus 28 ~C~~C~~~~~~l~~~~i~~~~vdi~~~~-~~~~~~~~~~~~~t~P~ifi~-g~~vgg~~~~ 86 (331)
.|++|.+++-+|..+|++|..++++... .....+.+++...++|.+..+ |..+.....+
T Consensus 8 ~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI 68 (75)
T cd03044 8 GNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAI 68 (75)
T ss_pred CCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHH
Confidence 7999999999999999999888776431 223445557888999999874 7666544433
No 391
>PTZ00056 glutathione peroxidase; Provisional
Probab=94.98 E-value=0.058 Score=46.82 Aligned_cols=56 Identities=16% Similarity=0.327 Sum_probs=34.1
Q ss_pred CCEEEEEecCCCCCCChhHHHHHHHHHh-------CCCCeEEEEec-------CC-HHHHHHHhhhhCCCcccEEE
Q 020081 14 HPVMLFMKGTPEEPKCGFSRQVVDILKD-------EKVEFGSFNIL-------SD-NEVREGLKKFSNWPTFPQLY 74 (331)
Q Consensus 14 ~~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~-------~~-~~~~~~~~~~~~~~t~P~if 74 (331)
.++||..+ |+.|||+|++-.+.|.+ .|+.+.-++++ ++ .++++.+. -.+ -++|.+.
T Consensus 39 Gkvvlv~f---wAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~-~~~-~~fpvl~ 109 (199)
T PTZ00056 39 NKVLMITN---SASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFND-KNK-IKYNFFE 109 (199)
T ss_pred CCEEEEEE---ECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHH-HcC-CCceeee
Confidence 35555544 78899999975555554 36777777653 22 45666665 344 3677543
No 392
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=94.95 E-value=0.15 Score=36.16 Aligned_cols=57 Identities=9% Similarity=-0.015 Sum_probs=43.6
Q ss_pred CChhHHHHHHHHHhCCCCeEEEEecCC--HHHHHHHhhhhCCCcccEEEECCEEeechh
Q 020081 28 KCGFSRQVVDILKDEKVEFGSFNILSD--NEVREGLKKFSNWPTFPQLYCKGELLGGCD 84 (331)
Q Consensus 28 ~C~~C~~~~~~l~~~~i~~~~vdi~~~--~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~ 84 (331)
.+++|.+++-+|.++|++|..++++.. ......+.+++...++|.+..+|..+....
T Consensus 8 ~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~ 66 (73)
T cd03047 8 SSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESN 66 (73)
T ss_pred CCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHH
Confidence 789999999999999999988877532 223345556888899999988887665443
No 393
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.89 E-value=0.081 Score=43.00 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=21.6
Q ss_pred cCCCCcCEEEECCeEEeeHHHHHHHH
Q 020081 295 SNWPTFPQLYHKGELIGGCDIVMELK 320 (331)
Q Consensus 295 ~g~~~vP~ifi~g~~igg~~~~~~~~ 320 (331)
.|..++|+++|||+.+-|+.+...+.
T Consensus 125 ~gi~gtPt~~v~g~~~~G~~~~~~l~ 150 (154)
T cd03023 125 LGITGTPAFIIGDTVIPGAVPADTLK 150 (154)
T ss_pred cCCCcCCeEEECCEEecCCCCHHHHH
Confidence 37778999999999999988766654
No 394
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=94.75 E-value=0.22 Score=41.73 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=15.3
Q ss_pred hhhhHHHHHHHHhhcCCEEEEe
Q 020081 229 EKENLEDRLKNLITSSPVMLFM 250 (331)
Q Consensus 229 ~~~~~~~~~~~~~~~~~v~vy~ 250 (331)
....+.+.|+.++.+..+-..-
T Consensus 140 ~~~~~~~~i~~~l~~~~~~~~~ 161 (171)
T cd02969 140 TGRDLRAALDALLAGKPVPVPQ 161 (171)
T ss_pred cHHHHHHHHHHHHcCCCCCccc
Confidence 3466778888888777766554
No 395
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=94.72 E-value=0.12 Score=46.23 Aligned_cols=45 Identities=13% Similarity=0.304 Sum_probs=36.9
Q ss_pred HHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHh----CCCCeEEEEecC
Q 020081 4 KSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKD----EKVEFGSFNILS 53 (331)
Q Consensus 4 ~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~----~~i~~~~vdi~~ 53 (331)
.+.++++.+++.++.|..+ .||+|+...++|+. +|+...-|.+|.
T Consensus 135 ~~~i~~la~~~GL~fFy~s-----~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG 183 (248)
T PRK13703 135 RQAIAKLAEHYGLMFFYRG-----QDPIDGQLAQVINDFRDTYGLSVIPVSVDG 183 (248)
T ss_pred HHHHHHHHhcceEEEEECC-----CCchhHHHHHHHHHHHHHhCCeEEEEecCC
Confidence 4467788888888888887 79999999888887 588888888764
No 396
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.71 E-value=0.15 Score=41.39 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=15.3
Q ss_pred CCCCcceeeecCccccchhhH
Q 020081 188 NWSSYPQLYIKGELIGGSDIV 208 (331)
Q Consensus 188 ~~~~vP~ifi~G~~vgg~d~~ 208 (331)
|+.++|++++||+.+.|.+..
T Consensus 126 gi~gtPt~~v~g~~~~G~~~~ 146 (154)
T cd03023 126 GITGTPAFIIGDTVIPGAVPA 146 (154)
T ss_pred CCCcCCeEEECCEEecCCCCH
Confidence 777888888888777665543
No 397
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=94.69 E-value=0.13 Score=44.82 Aligned_cols=61 Identities=21% Similarity=0.230 Sum_probs=46.6
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeec
Q 020081 16 VMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGG 82 (331)
Q Consensus 16 vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg 82 (331)
+.+|... +|++|.+++-+|.++|++|..+.++-.. ....+.+++-..++|.+..+|..+..
T Consensus 11 ~~Ly~~~-----~s~~~~rv~~~L~e~gl~~e~~~v~~~~-~~~~~~~~nP~g~VPvL~~~g~~l~E 71 (211)
T PRK09481 11 MTLFSGP-----TDIYSHQVRIVLAEKGVSVEIEQVEKDN-LPQDLIDLNPYQSVPTLVDRELTLYE 71 (211)
T ss_pred eEEeCCC-----CChhHHHHHHHHHHCCCCCEEEeCCccc-CCHHHHHhCCCCCCCEEEECCEEeeC
Confidence 5667653 7999999999999999999888876432 22345558888899999888866543
No 398
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=94.67 E-value=0.012 Score=46.33 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=12.4
Q ss_pred CCCCcchHHHHHHhhc
Q 020081 148 EPKCGFSGKVVEILKQ 163 (331)
Q Consensus 148 ~~~C~~C~~~~~~l~~ 163 (331)
++||++|+...+.|+.
T Consensus 29 ~~~C~~C~~~~~~l~~ 44 (123)
T cd03011 29 ATWCPVCRFTSPTVNQ 44 (123)
T ss_pred CCcChhhhhhChHHHH
Confidence 4799999988766654
No 399
>smart00594 UAS UAS domain.
Probab=94.67 E-value=0.14 Score=40.59 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=36.1
Q ss_pred HHHHHHHHhhCCC-EEEEEecCCCCCCChhHHHHHH-HHHhCC------CCeE--EEEecCC--HHHHHHHhhhhCCCcc
Q 020081 3 LKSRLQQLLDSHP-VMLFMKGTPEEPKCGFSRQVVD-ILKDEK------VEFG--SFNILSD--NEVREGLKKFSNWPTF 70 (331)
Q Consensus 3 ~~~~~~~~i~~~~-vvvf~~~~~~~~~C~~C~~~~~-~l~~~~------i~~~--~vdi~~~--~~~~~~~~~~~~~~t~ 70 (331)
..+.+++..++.+ ++||.- ++||++|+.+.+ +|.... =.|. .+|+... ..+...++ +++.|++
T Consensus 16 ~~~a~~~Ak~~~K~~lv~~~----~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~-~~~~P~~ 90 (122)
T smart00594 16 LEAAKQEASRQRRLLWLYLH----SQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYK-LDSFPYV 90 (122)
T ss_pred HHHHHHHHHhhcCCEEEEEe----CCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcC-cCCCCEE
Confidence 3456666666655 555553 359999998644 444421 1344 4566543 44555555 5676766
No 400
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=94.59 E-value=0.33 Score=35.19 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=44.3
Q ss_pred CCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHh--hcCCCCcCEEEECCeEEeeHHHHHHHH
Q 020081 257 PRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKV--YSNWPTFPQLYHKGELIGGCDIVMELK 320 (331)
Q Consensus 257 ~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~--~~g~~~vP~ifi~g~~igg~~~~~~~~ 320 (331)
+.++.|.+++-+|+..|++|+.+.++..++.. .+.. ......+|++.+||..+....-+..+.
T Consensus 8 ~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~-~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL 72 (79)
T cd03077 8 NGRGRMESIRWLLAAAGVEFEEKFIESAEDLE-KLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYI 72 (79)
T ss_pred CCCChHHHHHHHHHHcCCCcEEEEeccHHHHH-hhccccCCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence 46778899999999999999998886433221 1221 123568999999998887666555544
No 401
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.12 Score=42.57 Aligned_cols=72 Identities=15% Similarity=0.184 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc---------CCCCeEEEecCC---------C---HHHHHHH
Q 020081 125 LTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ---------GKVDFGSFDILT---------D---EEVRQGL 183 (331)
Q Consensus 125 ~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~---------~~i~~~~~di~~---------~---~~~~~~l 183 (331)
+.+..+++....+-.+.++++ +.|+||.++++-+.. .++.+..+|+.. + ..--+.|
T Consensus 31 ~~~d~ksi~~~~Kylllmfes---~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~EL 107 (182)
T COG2143 31 VFDDNKSISPNDKYLLLMFES---NGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEEL 107 (182)
T ss_pred hHHHHHhcCccCcEEEEEEcC---CCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHH
Confidence 555666777777777777764 689999988776643 123333444321 0 0111233
Q ss_pred HhhcCCCCccee-eecC
Q 020081 184 KVYSNWSSYPQL-YIKG 199 (331)
Q Consensus 184 ~~~~~~~~vP~i-fi~G 199 (331)
.+.+++++.|++ |.++
T Consensus 108 a~kf~vrstPtfvFfdk 124 (182)
T COG2143 108 AQKFAVRSTPTFVFFDK 124 (182)
T ss_pred HHHhccccCceEEEEcC
Confidence 344599999999 5553
No 402
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=94.51 E-value=0.1 Score=45.11 Aligned_cols=66 Identities=18% Similarity=0.190 Sum_probs=51.1
Q ss_pred CCCCcchHHHHHHHhhcCCccEEEEecC-C--HHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHHH
Q 020081 256 SPRCGFSSKVVNALKEEGVNFGSFDILT-D--EEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKD 321 (331)
Q Consensus 256 ~~~Cp~C~~a~~~l~~~~v~~~~~dv~~-~--~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~~ 321 (331)
.+.||+|.+++-+|...|++|+.+.++. . .....++.+..-...+|++..||..+.....+..+..
T Consensus 5 ~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~ 73 (210)
T TIGR01262 5 YWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLE 73 (210)
T ss_pred CCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHH
Confidence 3579999999999999999999988763 1 2223456777778899999999988887766666543
No 403
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=94.37 E-value=0.12 Score=40.94 Aligned_cols=17 Identities=18% Similarity=0.040 Sum_probs=13.2
Q ss_pred CCCCChhHHHHHHHHHh
Q 020081 25 EEPKCGFSRQVVDILKD 41 (331)
Q Consensus 25 ~~~~C~~C~~~~~~l~~ 41 (331)
|+.||++|.+..+.|.+
T Consensus 31 ~a~~C~~C~~~~p~l~~ 47 (126)
T cd03012 31 WTYCCINCLHTLPYLTD 47 (126)
T ss_pred ECCCCccHHHHHHHHHH
Confidence 45699999987776665
No 404
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=94.29 E-value=0.15 Score=41.02 Aligned_cols=61 Identities=13% Similarity=0.242 Sum_probs=44.1
Q ss_pred CCEEEEEecCCCCCCCcchHHHHHHhhcCCCCeEEEecCCCHHHHHHHHhhcCCC----CcceeeecCccccch
Q 020081 136 SPVMLFMKGKPEEPKCGFSGKVVEILKQGKVDFGSFDILTDEEVRQGLKVYSNWS----SYPQLYIKGELIGGS 205 (331)
Q Consensus 136 ~~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~~di~~~~~~~~~l~~~~~~~----~vP~ifi~G~~vgg~ 205 (331)
-.+++|.. |+|+.|..-.+.++..+++...+..++-..++ +.+|++ +-=|..|||.+|.|.
T Consensus 26 ~~~~vyks-----PnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK----~~~gIp~e~~SCHT~VI~Gy~vEGH 90 (149)
T COG3019 26 TEMVVYKS-----PNCGCCDEWAQHMKANGFEVKVVETDDFLALK----RRLGIPYEMQSCHTAVINGYYVEGH 90 (149)
T ss_pred eeEEEEeC-----CCCccHHHHHHHHHhCCcEEEEeecCcHHHHH----HhcCCChhhccccEEEEcCEEEecc
Confidence 34555544 79999999999999999888887765434444 333543 456779999999774
No 405
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=94.19 E-value=0.19 Score=40.66 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=36.4
Q ss_pred HHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc-------CCCCeEEEecCCCHHHHHHHHhhcCCCCcceee
Q 020081 129 LESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ-------GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQLY 196 (331)
Q Consensus 129 ~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~if 196 (331)
+.++....+++|+.+ |+.|||+|+.-.+.|++ .++.+..+..+.........++. +. .+|.+.
T Consensus 17 l~~~~~~~~~vl~f~---~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~-~~-~~p~~~ 86 (149)
T cd02970 17 LSALLGEGPVVVVFY---RGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGK-FL-PFPVYA 86 (149)
T ss_pred hHHHhcCCCEEEEEE---CCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhc-CC-CCeEEE
Confidence 445555556655554 34699999876555543 46777777766544444344333 44 467543
No 406
>PTZ00056 glutathione peroxidase; Provisional
Probab=94.17 E-value=0.11 Score=45.06 Aligned_cols=55 Identities=16% Similarity=0.339 Sum_probs=34.3
Q ss_pred CCEEEEEecCCCCCCCcchHHHHHHhhc-------CCCCeEEEecC-------CC-HHHHHHHHhhcCCCCccee
Q 020081 136 SPVMLFMKGKPEEPKCGFSGKVVEILKQ-------GKVDFGSFDIL-------TD-EEVRQGLKVYSNWSSYPQL 195 (331)
Q Consensus 136 ~~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~~i~~~~~di~-------~~-~~~~~~l~~~~~~~~vP~i 195 (331)
.+++|..+ |+.|||+|..-.+.|++ .++.+.-++++ .+ ++++++++++ |. ++|.+
T Consensus 39 Gkvvlv~f---wAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~-~~-~fpvl 108 (199)
T PTZ00056 39 NKVLMITN---SASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKN-KI-KYNFF 108 (199)
T ss_pred CCEEEEEE---ECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHc-CC-Cceee
Confidence 35666666 77899999865444443 46666666542 22 4567666554 65 46765
No 407
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=94.11 E-value=0.15 Score=46.00 Aligned_cols=31 Identities=16% Similarity=0.361 Sum_probs=22.2
Q ss_pred CEEEEecCCCCCCCCcchHHHHHHHh----hcCCccEEEE
Q 020081 245 PVMLFMKGNPDSPRCGFSSKVVNALK----EEGVNFGSFD 280 (331)
Q Consensus 245 ~v~vy~k~~p~~~~Cp~C~~a~~~l~----~~~v~~~~~d 280 (331)
.|++|+ .|.||||+++.+-+. ..+|.+..+.
