Query 020082
Match_columns 331
No_of_seqs 161 out of 1644
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 06:52:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 7.1E-62 1.5E-66 443.9 31.0 290 3-315 12-311 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 1.7E-61 3.6E-66 432.9 29.2 300 3-318 23-330 (336)
3 TIGR01293 Kv_beta voltage-depe 100.0 7.7E-56 1.7E-60 407.1 29.3 293 3-311 10-316 (317)
4 PRK09912 L-glyceraldehyde 3-ph 100.0 7.1E-55 1.5E-59 404.8 29.2 293 3-314 24-334 (346)
5 PRK10625 tas putative aldo-ket 100.0 5.7E-54 1.2E-58 399.3 30.2 289 3-314 12-340 (346)
6 PF00248 Aldo_ket_red: Aldo/ke 100.0 7.3E-54 1.6E-58 388.6 26.6 275 6-312 1-282 (283)
7 PLN02587 L-galactose dehydroge 100.0 2.9E-53 6.3E-58 389.7 30.5 277 3-314 10-301 (314)
8 COG0656 ARA1 Aldo/keto reducta 100.0 1E-53 2.3E-58 376.0 25.4 250 4-316 14-267 (280)
9 PRK14863 bifunctional regulato 100.0 5.1E-53 1.1E-57 383.0 25.2 266 3-312 4-281 (292)
10 PRK11172 dkgB 2,5-diketo-D-glu 100.0 3.9E-52 8.6E-57 373.4 27.9 249 3-316 2-255 (267)
11 cd06660 Aldo_ket_red Aldo-keto 100.0 1.6E-50 3.4E-55 367.1 29.1 269 3-310 10-284 (285)
12 PRK10376 putative oxidoreducta 100.0 1.4E-50 2.9E-55 367.7 28.5 258 3-313 16-288 (290)
13 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.8E-49 3.9E-54 357.4 25.5 249 3-315 14-264 (275)
14 COG4989 Predicted oxidoreducta 100.0 5.7E-48 1.2E-52 325.6 19.3 268 3-312 12-292 (298)
15 KOG1577 Aldo/keto reductase fa 100.0 2.5E-46 5.4E-51 329.2 24.8 257 4-316 15-288 (300)
16 COG1453 Predicted oxidoreducta 100.0 2.1E-44 4.5E-49 320.2 22.4 260 3-316 12-288 (391)
17 KOG1576 Predicted oxidoreducta 100.0 7.3E-43 1.6E-47 296.7 24.0 276 2-312 32-320 (342)
18 KOG3023 Glutamate-cysteine lig 97.9 3.6E-05 7.8E-10 65.8 6.8 72 124-196 155-227 (285)
19 PRK00208 thiG thiazole synthas 90.3 12 0.00026 33.0 15.9 107 86-195 71-181 (250)
20 cd04728 ThiG Thiazole synthase 89.4 14 0.00031 32.5 15.9 107 86-195 71-181 (248)
21 PRK10558 alpha-dehydro-beta-de 84.2 9.9 0.00021 33.9 9.5 67 131-198 10-78 (256)
22 TIGR00190 thiC thiamine biosyn 83.9 40 0.00086 31.9 17.6 167 4-205 50-228 (423)
23 cd03174 DRE_TIM_metallolyase D 83.6 4.8 0.0001 35.7 7.4 105 88-196 16-135 (265)
24 PF05690 ThiG: Thiazole biosyn 82.8 27 0.00058 30.6 11.1 107 87-196 72-182 (247)
25 TIGR01228 hutU urocanate hydra 82.8 3.8 8.3E-05 39.4 6.5 63 99-169 193-257 (545)
26 PRK05414 urocanate hydratase; 82.6 4 8.6E-05 39.5 6.6 63 99-169 202-266 (556)
27 PF07021 MetW: Methionine bios 82.2 8.6 0.00019 32.6 7.8 105 95-202 62-172 (193)
28 COG1140 NarY Nitrate reductase 80.3 1.1 2.3E-05 41.6 1.9 56 136-191 262-317 (513)
29 TIGR03239 GarL 2-dehydro-3-deo 80.1 17 0.00036 32.3 9.4 66 132-198 4-71 (249)
30 PRK13352 thiamine biosynthesis 79.6 58 0.0013 31.0 18.3 167 4-205 50-231 (431)
31 cd03319 L-Ala-DL-Glu_epimerase 79.6 38 0.00081 31.0 12.0 73 128-201 217-291 (316)
32 COG2102 Predicted ATPases of P 79.3 7.8 0.00017 33.5 6.7 98 124-261 75-177 (223)
33 PRK10128 2-keto-3-deoxy-L-rham 78.4 28 0.00061 31.2 10.3 67 131-198 9-77 (267)
34 cd06543 GH18_PF-ChiA-like PF-C 74.5 41 0.0009 30.6 10.5 83 54-137 54-136 (294)
35 COG2987 HutU Urocanate hydrata 73.9 6.2 0.00013 37.6 5.0 58 101-166 204-261 (561)
36 cd00739 DHPS DHPS subgroup of 73.7 35 0.00077 30.3 9.7 103 88-197 21-128 (257)
37 TIGR03822 AblA_like_2 lysine-2 73.7 75 0.0016 29.3 12.8 110 89-202 120-240 (321)
38 TIGR01290 nifB nitrogenase cof 73.6 74 0.0016 30.8 12.5 111 87-201 59-199 (442)
39 PF01175 Urocanase: Urocanase; 73.1 8.4 0.00018 37.4 5.7 63 99-169 192-256 (546)
40 PRK07328 histidinol-phosphatas 71.7 60 0.0013 28.9 10.9 99 94-193 94-225 (269)
41 COG2355 Zn-dependent dipeptida 71.1 33 0.00072 31.4 8.9 30 278-309 269-299 (313)
42 cd07939 DRE_TIM_NifV Streptomy 69.5 81 0.0018 27.9 12.4 99 87-193 16-127 (259)
43 PLN02746 hydroxymethylglutaryl 69.4 83 0.0018 29.4 11.4 103 88-196 65-182 (347)
44 TIGR02311 HpaI 2,4-dihydroxyhe 69.2 50 0.0011 29.2 9.6 66 131-197 3-70 (249)
45 PRK09613 thiH thiamine biosynt 68.9 95 0.0021 30.3 12.1 109 87-198 114-241 (469)
46 TIGR00381 cdhD CO dehydrogenas 68.5 1.1E+02 0.0023 29.0 13.0 106 91-203 128-254 (389)
47 cd00423 Pterin_binding Pterin 68.1 87 0.0019 27.8 12.3 104 88-198 21-129 (258)
48 PF07994 NAD_binding_5: Myo-in 67.6 44 0.00095 30.5 9.0 142 89-283 130-279 (295)
49 CHL00162 thiG thiamin biosynth 67.1 81 0.0018 28.0 10.0 71 87-158 80-156 (267)
50 TIGR01182 eda Entner-Doudoroff 64.4 25 0.00055 30.1 6.5 88 89-194 18-106 (204)
51 TIGR01496 DHPS dihydropteroate 64.0 1.1E+02 0.0023 27.3 10.9 100 88-196 20-125 (257)
52 cd07944 DRE_TIM_HOA_like 4-hyd 63.7 1.1E+02 0.0024 27.3 12.2 105 87-195 16-128 (266)
53 TIGR02026 BchE magnesium-proto 63.3 56 0.0012 32.1 9.6 65 124-190 322-392 (497)
54 TIGR02660 nifV_homocitr homoci 63.1 1.3E+02 0.0029 28.1 13.3 98 88-193 20-130 (365)
55 cd00308 enolase_like Enolase-s 62.9 47 0.001 28.7 8.2 87 109-201 120-208 (229)
56 PRK06015 keto-hydroxyglutarate 62.5 29 0.00062 29.7 6.4 88 89-194 14-102 (201)
57 PRK06424 transcription factor; 60.5 33 0.00073 27.6 6.2 58 244-301 84-141 (144)
58 cd07943 DRE_TIM_HOA 4-hydroxy- 59.4 52 0.0011 29.2 7.9 104 88-195 19-131 (263)
59 PRK04452 acetyl-CoA decarbonyl 58.9 68 0.0015 29.6 8.6 92 102-198 86-184 (319)
60 PF01081 Aldolase: KDPG and KH 58.7 35 0.00075 29.1 6.3 88 89-194 18-106 (196)
61 PRK08776 cystathionine gamma-s 58.5 1.2E+02 0.0025 29.0 10.6 88 110-202 100-188 (405)
62 COG0135 TrpF Phosphoribosylant 58.3 66 0.0014 27.7 7.9 83 101-195 18-104 (208)
63 COG1151 6Fe-6S prismane cluste 58.0 77 0.0017 31.4 9.1 50 91-143 360-411 (576)
64 COG2022 ThiG Uncharacterized e 58.0 1.3E+02 0.0028 26.4 15.0 109 86-198 78-191 (262)
65 COG1748 LYS9 Saccharopine dehy 57.9 59 0.0013 30.9 8.2 16 105-120 144-159 (389)
66 PRK07945 hypothetical protein; 54.8 1.8E+02 0.0039 27.0 14.3 82 106-193 191-288 (335)
67 PF01964 ThiC: ThiC family; I 54.7 1.1E+02 0.0024 29.0 9.3 166 4-201 49-227 (420)
68 TIGR00221 nagA N-acetylglucosa 54.6 1.9E+02 0.0042 27.3 11.9 37 126-162 178-214 (380)
69 PF11242 DUF2774: Protein of u 54.5 17 0.00038 24.4 2.9 24 247-270 14-37 (63)
70 PRK13958 N-(5'-phosphoribosyl) 54.2 37 0.00081 29.1 5.9 67 101-171 17-84 (207)
71 PRK13753 dihydropteroate synth 54.2 1.7E+02 0.0037 26.5 10.9 103 88-199 22-129 (279)
72 PRK06740 histidinol-phosphatas 54.2 1.8E+02 0.0038 27.0 10.7 99 95-194 156-289 (331)
73 COG3623 SgaU Putative L-xylulo 54.1 27 0.00058 30.6 4.8 47 14-61 83-135 (287)
74 PRK14461 ribosomal RNA large s 53.7 83 0.0018 29.7 8.4 91 112-202 232-354 (371)
75 PRK08392 hypothetical protein; 53.2 1.5E+02 0.0031 25.4 10.1 81 106-193 86-178 (215)
76 PRK11840 bifunctional sulfur c 53.0 1.9E+02 0.0041 26.7 12.8 74 86-160 145-218 (326)
77 PRK08195 4-hyroxy-2-oxovalerat 52.9 1.5E+02 0.0033 27.5 10.1 103 87-195 21-134 (337)
78 PF00356 LacI: Bacterial regul 52.2 29 0.00063 21.9 3.7 42 249-298 2-43 (46)
79 COG2040 MHT1 Homocysteine/sele 52.0 1.7E+02 0.0037 26.5 9.6 105 87-197 126-241 (300)
80 PRK07114 keto-hydroxyglutarate 51.2 1.5E+02 0.0033 25.8 9.2 91 89-194 25-117 (222)
81 cd03322 rpsA The starvation se 51.1 81 0.0018 29.5 8.1 71 127-198 202-274 (361)
82 cd03316 MR_like Mandelate race 50.9 67 0.0015 29.8 7.6 82 110-197 216-299 (357)
83 PRK11858 aksA trans-homoaconit 50.7 2.2E+02 0.0048 26.8 12.0 100 87-194 22-134 (378)
84 cd07948 DRE_TIM_HCS Saccharomy 50.7 1.8E+02 0.004 25.9 10.6 102 87-196 18-132 (262)
85 COG2069 CdhD CO dehydrogenase/ 50.4 2E+02 0.0043 26.2 10.7 92 101-200 160-262 (403)
86 cd01948 EAL EAL domain. This d 50.3 1.1E+02 0.0023 26.1 8.3 102 91-197 98-210 (240)
87 PRK07535 methyltetrahydrofolat 49.8 1.9E+02 0.0041 25.8 12.3 100 89-197 23-124 (261)
88 PRK06552 keto-hydroxyglutarate 49.8 66 0.0014 27.7 6.7 88 89-194 23-114 (213)
89 TIGR02080 O_succ_thio_ly O-suc 49.8 2.1E+02 0.0046 26.9 10.8 88 110-202 91-179 (382)
90 PLN03228 methylthioalkylmalate 49.8 2.7E+02 0.0058 27.5 12.2 102 87-197 102-230 (503)
91 TIGR02026 BchE magnesium-proto 49.5 2.5E+02 0.0055 27.5 11.6 105 88-198 222-345 (497)
92 PRK02399 hypothetical protein; 48.6 49 0.0011 31.5 6.0 61 95-162 199-273 (406)
93 cd03318 MLE Muconate Lactonizi 48.5 69 0.0015 29.9 7.2 74 127-201 227-302 (365)
94 TIGR03217 4OH_2_O_val_ald 4-hy 47.6 1.4E+02 0.0029 27.8 8.8 104 87-195 20-133 (333)
95 PRK01222 N-(5'-phosphoribosyl) 47.5 1.1E+02 0.0023 26.3 7.7 67 101-171 19-86 (210)
96 PF00809 Pterin_bind: Pterin b 47.4 88 0.0019 26.8 7.2 91 101-198 28-125 (210)
97 PF13378 MR_MLE_C: Enolase C-t 46.7 30 0.00065 26.0 3.7 54 146-201 3-57 (111)
98 PRK15072 bifunctional D-altron 46.4 1.3E+02 0.0028 28.7 8.8 71 127-198 245-317 (404)
99 PLN02363 phosphoribosylanthran 46.2 61 0.0013 28.9 6.1 75 89-171 56-131 (256)
100 TIGR03821 AblA_like_1 lysine-2 45.7 2.5E+02 0.0053 25.9 12.6 75 127-202 161-246 (321)
101 PF06792 UPF0261: Uncharacteri 45.1 58 0.0013 31.0 6.0 71 95-172 198-282 (403)
102 PRK05692 hydroxymethylglutaryl 45.0 2.4E+02 0.0051 25.5 18.5 106 88-196 23-140 (287)
103 PRK06361 hypothetical protein; 45.0 1.9E+02 0.0042 24.5 12.1 124 97-268 77-201 (212)
104 COG0626 MetC Cystathionine bet 44.8 1.1E+02 0.0023 29.3 7.8 82 124-205 112-195 (396)
105 cd00405 PRAI Phosphoribosylant 44.8 88 0.0019 26.5 6.8 102 28-153 11-113 (203)
106 TIGR02534 mucon_cyclo muconate 44.3 77 0.0017 29.7 6.9 75 127-202 226-302 (368)
107 COG3887 Predicted signaling pr 44.0 2.8E+02 0.006 28.0 10.4 117 16-144 268-402 (655)
108 COG4130 Predicted sugar epimer 43.8 1.9E+02 0.0041 25.1 8.2 55 148-202 49-109 (272)
109 TIGR00035 asp_race aspartate r 43.3 1.7E+02 0.0036 25.4 8.4 64 89-153 15-89 (229)
110 COG1104 NifS Cysteine sulfinat 43.1 83 0.0018 29.8 6.7 75 126-202 103-184 (386)
111 cd03325 D-galactonate_dehydrat 42.7 1.5E+02 0.0032 27.6 8.5 69 127-196 215-285 (352)
112 PRK09058 coproporphyrinogen II 42.6 2.2E+02 0.0048 27.6 9.9 103 88-205 227-335 (449)
113 TIGR03070 couple_hipB transcri 42.4 22 0.00048 22.8 2.1 22 247-268 5-26 (58)
114 PRK15108 biotin synthase; Prov 42.0 2.9E+02 0.0063 25.7 13.4 110 88-201 76-196 (345)
115 PRK11170 nagA N-acetylglucosam 41.6 3.1E+02 0.0067 25.9 12.0 34 129-162 179-212 (382)
116 PRK14017 galactonate dehydrata 41.6 1.6E+02 0.0034 27.8 8.5 69 128-197 217-287 (382)
117 cd03323 D-glucarate_dehydratas 41.2 1.3E+02 0.0028 28.6 7.9 70 128-198 250-321 (395)
118 PF01053 Cys_Met_Meta_PP: Cys/ 40.9 96 0.0021 29.4 6.9 82 124-205 104-187 (386)
119 TIGR01502 B_methylAsp_ase meth 40.8 2E+02 0.0044 27.5 9.0 86 110-198 265-357 (408)
120 COG0820 Predicted Fe-S-cluster 40.5 2.9E+02 0.0064 25.8 9.7 90 112-202 216-332 (349)
121 PRK12928 lipoyl synthase; Prov 40.5 2.8E+02 0.0061 25.1 12.8 108 86-194 85-208 (290)
122 PF00682 HMGL-like: HMGL-like 40.3 2.4E+02 0.0051 24.3 9.0 98 88-192 11-124 (237)
123 cd03315 MLE_like Muconate lact 40.3 2.6E+02 0.0056 24.6 13.3 103 88-202 140-244 (265)
124 TIGR01378 thi_PPkinase thiamin 40.0 2.3E+02 0.0051 24.0 8.8 39 258-296 72-110 (203)
125 TIGR01329 cysta_beta_ly_E cyst 39.8 1.9E+02 0.0041 27.2 8.8 89 110-203 86-175 (378)
126 PRK09856 fructoselysine 3-epim 39.7 1.8E+02 0.0039 25.6 8.3 20 179-198 93-112 (275)
127 PRK08247 cystathionine gamma-s 39.1 1.8E+02 0.0039 27.1 8.5 64 140-203 116-180 (366)
128 PRK08861 cystathionine gamma-s 38.9 3.4E+02 0.0075 25.7 11.3 90 109-203 92-182 (388)
129 COG1801 Uncharacterized conser 38.9 1.8E+02 0.0039 26.0 7.9 100 6-119 4-114 (263)
130 COG1751 Uncharacterized conser 38.4 2E+02 0.0042 23.5 7.1 88 112-201 2-95 (186)
131 PRK05588 histidinol-phosphatas 38.2 2.8E+02 0.006 24.3 12.7 102 94-196 80-216 (255)
132 PF05368 NmrA: NmrA-like famil 38.0 1.3E+02 0.0029 25.6 7.0 85 107-201 21-106 (233)
133 PRK06294 coproporphyrinogen II 37.8 3.3E+02 0.0072 25.5 10.1 16 190-205 258-273 (370)
134 COG1902 NemA NADH:flavin oxido 37.6 3.6E+02 0.0077 25.4 11.6 38 20-61 139-181 (363)
135 PF14871 GHL6: Hypothetical gl 37.4 34 0.00074 27.1 2.8 25 175-199 43-67 (132)
136 cd03327 MR_like_2 Mandelate ra 37.4 1.4E+02 0.003 27.7 7.3 69 127-196 210-280 (341)
137 PRK10200 putative racemase; Pr 37.2 2.6E+02 0.0055 24.3 8.6 67 89-157 15-93 (230)
138 PRK07329 hypothetical protein; 37.1 2.9E+02 0.0062 24.2 13.9 102 95-197 83-216 (246)
139 COG0646 MetH Methionine syntha 37.1 3.3E+02 0.0071 24.9 12.9 34 125-158 273-307 (311)
140 PRK09427 bifunctional indole-3 37.0 1.9E+02 0.0041 28.2 8.3 72 89-172 266-339 (454)
141 PF11020 DUF2610: Domain of un 37.0 84 0.0018 22.4 4.3 31 238-269 46-76 (82)
142 PRK10128 2-keto-3-deoxy-L-rham 36.9 1.7E+02 0.0038 26.2 7.5 82 102-186 163-255 (267)
143 PRK10302 hypothetical protein; 36.9 2.7E+02 0.0058 25.1 8.7 97 7-118 4-104 (272)
144 PF11372 DUF3173: Domain of un 36.8 45 0.00097 22.4 2.8 28 21-49 15-42 (59)
145 TIGR02090 LEU1_arch isopropylm 36.5 2.8E+02 0.006 26.0 9.2 98 88-193 19-129 (363)
146 PRK02866 cyanate hydratase; Va 36.1 63 0.0014 26.1 4.1 63 247-311 8-70 (147)
147 PRK07811 cystathionine gamma-s 35.7 3.5E+02 0.0076 25.5 9.9 103 95-203 87-190 (388)
148 PF13407 Peripla_BP_4: Peripla 35.6 1.9E+02 0.0042 24.7 7.7 73 90-169 13-89 (257)
149 PRK08248 O-acetylhomoserine am 35.5 4.1E+02 0.0089 25.5 10.9 61 141-201 130-191 (431)
150 PRK11613 folP dihydropteroate 35.5 3.1E+02 0.0068 24.8 9.0 102 88-197 35-141 (282)
151 TIGR01928 menC_lowGC/arch o-su 35.4 1.5E+02 0.0031 27.3 7.1 88 109-202 198-287 (324)
152 smart00642 Aamy Alpha-amylase 35.3 52 0.0011 27.1 3.7 23 178-200 72-94 (166)
153 PRK00915 2-isopropylmalate syn 35.2 4.6E+02 0.0099 26.0 11.7 98 88-193 23-137 (513)
154 TIGR00048 radical SAM enzyme, 35.0 2.6E+02 0.0056 26.2 8.7 90 112-201 219-334 (355)
155 cd01321 ADGF Adenosine deamina 34.8 3.8E+02 0.0082 24.9 12.4 15 179-193 236-250 (345)
156 smart00657 RPOL4c DNA-directed 34.7 2.1E+02 0.0046 22.0 7.9 63 242-316 53-115 (118)
157 cd00740 MeTr MeTr subgroup of 34.6 3.3E+02 0.0071 24.1 11.0 106 88-201 23-131 (252)
158 PF03102 NeuB: NeuB family; I 34.5 1.2E+02 0.0026 26.8 6.0 60 88-151 123-183 (241)
159 TIGR00676 fadh2 5,10-methylene 34.0 3.4E+02 0.0074 24.2 13.8 106 88-203 70-193 (272)
160 PRK09726 antitoxin HipB; Provi 33.3 45 0.00098 24.1 2.7 56 246-301 14-69 (88)
161 PRK08045 cystathionine gamma-s 32.3 3.2E+02 0.0069 25.8 9.0 77 127-203 104-181 (386)
162 TIGR03471 HpnJ hopanoid biosyn 32.2 2.6E+02 0.0057 27.1 8.6 66 124-191 322-393 (472)
163 cd04742 NPD_FabD 2-Nitropropan 32.1 2.2E+02 0.0047 27.4 7.7 89 101-197 7-103 (418)
164 PRK05939 hypothetical protein; 32.0 4.5E+02 0.0097 24.9 10.2 86 110-202 87-174 (397)
165 PLN02428 lipoic acid synthase 31.8 3.6E+02 0.0078 25.2 9.0 99 98-198 195-323 (349)
166 COG3172 NadR Predicted ATPase/ 31.7 1.8E+02 0.004 24.1 6.1 92 38-138 78-185 (187)
167 PF14502 HTH_41: Helix-turn-he 31.5 52 0.0011 21.1 2.3 31 246-276 6-38 (48)
168 cd03770 SR_TndX_transposase Se 31.3 94 0.002 24.6 4.5 44 94-137 54-97 (140)
169 PRK08609 hypothetical protein; 31.2 3.5E+02 0.0077 27.2 9.4 82 106-193 429-522 (570)
170 COG2185 Sbm Methylmalonyl-CoA 31.2 2.4E+02 0.0053 22.7 6.7 57 142-203 19-77 (143)
171 COG0135 TrpF Phosphoribosylant 31.2 1.1E+02 0.0025 26.2 5.2 98 28-150 14-112 (208)
172 cd00956 Transaldolase_FSA Tran 31.1 3.4E+02 0.0074 23.3 10.6 34 126-160 89-122 (211)
173 cd00614 CGS_like CGS_like: Cys 30.6 4.5E+02 0.0097 24.4 10.3 56 148-203 113-169 (369)
174 COG2109 BtuR ATP:corrinoid ade 30.5 3.4E+02 0.0074 23.1 8.8 91 41-132 29-150 (198)
175 PF04481 DUF561: Protein of un 30.5 3.7E+02 0.008 23.4 9.5 49 85-138 97-145 (242)
176 smart00052 EAL Putative diguan 30.3 2.7E+02 0.0059 23.5 7.7 101 92-197 100-211 (241)
177 PF06506 PrpR_N: Propionate ca 30.2 1.1E+02 0.0025 25.2 5.0 68 124-197 63-133 (176)
178 PF07745 Glyco_hydro_53: Glyco 30.1 1.3E+02 0.0028 27.9 5.8 192 88-314 55-279 (332)
179 PF07287 DUF1446: Protein of u 29.9 2.4E+02 0.0051 26.6 7.4 17 179-195 61-77 (362)
180 COG1149 MinD superfamily P-loo 29.8 1E+02 0.0022 27.8 4.7 90 100-201 155-251 (284)
181 PF01381 HTH_3: Helix-turn-hel 29.8 12 0.00027 24.0 -0.8 13 286-298 38-50 (55)
182 PRK14459 ribosomal RNA large s 29.7 3.2E+02 0.0069 25.9 8.3 91 111-201 241-360 (373)
183 PRK01045 ispH 4-hydroxy-3-meth 29.6 4.2E+02 0.0091 24.2 8.8 43 247-292 226-274 (298)
184 TIGR01278 DPOR_BchB light-inde 29.4 5.6E+02 0.012 25.3 11.5 103 50-163 67-191 (511)
185 PRK13803 bifunctional phosphor 29.3 3E+02 0.0066 27.9 8.7 96 89-193 12-108 (610)
186 PRK08133 O-succinylhomoserine 29.2 4.9E+02 0.011 24.5 10.6 57 146-202 132-189 (390)
187 TIGR00284 dihydropteroate synt 29.2 4.3E+02 0.0094 26.1 9.4 94 91-196 165-258 (499)
188 cd07942 DRE_TIM_LeuA Mycobacte 29.2 3.7E+02 0.008 24.3 8.4 95 88-191 20-135 (284)
189 COG3653 N-acyl-D-aspartate/D-g 29.1 5.2E+02 0.011 25.1 9.3 47 247-296 385-435 (579)
190 cd08319 Death_RAIDD Death doma 29.1 68 0.0015 23.1 3.0 68 92-167 11-80 (83)
191 COG2873 MET17 O-acetylhomoseri 28.8 1.2E+02 0.0026 28.7 5.1 25 258-282 298-323 (426)
192 PRK08574 cystathionine gamma-s 28.6 4.9E+02 0.011 24.5 9.6 86 110-203 93-181 (385)
193 PRK15458 tagatose 6-phosphate 28.5 5.4E+02 0.012 24.8 14.0 44 5-49 83-130 (426)
194 cd07940 DRE_TIM_IPMS 2-isoprop 28.5 4.2E+02 0.0091 23.5 12.5 98 87-193 16-131 (268)
195 PRK09997 hydroxypyruvate isome 28.3 3.5E+02 0.0076 23.6 8.2 17 179-195 88-104 (258)
196 PRK09248 putative hydrolase; V 28.3 4E+02 0.0086 23.2 10.0 88 106-194 94-190 (246)
197 PLN02775 Probable dihydrodipic 28.2 4E+02 0.0086 24.2 8.3 71 97-172 68-138 (286)
198 PF01890 CbiG_C: Cobalamin syn 28.2 1.3E+02 0.0028 23.3 4.6 56 143-198 6-67 (121)
199 PLN02509 cystathionine beta-ly 28.1 3.8E+02 0.0083 26.1 8.9 56 148-203 205-261 (464)
200 PF00072 Response_reg: Respons 28.1 2.2E+02 0.0048 20.5 6.0 56 101-160 36-93 (112)
201 TIGR00216 ispH_lytB (E)-4-hydr 28.1 3.8E+02 0.0083 24.2 8.2 43 247-292 224-272 (280)
202 PF13380 CoA_binding_2: CoA bi 28.0 1.4E+02 0.0031 22.8 4.9 78 109-195 28-108 (116)
203 PRK05718 keto-hydroxyglutarate 28.0 2.4E+02 0.0051 24.3 6.7 87 89-193 25-112 (212)
204 PRK08249 cystathionine gamma-s 27.8 4.8E+02 0.01 24.7 9.4 57 146-202 135-192 (398)
205 PF10171 DUF2366: Uncharacteri 27.7 1.3E+02 0.0028 25.1 4.7 35 109-144 78-112 (173)
206 KOG1908 Ribonuclease inhibitor 27.7 2.5E+02 0.0053 22.2 5.9 64 242-316 77-140 (165)
207 TIGR01428 HAD_type_II 2-haloal 27.4 1.5E+02 0.0033 24.5 5.5 95 93-190 61-163 (198)
208 PRK09249 coproporphyrinogen II 27.3 5.7E+02 0.012 24.7 11.2 49 148-198 116-170 (453)
209 PRK08508 biotin synthase; Prov 27.3 4.5E+02 0.0098 23.5 12.4 110 88-199 40-160 (279)
210 cd06819 PLPDE_III_LS_D-TA Type 27.2 4.8E+02 0.01 24.0 9.3 97 88-196 12-108 (358)
211 PRK09028 cystathionine beta-ly 27.2 5.5E+02 0.012 24.4 10.7 89 110-204 101-191 (394)
212 cd00338 Ser_Recombinase Serine 27.1 1.3E+02 0.0027 23.2 4.6 45 94-138 51-95 (137)
213 PF01402 RHH_1: Ribbon-helix-h 27.0 1.4E+02 0.003 17.5 4.1 21 244-264 9-29 (39)
214 cd01821 Rhamnogalacturan_acety 26.8 3.6E+02 0.0078 22.2 9.1 60 139-198 36-116 (198)
215 cd00668 Ile_Leu_Val_MetRS_core 26.8 92 0.002 28.4 4.2 49 90-142 81-131 (312)
216 PF01902 ATP_bind_4: ATP-bindi 26.6 4.2E+02 0.0091 22.9 10.1 117 102-261 55-176 (218)
217 PF00101 RuBisCO_small: Ribulo 26.6 2.7E+02 0.0058 20.9 5.8 74 20-116 11-84 (99)
218 PRK06176 cystathionine gamma-s 26.5 4.5E+02 0.0098 24.7 8.9 56 148-203 122-178 (380)
219 cd03317 NAAAR N-acylamino acid 26.4 3E+02 0.0065 25.5 7.6 87 109-201 203-291 (354)
220 PRK12360 4-hydroxy-3-methylbut 26.2 4.9E+02 0.011 23.5 8.6 43 247-292 225-273 (281)
221 PRK12581 oxaloacetate decarbox 26.1 6.3E+02 0.014 24.7 12.5 52 89-146 102-153 (468)
222 PRK14464 ribosomal RNA large s 26.1 5E+02 0.011 24.3 8.8 78 124-201 225-318 (344)
223 PHA01976 helix-turn-helix prot 26.1 36 0.00077 22.9 1.0 21 247-267 5-25 (67)
224 COG4464 CapC Capsular polysacc 25.6 4.5E+02 0.0098 22.9 8.4 27 18-49 15-42 (254)
225 PRK13796 GTPase YqeH; Provisio 25.5 5.6E+02 0.012 24.0 11.0 124 21-157 55-180 (365)
226 PRK15440 L-rhamnonate dehydrat 25.4 2.5E+02 0.0054 26.7 7.0 68 127-195 247-318 (394)
227 TIGR03700 mena_SCO4494 putativ 25.3 5.5E+02 0.012 23.8 12.8 111 87-201 78-213 (351)
228 PF02525 Flavodoxin_2: Flavodo 25.3 2.1E+02 0.0046 23.8 6.0 83 27-118 95-180 (199)
229 cd03314 MAL Methylaspartate am 25.3 5.8E+02 0.013 24.0 10.1 70 127-197 244-320 (369)
230 PRK11024 colicin uptake protei 25.0 2E+02 0.0044 22.8 5.4 53 88-146 85-137 (141)
231 TIGR01334 modD putative molybd 25.0 3.7E+02 0.008 24.3 7.5 27 131-158 201-227 (277)
232 cd01573 modD_like ModD; Quinol 24.9 2.4E+02 0.0053 25.3 6.4 64 128-195 171-236 (272)
233 TIGR01856 hisJ_fam histidinol 24.9 4.7E+02 0.01 22.9 10.2 36 158-193 196-233 (253)
234 PRK07764 DNA polymerase III su 24.8 4.3E+02 0.0092 28.0 9.0 95 89-191 101-198 (824)
235 PF13443 HTH_26: Cro/C1-type H 24.7 18 0.0004 24.0 -0.6 13 286-298 40-52 (63)
236 PRK07810 O-succinylhomoserine 24.7 3.3E+02 0.0071 25.9 7.7 56 148-203 143-199 (403)
237 PRK05628 coproporphyrinogen II 24.6 5.8E+02 0.013 23.8 11.3 17 189-205 262-278 (375)
238 TIGR01927 menC_gamma/gm+ o-suc 24.4 3.9E+02 0.0085 24.3 7.9 73 129-202 196-270 (307)
239 PRK08208 coproporphyrinogen II 24.2 6.4E+02 0.014 24.2 10.3 48 149-198 106-160 (430)