T Consensus 120 ~I~vFt-----Dp~CpyC~kl~~~l~~~~~~g~V~v~~ip 154 (251)
T PRK11657 120 IVYVFA-----DPNCPYCKQFWQQARPWVDSGKVQLRHIL 154 (251)
T ss_pred EEEEEE-----CCCChhHHHHHHHHHHHhhcCceEEEEEe
Confidence 477888 899999999966654 3236666554
No 408
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=94.09 E-value=0.17 Score=45.21 Aligned_cols=59 Identities=20% Similarity=0.234 Sum_probs=44.9
Q ss_pred CCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechhhH
Q 020081 27 PKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIV 86 (331)
Q Consensus 27 ~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~ 86 (331)
+.||+|++++-.|..+|++|..+.++-... ...+.+++-..++|++..+|..+.....+
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~inP~g~vPvL~~~g~~l~ES~aI 75 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLAPGTHPPFLTYNTEVKTDVNKI 75 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHCcCCCCCEEEECCEEeecHHHH
Confidence 579999999999999999998887764322 23455588888999998888777554433
No 409
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=94.09 E-value=0.061 Score=44.43 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=16.6
Q ss_pred CCEEEEEecCCCCCCChhHHHHHHHHHh
Q 020081 14 HPVMLFMKGTPEEPKCGFSRQVVDILKD 41 (331)
Q Consensus 14 ~~vvvf~~~~~~~~~C~~C~~~~~~l~~ 41 (331)
++||...++ |.|||+|+..-+.|.+
T Consensus 33 gKvV~lyFs---A~wC~pCR~FTP~Lk~ 57 (157)
T KOG2501|consen 33 GKVVGLYFS---AHWCPPCRDFTPILKD 57 (157)
T ss_pred CcEEEEEEE---EEECCchhhCCchHHH
Confidence 366666655 4599999975554444
No 410
>smart00594 UAS UAS domain.
Probab=94.07 E-value=0.23 Score=39.33 Aligned_cols=73 Identities=14% Similarity=0.159 Sum_probs=42.1
Q ss_pred cchhHHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHH-HhhcCCC------CeE--EEecCCCHHHHHHHHhhcCCCC
Q 020081 121 LSATLTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVE-ILKQGKV------DFG--SFDILTDEEVRQGLKVYSNWSS 191 (331)
Q Consensus 121 ~~~~~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~-~l~~~~i------~~~--~~di~~~~~~~~~l~~~~~~~~ 191 (331)
......+.++...++.+.++...++ +||++|..+.+ +|....+ .|. .+|+...+ -.+.. ..+++.+
T Consensus 12 ~~gs~~~a~~~Ak~~~K~~lv~~~~---~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~e-g~~l~-~~~~~~~ 86 (122)
T smart00594 12 YQGSLEAAKQEASRQRRLLWLYLHS---QDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSE-GQRVS-QFYKLDS 86 (122)
T ss_pred eeCCHHHHHHHHHhhcCCEEEEEeC---CCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChh-HHHHH-HhcCcCC
Confidence 3344566666666665555544433 68999986643 3433211 344 45766443 23333 4459999
Q ss_pred ccee-eec
Q 020081 192 YPQL-YIK 198 (331)
Q Consensus 192 vP~i-fi~ 198 (331)
+|++ +++
T Consensus 87 ~P~~~~l~ 94 (122)
T smart00594 87 FPYVAIVD 94 (122)
T ss_pred CCEEEEEe
Confidence 9999 444
No 411
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=93.97 E-value=0.1 Score=42.94 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=32.5
Q ss_pred CCEEEEEecCCCCCCChhHHHHHHHHHh-------CCCCeEEEEecC-------C-HHHHHHHhhhhCCCcccEEE
Q 020081 14 HPVMLFMKGTPEEPKCGFSRQVVDILKD-------EKVEFGSFNILS-------D-NEVREGLKKFSNWPTFPQLY 74 (331)
Q Consensus 14 ~~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~-------~-~~~~~~~~~~~~~~t~P~if 74 (331)
.++||..+ |+.||| |..-.+.|.+ .++.+.-+.++. + .++++.+.+..+ -++|.+.
T Consensus 22 Gk~vvl~f---watwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~-~~fp~~~ 92 (152)
T cd00340 22 GKVLLIVN---VASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYG-VTFPMFA 92 (152)
T ss_pred CCEEEEEE---EcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcC-CCceeee
Confidence 34444443 677999 9986666665 356666665532 2 345666553234 4688653
No 412
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=93.91 E-value=0.13 Score=38.74 Aligned_cols=61 Identities=16% Similarity=0.185 Sum_probs=38.1
Q ss_pred CCEEEEEecCCCCCCCcchHHHHHHhhc----C--CCCeEEEecC-CCHHHHHHHHhhcCCCCcceee--ecCcc
Q 020081 136 SPVMLFMKGKPEEPKCGFSGKVVEILKQ----G--KVDFGSFDIL-TDEEVRQGLKVYSNWSSYPQLY--IKGEL 201 (331)
Q Consensus 136 ~~vvvf~~~~~~~~~C~~C~~~~~~l~~----~--~i~~~~~di~-~~~~~~~~l~~~~~~~~vP~if--i~G~~ 201 (331)
.+++++.+ |++||++|+.+.+.|.+ . .+.+..+|+. .+....+.+.. .+..+|++. .+|..
T Consensus 32 ~~~~~v~f---~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDF---WAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGV--AVRSIPTLLLFKDGKE 101 (127)
T ss_pred CceEEEEE---EcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhh--hhccCCeEEEEeCcch
Confidence 44444443 34799999988877765 2 4678888886 56666644421 166668774 45543
No 413
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.22 Score=43.97 Aligned_cols=71 Identities=23% Similarity=0.175 Sum_probs=53.3
Q ss_pred CCEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhc-CCCCcCEEEECCeEEeeHHHHHHHH
Q 020081 244 SPVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYS-NWPTFPQLYHKGELIGGCDIVMELK 320 (331)
Q Consensus 244 ~~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~-g~~~vP~ifi~g~~igg~~~~~~~~ 320 (331)
..|.+|+ .-.|||..|++=.|+.+||+|+.++++-.. .-+.|.+.. =...||++..||+.|+=--.+.++.
T Consensus 8 ~~vrL~~-----~w~sPfa~R~~iaL~~KgI~yE~veedl~~-Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYi 79 (231)
T KOG0406|consen 8 GTVKLLG-----MWFSPFAQRVRIALKLKGIPYEYVEEDLTN-KSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYI 79 (231)
T ss_pred CeEEEEE-----eecChHHHHHHHHHHhcCCceEEEecCCCC-CCHHHHHhccccccCCEEEECCceehhhHHHHHHH
Confidence 5588888 346999999999999999999999886432 223355555 5678999999999987555554443
No 414
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=93.85 E-value=0.18 Score=36.32 Aligned_cols=57 Identities=12% Similarity=0.038 Sum_probs=43.7
Q ss_pred CCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHHH
Q 020081 258 RCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKD 321 (331)
Q Consensus 258 ~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~~ 321 (331)
..+.|.++.-+|+..|++|+.++...... .+....||.+.+||+.|+...-+..+.+
T Consensus 16 ~~~~~~kv~~~L~elglpye~~~~~~~~~-------~~P~GkVP~L~~dg~vI~eS~aIl~yL~ 72 (74)
T cd03079 16 DNASCLAVQTFLKMCNLPFNVRCRANAEF-------MSPSGKVPFIRVGNQIVSEFGPIVQFVE 72 (74)
T ss_pred CCCCHHHHHHHHHHcCCCcEEEecCCccc-------cCCCCcccEEEECCEEEeCHHHHHHHHh
Confidence 67899999999999999999886532111 1223579999999999998887776654
No 415
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=93.82 E-value=0.028 Score=49.20 Aligned_cols=54 Identities=15% Similarity=0.257 Sum_probs=43.4
Q ss_pred CCCCChhHHHHHHHHHhC-------CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEe
Q 020081 25 EEPKCGFSRQVVDILKDE-------KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELL 80 (331)
Q Consensus 25 ~~~~C~~C~~~~~~l~~~-------~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~v 80 (331)
.+||||.|+..++.|... +|...++|+..++-+.-.+. ++..||+ .=.++|.+-
T Consensus 47 ~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~-vtaLptI-YHvkDGeFr 107 (248)
T KOG0913|consen 47 GAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFL-VTALPTI-YHVKDGEFR 107 (248)
T ss_pred cCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeE-EEecceE-EEeeccccc
Confidence 467999999999999984 67899999999999988888 6776665 444577653
No 416
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=93.80 E-value=0.14 Score=43.87 Aligned_cols=38 Identities=8% Similarity=-0.039 Sum_probs=28.4
Q ss_pred CCEEEEEecCCCCCCChhHHHHHHHHHhC---CCCe------EEEEecCC
Q 020081 14 HPVMLFMKGTPEEPKCGFSRQVVDILKDE---KVEF------GSFNILSD 54 (331)
Q Consensus 14 ~~vvvf~~~~~~~~~C~~C~~~~~~l~~~---~i~~------~~vdi~~~ 54 (331)
.+|.|.-+ ||.||++|+.-.++|..+ ++++ .-||.++.
T Consensus 59 GKV~lvn~---~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~ 105 (184)
T TIGR01626 59 GKVRVVHH---IAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDA 105 (184)
T ss_pred CCEEEEEE---EecCCChhhccchHHHHHHHcCCCcccccceEEEECccc
Confidence 45555443 677999999988888774 6788 78888765
No 417
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.1 Score=43.80 Aligned_cols=60 Identities=13% Similarity=0.152 Sum_probs=44.5
Q ss_pred CCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEE-CCeEEeeHHHHHHH
Q 020081 258 RCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYH-KGELIGGCDIVMEL 319 (331)
Q Consensus 258 ~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi-~g~~igg~~~~~~~ 319 (331)
.||||.+|+-++--++|+++.+-+..+++. -=.+.-|...||.+.- +|++++-.-|+..+
T Consensus 8 HCPfcvrarmi~Gl~nipve~~vL~nDDe~--Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y 68 (215)
T COG2999 8 HCPFCVRARMIFGLKNIPVELHVLLNDDEE--TPIRMIGQKQVPILQKEDGRAMPESLDIVHY 68 (215)
T ss_pred cChHHHHHHHHhhccCCChhhheeccCccc--ChhhhhcccccceEEccccccchhhhHHHHH
Confidence 899999999999999999999887655442 1223458999999975 67888754444433
No 418
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=93.72 E-value=0.18 Score=40.89 Aligned_cols=49 Identities=24% Similarity=0.227 Sum_probs=32.7
Q ss_pred hcCCCEEEEEecCCCCC-CCcchHHHHHHhh-------cCCCCeEEEecCCCHHHHHHHHh
Q 020081 133 INSSPVMLFMKGKPEEP-KCGFSGKVVEILK-------QGKVDFGSFDILTDEEVRQGLKV 185 (331)
Q Consensus 133 ~~~~~vvvf~~~~~~~~-~C~~C~~~~~~l~-------~~~i~~~~~di~~~~~~~~~l~~ 185 (331)
.+..+++|+.+ +. |||+|..-.+.|+ ..++.+..+....++.+++++.+
T Consensus 26 ~~gk~~vv~f~----~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~ 82 (146)
T PF08534_consen 26 FKGKPVVVNFW----ASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKK 82 (146)
T ss_dssp GTTSEEEEEEE----STTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHH
T ss_pred hCCCeEEEEEE----ccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHh
Confidence 33444455444 46 9999986654443 35688888888888777777755
No 419
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=93.64 E-value=0.14 Score=42.22 Aligned_cols=49 Identities=22% Similarity=0.353 Sum_probs=28.6
Q ss_pred CCCCChhHHHHHHHHHh-------CCCCeEEEEe--------cCCHHHHHHHhhhhCCCcccEEE
Q 020081 25 EEPKCGFSRQVVDILKD-------EKVEFGSFNI--------LSDNEVREGLKKFSNWPTFPQLY 74 (331)
Q Consensus 25 ~~~~C~~C~~~~~~l~~-------~~i~~~~vdi--------~~~~~~~~~~~~~~~~~t~P~if 74 (331)
|++|||+|..-.+.|.+ .++.+.-++. +....+++.+.+..+ -++|.+.
T Consensus 30 ~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~-~~fp~~~ 93 (153)
T TIGR02540 30 VASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYG-VTFPMFS 93 (153)
T ss_pred eCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcC-CCCCccc
Confidence 67799999876654444 2567777764 112445555542234 3577655
No 420
>PTZ00256 glutathione peroxidase; Provisional
Probab=93.53 E-value=0.15 Score=43.54 Aligned_cols=48 Identities=27% Similarity=0.389 Sum_probs=28.8
Q ss_pred CCCCChhHHHHHHHHHh-------CCCCeEEEEecC-------C-HHHHHHHhhhhCCCcccEE
Q 020081 25 EEPKCGFSRQVVDILKD-------EKVEFGSFNILS-------D-NEVREGLKKFSNWPTFPQL 73 (331)
Q Consensus 25 ~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~-------~-~~~~~~~~~~~~~~t~P~i 73 (331)
|+.|||+|+.-.+.|.+ .++.+.-++++. + .++.+.+.+-.+. ++|.+
T Consensus 49 ~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~-~fpv~ 111 (183)
T PTZ00256 49 VACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNV-DFPLF 111 (183)
T ss_pred ECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCC-CCCCc
Confidence 56799999975555553 367777776531 1 4455554423343 57765
No 421
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=93.51 E-value=0.13 Score=55.80 Aligned_cols=25 Identities=16% Similarity=-0.029 Sum_probs=19.9
Q ss_pred CCEEEEEecCCCCCCCcchHHHHHHhhc
Q 020081 136 SPVMLFMKGKPEEPKCGFSGKVVEILKQ 163 (331)
Q Consensus 136 ~~vvvf~~~~~~~~~C~~C~~~~~~l~~ 163 (331)
.+++|..| |+.||++|+...+.|++
T Consensus 420 GK~vll~F---WAsWC~pC~~e~P~L~~ 444 (1057)
T PLN02919 420 GKVVILDF---WTYCCINCMHVLPDLEF 444 (1057)
T ss_pred CCEEEEEE---ECCcChhHHhHhHHHHH
Confidence 56777777 78999999988777764
No 422
>PLN02378 glutathione S-transferase DHAR1
Probab=93.45 E-value=0.23 Score=43.33 Aligned_cols=54 Identities=15% Similarity=0.219 Sum_probs=40.9
Q ss_pred CCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEee
Q 020081 27 PKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLG 81 (331)
Q Consensus 27 ~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vg 81 (331)
++||+|+++.-+|.++|++|..+.++-... ...+.+++-..++|.+..+|..+.
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~l~inP~G~VPvL~~~~~~l~ 71 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDK-PQWFLDISPQGKVPVLKIDDKWVT 71 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccC-CHHHHHhCCCCCCCEEEECCEEec
Confidence 379999999999999999988766643211 223555888899999988886654
No 423
>PTZ00256 glutathione peroxidase; Provisional
Probab=93.33 E-value=0.19 Score=42.88 Aligned_cols=62 Identities=15% Similarity=0.288 Sum_probs=34.5
Q ss_pred HHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhh-------cCCCCeEEEecC--------CCHHHHHHHHhhcCCCCcc
Q 020081 129 LESLINSSPVMLFMKGKPEEPKCGFSGKVVEILK-------QGKVDFGSFDIL--------TDEEVRQGLKVYSNWSSYP 193 (331)
Q Consensus 129 ~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~-------~~~i~~~~~di~--------~~~~~~~~l~~~~~~~~vP 193 (331)
+.++. .+.++|+.. |+.|||+|+.-.+.|+ ..++.+.-++++ ..+++.+.+++.+|+. +|
T Consensus 35 Ls~~~-Gk~vvlv~n---~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~-fp 109 (183)
T PTZ00256 35 LSKFK-GKKAIIVVN---VACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVD-FP 109 (183)
T ss_pred HHHhC-CCcEEEEEE---ECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCC-CC
Confidence 44443 344444333 5679999986554444 246666666542 1245566655333654 78
Q ss_pred ee
Q 020081 194 QL 195 (331)
Q Consensus 194 ~i 195 (331)
.+
T Consensus 110 v~ 111 (183)
T PTZ00256 110 LF 111 (183)
T ss_pred Cc
Confidence 76
No 424
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=93.31 E-value=0.12 Score=40.23 Aligned_cols=38 Identities=24% Similarity=0.477 Sum_probs=27.9
Q ss_pred CCCcchHHHHHHhhcCCCCeEEEecCCC----HHHHHHHHhh
Q 020081 149 PKCGFSGKVVEILKQGKVDFGSFDILTD----EEVRQGLKVY 186 (331)
Q Consensus 149 ~~C~~C~~~~~~l~~~~i~~~~~di~~~----~~~~~~l~~~ 186 (331)
+.|.-|+++.++|++.++.|..+|+.++ .++.+.+...
T Consensus 4 ~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~ 45 (110)
T PF03960_consen 4 PNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKL 45 (110)
T ss_dssp TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHh
Confidence 5899999999999999999999999876 3444444333
No 425
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=92.92 E-value=0.21 Score=44.67 Aligned_cols=56 Identities=27% Similarity=0.344 Sum_probs=46.3
Q ss_pred CCCCCC-CcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHH
Q 020081 253 NPDSPR-CGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIV 316 (331)
Q Consensus 253 ~p~~~~-Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~ 316 (331)
++..|+ .|||-++.-+|+..+|+|+.++-. +..++...++|-|-.||+++.+-+.+
T Consensus 54 ~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~--------~~~rSr~G~lPFIELNGe~iaDS~~I 110 (281)
T KOG4244|consen 54 TKTCPNLSPFCLKVETFLRAYDIPYEIVDCS--------LKRRSRNGTLPFIELNGEHIADSDLI 110 (281)
T ss_pred cCCCCCCChHHHHHHHHHHHhCCCceecccc--------ceeeccCCCcceEEeCCeeccccHHH
Confidence 444555 788999999999999999998875 44556777999999999999987644
No 426
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=92.88 E-value=0.55 Score=36.23 Aligned_cols=72 Identities=17% Similarity=0.391 Sum_probs=48.5
Q ss_pred HHHHHHhc---CCCEEEEEecCCCCCCCcchHHHHHHhhc------CCCCeEEEecCCCHHHHHHHHhhcCCCC-ccee-
Q 020081 127 SRLESLIN---SSPVMLFMKGKPEEPKCGFSGKVVEILKQ------GKVDFGSFDILTDEEVRQGLKVYSNWSS-YPQL- 195 (331)
Q Consensus 127 ~~~~~~~~---~~~vvvf~~~~~~~~~C~~C~~~~~~l~~------~~i~~~~~di~~~~~~~~~l~~~~~~~~-vP~i- 195 (331)
+.+++++. ..++++|--| .+||=+..+.+-|+. ..+++-.+|+.++.++.+.+.+.+|+.- -||+
T Consensus 8 eql~~i~~~S~~~~~~iFKHS----t~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~i 83 (105)
T PF11009_consen 8 EQLEEILEESKEKPVLIFKHS----TRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVI 83 (105)
T ss_dssp HHHHHHHHH---SEEEEEEE-----TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEE
T ss_pred HHHHHHHHhcccCcEEEEEeC----CCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEE
Confidence 44555554 5677777665 579999988877764 2389999999999999888888877653 5999
Q ss_pred -eecCccc
Q 020081 196 -YIKGELI 202 (331)
Q Consensus 196 -fi~G~~v 202 (331)
+.||+.+
T Consensus 84 li~~g~~v 91 (105)
T PF11009_consen 84 LIKNGKVV 91 (105)
T ss_dssp EEETTEEE
T ss_pred EEECCEEE
Confidence 5588877
No 427
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=92.77 E-value=0.18 Score=40.60 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=24.7
Q ss_pred hhHHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHh
Q 020081 123 ATLTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEIL 161 (331)
Q Consensus 123 ~~~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l 161 (331)
.+..+.++...+.++.++..+++ +||++|+.+.+..
T Consensus 10 ~~~eeal~~Ak~~~Kpvmv~f~s---dwC~~Ck~l~k~~ 45 (130)
T cd02960 10 QTYEEGLYKAKKSNKPLMVIHHL---EDCPHSQALKKAF 45 (130)
T ss_pred hhHHHHHHHHHHCCCeEEEEEeC---CcCHhHHHHHHHh
Confidence 34566677777666655555643 7999999887654
No 428
>PLN02412 probable glutathione peroxidase
Probab=92.76 E-value=0.33 Score=40.73 Aligned_cols=56 Identities=21% Similarity=0.339 Sum_probs=32.3
Q ss_pred CEEEEEecCCCCCCChhHHHHHHHHHh-------CCCCeEEEEec--------CCHHHHHHHhhhhCCCcccEEE
Q 020081 15 PVMLFMKGTPEEPKCGFSRQVVDILKD-------EKVEFGSFNIL--------SDNEVREGLKKFSNWPTFPQLY 74 (331)
Q Consensus 15 ~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~--------~~~~~~~~~~~~~~~~t~P~if 74 (331)
+++|..+ |++|||+|++-.+.|.+ .|+.+.-++.+ ...++...+.+-.+ -++|.+.
T Consensus 30 k~vlv~f---~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~-~~fpvl~ 100 (167)
T PLN02412 30 KVLLIVN---VASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFK-AEFPIFD 100 (167)
T ss_pred CEEEEEE---eCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccC-CCCceEe
Confidence 4444443 56699999964444444 36777777653 22455555532334 4688765
No 429
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=92.72 E-value=0.51 Score=33.70 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=39.5
Q ss_pred hHHHHHHHHHhCCCCeEEEEecCCH--HHHHHHhhhhCCCcccEEEEC-CEEeechhhH
Q 020081 31 FSRQVVDILKDEKVEFGSFNILSDN--EVREGLKKFSNWPTFPQLYCK-GELLGGCDIV 86 (331)
Q Consensus 31 ~C~~~~~~l~~~~i~~~~vdi~~~~--~~~~~~~~~~~~~t~P~ifi~-g~~vgg~~~~ 86 (331)
.|.+++-+|..+|++|..++++... ....++.+++...++|.+..+ |..+.....+
T Consensus 10 ~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI 68 (77)
T cd03057 10 CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAI 68 (77)
T ss_pred chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHH
Confidence 4788999999999998887765321 223445558888999988877 6666544433
No 430
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=92.71 E-value=0.54 Score=33.31 Aligned_cols=59 Identities=10% Similarity=0.046 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHhCCCCeEEEEecCC--HHHHHHHhhhhCCCcccEEEECCEEeechhhHHh
Q 020081 30 GFSRQVVDILKDEKVEFGSFNILSD--NEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIA 88 (331)
Q Consensus 30 ~~C~~~~~~l~~~~i~~~~vdi~~~--~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~~ 88 (331)
+.|.+++-+|...|++|..+.++.. ......+.+++...++|.+..+|..+.....+..
T Consensus 9 ~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~ 69 (76)
T cd03046 9 SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIIL 69 (76)
T ss_pred CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHH
Confidence 4688999999999999988777532 1223445557788899999888887766555444
No 431
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=92.66 E-value=0.26 Score=43.97 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=32.0
Q ss_pred CEEEEEecCCCCCCChhHHHHHHHHHh-------CCCCeEEEEec--------CCHHHHHHHhhhhCCCcccEE
Q 020081 15 PVMLFMKGTPEEPKCGFSRQVVDILKD-------EKVEFGSFNIL--------SDNEVREGLKKFSNWPTFPQL 73 (331)
Q Consensus 15 ~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~--------~~~~~~~~~~~~~~~~t~P~i 73 (331)
+++|..+ |++||++|..-.+.|.+ .|+.+.-++.+ ..+++++.+.+..+ .++|.+
T Consensus 100 K~vvl~F---wAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g-~~fPvl 169 (236)
T PLN02399 100 KVLLIVN---VASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFK-AEFPIF 169 (236)
T ss_pred CeEEEEE---EcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcC-CCCccc
Confidence 4444443 57799999875554444 36777777763 12455655532233 457753
No 432
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.62 E-value=0.54 Score=41.54 Aligned_cols=65 Identities=18% Similarity=0.062 Sum_probs=48.5
Q ss_pred CCEEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhh-CCCcccEEEECCEEeechh
Q 020081 14 HPVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFS-NWPTFPQLYCKGELLGGCD 84 (331)
Q Consensus 14 ~~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~-~~~t~P~ifi~g~~vgg~~ 84 (331)
..|.+|+.- .||+.+|++-.|+.+||+|..++++-... .+.|.+.+ -...+|++..||+.|.-..
T Consensus 8 ~~vrL~~~w-----~sPfa~R~~iaL~~KgI~yE~veedl~~K-s~~ll~~np~hkKVPvL~Hn~k~i~ESl 73 (231)
T KOG0406|consen 8 GTVKLLGMW-----FSPFAQRVRIALKLKGIPYEYVEEDLTNK-SEWLLEKNPVHKKVPVLEHNGKPICESL 73 (231)
T ss_pred CeEEEEEee-----cChHHHHHHHHHHhcCCceEEEecCCCCC-CHHHHHhccccccCCEEEECCceehhhH
Confidence 458888765 59999999999999999988888765422 12233344 5678999999999975433
No 433
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=92.55 E-value=0.15 Score=42.72 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=40.2
Q ss_pred CChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEE-CCEEeechh
Q 020081 28 KCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYC-KGELLGGCD 84 (331)
Q Consensus 28 ~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi-~g~~vgg~~ 84 (331)
+||||.+++-++--++|++..+-+..|.+. .-. ++-|...||.+.+ +|+..+..-
T Consensus 8 HCPfcvrarmi~Gl~nipve~~vL~nDDe~-Tp~-rmiG~KqVPiL~Kedg~~m~ESl 63 (215)
T COG2999 8 HCPFCVRARMIFGLKNIPVELHVLLNDDEE-TPI-RMIGQKQVPILQKEDGRAMPESL 63 (215)
T ss_pred cChHHHHHHHHhhccCCChhhheeccCccc-Chh-hhhcccccceEEccccccchhhh
Confidence 899999999999999999887766544331 112 2558999998887 477765433
No 434
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=92.52 E-value=0.4 Score=43.55 Aligned_cols=56 Identities=18% Similarity=0.250 Sum_probs=42.0
Q ss_pred CChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechh
Q 020081 28 KCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCD 84 (331)
Q Consensus 28 ~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~ 84 (331)
+||+|+++.-+|.++|++|..+.++-... ...+.+++-.-++|.+..+|..+....
T Consensus 72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~~-~~~fl~iNP~GkVPvL~~d~~~L~ES~ 127 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHLPYDMKLVDLTNK-PEWFLKISPEGKVPVVKLDEKWVADSD 127 (265)
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEeCcCcC-CHHHHhhCCCCCCCEEEECCEEEecHH
Confidence 79999999999999999988776653321 233455777889999998887664443
No 435
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=92.46 E-value=0.46 Score=38.56 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=35.1
Q ss_pred HHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc-------CCCCeEEEecCCCHHHHHHHHhhcCCCCccee
Q 020081 129 LESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ-------GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL 195 (331)
Q Consensus 129 ~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i 195 (331)
+.++..++.++|+.+ ++.||+.|....+.|++ .++.+..+..+..+.++++++++ +. .+|.+
T Consensus 22 l~~~~g~k~~vl~f~---~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~-~~-~~~~~ 90 (149)
T cd03018 22 LSEFRGRKPVVLVFF---PLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEEN-GL-TFPLL 90 (149)
T ss_pred HHHHcCCCeEEEEEe---CCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhc-CC-CceEe
Confidence 445444344444444 24689999865554443 46777777765545566666544 54 45643
No 436
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=92.32 E-value=0.31 Score=40.08 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=32.1
Q ss_pred CCEEEEEecCCCCCCCcchHHHHHHhhc-------CCCCeEEEecC-------CC-HHHHHHHHhhcCCCCccee
Q 020081 136 SPVMLFMKGKPEEPKCGFSGKVVEILKQ-------GKVDFGSFDIL-------TD-EEVRQGLKVYSNWSSYPQL 195 (331)
Q Consensus 136 ~~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~~i~~~~~di~-------~~-~~~~~~l~~~~~~~~vP~i 195 (331)
.+++|..+ |+.||| |..-.+.|++ .++.+.-++++ .+ +++++.+++..+. ++|.+
T Consensus 22 Gk~vvl~f---watwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~-~fp~~ 91 (152)
T cd00340 22 GKVLLIVN---VASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGV-TFPMF 91 (152)
T ss_pred CCEEEEEE---EcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCC-Cceee
Confidence 35566666 678999 9876555554 35555555442 12 3456666542354 57876
No 437
>PLN02412 probable glutathione peroxidase
Probab=92.29 E-value=0.38 Score=40.36 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=32.7
Q ss_pred CEEEEEecCCCCCCCcchHHHHHHhhc-------CCCCeEEEecC--------CCHHHHHHHHhhcCCCCcceee
Q 020081 137 PVMLFMKGKPEEPKCGFSGKVVEILKQ-------GKVDFGSFDIL--------TDEEVRQGLKVYSNWSSYPQLY 196 (331)
Q Consensus 137 ~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~~i~~~~~di~--------~~~~~~~~l~~~~~~~~vP~if 196 (331)
+++|..+ |+.|||+|.+-.+.|++ .++.+.-++.+ ...++++.+.+.+++ ++|.+.