240 PF01301 Glyco_hydro_35: Glyco 24.2 1.1E+02 0.0023 28.3 4.1 49 153-201 30-89 (319)
241 PF02401 LYTB: LytB protein; 24.1 3.1E+02 0.0066 24.8 6.9 44 247-293 225-274 (281)
242 PRK11267 biopolymer transport 24.1 2.4E+02 0.0051 22.4 5.6 55 87-147 80-134 (141)
243 PRK07998 gatY putative fructos 23.5 5.6E+02 0.012 23.2 9.1 23 274-296 200-222 (283)
244 PRK13347 coproporphyrinogen II 23.5 6.8E+02 0.015 24.2 9.9 25 89-114 217-241 (453)
245 PRK13347 coproporphyrinogen II 23.4 6.8E+02 0.015 24.2 13.2 58 139-198 103-171 (453)
246 PRK07671 cystathionine beta-ly 23.4 3.8E+02 0.0082 25.1 7.8 53 149-201 123-176 (377)
247 PRK14456 ribosomal RNA large s 23.2 4.6E+02 0.01 24.7 8.2 78 124-201 261-354 (368)
248 PRK13602 putative ribosomal pr 23.1 2.9E+02 0.0062 19.7 5.7 57 131-196 3-60 (82)
249 cd03527 RuBisCO_small Ribulose 23.0 3.3E+02 0.0072 20.4 7.2 83 9-116 3-85 (99)
250 PRK15063 isocitrate lyase; Pro 22.9 6.1E+02 0.013 24.5 8.8 113 20-146 199-314 (428)
251 PRK07504 O-succinylhomoserine 22.9 5.2E+02 0.011 24.4 8.7 58 146-203 136-194 (398)
252 PRK08072 nicotinate-nucleotide 22.9 3E+02 0.0065 24.8 6.6 40 127-168 174-214 (277)
253 smart00857 Resolvase Resolvase 22.6 2.5E+02 0.0054 21.9 5.6 49 94-143 51-99 (148)
254 COG2861 Uncharacterized protei 22.3 5.5E+02 0.012 22.7 8.6 92 124-258 105-208 (250)
255 PRK12331 oxaloacetate decarbox 22.2 4.6E+02 0.01 25.5 8.1 93 94-194 28-141 (448)
256 PF01261 AP_endonuc_2: Xylose 22.2 1.4E+02 0.003 24.7 4.2 20 179-198 74-93 (213)
257 PHA02128 hypothetical protein 22.1 2.9E+02 0.0063 20.9 5.2 71 125-195 60-150 (151)
258 TIGR03597 GTPase_YqeH ribosome 21.9 6.6E+02 0.014 23.4 9.3 80 76-157 95-174 (360)
259 PRK09943 DNA-binding transcrip 21.8 62 0.0013 26.9 1.9 56 245-300 8-63 (185)
260 cd00248 Mth938-like Mth938-lik 21.8 2.6E+02 0.0057 21.1 5.2 51 146-197 37-87 (109)
261 PF07027 DUF1318: Protein of u 21.8 1.9E+02 0.0042 21.4 4.3 30 240-269 44-73 (95)
262 PRK15408 autoinducer 2-binding 21.8 6.3E+02 0.014 23.2 8.9 71 90-167 38-112 (336)
263 COG1820 NagA N-acetylglucosami 21.7 7E+02 0.015 23.7 10.0 37 126-162 174-210 (380)
264 TIGR01325 O_suc_HS_sulf O-succ 21.7 6.7E+02 0.014 23.4 10.0 54 149-202 128-182 (380)
265 cd03768 SR_ResInv Serine Recom 21.3 2.1E+02 0.0046 21.6 4.8 43 94-138 42-84 (126)
266 COG0825 AccA Acetyl-CoA carbox 21.3 1.2E+02 0.0025 27.6 3.5 34 14-49 128-161 (317)
267 TIGR02814 pfaD_fam PfaD family 21.0 4.2E+02 0.0091 25.7 7.5 88 101-196 12-107 (444)
268 PRK14847 hypothetical protein; 21.0 6.5E+02 0.014 23.4 8.5 105 87-199 50-180 (333)
269 PRK09249 coproporphyrinogen II 21.0 7.4E+02 0.016 23.9 9.4 54 88-146 184-238 (453)
270 TIGR01324 cysta_beta_ly_B cyst 20.7 7.1E+02 0.015 23.4 10.7 53 151-203 126-179 (377)
271 PF13518 HTH_28: Helix-turn-he 20.6 1.2E+02 0.0026 18.9 2.7 22 248-270 14-35 (52)
272 PRK10551 phage resistance prot 20.6 3.8E+02 0.0081 26.5 7.4 101 91-197 364-475 (518)
273 PLN02444 HMP-P synthase 20.4 8.9E+02 0.019 24.4 17.4 165 4-205 210-386 (642)
274 PRK09058 coproporphyrinogen II 20.4 7.8E+02 0.017 23.8 13.8 109 88-198 40-182 (449)
275 cd03320 OSBS o-Succinylbenzoat 20.4 3.1E+02 0.0067 24.2 6.2 73 127-201 166-239 (263)
276 TIGR01660 narH nitrate reducta 20.3 62 0.0013 31.4 1.7 53 138-190 264-316 (492)
277 PRK06084 O-acetylhomoserine am 20.3 4.2E+02 0.0091 25.4 7.5 56 148-203 131-187 (425)
278 COG0761 lytB 4-Hydroxy-3-methy 20.3 4.2E+02 0.0092 24.0 6.8 44 247-293 228-277 (294)
279 cd03324 rTSbeta_L-fuconate_deh 20.2 4.9E+02 0.011 24.9 7.9 69 127-196 279-352 (415)
280 PLN00191 enolase 20.2 5.9E+02 0.013 24.8 8.4 98 88-196 295-395 (457)
281 PRK14041 oxaloacetate decarbox 20.1 8.3E+02 0.018 23.9 16.8 49 91-146 95-143 (467)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=7.1e-62 Score=443.93 Aligned_cols=290 Identities=22% Similarity=0.378 Sum_probs=246.8
Q ss_pred cccceeeeccccCC-CCCCchhhHHHHHHHHHHHhhhcCCccEEECCC----CchHHHHHHHHhhhhcCCCccchheeee
Q 020082 3 SVERDVADEWRVGP-YRPGRRRRCHASLRRCRSHHLRHGRSLSFDFVD----GPAEDLYGIFINRVRRERPPEFLDKVRG 77 (331)
Q Consensus 3 ~vS~l~lGt~~~g~-~~~~~~~~~~~~l~~al~~~~~~GGin~~DTA~----g~sE~~lG~~l~~~~~~~~~~~~~~~~~ 77 (331)
.||+||||||.||. +...+.+++.++|++|+++ ||||||||+ |.||++||+||+..++ |. .+++.+|+
T Consensus 12 ~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~-----Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~-Rd-~vvIaTK~ 84 (316)
T COG0667 12 KVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDA-----GINFFDTADVYGDGRSEEILGEALKERGR-RD-KVVIATKV 84 (316)
T ss_pred eecceeeeccccCCCCCchhhhHHHHHHHHHHHc-----CCCEEECccccCCCchHHHHHHHHhccCC-CC-eEEEEEee
Confidence 58999999999986 3445556778899999555 599999999 5899999999998764 22 67777777
Q ss_pred ccccc---CCC-CCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHH
Q 020082 78 LTKWV---PPP-VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERL 153 (331)
Q Consensus 78 ~~k~~---~~~-~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l 153 (331)
..... +.. .++++++|+++++.||+|||||||||||+|+||+..+ .++++++|.+|+++||||+||+||++++++
T Consensus 85 g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p-~~e~~~aL~~l~~~G~ir~iG~S~~~~~~i 163 (316)
T COG0667 85 GYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETP-IEETLEALDELVREGKIRYIGVSNYSAEQI 163 (316)
T ss_pred ccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCC-HHHHHHHHHHHHHcCCeeEEEecCCCHHHH
Confidence 65543 221 5689999999999999999999999999999999888 799999999999999999999999999999
Q ss_pred HHHHHcCCCeeeecccccccccChhhhHHHHHHHhCCeEEEccccccccccccccCCCCCCCCCCCCCCC-chhHHHHhh
Q 020082 154 RIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNT-PSLQKYKRM 232 (331)
Q Consensus 154 ~~~~~~~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l~~G~L~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 232 (331)
.++.+...+++++|.+||+++|..+.+++++|+++||++++|+||++|+|+|++... +. +.+... +....
T Consensus 164 ~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~----~~-~~r~~~~~~~~~---- 234 (316)
T COG0667 164 AEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPG----PE-GSRASELPRFQR---- 234 (316)
T ss_pred HHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCC----cc-hhhccccccchh----
Confidence 999885358999999999999888878999999999999999999999999998863 11 111111 10000
Q ss_pred hhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeecccCCcHhHHHHhhchhcCCCCHHHHHHHHHHh
Q 020082 233 VDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVT 312 (331)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~ia~~~g~s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~~~a~~~~L~~~~~~~l~~~~ 312 (331)
...+...+++..++++|+++|+||+|+||+|++++|.|+++|+|+++ ++||++|+++++..|++++++.|++..
T Consensus 235 ----~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~--~~qL~en~~A~~~~L~~~~~~~l~~~~ 308 (316)
T COG0667 235 ----ELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASK--AEQLEENLAALDIKLSEEELAALDEIS 308 (316)
T ss_pred ----hhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCC--HHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 12256778889999999999999999999999999999999999999 999999999999999999999999888
Q ss_pred hcC
Q 020082 313 KKG 315 (331)
Q Consensus 313 ~~~ 315 (331)
...
T Consensus 309 ~~~ 311 (316)
T COG0667 309 AEE 311 (316)
T ss_pred hhc
Confidence 643
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=1.7e-61 Score=432.89 Aligned_cols=300 Identities=22% Similarity=0.324 Sum_probs=255.6
Q ss_pred cccceeeeccccCCCCCC-chhhHHHHHHHHHHHhhhcCCccEEECCC----CchHHHHHHHHhhhhcCCCccchheeee
Q 020082 3 SVERDVADEWRVGPYRPG-RRRRCHASLRRCRSHHLRHGRSLSFDFVD----GPAEDLYGIFINRVRRERPPEFLDKVRG 77 (331)
Q Consensus 3 ~vS~l~lGt~~~g~~~~~-~~~~~~~~l~~al~~~~~~GGin~~DTA~----g~sE~~lG~~l~~~~~~~~~~~~~~~~~ 77 (331)
.||++|||||.+.+|+.. +++++.++++.|+++ ||||||||+ |.||.++|+++++.+..|. .+++++|+
T Consensus 23 ~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~-----Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~-~vviaTK~ 96 (336)
T KOG1575|consen 23 KVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEA-----GINFFDTAEVYGNGQSEELLGEFIKSRGWRRD-KVVIATKF 96 (336)
T ss_pred eecceeecceeeeccccCCCHHHHHHHHHHHHHc-----CCCEEehhhhcCCcccHHHHHHHHHhcCCcCC-cEEEEEEE
Confidence 599999999866565555 889999999999554 499999999 6899999999999765554 56666555
Q ss_pred cc-cccCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHH
Q 020082 78 LT-KWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII 156 (331)
Q Consensus 78 ~~-k~~~~~~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~ 156 (331)
+. ...+.+.+.+..++...++.||+|||+|||||||+||+|+..| +++++++|.+++++|||+|||+|++++++++++
T Consensus 97 ~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~p-iee~m~aL~~lve~Gki~yiGlSe~sa~~I~~a 175 (336)
T KOG1575|consen 97 GFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVP-IEETMRALTDLVEQGKIRYWGLSEWSAEEIREA 175 (336)
T ss_pred eccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCC-HHHHHHHHHHHHhcCceEEEEeccCCHHHHHHH
Confidence 43 3233356789999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred HHcC-CCeeeecccccccccCh-hhhHHHHHHHhCCeEEEccccccccccccccCCCCCCCCCCCCCCCchhHHHHhhhh
Q 020082 157 LENG-IPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVD 234 (331)
Q Consensus 157 ~~~~-~~~~~vq~~~nl~~~~~-~~~~~~~~~~~gi~via~~~l~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (331)
.... +|++++|++||++.|.. ++++++.|++.||++++|+||++|+|||+|... ...+.+..++....+. .
T Consensus 176 ~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~-e~~~~~~~~~~~~~~~------~ 248 (336)
T KOG1575|consen 176 HAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLG-EDSRNGDKRFQFLGLS------P 248 (336)
T ss_pred HHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCcccc-cccccccccccccccc------c
Confidence 9853 67999999999999985 456999999999999999999999999999875 3444444333322211 1
Q ss_pred ccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeecccCCcHhHHHHhhchhcCCCCHHHHHHHHHHhhc
Q 020082 235 AWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKK 314 (331)
Q Consensus 235 ~~~~~~~~~~~~~~l~~ia~~~g~s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~~~a~~~~L~~~~~~~l~~~~~~ 314 (331)
++...++++.+++++.++|+++|+|++|+||+|+++++.+++||||+++ ++||+||++|+.+.|+++++.+|+++...
T Consensus 249 ~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~--ve~l~eni~Al~~~Lt~e~~~~l~~~~~~ 326 (336)
T KOG1575|consen 249 QTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASK--IEQLKENIGALSVKLTPEEIKELEEIIDK 326 (336)
T ss_pred ccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCc--HHHHHHHHhhhhccCCHHHHHHHHHhhcc
Confidence 1111156788999999999999999999999999999999999999999 99999999999999999999999999977
Q ss_pred CCCC
Q 020082 315 GKDL 318 (331)
Q Consensus 315 ~~~~ 318 (331)
....
T Consensus 327 ~~~~ 330 (336)
T KOG1575|consen 327 ILGF 330 (336)
T ss_pred ccCc
Confidence 6543
No 3
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=7.7e-56 Score=407.14 Aligned_cols=293 Identities=17% Similarity=0.230 Sum_probs=230.2
Q ss_pred cccceeeecccc-CCCCCCchhhHHHHHHHHHHHhhhcCCccEEECCC----CchHHHHHHHHhhhhcCCCccchheeee
Q 020082 3 SVERDVADEWRV-GPYRPGRRRRCHASLRRCRSHHLRHGRSLSFDFVD----GPAEDLYGIFINRVRRERPPEFLDKVRG 77 (331)
Q Consensus 3 ~vS~l~lGt~~~-g~~~~~~~~~~~~~l~~al~~~~~~GGin~~DTA~----g~sE~~lG~~l~~~~~~~~~~~~~~~~~ 77 (331)
.||+||||||++ |. ..+.+++.++|+.|++. ||||||||+ |.||++||++|+..+..+. .+++.+|+
T Consensus 10 ~vs~lglGt~~~~g~--~~~~~~a~~~l~~al~~-----Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~-~~~iaTK~ 81 (317)
T TIGR01293 10 RVSCLGLGTWVTFGG--QISDEMAEQLLTLAYEN-----GINLFDTAEVYAAGKAEVVLGNILKKKGWRRS-SYVITTKI 81 (317)
T ss_pred eecceeecCCccCCC--CCCHHHHHHHHHHHHHc-----CCCeEECccccCCCccHHHHHHHHHhcCCCcc-cEEEEeee
Confidence 589999999973 32 34667788888888655 599999999 5799999999986421222 45556664
Q ss_pred ccccc-CCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHH
Q 020082 78 LTKWV-PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII 156 (331)
Q Consensus 78 ~~k~~-~~~~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~ 156 (331)
..... +...+++++.+++++++||+||||||||+|++|||++..+ +++++++|++|+++||||+||+|||+.++++++
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~-~~e~~~aL~~l~~~G~ir~iGvSn~~~~~l~~~ 160 (317)
T TIGR01293 82 FWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTP-MEETVRAMTYVINQGMAMYWGTSRWSSMEIMEA 160 (317)
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCC-HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHH
Confidence 32111 1123568999999999999999999999999999998777 889999999999999999999999999998876
Q ss_pred HH----cC-CCeeeecccccccccCh-hhhHHHHHHHhCCeEEEccccccccccccccCCCCCCCCCCCCCCCchhHHHH
Q 020082 157 LE----NG-IPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYK 230 (331)
Q Consensus 157 ~~----~~-~~~~~vq~~~nl~~~~~-~~~~~~~~~~~gi~via~~~l~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (331)
.. .+ ++++++|++||++++.. +.+++++|+++||++++|+||++|+|+|++... .|.+. +...+.+.++.
T Consensus 161 ~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~---~~~~~-~~~~~~~~~~~ 236 (317)
T TIGR01293 161 YSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSG---IPPYS-RATLKGYQWLK 236 (317)
T ss_pred HHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCC---CCCcc-cccccccchhh
Confidence 53 23 57889999999999874 668999999999999999999999999988542 12211 10000000000
Q ss_pred hhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeecccCCcHhHHHHhhchhcC--CCCHHHHHHH
Q 020082 231 RMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFML--SLDEDDVNSI 308 (331)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~~~a~~~--~L~~~~~~~l 308 (331)
... ...........++.++++|+++|+|++|+||+|++++|.|+++|+|+++ ++||++|+++++. +||++++++|
T Consensus 237 ~~~-~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~--~~ql~en~~a~~~~~~Ls~e~~~~l 313 (317)
T TIGR01293 237 DKI-LSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASS--AEQLMENLGSLQVLPKLSSSIIHEI 313 (317)
T ss_pred hhh-cchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCC--HHHHHHHHHHhhccCCCCHHHHHHH
Confidence 000 0001123456678999999999999999999999999999999999999 9999999999987 9999999999
Q ss_pred HHH
Q 020082 309 QEV 311 (331)
Q Consensus 309 ~~~ 311 (331)
+++
T Consensus 314 ~~~ 316 (317)
T TIGR01293 314 DSI 316 (317)
T ss_pred Hhh
Confidence 875
No 4
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=7.1e-55 Score=404.82 Aligned_cols=293 Identities=19% Similarity=0.291 Sum_probs=231.5
Q ss_pred cccceeeeccc-cCCCCCCchhhHHHHHHHHHHHhhhcCCccEEECCC--C----chHHHHHHHHhhhh-cCCCccchhe
Q 020082 3 SVERDVADEWR-VGPYRPGRRRRCHASLRRCRSHHLRHGRSLSFDFVD--G----PAEDLYGIFINRVR-RERPPEFLDK 74 (331)
Q Consensus 3 ~vS~l~lGt~~-~g~~~~~~~~~~~~~l~~al~~~~~~GGin~~DTA~--g----~sE~~lG~~l~~~~-~~~~~~~~~~ 74 (331)
.||+||||||+ +|. ..+.+++.++|+.|++. ||||||||+ | .||++||++|++.. ..|. .+++.
T Consensus 24 ~vs~lglG~~~~~g~--~~~~~~~~~~l~~A~~~-----Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~~Rd-~~~I~ 95 (346)
T PRK09912 24 RLPALSLGLWHNFGH--VNALESQRAILRKAFDL-----GITHFDLANNYGPPPGSAEENFGRLLREDFAAYRD-ELIIS 95 (346)
T ss_pred ccccccccCccccCC--CCCHHHHHHHHHHHHHC-----CCCEEEChhhhCCCCCCcHHHHHHHHHhcccCCCC-eEEEE
Confidence 58999999996 453 23456677888888554 599999999 5 49999999998631 1122 56666
Q ss_pred eeecccccCC--CCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHH
Q 020082 75 VRGLTKWVPP--PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTER 152 (331)
Q Consensus 75 ~~~~~k~~~~--~~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~ 152 (331)
+|+....++. +.+.+++++++++++||+||||||||+|++|+|++..+ +++++++|++|+++|||++||||||++++
T Consensus 96 TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~-~~e~~~al~~l~~~GkIr~iGvSn~~~~~ 174 (346)
T PRK09912 96 TKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTP-MEETASALAHAVQSGKALYVGISSYSPER 174 (346)
T ss_pred EEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCC-HHHHHHHHHHHHHcCCeeEEEecCCCHHH
Confidence 6654322222 22468999999999999999999999999999998777 89999999999999999999999999999
Q ss_pred HHHHHH----cCCCeeeecccccccccChh-hhHHHHHHHhCCeEEEccccccccccccccCCCCCCCCCCCCCCC-c-h
Q 020082 153 LRIILE----NGIPVVSNQVQHSVVDMRPQ-QKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNT-P-S 225 (331)
Q Consensus 153 l~~~~~----~~~~~~~vq~~~nl~~~~~~-~~~~~~~~~~gi~via~~~l~~G~L~g~~~~~~~~~~~~~~~~~~-~-~ 225 (331)
++++.+ .+++++++|++||++++..+ .+++++|+++||++++|+||++|+|++++.... |.+ .+... + .
T Consensus 175 ~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~~---~~~-~~~~~~~~~ 250 (346)
T PRK09912 175 TQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNGI---PQD-SRMHREGNK 250 (346)
T ss_pred HHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCCCC---CCC-ccccccccc
Confidence 876654 24678999999999998754 479999999999999999999999999885432 211 11100 0 0
Q ss_pred hHHHHhhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeecccCCcHhHHHHhhchhc-CCCCHHH
Q 020082 226 LQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFM-LSLDEDD 304 (331)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~~~a~~-~~L~~~~ 304 (331)
...+. ..+ ..+...++.+.++++|+++|+|++|+||+|++++|.|+++|+|+++ ++||++|++++. .+|++++
T Consensus 251 ~~~~~---~~~-~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~--~~ql~en~~a~~~~~L~~e~ 324 (346)
T PRK09912 251 VRGLT---PKM-LTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASR--AEQLEENVQALNNLTFSTEE 324 (346)
T ss_pred hhhhc---hhh-ccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCC--HHHHHHHHhhhcCCCCCHHH
Confidence 00000 000 0134456678999999999999999999999999999999999999 999999999984 7999999
Q ss_pred HHHHHHHhhc
Q 020082 305 VNSIQEVTKK 314 (331)
Q Consensus 305 ~~~l~~~~~~ 314 (331)
+++|+++.++
T Consensus 325 ~~~l~~~~~~ 334 (346)
T PRK09912 325 LAQIDQHIAD 334 (346)
T ss_pred HHHHHHhhCc
Confidence 9999999865
No 5
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=5.7e-54 Score=399.33 Aligned_cols=289 Identities=21% Similarity=0.323 Sum_probs=229.9
Q ss_pred cccceeeeccccCCCCCCchhhHHHHHHHHHHHhhhcCCccEEECCC--C---------chHHHHHHHHhhhh-cCCCcc
Q 020082 3 SVERDVADEWRVGPYRPGRRRRCHASLRRCRSHHLRHGRSLSFDFVD--G---------PAEDLYGIFINRVR-RERPPE 70 (331)
Q Consensus 3 ~vS~l~lGt~~~g~~~~~~~~~~~~~l~~al~~~~~~GGin~~DTA~--g---------~sE~~lG~~l~~~~-~~~~~~ 70 (331)
.||+||||||.||. ..+.+++.++|+.|++. ||||||||+ | .||..||++|++.+ |+ .
T Consensus 12 ~vs~iglGt~~~g~--~~~~~~a~~~l~~al~~-----Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~~~R~---~ 81 (346)
T PRK10625 12 EVSTLGLGTMTFGE--QNSEADAHAQLDYAVAQ-----GINLIDVAEMYPVPPRPETQGLTETYIGNWLAKRGSRE---K 81 (346)
T ss_pred ccccEeEeccccCC--CCCHHHHHHHHHHHHHc-----CCCEEECccccCCCcCCCCCCchHHHHHHHHhhcCCcc---e
Confidence 48999999999985 34567888888888554 599999998 4 39999999998532 33 4
Q ss_pred chheeeecccccC------CCCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCC-----------------CchHHHH
Q 020082 71 FLDKVRGLTKWVP------PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-----------------NPGYLDA 127 (331)
Q Consensus 71 ~~~~~~~~~k~~~------~~~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~-----------------~~~~~e~ 127 (331)
+++++|+...... ...+++++.+++++++||+||||||||||++|||++. .+ ++++
T Consensus 82 v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~-~~e~ 160 (346)
T PRK10625 82 LIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS-LLET 160 (346)
T ss_pred EEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC-HHHH
Confidence 5555554211100 1124689999999999999999999999999999752 33 7899
Q ss_pred HHHHHHHHHcCcccEEecCcccHHHHHHHHH----cCC-CeeeecccccccccChhhhHHHHHHHhCCeEEEcccccccc
Q 020082 128 LNHLTDLKEEGKIKTVALTNFDTERLRIILE----NGI-PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGL 202 (331)
Q Consensus 128 ~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~----~~~-~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l~~G~ 202 (331)
|++|++|+++|||++||+|||+.++++++.. .+. .++++|++||++++..+.+++++|+++||++++|+||++|+
T Consensus 161 ~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL~~G~ 240 (346)
T PRK10625 161 LDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLAFGT 240 (346)
T ss_pred HHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccccCee
Confidence 9999999999999999999999998877653 233 58899999999998877789999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeeccc
Q 020082 203 LSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVR 282 (331)
Q Consensus 203 L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aq~Al~~~l~~~~v~~~i~G~~ 282 (331)
|+|++.... .|.+ .+ ...+..+. .+ ......++.+.++++|+++|+|++|+||+|++++|.|+++|+|++
T Consensus 241 Ltg~~~~~~--~~~~-~~--~~~~~~~~----~~-~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~ 310 (346)
T PRK10625 241 LTGKYLNGA--KPAG-AR--NTLFSRFT----RY-SGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGAT 310 (346)
T ss_pred ccCCCCCCC--CCCC-cc--cccccccc----cc-cchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCC
Confidence 999875432 1211 11 00000010 00 113455677899999999999999999999999999999999999
Q ss_pred CCcHhHHHHhhchhcCCCCHHHHHHHHHHhhc
Q 020082 283 LGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKK 314 (331)
Q Consensus 283 ~~~~~~l~e~~~a~~~~L~~~~~~~l~~~~~~ 314 (331)
+ ++||++|+++++.+|++++++.|+++...