T Consensus 30 k~vlv~f---~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~-~fpvl~ 100 (167)
T PLN02412 30 KVLLIVN---VASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKA-EFPIFD 100 (167)
T ss_pred CEEEEEE---eCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCC-CCceEe
Confidence 5566555 56899999864444433 45666555542 224556665344365 478874
No 438
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=92.15 E-value=0.36 Score=41.58 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=44.5
Q ss_pred CCCEEEEEecCCCCCCCcchHHHHHHhhcCCCC--eEEEecCCCHHHHHHHHhhcCCCCcceeeecCcccc
Q 020081 135 SSPVMLFMKGKPEEPKCGFSGKVVEILKQGKVD--FGSFDILTDEEVRQGLKVYSNWSSYPQLYIKGELIG 203 (331)
Q Consensus 135 ~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~--~~~~di~~~~~~~~~l~~~~~~~~vP~ifi~G~~vg 203 (331)
.-.|.+|+.. +|..|-.+.+.|++.++- ...+|...-+..+ + +. ++-++|.+|++|+.+-
T Consensus 10 ~~~VkI~~Hk-----tC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~~--~-~~-~V~SvP~Vf~DGel~~ 71 (265)
T COG5494 10 EMEVKIFTHK-----TCVSSYMLFEYLENKGLLGKVKIIDAELPPFLA--F-EK-GVISVPSVFIDGELVY 71 (265)
T ss_pred heEEEEEEec-----chHHHHHHHHHHHhcCCCCCceEEEcCCChHHH--h-hc-ceeecceEEEcCeEEE
Confidence 3456778763 799999999999997763 5566665545443 2 33 7899999999999884
No 439
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=92.10 E-value=0.28 Score=38.04 Aligned_cols=80 Identities=18% Similarity=0.332 Sum_probs=52.9
Q ss_pred HHHHHhhCC-CEEEEEecCCCCCCChhHHHHHHHHHhC----CC--CeEEEEecCCHHHHHHHhhhhCCCcccEEEECCE
Q 020081 6 RLQQLLDSH-PVMLFMKGTPEEPKCGFSRQVVDILKDE----KV--EFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGE 78 (331)
Q Consensus 6 ~~~~~i~~~-~vvvf~~~~~~~~~C~~C~~~~~~l~~~----~i--~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~ 78 (331)
.+.+.+..+ ..|+|..++| -.++-+..+.-+|-++ +- ....++-....+++..++ +..+|++ .+|.+|+
T Consensus 18 ~ld~~l~~~~~~vlf~~gDp--~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~g-v~~~PaL-vf~R~g~ 93 (107)
T PF07449_consen 18 TLDAFLAAPGDAVLFFAGDP--ARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFG-VRRWPAL-VFFRDGR 93 (107)
T ss_dssp CHHHHHHCCSCEEEEESS-T--TTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT--TSSSEE-EEEETTE
T ss_pred hHHHHHhCCCcEEEEECCCC--CcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhC-CccCCeE-EEEECCE
Confidence 355666554 4677776644 2566666666566664 22 234455445578888888 8899999 9999999
Q ss_pred EeechhhHHhh
Q 020081 79 LLGGCDIVIAM 89 (331)
Q Consensus 79 ~vgg~~~~~~~ 89 (331)
++|...+++.|
T Consensus 94 ~lG~i~gi~dW 104 (107)
T PF07449_consen 94 YLGAIEGIRDW 104 (107)
T ss_dssp EEEEEESSSTH
T ss_pred EEEEecCeecc
Confidence 99988877654
No 440
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=92.03 E-value=0.58 Score=39.19 Aligned_cols=60 Identities=18% Similarity=0.383 Sum_probs=33.3
Q ss_pred HHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHh-------CCCCeEEEEecC-------C-HHHHHHHhhhhCCCcccE
Q 020081 8 QQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKD-------EKVEFGSFNILS-------D-NEVREGLKKFSNWPTFPQ 72 (331)
Q Consensus 8 ~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~-------~-~~~~~~~~~~~~~~t~P~ 72 (331)
.++.....++||. |++|||.|.+..+.|.+ .++.+..+.++. + .++++.+. -.+.+ +|.
T Consensus 20 ~~~~~~k~~ll~f----~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~-~~~~~-~~~ 93 (171)
T cd02969 20 ADFADGKALVVMF----ICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAK-EHGYP-FPY 93 (171)
T ss_pred HHHhCCCEEEEEE----ECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHH-HCCCC-ceE
Confidence 3433334455555 34699999865544444 257777777753 2 34555554 34544 553
Q ss_pred E
Q 020081 73 L 73 (331)
Q Consensus 73 i 73 (331)
+
T Consensus 94 l 94 (171)
T cd02969 94 L 94 (171)
T ss_pred E
Confidence 3
No 441
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=92.02 E-value=0.45 Score=37.11 Aligned_cols=59 Identities=24% Similarity=0.357 Sum_probs=36.7
Q ss_pred hCCCEEEEEecCCCCCCChhHHHHHHHHHh-------CCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEE
Q 020081 12 DSHPVMLFMKGTPEEPKCGFSRQVVDILKD-------EKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYC 75 (331)
Q Consensus 12 ~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi 75 (331)
....++|+...+ .|||+|....+.|.+ .++.+..+..+...++++.... .+ ..+|.+.-
T Consensus 24 ~gk~~vl~f~~~---~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~-~~-~~~~~~~D 89 (124)
T PF00578_consen 24 KGKPVVLFFWPT---AWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEE-YG-LPFPVLSD 89 (124)
T ss_dssp TTSEEEEEEEST---TTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHH-HT-CSSEEEEE
T ss_pred CCCcEEEEEeCc---cCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhh-hc-cccccccC
Confidence 444556655432 299999865544444 4778888888666666666663 33 56665554
No 442
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=91.97 E-value=0.27 Score=36.09 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=11.8
Q ss_pred cCCCCcceeeecC
Q 020081 187 SNWSSYPQLYIKG 199 (331)
Q Consensus 187 ~~~~~vP~ifi~G 199 (331)
.|+.++|+++++|
T Consensus 79 ~g~~g~Pt~v~~~ 91 (98)
T cd02972 79 LGVTGTPTFVVNG 91 (98)
T ss_pred cCCCCCCEEEECC
Confidence 3999999999998
No 443
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.94 E-value=0.61 Score=40.42 Aligned_cols=65 Identities=20% Similarity=0.282 Sum_probs=50.0
Q ss_pred CCCCcchHHHHHHHhhcCCccEEEEecCCH-HHHHHHHhhcCCCCcCEEEECCe-EEeeHHHHHHHH
Q 020081 256 SPRCGFSSKVVNALKEEGVNFGSFDILTDE-EVRQGLKVYSNWPTFPQLYHKGE-LIGGCDIVMELK 320 (331)
Q Consensus 256 ~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~-~~~~~l~~~~g~~~vP~ifi~g~-~igg~~~~~~~~ 320 (331)
.+.+|+|.++.-.|.++|++|+.+.|+... ....++....-...||++..+|- .+--...+.++.
T Consensus 6 ~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL 72 (211)
T COG0625 6 SPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYL 72 (211)
T ss_pred CCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHH
Confidence 357799999999999999999999987663 45566778788889999988764 455544444443
No 444
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=91.81 E-value=0.28 Score=41.87 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=53.4
Q ss_pred HHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC-----CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCE
Q 020081 4 KSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE-----KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGE 78 (331)
Q Consensus 4 ~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~ 78 (331)
++.|+...++.+||+-..- |.-..|+-|-..|+.+ +..|+.+|+...|=+...|. +.-.|++ .+|+||+
T Consensus 75 kdf~~~~~kS~kVVcHFY~----~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~-IkVLP~v-~l~k~g~ 148 (211)
T KOG1672|consen 75 KDFFEEVKKSEKVVCHFYR----PEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLN-IKVLPTV-ALFKNGK 148 (211)
T ss_pred HHHHHHhhcCceEEEEEEc----CCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeee-eeEeeeE-EEEEcCE
Confidence 3445555555565554322 2445677666666553 56799999999999888888 8889999 8999997
Q ss_pred Eee---chhhH
Q 020081 79 LLG---GCDIV 86 (331)
Q Consensus 79 ~vg---g~~~~ 86 (331)
.+. ||++|
T Consensus 149 ~~D~iVGF~dL 159 (211)
T KOG1672|consen 149 TVDYVVGFTDL 159 (211)
T ss_pred EEEEEeeHhhc
Confidence 654 66654
No 445
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=91.80 E-value=0.52 Score=38.25 Aligned_cols=46 Identities=20% Similarity=0.120 Sum_probs=29.0
Q ss_pred CCCChhHHHHHHHHHh-------CCCCeEEEEecCCHHHHHHHhhhhCCCcccEE
Q 020081 26 EPKCGFSRQVVDILKD-------EKVEFGSFNILSDNEVREGLKKFSNWPTFPQL 73 (331)
Q Consensus 26 ~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~i 73 (331)
+.||+.|.+..+.|.+ .++.+..+..+....++++.. -.+ .++|.+
T Consensus 38 ~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~-~~~-~~~~~~ 90 (149)
T cd03018 38 LAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAE-ENG-LTFPLL 90 (149)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHH-hcC-CCceEe
Confidence 4599999976555554 367777777765555555555 334 356543
No 446
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=91.78 E-value=0.47 Score=39.25 Aligned_cols=63 Identities=16% Similarity=0.174 Sum_probs=35.9
Q ss_pred CEEEEEecCCCCCCCcchHHH----HHHhhcC---CCCeEEE--ecCCC---------------------HHHHHHHHhh
Q 020081 137 PVMLFMKGKPEEPKCGFSGKV----VEILKQG---KVDFGSF--DILTD---------------------EEVRQGLKVY 186 (331)
Q Consensus 137 ~vvvf~~~~~~~~~C~~C~~~----~~~l~~~---~i~~~~~--di~~~---------------------~~~~~~l~~~ 186 (331)
+++.+.+|+ -|||+|+.. ++++++. +-+|+.+ +-+.+ ++..+.+.+.
T Consensus 34 KvV~lyFsA---~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~k 110 (157)
T KOG2501|consen 34 KVVGLYFSA---HWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEK 110 (157)
T ss_pred cEEEEEEEE---EECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHh
Confidence 666666664 479999854 5555442 2245544 22211 2334445556
Q ss_pred cCCCCcceeee---cCccc
Q 020081 187 SNWSSYPQLYI---KGELI 202 (331)
Q Consensus 187 ~~~~~vP~ifi---~G~~v 202 (331)
|++.++|.+.+ +|..|
T Consensus 111 y~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 111 YEVKGIPALVILKPDGTVV 129 (157)
T ss_pred cccCcCceeEEecCCCCEe
Confidence 78889998844 46554
No 447
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=91.78 E-value=0.44 Score=39.18 Aligned_cols=49 Identities=14% Similarity=0.306 Sum_probs=27.6
Q ss_pred CCCCCcchHHHHHHhhc-------CCCCeEEEecC-------CC-HHHHHHHHhhcCCCCcceee
Q 020081 147 EEPKCGFSGKVVEILKQ-------GKVDFGSFDIL-------TD-EEVRQGLKVYSNWSSYPQLY 196 (331)
Q Consensus 147 ~~~~C~~C~~~~~~l~~-------~~i~~~~~di~-------~~-~~~~~~l~~~~~~~~vP~if 196 (331)
|++|||+|..-.+.|++ .++.+.-++.. .+ +.+++.+++..++ .+|.+.
T Consensus 30 ~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~-~fp~~~ 93 (153)
T TIGR02540 30 VASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGV-TFPMFS 93 (153)
T ss_pred eCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCC-CCCccc
Confidence 56899999765543332 36666666531 12 4455555442255 468664
No 448
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=91.72 E-value=0.44 Score=42.50 Aligned_cols=55 Identities=18% Similarity=0.296 Sum_probs=32.5
Q ss_pred CEEEEEecCCCCCCCcchHHHHHHhhc-------CCCCeEEEecC--------CCHHHHHHHHhhcCCCCccee
Q 020081 137 PVMLFMKGKPEEPKCGFSGKVVEILKQ-------GKVDFGSFDIL--------TDEEVRQGLKVYSNWSSYPQL 195 (331)
Q Consensus 137 ~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~~i~~~~~di~--------~~~~~~~~l~~~~~~~~vP~i 195 (331)
+++|..+ |+.||++|..-.+.|++ .++.+.-++++ ..+++++.+.+.+|. .+|.+
T Consensus 100 K~vvl~F---wAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~-~fPvl 169 (236)
T PLN02399 100 KVLLIVN---VASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKA-EFPIF 169 (236)
T ss_pred CeEEEEE---EcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCC-CCccc
Confidence 5666666 66899999765544433 46666666642 125666665333354 36753
No 449
>PLN02395 glutathione S-transferase
Probab=91.56 E-value=0.92 Score=39.31 Aligned_cols=70 Identities=13% Similarity=0.140 Sum_probs=52.2
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCC--HHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHHH
Q 020081 246 VMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTD--EEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKD 321 (331)
Q Consensus 246 v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~--~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~~ 321 (331)
+.+|. .+.| .+.+++-+|.+.|++|+.+.++.. .....++.+..-...||++..+|..+.....+.++..
T Consensus 3 ~~ly~-----~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~ 74 (215)
T PLN02395 3 LKVYG-----PAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYA 74 (215)
T ss_pred EEEEc-----CCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 57787 3454 479999999999999999887642 1223456777777899999999888887777666655
No 450
>PRK10357 putative glutathione S-transferase; Provisional
Probab=91.52 E-value=0.62 Score=39.99 Aligned_cols=62 Identities=26% Similarity=0.333 Sum_probs=44.6
Q ss_pred CCCCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEE-CCeEEeeHHHHHH
Q 020081 256 SPRCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYH-KGELIGGCDIVME 318 (331)
Q Consensus 256 ~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi-~g~~igg~~~~~~ 318 (331)
.+.||++.+++-+|+..|++|+.++++.... ..++.+.+....+|++.. ||..+-....+..
T Consensus 6 ~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~-~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~ 68 (202)
T PRK10357 6 SYTSPFVRKISILLLEKGITFEFVNELPYNA-DNGVAQYNPLGKVPALVTEEGECWFDSPIIAE 68 (202)
T ss_pred CCCCchHHHHHHHHHHcCCCCeEEecCCCCC-chhhhhcCCccCCCeEEeCCCCeeecHHHHHH
Confidence 4689999999999999999999988764211 123445677789999985 5665554444444
No 451
>PRK15113 glutathione S-transferase; Provisional
Probab=91.18 E-value=1 Score=39.22 Aligned_cols=64 Identities=13% Similarity=0.129 Sum_probs=46.6
Q ss_pred CEEEEEecCCCCCCChhHHHHHHHHHhCCCCeEEEEecCC--HHHHHHHhhhhCCCcccEEEECCEEee
Q 020081 15 PVMLFMKGTPEEPKCGFSRQVVDILKDEKVEFGSFNILSD--NEVREGLKKFSNWPTFPQLYCKGELLG 81 (331)
Q Consensus 15 ~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~--~~~~~~~~~~~~~~t~P~ifi~g~~vg 81 (331)
.+.+|.... +.|++|.++.-+|.++|++|..+.++-. ......+.+++-...||++..||..+-
T Consensus 5 ~~~Ly~~~~---~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ 70 (214)
T PRK15113 5 AITLYSDAH---FFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELS 70 (214)
T ss_pred eEEEEeCCC---CCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEe
Confidence 456776421 2599999999999999999888777532 223345656888889999988886554
No 452
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=90.89 E-value=1.5 Score=34.54 Aligned_cols=92 Identities=13% Similarity=0.291 Sum_probs=48.6
Q ss_pred HHHHHHHhhCCC-EEEEEecCCCCCCChhHHH------HHHHHHhCCCCeEEEEecCC--HHHHHHHhhhhCCCcccEEE
Q 020081 4 KSRLQQLLDSHP-VMLFMKGTPEEPKCGFSRQ------VVDILKDEKVEFGSFNILSD--NEVREGLKKFSNWPTFPQLY 74 (331)
Q Consensus 4 ~~~~~~~i~~~~-vvvf~~~~~~~~~C~~C~~------~~~~l~~~~i~~~~vdi~~~--~~~~~~~~~~~~~~t~P~if 74 (331)
++.++..-++.+ ++||.-+.....||.+|+. +.+++.+ +.-+...|+... .+++..++ +++.|++ ++
T Consensus 7 ~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~-~fv~w~~dv~~~eg~~la~~l~-~~~~P~~--~~ 82 (116)
T cd02991 7 SQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT-RMLFWACSVAKPEGYRVSQALR-ERTYPFL--AM 82 (116)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc-CEEEEEEecCChHHHHHHHHhC-CCCCCEE--EE
Confidence 445555556655 5555544333458999974 3445543 333445566544 45566666 6666665 33
Q ss_pred E---CCE--EeechhhHHhhhcccchHHHHHhc
Q 020081 75 C---KGE--LLGGCDIVIAMHKSGELKDVFRDH 102 (331)
Q Consensus 75 i---~g~--~vgg~~~~~~~~~~~~l~~~l~~~ 102 (331)
+ +++ .+....|... ..+|...|+..
T Consensus 83 l~~~~~~~~vv~~i~G~~~---~~~ll~~L~~~ 112 (116)
T cd02991 83 IMLKDNRMTIVGRLEGLIQ---PEDLINRLTFI 112 (116)
T ss_pred EEecCCceEEEEEEeCCCC---HHHHHHHHHHH
Confidence 3 433 3554444333 45565555543
No 453
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=90.65 E-value=0.4 Score=40.07 Aligned_cols=74 Identities=14% Similarity=0.245 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHH-HhhcCCC------CeE--EEecCCCHHHHHHH----HhhcCCCCc
Q 020081 126 TSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVE-ILKQGKV------DFG--SFDILTDEEVRQGL----KVYSNWSSY 192 (331)
Q Consensus 126 ~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~-~l~~~~i------~~~--~~di~~~~~~~~~l----~~~~~~~~v 192 (331)
.+.++..-+.++.++++.+. .||++|+.|.+ .|+...| .|. .+|.++.|++.... +..+|..++
T Consensus 27 ~ea~~~Ak~e~KpIfl~ig~---~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGw 103 (163)
T PF03190_consen 27 EEALEKAKKENKPIFLSIGY---SWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGW 103 (163)
T ss_dssp HHHHHHHHHHT--EEEEEE----TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---S
T ss_pred HHHHHHHHhcCCcEEEEEEe---cCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCC
Confidence 44566666666665555442 68999987753 5544222 344 45777767664443 345588899
Q ss_pred cee-ee--cCccc
Q 020081 193 PQL-YI--KGELI 202 (331)
Q Consensus 193 P~i-fi--~G~~v 202 (331)
|+. |. +|+.+
T Consensus 104 Pl~vfltPdg~p~ 116 (163)
T PF03190_consen 104 PLTVFLTPDGKPF 116 (163)
T ss_dssp SEEEEE-TTS-EE
T ss_pred CceEEECCCCCee
Confidence 988 44 46655
No 454
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=90.61 E-value=0.95 Score=32.37 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=43.7
Q ss_pred CcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHHHc
Q 020081 259 CGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKDN 322 (331)
Q Consensus 259 Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~~~ 322 (331)
+|+|-++..+|+-.+++|+.+.. .++ ..+-...+|.|..+|+.|++++.+.++.++
T Consensus 16 sp~clk~~~~Lr~~~~~~~v~~~-~n~-------~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~ 71 (73)
T cd03078 16 DPECLAVLAYLKFAGAPLKVVPS-NNP-------WRSPTGKLPALLTSGTKISGPEKIIEYLRK 71 (73)
T ss_pred CHHHHHHHHHHHcCCCCEEEEec-CCC-------CCCCCCccCEEEECCEEecChHHHHHHHHH
Confidence 79999999999999999976633 221 112344699999999999999998887653
No 455
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=90.60 E-value=2.5 Score=30.17 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=43.6
Q ss_pred cchHHHHHHHhhcCCccEEEEecC--CHHHHHHHHhhcCC-CCcCEEEEC-CeEEeeHHHHHHH
Q 020081 260 GFSSKVVNALKEEGVNFGSFDILT--DEEVRQGLKVYSNW-PTFPQLYHK-GELIGGCDIVMEL 319 (331)
Q Consensus 260 p~C~~a~~~l~~~~v~~~~~dv~~--~~~~~~~l~~~~g~-~~vP~ifi~-g~~igg~~~~~~~ 319 (331)
+.|..++-+|+..|++|+.+.++. .....+++.+..-. ..+|.+.++ |..+-.-..+..+
T Consensus 10 ~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~Y 73 (76)
T PF02798_consen 10 GRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRY 73 (76)
T ss_dssp TTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHH
T ss_pred CchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHH
Confidence 388899999999999999998764 33333566666666 899999999 8888766655544
No 456
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=90.38 E-value=0.37 Score=41.84 Aligned_cols=64 Identities=19% Similarity=0.167 Sum_probs=33.9
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHhhcCCc----cEEEEec-----------CC---HHHHHHHHhhcC--CCCcCEEEE
Q 020081 246 VMLFMKGNPDSPRCGFSSKVVNALKEEGVN----FGSFDIL-----------TD---EEVRQGLKVYSN--WPTFPQLYH 305 (331)
Q Consensus 246 v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~----~~~~dv~-----------~~---~~~~~~l~~~~g--~~~vP~ifi 305 (331)
|.+|+. .+|.-|.-|-++|.++.-. .-.+.|+ .. ...+....+..| .-..||++|
T Consensus 2 VELFTS-----QGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV 76 (202)
T PF06764_consen 2 VELFTS-----QGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV 76 (202)
T ss_dssp EEEEE------TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE
T ss_pred eeEecC-----CCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE
Confidence 678994 4899999999998665422 1111221 11 223333444443 334799999
Q ss_pred CCe-EEeeHH
Q 020081 306 KGE-LIGGCD 314 (331)
Q Consensus 306 ~g~-~igg~~ 314 (331)
||+ +.+|++
T Consensus 77 nG~~~~~g~~ 86 (202)
T PF06764_consen 77 NGREHRVGSD 86 (202)
T ss_dssp TTTEEEETT-
T ss_pred CCeeeeeccC
Confidence 995 666765
No 457
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=90.19 E-value=1.1 Score=38.75 Aligned_cols=61 Identities=21% Similarity=0.267 Sum_probs=48.5
Q ss_pred CCcchHHHHHHHhhcCCccEEE--EecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHHH
Q 020081 258 RCGFSSKVVNALKEEGVNFGSF--DILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELKD 321 (331)
Q Consensus 258 ~Cp~C~~a~~~l~~~~v~~~~~--dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~~ 321 (331)
.||+|++.-..|..+++.|... |+..-++ ++...+....+|.+-.|++.+-..+.+.+..+
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~---~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Le 82 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPE---WFLDISPGGKPPVLKFDEKWVTDSDKIEEFLE 82 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCcH---HHHhhCCCCCCCeEEeCCceeccHHHHHHHHH
Confidence 4999999999999999987554 5544454 36677888899999999998888877766544
No 458
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=90.13 E-value=2.6 Score=30.67 Aligned_cols=62 Identities=8% Similarity=0.095 Sum_probs=41.7
Q ss_pred CcchHHHHHHHhhcCCccEEEEecCCH-------HHHHHHHh-hcCCCCcCEEEECCeEEeeHHHHHHHH
Q 020081 259 CGFSSKVVNALKEEGVNFGSFDILTDE-------EVRQGLKV-YSNWPTFPQLYHKGELIGGCDIVMELK 320 (331)
Q Consensus 259 Cp~C~~a~~~l~~~~v~~~~~dv~~~~-------~~~~~l~~-~~g~~~vP~ifi~g~~igg~~~~~~~~ 320 (331)
-+.|.+++-+|...|++|+.+.++... +......+ ..-...||++..||..+.-..-++.+.
T Consensus 9 ~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YL 78 (82)
T cd03075 9 RGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYI 78 (82)
T ss_pred ccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHH
Confidence 367889999999999999988886321 11111111 114568999999998877655555544
No 459
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=89.74 E-value=1.1 Score=38.76 Aligned_cols=42 Identities=12% Similarity=0.036 Sum_probs=27.7
Q ss_pred CCEEEEEecCCCCCCChhHHHHHHH-------HHhCCCCeEEEEecCCHHHH
Q 020081 14 HPVMLFMKGTPEEPKCGFSRQVVDI-------LKDEKVEFGSFNILSDNEVR 58 (331)
Q Consensus 14 ~~vvvf~~~~~~~~~C~~C~~~~~~-------l~~~~i~~~~vdi~~~~~~~ 58 (331)
..+++|++ |+.|||.|..-..- |++.|+.+.-+.++......
T Consensus 26 k~vvlf~~---pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~ 74 (203)
T cd03016 26 SWGILFSH---PADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHI 74 (203)
T ss_pred CEEEEEEe---cCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHH
Confidence 34666654 67899999975443 44458888888877654433
No 460
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=89.69 E-value=1.4 Score=35.02 Aligned_cols=62 Identities=24% Similarity=0.351 Sum_probs=40.4
Q ss_pred HHHHHHHhCCCCeEEEEecCC-------HHHHHHHhhhhCCCcccEEEECCEEe--echhhHHhhhcccchHHHHHhc
Q 020081 34 QVVDILKDEKVEFGSFNILSD-------NEVREGLKKFSNWPTFPQLYCKGELL--GGCDIVIAMHKSGELKDVFRDH 102 (331)
Q Consensus 34 ~~~~~l~~~~i~~~~vdi~~~-------~~~~~~~~~~~~~~t~P~ifi~g~~v--gg~~~~~~~~~~~~l~~~l~~~ 102 (331)
.+...|++.|++...+|+..+ +.+.+.+. ..|.-.+|.+++||+.+ |.|-. ..+|.+++.-.
T Consensus 31 ~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~-~~G~e~LPitlVdGeiv~~G~YPt------~eEl~~~~~i~ 101 (123)
T PF06953_consen 31 ADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQ-TEGAEALPITLVDGEIVKTGRYPT------NEELAEWLGIS 101 (123)
T ss_dssp HHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHH-HH-GGG-SEEEETTEEEEESS---------HHHHHHHHT--
T ss_pred HHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHH-HcCcccCCEEEECCEEEEecCCCC------HHHHHHHhCCC
Confidence 345667778999999999765 56777777 67999999999999987 45542 45566665433
No 461
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.54 E-value=0.36 Score=41.94 Aligned_cols=76 Identities=16% Similarity=0.172 Sum_probs=51.8
Q ss_pred HHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC-------CCCeEEEEecCCHHHHHHHhhhh------CCCcccE
Q 020081 6 RLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE-------KVEFGSFNILSDNEVREGLKKFS------NWPTFPQ 72 (331)
Q Consensus 6 ~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-------~i~~~~vdi~~~~~~~~~~~~~~------~~~t~P~ 72 (331)
.+++...+++-+.+.- .+.+-|.|.|.+..+++.++ +++|-.+|+.--++.+..++ ++ -.||+ .
T Consensus 134 ~~deel~rnk~t~WlI-eFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfr-is~s~~srQLPT~-i 210 (265)
T KOG0914|consen 134 LEDEELDRNKRTYWLI-EFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFR-ISLSPGSRQLPTY-I 210 (265)
T ss_pred hHHHHhccCCceEEEE-EEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHhee-eccCcccccCCeE-E
Confidence 3455566665222210 11233999999999988886 46789999988888888887 64 35666 7
Q ss_pred EEECCEEeechh
Q 020081 73 LYCKGELLGGCD 84 (331)
Q Consensus 73 ifi~g~~vgg~~ 84 (331)
+|.+|+.+...-
T Consensus 211 lFq~gkE~~RrP 222 (265)
T KOG0914|consen 211 LFQKGKEVSRRP 222 (265)
T ss_pred EEccchhhhcCc
Confidence 788998775443
No 462
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=89.25 E-value=0.6 Score=35.30 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=20.9
Q ss_pred HHHHHHHHhhCCCEEEEEecCCCCCCChhHHHHHHHHHhC
Q 020081 3 LKSRLQQLLDSHPVMLFMKGTPEEPKCGFSRQVVDILKDE 42 (331)
Q Consensus 3 ~~~~~~~~i~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~~ 42 (331)
+++.|.++-++..+++|... . ++|..++.+|++.
T Consensus 10 L~~~f~~l~~pV~l~~f~~~-----~-~~~~e~~~ll~e~ 43 (94)
T cd02974 10 LKAYLERLENPVELVASLDD-----S-EKSAELLELLEEI 43 (94)
T ss_pred HHHHHHhCCCCEEEEEEeCC-----C-cchHHHHHHHHHH
Confidence 44455544443344445432 3 8999999999885
No 463
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=89.24 E-value=0.99 Score=36.01 Aligned_cols=57 Identities=16% Similarity=0.073 Sum_probs=33.8
Q ss_pred CCCEEEEEecCCCCCCChhHHHHHHHHHh-------CCCCeEEEEecCCHHHHHHHhhhhCCCcccEE
Q 020081 13 SHPVMLFMKGTPEEPKCGFSRQVVDILKD-------EKVEFGSFNILSDNEVREGLKKFSNWPTFPQL 73 (331)
Q Consensus 13 ~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~i 73 (331)
...++|+... ..||++|....+.|.+ .++.+..+..+....++.... -.+..++|.+
T Consensus 22 gk~~ll~f~~---~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~-~~~~~~~~~l 85 (140)
T cd02971 22 GKWVVLFFYP---KDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAE-KEGGLNFPLL 85 (140)
T ss_pred CCeEEEEEeC---CCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHh-cccCCCceEE
Confidence 3445555431 2399999976555444 467888888765455555554 3334567644
No 464
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=89.10 E-value=0.083 Score=46.28 Aligned_cols=74 Identities=16% Similarity=0.250 Sum_probs=55.0
Q ss_pred ccchhHHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhhc-------CCCCeEEEecCCCHHHHHHHHhhcCCCCc
Q 020081 120 GLSATLTSRLESLINSSPVMLFMKGKPEEPKCGFSGKVVEILKQ-------GKVDFGSFDILTDEEVRQGLKVYSNWSSY 192 (331)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~~i~~~~~di~~~~~~~~~l~~~~~~~~v 192 (331)
.......+...+++...=++.|.- ||||.|...+..|+. ++|+..++|+..++-+. -++ -+...
T Consensus 25 ~~~~~~eenw~~~l~gewmi~~~a-----p~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLs---GRF-~vtaL 95 (248)
T KOG0913|consen 25 KLTRIDEENWKELLTGEWMIEFGA-----PWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLS---GRF-LVTAL 95 (248)
T ss_pred eeEEecccchhhhhchHHHHHhcC-----CCCccccchHHHHhccCCccCCCceeEEEEEEEeccccc---eee-EEEec
Confidence 444445566777777766666654 699999999998876 57788999999998877 333 67889
Q ss_pred cee--eecCccc
Q 020081 193 PQL--YIKGELI 202 (331)
Q Consensus 193 P~i--fi~G~~v 202 (331)
|+| ..+|+|-
T Consensus 96 ptIYHvkDGeFr 107 (248)
T KOG0913|consen 96 PTIYHVKDGEFR 107 (248)
T ss_pred ceEEEeeccccc
Confidence 999 5577654
No 465
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=89.04 E-value=0.49 Score=46.77 Aligned_cols=73 Identities=15% Similarity=0.282 Sum_probs=46.9
Q ss_pred HHHHHHhhCCC---EEEEEecCCCCCCChhHHHHHHHHHhC--------C-CCeEEEEe--cCCHHHHHHHhhhhCCCcc
Q 020081 5 SRLQQLLDSHP---VMLFMKGTPEEPKCGFSRQVVDILKDE--------K-VEFGSFNI--LSDNEVREGLKKFSNWPTF 70 (331)
Q Consensus 5 ~~~~~~i~~~~---vvvf~~~~~~~~~C~~C~~~~~~l~~~--------~-i~~~~vdi--~~~~~~~~~~~~~~~~~t~ 70 (331)
+.|+..+...+ +|=|. +.|||+|++.++.++.. . +....||. +.+..+-+.+. |++.||+
T Consensus 47 ~tf~~~v~~~~~~~lVEFy-----~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~-V~~~Ptl 120 (606)
T KOG1731|consen 47 DTFNAAVFGSRKAKLVEFY-----NSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFS-VSGYPTL 120 (606)
T ss_pred hhhHHHhcccchhHHHHHH-----HhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcC-CCCCcee
Confidence 34555554433 33333 34999999999988884 2 34667776 34567778887 8888886
Q ss_pred cEEEE----C---CEEeechh
Q 020081 71 PQLYC----K---GELLGGCD 84 (331)
Q Consensus 71 P~ifi----~---g~~vgg~~ 84 (331)
..|- + |+.+.|..