T Consensus 311 ~--~~~l~en~~a~~~~L~~~~~~~l~~~~~~ 340 (346)
T PRK10625 311 T--MEQLKTNIESLHLTLSEEVLAEIEAVHQV 340 (346)
T ss_pred C--HHHHHHHHhhccCCCCHHHHHHHHHHHhh
Confidence 9 99999999999999999999999999753
No 6
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=7.3e-54 Score=388.63 Aligned_cols=275 Identities=27% Similarity=0.458 Sum_probs=223.9
Q ss_pred ceeeeccccCCCCCCchhhHHHHHHHHHHHhhhcCCccEEECCC----CchHHHHHHHHhh--hhcCCCccchheeeecc
Q 020082 6 RDVADEWRVGPYRPGRRRRCHASLRRCRSHHLRHGRSLSFDFVD----GPAEDLYGIFINR--VRRERPPEFLDKVRGLT 79 (331)
Q Consensus 6 ~l~lGt~~~g~~~~~~~~~~~~~l~~al~~~~~~GGin~~DTA~----g~sE~~lG~~l~~--~~~~~~~~~~~~~~~~~ 79 (331)
+||||||++|.. ..+.+++.++++.|++. |||+||||+ |.||++||++|+. .+|+ .+++.+|+ .
T Consensus 1 ~l~lG~~~~~~~-~~~~~~~~~~l~~a~~~-----Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~---~~~i~tK~-~ 70 (283)
T PF00248_consen 1 PLGLGTWRLGGE-RVSEEEAEAILRRALEA-----GINFFDTADSYGNGRSERILGRALRKSRVPRD---DIFISTKV-Y 70 (283)
T ss_dssp SBEEECTTBTTT-TSTHHHHHHHHHHHHHT-----T--EEEECGGGGGGTHHHHHHHHHHHTSSTGG---GSEEEEEE-E
T ss_pred CEEEEccccCCC-CCCHHHHHHHHHHHHHc-----CCCeeccccccccccccccccccccccccccc---cccccccc-c
Confidence 689999999765 66778899999888655 599999998 7999999999998 3444 45555555 1
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHc
Q 020082 80 KWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN 159 (331)
Q Consensus 80 k~~~~~~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~ 159 (331)
........++++.+++++++||+|||+||||+|++|+|+......+++|++|++|+++||||+||||||++++++++...
T Consensus 71 ~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 150 (283)
T PF00248_consen 71 GDGKPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKI 150 (283)
T ss_dssp SSSSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTC
T ss_pred ccccccccccccccccccccccccccccchhccccccccccccccchhhhhhhhcccccccccccccccccccccccccc
Confidence 11223346799999999999999999999999999999987765789999999999999999999999999999999654
Q ss_pred -CCCeeeecccccccccChhhhHHHHHHHhCCeEEEccccccccccccccCCCCCCCCCCCCCCCchhHHHHhhhhccCC
Q 020082 160 -GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGG 238 (331)
Q Consensus 160 -~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (331)
.++|+++|++||++++...++++++|+++||++++|+|+++|+|++++.......+....
T Consensus 151 ~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~------------------- 211 (283)
T PF00248_consen 151 GSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASL------------------- 211 (283)
T ss_dssp TSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGS-------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccCccccccccCCCccccccc-------------------
Confidence 368999999999997778889999999999999999999999999987654321111100
Q ss_pred chhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeecccCCcHhHHHHhhchhcCCCCHHHHHHHHHHh
Q 020082 239 WSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVT 312 (331)
Q Consensus 239 ~~~~~~~~~~l~~ia~~~g~s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~~~a~~~~L~~~~~~~l~~~~ 312 (331)
.......+.+.++++++|+|++|+||+|+++++.++++|+|+++ ++||++|+++++.+||++++++|+++.
T Consensus 212 -~~~~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~--~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 212 -RDAQELADALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASS--PEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp -STHGGGHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SS--HHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred -chhhhhhhhhhhhhhhcccccchhhhhhhhhccccccccCCCCC--HHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 01234458999999999999999999999999999999999999 999999999998899999999999875
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=2.9e-53 Score=389.68 Aligned_cols=277 Identities=17% Similarity=0.263 Sum_probs=224.4
Q ss_pred cccceeeeccccCC-CCCCchhhHHHHHHHHHHHhhhcCCccEEECCC----CchHHHHHHHHhhhhcCCCccchheeee
Q 020082 3 SVERDVADEWRVGP-YRPGRRRRCHASLRRCRSHHLRHGRSLSFDFVD----GPAEDLYGIFINRVRRERPPEFLDKVRG 77 (331)
Q Consensus 3 ~vS~l~lGt~~~g~-~~~~~~~~~~~~l~~al~~~~~~GGin~~DTA~----g~sE~~lG~~l~~~~~~~~~~~~~~~~~ 77 (331)
.||+||||||+||. |+..+.+++.++++.|++. ||||||||+ |.||+.+|++|++.+..|. .+++++|+
T Consensus 10 ~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~-----Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~-~v~I~TK~ 83 (314)
T PLN02587 10 KVSSVGFGASPLGSVFGPVSEEDAIASVREAFRL-----GINFFDTSPYYGGTLSEKVLGKALKALGIPRE-KYVVSTKC 83 (314)
T ss_pred cccCcccccccccCCCCCCCHHHHHHHHHHHHHc-----CCCEEECcCccCCCchHHHHHHHHHhCCCCcc-eEEEEecc
Confidence 58999999999984 6666778888888888655 599999999 5599999999987532232 44444444
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCc--hHHHHHHHHHHHHHcCcccEEecCcccHHHHHH
Q 020082 78 LTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNP--GYLDALNHLTDLKEEGKIKTVALTNFDTERLRI 155 (331)
Q Consensus 78 ~~k~~~~~~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~--~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~ 155 (331)
.. + +.+.+++++.+++++++||+||||||||+|++|+|+...+ .++++|++|++|+++||||+||+|||++++++.
T Consensus 84 ~~-~-~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~ 161 (314)
T PLN02587 84 GR-Y-GEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLPLAIFTY 161 (314)
T ss_pred cc-C-CCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHH
Confidence 31 1 1223568999999999999999999999999999975321 257899999999999999999999999998877
Q ss_pred HHHc---C-CCeeeecccccccccChhhhHHHHHHHhCCeEEEccccccccccccccCCCCCCCCCCCCCCCchhHHHHh
Q 020082 156 ILEN---G-IPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKR 231 (331)
Q Consensus 156 ~~~~---~-~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (331)
+.+. + +.+..+|+.||+.++.. .+++++|+++||++++|+||++|+|+++.... ..+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~-----------~~~------- 222 (314)
T PLN02587 162 VLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTENGPPE-----------WHP------- 222 (314)
T ss_pred HHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCCCCCC-----------CCC-------
Confidence 7642 2 34556789999987644 48999999999999999999999999863210 000
Q ss_pred hhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeecccCCcHhHHHHhhchhcC----CCCHHHHHH
Q 020082 232 MVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFML----SLDEDDVNS 307 (331)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~~~a~~~----~L~~~~~~~ 307 (331)
..+....+++.++++|+++|+|++|+||+|++++|.|+++|+|+++ ++||++|+++.+. +|+++++++
T Consensus 223 ------~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~--~~~l~~nl~a~~~~~~~~l~~~~~~~ 294 (314)
T PLN02587 223 ------APPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNS--VQQVEENVAAATELETSGIDEELLSE 294 (314)
T ss_pred ------CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCC--HHHHHHHHHHHhhcccCCCCHHHHHH
Confidence 0123445678899999999999999999999999999999999999 9999999999763 799999999
Q ss_pred HHHHhhc
Q 020082 308 IQEVTKK 314 (331)
Q Consensus 308 l~~~~~~ 314 (331)
|+++...
T Consensus 295 l~~~~~~ 301 (314)
T PLN02587 295 VEAILAP 301 (314)
T ss_pred HHHhhcc
Confidence 9999864
No 8
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=1e-53 Score=375.98 Aligned_cols=250 Identities=20% Similarity=0.272 Sum_probs=215.7
Q ss_pred ccceeeeccccCCCCCCchhhHHHHHHHHHHHhhhcCCccEEECCC-CchHHHHHHHHhhhhcCCCccchheeeeccccc
Q 020082 4 VERDVADEWRVGPYRPGRRRRCHASLRRCRSHHLRHGRSLSFDFVD-GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWV 82 (331)
Q Consensus 4 vS~l~lGt~~~g~~~~~~~~~~~~~l~~al~~~~~~GGin~~DTA~-g~sE~~lG~~l~~~~~~~~~~~~~~~~~~~k~~ 82 (331)
|+.||||||.++. .+.+.+.+++|++. |+++||||. +.+|+.+|+++++.. ..+..+|+.||.+
T Consensus 14 iP~iGlGt~~~~~-----~~~~~~av~~Al~~-----Gyr~IDTA~~YgnE~~VG~aI~~s~-----v~ReelFittKvw 78 (280)
T COG0656 14 IPAIGLGTWQIGD-----DEWAVRAVRAALEL-----GYRLIDTAEIYGNEEEVGEAIKESG-----VPREELFITTKVW 78 (280)
T ss_pred ccCcceEeeecCC-----chhHHHHHHHHHHh-----CcceEecHhHhcCHHHHHHHHHhcC-----CCHHHeEEEeecC
Confidence 7899999998754 12267777777665 599999999 669999999999832 2334778888888
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCC-CchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHc-C
Q 020082 83 PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-G 160 (331)
Q Consensus 83 ~~~~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~-~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~-~ 160 (331)
+.. ..++.+.+++++||+|||+||+|||+||||.+. ...+.|+|++|++++++||||+||||||+...++++++. +
T Consensus 79 ~~~--~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~~~ 156 (280)
T COG0656 79 PSD--LGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNFGVEHLEELLSLAK 156 (280)
T ss_pred Ccc--CCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHhcC
Confidence 773 478999999999999999999999999999763 111679999999999999999999999999999999985 4
Q ss_pred CCeeeecccccccccChhhhHHHHHHHhCCeEEEcccccccc-ccccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCc
Q 020082 161 IPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGL-LSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGW 239 (331)
Q Consensus 161 ~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l~~G~-L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (331)
+.|++||++||+..+..+ ++++|+++||.+++|+||+.|. |..
T Consensus 157 ~~p~~NQIe~hp~~~q~e--l~~~~~~~gI~v~AysPL~~g~~l~~---------------------------------- 200 (280)
T COG0656 157 VKPAVNQIEYHPYLRQPE--LLPFCQRHGIAVEAYSPLAKGGKLLD---------------------------------- 200 (280)
T ss_pred CCCceEEEEeccCCCcHH--HHHHHHHcCCEEEEECCccccccccc----------------------------------
Confidence 789999999999988764 9999999999999999999653 211
Q ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeecccCCcHhHHHHhhchhcCCCCHHHHHHHHHHhhcCC
Q 020082 240 SQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGK 316 (331)
Q Consensus 240 ~~~~~~~~~l~~ia~~~g~s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~~~a~~~~L~~~~~~~l~~~~~~~~ 316 (331)
.+.+..||++||.|++|++|+|.++++ ..+||.+++ ++|+++|++++++.||++|++.|+.+.....
T Consensus 201 ------~~~l~~Ia~k~g~t~AQv~L~W~i~~g--v~~Ipks~~--~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~ 267 (280)
T COG0656 201 ------NPVLAEIAKKYGKTPAQVALRWHIQRG--VIVIPKSTT--PERIRENLAAFDFELSEEDMAAIDALDRGYG 267 (280)
T ss_pred ------ChHHHHHHHHhCCCHHHHHHHHHHhCC--cEEecCCCC--HHHHHHHHhhhcCCCCHHHHHHHHhhccccC
Confidence 068999999999999999999999998 568888888 9999999999999999999999999997764
No 9
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=5.1e-53 Score=382.97 Aligned_cols=266 Identities=17% Similarity=0.115 Sum_probs=216.7
Q ss_pred cccceeeeccccCC--------CCCCchhhHHHHHHHHHHHhhhcCCccEEECCC--CchHHHHHHHHhhhhcCCCccch
Q 020082 3 SVERDVADEWRVGP--------YRPGRRRRCHASLRRCRSHHLRHGRSLSFDFVD--GPAEDLYGIFINRVRRERPPEFL 72 (331)
Q Consensus 3 ~vS~l~lGt~~~g~--------~~~~~~~~~~~~l~~al~~~~~~GGin~~DTA~--g~sE~~lG~~l~~~~~~~~~~~~ 72 (331)
.||+||||||+||. |+..+.+++.++|+.|++. ||||||||+ |.||..+|++|++. + +. .++
T Consensus 4 ~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~-----Gin~~DTA~~YG~SE~~lG~al~~~-~-~~-~~~ 75 (292)
T PRK14863 4 PVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARA-----GLSVLDASGLFGRAETVLGQLIPRP-V-PF-RVT 75 (292)
T ss_pred cceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHc-----CCCEEecchhhhhHHHHHhhhhccC-C-ce-Eee
Confidence 59999999999984 4566888899999999655 599999999 88999999999741 1 11 233
Q ss_pred heeeecccccCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCC-CchHHHHHHHHHHHHHcCcccEEecCcccHH
Q 020082 73 DKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFDTE 151 (331)
Q Consensus 73 ~~~~~~~k~~~~~~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~-~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~ 151 (331)
+++ |. + +.+++.+++++++||+||||||||+|++|+|++. .+..+++|++|++|+++||||+||||||+++
T Consensus 76 i~t----k~-~---~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~ 147 (292)
T PRK14863 76 LST----VR-A---DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASD 147 (292)
T ss_pred ccc----cc-c---cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHH
Confidence 333 32 1 2368999999999999999999999999999763 3323679999999999999999999999999
Q ss_pred HHHHHHHcCCCeeeecccccccccChh-hhHHHHHHHhCCeEEEccccccccccccccCCCCCCCCCCCCCCCchhHHHH
Q 020082 152 RLRIILENGIPVVSNQVQHSVVDMRPQ-QKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYK 230 (331)
Q Consensus 152 ~l~~~~~~~~~~~~vq~~~nl~~~~~~-~~~~~~~~~~gi~via~~~l~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (331)
++.++.. ..+|+++|++||++++..+ .+++++|+++||++++|+||++|+|++.... .+ ..+
T Consensus 148 ~~~~~~~-~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~~----~~--------~~~---- 210 (292)
T PRK14863 148 DPVGVAR-RFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPDR----VP--------AQL---- 210 (292)
T ss_pred HHHHHHh-cCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCccc----Cc--------cch----
Confidence 9888765 3589999999999998764 4699999999999999999999999642100 00 000
Q ss_pred hhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeecccCCcHhHHHHhhchhcCCCCHHHHHHHHH
Q 020082 231 RMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQE 310 (331)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~~~a~~~~L~~~~~~~l~~ 310 (331)
......+..+.+++.+++++++|+||+|++++|.|+++|+|+++ ++||++|+++.+.+++++.+.+|..
T Consensus 211 ---------~~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~--~~ql~~n~~a~~~~~~~~~~~~l~~ 279 (292)
T PRK14863 211 ---------KGASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNS--AAELSAVVAAASSPPPDLDWDDMAI 279 (292)
T ss_pred ---------hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCC--HHHHHHHHHHHhcCCCccchhhccC
Confidence 01123456788888889999999999999999999999999999 9999999999998999988877764
Q ss_pred Hh
Q 020082 311 VT 312 (331)
Q Consensus 311 ~~ 312 (331)
-.
T Consensus 280 ~~ 281 (292)
T PRK14863 280 DD 281 (292)
T ss_pred Ch
Confidence 43
No 10
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=3.9e-52 Score=373.44 Aligned_cols=249 Identities=16% Similarity=0.240 Sum_probs=209.4
Q ss_pred cccceeeeccccCCCCCCchhhHHHHHHHHHHHhhhcCCccEEECCC-CchHHHHHHHHhhhhcCCCccchheeeecccc
Q 020082 3 SVERDVADEWRVGPYRPGRRRRCHASLRRCRSHHLRHGRSLSFDFVD-GPAEDLYGIFINRVRRERPPEFLDKVRGLTKW 81 (331)
Q Consensus 3 ~vS~l~lGt~~~g~~~~~~~~~~~~~l~~al~~~~~~GGin~~DTA~-g~sE~~lG~~l~~~~~~~~~~~~~~~~~~~k~ 81 (331)
.||+||||||+++ .+++.++++.|++. ||||||||+ +.+|..||++|++.+..|. .+++.+| .
T Consensus 2 ~vs~lglGt~~~~------~~~~~~~i~~A~~~-----Gi~~~DTA~~Yg~E~~lG~al~~~~~~R~-~v~i~TK----~ 65 (267)
T PRK11172 2 SIPAFGLGTFRLK------DQVVIDSVKTALEL-----GYRAIDTAQIYDNEAAVGQAIAESGVPRD-ELFITTK----I 65 (267)
T ss_pred CCCCEeeEccccC------hHHHHHHHHHHHHc-----CCCEEEccchhCCHHHHHHHHHHcCCChh-HeEEEEE----e
Confidence 5999999999764 25677777777554 599999999 5589999999986321222 3444444 3
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCC--CchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHc
Q 020082 82 VPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS--NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN 159 (331)
Q Consensus 82 ~~~~~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~--~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~ 159 (331)
++. +.+++.+++++++||+|||+||||+|++|+|++. .+ .+++|++|++|+++||||+||||||+.++++++++.
T Consensus 66 ~~~--~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~-~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~ 142 (267)
T PRK11172 66 WID--NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVS-VEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAA 142 (267)
T ss_pred CCC--CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCC-HHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHh
Confidence 332 3579999999999999999999999999999763 34 689999999999999999999999999999998874
Q ss_pred -CC-CeeeecccccccccChhhhHHHHHHHhCCeEEEccccccccccccccCCCCCCCCCCCCCCCchhHHHHhhhhccC
Q 020082 160 -GI-PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWG 237 (331)
Q Consensus 160 -~~-~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (331)
+. +++++|++||++++. .+++++|+++||++++|+||++|.+...
T Consensus 143 ~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~~~------------------------------- 189 (267)
T PRK11172 143 VGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVLKD------------------------------- 189 (267)
T ss_pred cCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCcccCC-------------------------------
Confidence 33 689999999998864 5899999999999999999999854210
Q ss_pred CchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeecccCCcHhHHHHhhchhcCCCCHHHHHHHHHHhhcCC
Q 020082 238 GWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGK 316 (331)
Q Consensus 238 ~~~~~~~~~~~l~~ia~~~g~s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~~~a~~~~L~~~~~~~l~~~~~~~~ 316 (331)
+.++++|+++|+|++|+||+|+++++. ++|+|+++ ++||++|+++++.+||++++++|+++....+
T Consensus 190 ---------~~l~~~a~~~~~s~aqval~w~l~~~~--~~i~g~~~--~~~l~~n~~~~~~~L~~~~~~~i~~~~~~~~ 255 (267)
T PRK11172 190 ---------PVIARIAAKHNATPAQVILAWAMQLGY--SVIPSSTK--RENLASNLLAQDLQLDAEDMAAIAALDRNGR 255 (267)
T ss_pred ---------HHHHHHHHHhCCCHHHHHHHHHHhCCC--EeecCCCC--HHHHHHHHhhcCCCcCHHHHHHHhhhccCCc
Confidence 468899999999999999999999963 58999999 9999999999999999999999999986543
No 11
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.6e-50 Score=367.14 Aligned_cols=269 Identities=28% Similarity=0.479 Sum_probs=226.7
Q ss_pred cccceeeeccccCCCCCCchhhHHHHHHHHHHHhhhcCCccEEECCC----CchHHHHHHHHhhhh-cCCCccchheeee
Q 020082 3 SVERDVADEWRVGPYRPGRRRRCHASLRRCRSHHLRHGRSLSFDFVD----GPAEDLYGIFINRVR-RERPPEFLDKVRG 77 (331)
Q Consensus 3 ~vS~l~lGt~~~g~~~~~~~~~~~~~l~~al~~~~~~GGin~~DTA~----g~sE~~lG~~l~~~~-~~~~~~~~~~~~~ 77 (331)
.||+||||||.+|... .+.+++.++++.|++. |||+||||+ |.||+.+|++|++.+ |+ .+++.+|+
T Consensus 10 ~vs~lg~G~~~~~~~~-~~~~~~~~~l~~A~~~-----Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~---~~~i~tK~ 80 (285)
T cd06660 10 KVSRLGLGTWQLGGGY-VDEEEAAAAVRAALDA-----GINFIDTADVYGDGESEELLGEALKERGPRE---EVFIATKV 80 (285)
T ss_pred eecCcceeccccCCCC-CCHHHHHHHHHHHHHc-----CCCeEECccccCCCCCHHHHHHHHhccCCcC---cEEEEeee
Confidence 5899999999886422 5677888888888655 599999999 449999999999875 43 44455554
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHH
Q 020082 78 LTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 157 (331)
Q Consensus 78 ~~k~~~~~~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~ 157 (331)
...... ..+++++.+++++++||++||+||||+|+||+|+.......++|++|+++|++||||+||||||+++.+.+++
T Consensus 81 ~~~~~~-~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~ 159 (285)
T cd06660 81 GPRPGD-GRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQLEEAL 159 (285)
T ss_pred cCCCCC-CCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHHHHHHHH
Confidence 432111 1346899999999999999999999999999998765547899999999999999999999999999999998
Q ss_pred HcC-CCeeeecccccccccChhhhHHHHHHHhCCeEEEccccccccccccccCCCCCCCCCCCCCCCchhHHHHhhhhcc
Q 020082 158 ENG-IPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAW 236 (331)
Q Consensus 158 ~~~-~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (331)
+.. .+|+++|++||++++..+.+++++|+++||++++|+||++|.|+++..... .. +.
T Consensus 160 ~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~--------~~--~~----------- 218 (285)
T cd06660 160 AAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGA--------PP--PE----------- 218 (285)
T ss_pred HhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCC--------CC--Ch-----------
Confidence 752 689999999999998876689999999999999999999999986543211 00 00
Q ss_pred CCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeecccCCcHhHHHHhhchhcCCCCHHHHHHHHH
Q 020082 237 GGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQE 310 (331)
Q Consensus 237 ~~~~~~~~~~~~l~~ia~~~g~s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~~~a~~~~L~~~~~~~l~~ 310 (331)
......+..++.+++++++|+||+|++++|.++++|+|+++ ++||++|+++...+|++++++.|++
T Consensus 219 ------~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~--~~~l~~n~~~~~~~L~~~~~~~l~~ 284 (285)
T cd06660 219 ------GDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASS--PERLEENLAALDFELSDEDLAALDA 284 (285)
T ss_pred ------hhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCC--HHHHHHHHhhccCCCCHHHHHHHhh
Confidence 01347899999999999999999999999999999999999 9999999999988999999999986
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.4e-50 Score=367.70 Aligned_cols=258 Identities=15% Similarity=0.183 Sum_probs=212.8
Q ss_pred cccceeeeccccCC---CCCC-chhhHHHHHHHHHHHhhhcCCccEEECCC----CchHHHHHHHHhhhhcCCCccchhe
Q 020082 3 SVERDVADEWRVGP---YRPG-RRRRCHASLRRCRSHHLRHGRSLSFDFVD----GPAEDLYGIFINRVRRERPPEFLDK 74 (331)
Q Consensus 3 ~vS~l~lGt~~~g~---~~~~-~~~~~~~~l~~al~~~~~~GGin~~DTA~----g~sE~~lG~~l~~~~~~~~~~~~~~ 74 (331)
.||+||||||++|. |+.. +.+++.++++.|++. ||||||||+ |.||++||++++.. |+ .+++.
T Consensus 16 ~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~-----Gin~~DTA~~Yg~~~sE~~lg~~l~~~-R~---~~~i~ 86 (290)
T PRK10376 16 SVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVAL-----GVNHIDTSDFYGPHVTNQLIREALHPY-PD---DLTIV 86 (290)
T ss_pred eecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHc-----CCCeEEChhhcCCCcHHHHHHHHHhcC-CC---eEEEE
Confidence 58999999999963 5543 566788888888655 599999999 66899999999642 33 45555
Q ss_pred eeecccccC---CCCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCC----CCchHHHHHHHHHHHHHcCcccEEecCc
Q 020082 75 VRGLTKWVP---PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY----SNPGYLDALNHLTDLKEEGKIKTVALTN 147 (331)
Q Consensus 75 ~~~~~k~~~---~~~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~----~~~~~~e~~~~l~~l~~~Gkir~iGvS~ 147 (331)
+|+...... ...+.+++.+++++++||+||||||||+|++|+++. ....++++|++|++|+++||||+||+||
T Consensus 87 TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGvSn 166 (290)
T PRK10376 87 TKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGLSN 166 (290)
T ss_pred eeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEecC
Confidence 554321111 123568999999999999999999999999988521 1122689999999999999999999999
Q ss_pred ccHHHHHHHHHcCCCeeeecccccccccChhhhHHHHHHHhCCeEEEccccccccccccccCCCCCCCCCCCCCCCchhH
Q 020082 148 FDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQ 227 (331)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l~~G~L~g~~~~~~~~~~~~~~~~~~~~~~ 227 (331)
|++++++++.+. .+++++|++||++++.. .+++++|+++||++++|+||+++.. .
T Consensus 167 ~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pL~g~~~------------~----------- 221 (290)
T PRK10376 167 VTPTQVAEARKI-AEIVCVQNHYNLAHRAD-DALIDALARDGIAYVPFFPLGGFTP------------L----------- 221 (290)
T ss_pred CCHHHHHHHHhh-CCeEEEecccCCCcCCh-HHHHHHHHHcCCEEEEeecCCCCCh------------h-----------
Confidence 999999998875 37899999999998764 5799999999999999999964310 0
Q ss_pred HHHhhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeecccCCcHhHHHHhhchhcCCCCHHHHHH
Q 020082 228 KYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNS 307 (331)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~~~a~~~~L~~~~~~~ 307 (331)
..+.++++|+++|+|++|+||+|+++++.++++|+|+++ ++|+++|+++++.+|++++++.
T Consensus 222 -----------------~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~--~~~l~en~~a~~~~L~~e~~~~ 282 (290)
T PRK10376 222 -----------------QSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSS--VAHLRENLAAAELVLSEEVLAE 282 (290)
T ss_pred -----------------hhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCC--HHHHHHHHhhccCCCCHHHHHH
Confidence 026789999999999999999999999777789999999 9999999999999999999999
Q ss_pred HHHHhh
Q 020082 308 IQEVTK 313 (331)
Q Consensus 308 l~~~~~ 313 (331)
|+++.+
T Consensus 283 l~~~~~ 288 (290)
T PRK10376 283 LDGIAR 288 (290)
T ss_pred HHHHHh
Confidence 998864
No 13
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.8e-49 Score=357.37 Aligned_cols=249 Identities=16% Similarity=0.275 Sum_probs=208.3
Q ss_pred cccceeeeccccCCCCCCchhhHHHHHHHHHHHhhhcCCccEEECCC-CchHHHHHHHHhhhhcCCCccchheeeecccc
Q 020082 3 SVERDVADEWRVGPYRPGRRRRCHASLRRCRSHHLRHGRSLSFDFVD-GPAEDLYGIFINRVRRERPPEFLDKVRGLTKW 81 (331)
Q Consensus 3 ~vS~l~lGt~~~g~~~~~~~~~~~~~l~~al~~~~~~GGin~~DTA~-g~sE~~lG~~l~~~~~~~~~~~~~~~~~~~k~ 81 (331)
.||+||||||++ +.+++.++++.|++. |+||||||+ +.+|+.+|++|+..+..|. .+++.+|+
T Consensus 14 ~v~~lglG~~~~------~~~~~~~~l~~A~~~-----Gi~~~DTA~~Yg~E~~lG~al~~~~~~R~-~~~i~tK~---- 77 (275)
T PRK11565 14 VMPQLGLGVWQA------SNEEVITAIHKALEV-----GYRSIDTAAIYKNEEGVGKALKEASVARE-ELFITTKL---- 77 (275)
T ss_pred ccCCcceECccC------CHHHHHHHHHHHHHh-----CCCEEEchhhhCCHHHHHHHHHHcCCCHH-HEEEEEEe----
Confidence 489999999975 246788888888665 599999999 5589999999986432222 34444443
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHc-C
Q 020082 82 VPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-G 160 (331)
Q Consensus 82 ~~~~~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~-~ 160 (331)
++. +++.+++++++||+|||+||||+|++|+|++..+...++|++|++|+++||||+||+|||++++++++.+. +
T Consensus 78 ~~~----~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~ 153 (275)
T PRK11565 78 WND----DHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETG 153 (275)
T ss_pred cCc----chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCHHHHHHHHHhCC
Confidence 322 57899999999999999999999999999875444689999999999999999999999999999998853 4
Q ss_pred CCeeeecccccccccChhhhHHHHHHHhCCeEEEccccccccccccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCch
Q 020082 161 IPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWS 240 (331)
Q Consensus 161 ~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (331)
+++.++|++||++.+. .+++++|+++||++++|+||++|.- + .+.