T Consensus 121 -ryf~~~~~~~~~G~~~~~~~ 140 (606)
T KOG1731|consen 121 -RYFPPDSQNKTDGSDVSGPV 140 (606)
T ss_pred -eecCCccccCcCCCcccCCc
Confidence 4443 3 56666643
No 466
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=88.91 E-value=1.2 Score=35.80 Aligned_cols=61 Identities=3% Similarity=-0.102 Sum_probs=32.8
Q ss_pred HHHHhcCCCEEEEEecCCCCCC-CcchHHHHHHhhc-----CCCCeEEEecCCCHHHHHHHHhhcCCCCccee
Q 020081 129 LESLINSSPVMLFMKGKPEEPK-CGFSGKVVEILKQ-----GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL 195 (331)
Q Consensus 129 ~~~~~~~~~vvvf~~~~~~~~~-C~~C~~~~~~l~~-----~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i 195 (331)
++++. ...++|+.+ +.| |++|+.-.+.|++ .++.+..++++.....+++. +..+...+|.+
T Consensus 21 l~~~~-gk~vvl~f~----~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~-~~~~~~~~~~l 87 (143)
T cd03014 21 LADFA-GKVKVISVF----PSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWC-GAEGVDNVTTL 87 (143)
T ss_pred HHHhC-CCeEEEEEE----cCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHH-HhcCCCCceEe
Confidence 44543 334444443 235 7999876655543 36666777765434444444 33365556643
No 467
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=88.83 E-value=3.1 Score=29.96 Aligned_cols=58 Identities=22% Similarity=0.191 Sum_probs=38.8
Q ss_pred CChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhh--hhCCCcccEEEECCEEeechhhH
Q 020081 28 KCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKK--FSNWPTFPQLYCKGELLGGCDIV 86 (331)
Q Consensus 28 ~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~--~~~~~t~P~ifi~g~~vgg~~~~ 86 (331)
.++.|.+++-+|.+.|++|..+.++..++..+ .+. .....++|.+..||..+....-+
T Consensus 9 ~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~-~~~~~~~~~g~vP~L~~~g~~l~ES~AI 68 (79)
T cd03077 9 GRGRMESIRWLLAAAGVEFEEKFIESAEDLEK-LKKDGSLMFQQVPMVEIDGMKLVQTRAI 68 (79)
T ss_pred CCChHHHHHHHHHHcCCCcEEEEeccHHHHHh-hccccCCCCCCCCEEEECCEEEeeHHHH
Confidence 57789999999999999998887754322111 110 11256899998888776554433
No 468
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.74 E-value=0.44 Score=40.14 Aligned_cols=64 Identities=16% Similarity=0.321 Sum_probs=47.0
Q ss_pred CCEEEEEecCCCCCCCcchHHHHHHhhcCCCCeEEEecCCC-HHHHHHHHhhcCCCCcceeeecCccc
Q 020081 136 SPVMLFMKGKPEEPKCGFSGKVVEILKQGKVDFGSFDILTD-EEVRQGLKVYSNWSSYPQLYIKGELI 202 (331)
Q Consensus 136 ~~vvvf~~~~~~~~~C~~C~~~~~~l~~~~i~~~~~di~~~-~~~~~~l~~~~~~~~vP~ifi~G~~v 202 (331)
.+.+||+. |...|.+=.++.-.|+..+-+|..+|+.+. ...-..+++...-..||++.+||.-+
T Consensus 4 ~KpiLYSY---WrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl 68 (217)
T KOG0868|consen 4 AKPILYSY---WRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTL 68 (217)
T ss_pred ccchhhhh---hcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEe
Confidence 46778887 767787777777666666666667787765 44445667777888999999999776
No 469
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=88.73 E-value=2.5 Score=36.65 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=41.1
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCC--HHHHHHHHhhcCCCCcCEEEE
Q 020081 246 VMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTD--EEVRQGLKVYSNWPTFPQLYH 305 (331)
Q Consensus 246 v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~--~~~~~~l~~~~g~~~vP~ifi 305 (331)
+.+|. .+ +|+|.+++-+|+++|++|+.++++.. .....++.+..-...||++..
T Consensus 2 ~~Ly~-----~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~ 57 (215)
T PRK13972 2 IDLYF-----AP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVD 57 (215)
T ss_pred eEEEE-----CC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEe
Confidence 45776 23 58899999999999999999887542 223355777777789999987
No 470
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=88.68 E-value=2.4 Score=31.45 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=27.5
Q ss_pred CCccEEEEecCCHH--HHHHHHhh-c-CCCCcCEEEECCeEEe-eHHHHHHH
Q 020081 273 GVNFGSFDILTDEE--VRQGLKVY-S-NWPTFPQLYHKGELIG-GCDIVMEL 319 (331)
Q Consensus 273 ~v~~~~~dv~~~~~--~~~~l~~~-~-g~~~vP~ifi~g~~ig-g~~~~~~~ 319 (331)
...|+.+||...++ ..+.+.++ - .---+|.|.+||+.|| |.-.|+..
T Consensus 37 ~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~EGnp~LK~I 88 (93)
T PF07315_consen 37 PFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAEGNPQLKDI 88 (93)
T ss_dssp -EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEESS--HHHH
T ss_pred ceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEecCCccHHHH
Confidence 45688899865322 22333332 2 5567999999999999 66655543
No 471
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=88.28 E-value=0.88 Score=35.44 Aligned_cols=62 Identities=27% Similarity=0.393 Sum_probs=37.3
Q ss_pred HHHHhcCCCEEEEEecCCCCCCCcchHHHHHHhh-------cCCCCeEEEecCCCHHHHHHHHhhcCCCCcceee
Q 020081 129 LESLINSSPVMLFMKGKPEEPKCGFSGKVVEILK-------QGKVDFGSFDILTDEEVRQGLKVYSNWSSYPQLY 196 (331)
Q Consensus 129 ~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l~-------~~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~if 196 (331)
++++ ....++|+.+++ .||++|......|+ +.++.+..+..+...+..+.+++. + ..+|.+.
T Consensus 20 l~~l-~gk~~vl~f~~~---~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~-~-~~~~~~~ 88 (124)
T PF00578_consen 20 LSDL-KGKPVVLFFWPT---AWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEY-G-LPFPVLS 88 (124)
T ss_dssp GGGG-TTSEEEEEEEST---TTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHH-T-CSSEEEE
T ss_pred HHHH-CCCcEEEEEeCc---cCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhh-c-ccccccc
Confidence 4555 445555555532 38999975554443 357777778876656666666655 5 3445544
No 472
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=88.25 E-value=1.4 Score=35.13 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=35.8
Q ss_pred HHHHHhhcCCCCeEEEecCCC-------HHHHHHHHhhcCCCCcceeeecCccc
Q 020081 156 KVVEILKQGKVDFGSFDILTD-------EEVRQGLKVYSNWSSYPQLYIKGELI 202 (331)
Q Consensus 156 ~~~~~l~~~~i~~~~~di~~~-------~~~~~~l~~~~~~~~vP~ifi~G~~v 202 (331)
.+.++|++.++....+|+..+ +.+.+.|+.. |...+|.+++||+.+
T Consensus 31 ~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~-G~e~LPitlVdGeiv 83 (123)
T PF06953_consen 31 ADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTE-GAEALPITLVDGEIV 83 (123)
T ss_dssp HHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH--GGG-SEEEETTEEE
T ss_pred HHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHc-CcccCCEEEECCEEE
Confidence 556778889999999998764 6778888777 999999999999887
No 473
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=87.63 E-value=1.3 Score=41.26 Aligned_cols=259 Identities=14% Similarity=0.160 Sum_probs=127.9
Q ss_pred HHHHHHhhCCCEEEEEecCCCCCCChhHH-----------HHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEE
Q 020081 5 SRLQQLLDSHPVMLFMKGTPEEPKCGFSR-----------QVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQL 73 (331)
Q Consensus 5 ~~~~~~i~~~~vvvf~~~~~~~~~C~~C~-----------~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~i 73 (331)
..++++++++.+++..+..|- +.-...+ -+.++|+..+|.|..||..++..+++.++ +....++ .|
T Consensus 42 KNfk~~lKkyd~l~l~yh~p~-~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLg-v~E~~Si-yV 118 (383)
T PF01216_consen 42 KNFKRALKKYDVLVLYYHEPV-ESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLG-VEEEGSI-YV 118 (383)
T ss_dssp TTHHHHHHH-SEEEEEEE--S-TSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT---STTEE-EE
T ss_pred hHHHHHHHhhcEEEEEEecCC-ccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcC-ccccCcE-EE
Confidence 467888888885554443321 1122221 24456667899999999999999999999 8889999 99
Q ss_pred EECCEEeechhhHHhhhcccchHHHHHhcCcccccCCCCCCCCCCcccc-hhHHHHHHHHhcCCCEEEEEecCCCCCCCc
Q 020081 74 YCKGELLGGCDIVIAMHKSGELKDVFRDHGIETVGGSGKSGISESTGLS-ATLTSRLESLINSSPVMLFMKGKPEEPKCG 152 (331)
Q Consensus 74 fi~g~~vgg~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vvvf~~~~~~~~~C~ 152 (331)
|.+|+.| -|+|.++ ...|+++|-..--+++ ..+. ..-.+.+..+-...+++-|-++ ....
T Consensus 119 fkd~~~I-EydG~~s---aDtLVeFl~dl~edPV-----------eiIn~~~e~~~Fe~ied~~klIGyFk~----~~s~ 179 (383)
T PF01216_consen 119 FKDGEVI-EYDGERS---ADTLVEFLLDLLEDPV-----------EIINNKHELKAFERIEDDIKLIGYFKS----EDSE 179 (383)
T ss_dssp EETTEEE-EE-S--S---HHHHHHHHHHHHSSSE-----------EEE-SHHHHHHHHH--SS-EEEEE-SS----TTSH
T ss_pred EECCcEE-EecCccC---HHHHHHHHHHhcccch-----------hhhcChhhhhhhhhcccceeEEEEeCC----CCcH
Confidence 9999988 3555544 4778888877732222 1111 2222335555556677777664 1233
Q ss_pred chHHHHHHhhcC--CCC-eEEEecCCCHHHHHHHHhhcCCCCccee-----eecCccccchhhHHHHhhcchhHHHHhhh
Q 020081 153 FSGKVVEILKQG--KVD-FGSFDILTDEEVRQGLKVYSNWSSYPQL-----YIKGELIGGSDIVLEMQKSGELKKVLAEK 224 (331)
Q Consensus 153 ~C~~~~~~l~~~--~i~-~~~~di~~~~~~~~~l~~~~~~~~vP~i-----fi~G~~vgg~d~~~~~~~~g~L~~~l~~~ 224 (331)
+=+.....-... -|+ |.++ ++.++..| +-+ +-.+ |.+ +.+-- -.+.+.+.+|.+.+++.
T Consensus 180 ~yk~FeeAAe~F~p~IkFfAtf----d~~vAk~L----~lK-~nev~fyepF~~-~pi~i---p~~p~~e~e~~~fi~~h 246 (383)
T PF01216_consen 180 HYKEFEEAAEHFQPYIKFFATF----DKKVAKKL----GLK-LNEVDFYEPFMD-EPITI---PGKPYTEEELVEFIEEH 246 (383)
T ss_dssp HHHHHHHHHHHCTTTSEEEEE-----SHHHHHHH----T-S-TT-EEEE-TTSS-SEEEE---SSSS--HHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCceeEEEEe----cchhhhhc----Ccc-ccceeeeccccC-CCccC---CCCCCCHHHHHHHHHHh
Confidence 333333333322 233 3333 45566444 332 2222 111 11100 00123666777777765
Q ss_pred ccch----hhhhHHHHHHHHhhcCCEEEEecCCCCCCCCcchHHHHHHHhhc--------CCccEEEEecCCHHHHHHHH
Q 020081 225 GITV----EKENLEDRLKNLITSSPVMLFMKGNPDSPRCGFSSKVVNALKEE--------GVNFGSFDILTDEEVRQGLK 292 (331)
Q Consensus 225 ~~~~----~~~~~~~~~~~~~~~~~v~vy~k~~p~~~~Cp~C~~a~~~l~~~--------~v~~~~~dv~~~~~~~~~l~ 292 (331)
.-++ +++++-+--..-+.+.-|+-|.. ..=|.-...-.+|++. ...+--||=+.-|-+...-.
T Consensus 247 ~rptlrkl~~~~m~e~Wedd~~g~hIvaFae-----e~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE 321 (383)
T PF01216_consen 247 KRPTLRKLRPEDMFETWEDDIDGIHIVAFAE-----EEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWE 321 (383)
T ss_dssp -S-SEEE--GGGHHHHHHSSSSSEEEEEE-------TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHH
T ss_pred chhHhhhCChhhhhhhhcccCCCceEEEEec-----CCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHH
Confidence 5432 35555444455556777888984 4666776666666432 22333444344455444444
Q ss_pred hhcCCC-CcCEE
Q 020081 293 VYSNWP-TFPQL 303 (331)
Q Consensus 293 ~~~g~~-~vP~i 303 (331)
+..|.. .-|||
T Consensus 322 ~tF~Idl~~PqI 333 (383)
T PF01216_consen 322 KTFGIDLSRPQI 333 (383)
T ss_dssp HHHTT-TTS-EE
T ss_pred hhcCccccCCce
Confidence 333321 23888
No 474
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=87.62 E-value=3.6 Score=30.58 Aligned_cols=55 Identities=20% Similarity=0.244 Sum_probs=33.5
Q ss_pred CCCcch------HHHHHHhhc--------CCCCeEEEecCCC---HHHHHHHHhhc-CCCCcceeeecCcccc
Q 020081 149 PKCGFS------GKVVEILKQ--------GKVDFGSFDILTD---EEVRQGLKVYS-NWSSYPQLYIKGELIG 203 (331)
Q Consensus 149 ~~C~~C------~~~~~~l~~--------~~i~~~~~di~~~---~~~~~~l~~~~-~~~~vP~ifi~G~~vg 203 (331)
.-|+.| +.+..+|+. ..+.|..+|+... ++-+++..+.- .---.|.+.+||+.||
T Consensus 7 ~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~ 79 (93)
T PF07315_consen 7 VICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVA 79 (93)
T ss_dssp S--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEE
T ss_pred ccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEe
Confidence 468888 466666653 4667889999864 22334444433 3445799999999996
No 475
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.40 E-value=1.9 Score=36.42 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=41.3
Q ss_pred hHHHHHHHhhcCCccEEEEec--CC-HHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHH
Q 020081 262 SSKVVNALKEEGVNFGSFDIL--TD-EEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMEL 319 (331)
Q Consensus 262 C~~a~~~l~~~~v~~~~~dv~--~~-~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~ 319 (331)
.+|++-.|.-+|++|+.+.|+ .+ .+.-.++++..-...||.+.|||..+----.+.++
T Consensus 17 swRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~Y 77 (217)
T KOG0868|consen 17 SWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEY 77 (217)
T ss_pred hHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHH
Confidence 456666788888888777654 33 44555788888888999999999887754444333
No 476
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=87.33 E-value=1.3 Score=38.20 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=42.8
Q ss_pred CChhHHHHHHHHHhCCCCeEEEEecC--C-HHHHHHHhhhhCCCcccEEEECCEEeechh
Q 020081 28 KCGFSRQVVDILKDEKVEFGSFNILS--D-NEVREGLKKFSNWPTFPQLYCKGELLGGCD 84 (331)
Q Consensus 28 ~C~~C~~~~~~l~~~~i~~~~vdi~~--~-~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~ 84 (331)
.|++|++++-+|..+|++|..+.++. . ......+.+++...++|.+..+|..+....