T Consensus 154 v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~~-~--------------~~~------------------ 198 (275)
T PRK11565 154 VTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGGK-G--------------VFD------------------ 198 (275)
T ss_pred CCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCCc-c--------------ccc------------------
Confidence 6789999999998764 5799999999999999999987731 0 000
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeecccCCcHhHHHHhhchhcCCCCHHHHHHHHHHhhcC
Q 020082 241 QFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKG 315 (331)
Q Consensus 241 ~~~~~~~~l~~ia~~~g~s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~~~a~~~~L~~~~~~~l~~~~~~~ 315 (331)
.+.+.++|+++|+|++|+||+|+++++. ++|+|+++ ++|+++|+++++++|+++++++|+++....
T Consensus 199 -----~~~l~~ia~~~g~s~aq~aL~w~l~~~~--~~I~g~~~--~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~ 264 (275)
T PRK11565 199 -----QKVIRDLADKYGKTPAQIVIRWHLDSGL--VVIPKSVT--PSRIAENFDVFDFRLDKDELGEIAKLDQGK 264 (275)
T ss_pred -----CHHHHHHHHHhCCCHHHHHHHHHHcCCC--EeeCCCCC--HHHHHHHHhccCCCcCHHHHHHHHhhcccC
Confidence 1678999999999999999999999974 48999999 999999999999999999999999998544
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=5.7e-48 Score=325.56 Aligned_cols=268 Identities=22% Similarity=0.305 Sum_probs=226.3
Q ss_pred cccceeeeccccCCCCCCchhhHHHHHHHHHHHhhhcCCccEEECCC----CchHHHHHHHHhhhhcCCCccchheeeec
Q 020082 3 SVERDVADEWRVGPYRPGRRRRCHASLRRCRSHHLRHGRSLSFDFVD----GPAEDLYGIFINRVRRERPPEFLDKVRGL 78 (331)
Q Consensus 3 ~vS~l~lGt~~~g~~~~~~~~~~~~~l~~al~~~~~~GGin~~DTA~----g~sE~~lG~~l~~~~~~~~~~~~~~~~~~ 78 (331)
++|+|.+|+|++..|+..+ .+....++.+++. |||+||-|+ |..|.++|.+|+-.|.-|. .+.+.+|..
T Consensus 12 e~Sriv~G~wRl~d~~~~~-~e~~~~Ie~~le~-----Gitt~DhADIYGgy~cE~~fg~aL~l~p~lRe-kieivsKCG 84 (298)
T COG4989 12 EFSRIVLGYWRLNDWNMSA-RELLSFIETALEL-----GITTFDHADIYGGYQCEALFGEALKLAPGLRE-KIEIVSKCG 84 (298)
T ss_pred cHHHHHHHHHhhhhccCCH-HHHHHHHHHHHHc-----CcccchhhhhcCCccHHHHHHHHHhcChhhhh-heEeeeccc
Confidence 4799999999998877655 6666677777555 599999999 8899999999996553332 333333322
Q ss_pred cccc----C--CCCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHH
Q 020082 79 TKWV----P--PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTER 152 (331)
Q Consensus 79 ~k~~----~--~~~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~ 152 (331)
.... + .+++++.++|..|+|+||+||+|||+|+++||+||+-.+ -+|+.+||..|++.||||++|||||++.+
T Consensus 85 I~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd-~eeVAeAf~~L~~sGKVr~fGVSNf~p~Q 163 (298)
T COG4989 85 IRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMD-AEEVAEAFTHLHKSGKVRHFGVSNFNPAQ 163 (298)
T ss_pred cccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCC-HHHHHHHHHHHHhcCCeeeeecCCCCHHH
Confidence 2222 1 256899999999999999999999999999999999877 69999999999999999999999999999
Q ss_pred HHHHHHc-CCCeeeecccccccccCh-hhhHHHHHHHhCCeEEEccccccccccccccCCCCCCCCCCCCCCCchhHHHH
Q 020082 153 LRIILEN-GIPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYK 230 (331)
Q Consensus 153 l~~~~~~-~~~~~~vq~~~nl~~~~~-~~~~~~~~~~~gi~via~~~l~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (331)
++-+... ..++++||+++|++.... .++.+++|+.+.|..++||||++|-+.-
T Consensus 164 ~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~------------------------- 218 (298)
T COG4989 164 FELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFL------------------------- 218 (298)
T ss_pred HHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCcccc-------------------------
Confidence 9988764 357999999999986543 4679999999999999999999984421
Q ss_pred hhhhccCCchhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhCCCceeEeecccCCcHhHHHHhhchhcCCCCHHHHHHHH
Q 020082 231 RMVDAWGGWSQFQVLLQTLKRIASKHG-VSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQ 309 (331)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~l~~ia~~~g-~s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~~~a~~~~L~~~~~~~l~ 309 (331)
+.++++.+..++..+|.++| .|.+++|++|++.+|.--.+|+|+.+ ++++++.++|+++.||.++|-+|.
T Consensus 219 -------g~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~--~eRi~~a~~Al~~~LtRqqWf~Iy 289 (298)
T COG4989 219 -------GDDKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGN--LERIRAAIKALSLTLTRQQWFEIY 289 (298)
T ss_pred -------CCcchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCC--HHHHHHHHHHhhccccHHHHHHHH
Confidence 11355667799999999999 79999999999999999999999998 999999999999999999999998
Q ss_pred HHh
Q 020082 310 EVT 312 (331)
Q Consensus 310 ~~~ 312 (331)
.+.
T Consensus 290 ~Aa 292 (298)
T COG4989 290 TAA 292 (298)
T ss_pred HHh
Confidence 876
No 15
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=2.5e-46 Score=329.21 Aligned_cols=257 Identities=17% Similarity=0.264 Sum_probs=214.4
Q ss_pred ccceeeeccccCCCCCCchhhHHHHHHHHHHHhhhcCCccEEECCC-CchHHHHHHHHhhhhcCCCccchheeeeccccc
Q 020082 4 VERDVADEWRVGPYRPGRRRRCHASLRRCRSHHLRHGRSLSFDFVD-GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWV 82 (331)
Q Consensus 4 vS~l~lGt~~~g~~~~~~~~~~~~~l~~al~~~~~~GGin~~DTA~-g~sE~~lG~~l~~~~~~~~~~~~~~~~~~~k~~ 82 (331)
+..||||||. .+.+++.+.++.|++. |.++||||. +.+|..+|++|++.-.+.. ..+..+|+.||.+
T Consensus 15 mP~iGlGTw~------~~~~~~~~aV~~Al~~-----GYRHIDtA~~Y~NE~evG~aik~~i~~~~-v~RediFiTSKlw 82 (300)
T KOG1577|consen 15 MPIIGLGTWQ------SPPGQVAEAVKAAIKA-----GYRHIDTAHVYGNEKEVGEAIKELLAEGG-VKREDIFITSKLW 82 (300)
T ss_pred cceeeeEecc------cChhhHHHHHHHHHHh-----CcceeechhhhCChHHHHHHHHHHhhhCC-cchhhheeeeccC
Confidence 5678999996 3457777888888666 488899999 9999999999997643332 4556789999988
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCC---------------CchHHHHHHHHHHHHHcCcccEEecCc
Q 020082 83 PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS---------------NPGYLDALNHLTDLKEEGKIKTVALTN 147 (331)
Q Consensus 83 ~~~~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~---------------~~~~~e~~~~l~~l~~~Gkir~iGvS~ 147 (331)
+.. ..++.++.++++||++||+||+|||++|||-.. ..+..++|++|++++++|++|+|||||
T Consensus 83 ~~~--~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsIGVSN 160 (300)
T KOG1577|consen 83 PTD--HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRSIGVSN 160 (300)
T ss_pred ccc--cChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHHHHHHcCCceEeeeec
Confidence 763 579999999999999999999999999999543 123678999999999999999999999
Q ss_pred ccHHHHHHHHHc-CCCeeeecccccccccChhhhHHHHHHHhCCeEEEccccccccccccccCCCCCCCCCCCCCCCchh
Q 020082 148 FDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSL 226 (331)
Q Consensus 148 ~~~~~l~~~~~~-~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l~~G~L~g~~~~~~~~~~~~~~~~~~~~~ 226 (331)
|+..++++++.. .++|.++|+++++.- ....++++|+++||.+.||+||+.+-- ++ ....
T Consensus 161 F~~~~le~ll~~~ki~P~vnQvE~HP~~--~Q~~L~~fCk~~~I~v~AYSpLg~~~~-~~------------~ll~---- 221 (300)
T KOG1577|consen 161 FNIKQLEELLNLAKIKPAVNQVECHPYL--QQKKLVEFCKSKGIVVTAYSPLGSPGR-GS------------DLLE---- 221 (300)
T ss_pred CCHHHHHHHHhcCCCCCccceeeccCCc--ChHHHHHHHhhCCcEEEEecCCCCCCC-cc------------cccc----
Confidence 999999999986 488999999999953 345799999999999999999987621 00 0000
Q ss_pred HHHHhhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeecccCCcHhHHHHhhchhcCCCCHHHHH
Q 020082 227 QKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVN 306 (331)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~~~a~~~~L~~~~~~ 306 (331)
.+.+.+||++||.||+|++|||.++++. ++||-.++ +++++||+..+++.||++|++
T Consensus 222 -------------------~~~l~~iA~K~~kt~aQIlLrw~~q~g~--~vipKS~~--~~Ri~eN~~vfdf~Lt~ed~~ 278 (300)
T KOG1577|consen 222 -------------------DPVLKEIAKKYNKTPAQILLRWALQRGV--SVIPKSSN--PERIKENFKVFDFELTEEDMK 278 (300)
T ss_pred -------------------CHHHHHHHHHhCCCHHHHHHHHHHhCCc--EEEeccCC--HHHHHHHHhhccccCCHHHHH
Confidence 1789999999999999999999999874 46676666 999999999999999999999
Q ss_pred HHHHHhhcCC
Q 020082 307 SIQEVTKKGK 316 (331)
Q Consensus 307 ~l~~~~~~~~ 316 (331)
.|+......+
T Consensus 279 ~i~~~~~~~r 288 (300)
T KOG1577|consen 279 KLDSLNSNER 288 (300)
T ss_pred HHhhccccce
Confidence 9997765544
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=2.1e-44 Score=320.20 Aligned_cols=260 Identities=19% Similarity=0.232 Sum_probs=215.2
Q ss_pred cccceeeeccccC-CC-CCCchhhHHHHHHHHHHHhhhcCCccEEECCC----CchHHHHHHHHhhhhcCCCccchheee
Q 020082 3 SVERDVADEWRVG-PY-RPGRRRRCHASLRRCRSHHLRHGRSLSFDFVD----GPAEDLYGIFINRVRRERPPEFLDKVR 76 (331)
Q Consensus 3 ~vS~l~lGt~~~g-~~-~~~~~~~~~~~l~~al~~~~~~GGin~~DTA~----g~sE~~lG~~l~~~~~~~~~~~~~~~~ 76 (331)
.+|.+|||||++- .+ +..+.+.+.++|+.|++. |||+||||. |.||..||++|++..|+ +++
T Consensus 12 ~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~-----GiNyidTA~~Yh~g~sE~~lgkaL~~~~Re-------kv~ 79 (391)
T COG1453 12 ELSILGFGCMRLPLKEQGSIDEENANETIDYAIEH-----GINYIDTAWPYHGGESEEFLGKALKDGYRE-------KVK 79 (391)
T ss_pred ccceeccceeecccccCCCccHHHHHHHHHHHHHc-----CCceEeecccccCCCchHHHHHHhhhcccc-------eEE
Confidence 5799999999983 23 334777889999999666 599999998 89999999999986655 445
Q ss_pred ecccccCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCch-H--HHHHHHHHHHHHcCcccEEecCccc-HHH
Q 020082 77 GLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG-Y--LDALNHLTDLKEEGKIKTVALTNFD-TER 152 (331)
Q Consensus 77 ~~~k~~~~~~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~-~--~e~~~~l~~l~~~Gkir~iGvS~~~-~~~ 152 (331)
+.||...++. -+++.+++-++++|++||+||+|+|+||..+...-+ . ..++++++++|++||||++|+|.|+ .+.
T Consensus 80 LaTKlp~~~~-~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eGkIr~~GFSfHgs~e~ 158 (391)
T COG1453 80 LATKLPSWPV-KDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEGKIRNAGFSFHGSTEV 158 (391)
T ss_pred EEeecCCccc-cCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcCcEEEeeecCCCCHHH
Confidence 5555543322 378999999999999999999999999998763210 1 1379999999999999999999995 577
Q ss_pred HHHHHHcCCCeeeecccccccccChh--hhHHHHHHHhCCeEEEccccccccccccccCCCCCCCCCCCCCCCchhHHHH
Q 020082 153 LRIILENGIPVVSNQVQHSVVDMRPQ--QKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYK 230 (331)
Q Consensus 153 l~~~~~~~~~~~~vq~~~nl~~~~~~--~~~~~~~~~~gi~via~~~l~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (331)
+.+++.. .+++++|++||.++.... .+.+++|.++|++|+.++|+.+|-|.... |
T Consensus 159 ~~~iv~a-~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~v-------P--------------- 215 (391)
T COG1453 159 FKEIVDA-YPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNV-------P--------------- 215 (391)
T ss_pred HHHHHhc-CCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccCC-------C---------------
Confidence 8888874 479999999999987654 38999999999999999999999876421 1
Q ss_pred hhhhccCCchhHHHHHHHHHHHHHHcC--CCHHHHHHHHHHhCCCceeEeecccCCcHhHHHHhhchhcC--C-CCHHHH
Q 020082 231 RMVDAWGGWSQFQVLLQTLKRIASKHG--VSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFML--S-LDEDDV 305 (331)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~l~~ia~~~g--~s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~~~a~~~--~-L~~~~~ 305 (331)
+++.++++++. .||+.+|+||+++||.|+++++||++ ++||+||++.++. | ||+++.
T Consensus 216 ----------------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~--~~~l~enLk~~~~~~p~lte~e~ 277 (391)
T COG1453 216 ----------------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNT--PEQLEENLKIASELEPSLTEEEL 277 (391)
T ss_pred ----------------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCC--HHHHHHHHHHHhhcCCccCHHHH
Confidence 68888888876 58999999999999999999999999 9999999998865 4 999998
Q ss_pred HHHHHHhhcCC
Q 020082 306 NSIQEVTKKGK 316 (331)
Q Consensus 306 ~~l~~~~~~~~ 316 (331)
+.|..+.+..+
T Consensus 278 ~il~~v~~~~~ 288 (391)
T COG1453 278 QILEKVEEIYR 288 (391)
T ss_pred HHHHHHHHHHH
Confidence 88888765544
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=7.3e-43 Score=296.72 Aligned_cols=276 Identities=18% Similarity=0.237 Sum_probs=221.8
Q ss_pred CcccceeeeccccC-CCCCCchhhHHHHHHHHHHHhhhcCCccEEECCC----CchHHHHHHHHhhhhcCCCccchheee
Q 020082 2 QSVERDVADEWRVG-PYRPGRRRRCHASLRRCRSHHLRHGRSLSFDFVD----GPAEDLYGIFINRVRRERPPEFLDKVR 76 (331)
Q Consensus 2 ~~vS~l~lGt~~~g-~~~~~~~~~~~~~l~~al~~~~~~GGin~~DTA~----g~sE~~lG~~l~~~~~~~~~~~~~~~~ 76 (331)
.+||+|+||...+| .|+..++++.+..+.+|+ ++| ||+|||++ +.||..+|.++++.||+. ..+.+|
T Consensus 32 l~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~----k~G-INyiDTsp~Ygqs~se~~lg~al~~vPR~a---YyIaTK 103 (342)
T KOG1576|consen 32 LRVSKLGFGGAALGQLFGDEDEEEGILTVIEAF----KSG-INYIDTSPYYGQSRSEEGLGLALKDVPREA---YYIATK 103 (342)
T ss_pred ceeeeeeecchhhhhhcCCcchhhhHHHHHHHH----Hcc-ccceecCcccCcchhHHHHHHHHhhCChhh---eeeeee
Confidence 36999999999986 688888898999888884 554 99999999 889999999999999873 233333
Q ss_pred ecc-ccc-CCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCC---CchHHHHHHHHHHHHHcCcccEEecCcccHH
Q 020082 77 GLT-KWV-PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS---NPGYLDALNHLTDLKEEGKIKTVALTNFDTE 151 (331)
Q Consensus 77 ~~~-k~~-~~~~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~---~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~ 151 (331)
++. +.. .+.++++++.+|+|+++||+||++||+|++++|..+.. .+.+.|++.+|+++|++||||+||++.++.+
T Consensus 104 vgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGitgypld 183 (342)
T KOG1576|consen 104 VGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGITGYPLD 183 (342)
T ss_pred eeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeeecccchH
Confidence 321 112 23478999999999999999999999999999998764 2336799999999999999999999999999
Q ss_pred HHHHHHHcC-CCeeeec--ccccccccChhhhHHHHHHHhCCeEEEccccccccccccccCCCCCCCCCCCCCCCchhHH
Q 020082 152 RLRIILENG-IPVVSNQ--VQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQK 228 (331)
Q Consensus 152 ~l~~~~~~~-~~~~~vq--~~~nl~~~~~~~~~~~~~~~~gi~via~~~l~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~ 228 (331)
.+.++++.+ ..++++- .+|++.+..- -..++..+.+|++|+.-++++.|+|+.+ +++.++|....
T Consensus 184 vl~~~ae~~~G~~dvvlsY~ry~l~d~tL-l~~~~~~~sk~vgVi~AsalsmgLLt~~-----------gp~~wHPaS~E 251 (342)
T KOG1576|consen 184 VLTECAERGKGRLDVVLSYCRYTLNDNTL-LRYLKRLKSKGVGVINASALSMGLLTNQ-----------GPPPWHPASDE 251 (342)
T ss_pred HHHHHHhcCCCceeeehhhhhhccccHHH-HHHHHHHHhcCceEEehhhHHHHHhhcC-----------CCCCCCCCCHH
Confidence 999999864 2355555 7788765332 3677888899999999999999999753 34445554332
Q ss_pred HHhhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeecccCCcHhHHHHhhchhcCCCCHHHHHHH
Q 020082 229 YKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSI 308 (331)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~~~a~~~~L~~~~~~~l 308 (331)
..+...+..++|++.|+..+.+|+.|+++.|++.++++|+++ .++|+.|+++-...||..+-.+.
T Consensus 252 -------------lk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s--~~~l~~nLdan~~~ls~~~~Qev 316 (342)
T KOG1576|consen 252 -------------LKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSS--RQLLRINLDANFDRLSSKHEQEV 316 (342)
T ss_pred -------------HHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCch--HHHHHHHHHhhhccccchhHHHH
Confidence 334556778899999999999999999999999999999999 99999999987668887444444
Q ss_pred HHHh
Q 020082 309 QEVT 312 (331)
Q Consensus 309 ~~~~ 312 (331)
..+.
T Consensus 317 l~~~ 320 (342)
T KOG1576|consen 317 LRIL 320 (342)
T ss_pred HHHH
Confidence 4443
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.89 E-value=3.6e-05 Score=65.82 Aligned_cols=72 Identities=24% Similarity=0.366 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHc-CCCeeeecccccccccChhhhHHHHHHHhCCeEEEcc
Q 020082 124 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 196 (331)
Q Consensus 124 ~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~-~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~ 196 (331)
+.+.|+.||+++.+|||..||+|.+++.++++++.. .+.|..+|+...--+.-| .++.++|.+++|.+..++
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeeeecC
Confidence 347999999999999999999999999999999974 578999998877544444 489999999999999876
No 19
>PRK00208 thiG thiazole synthase; Reviewed
Probab=90.33 E-value=12 Score=32.95 Aligned_cols=107 Identities=11% Similarity=0.019 Sum_probs=75.6
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCCeee
Q 020082 86 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS 165 (331)
Q Consensus 86 ~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~ 165 (331)
...+.+...+-.+-.++-++++.|=|=.+..+....++..+++++.+.|+++|.+ -+=+++-++...+++.+.| +++
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~-vlpyc~~d~~~ak~l~~~G--~~~ 147 (250)
T PRK00208 71 GCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFV-VLPYCTDDPVLAKRLEEAG--CAA 147 (250)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHcC--CCE
Confidence 3568888888889999999999999988888888788899999999999999986 3446677788888877754 444
Q ss_pred eccccccccc--Ch-hhhHHHHHHH-hCCeEEEc
Q 020082 166 NQVQHSVVDM--RP-QQKMAELCQL-TGVKLITY 195 (331)
Q Consensus 166 vq~~~nl~~~--~~-~~~~~~~~~~-~gi~via~ 195 (331)
++..=.++-. .. ..+.++...+ .++.||+-
T Consensus 148 vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIve 181 (250)
T PRK00208 148 VMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD 181 (250)
T ss_pred eCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Confidence 4321122210 00 1245666665 47777755
No 20
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=89.39 E-value=14 Score=32.45 Aligned_cols=107 Identities=11% Similarity=0.009 Sum_probs=75.3
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCCeee
Q 020082 86 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS 165 (331)
Q Consensus 86 ~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~ 165 (331)
...+.+.-.+-.+-.++-+++|.|=|=.+..+..-.++..+++++.+.|+++|.+ -+=+++-++...+++.+.| +++
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~-vlpyc~dd~~~ar~l~~~G--~~~ 147 (248)
T cd04728 71 GCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFT-VLPYCTDDPVLAKRLEDAG--CAA 147 (248)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHcC--CCE
Confidence 3568888888889999999999999988888887777789999999999999986 3446677788888887754 444
Q ss_pred ecccccccccC--h-hhhHHHHHHH-hCCeEEEc
Q 020082 166 NQVQHSVVDMR--P-QQKMAELCQL-TGVKLITY 195 (331)
Q Consensus 166 vq~~~nl~~~~--~-~~~~~~~~~~-~gi~via~ 195 (331)
++..=.++-.. . ..++++...+ .++.+|+-
T Consensus 148 vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~e 181 (248)
T cd04728 148 VMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVD 181 (248)
T ss_pred eCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEe
Confidence 43312222110 0 1345555555 46777654
No 21
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=84.17 E-value=9.9 Score=33.85 Aligned_cols=67 Identities=4% Similarity=-0.075 Sum_probs=48.7
Q ss_pred HHHHHHcCcccEEecC--cccHHHHHHHHHcCCCeeeecccccccccChhhhHHHHHHHhCCeEEEcccc
Q 020082 131 LTDLKEEGKIKTVALT--NFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 198 (331)
Q Consensus 131 l~~l~~~Gkir~iGvS--~~~~~~l~~~~~~~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l 198 (331)
|.+-.++|+. -+|+- .-++...+.+...|.++.++=.+.++++...-..++..|+..|+..+++-|-
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~ 78 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPT 78 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 4555556875 45532 3345555555556888999999999988776678899999999999988874
No 22
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=83.89 E-value=40 Score=31.95 Aligned_cols=167 Identities=13% Similarity=0.046 Sum_probs=97.9
Q ss_pred ccceeeecc-------ccCCCCC-CchhhHHHHHHHHHHHhhhcCCccEEECCCCchHHHHHHH-HhhhhcCCCccchhe
Q 020082 4 VERDVADEW-------RVGPYRP-GRRRRCHASLRRCRSHHLRHGRSLSFDFVDGPAEDLYGIF-INRVRRERPPEFLDK 74 (331)
Q Consensus 4 vS~l~lGt~-------~~g~~~~-~~~~~~~~~l~~al~~~~~~GGin~~DTA~g~sE~~lG~~-l~~~~~~~~~~~~~~ 74 (331)
+.+.++|.. ++|+... .+.+.-.+.++.|++.|. -+..|-+.|..-..+.+. |...+ ..+-+
T Consensus 50 ~~p~~IG~glrtKVNaNIGtS~~~~d~~~E~~K~~~A~~~GA----DtiMDLStGgdl~~iR~~il~~s~-----vpvGT 120 (423)
T TIGR00190 50 SEPMGIGRNLRTKVNANIGTSADTSDIEEEVEKALIAIKYGA----DTVMDLSTGGDLDEIRKAILDAVP-----VPVGT 120 (423)
T ss_pred CCceEecCCceeEEEeeecCCCCCCCHHHHHHHHHHHHHcCC----CeEeeccCCCCHHHHHHHHHHcCC-----CCccC
Confidence 445566653 4565332 466667777888877743 345888884444444444 43322 22222
Q ss_pred eeecc---cccCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHH
Q 020082 75 VRGLT---KWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTE 151 (331)
Q Consensus 75 ~~~~~---k~~~~~~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~ 151 (331)
+-++. +......+++++.+.+.+++-.+ |-+|++-+|.-- +.+.++.++++|. ..|+-+-...
T Consensus 121 VPiYqa~~~~~~~~~~mt~d~~~~~ie~qa~----dGVDfmTiH~Gi--------~~~~~~~~~~~~R--~~giVSRGGs 186 (423)
T TIGR00190 121 VPIYQAAEKVHGAVEDMDEDDMFRAIEKQAK----DGVDFMTIHAGV--------LLEYVERLKRSGR--ITGIVSRGGA 186 (423)
T ss_pred ccHHHHHHHhcCChhhCCHHHHHHHHHHHHH----hCCCEEEEccch--------hHHHHHHHHhCCC--ccCeecCcHH
Confidence 22221 11112345788888888887655 458899999842 5667888999885 5676666655
Q ss_pred HHHHHHHcCCCeeeecccccccccChhhhHHHHHHHhCCeEEEccccccccccc
Q 020082 152 RLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSE 205 (331)
Q Consensus 152 ~l~~~~~~~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l~~G~L~g 205 (331)
-+...+.+. ..-|++- +.-..+++.|++++|.+- |+-|+=.|
T Consensus 187 ~~~~WM~~~-------~~ENPly-e~fD~lLeI~~~yDVtlS----LGDglRPG 228 (423)
T TIGR00190 187 ILAAWMLHH-------HKENPLY-KNFDYILEIAKEYDVTLS----LGDGLRPG 228 (423)
T ss_pred HHHHHHHHc-------CCcCchH-HHHHHHHHHHHHhCeeee----ccCCcCCC
Confidence 555544321 1234442 223589999999999875 44454333
No 23
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=83.62 E-value=4.8 Score=35.65 Aligned_cols=105 Identities=14% Similarity=0.085 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcC-cccEEecCcccHHHHHHHHHcCCCeeee
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVVSN 166 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~G-kir~iGvS~~~~~~l~~~~~~~~~~~~v 166 (331)
++.+...+-++. |..+|+++|.+-..-.+... |..++.++.++.+++.+ .++...++......++.+.+.+ ++.+
T Consensus 16 ~s~e~~~~i~~~-L~~~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g--~~~i 91 (265)
T cd03174 16 FSTEDKLEIAEA-LDEAGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG--VDEV 91 (265)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC--cCEE
Confidence 466655555554 88999999998766544222 22355788888899888 6777777766677788888765 4445
Q ss_pred cccccccc--------cCh------hhhHHHHHHHhCCeEEEcc
Q 020082 167 QVQHSVVD--------MRP------QQKMAELCQLTGVKLITYG 196 (331)
Q Consensus 167 q~~~nl~~--------~~~------~~~~~~~~~~~gi~via~~ 196 (331)
++.+..-+ +.. -...++++++.|+.+...-
T Consensus 92 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 92 RIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 55443321 111 1367888999998766554
No 24
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=82.78 E-value=27 Score=30.58 Aligned_cols=107 Identities=11% Similarity=0.049 Sum_probs=65.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCCeeee
Q 020082 87 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 166 (331)
Q Consensus 87 ~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~v 166 (331)
..+.+.-.+..+-+++-++++.|=|=.+..+..-.|+..|++++-+.|+++|-+- +=.++-++-..+++.+.| +.++
T Consensus 72 c~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~V-lPY~~~D~v~akrL~d~G--caav 148 (247)
T PF05690_consen 72 CRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEDAG--CAAV 148 (247)
T ss_dssp -SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EE-EEEE-S-HHHHHHHHHTT---SEB
T ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEE-eecCCCCHHHHHHHHHCC--CCEE
Confidence 4588888888899999999999988777776666677889999999999999763 333444566666776644 4445
Q ss_pred cccccccccC----hhhhHHHHHHHhCCeEEEcc
Q 020082 167 QVQHSVVDMR----PQQKMAELCQLTGVKLITYG 196 (331)
Q Consensus 167 q~~~nl~~~~----~~~~~~~~~~~~gi~via~~ 196 (331)
+--=+++--. ....+...+.+.+|.+|.-.
T Consensus 149 MPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDA 182 (247)
T PF05690_consen 149 MPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDA 182 (247)
T ss_dssp EEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES
T ss_pred EecccccccCcCCCCHHHHHHHHHhcCCcEEEeC
Confidence 5444443110 01234444666699999765
No 25
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=82.77 E-value=3.8 Score=39.43 Aligned_cols=63 Identities=25% Similarity=0.330 Sum_probs=51.4
Q ss_pred HHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCC--eeeeccc
Q 020082 99 VSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP--VVSNQVQ 169 (331)
Q Consensus 99 ~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~--~~~vq~~ 169 (331)
+.-+|+.+.|+|.+ ..+++++++..++.+++|+...||+-..-.+.+.++++.++. +..-|..
T Consensus 193 ri~kR~~~gyld~~--------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQTS 257 (545)
T TIGR01228 193 RIDKRLETKYCDEQ--------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTDQTS 257 (545)
T ss_pred HHHHHHhcCcceeE--------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCCCCc
Confidence 34578888999985 234899999999999999999999999999999999987754 4445654
No 26
>PRK05414 urocanate hydratase; Provisional
Probab=82.61 E-value=4 Score=39.50 Aligned_cols=63 Identities=21% Similarity=0.267 Sum_probs=51.4
Q ss_pred HHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCC--eeeeccc
Q 020082 99 VSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP--VVSNQVQ 169 (331)
Q Consensus 99 ~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~--~~~vq~~ 169 (331)
+.-+|+.+.|+|.+ ..+++++++..++.+++|+...||+-..-++.+.++++.++. +..-|..
T Consensus 202 ri~kR~~~gyld~~--------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtDQTS 266 (556)
T PRK05414 202 RIDKRLRTGYLDEK--------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTDQTS 266 (556)
T ss_pred HHHHHHhCCcceeE--------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCcCcc
Confidence 44578889999986 233899999999999999999999999999999999987754 4445554
No 27
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=82.24 E-value=8.6 Score=32.56 Aligned_cols=105 Identities=17% Similarity=0.189 Sum_probs=73.5
Q ss_pred HHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHH-cCCCeeeeccccccc
Q 020082 95 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE-NGIPVVSNQVQHSVV 173 (331)
Q Consensus 95 ~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~-~~~~~~~vq~~~nl~ 173 (331)
..+++.|....-+.+|.+.+..--.. +...-..|+++..-|+-.-|++.||.-+..+--+- .|.-|..-+++|+..
T Consensus 62 ~Dld~gL~~f~d~sFD~VIlsqtLQ~---~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WY 138 (193)
T PF07021_consen 62 GDLDEGLADFPDQSFDYVILSQTLQA---VRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWY 138 (193)
T ss_pred CCHHHhHhhCCCCCccEEehHhHHHh---HhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 33455566666666666655443111 22344557777888988889999999888775554 466677788888876
Q ss_pred ccCh-----hhhHHHHHHHhCCeEEEcccccccc
Q 020082 174 DMRP-----QQKMAELCQLTGVKLITYGTVMGGL 202 (331)
Q Consensus 174 ~~~~-----~~~~~~~~~~~gi~via~~~l~~G~ 202 (331)
+... -++..++|++.|+.+.-..++.++.
T Consensus 139 dTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 139 DTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 5322 2578999999999999999988764
No 28
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=80.34 E-value=1.1 Score=41.57 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=35.7
Q ss_pred HcCcccEEecCcccHHHHHHHHHcCCCeeeecccccccccChhhhHHHHHHHhCCe
Q 020082 136 EEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVK 191 (331)
Q Consensus 136 ~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~ 191 (331)
=-|+|||+||--++++++.+++...-.-+..+.+..++--..+-.+++.|++.||+
T Consensus 262 CVGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 262 CVGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hhcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 35999999999999999999886321223333333333222234677777777764
No 29
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=80.06 E-value=17 Score=32.25 Aligned_cols=66 Identities=5% Similarity=-0.150 Sum_probs=46.4
Q ss_pred HHHHHcCcccEEec--CcccHHHHHHHHHcCCCeeeecccccccccChhhhHHHHHHHhCCeEEEcccc
Q 020082 132 TDLKEEGKIKTVAL--TNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 198 (331)
Q Consensus 132 ~~l~~~Gkir~iGv--S~~~~~~l~~~~~~~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l 198 (331)
.+-.++|+. .+|+ +.-++...+.+...|.++.++=.+.++++...-..++..++..|+..+++-|-
T Consensus 4 k~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~ 71 (249)
T TIGR03239 4 RQDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPW 71 (249)
T ss_pred HHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 333445664 3443 33355555555556888988999999988776678888899999999988874
No 30
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=79.61 E-value=58 Score=31.00 Aligned_cols=167 Identities=13% Similarity=0.063 Sum_probs=98.3
Q ss_pred ccceeeecc-------ccCCCC-CCchhhHHHHHHHHHHHhhhcCCccEEECCCCchHHHHHH-HHhhhhcCCCccchhe
Q 020082 4 VERDVADEW-------RVGPYR-PGRRRRCHASLRRCRSHHLRHGRSLSFDFVDGPAEDLYGI-FINRVRRERPPEFLDK 74 (331)
Q Consensus 4 vS~l~lGt~-------~~g~~~-~~~~~~~~~~l~~al~~~~~~GGin~~DTA~g~sE~~lG~-~l~~~~~~~~~~~~~~ 74 (331)
+.+.++|.. ++|+.. ..+.+.-.+.++.|++.|. -+..|-+.|..-..+.+ .|+..+ ..+.+
T Consensus 50 ~~p~~IG~gl~tKVNaNIGtS~~~~d~~~E~~K~~~A~~~GA----DtiMDLStggdl~~iR~~il~~s~-----vpvGT 120 (431)
T PRK13352 50 LKPVGIGKGLRTKVNANIGTSSDISDIEEELEKAKVAVKYGA----DTIMDLSTGGDLDEIRRAIIEASP-----VPVGT 120 (431)
T ss_pred CCeeEEcCCceeEEeeeecCCCCCCCHHHHHHHHHHHHHcCC----CeEeeccCCCCHHHHHHHHHHcCC-----CCCcC
Confidence 456666653 456533 2466677778888877743 33578888444444444 444322 22222
Q ss_pred eeecc---cc---cCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcc
Q 020082 75 VRGLT---KW---VPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF 148 (331)
Q Consensus 75 ~~~~~---k~---~~~~~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~ 148 (331)
+-++. +. .....+.+++.+.+.+++-.+ |=+|++-+|.-- +.+.++.++++|. ..|+-+-
T Consensus 121 VPiYqa~~~~~~k~~~~~~mt~d~~~~~ie~qa~----~GVDfmTiHcGi--------~~~~~~~~~~~~R--~~giVSR 186 (431)
T PRK13352 121 VPIYQAAVEAARKYGSVVDMTEDDLFDVIEKQAK----DGVDFMTIHCGV--------TRETLERLKKSGR--IMGIVSR 186 (431)
T ss_pred hhHHHHHHHHHhcCCChhhCCHHHHHHHHHHHHH----hCCCEEEEccch--------hHHHHHHHHhcCC--ccCeecC
Confidence 22211 00 122346788988888887665 458899999852 5566888898885 5676666
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccChhhhHHHHHHHhCCeEEEccccccccccc
Q 020082 149 DTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSE 205 (331)
Q Consensus 149 ~~~~l~~~~~~~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l~~G~L~g 205 (331)
...-+...+.+. ..-|++-. .-+.+++.|++++|.+- |+-|+=.|
T Consensus 187 GGs~~~~WM~~n-------~~ENPlye-~fD~lLeI~~~yDVtlS----LGDglRPG 231 (431)
T PRK13352 187 GGSFLAAWMLHN-------NKENPLYE-HFDYLLEILKEYDVTLS----LGDGLRPG 231 (431)
T ss_pred CHHHHHHHHHHc-------CCcCchHH-HHHHHHHHHHHhCeeee----ccCCcCCC
Confidence 555555444321 12355422 23589999999999875 44454333
No 31
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=79.59 E-value=38 Score=30.98 Aligned_cols=73 Identities=12% Similarity=0.187 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCccc-EEecCcccHHHHHHHHHcCCCeeeecccccccc-cChhhhHHHHHHHhCCeEEEccccccc
Q 020082 128 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVD-MRPQQKMAELCQLTGVKLITYGTVMGG 201 (331)
Q Consensus 128 ~~~l~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~-~~~~~~~~~~~~~~gi~via~~~l~~G 201 (331)
++.+.+|++...|- ..|=+-++.+.++++++.+ .++++|+.-+.+- -..-..+..+|+++|+.++..+-+..+
T Consensus 217 ~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~-~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 217 DDGLAYLRDKSPLPIMADESCFSAADAARLAGGG-AYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcC-CCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchhhH
Confidence 55677788877775 3455567899999998854 5788888755431 112357899999999999987655444
No 32
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=79.34 E-value=7.8 Score=33.49 Aligned_cols=98 Identities=19% Similarity=0.266 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHcCcccEEec----CcccHHHHHHHHH-cCCCeeeecccccccccChhhhHHHHHHHhCCeEEEcccc
Q 020082 124 YLDALNHLTDLKEEGKIKTVAL----TNFDTERLRIILE-NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 198 (331)
Q Consensus 124 ~~e~~~~l~~l~~~Gkir~iGv----S~~~~~~l~~~~~-~~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l 198 (331)
++++.++|..++ +..|.. |.+....++.+.+ .|.. .|.++-.....+++...-+.|..++.-++-
T Consensus 75 ve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~------~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vs 144 (223)
T COG2102 75 VEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLK------VYAPLWGRDPEELLEEMVEAGFEAIIVAVS 144 (223)
T ss_pred HHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCE------EeecccCCCHHHHHHHHHHcCCeEEEEEEe
Confidence 678888888888 444443 3455566666665 3432 244443333457777778888888888887
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHcCCCHH
Q 020082 199 MGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIP 261 (331)
Q Consensus 199 ~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~a 261 (331)
+.|+-.. +.+.....+.++.++.+.++||+.|+
T Consensus 145 a~gL~~~------------------------------~lGr~i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 145 AEGLDES------------------------------WLGRRIDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred ccCCChH------------------------------HhCCccCHHHHHHHHHHHHhcCCCcc
Confidence 7775310 01112223556899999999999875
No 33
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=78.40 E-value=28 Score=31.20 Aligned_cols=67 Identities=7% Similarity=0.054 Sum_probs=47.8
Q ss_pred HHHHHHcCcccEEec--CcccHHHHHHHHHcCCCeeeecccccccccChhhhHHHHHHHhCCeEEEcccc
Q 020082 131 LTDLKEEGKIKTVAL--TNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 198 (331)
Q Consensus 131 l~~l~~~Gkir~iGv--S~~~~~~l~~~~~~~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l 198 (331)
|.+..++|+.- +|+ ..-++...+.+...|.++.++=.+.++++......++..++..|+..+++-|-
T Consensus 9 lk~~L~~G~~~-~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~ 77 (267)
T PRK10128 9 FKEGLRKGEVQ-IGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVE 77 (267)
T ss_pred HHHHHHcCCce-EEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCC
Confidence 44555567763 443 23345555555566888888899999988776667888999999988888773
No 34
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=74.50 E-value=41 Score=30.59 Aligned_cols=83 Identities=10% Similarity=-0.064 Sum_probs=48.6
Q ss_pred HHHHHHHhhhhcCCCccchheeeecccccCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHH
Q 020082 54 DLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTD 133 (331)
Q Consensus 54 ~~lG~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~ 133 (331)
..+..-++.+..... .+++++.+.....-.....+++.+.+++..-+++-+.|.||+=.=+........+.....+|..
T Consensus 54 ~~~~~~i~~lk~~G~-kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~ 132 (294)
T cd06543 54 GWIKSDIAALRAAGG-DVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALAL 132 (294)
T ss_pred hhHHHHHHHHHHcCC-eEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHH
Confidence 344444444443333 5566655543211111235889999999999999999999995444322121113456677777
Q ss_pred HHHc
Q 020082 134 LKEE 137 (331)
Q Consensus 134 l~~~ 137 (331)
|+++
T Consensus 133 Lq~~ 136 (294)
T cd06543 133 LQKE 136 (294)
T ss_pred HHHH
Confidence 7665
No 35
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=73.88 E-value=6.2 Score=37.60 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=48.7
Q ss_pred HHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCCeeee
Q 020082 101 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 166 (331)
Q Consensus 101 L~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~v 166 (331)
-+||.+.|+|.. ...++|.++-.++..++|+-..||+-..-++.+.++++.++.|+++
T Consensus 204 ~~Rl~t~y~d~~--------a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~v 261 (561)
T COG2987 204 DKRLRTGYLDEI--------AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLV 261 (561)
T ss_pred HHHHhcchhhhh--------cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCcee
Confidence 468889999873 2337899999999999999999999999999999999877655544
No 36
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=73.69 E-value=35 Score=30.34 Aligned_cols=103 Identities=16% Similarity=0.096 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEE-EecCCCC--Cc--hHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCC
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYS--NP--GYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 162 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~~-lH~~d~~--~~--~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~ 162 (331)
++.+.+.+...+-+ .-|-|.||+=. --+|+.. .+ ..+.+...+..+++.-.+- +-+-++.++.++++++.|.+
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCC
Confidence 45566665555543 56899999953 2334332 11 1223444566676663443 78889999999999987743
Q ss_pred eeeecccccccccChhhhHHHHHHHhCCeEEEccc
Q 020082 163 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 197 (331)
Q Consensus 163 ~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~ 197 (331)
+ +| ..+..+.. ..+++.+++.|+.++.+..
T Consensus 99 i-IN--disg~~~~--~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 99 I-IN--DVSGGSDD--PAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred E-EE--eCCCCCCC--hHHHHHHHHcCCCEEEECC
Confidence 2 22 22332212 4789999999999999653
No 37
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=73.68 E-value=75 Score=29.26 Aligned_cols=110 Identities=7% Similarity=0.035 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCc---------ccHHHHHHHHHc
Q 020082 89 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---------FDTERLRIILEN 159 (331)
Q Consensus 89 ~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~---------~~~~~l~~~~~~ 159 (331)
+.+.+.+.++...+..+ +.-+.+=.=|+.......+.+.++.+++-|.|..+.+.+ .+.+.++.+.+.
T Consensus 120 ~~~e~~~~i~~i~~~~~---I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~ 196 (321)
T TIGR03822 120 SPAELDAAFAYIADHPE---IWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS 196 (321)
T ss_pred CHHHHHHHHHHHHhCCC---ccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc
Confidence 33444544443322222 333445444443321245777777888888776444432 345556666565
Q ss_pred CCCeeeeccccccccc--ChhhhHHHHHHHhCCeEEEcccccccc
Q 020082 160 GIPVVSNQVQHSVVDM--RPQQKMAELCQLTGVKLITYGTVMGGL 202 (331)
Q Consensus 160 ~~~~~~vq~~~nl~~~--~~~~~~~~~~~~~gi~via~~~l~~G~ 202 (331)
+.. ..+.++.|-... ......++.+++.||.+....++..|.
T Consensus 197 g~~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 197 GKT-VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred CCc-EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 633 344555542211 112356778889999999999998874
No 38
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=73.57 E-value=74 Score=30.82 Aligned_cols=111 Identities=10% Similarity=0.029 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCccc---HHHHHHHHHcCCCe
Q 020082 87 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD---TERLRIILENGIPV 163 (331)
Q Consensus 87 ~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~---~~~l~~~~~~~~~~ 163 (331)
.++++.+.+.+++..+.++ .++.+-|-.+.......+.+++.|..++++..=.++.+++.. ++.++++.+.+ +
T Consensus 59 ~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~g--v 134 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDLG--V 134 (442)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCC--C
Confidence 4789999999888777652 356666666543322235688999999988211257777533 67788887754 3
Q ss_pred eeecccccccccChh---------------------------hhHHHHHHHhCCeEEEccccccc
Q 020082 164 VSNQVQHSVVDMRPQ---------------------------QKMAELCQLTGVKLITYGTVMGG 201 (331)
Q Consensus 164 ~~vq~~~nl~~~~~~---------------------------~~~~~~~~~~gi~via~~~l~~G 201 (331)
+.+.+.++-++.+.- .+-++.+.+.|+.+....++--|
T Consensus 135 d~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpG 199 (442)
T TIGR01290 135 GHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPG 199 (442)
T ss_pred CeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCC
Confidence 445555554432110 02245567778887777776554
No 39
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=73.07 E-value=8.4 Score=37.36 Aligned_cols=63 Identities=17% Similarity=0.269 Sum_probs=45.8
Q ss_pred HHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCC--eeeeccc
Q 020082 99 VSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP--VVSNQVQ 169 (331)
Q Consensus 99 ~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~--~~~vq~~ 169 (331)
+.-+|+.+-|+|.+ ..+++++++..++.+++|+...||+-..-.+.+.++++.++. +..-|..
T Consensus 192 ri~kR~~~g~ld~~--------~~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~tDQTS 256 (546)
T PF01175_consen 192 RIEKRLEQGYLDEV--------TDDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVTDQTS 256 (546)
T ss_dssp HHHHHHHTTSSSEE--------ESSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE---SS
T ss_pred HHHHHHhCCCeeEE--------cCCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcccCCCc
Confidence 34567788999986 223899999999999999999999999899999999987643 5555665
No 40
>PRK07328 histidinol-phosphatase; Provisional
Probab=71.73 E-value=60 Score=28.93 Aligned_cols=99 Identities=14% Similarity=0.260 Sum_probs=57.3
Q ss_pred HHHHHHHHHHcCCCcccEEEEecCCCC---C---------chHHHHH----HHHHHHHHcCcccEEecCcc-------c-
Q 020082 94 RESIDVSRRRMDVPCLDMLQFHWWDYS---N---------PGYLDAL----NHLTDLKEEGKIKTVALTNF-------D- 149 (331)
Q Consensus 94 ~~~~~~SL~rLg~d~lDl~~lH~~d~~---~---------~~~~e~~----~~l~~l~~~Gkir~iGvS~~-------~- 149 (331)
...+++.|++-..||+ |..+|..+.. . .+.++++ +.+.++.+.|.+..+|=-.. .
T Consensus 94 ~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i~~~~~~~~ 172 (269)
T PRK07328 94 EEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPDLIKKFGHRPR 172 (269)
T ss_pred HHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHHcCCCCc
Confidence 3445556677666777 7788986421 0 1122333 35777888899988885442 1
Q ss_pred ---H---HH-HHHHHHcCCCeeeeccc--ccccccChhhhHHHHHHHhCCeEE
Q 020082 150 ---T---ER-LRIILENGIPVVSNQVQ--HSVVDMRPQQKMAELCQLTGVKLI 193 (331)
Q Consensus 150 ---~---~~-l~~~~~~~~~~~~vq~~--~nl~~~~~~~~~~~~~~~~gi~vi 193 (331)
. +. ++.+.+.+..+.+|-.. +..-...+...+++.|++.|+.++
T Consensus 173 ~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~it 225 (269)
T PRK07328 173 EDLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPSPALLRACRERGIPVV 225 (269)
T ss_pred hhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCHHHHHHHHHcCCCEE
Confidence 1 12 33333456666666532 222233445689999999998754
No 41
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=71.14 E-value=33 Score=31.43 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=23.8
Q ss_pred eecccCCcHhHHHHhhchhcC-CCCHHHHHHHH
Q 020082 278 MIGVRLGLAEHIQDTNAIFML-SLDEDDVNSIQ 309 (331)
Q Consensus 278 i~G~~~~~~~~l~e~~~a~~~-~L~~~~~~~l~ 309 (331)
..|..+ +..+...++++.. -+++++++.|.
T Consensus 269 p~gled--~~~l~~l~~~L~~~G~~e~~i~~i~ 299 (313)
T COG2355 269 PDGLED--VGKLPNLTAALIERGYSEEEIEKIA 299 (313)
T ss_pred chhhcC--hhHHHHHHHHHHHcCCCHHHHHHHH
Confidence 367888 8999999988866 49999877664
No 42
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=69.51 E-value=81 Score=27.92 Aligned_cols=99 Identities=9% Similarity=0.060 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcC-cccEEecCcccHHHHHHHHHcCCCeee
Q 020082 87 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVVS 165 (331)
Q Consensus 87 ~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~G-kir~iGvS~~~~~~l~~~~~~~~~~~~ 165 (331)
.++.+... .+-+.|.++|+++|++-+ |.. . +.-++.++.+.+.+ .++..+++....+.++.+.+.+++...
T Consensus 16 ~~~~~~k~-~i~~~L~~~Gv~~iE~g~---p~~--~--~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~ 87 (259)
T cd07939 16 AFSREEKL-AIARALDEAGVDEIEVGI---PAM--G--EEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVH 87 (259)
T ss_pred CCCHHHHH-HHHHHHHHcCCCEEEEec---CCC--C--HHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEE
Confidence 34556444 455559999999999952 221 1 12345566666633 477777777788889888876644322
Q ss_pred eccccccc------ccCh------hhhHHHHHHHhCCeEE
Q 020082 166 NQVQHSVV------DMRP------QQKMAELCQLTGVKLI 193 (331)
Q Consensus 166 vq~~~nl~------~~~~------~~~~~~~~~~~gi~vi 193 (331)
+-+..|-. ++.. -..++++|++.|+.+.
T Consensus 88 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 127 (259)
T cd07939 88 ISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS 127 (259)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 22222211 1111 1367889999998654
No 43
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=69.37 E-value=83 Score=29.42 Aligned_cols=103 Identities=11% Similarity=0.112 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEEecCCC--CCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCCeee
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY--SNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS 165 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~--~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~ 165 (331)
++.+ -+..+-+.|.++|+++|++-..-+|.. ...+.+++++.+.. ...+++.++. .+...++++++.+.+...
T Consensus 65 ~s~e-~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~---~~~~~~~~l~-~n~~die~A~~~g~~~v~ 139 (347)
T PLN02746 65 VPTS-VKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRN---LEGARFPVLT-PNLKGFEAAIAAGAKEVA 139 (347)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHh---ccCCceeEEc-CCHHHHHHHHHcCcCEEE
Confidence 4444 556666779999999999864444421 11123455555543 2335555554 488889999987644322
Q ss_pred eccc-------ccccccChh------hhHHHHHHHhCCeEEEcc
Q 020082 166 NQVQ-------HSVVDMRPQ------QKMAELCQLTGVKLITYG 196 (331)
Q Consensus 166 vq~~-------~nl~~~~~~------~~~~~~~~~~gi~via~~ 196 (331)
+-+. .|+ ++..+ .+++++++++|+.+.++-
T Consensus 140 i~~s~Sd~h~~~n~-~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~i 182 (347)
T PLN02746 140 VFASASESFSKSNI-NCSIEESLVRYREVALAAKKHSIPVRGYV 182 (347)
T ss_pred EEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 2211 222 12211 268899999998885443
No 44
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=69.24 E-value=50 Score=29.24 Aligned_cols=66 Identities=14% Similarity=0.061 Sum_probs=45.2
Q ss_pred HHHHHHcCcccEEec--CcccHHHHHHHHHcCCCeeeecccccccccChhhhHHHHHHHhCCeEEEccc
Q 020082 131 LTDLKEEGKIKTVAL--TNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 197 (331)
Q Consensus 131 l~~l~~~Gkir~iGv--S~~~~~~l~~~~~~~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~ 197 (331)
|.+..++|+. -+|+ ...++..++.+...|.++.++=++.++++...-..++..++..|+.++++-|
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~ 70 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPA 70 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECC
Confidence 3444556875 3443 3445666777777788888888899987655444577777777888888765
No 45
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=68.87 E-value=95 Score=30.33 Aligned_cols=109 Identities=16% Similarity=0.116 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHH----cCcccEEecC--cccHHHHHHHHHcC
Q 020082 87 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE----EGKIKTVALT--NFDTERLRIILENG 160 (331)
Q Consensus 87 ~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~----~Gkir~iGvS--~~~~~~l~~~~~~~ 160 (331)
.++.+.|.+.++. ++..|...+-|+.=..| +..+ ++-+.+.++.+++ .|.++.++++ ..+.++++++.+.|
T Consensus 114 ~Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p-~~~~-~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~LkeaG 190 (469)
T PRK09613 114 KLTQEEIREEVKA-LEDMGHKRLALVAGEDP-PNCD-IEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEAG 190 (469)
T ss_pred ECCHHHHHHHHHH-HHHCCCCEEEEEeCCCC-CCCC-HHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHcC
Confidence 4689999999986 67899777766422222 2223 5666677777665 5777777765 46889999999887
Q ss_pred CC-eeeeccccccc-----cc-----Chh--hhHHHHHHHhCCeEEEcccc
Q 020082 161 IP-VVSNQVQHSVV-----DM-----RPQ--QKMAELCQLTGVKLITYGTV 198 (331)
Q Consensus 161 ~~-~~~vq~~~nl~-----~~-----~~~--~~~~~~~~~~gi~via~~~l 198 (331)
+. +.+.|--||.- .. ..+ -..++.+++.|+.-+..+.|
T Consensus 191 v~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L 241 (469)
T PRK09613 191 IGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVL 241 (469)
T ss_pred CCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEE
Confidence 53 66666666531 11 111 25788888989875544433
No 46
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=68.54 E-value=1.1e+02 Score=28.99 Aligned_cols=106 Identities=13% Similarity=0.122 Sum_probs=64.1
Q ss_pred HHHHHHHHHHH-----------HHcCCCcccEEEEecCCC--C--CchHHHHHHHHHHHHHc-CcccEEecC---cccHH
Q 020082 91 SIVRESIDVSR-----------RRMDVPCLDMLQFHWWDY--S--NPGYLDALNHLTDLKEE-GKIKTVALT---NFDTE 151 (331)
Q Consensus 91 ~~i~~~~~~SL-----------~rLg~d~lDl~~lH~~d~--~--~~~~~e~~~~l~~l~~~-Gkir~iGvS---~~~~~ 151 (331)
+.+++.+++-. +.+| +|++.||.-.. . ....++..++.++..+. +.=--|+=| ..+++
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~e 204 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPL 204 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHH
Confidence 55777776655 4454 78888886422 1 11134666666666443 333344433 45788
Q ss_pred HHHHHHHc--CCCeeeecccccccccChhhhHHHHHHHhCCeEEEccccccccc
Q 020082 152 RLRIILEN--GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLL 203 (331)
Q Consensus 152 ~l~~~~~~--~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l~~G~L 203 (331)
.++++++. |.++-++-..... .-+.+.+.|+++|..+++++|..-+.+
T Consensus 205 VLeaaLe~~~G~kpLL~SAt~e~----Ny~~ia~lAk~yg~~Vvv~s~~Din~a 254 (389)
T TIGR00381 205 VLEKAAEVAEGERCLLASANLDL----DYEKIANAAKKYGHVVLSWTIMDINMQ 254 (389)
T ss_pred HHHHHHHHhCCCCcEEEecCchh----hHHHHHHHHHHhCCeEEEEcCCcHHHH
Confidence 89888873 3344333222111 235799999999999999998765543
No 47
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=68.10 E-value=87 Score=27.75 Aligned_cols=104 Identities=14% Similarity=0.076 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEE-EecCCCCC--c--hHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCC
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSN--P--GYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 162 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~~-lH~~d~~~--~--~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~ 162 (331)
.+.+.+.+..++. -.-|-|.||+=. --+|+... . ..+.+...++.+++.-++ -|.+-+++++.++++++.+.+
T Consensus 21 ~~~~~~~~~a~~~-~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRM-VEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHH-HHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCCC
Confidence 3666666666554 467999999952 33443211 1 123466677777665333 378889999999999997733
Q ss_pred eeeecccccccccChhhhHHHHHHHhCCeEEEcccc
Q 020082 163 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 198 (331)
Q Consensus 163 ~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l 198 (331)
+ +|- .|..+.. .++++.+++.|+.++.+..-
T Consensus 99 i-INd--is~~~~~--~~~~~l~~~~~~~vV~m~~~ 129 (258)
T cd00423 99 I-IND--VSGGRGD--PEMAPLAAEYGAPVVLMHMD 129 (258)
T ss_pred E-EEe--CCCCCCC--hHHHHHHHHcCCCEEEECcC
Confidence 2 222 2222111 47899999999999988753
No 48
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=67.63 E-value=44 Score=30.45 Aligned_cols=142 Identities=19% Similarity=0.250 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEEecCCCC---CchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHH--HHcCCCe
Q 020082 89 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS---NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII--LENGIPV 163 (331)
Q Consensus 89 ~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~---~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~--~~~~~~~ 163 (331)
..+.+++.+.+-+++.|+|++=++.+-.-... .+....++++|++..+++.-. .++.++-.. ++.|.++
T Consensus 130 ~~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~------~~aS~~YA~AAl~~g~~f 203 (295)
T PF07994_consen 130 QVEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE------ISASMLYAYAALEAGVPF 203 (295)
T ss_dssp HHHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT------HHHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc------CChHHHHHHHHHHCCCCe
Confidence 35668899999999999884433333222110 111235788888888876532 234433322 2335333
Q ss_pred eeecccccccccChhhhHHHHHHHhCCeEEEcc---ccccccccccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCch
Q 020082 164 VSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG---TVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWS 240 (331)
Q Consensus 164 ~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~---~l~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (331)
+|=++=+.. .. ..+.+.++++|+.+..-- +++.|++-
T Consensus 204 -vN~tP~~~a-~~--P~l~ela~~~gvpi~GdD~KT~lAAplvl------------------------------------ 243 (295)
T PF07994_consen 204 -VNGTPSNIA-DD--PALVELAEEKGVPIAGDDGKTPLAAPLVL------------------------------------ 243 (295)
T ss_dssp -EE-SSSTTT-TS--HHHHHHHHHHTEEEEESSBS-HHHHHHHH------------------------------------
T ss_pred -EeccCcccc-CC--HHHHHHHHHcCCCeecchHhhhhhhHHHH------------------------------------
Confidence 222222222 12 378999999999987542 33333221
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeecccC
Q 020082 241 QFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRL 283 (331)
Q Consensus 241 ~~~~~~~~l~~ia~~~g~s~aq~Al~~~l~~~~v~~~i~G~~~ 283 (331)
+ +-++.++|.+.|+.-.+-.++|.+..|.+. .|...