T Consensus 7 ~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~ 66 (210)
T TIGR01262 7 RSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSL 66 (210)
T ss_pred CCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHH
Confidence 69999999999999999998877652 1 112234555888889999998887665443
No 477
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=86.87 E-value=2.1 Score=34.13 Aligned_cols=55 Identities=15% Similarity=0.048 Sum_probs=33.0
Q ss_pred CCEEEEEecCCCCCCChhHHHHHHHHH-------hCCCCeEEEEecCCHHHHHHHhhhhCCCcccEE
Q 020081 14 HPVMLFMKGTPEEPKCGFSRQVVDILK-------DEKVEFGSFNILSDNEVREGLKKFSNWPTFPQL 73 (331)
Q Consensus 14 ~~vvvf~~~~~~~~~C~~C~~~~~~l~-------~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~i 73 (331)
..++|+... ..|||.|....+.|. ..++.+..+.++....++++..+ .+. ++|.+
T Consensus 24 k~~ll~f~~---~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~-~~~-~~~~l 85 (140)
T cd03017 24 KPVVLYFYP---KDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEK-YGL-PFPLL 85 (140)
T ss_pred CcEEEEEeC---CCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH-hCC-CceEE
Confidence 345555532 238999986544433 34788888877766666666653 343 56633
No 478
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=86.86 E-value=2.5 Score=37.91 Aligned_cols=70 Identities=23% Similarity=0.317 Sum_probs=54.2
Q ss_pred HHHhcCCCEEEEEecCCCCCCC----cchHHHHHHhhcCCCCeEEEecCCCHHHHHHHHhhcCCCCcceeeecCccccch
Q 020081 130 ESLINSSPVMLFMKGKPEEPKC----GFSGKVVEILKQGKVDFGSFDILTDEEVRQGLKVYSNWSSYPQLYIKGELIGGS 205 (331)
Q Consensus 130 ~~~~~~~~vvvf~~~~~~~~~C----~~C~~~~~~l~~~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~ifi~G~~vgg~ 205 (331)
+.-.+...|.||.+.. ...| |+|-++.-+|...+|+|+.++... +..|..-++|=|-.||+++.+.
T Consensus 38 k~d~kkD~VYLyQF~R--~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~--------~~rSr~G~lPFIELNGe~iaDS 107 (281)
T KOG4244|consen 38 KTDYKKDTVYLYQFPR--TKTCPNLSPFCLKVETFLRAYDIPYEIVDCSL--------KRRSRNGTLPFIELNGEHIADS 107 (281)
T ss_pred hhccccCeEEEEeccc--cCCCCCCChHHHHHHHHHHHhCCCceeccccc--------eeeccCCCcceEEeCCeecccc
Confidence 3455678888998853 4566 689999999999999999998542 1334667789999999999887
Q ss_pred hhHH
Q 020081 206 DIVL 209 (331)
Q Consensus 206 d~~~ 209 (331)
+.+.
T Consensus 108 ~~I~ 111 (281)
T KOG4244|consen 108 DLIE 111 (281)
T ss_pred HHHH
Confidence 7554
No 479
>PTZ00057 glutathione s-transferase; Provisional
Probab=86.80 E-value=4.8 Score=34.67 Aligned_cols=70 Identities=9% Similarity=0.148 Sum_probs=48.9
Q ss_pred CEEEEecCCCCCCCCcchHHHHHHHhhcCCccEEEEecCCHH-H--HHHHH--hhcCCCCcCEEEECCeEEeeHHHHHHH
Q 020081 245 PVMLFMKGNPDSPRCGFSSKVVNALKEEGVNFGSFDILTDEE-V--RQGLK--VYSNWPTFPQLYHKGELIGGCDIVMEL 319 (331)
Q Consensus 245 ~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~-~--~~~l~--~~~g~~~vP~ifi~g~~igg~~~~~~~ 319 (331)
++++|. .+..+.|.+++-+|+..|++|+.+.+....+ . .+++. ..+-...+|++.+||..+.-..-+..+
T Consensus 4 ~~~L~y-----~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~Y 78 (205)
T PTZ00057 4 EIVLYY-----FDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRY 78 (205)
T ss_pred ceEEEe-----cCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 367776 3457788899999999999999998854221 1 11122 245677899999999877766655554
No 480
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=86.75 E-value=4.3 Score=32.25 Aligned_cols=72 Identities=10% Similarity=0.056 Sum_probs=51.8
Q ss_pred HHHHHHHhhC--CCEEEEEecCCCCCCChhHHHHHHHHHhC-----C-CCeEEEEecCCHHHHHHHhhhhCCCcccEEEE
Q 020081 4 KSRLQQLLDS--HPVMLFMKGTPEEPKCGFSRQVVDILKDE-----K-VEFGSFNILSDNEVREGLKKFSNWPTFPQLYC 75 (331)
Q Consensus 4 ~~~~~~~i~~--~~vvvf~~~~~~~~~C~~C~~~~~~l~~~-----~-i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi 75 (331)
...+++.|.. .++||.-++. .|=|-|-.+-.+|.+. + +...-+|+++-+++-+.+. ++..+|+ +.|.
T Consensus 11 ~~~VdqaI~~t~~rlvViRFGr---~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~-l~~p~tv-mfFf 85 (142)
T KOG3414|consen 11 GWEVDQAILSTEERLVVIRFGR---DWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYE-LYDPPTV-MFFF 85 (142)
T ss_pred HHHHHHHHhcccceEEEEEecC---CCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhc-ccCCceE-EEEE
Confidence 4456666644 3566665553 3778888888888774 1 2345578888888888777 8999998 8999
Q ss_pred CCEEe
Q 020081 76 KGELL 80 (331)
Q Consensus 76 ~g~~v 80 (331)
+++|+
T Consensus 86 n~kHm 90 (142)
T KOG3414|consen 86 NNKHM 90 (142)
T ss_pred cCceE
Confidence 99987
No 481
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=86.63 E-value=2.3 Score=33.95 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHhcCCCEEEEEecCCCCCCCcc-hHHHHHHhhc-------CC---CCeEEEecCCC----HHHHHHHHhhcCCCCc
Q 020081 128 RLESLINSSPVMLFMKGKPEEPKCGF-SGKVVEILKQ-------GK---VDFGSFDILTD----EEVRQGLKVYSNWSSY 192 (331)
Q Consensus 128 ~~~~~~~~~~vvvf~~~~~~~~~C~~-C~~~~~~l~~-------~~---i~~~~~di~~~----~~~~~~l~~~~~~~~v 192 (331)
.+.++ ..+++|..+ |+.||++ |....+.|++ .+ +.+..+..+.. ..+++.++++ + ..+
T Consensus 16 ~l~~~--~gk~~vl~f---~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~-~-~~~ 88 (142)
T cd02968 16 TLSDL--KGKPVLVYF---GYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAF-G-PGW 88 (142)
T ss_pred chHHh--CCCEEEEEE---EcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHh-C-CCc
Q ss_pred cee
Q 020081 193 PQL 195 (331)
Q Consensus 193 P~i 195 (331)
|.+
T Consensus 89 ~~l 91 (142)
T cd02968 89 IGL 91 (142)
T ss_pred EEE
No 482
>PRK13599 putative peroxiredoxin; Provisional
Probab=86.57 E-value=2.1 Score=37.61 Aligned_cols=41 Identities=10% Similarity=-0.003 Sum_probs=27.3
Q ss_pred CCEEEEEecCCCCCCChhHHHH-------HHHHHhCCCCeEEEEecCCHHH
Q 020081 14 HPVMLFMKGTPEEPKCGFSRQV-------VDILKDEKVEFGSFNILSDNEV 57 (331)
Q Consensus 14 ~~vvvf~~~~~~~~~C~~C~~~-------~~~l~~~~i~~~~vdi~~~~~~ 57 (331)
..+|+|++ |+.|||.|..- .+-+++.|+.+.-+.++.....
T Consensus 29 k~vVL~~~---pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~ 76 (215)
T PRK13599 29 KWFVLFSH---PADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSH 76 (215)
T ss_pred CeEEEEEe---CCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHH
Confidence 34556654 67899999973 3444446888888887765433
No 483
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=86.48 E-value=2.5 Score=33.67 Aligned_cols=56 Identities=14% Similarity=0.068 Sum_probs=33.1
Q ss_pred CCCEEEEEecCCCCCCCcchHHHHHHhh-------cCCCCeEEEecCCCHHHHHHHHhhcCCCCccee
Q 020081 135 SSPVMLFMKGKPEEPKCGFSGKVVEILK-------QGKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL 195 (331)
Q Consensus 135 ~~~vvvf~~~~~~~~~C~~C~~~~~~l~-------~~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i 195 (331)
...++|+.+. ..|||.|....+.|+ ..++.+..+.++....++++++++ ++ .+|.+
T Consensus 23 gk~~ll~f~~---~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~-~~-~~~~l 85 (140)
T cd03017 23 GKPVVLYFYP---KDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKY-GL-PFPLL 85 (140)
T ss_pred CCcEEEEEeC---CCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHh-CC-CceEE
Confidence 4444554442 148999975544443 356777777766666667666655 55 46643
No 484
>PRK11752 putative S-transferase; Provisional
Probab=86.39 E-value=3.7 Score=37.17 Aligned_cols=75 Identities=15% Similarity=0.207 Sum_probs=52.4
Q ss_pred HhhcCCEEEEecCCCCCCCCcchHHHHHHHhhc------CCccEEEEecC--CHHHHHHHHhhcCCCCcCEEEECC----
Q 020081 240 LITSSPVMLFMKGNPDSPRCGFSSKVVNALKEE------GVNFGSFDILT--DEEVRQGLKVYSNWPTFPQLYHKG---- 307 (331)
Q Consensus 240 ~~~~~~v~vy~k~~p~~~~Cp~C~~a~~~l~~~------~v~~~~~dv~~--~~~~~~~l~~~~g~~~vP~ifi~g---- 307 (331)
....+++.+|+. .+|+|.+++-+|++. |++|+.+.|+- ......++.+..-...||++..++
T Consensus 39 ~~~~~~~~Ly~~------~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~ 112 (264)
T PRK11752 39 PVGKHPLQLYSL------GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPP 112 (264)
T ss_pred CCCCCCeEEecC------CCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCC
Confidence 344568999982 589999999999986 88898877643 222344566777778999998753
Q ss_pred eEEeeHHHHHHHH
Q 020081 308 ELIGGCDIVMELK 320 (331)
Q Consensus 308 ~~igg~~~~~~~~ 320 (331)
..+.-...+..+.
T Consensus 113 ~~L~ES~AIl~YL 125 (264)
T PRK11752 113 IRVFESGAILLYL 125 (264)
T ss_pred eEEEcHHHHHHHH
Confidence 4565555555543
No 485
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=85.86 E-value=2 Score=34.57 Aligned_cols=54 Identities=2% Similarity=-0.162 Sum_probs=32.2
Q ss_pred CCEEEEEecCCCCCC-ChhHHHHHHHHHhC-----CCCeEEEEecCCHHHHHHHhhhhCCCcccE
Q 020081 14 HPVMLFMKGTPEEPK-CGFSRQVVDILKDE-----KVEFGSFNILSDNEVREGLKKFSNWPTFPQ 72 (331)
Q Consensus 14 ~~vvvf~~~~~~~~~-C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ 72 (331)
..+||+. |+.| ||+|++-.+.|.++ ++.+..++++.....++... -.+...+|.
T Consensus 27 k~vvl~f----~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~-~~~~~~~~~ 86 (143)
T cd03014 27 KVKVISV----FPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCG-AEGVDNVTT 86 (143)
T ss_pred CeEEEEE----EcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHH-hcCCCCceE
Confidence 3455554 3346 79999876666552 67788888765444444444 335455653
No 486
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=85.65 E-value=3.4 Score=29.46 Aligned_cols=55 Identities=16% Similarity=0.069 Sum_probs=41.1
Q ss_pred CCChhHHHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechhhHHhh
Q 020081 27 PKCGFSRQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIAM 89 (331)
Q Consensus 27 ~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~~~ 89 (331)
..+|+|-++.-+|+-.+++|..+ ...++. .+..-.+|.|..+|+.|.+++.+.+.
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~-~~~n~~-------~sp~gkLP~l~~~~~~i~d~~~Ii~~ 68 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVV-PSNNPW-------RSPTGKLPALLTSGTKISGPEKIIEY 68 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEE-ecCCCC-------CCCCCccCEEEECCEEecChHHHHHH
Confidence 36899999999999999999655 322322 22345689999999999998876653
No 487
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=85.49 E-value=2.1 Score=37.13 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=53.6
Q ss_pred CChhHHHHHHHHHhC-----CCCeEEEEecCCHHHHHHHhhhhCCCcccEEEECCEEeechhhHHhh----hcccchHHH
Q 020081 28 KCGFSRQVVDILKDE-----KVEFGSFNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCDIVIAM----HKSGELKDV 98 (331)
Q Consensus 28 ~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~~~~~~----~~~~~l~~~ 98 (331)
.-+-|..+...|.-+ .++|+.+-- .+-.+.+.+. ..+.|++ +||.||+.||.|..+.+. .-.+.|.+.
T Consensus 170 gi~gcealn~~~~cLAAeyP~vKFckiks-s~~gas~~F~-~n~lP~L-liYkgGeLIgNFv~va~qlgedffa~dle~F 246 (273)
T KOG3171|consen 170 GIKGCEALNSSLTCLAAEYPIVKFCKIKS-SNTGASDRFS-LNVLPTL-LIYKGGELIGNFVSVAEQLGEDFFAGDLESF 246 (273)
T ss_pred CCchHHHHhhhHHHhhccCCceeEEEeee-ccccchhhhc-ccCCceE-EEeeCCchhHHHHHHHHHHhhhhhhhhHHHH
Confidence 556666666665554 345666543 2344556676 7899999 999999999988754332 234778899
Q ss_pred HHhcCccccc
Q 020081 99 FRDHGIETVG 108 (331)
Q Consensus 99 l~~~~~~~~~ 108 (331)
|...|..+..