T Consensus 244 ---D-Lirl~~la~r~g~~Gv~~~ls~ffK~P~~~---~g~~~ 279 (295)
T PF07994_consen 244 ---D-LIRLAKLALRRGMGGVQEWLSFFFKSPMVP---PGPPQ 279 (295)
T ss_dssp ---H-HHHHHHHHHHTTS-EEHHHHHHHBSS-T-----TTSTT
T ss_pred ---H-HHHHHHHHHHcCCCChhHHHHHHhcCCCcc---CCCCC
Confidence 1 246788899999988899999999999642 55544
No 49
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=67.09 E-value=81 Score=28.04 Aligned_cols=71 Identities=14% Similarity=0.031 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHHHHc------CCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHH
Q 020082 87 KMTSSIVRESIDVSRRRM------DVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE 158 (331)
Q Consensus 87 ~~~~~~i~~~~~~SL~rL------g~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~ 158 (331)
..+.+.-.+-.+-+++-+ +++.|=|=.+..+..-.|+..|++++-+.|+++|-+- +=.++-++-..+++.+
T Consensus 80 c~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~V-lPY~~~D~v~a~rLed 156 (267)
T CHL00162 80 CQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTV-LPYINADPMLAKHLED 156 (267)
T ss_pred CCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEE-eecCCCCHHHHHHHHH
Confidence 457777666666667766 6787777777677777777889999999999998752 2222333444444444
No 50
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=64.44 E-value=25 Score=30.12 Aligned_cols=88 Identities=17% Similarity=0.184 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCc-ccHHHHHHHHHcCCCeeeec
Q 020082 89 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQ 167 (331)
Q Consensus 89 ~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~-~~~~~l~~~~~~~~~~~~vq 167 (331)
+++...+- -+.|-.-|.+.+.+=+ .++ ..++.+++++++..=-.||..+ .++++++.+++.|-.|.
T Consensus 18 ~~e~a~~~-~~al~~~Gi~~iEit~------~t~---~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi--- 84 (204)
T TIGR01182 18 DVDDALPL-AKALIEGGLRVLEVTL------RTP---VALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI--- 84 (204)
T ss_pred CHHHHHHH-HHHHHHcCCCEEEEeC------CCc---cHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE---
Confidence 45555444 4457778877666633 223 3555566666554335789887 58999999999886554
Q ss_pred ccccccccChhhhHHHHHHHhCCeEEE
Q 020082 168 VQHSVVDMRPQQKMAELCQLTGVKLIT 194 (331)
Q Consensus 168 ~~~nl~~~~~~~~~~~~~~~~gi~via 194 (331)
.++ ....+++++|+++||.++.
T Consensus 85 --vsP---~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 85 --VSP---GLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred --ECC---CCCHHHHHHHHHcCCcEEC
Confidence 222 2345899999999998885
No 51
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=64.03 E-value=1.1e+02 Score=27.28 Aligned_cols=100 Identities=15% Similarity=0.159 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEE-EEecCCCCC-chHHH---HHHHHHHHHHc-CcccEEecCcccHHHHHHHHHcCC
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDML-QFHWWDYSN-PGYLD---ALNHLTDLKEE-GKIKTVALTNFDTERLRIILENGI 161 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~-~lH~~d~~~-~~~~e---~~~~l~~l~~~-Gkir~iGvS~~~~~~l~~~~~~~~ 161 (331)
.+++.+.+..++- -.-|.|+||+= .--+|+... ...+| +...++.+++. +. -+.+-++.++.++++++.|.
T Consensus 20 ~~~~~~~~~a~~~-~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERM-LEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHH-HHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 4667776666554 35689999993 112233221 11223 66666667666 43 37888999999999999874
Q ss_pred CeeeecccccccccChhhhHHHHHHHhCCeEEEcc
Q 020082 162 PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 196 (331)
Q Consensus 162 ~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~ 196 (331)
++ ++-+ +... ..++++.+++.|..++.+.
T Consensus 97 ~i-INsi--s~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 97 DI-INDV--SGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred CE-EEEC--CCCC---CchhHHHHHHcCCcEEEEe
Confidence 43 2222 2221 3478999999999999865
No 52
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=63.67 E-value=1.1e+02 Score=27.32 Aligned_cols=105 Identities=9% Similarity=0.049 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCC-----chHHHHHHHHHHHHHcCcccEEecCcc---cHHHHHHHHH
Q 020082 87 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-----PGYLDALNHLTDLKEEGKIKTVALTNF---DTERLRIILE 158 (331)
Q Consensus 87 ~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~-----~~~~e~~~~l~~l~~~Gkir~iGvS~~---~~~~l~~~~~ 158 (331)
.++.+... .+-+.|.++|+|+|++-+........ ..-.+.++.+..+.+ +..+..+++.. ..+.+..+.+
T Consensus 16 ~f~~~~~~-~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~~ 93 (266)
T cd07944 16 DFGDEFVK-AIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPASG 93 (266)
T ss_pred cCCHHHHH-HHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHhc
Confidence 45666544 45556999999999997765432110 001355666655543 34666666543 3566777766
Q ss_pred cCCCeeeecccccccccChhhhHHHHHHHhCCeEEEc
Q 020082 159 NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 195 (331)
Q Consensus 159 ~~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~ 195 (331)
.+++..-+....|-+ ..-.+++++++++|+.+...
T Consensus 94 ~gv~~iri~~~~~~~--~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 94 SVVDMIRVAFHKHEF--DEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred CCcCEEEEecccccH--HHHHHHHHHHHHCCCeEEEE
Confidence 554443333333322 22357899999999876543
No 53
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=63.34 E-value=56 Score=32.10 Aligned_cols=65 Identities=6% Similarity=-0.064 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHcCcccE----EecCcccHHHHHHHHHc--CCCeeeecccccccccChhhhHHHHHHHhCC
Q 020082 124 YLDALNHLTDLKEEGKIKT----VALTNFDTERLRIILEN--GIPVVSNQVQHSVVDMRPQQKMAELCQLTGV 190 (331)
Q Consensus 124 ~~e~~~~l~~l~~~Gkir~----iGvS~~~~~~l~~~~~~--~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi 190 (331)
.++..++++.+++.|.... +|+-+.+.+.+++.++. ..+++. +.++++...+..++.+.+++.+.
T Consensus 322 ~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~--~~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 322 TSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQ--ANWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCc--eEEEEecCCCCcHHHHHHHhhcc
Confidence 5678899999999997433 46667778877766642 233443 34566667777888888888764
No 54
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=63.14 E-value=1.3e+02 Score=28.14 Aligned_cols=98 Identities=10% Similarity=0.062 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcC-cccEEecCcccHHHHHHHHHcCCCeeee
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVVSN 166 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~G-kir~iGvS~~~~~~l~~~~~~~~~~~~v 166 (331)
++.+...+ +-+.|.++|+++|++- .|.. . +.-++.++.+.+.+ ..+..+++....+.++.+.+.+.+...+
T Consensus 20 ~s~~~k~~-ia~~L~~~Gv~~IEvG---~p~~-~---~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i 91 (365)
T TIGR02660 20 FTAAEKLA-IARALDEAGVDELEVG---IPAM-G---EEERAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVHI 91 (365)
T ss_pred CCHHHHHH-HHHHHHHcCCCEEEEe---CCCC-C---HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEEE
Confidence 56665444 4555999999999985 2321 1 23356666666664 3677777877888898888766443222
Q ss_pred ccccccc------ccChh------hhHHHHHHHhCCeEE
Q 020082 167 QVQHSVV------DMRPQ------QKMAELCQLTGVKLI 193 (331)
Q Consensus 167 q~~~nl~------~~~~~------~~~~~~~~~~gi~vi 193 (331)
-+.-|-. ....+ .+.+++++++|..+.
T Consensus 92 ~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 92 SIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 2222211 11111 267889999997654
No 55
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=62.92 E-value=47 Score=28.73 Aligned_cols=87 Identities=16% Similarity=0.150 Sum_probs=58.1
Q ss_pred ccEEEEecCCCCCchHHHHHHHHHHHHHcCccc-EEecCcccHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHH
Q 020082 109 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 186 (331)
Q Consensus 109 lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~-~~~~~~~~~~~ 186 (331)
+++.++-.|-+.. -++.+.+|.+...+. ..+=|.++.+.+.++++.+ .++++|+..+..-. ..-..+...|+
T Consensus 120 ~~i~~iEeP~~~~-----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~-~~d~~~~k~~~~GGi~~~~~i~~~a~ 193 (229)
T cd00308 120 YGLAWIEEPCAPD-----DLEGYAALRRRTGIPIAADESVTTVDDALEALELG-AVDILQIKPTRVGGLTESRRAADLAE 193 (229)
T ss_pred cCCCeEECCCCcc-----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcC-CCCEEecCccccCCHHHHHHHHHHHH
Confidence 5666666654322 345677777777665 4455567788887777754 47888877665321 12257889999
Q ss_pred HhCCeEEEccccccc
Q 020082 187 LTGVKLITYGTVMGG 201 (331)
Q Consensus 187 ~~gi~via~~~l~~G 201 (331)
++|+.++..+.+..|
T Consensus 194 ~~gi~~~~~~~~~s~ 208 (229)
T cd00308 194 AFGIRVMVHGTLESS 208 (229)
T ss_pred HcCCEEeecCCCCCH
Confidence 999999998876544
No 56
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=62.47 E-value=29 Score=29.71 Aligned_cols=88 Identities=13% Similarity=0.161 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCc-ccHHHHHHHHHcCCCeeeec
Q 020082 89 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQ 167 (331)
Q Consensus 89 ~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~-~~~~~l~~~~~~~~~~~~vq 167 (331)
+++...+-++ .|-+-|...+.+=+ .++ +.++.+++++++..=-.||..+ .+.++++++++.|-.|.
T Consensus 14 ~~~~a~~ia~-al~~gGi~~iEit~------~tp---~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fi--- 80 (201)
T PRK06015 14 DVEHAVPLAR-ALAAGGLPAIEITL------RTP---AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFI--- 80 (201)
T ss_pred CHHHHHHHHH-HHHHCCCCEEEEeC------CCc---cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEE---
Confidence 4555555444 46677877666632 233 3555566666554335789887 58999999999885553
Q ss_pred ccccccccChhhhHHHHHHHhCCeEEE
Q 020082 168 VQHSVVDMRPQQKMAELCQLTGVKLIT 194 (331)
Q Consensus 168 ~~~nl~~~~~~~~~~~~~~~~gi~via 194 (331)
.++ ....+++++|+++||.++.
T Consensus 81 --vSP---~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 81 --VSP---GTTQELLAAANDSDVPLLP 102 (201)
T ss_pred --ECC---CCCHHHHHHHHHcCCCEeC
Confidence 222 2345899999999998884
No 57
>PRK06424 transcription factor; Provisional
Probab=60.46 E-value=33 Score=27.61 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeecccCCcHhHHHHhhchhcCCCC
Q 020082 244 VLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLD 301 (331)
Q Consensus 244 ~~~~~l~~ia~~~g~s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~~~a~~~~L~ 301 (331)
.+-+.++.+.++.|+|..++|-+--.+...|...--|-+..+.+.+....++++..|+
T Consensus 84 ~~g~~Ir~lRe~~GLSQ~eLA~~iGvs~stIskiE~G~~~Ps~~~l~kLa~~Lgvsl~ 141 (144)
T PRK06424 84 DYAELVKNARERLSMSQADLAAKIFERKNVIASIERGDLLPDIKTARKLEKILGITLI 141 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCC
Confidence 4446778888888999888886654443333333333333334555555555555444
No 58
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=59.37 E-value=52 Score=29.25 Aligned_cols=104 Identities=13% Similarity=0.091 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEEecCCC-----CCchHHHHHHHHHHHHHc-CcccEEecC---cccHHHHHHHHH
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY-----SNPGYLDALNHLTDLKEE-GKIKTVALT---NFDTERLRIILE 158 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~-----~~~~~~e~~~~l~~l~~~-Gkir~iGvS---~~~~~~l~~~~~ 158 (331)
++.+...+ +-+.|.++|++++++-+...... ..+ ....++.++.+++. +.++...++ ......++.+.+
T Consensus 19 ~~~~~k~~-i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~-~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 96 (263)
T cd07943 19 FTLEQVRA-IARALDAAGVPLIEVGHGDGLGGSSLNYGFA-AHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAAD 96 (263)
T ss_pred cCHHHHHH-HHHHHHHcCCCEEEeecCCCCCCcccccCCC-CCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHH
Confidence 45565444 44559999999999976532110 000 11234445555332 346666554 334667777777
Q ss_pred cCCCeeeecccccccccChhhhHHHHHHHhCCeEEEc
Q 020082 159 NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 195 (331)
Q Consensus 159 ~~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~ 195 (331)
.++ +.+.+.+..-+...-.+.+++++++|..+...
T Consensus 97 ~g~--~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 97 LGV--DVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred cCC--CEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 654 33444333212122357888899999765543
No 59
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=58.87 E-value=68 Score=29.55 Aligned_cols=92 Identities=11% Similarity=0.105 Sum_probs=51.2
Q ss_pred HHcCCCcccEEEEe-cCCCCCchHHHHHHHHHHHHHcCcc-cEEecCcc---cHHHHHHHHHc--CCCeeeecccccccc
Q 020082 102 RRMDVPCLDMLQFH-WWDYSNPGYLDALNHLTDLKEEGKI-KTVALTNF---DTERLRIILEN--GIPVVSNQVQHSVVD 174 (331)
Q Consensus 102 ~rLg~d~lDl~~lH-~~d~~~~~~~e~~~~l~~l~~~Gki-r~iGvS~~---~~~~l~~~~~~--~~~~~~vq~~~nl~~ 174 (331)
+.+|.|+||+-+.- .|+......++....++...+.=.+ -.|..|.. +++.++++++. +.++-.+-..
T Consensus 86 ~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat----- 160 (319)
T PRK04452 86 EEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAE----- 160 (319)
T ss_pred HHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECC-----
Confidence 47788888775432 2322111134444444444333222 22555533 67888888873 3334322222
Q ss_pred cChhhhHHHHHHHhCCeEEEcccc
Q 020082 175 MRPQQKMAELCQLTGVKLITYGTV 198 (331)
Q Consensus 175 ~~~~~~~~~~~~~~gi~via~~~l 198 (331)
.+.-+.+.+.|+++|..+++.+|.
T Consensus 161 ~en~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 161 EDNYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred HHHHHHHHHHHHHhCCeEEEEcHH
Confidence 112357999999999999999864
No 60
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=58.71 E-value=35 Score=29.09 Aligned_cols=88 Identities=14% Similarity=0.140 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCc-ccHHHHHHHHHcCCCeeeec
Q 020082 89 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQ 167 (331)
Q Consensus 89 ~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~-~~~~~l~~~~~~~~~~~~vq 167 (331)
+++...+ +-+.|-.-|...+.+= + .++...++++.+.+-.. =-.||..+ .+.++++.+++.|-.|.+
T Consensus 18 ~~~~a~~-~~~al~~gGi~~iEiT---~---~t~~a~~~I~~l~~~~p---~~~vGAGTV~~~e~a~~a~~aGA~Fiv-- 85 (196)
T PF01081_consen 18 DPEDAVP-IAEALIEGGIRAIEIT---L---RTPNALEAIEALRKEFP---DLLVGAGTVLTAEQAEAAIAAGAQFIV-- 85 (196)
T ss_dssp SGGGHHH-HHHHHHHTT--EEEEE---T---TSTTHHHHHHHHHHHHT---TSEEEEES--SHHHHHHHHHHT-SEEE--
T ss_pred CHHHHHH-HHHHHHHCCCCEEEEe---c---CCccHHHHHHHHHHHCC---CCeeEEEeccCHHHHHHHHHcCCCEEE--
Confidence 3444433 3445666776655552 2 22333445554443332 24689887 589999999998855542
Q ss_pred ccccccccChhhhHHHHHHHhCCeEEE
Q 020082 168 VQHSVVDMRPQQKMAELCQLTGVKLIT 194 (331)
Q Consensus 168 ~~~nl~~~~~~~~~~~~~~~~gi~via 194 (331)
+ +....+++++|+++||.++.
T Consensus 86 ---S---P~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 86 ---S---PGFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp ---E---SS--HHHHHHHHHHTSEEEE
T ss_pred ---C---CCCCHHHHHHHHHcCCcccC
Confidence 2 23346899999999999985
No 61
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=58.53 E-value=1.2e+02 Score=29.00 Aligned_cols=88 Identities=14% Similarity=0.076 Sum_probs=58.1
Q ss_pred cEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCCeeeecccccccccC-hhhhHHHHHHHh
Q 020082 110 DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLT 188 (331)
Q Consensus 110 Dl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~~-~~~~~~~~~~~~ 188 (331)
|-+.+..|. ...++..++.+.+.+.++.+-+...+.+.++++++...+..++..+-|+.-.- .-+++.+.|+++
T Consensus 100 D~Vvv~~p~-----Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~ 174 (405)
T PRK08776 100 DTLVVPHDA-----YGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKV 174 (405)
T ss_pred CEEEEccCC-----chHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHc
Confidence 555554443 23455556665555556666666667888887775445666777777775332 235789999999
Q ss_pred CCeEEEcccccccc
Q 020082 189 GVKLITYGTVMGGL 202 (331)
Q Consensus 189 gi~via~~~l~~G~ 202 (331)
|+-++.=.+++.+.
T Consensus 175 gi~vIvD~a~a~~~ 188 (405)
T PRK08776 175 GALTVVDNTFLSPA 188 (405)
T ss_pred CCEEEEECCCcccc
Confidence 99999888877654
No 62
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=58.28 E-value=66 Score=27.68 Aligned_cols=83 Identities=12% Similarity=0.091 Sum_probs=51.3
Q ss_pred HHHcCCCcccEEEEe-cCCCCCchHHHHHHHHHHHHHcCc-ccEEecC-cccHHHHHHHHHcCCCeeeecccccccccCh
Q 020082 101 RRRMDVPCLDMLQFH-WWDYSNPGYLDALNHLTDLKEEGK-IKTVALT-NFDTERLRIILENGIPVVSNQVQHSVVDMRP 177 (331)
Q Consensus 101 L~rLg~d~lDl~~lH-~~d~~~~~~~e~~~~l~~l~~~Gk-ir~iGvS-~~~~~~l~~~~~~~~~~~~vq~~~nl~~~~~ 177 (331)
...+|.||+=+.+.- +|-. .. . +. ..++.+.-. +..+||. |.+.+.+.++++. .+++++|++-..
T Consensus 18 a~~~gad~iG~If~~~SpR~-Vs-~-~~---a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~-~~ld~VQlHG~e----- 85 (208)
T COG0135 18 AAKAGADYIGFIFVPKSPRY-VS-P-EQ---AREIASAVPKVKVVGVFVNESIEEILEIAEE-LGLDAVQLHGDE----- 85 (208)
T ss_pred HHHcCCCEEEEEEcCCCCCc-CC-H-HH---HHHHHHhCCCCCEEEEECCCCHHHHHHHHHh-cCCCEEEECCCC-----
Confidence 456788988776554 3322 22 2 23 333333333 8899998 5678889888874 479999988763
Q ss_pred hhhHHHHHHHhC-CeEEEc
Q 020082 178 QQKMAELCQLTG-VKLITY 195 (331)
Q Consensus 178 ~~~~~~~~~~~g-i~via~ 195 (331)
+.+.++..++.. +.++-.
T Consensus 86 ~~~~~~~l~~~~~~~v~ka 104 (208)
T COG0135 86 DPEYIDQLKEELGVPVIKA 104 (208)
T ss_pred CHHHHHHHHhhcCCceEEE
Confidence 234566666553 555533
No 63
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=58.01 E-value=77 Score=31.41 Aligned_cols=50 Identities=26% Similarity=0.282 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEEecC--CCCCchHHHHHHHHHHHHHcCcccEE
Q 020082 91 SIVRESIDVSRRRMDVPCLDMLQFHWW--DYSNPGYLDALNHLTDLKEEGKIKTV 143 (331)
Q Consensus 91 ~~i~~~~~~SL~rLg~d~lDl~~lH~~--d~~~~~~~e~~~~l~~l~~~Gkir~i 143 (331)
+...+-++..++..+-.+.+ -|.. .+....+.+.++-|-+++++|+||++
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~---~~~ivvGFs~~~il~a~d~lielI~sGkIKgv 411 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSE---KHKIVVGFSHESILAAADPLIELIASGKIKGV 411 (576)
T ss_pred hhHHHHHHHHHhccCCcccc---cceeEEeecHHHHHHHHHHHHHHHhcCCcceE
Confidence 55777788888888877777 2221 11112245677788899999999987
No 64
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=58.01 E-value=1.3e+02 Score=26.38 Aligned_cols=109 Identities=14% Similarity=0.102 Sum_probs=72.7
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCCeee
Q 020082 86 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS 165 (331)
Q Consensus 86 ~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~ 165 (331)
...+.+.-.+-..-+++-+++|.|-|=.+-.++.-.||..+++++.|.|+++|-+-. =-++-++-..+++.+.| +.+
T Consensus 78 Gc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~Vl-PY~~dD~v~arrLee~G--caa 154 (262)
T COG2022 78 GCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVL-PYTTDDPVLARRLEEAG--CAA 154 (262)
T ss_pred ccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEe-eccCCCHHHHHHHHhcC--ceE
Confidence 346888888888999999999999998888888777888899999999999997642 22334555555665533 444
Q ss_pred ecccccccc-----cChhhhHHHHHHHhCCeEEEcccc
Q 020082 166 NQVQHSVVD-----MRPQQKMAELCQLTGVKLITYGTV 198 (331)
Q Consensus 166 vq~~~nl~~-----~~~~~~~~~~~~~~gi~via~~~l 198 (331)
++---+++- +.+ ..+.-...+.+|.+|.-.-+
T Consensus 155 vMPl~aPIGSg~G~~n~-~~l~iiie~a~VPviVDAGi 191 (262)
T COG2022 155 VMPLGAPIGSGLGLQNP-YNLEIIIEEADVPVIVDAGI 191 (262)
T ss_pred eccccccccCCcCcCCH-HHHHHHHHhCCCCEEEeCCC
Confidence 443333321 111 12333345558998876644
No 65
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=57.86 E-value=59 Score=30.85 Aligned_cols=16 Identities=6% Similarity=0.075 Sum_probs=14.0
Q ss_pred CCCcccEEEEecCCCC
Q 020082 105 DVPCLDMLQFHWWDYS 120 (331)
Q Consensus 105 g~d~lDl~~lH~~d~~ 120 (331)
.+++||+|..+.|++.
T Consensus 144 ~i~si~iy~g~~g~~~ 159 (389)
T COG1748 144 EIESIDIYVGGLGEHG 159 (389)
T ss_pred cccEEEEEEecCCCCC
Confidence 5899999999998776
No 66
>PRK07945 hypothetical protein; Provisional
Probab=54.81 E-value=1.8e+02 Score=26.97 Aligned_cols=82 Identities=13% Similarity=0.117 Sum_probs=52.8
Q ss_pred CCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCc---------------ccHHH-HHHHHHcCCCeeeeccc
Q 020082 106 VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---------------FDTER-LRIILENGIPVVSNQVQ 169 (331)
Q Consensus 106 ~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~---------------~~~~~-l~~~~~~~~~~~~vq~~ 169 (331)
.||+ +..+|+.... . .++..+.|.++.+.+++..+|--. +..+. ++.+.+.+..+.+|-..
T Consensus 191 ~D~v-IgSvH~~~~~-~-~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g~~lEINt~~ 267 (335)
T PRK07945 191 LDVV-VASVHSKLRM-D-AAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHGTAVEINSRP 267 (335)
T ss_pred CCEE-EEEeecCCCC-C-HHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhCCEEEEeCCC
Confidence 4666 6778986432 2 456778888888899988888432 12233 33444556666666533
Q ss_pred ccccccChhhhHHHHHHHhCCeEE
Q 020082 170 HSVVDMRPQQKMAELCQLTGVKLI 193 (331)
Q Consensus 170 ~nl~~~~~~~~~~~~~~~~gi~vi 193 (331)
.. ..+...+++.|++.|+.++
T Consensus 268 ~r---~~P~~~il~~a~e~G~~vt 288 (335)
T PRK07945 268 ER---RDPPTRLLRLALDAGCLFS 288 (335)
T ss_pred CC---CCChHHHHHHHHHcCCeEE
Confidence 32 3455689999999999753
No 67
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=54.68 E-value=1.1e+02 Score=29.02 Aligned_cols=166 Identities=14% Similarity=0.125 Sum_probs=73.5
Q ss_pred ccceeeecc-------ccCCCCC-CchhhHHHHHHHHHHHhhhcCCccEEECCC-CchHHHHHHHHhhhhcCCCccchhe
Q 020082 4 VERDVADEW-------RVGPYRP-GRRRRCHASLRRCRSHHLRHGRSLSFDFVD-GPAEDLYGIFINRVRRERPPEFLDK 74 (331)
Q Consensus 4 vS~l~lGt~-------~~g~~~~-~~~~~~~~~l~~al~~~~~~GGin~~DTA~-g~sE~~lG~~l~~~~~~~~~~~~~~ 74 (331)
+.++|+|.. ++|+... .+.+.-.+.++.|++.|- -++.|-+. |.-..+--..|+..+ ..+.+
T Consensus 49 ~~p~~IG~gl~tKVNaNIGtS~~~~d~~~E~~K~~~A~~~GA----DtvMDLStggdl~~iR~~il~~~~-----vpvGT 119 (420)
T PF01964_consen 49 LKPVGIGKGLRTKVNANIGTSSDYSDIEEELEKLKIAEKAGA----DTVMDLSTGGDLDEIRRAILENSP-----VPVGT 119 (420)
T ss_dssp -----EETTS--EEEEEE--------HHHHHHHHHHHHHTT-----SEEEE---STTHHHHHHHHHHT-S-----S-EEE
T ss_pred CCceEecCCCceEEEeeecCCCCCCCHHHHHHHHHHHHHhCC----CEEEEcCCCCCHHHHHHHHHHhCC-----Ccccc
Confidence 456666653 4565333 355666777888877732 34688888 444444334444322 22333
Q ss_pred eeeccc---ccCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHH
Q 020082 75 VRGLTK---WVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTE 151 (331)
Q Consensus 75 ~~~~~k---~~~~~~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~ 151 (331)
+-++.- ......+++++.+.+.+++-.+. =+|++-+|.-- +.+.++.++++|++ .|+-+-...
T Consensus 120 VPiYqa~~~~~~~~~~~t~d~~~~~ie~qa~~----GVDfmtiH~gi--------t~~~~~~~~~~~R~--~giVSRGGs 185 (420)
T PF01964_consen 120 VPIYQAAIRKGGSIVDMTEDDFFDVIEKQAKD----GVDFMTIHCGI--------TRETLERLKKSGRI--MGIVSRGGS 185 (420)
T ss_dssp -HHHHHHHHTTT-GGG--HHHHHHHHHHHHHH----T--EEEE-TT----------GGGGGGGT--TSS--S----HHHH
T ss_pred chHHHHHHHhCCChhhCCHHHHHHHHHHHHHc----CCCEEEEccch--------hHHHHHHHhhhccc--cCccccchH
Confidence 322211 11223467899998888876653 48899999853 34457788888875 455554444
Q ss_pred HHHHHHH-cCCCeeeecccccccccChhhhHHHHHHHhCCeEEEccccccc
Q 020082 152 RLRIILE-NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGG 201 (331)
Q Consensus 152 ~l~~~~~-~~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l~~G 201 (331)
-+...+. ++ .-|++-.. -+++++.|++++|.+---..|--|
T Consensus 186 ~l~~WM~~n~--------~ENPly~~-fD~lLeI~k~yDVtLSLGDglRPG 227 (420)
T PF01964_consen 186 ILAAWMLHNG--------KENPLYEH-FDRLLEIAKEYDVTLSLGDGLRPG 227 (420)
T ss_dssp HHHHHHHHHT--------S--HHHHT-HHHHHHHHTTTT-EEEE--TT--S
T ss_pred HHHHHHHhcC--------CcCcHHHh-HHHHHHHHHHhCeeEecccccCCC
Confidence 4444332 22 23444222 358999999999988644444333
No 68
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=54.60 E-value=1.9e+02 Score=27.29 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCC
Q 020082 126 DALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 162 (331)
Q Consensus 126 e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~ 162 (331)
...+.++.|+++|.+-.+|-|+-+.+++.++.+.|..