T Consensus 247 L~e~gllpe~ 256 (273)
T KOG3171|consen 247 LNEYGLLPER 256 (273)
T ss_pred HHHcCCCccc
Confidence 9999876655
No 488
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=85.36 E-value=1.8 Score=37.43 Aligned_cols=69 Identities=16% Similarity=0.213 Sum_probs=47.9
Q ss_pred cCCEEEEecCCCCCCCCcchHHHHHHHhhcCCc--cEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEee----HHHH
Q 020081 243 SSPVMLFMKGNPDSPRCGFSSKVVNALKEEGVN--FGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGG----CDIV 316 (331)
Q Consensus 243 ~~~v~vy~k~~p~~~~Cp~C~~a~~~l~~~~v~--~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg----~~~~ 316 (331)
...|.||+ .-+|--|-..-+.|+.+|.- .+.+|-...+. ..++ .+.-++|-||+||+.+-+ .+++
T Consensus 10 ~~~VkI~~-----HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f--~~~~--~~V~SvP~Vf~DGel~~~dpVdp~~i 80 (265)
T COG5494 10 EMEVKIFT-----HKTCVSSYMLFEYLENKGLLGKVKIIDAELPPF--LAFE--KGVISVPSVFIDGELVYADPVDPEEI 80 (265)
T ss_pred heEEEEEE-----ecchHHHHHHHHHHHhcCCCCCceEEEcCCChH--HHhh--cceeecceEEEcCeEEEcCCCCHHHH
Confidence 34688899 45899999999999998873 44445433332 2222 377899999999997654 4566
Q ss_pred HHHH
Q 020081 317 MELK 320 (331)
Q Consensus 317 ~~~~ 320 (331)
..+.
T Consensus 81 es~~ 84 (265)
T COG5494 81 ESIL 84 (265)
T ss_pred HHHH
Confidence 5553
No 489
>PLN02473 glutathione S-transferase
Probab=85.26 E-value=3.2 Score=35.87 Aligned_cols=57 Identities=12% Similarity=0.082 Sum_probs=41.5
Q ss_pred CChhHHHHHHHHHhCCCCeEEEEecCC--HHHHHHHhhhhCCCcccEEEECCEEeechh
Q 020081 28 KCGFSRQVVDILKDEKVEFGSFNILSD--NEVREGLKKFSNWPTFPQLYCKGELLGGCD 84 (331)
Q Consensus 28 ~C~~C~~~~~~l~~~~i~~~~vdi~~~--~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~ 84 (331)
.|++|.+++-+|.++|++|..+.++-. +.....+..++-..++|.+..+|..+....
T Consensus 10 ~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~ 68 (214)
T PLN02473 10 KAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESR 68 (214)
T ss_pred CCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehH
Confidence 689999999999999999887765422 122233334777889999988887765444
No 490
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=84.91 E-value=1.2 Score=40.54 Aligned_cols=76 Identities=22% Similarity=0.227 Sum_probs=47.9
Q ss_pred CCCcchHHHHHHhhc-----CCCCeEEEecCCCHHHHHHHHhhcCCCCccee--eecCccccch----hhHHHHhhcchh
Q 020081 149 PKCGFSGKVVEILKQ-----GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL--YIKGELIGGS----DIVLEMQKSGEL 217 (331)
Q Consensus 149 ~~C~~C~~~~~~l~~-----~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i--fi~G~~vgg~----d~~~~~~~~g~L 217 (331)
+.++-|..+-..|.. ..++|..+....-+ + ...+....+|+| |.+|+.++.+ +.+..-+....|
T Consensus 156 ~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~----~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dl 230 (265)
T PF02114_consen 156 PGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-A----SENFPDKNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDL 230 (265)
T ss_dssp TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-T----TTTS-TTC-SEEEEEETTEEEEEECTGGGCT-TT--HHHH
T ss_pred CCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-c----ccCCcccCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHH
Confidence 689999888777764 47789888765432 1 233488899999 6788666433 333333455578
Q ss_pred HHHHhhhccchh
Q 020081 218 KKVLAEKGITVE 229 (331)
Q Consensus 218 ~~~l~~~~~~~~ 229 (331)
..+|.+.|+.+.
T Consensus 231 E~~L~~~G~l~~ 242 (265)
T PF02114_consen 231 EAFLIEYGVLPE 242 (265)
T ss_dssp HHHHHTTTSSS-
T ss_pred HHHHHHcCCCCC
Confidence 889988888643
No 491
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=84.89 E-value=2.4 Score=36.69 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=40.7
Q ss_pred CChhHHHHHHHHHhCCCCeEE--EEecCCHHHHHHHhhhhCCCcccEEEECCEEeechh
Q 020081 28 KCGFSRQVVDILKDEKVEFGS--FNILSDNEVREGLKKFSNWPTFPQLYCKGELLGGCD 84 (331)
Q Consensus 28 ~C~~C~~~~~~l~~~~i~~~~--vdi~~~~~~~~~~~~~~~~~t~P~ifi~g~~vgg~~ 84 (331)
.||+|+++...|...+++|.. ||+..-++ .+..++....+|.+..||+.+-..+
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~---~f~~~sp~~~~P~l~~d~~~~tDs~ 75 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPE---WFLDISPGGKPPVLKFDEKWVTDSD 75 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCcH---HHHhhCCCCCCCeEEeCCceeccHH
Confidence 699999999999999988755 45443333 3444778888999999998875544
No 492
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=84.81 E-value=2.8 Score=33.33 Aligned_cols=58 Identities=10% Similarity=0.059 Sum_probs=32.0
Q ss_pred cCCCEEEEEecCCCCCCCcchHHHHHHhhc-------CCCCeEEEecCCCHHHHHHHHhhcCCCCccee
Q 020081 134 NSSPVMLFMKGKPEEPKCGFSGKVVEILKQ-------GKVDFGSFDILTDEEVRQGLKVYSNWSSYPQL 195 (331)
Q Consensus 134 ~~~~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i 195 (331)
.+..++|+.+. ..||++|....+.|++ .++.+..+..+....+++++++. +...+|.+
T Consensus 21 ~gk~~ll~f~~---~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~-~~~~~~~l 85 (140)
T cd02971 21 KGKWVVLFFYP---KDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE-GGLNFPLL 85 (140)
T ss_pred CCCeEEEEEeC---CCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc-cCCCceEE
Confidence 34445554442 2489999765544443 46777777765444445444333 34456654
No 493
>PRK13190 putative peroxiredoxin; Provisional
Probab=84.76 E-value=2.3 Score=36.81 Aligned_cols=60 Identities=17% Similarity=0.113 Sum_probs=0.0
Q ss_pred hCCCEEEEEecCCCCCCChhHH-------HHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCC----cccEEE
Q 020081 12 DSHPVMLFMKGTPEEPKCGFSR-------QVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWP----TFPQLY 74 (331)
Q Consensus 12 ~~~~vvvf~~~~~~~~~C~~C~-------~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~----t~P~if 74 (331)
+...++||++ |+.|||.|. +..+-|++.|+.+..+.++......+.+..+.... .+|.+.
T Consensus 26 ~gk~vvL~~~---p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~ 96 (202)
T PRK13190 26 KGKWVLLFSH---PADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIA 96 (202)
T ss_pred CCCEEEEEEE---cCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEE
No 494
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=84.59 E-value=3.3 Score=33.81 Aligned_cols=62 Identities=15% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHhhCCCEEEEEecCCCCCCChhH-------HHHHHHHHhCCCCeEEEEecCCHHHHHHHhhhhCCCcccEEE
Q 020081 7 LQQLLDSHPVMLFMKGTPEEPKCGFS-------RQVVDILKDEKVEFGSFNILSDNEVREGLKKFSNWPTFPQLY 74 (331)
Q Consensus 7 ~~~~i~~~~vvvf~~~~~~~~~C~~C-------~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~if 74 (331)
+.+...+.-++.|..+. |||.| .+..+-+...++.+..+..+...++++.++ -.+. ++|.+.
T Consensus 25 l~~~~gk~~ll~f~~~~----~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~-~~~~-~~~~l~ 93 (154)
T PRK09437 25 LTDFQGQRVLVYFYPKA----MTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAE-KELL-NFTLLS 93 (154)
T ss_pred HHHhCCCCEEEEEECCC----CCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHH-HhCC-CCeEEE
No 495
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=84.52 E-value=2.5 Score=35.34 Aligned_cols=57 Identities=7% Similarity=-0.109 Sum_probs=0.0
Q ss_pred CCCEEEEEecCCCCCC-ChhHHHHHHHHHhC-----CCCeEEEEecCCHHHHHHHhhhhCCCcccEE
Q 020081 13 SHPVMLFMKGTPEEPK-CGFSRQVVDILKDE-----KVEFGSFNILSDNEVREGLKKFSNWPTFPQL 73 (331)
Q Consensus 13 ~~~vvvf~~~~~~~~~-C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~~~~~t~P~i 73 (331)
..+++|+.+ |+.| ||+|..-.+.|.++ ++.+..+..+.....++... -.+.+.+|.+
T Consensus 43 ~Gk~vvl~f---~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~-~~~~~~~~~l 105 (167)
T PRK00522 43 AGKRKVLNI---FPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCG-AEGLENVITL 105 (167)
T ss_pred CCCEEEEEE---EcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHH-hCCCCCceEe
No 496
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.50 E-value=5.1 Score=34.94 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=51.4
Q ss_pred CCcchHHHHHHHhhcCCccEEEEecCCHHHHHHHHhhcCCCCcCEEEECCeEEeeHHHHHHHH
Q 020081 258 RCGFSSKVVNALKEEGVNFGSFDILTDEEVRQGLKVYSNWPTFPQLYHKGELIGGCDIVMELK 320 (331)
Q Consensus 258 ~Cp~C~~a~~~l~~~~v~~~~~dv~~~~~~~~~l~~~~g~~~vP~ifi~g~~igg~~~~~~~~ 320 (331)
..+.|.-++.+|.-.|++|+++.+..... ...++..+-...+|++-|||..+..--.+..+.
T Consensus 11 ~RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyL 72 (206)
T KOG1695|consen 11 IRGLAEPIRLLFAYAGVSFEDKRITMEDA-WEELKDKMPFGQLPVLEVDGKKLVQSRAILRYL 72 (206)
T ss_pred cchhHHHHHHHHHhcCCCcceeeeccccc-hhhhcccCCCCCCCEEeECCEeeccHHHHHHHH
Confidence 67899999999999999999999976554 566777788889999999999888766555543
No 497
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=84.30 E-value=2.4 Score=36.20 Aligned_cols=54 Identities=26% Similarity=0.431 Sum_probs=29.7
Q ss_pred CEEEEEecCCCCCCChhHHHHHHHHHh-------CCCCeEEEEec--------CCHHHHHHHhhhhCCCcccEEE
Q 020081 15 PVMLFMKGTPEEPKCGFSRQVVDILKD-------EKVEFGSFNIL--------SDNEVREGLKKFSNWPTFPQLY 74 (331)
Q Consensus 15 ~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~--------~~~~~~~~~~~~~~~~t~P~if 74 (331)
++||..+ ||.||++|..+. .|++ .|+.+.-+..+ ...++++...+-.| .+|| +|
T Consensus 26 KvvLVvf---~AS~C~~~~q~~-~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g-~~Fp-v~ 94 (183)
T PRK10606 26 NVLLIVN---VASKCGLTPQYE-QLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWG-VTFP-MF 94 (183)
T ss_pred CEEEEEE---EeCCCCCcHHHH-HHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccC-CCce-eE
Confidence 5555554 667999997532 3333 35666666553 22456655542223 5787 44
No 498
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=84.04 E-value=2.1 Score=36.68 Aligned_cols=91 Identities=20% Similarity=0.231 Sum_probs=57.5
Q ss_pred HHHHHHHhcCCCEEE-EEecCCCCCCCcchHHH---HHHhhcC--CCCeEEEecCCCHHHHHHHHhhcCCCCccee--ee
Q 020081 126 TSRLESLINSSPVML-FMKGKPEEPKCGFSGKV---VEILKQG--KVDFGSFDILTDEEVRQGLKVYSNWSSYPQL--YI 197 (331)
Q Consensus 126 ~~~~~~~~~~~~vvv-f~~~~~~~~~C~~C~~~---~~~l~~~--~i~~~~~di~~~~~~~~~l~~~~~~~~vP~i--fi 197 (331)
++.++...++.+||+ |+. |.-.-|+-+ ..+|... ...|..+|+..-|.+...| ++..+|+| |.
T Consensus 75 kdf~~~~~kS~kVVcHFY~-----~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL----~IkVLP~v~l~k 145 (211)
T KOG1672|consen 75 KDFFEEVKKSEKVVCHFYR-----PEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKL----NIKVLPTVALFK 145 (211)
T ss_pred HHHHHHhhcCceEEEEEEc-----CCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeee----eeeEeeeEEEEE
Confidence 455666656655554 444 344455544 5555543 5579999999888887444 99999999 78
Q ss_pred cCccc---cchhhHHH--HhhcchhHHHHhhhc
Q 020081 198 KGELI---GGSDIVLE--MQKSGELKKVLAEKG 225 (331)
Q Consensus 198 ~G~~v---gg~d~~~~--~~~~g~L~~~l~~~~ 225 (331)
||+.+ .||.+|.. -+....|...|..++
T Consensus 146 ~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~S~ 178 (211)
T KOG1672|consen 146 NGKTVDYVVGFTDLGNKDDFTTETLENRLAKSG 178 (211)
T ss_pred cCEEEEEEeeHhhcCCCCcCcHHHHHHHHhhcc
Confidence 98544 67776654 233344555555444
No 499
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=83.96 E-value=2.8 Score=35.78 Aligned_cols=60 Identities=23% Similarity=0.373 Sum_probs=32.6
Q ss_pred CEEEEEecCCCCCCCcchHHHHHHhhc-------CCCCeEEEecC--------CCHHHHHHHHhhcCCCCccee---eec
Q 020081 137 PVMLFMKGKPEEPKCGFSGKVVEILKQ-------GKVDFGSFDIL--------TDEEVRQGLKVYSNWSSYPQL---YIK 198 (331)
Q Consensus 137 ~vvvf~~~~~~~~~C~~C~~~~~~l~~-------~~i~~~~~di~--------~~~~~~~~l~~~~~~~~vP~i---fi~ 198 (331)
+++|..+ |+.||++|.++ +.|++ .++.+.-+... .+.++++.++..+|+ ++|.+ =+|
T Consensus 26 KvvLVvf---~AS~C~~~~q~-~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~-~Fpv~~k~dvn 100 (183)
T PRK10606 26 NVLLIVN---VASKCGLTPQY-EQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGV-TFPMFSKIEVN 100 (183)
T ss_pred CEEEEEE---EeCCCCCcHHH-HHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCC-CceeEEEEccC
Confidence 5566655 66899999753 23332 35555555442 235566666433365 46765 245
Q ss_pred Ccc
Q 020081 199 GEL 201 (331)
Q Consensus 199 G~~ 201 (331)
|+.
T Consensus 101 G~~ 103 (183)
T PRK10606 101 GEG 103 (183)
T ss_pred CCC
Confidence 544
No 500
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=83.26 E-value=3.2 Score=35.92 Aligned_cols=46 Identities=13% Similarity=0.119 Sum_probs=29.5
Q ss_pred HHHHhcCCCEEEEEecCCCCCCCcchHHHHHHh-------hcCCCCeEEEecCCCH
Q 020081 129 LESLINSSPVMLFMKGKPEEPKCGFSGKVVEIL-------KQGKVDFGSFDILTDE 177 (331)
Q Consensus 129 ~~~~~~~~~vvvf~~~~~~~~~C~~C~~~~~~l-------~~~~i~~~~~di~~~~ 177 (331)
+.++..+..++||.+ |+.|||.|..-...| ++.++.+.-+.++...
T Consensus 19 l~d~~g~k~vvlf~~---pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~ 71 (203)
T cd03016 19 FHDYLGDSWGILFSH---PADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVE 71 (203)
T ss_pred HHHHcCCCEEEEEEe---cCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHH
Confidence 455544355777766 678999997544444 3467777777766433
Done!