T Consensus 178 ~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~Ga~ 214 (380)
T TIGR00221 178 QHFELIRHLKDAGIIVSAGHTNATYELAKAAFKAGAT 214 (380)
T ss_pred ChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHcCCC
Confidence 3567888999999999999999999999999987643
No 69
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=54.55 E-value=17 Score=24.44 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=20.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Q 020082 247 QTLKRIASKHGVSIPVVAVRYILD 270 (331)
Q Consensus 247 ~~l~~ia~~~g~s~aq~Al~~~l~ 270 (331)
..+.+||+++|+++.++|..|+.-
T Consensus 14 ~~FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 14 LSFVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred CcHHHHHHHhCCCHHHHHHHHHHH
Confidence 457789999999999999999853
No 70
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=54.25 E-value=37 Score=29.10 Aligned_cols=67 Identities=13% Similarity=0.267 Sum_probs=44.1
Q ss_pred HHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecC-cccHHHHHHHHHcCCCeeeeccccc
Q 020082 101 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHS 171 (331)
Q Consensus 101 L~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS-~~~~~~l~~~~~~~~~~~~vq~~~n 171 (331)
...+|.|++=+.+......... .+....+.+.. .+.++.+||. |-+++.+.++++. ..++++|++-+
T Consensus 17 ~~~~GaD~iGfIf~~~SpR~V~--~~~a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~-~~~d~vQLHG~ 84 (207)
T PRK13958 17 ASQLPIDAIGFIHYEKSKRHQT--ITQIKKLASAV-PNHIDKVCVVVNPDLTTIEHILSN-TSINTIQLHGT 84 (207)
T ss_pred HHHcCCCEEEEecCCCCcccCC--HHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh-CCCCEEEECCC
Confidence 4569999998875443222222 23444444433 2568899997 6788999888873 47899998764
No 71
>PRK13753 dihydropteroate synthase; Provisional
Probab=54.16 E-value=1.7e+02 Score=26.46 Aligned_cols=103 Identities=13% Similarity=0.083 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEE-EecCCCC-Cch---HHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCC
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYS-NPG---YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 162 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~~-lH~~d~~-~~~---~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~ 162 (331)
++.+.+.+..+..+ .-|.|-||+=- -.+|... .+. ++.+...++.+++.+. -|.|-++.++.++++++.|..
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~aGad 98 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKRGVG 98 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHcCCC
Confidence 46666666666643 55888888843 2345432 111 2334578888887753 488889999999999998754
Q ss_pred eeeecccccccccChhhhHHHHHHHhCCeEEEccccc
Q 020082 163 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVM 199 (331)
Q Consensus 163 ~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l~ 199 (331)
+. |- .+-++ ...+.+.+.+.+++++.+...+
T Consensus 99 iI-ND--Vsg~~---d~~~~~vva~~~~~vVlmH~~~ 129 (279)
T PRK13753 99 YL-ND--IQGFP---DPALYPDIAEADCRLVVMHSAQ 129 (279)
T ss_pred EE-Ee--CCCCC---chHHHHHHHHcCCCEEEEecCC
Confidence 32 11 12221 3468888999999999887643
No 72
>PRK06740 histidinol-phosphatase; Validated
Probab=54.16 E-value=1.8e+02 Score=26.98 Aligned_cols=99 Identities=12% Similarity=0.128 Sum_probs=58.5
Q ss_pred HHHHHHHHHcCCCcccEEEEecCCC---CCch-------------HHHHHHHHHHHHHcCcccEEecCc------ccH--
Q 020082 95 ESIDVSRRRMDVPCLDMLQFHWWDY---SNPG-------------YLDALNHLTDLKEEGKIKTVALTN------FDT-- 150 (331)
Q Consensus 95 ~~~~~SL~rLg~d~lDl~~lH~~d~---~~~~-------------~~e~~~~l~~l~~~Gkir~iGvS~------~~~-- 150 (331)
..++..|+....||+ +.-+|..+. ..+. .+.-++.+.++.+.|++..||=-. +.+
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~~~~~ 234 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNYRLDE 234 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCCCcch
Confidence 345556666777877 778897531 1111 122457788888999998888442 111
Q ss_pred ----HHHHH----HHHcCCCeeeecc-cc--cccccChhhhHHHHHHHhCCeEEE
Q 020082 151 ----ERLRI----ILENGIPVVSNQV-QH--SVVDMRPQQKMAELCQLTGVKLIT 194 (331)
Q Consensus 151 ----~~l~~----~~~~~~~~~~vq~-~~--nl~~~~~~~~~~~~~~~~gi~via 194 (331)
..+++ +.+.+..+.+|-. .+ ..-+..+...+++.|++.|+.++.
T Consensus 235 ~~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~~~il~~~~e~Gv~~tl 289 (331)
T PRK06740 235 NEQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPSPLFLQVLAKHEVPITL 289 (331)
T ss_pred hhhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcCHHHHHHHHHCCCeEEE
Confidence 13322 2345666776663 12 222233456799999999998653
No 73
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=54.14 E-value=27 Score=30.57 Aligned_cols=47 Identities=13% Similarity=0.185 Sum_probs=33.7
Q ss_pred cCCCCCCchhhHHHHHHHHHHHhhhcCCccEEECCC------CchHHHHHHHHh
Q 020082 14 VGPYRPGRRRRCHASLRRCRSHHLRHGRSLSFDFVD------GPAEDLYGIFIN 61 (331)
Q Consensus 14 ~g~~~~~~~~~~~~~l~~al~~~~~~GGin~~DTA~------g~sE~~lG~~l~ 61 (331)
||.-+...++++.++++.|+..|.+.| |+.|--|- ..+|...-++..
T Consensus 83 fGS~D~~~r~~aleiM~KaI~LA~dLG-IRtIQLAGYDVYYE~~d~eT~~rFi~ 135 (287)
T COG3623 83 FGSKDEATRQQALEIMEKAIQLAQDLG-IRTIQLAGYDVYYEEADEETRQRFIE 135 (287)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhC-ceeEeeccceeeeccCCHHHHHHHHH
Confidence 344334456789999999999999997 99998886 334444444444
No 74
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=53.69 E-value=83 Score=29.65 Aligned_cols=91 Identities=14% Similarity=0.068 Sum_probs=60.4
Q ss_pred EEEecCCCC----------CchHHHHHHHHHHHHHcCc----ccEEecC--cccHHHHHHHHH--cCC------Ceeeec
Q 020082 112 LQFHWWDYS----------NPGYLDALNHLTDLKEEGK----IKTVALT--NFDTERLRIILE--NGI------PVVSNQ 167 (331)
Q Consensus 112 ~~lH~~d~~----------~~~~~e~~~~l~~l~~~Gk----ir~iGvS--~~~~~~l~~~~~--~~~------~~~~vq 167 (331)
+.||.|+.. ...++++++++.+..++.. +-|+=+. |-++++.+++.+ .+. +.-+|-
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNL 311 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNL 311 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEE
Confidence 689998632 1127899999998865432 1233222 456666666665 255 678999
Q ss_pred ccccccccC----h-h---hhHHHHHHHhCCeEEEcccccccc
Q 020082 168 VQHSVVDMR----P-Q---QKMAELCQLTGVKLITYGTVMGGL 202 (331)
Q Consensus 168 ~~~nl~~~~----~-~---~~~~~~~~~~gi~via~~~l~~G~ 202 (331)
++||+.... + . ....+.++++||.+..+...+.-+
T Consensus 312 Ip~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~DI 354 (371)
T PRK14461 312 IPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGVEI 354 (371)
T ss_pred ecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcCh
Confidence 999997421 1 1 356777889999999998876543
No 75
>PRK08392 hypothetical protein; Provisional
Probab=53.23 E-value=1.5e+02 Score=25.43 Aligned_cols=81 Identities=14% Similarity=0.183 Sum_probs=49.6
Q ss_pred CCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcc-------c-HHHH----HHHHHcCCCeeeeccccccc
Q 020082 106 VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF-------D-TERL----RIILENGIPVVSNQVQHSVV 173 (331)
Q Consensus 106 ~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~-------~-~~~l----~~~~~~~~~~~~vq~~~nl~ 173 (331)
.||+ +.-+|.+... +..++-++.+.++.+.|.+.-+|=-.. . .+.+ +.+.+.|..+.+|- .+
T Consensus 86 ~D~v-I~SvH~~~~~-~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt-~~--- 159 (215)
T PRK08392 86 LDYV-IASVHEWFGR-PEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISS-RY--- 159 (215)
T ss_pred CCEE-EEEeecCcCC-cHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeC-CC---
Confidence 4655 6678944222 224667788888889999887775321 1 1232 33334566666664 22
Q ss_pred ccChhhhHHHHHHHhCCeEE
Q 020082 174 DMRPQQKMAELCQLTGVKLI 193 (331)
Q Consensus 174 ~~~~~~~~~~~~~~~gi~vi 193 (331)
+.+...+++.|++.|+.++
T Consensus 160 -~~p~~~~l~~~~~~G~~~~ 178 (215)
T PRK08392 160 -RVPDLEFIRECIKRGIKLT 178 (215)
T ss_pred -CCCCHHHHHHHHHcCCEEE
Confidence 2355679999999998654
No 76
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=52.97 E-value=1.9e+02 Score=26.73 Aligned_cols=74 Identities=12% Similarity=0.036 Sum_probs=58.0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHcC
Q 020082 86 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG 160 (331)
Q Consensus 86 ~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~ 160 (331)
..++.+...+-.+-+++-++++.|=|=.+.......++..+++++.+.|+++|.+-. =+++-++...+++.+.|
T Consensus 145 g~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~-~yc~~d~~~a~~l~~~g 218 (326)
T PRK11840 145 GCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVM-VYCSDDPIAAKRLEDAG 218 (326)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHhcC
Confidence 356888888888899999999988887777666666778999999999999999642 45555777777776654
No 77
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=52.91 E-value=1.5e+02 Score=27.52 Aligned_cols=103 Identities=14% Similarity=0.198 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEEecC-------CC-CCchHHHHHHHHHHHHHcCcccEEecC---cccHHHHHH
Q 020082 87 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWW-------DY-SNPGYLDALNHLTDLKEEGKIKTVALT---NFDTERLRI 155 (331)
Q Consensus 87 ~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~-------d~-~~~~~~e~~~~l~~l~~~Gkir~iGvS---~~~~~~l~~ 155 (331)
.++.+.+.+-+ +.|.+.|+++|.+-+.-.. .+ ..+ ..+.++.+...+ ...+...+. ..+.+.++.
T Consensus 21 ~f~~~~~~~i~-~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~-~~e~i~~~~~~~--~~~~~~~ll~pg~~~~~dl~~ 96 (337)
T PRK08195 21 QYTLEQVRAIA-RALDAAGVPVIEVTHGDGLGGSSFNYGFGAHT-DEEYIEAAAEVV--KQAKIAALLLPGIGTVDDLKM 96 (337)
T ss_pred ccCHHHHHHHH-HHHHHcCCCEEEeecCCCCCCccccCCCCCCC-HHHHHHHHHHhC--CCCEEEEEeccCcccHHHHHH
Confidence 45677655544 4599999999998532111 11 112 234444443332 334444433 235678888
Q ss_pred HHHcCCCeeeecccccccccChhhhHHHHHHHhCCeEEEc
Q 020082 156 ILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 195 (331)
Q Consensus 156 ~~~~~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~ 195 (331)
+.+.++.. +.+..+.-+...-.+.+++++++|..+...
T Consensus 97 a~~~gvd~--iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 97 AYDAGVRV--VRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHcCCCE--EEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 88766443 333333222222357899999999876654
No 78
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=52.24 E-value=29 Score=21.90 Aligned_cols=42 Identities=26% Similarity=0.360 Sum_probs=28.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCceeEeecccCCcHhHHHHhhchhcC
Q 020082 249 LKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFML 298 (331)
Q Consensus 249 l~~ia~~~g~s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~~~a~~~ 298 (331)
++.||+..|+|++.+. .+|+.+.- +...+ .+++.+.++.++.
T Consensus 2 i~dIA~~agvS~~TVS--r~ln~~~~----vs~~t--r~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVS--RVLNGPPR----VSEET--RERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHHH--HHHTTCSS----STHHH--HHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHHH--HHHhCCCC----CCHHH--HHHHHHHHHHHCC
Confidence 6789999999988654 55555532 45555 7777777766554
No 79
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=52.05 E-value=1.7e+02 Score=26.51 Aligned_cols=105 Identities=13% Similarity=0.066 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCccc------HHHHHHHHH--
Q 020082 87 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD------TERLRIILE-- 158 (331)
Q Consensus 87 ~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~------~~~l~~~~~-- 158 (331)
..+.+.+.+-...-++.|.-.-+|++.+-....... .+.+++.+++. +|=-+|+++..+ ...+.++..
T Consensus 126 ~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i~E-a~Aiv~l~~~~---s~p~wISfT~~d~~~lr~Gt~l~eaa~~~ 201 (300)
T COG2040 126 GASQDALYKFHRPRIEALNEAGADLLACETLPNITE-AEAIVQLVQEF---SKPAWISFTLNDDTRLRDGTPLSEAAAIL 201 (300)
T ss_pred CccHHHHHHHHHHHHHHHHhCCCcEEeecccCChHH-HHHHHHHHHHh---CCceEEEEEeCCCCccCCCccHHHHHHHH
Confidence 456676666677777778777799998876543332 34555555555 888899998652 233455543
Q ss_pred cCC-CeeeecccccccccChhhhHHHHH--HHhCCeEEEccc
Q 020082 159 NGI-PVVSNQVQHSVVDMRPQQKMAELC--QLTGVKLITYGT 197 (331)
Q Consensus 159 ~~~-~~~~vq~~~nl~~~~~~~~~~~~~--~~~gi~via~~~ 197 (331)
.+. ++.++-+.+.- .+.-..+++.. +..++++++|--
T Consensus 202 ~~~~~iaa~gvNC~~--p~~~~a~i~~l~~~~~~~piivYPN 241 (300)
T COG2040 202 AGLPNIAALGVNCCH--PDHIPAAIEELSKLLTGKPIIVYPN 241 (300)
T ss_pred hcCcchhheeeccCC--hhhhHHHHHHHHhcCCCCceEEcCC
Confidence 243 34444444332 22234566666 334788888854
No 80
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=51.23 E-value=1.5e+02 Score=25.75 Aligned_cols=91 Identities=9% Similarity=0.085 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHH-HHHHcCcccEEecCc-ccHHHHHHHHHcCCCeeee
Q 020082 89 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLT-DLKEEGKIKTVALTN-FDTERLRIILENGIPVVSN 166 (331)
Q Consensus 89 ~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~-~l~~~Gkir~iGvS~-~~~~~l~~~~~~~~~~~~v 166 (331)
+++...+-+ +.|-.-|...+.+=+ .++.-.+.++.|. +..++.-=-.||+.+ .++++++.+++.|-.|.
T Consensus 25 ~~~~a~~~~-~al~~gGi~~iEiT~------~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~Fi-- 95 (222)
T PRK07114 25 DVEVAKKVI-KACYDGGARVFEFTN------RGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFI-- 95 (222)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEeC------CCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEE--
Confidence 455555544 457778877776632 3333345555553 223332223689887 58999999999885553
Q ss_pred cccccccccChhhhHHHHHHHhCCeEEE
Q 020082 167 QVQHSVVDMRPQQKMAELCQLTGVKLIT 194 (331)
Q Consensus 167 q~~~nl~~~~~~~~~~~~~~~~gi~via 194 (331)
.+ +....+++++|+++||.++.
T Consensus 96 ---Vs---P~~~~~v~~~~~~~~i~~iP 117 (222)
T PRK07114 96 ---VT---PLFNPDIAKVCNRRKVPYSP 117 (222)
T ss_pred ---EC---CCCCHHHHHHHHHcCCCEeC
Confidence 22 22345899999999998884
No 81
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=51.09 E-value=81 Score=29.50 Aligned_cols=71 Identities=14% Similarity=0.099 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCccc-EEecCcccHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEEcccc
Q 020082 127 ALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTV 198 (331)
Q Consensus 127 ~~~~l~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~-~~~~~~~~~~~~~gi~via~~~l 198 (331)
-++.+.+|++...+. ..|=|.++...++.+++.+ .++++|+..+..-- .....+.+.|+++|+.++.++..
T Consensus 202 d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~-a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 202 NQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQER-LIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred cHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhC-CCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 466778888887665 6677778899999988755 47888887664321 12357899999999999876543
No 82
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=50.90 E-value=67 Score=29.83 Aligned_cols=82 Identities=23% Similarity=0.294 Sum_probs=54.5
Q ss_pred cEEEEecCCCCCchHHHHHHHHHHHHHcCccc-EEecCcccHHHHHHHHHcCCCeeeecccccccc-cChhhhHHHHHHH
Q 020082 110 DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVD-MRPQQKMAELCQL 187 (331)
Q Consensus 110 Dl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~-~~~~~~~~~~~~~ 187 (331)
++.++..|-+. +-++.+..+++.-.|. ..|=|.++++.+.++++.+ .++++|+..+..- -.....+...|++
T Consensus 216 ~i~~iEqP~~~-----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~-~~d~v~~k~~~~GGi~~~~~i~~~a~~ 289 (357)
T cd03316 216 DLFWFEEPVPP-----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAG-AVDIIQPDVTKVGGITEAKKIAALAEA 289 (357)
T ss_pred CCCeEcCCCCc-----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhC-CCCEEecCccccCCHHHHHHHHHHHHH
Confidence 45556655332 2456677777775554 4444567889999998865 5788888765431 1123578999999
Q ss_pred hCCeEEEccc
Q 020082 188 TGVKLITYGT 197 (331)
Q Consensus 188 ~gi~via~~~ 197 (331)
+|+.++..+.
T Consensus 290 ~g~~~~~~~~ 299 (357)
T cd03316 290 HGVRVAPHGA 299 (357)
T ss_pred cCCeEeccCC
Confidence 9999887763
No 83
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=50.66 E-value=2.2e+02 Score=26.83 Aligned_cols=100 Identities=12% Similarity=0.083 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCc-ccEEecCcccHHHHHHHHHcCCCeee
Q 020082 87 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 165 (331)
Q Consensus 87 ~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gk-ir~iGvS~~~~~~l~~~~~~~~~~~~ 165 (331)
.++.+.. ..+-+.|.++|+++|++- +|.. . ++-++.++.+.+.|+ .+.++++......++.+.+.+.+...
T Consensus 22 ~~s~e~k-~~ia~~L~~~GV~~IE~G---~p~~-~---~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~ 93 (378)
T PRK11858 22 VFTNEEK-LAIARMLDEIGVDQIEAG---FPAV-S---EDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAVH 93 (378)
T ss_pred CCCHHHH-HHHHHHHHHhCCCEEEEe---CCCc-C---hHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEEE
Confidence 3566644 445556999999999974 3322 1 223455556655554 44555555557788888886644322
Q ss_pred eccccccc------ccCh------hhhHHHHHHHhCCeEEE
Q 020082 166 NQVQHSVV------DMRP------QQKMAELCQLTGVKLIT 194 (331)
Q Consensus 166 vq~~~nl~------~~~~------~~~~~~~~~~~gi~via 194 (331)
+-+.-|-. .+.. -.+.++++++.|..+..
T Consensus 94 i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~ 134 (378)
T PRK11858 94 IFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSF 134 (378)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 22222221 1111 13578899999987654
No 84
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=50.66 E-value=1.8e+02 Score=25.86 Aligned_cols=102 Identities=13% Similarity=0.076 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCc-ccEEecCcccHHHHHHHHHcCCCeee
Q 020082 87 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 165 (331)
Q Consensus 87 ~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gk-ir~iGvS~~~~~~l~~~~~~~~~~~~ 165 (331)
.++.+...+-+ +.|.++|++.|.+-. |... ++.+++.+.+.+.++ .+..++...+.+.++.+.+.|.+...
T Consensus 18 ~~s~~~k~~i~-~~L~~~Gv~~IEvG~---P~~~----~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~ 89 (262)
T cd07948 18 FFDTEDKIEIA-KALDAFGVDYIELTS---PAAS----PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDGVD 89 (262)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEEEC---CCCC----HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCEEE
Confidence 35666555444 459999998888863 4322 334455555554444 44455667788889999887655322
Q ss_pred ecccccc------cccChh------hhHHHHHHHhCCeEEEcc
Q 020082 166 NQVQHSV------VDMRPQ------QKMAELCQLTGVKLITYG 196 (331)
Q Consensus 166 vq~~~nl------~~~~~~------~~~~~~~~~~gi~via~~ 196 (331)
+-+..|- +.+..+ .++++++++.|+.+....
T Consensus 90 i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 90 LVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 2222111 112111 356788899997765543
No 85
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=50.45 E-value=2e+02 Score=26.23 Aligned_cols=92 Identities=15% Similarity=0.172 Sum_probs=64.1
Q ss_pred HHHcCCCcccEEEEecCC--C---CCchHHHHHHHHHHHHHcCcc-cEEecCcc---cHHHHHHHHHc--CCCeeeeccc
Q 020082 101 RRRMDVPCLDMLQFHWWD--Y---SNPGYLDALNHLTDLKEEGKI-KTVALTNF---DTERLRIILEN--GIPVVSNQVQ 169 (331)
Q Consensus 101 L~rLg~d~lDl~~lH~~d--~---~~~~~~e~~~~l~~l~~~Gki-r~iGvS~~---~~~~l~~~~~~--~~~~~~vq~~ 169 (331)
.++.| .|++-+|-.. + +.+ ..|..+.|+++.+.=+| -.||=|.. +++.++++.+. |-++-.....
T Consensus 160 Vk~fg---admvTiHlIsTdPki~D~p-~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSan 235 (403)
T COG2069 160 VKKFG---ADMVTIHLISTDPKIKDTP-AKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASAN 235 (403)
T ss_pred HHHhC---CceEEEEeecCCccccCCC-HHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeeccc
Confidence 35566 6788888542 2 234 68999999999988887 46788864 57888888863 4444433333
Q ss_pred ccccccChhhhHHHHHHHhCCeEEEcccccc
Q 020082 170 HSVVDMRPQQKMAELCQLTGVKLITYGTVMG 200 (331)
Q Consensus 170 ~nl~~~~~~~~~~~~~~~~gi~via~~~l~~ 200 (331)
.++ .. +.+.+++.++|=.|.+|.++.-
T Consensus 236 ldl---Dy-~~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 236 LDL---DY-ERIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred ccc---CH-HHHHHHHHhcCceEEEeeccCh
Confidence 332 22 4789999999999999998753
No 86
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=50.35 E-value=1.1e+02 Score=26.12 Aligned_cols=102 Identities=18% Similarity=0.182 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEEec-CCCCCchHHHHHHHHHHHHHcCcccEEecCccc--HHHHHHHHHcCCCeeeec
Q 020082 91 SIVRESIDVSRRRMDVPCLDMLQFHW-WDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD--TERLRIILENGIPVVSNQ 167 (331)
Q Consensus 91 ~~i~~~~~~SL~rLg~d~lDl~~lH~-~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~--~~~l~~~~~~~~~~~~vq 167 (331)
+.....+...++..+...-.+++--. ...... ...+.+.+..+++.|- .+++.++. ...+..+.. .+++++-
T Consensus 98 ~~~~~~~~~~l~~~~~~~~~l~iei~e~~~~~~-~~~~~~~~~~l~~~G~--~l~ld~~g~~~~~~~~l~~--~~~d~iK 172 (240)
T cd01948 98 PDFLDRLLELLAETGLPPRRLVLEITESALIDD-LEEALATLRRLRALGV--RIALDDFGTGYSSLSYLKR--LPVDYLK 172 (240)
T ss_pred cHHHHHHHHHHHHcCCCHHHEEEEEecchhhCC-HHHHHHHHHHHHHCCC--eEEEeCCCCcHhhHHHHHh--CCCCEEE
Confidence 34567777888888876433433322 222222 4568899999999998 57776653 334444443 3566666
Q ss_pred ccccccccC--------hhhhHHHHHHHhCCeEEEccc
Q 020082 168 VQHSVVDMR--------PQQKMAELCQLTGVKLITYGT 197 (331)
Q Consensus 168 ~~~nl~~~~--------~~~~~~~~~~~~gi~via~~~ 197 (331)
+..+++..- .-+.++..|+..|+.+++-.+
T Consensus 173 ld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gV 210 (240)
T cd01948 173 IDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGV 210 (240)
T ss_pred ECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEec
Confidence 665544221 124688889999999987765
No 87
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=49.84 E-value=1.9e+02 Score=25.78 Aligned_cols=100 Identities=10% Similarity=0.059 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHc--CCCeeee
Q 020082 89 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--GIPVVSN 166 (331)
Q Consensus 89 ~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~--~~~~~~v 166 (331)
+.+.+.+...+. ..-|-|.||+=.- ...... .+.+...++.+++.-.+ -+-+-+++++.++++++. |.+ .+|
T Consensus 23 d~~~i~~~A~~~-~~~GAdiIDVg~~--~~~~eE-~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~-iIN 96 (261)
T PRK07535 23 DAAFIQKLALKQ-AEAGADYLDVNAG--TAVEEE-PETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPP-LIN 96 (261)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCC--CCchhH-HHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCC-EEE
Confidence 455555554443 4679999999532 111111 34455566666554222 377778999999999986 533 223
Q ss_pred cccccccccChhhhHHHHHHHhCCeEEEccc
Q 020082 167 QVQHSVVDMRPQQKMAELCQLTGVKLITYGT 197 (331)
Q Consensus 167 q~~~nl~~~~~~~~~~~~~~~~gi~via~~~ 197 (331)
-+ |..+.. ...+++.+++.|+.++...-
T Consensus 97 sI--s~~~~~-~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 97 SV--SAEGEK-LEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred eC--CCCCcc-CHHHHHHHHHhCCCEEEEec
Confidence 22 221111 24789999999999997653
No 88
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=49.82 E-value=66 Score=27.73 Aligned_cols=88 Identities=15% Similarity=0.205 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCc---ccEEecCc-ccHHHHHHHHHcCCCee
Q 020082 89 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK---IKTVALTN-FDTERLRIILENGIPVV 164 (331)
Q Consensus 89 ~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gk---ir~iGvS~-~~~~~l~~~~~~~~~~~ 164 (331)
+.+....-+ +.|-.-|...+.+=+ .++ ..++.+++++++-. =-.||..+ .++++++.+++.|-.|.
T Consensus 23 ~~~~a~~~~-~al~~~Gi~~iEit~------~~~---~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fi 92 (213)
T PRK06552 23 SKEEALKIS-LAVIKGGIKAIEVTY------TNP---FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFI 92 (213)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEEC------CCc---cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEE
Confidence 455555444 447777877666632 233 25555666655421 13689887 58999999999886554
Q ss_pred eecccccccccChhhhHHHHHHHhCCeEEE
Q 020082 165 SNQVQHSVVDMRPQQKMAELCQLTGVKLIT 194 (331)
Q Consensus 165 ~vq~~~nl~~~~~~~~~~~~~~~~gi~via 194 (331)
+ ++ ....+++++|+++||.++.
T Consensus 93 v-----sP---~~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 93 V-----SP---SFNRETAKICNLYQIPYLP 114 (213)
T ss_pred E-----CC---CCCHHHHHHHHHcCCCEEC
Confidence 3 32 3345899999999999885
No 89
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=49.76 E-value=2.1e+02 Score=26.91 Aligned_cols=88 Identities=17% Similarity=0.159 Sum_probs=54.8
Q ss_pred cEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCCeeeecccccccccC-hhhhHHHHHHHh
Q 020082 110 DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLT 188 (331)
Q Consensus 110 Dl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~~-~~~~~~~~~~~~ 188 (331)
|-+.+-.|. ...+...+..+...+.+...-+...+.+.+++++....+..++..+-|+.-.. .-+.+.+.|+++
T Consensus 91 D~Vl~~~p~-----y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~ 165 (382)
T TIGR02080 91 DLLVAPHDC-----YGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAV 165 (382)
T ss_pred CEEEEcCCC-----cHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHc
Confidence 445554443 23345555555555555544444557788888775445666666677764322 235788999999
Q ss_pred CCeEEEcccccccc
Q 020082 189 GVKLITYGTVMGGL 202 (331)
Q Consensus 189 gi~via~~~l~~G~ 202 (331)
|+-++.=..++.+.
T Consensus 166 g~~vvvD~a~~~~~ 179 (382)
T TIGR02080 166 GAVVVVDNTFLSPA 179 (382)
T ss_pred CCEEEEECCCcccc
Confidence 99998888776554
No 90
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=49.76 E-value=2.7e+02 Score=27.53 Aligned_cols=102 Identities=9% Similarity=0.106 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcC---------c-ccEEecCcccHHHHHHH
Q 020082 87 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG---------K-IKTVALTNFDTERLRII 156 (331)
Q Consensus 87 ~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~G---------k-ir~iGvS~~~~~~l~~~ 156 (331)
.++.+. +..+-+.|.++|+|+|.+-+ |... .+-+++++.+.+.+ . .+-.+++....+.++.+
T Consensus 102 ~fs~ee-Ki~Ia~~L~~~GVd~IEvG~---Pa~s----~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a 173 (503)
T PLN03228 102 SLTPPQ-KLEIARQLAKLRVDIMEVGF---PGSS----EEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAA 173 (503)
T ss_pred CCCHHH-HHHHHHHHHHcCCCEEEEeC---CCCC----HHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHH
Confidence 456664 44556669999999888844 3221 22333444444332 1 23446777777777777
Q ss_pred HHc----CCCeeee-------cccccccccChh------hhHHHHHHHhCCeEEEccc
Q 020082 157 LEN----GIPVVSN-------QVQHSVVDMRPQ------QKMAELCQLTGVKLITYGT 197 (331)
Q Consensus 157 ~~~----~~~~~~v-------q~~~nl~~~~~~------~~~~~~~~~~gi~via~~~ 197 (331)
.+. +.+-..+ ++.+++ ....+ .+.+++++++|...+.+++
T Consensus 174 ~~a~~~a~~~~V~i~i~~Sd~h~~~kl-~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~ 230 (503)
T PLN03228 174 WEALKYAKRPRILAFTSTSDIHMKYKL-KKTKEEVIEMAVSSIRYAKSLGFHDIQFGC 230 (503)
T ss_pred HHhhcccCCCEEEEEecCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCceEEecc
Confidence 764 2121111 222222 11111 3688899999876555554
No 91
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=49.55 E-value=2.5e+02 Score=27.53 Aligned_cols=105 Identities=8% Similarity=-0.026 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcC-cccEEecCc----c--cHHHHHHHHHcC
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTN----F--DTERLRIILENG 160 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~G-kir~iGvS~----~--~~~~l~~~~~~~ 160 (331)
.+++.+.+.++...++.|+.. +.+...++... -+.+.+.++.++++| .-..|++++ . +.+.+..+.+.|
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~---~~~~Dd~f~~~-~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG 297 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGF---FILADEEPTIN-RKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAG 297 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCE---EEEEecccccC-HHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhC
Confidence 378889999998888888654 34444333333 355777788888887 333555542 2 445566665555
Q ss_pred CCeeeeccc--------ccccccC----hhhhHHHHHHHhCCeEEEcccc
Q 020082 161 IPVVSNQVQ--------HSVVDMR----PQQKMAELCQLTGVKLITYGTV 198 (331)
Q Consensus 161 ~~~~~vq~~--------~nl~~~~----~~~~~~~~~~~~gi~via~~~l 198 (331)
.. .+++. ...++.. ...+.+..|+++||.+.+.-.+
T Consensus 298 ~~--~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~ 345 (497)
T TIGR02026 298 LV--HISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFIT 345 (497)
T ss_pred Cc--EEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 32 22221 1112111 1236788999999987544333
No 92
>PRK02399 hypothetical protein; Provisional
Probab=48.57 E-value=49 Score=31.49 Aligned_cols=61 Identities=21% Similarity=0.380 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEE--------------ecCcccHHHHHHHHHcC
Q 020082 95 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV--------------ALTNFDTERLRIILENG 160 (331)
Q Consensus 95 ~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~i--------------GvS~~~~~~l~~~~~~~ 160 (331)
.+++...++|.-...|.+-+|.-.... ++||+|.++|.|..+ |+-+-.++++..+.+.|
T Consensus 199 p~v~~~~~~Le~~GyEvlVFHATG~GG-------raME~Li~~G~~~gVlDlTttEv~d~l~GGv~sagp~Rl~Aa~~~g 271 (406)
T PRK02399 199 PCVQAAREELEARGYEVLVFHATGTGG-------RAMEKLIDSGLIAGVLDLTTTEVCDELFGGVLAAGPDRLEAAARTG 271 (406)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCCCch-------HHHHHHHHcCCceEEEEcchHHHHHHHhCcCccCCccHHHHHHHcC
Confidence 455666666665557999999865422 469999999998765 55555666666666655
Q ss_pred CC
Q 020082 161 IP 162 (331)
Q Consensus 161 ~~ 162 (331)
+|
T Consensus 272 IP 273 (406)
T PRK02399 272 IP 273 (406)
T ss_pred CC
Confidence 54
No 93
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=48.54 E-value=69 Score=29.95 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCccc-EEecCcccHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEEccccccc
Q 020082 127 ALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 201 (331)
Q Consensus 127 ~~~~l~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~-~~~~~~~~~~~~~gi~via~~~l~~G 201 (331)
-++.+.+|+++..|. ..|=|.++.+.+..+++.+ .++++|+.....-- .....+...|+++|+.++..+-...+
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~-~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s~ 302 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRG-AADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLESS 302 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhC-CCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchhH
Confidence 456677777776654 5566667888888888754 36677776443211 12357889999999998876544443
No 94
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=47.57 E-value=1.4e+02 Score=27.80 Aligned_cols=104 Identities=13% Similarity=0.214 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEE--------e-cCCCCCchHHHHHHHHHHHHHcCcccEEecC-cccHHHHHHH
Q 020082 87 KMTSSIVRESIDVSRRRMDVPCLDMLQF--------H-WWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRII 156 (331)
Q Consensus 87 ~~~~~~i~~~~~~SL~rLg~d~lDl~~l--------H-~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS-~~~~~~l~~~ 156 (331)
.++.+.+.+ +-+.|.+.|+|+|.+-+. + .+. ..+ -.+.++++.+....-++..+-+. ..+.+.++.+
T Consensus 20 ~f~~~~~~~-ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~-~~~-~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a 96 (333)
T TIGR03217 20 QFTIEQVRA-IAAALDEAGVDAIEVTHGDGLGGSSFNYGFS-AHT-DLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAA 96 (333)
T ss_pred cCCHHHHHH-HHHHHHHcCCCEEEEecCCCCCCccccCCCC-CCC-hHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHH
Confidence 456665554 445599999999988522 1 111 112 12333333333333333222221 1356778888
Q ss_pred HHcCCCeeeecccccccccChhhhHHHHHHHhCCeEEEc
Q 020082 157 LENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 195 (331)
Q Consensus 157 ~~~~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~ 195 (331)
.+.+++ .+.+..+.-+-..-.+.++++++.|..+...
T Consensus 97 ~~~gvd--~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 97 YDAGAR--TVRVATHCTEADVSEQHIGMARELGMDTVGF 133 (333)
T ss_pred HHCCCC--EEEEEeccchHHHHHHHHHHHHHcCCeEEEE
Confidence 776644 3443333322222357888899998766543
No 95
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=47.47 E-value=1.1e+02 Score=26.30 Aligned_cols=67 Identities=13% Similarity=0.132 Sum_probs=42.7
Q ss_pred HHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecC-cccHHHHHHHHHcCCCeeeeccccc
Q 020082 101 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHS 171 (331)
Q Consensus 101 L~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS-~~~~~~l~~~~~~~~~~~~vq~~~n 171 (331)
...+|.|++=+.+.+....... .+....+.... .+.+..+||. +-+++.+.++++. ..++++|++-+
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~V~--~~~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~-~~~d~vQLHg~ 86 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRYVS--PEQAAELAAAL-PPFVKVVGVFVNASDEEIDEIVET-VPLDLLQLHGD 86 (210)
T ss_pred HHHcCCCEEEEccCCCCCCcCC--HHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh-cCCCEEEECCC
Confidence 3458999988864332211122 23444443332 3568899988 5688888888873 47899999765
No 96
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=47.41 E-value=88 Score=26.78 Aligned_cols=91 Identities=11% Similarity=0.122 Sum_probs=58.0
Q ss_pred HHHcCCCcccEEEEe-cCCCCCch----HHHHHHHHHHHHH--cCcccEEecCcccHHHHHHHHHcCCCeeeeccccccc
Q 020082 101 RRRMDVPCLDMLQFH-WWDYSNPG----YLDALNHLTDLKE--EGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVV 173 (331)
Q Consensus 101 L~rLg~d~lDl~~lH-~~d~~~~~----~~e~~~~l~~l~~--~Gkir~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~ 173 (331)
+..-|.|+||+=--- +|...... ++.+...++.+++ .+. -+-+-++.++.++++++.|.++.-+...+..
T Consensus 28 ~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~g~~~ind~~~~~~- 104 (210)
T PF00809_consen 28 QVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKAGADIINDISGFED- 104 (210)
T ss_dssp HHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHHTSSEEEETTTTSS-
T ss_pred HHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHcCcceEEecccccc-
Confidence 445689999984211 22211111 3345666666665 333 5777789999999999877655433333332
Q ss_pred ccChhhhHHHHHHHhCCeEEEcccc
Q 020082 174 DMRPQQKMAELCQLTGVKLITYGTV 198 (331)
Q Consensus 174 ~~~~~~~~~~~~~~~gi~via~~~l 198 (331)
..++++.++++|+.++++..-
T Consensus 105 ----~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 ----DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp ----STTHHHHHHHHTSEEEEESES
T ss_pred ----cchhhhhhhcCCCEEEEEecc
Confidence 458999999999999988765
No 97
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=46.65 E-value=30 Score=26.02 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=38.1
Q ss_pred CcccHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEEccccccc
Q 020082 146 TNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 201 (331)
Q Consensus 146 S~~~~~~l~~~~~~~~~~~~vq~~~nl~~~-~~~~~~~~~~~~~gi~via~~~l~~G 201 (331)
|.++.+.++++++.+ .++++|+...-.-- .....+.+.|+++|+.++..+. .++
T Consensus 3 ~~~~~~~~~~li~~~-a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAG-AVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHTT-SCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHcC-CCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 457888899988865 47788877543211 1235789999999999999996 544
No 98
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=46.36 E-value=1.3e+02 Score=28.70 Aligned_cols=71 Identities=8% Similarity=0.040 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcCccc-EEecCcccHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEEcccc
Q 020082 127 ALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTV 198 (331)
Q Consensus 127 ~~~~l~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~-~~~~~~~~~~~~~gi~via~~~l 198 (331)
-++.+.+|++.-.|. ..|=|.++...++.+++.+ -++++|+...-.-- .....+.+.|+.+|+.++.++..
T Consensus 245 d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~-a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 245 NQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQ-LIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred CHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcC-CCCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 467788888876665 6667778899999998865 47888876664311 12357899999999999987553
No 99
>PLN02363 phosphoribosylanthranilate isomerase
Probab=46.16 E-value=61 Score=28.86 Aligned_cols=75 Identities=12% Similarity=0.135 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecC-cccHHHHHHHHHcCCCeeeec
Q 020082 89 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQ 167 (331)
Q Consensus 89 ~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS-~~~~~~l~~~~~~~~~~~~vq 167 (331)
+++.++... ++|.|++=+.+......... .+....+.+......++.+||. +-+++.+.++++. .+++++|
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~SpR~Vs--~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~-~~ld~VQ 127 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPKSKRSIS--LSVAKEISQVAREGGAKPVGVFVDDDANTILRAADS-SDLELVQ 127 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCCCCCcCC--HHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHh-cCCCEEE
Confidence 455555544 58999998864432211122 2444444444433346789986 7788888888773 4789999
Q ss_pred cccc
Q 020082 168 VQHS 171 (331)
Q Consensus 168 ~~~n 171 (331)
++-+
T Consensus 128 LHG~ 131 (256)
T PLN02363 128 LHGN 131 (256)
T ss_pred ECCC
Confidence 9764
No 100
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=45.66 E-value=2.5e+02 Score=25.89 Aligned_cols=75 Identities=9% Similarity=0.096 Sum_probs=44.0
Q ss_pred HHHHHHHHHHcCcccEEecCc----ccHH-----HHHHHHHcCCCeeeeccccccccc--ChhhhHHHHHHHhCCeEEEc
Q 020082 127 ALNHLTDLKEEGKIKTVALTN----FDTE-----RLRIILENGIPVVSNQVQHSVVDM--RPQQKMAELCQLTGVKLITY 195 (331)
Q Consensus 127 ~~~~l~~l~~~Gkir~iGvS~----~~~~-----~l~~~~~~~~~~~~vq~~~nl~~~--~~~~~~~~~~~~~gi~via~ 195 (331)
+.+.++.+..-..++.+|+.+ ..+. .++.+.+.+.+ .++++.+|=... ....+.++.+++.|+.+...
T Consensus 161 L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~-~~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~q 239 (321)
T TIGR03821 161 LDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQ-TVLVVHINHANEIDAEVADALAKLRNAGITLLNQ 239 (321)
T ss_pred HHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCc-EEEEeeCCChHhCcHHHHHHHHHHHHcCCEEEec
Confidence 555566666667777777653 3333 23333333422 223445553211 11246788889999999999
Q ss_pred ccccccc
Q 020082 196 GTVMGGL 202 (331)
Q Consensus 196 ~~l~~G~ 202 (331)
.++..|+
T Consensus 240 tvllkgi 246 (321)
T TIGR03821 240 SVLLRGV 246 (321)
T ss_pred ceeeCCC
Confidence 9998774
No 101
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=45.15 E-value=58 Score=31.01 Aligned_cols=71 Identities=23% Similarity=0.346 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEE--------------ecCcccHHHHHHHHHcC
Q 020082 95 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV--------------ALTNFDTERLRIILENG 160 (331)
Q Consensus 95 ~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~i--------------GvS~~~~~~l~~~~~~~ 160 (331)
.+++...++|.-.-.+.+-+|.-.... .+||+|.++|.+..+ |+..-.++++..+.+.|
T Consensus 198 p~V~~~~~~Le~~G~Ev~VFHAtG~GG-------~aME~Li~~G~~~~VlDlTttEl~d~l~GGv~sagp~Rl~AA~~~G 270 (403)
T PF06792_consen 198 PCVDAIRERLEEEGYEVLVFHATGTGG-------RAMERLIREGQFDGVLDLTTTELADELFGGVLSAGPDRLEAAARAG 270 (403)
T ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCch-------HHHHHHHHcCCcEEEEECcHHHHHHHHhCCCCCCCchHHHHHHHcC
Confidence 445555556655558899999865322 469999999998776 66666677777777666
Q ss_pred CCeeeecccccc
Q 020082 161 IPVVSNQVQHSV 172 (331)
Q Consensus 161 ~~~~~vq~~~nl 172 (331)
+|-.+.=.-..+
T Consensus 271 IP~Vvs~GalDm 282 (403)
T PF06792_consen 271 IPQVVSPGALDM 282 (403)
T ss_pred CCEEEecCccce
Confidence 654433333333
No 102
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=45.03 E-value=2.4e+02 Score=25.53 Aligned_cols=106 Identities=16% Similarity=0.177 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCCeeeec
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQ 167 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~vq 167 (331)
++.+. +..+-+.|.++|+++|++-.++.|... |...+.++.+..+.+...++...+. .+...++++.+.+.+...+-
T Consensus 23 ~s~e~-k~~ia~~L~~~Gv~~IEvgsf~~p~~~-p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g~~~v~i~ 99 (287)
T PRK05692 23 IPTAD-KIALIDRLSAAGLSYIEVASFVSPKWV-PQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAGADEVAVF 99 (287)
T ss_pred cCHHH-HHHHHHHHHHcCCCEEEeCCCcCcccc-cccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcCCCEEEEE
Confidence 45554 445566699999999999755555321 1122335555555544446666655 47888888888664432222
Q ss_pred cccccc------ccCh------hhhHHHHHHHhCCeEEEcc
Q 020082 168 VQHSVV------DMRP------QQKMAELCQLTGVKLITYG 196 (331)
Q Consensus 168 ~~~nl~------~~~~------~~~~~~~~~~~gi~via~~ 196 (331)
+..|-. .+.. -...+++++++|+.+.+.-
T Consensus 100 ~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i 140 (287)
T PRK05692 100 ASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYV 140 (287)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 222211 1111 1368999999999876433
No 103
>PRK06361 hypothetical protein; Provisional
Probab=44.97 E-value=1.9e+02 Score=24.45 Aligned_cols=124 Identities=13% Similarity=0.148 Sum_probs=71.8
Q ss_pred HHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcc-cHHHHHHHHHcCCCeeeeccccccccc
Q 020082 97 IDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF-DTERLRIILENGIPVVSNQVQHSVVDM 175 (331)
Q Consensus 97 ~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~-~~~~l~~~~~~~~~~~~vq~~~nl~~~ 175 (331)
+...+.+++ +|+..+|......+ .. ...-.++.+.|.+.-+|=-.. ..+.++.+.+.+..+.++-. .+ ..
T Consensus 77 ~~~~~~~~~---~~~~svH~~~~~~~-~~--~~~~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~~lEin~~-~~--~~ 147 (212)
T PRK06361 77 LAKKARDLG---AEIVVVHGETIVEP-VE--EGTNLAAIECEDVDILAHPGLITEEEAELAAENGVFLEITAR-KG--HS 147 (212)
T ss_pred HHHHHHHCC---CEEEEECCCCcchh-hh--hhhHHHHHhCCCCcEecCcchhhHHHHHHHHHcCeEEEEECC-CC--cc
Confidence 335555665 66678996543222 11 111255778898877775543 34445555555654554421 11 12
Q ss_pred ChhhhHHHHHHHhCCeEEEccccccccccccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHH
Q 020082 176 RPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASK 255 (331)
Q Consensus 176 ~~~~~~~~~~~~~gi~via~~~l~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~ 255 (331)
.....+++.+++.|+.++.-+.-.. + +... ..+.+..++.+
T Consensus 148 ~~~~~~l~~a~~~gi~vv~~SDaH~-----------------------~---------------~d~~-~~~~~~~i~~~ 188 (212)
T PRK06361 148 LTNGHVARIAREAGAPLVINTDTHA-----------------------P---------------SDLI-TYEFARKVALG 188 (212)
T ss_pred cchHHHHHHHHHhCCcEEEECCCCC-----------------------H---------------HHHH-HHHHHHHHHcC
Confidence 3345799999999999876654321 0 1111 24778888999
Q ss_pred cCCCHHHHHHHHH
Q 020082 256 HGVSIPVVAVRYI 268 (331)
Q Consensus 256 ~g~s~aq~Al~~~ 268 (331)
.|++..++--.+.
T Consensus 189 ~gl~~~~v~~~~~ 201 (212)
T PRK06361 189 AGLTEKELEEALE 201 (212)
T ss_pred CCCCHHHHHHHHH
Confidence 9998888654443
No 104
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=44.84 E-value=1.1e+02 Score=29.27 Aligned_cols=82 Identities=13% Similarity=0.152 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHc-CCCeeeecccccccccChh-hhHHHHHHHhCCeEEEccccccc
Q 020082 124 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQ-QKMAELCQLTGVKLITYGTVMGG 201 (331)
Q Consensus 124 ~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~-~~~~~~vq~~~nl~~~~~~-~~~~~~~~~~gi~via~~~l~~G 201 (331)
+..+...++.+.++.-|....+-..+.+.+.+++.. ..+..++..+=|++..-.+ ..+.+.|+++|+-++.=++++.+
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP 191 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP 191 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc
Confidence 456788888888888887777777777676666653 5688899999999866554 57888999999999999999988
Q ss_pred cccc
Q 020082 202 LLSE 205 (331)
Q Consensus 202 ~L~g 205 (331)
.+..
T Consensus 192 ~~q~ 195 (396)
T COG0626 192 VLQR 195 (396)
T ss_pred cccC
Confidence 7754
No 105
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=44.82 E-value=88 Score=26.46 Aligned_cols=102 Identities=9% Similarity=-0.054 Sum_probs=51.8
Q ss_pred HHHHHHHHhhhcCCccEEECCC-CchHHHHHHHHhhhhcCCCccchheeeecccccCCCCCCCHHHHHHHHHHHHHHcCC
Q 020082 28 SLRRCRSHHLRHGRSLSFDFVD-GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDV 106 (331)
Q Consensus 28 ~l~~al~~~~~~GGin~~DTA~-g~sE~~lG~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~SL~rLg~ 106 (331)
.++.+++.|.+.-|..+.+.++ ..+.+...+..+..+.. +..+.+.. + .+.+.+.+- ...++
T Consensus 11 d~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~-----~~~V~v~v---n----~~~~~i~~i----a~~~~- 73 (203)
T cd00405 11 DALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPPF-----VKRVGVFV---N----EDLEEILEI----AEELG- 73 (203)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCCC-----CcEEEEEe---C----CCHHHHHHH----HHhcC-
Confidence 4556666655543444445444 45555555544433321 00112211 1 134444333 23344
Q ss_pred CcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHH
Q 020082 107 PCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERL 153 (331)
Q Consensus 107 d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l 153 (331)
+|.++||..++ .+.+..+.+......++.+|++.+...++
T Consensus 74 --~d~Vqlhg~e~-----~~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 74 --LDVVQLHGDES-----PEYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred --CCEEEECCCCC-----HHHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 78999998652 12334444433456788999998766554
No 106
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=44.33 E-value=77 Score=29.68 Aligned_cols=75 Identities=11% Similarity=0.068 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcCccc-EEecCcccHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEEcccccccc
Q 020082 127 ALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGGL 202 (331)
Q Consensus 127 ~~~~l~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~-~~~~~~~~~~~~~gi~via~~~l~~G~ 202 (331)
-++.+.+|++...+. ..|=|.++..++.++++.+ .++++|+..+..-- .....+...|+.+|+.++..+.+.+++
T Consensus 226 d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~-~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~i 302 (368)
T TIGR02534 226 NREALARLTRRFNVPIMADESVTGPADALAIAKAS-AADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGPI 302 (368)
T ss_pred cHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhC-CCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhHH
Confidence 356667777776554 6677778888888888754 47778876554311 122478899999999998775554443
No 107
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=44.01 E-value=2.8e+02 Score=27.97 Aligned_cols=117 Identities=12% Similarity=0.081 Sum_probs=66.4
Q ss_pred CCCCCchhhHHHHHHHHHHHhhhcCC--ccEE-ECCC-----CchH----------HHHHHHHhhhhcCCCccchheeee
Q 020082 16 PYRPGRRRRCHASLRRCRSHHLRHGR--SLSF-DFVD-----GPAE----------DLYGIFINRVRRERPPEFLDKVRG 77 (331)
Q Consensus 16 ~~~~~~~~~~~~~l~~al~~~~~~GG--in~~-DTA~-----g~sE----------~~lG~~l~~~~~~~~~~~~~~~~~ 77 (331)
.|+..+..+--++-..++++|.-+|| |... ++.. |.|+ +.++.+|++.-.+.. ++++
T Consensus 268 g~g~~~~~elg~vA~~~L~lAlgRGGDQVvIke~~~k~~fyGG~s~~~ekrTRvRaRvis~al~d~i~e~d-----~VfI 342 (655)
T COG3887 268 GYGENNLIELGEVAQSNLDLALGRGGDQVVIKENNGKVRFYGGKSNPMEKRTRVRARVISTALSDIIKESD-----NVFI 342 (655)
T ss_pred ccCcccHHHHHHHHHHhHHHHhccCCceEEEEcCCCceeeeCCCcchhHHhHHHHHHHHHHHHHHHHhhcC-----cEEE
Confidence 34555666777778888888888876 4445 3332 5555 566777776544322 3444
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEe
Q 020082 78 LTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVA 144 (331)
Q Consensus 78 ~~k~~~~~~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iG 144 (331)
..-..| +-+.+=.++.-..=.-..+. |.|-+-.|+...|+++.+++.+++- ++|+-+.|-
T Consensus 343 mGHk~p-----DmDalGsAig~~~~A~~~~~-~a~~v~dp~~~~pdveRai~~i~~~-~e~~~~fit 402 (655)
T COG3887 343 MGHKFP-----DMDALGSAIGMQKFASMNNK-EAFAVLDPEDMSPDVERAINEIEKN-SEGKTRFIT 402 (655)
T ss_pred EccCCC-----ChHHHHHHHHHHHHHHhccc-ccEEEECccccChhHHHHHHHHHhc-chhhheecc
Confidence 321112 34555555533222222222 7777778877777666666666654 477776653
No 108
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=43.84 E-value=1.9e+02 Score=25.13 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=37.4
Q ss_pred ccHHHHHHHHH-cCCCeeeec-c-cccccccCh---hhhHHHHHHHhCCeEEEcccccccc
Q 020082 148 FDTERLRIILE-NGIPVVSNQ-V-QHSVVDMRP---QQKMAELCQLTGVKLITYGTVMGGL 202 (331)
Q Consensus 148 ~~~~~l~~~~~-~~~~~~~vq-~-~~nl~~~~~---~~~~~~~~~~~gi~via~~~l~~G~ 202 (331)
.++.+++.+.+ .|+.+..+. + +||.++..- .+++.++++.-|-.-..+.|+..|-
T Consensus 49 ~p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s 109 (272)
T COG4130 49 TPAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGS 109 (272)
T ss_pred CCHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCC
Confidence 46677777765 465443332 2 466654321 2579999999999999999998763
No 109
>TIGR00035 asp_race aspartate racemase.
Probab=43.30 E-value=1.7e+02 Score=25.36 Aligned_cols=64 Identities=9% Similarity=0.107 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEEecCCCCC-----------chHHHHHHHHHHHHHcCcccEEecCcccHHHH
Q 020082 89 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-----------PGYLDALNHLTDLKEEGKIKTVALTNFDTERL 153 (331)
Q Consensus 89 ~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~-----------~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l 153 (331)
+.+.+++=++..-.+.+.++++++.+++|+... .....+.+.++.|.+.| +..|-++..+...+
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~ 89 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHKF 89 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHHH
Confidence 566677777788888999999999999985321 11345667777777654 79999988777653
No 110
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=43.15 E-value=83 Score=29.80 Aligned_cols=75 Identities=20% Similarity=0.321 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcC-cccEEecCc---ccHHHHHHHHHcCCCeeeec---ccccccccChhhhHHHHHHHhCCeEEEcccc
Q 020082 126 DALNHLTDLKEEG-KIKTVALTN---FDTERLRIILENGIPVVSNQ---VQHSVVDMRPQQKMAELCQLTGVKLITYGTV 198 (331)
Q Consensus 126 e~~~~l~~l~~~G-kir~iGvS~---~~~~~l~~~~~~~~~~~~vq---~~~nl~~~~~~~~~~~~~~~~gi~via~~~l 198 (331)
.+++.+..|..+| .|.|+.|-. .+++++++++......++++ ++...+ .+-.++-+.|+++|+.+..-.+.
T Consensus 103 aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~I--QpI~ei~~i~k~~~i~fHvDAvQ 180 (386)
T COG1104 103 AVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTI--QPIAEIGEICKERGILFHVDAVQ 180 (386)
T ss_pred HHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeec--ccHHHHHHHHHHcCCeEEEehhh
Confidence 4566666665556 566666664 34566666654332222222 222222 12245666666666666555554
Q ss_pred cccc
Q 020082 199 MGGL 202 (331)
Q Consensus 199 ~~G~ 202 (331)
+-|.
T Consensus 181 a~Gk 184 (386)
T COG1104 181 AVGK 184 (386)
T ss_pred hcCc
Confidence 4443
No 111
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=42.73 E-value=1.5e+02 Score=27.61 Aligned_cols=69 Identities=19% Similarity=0.211 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCccc-EEecCcccHHHHHHHHHcCCCeeeecccccccc-cChhhhHHHHHHHhCCeEEEcc
Q 020082 127 ALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVD-MRPQQKMAELCQLTGVKLITYG 196 (331)
Q Consensus 127 ~~~~l~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~-~~~~~~~~~~~~~~gi~via~~ 196 (331)
-++.+.+|+++.-|. ..|=|.++...+..+++.+ -++++|......- -.....+.+.|+++|+.++..+
T Consensus 215 d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~-~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 215 NVEALAEIAARTTIPIATGERLFSRWDFKELLEDG-AVDIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhC-CCCEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 467788888776554 5556668888988888754 4778887755431 1223579999999999998665
No 112
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=42.62 E-value=2.2e+02 Score=27.55 Aligned_cols=103 Identities=18% Similarity=0.306 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCc-ccHHHHHHHH----HcCCC
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIIL----ENGIP 162 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~-~~~~~l~~~~----~~~~~ 162 (331)
.+.+.+++.++..+ .|+.++|++|.+.-.. .++ |.+.+++|++.--. +. ...+....+. +.|.
T Consensus 227 qT~e~~~~~l~~~~-~l~~~~is~y~L~~~p-gT~--------l~~~~~~g~l~~~~-~~~~~~~my~~~~~~L~~~Gy- 294 (449)
T PRK09058 227 QTPEIWQQDLAIVR-DLGLDGVDLYALNLLP-GTP--------LAKAVEKGKLPPPA-TPAERADMYAYGVEFLAKAGW- 294 (449)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccccCC-CCH--------HHHHHHcCCCCCCC-CHHHHHHHHHHHHHHHHHCCC-
Confidence 46777777777654 4788888887664321 122 22345556543100 00 0011111111 2232
Q ss_pred eeeecccccccccCh-hhhHHHHHHHhCCeEEEccccccccccc
Q 020082 163 VVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGGLLSE 205 (331)
Q Consensus 163 ~~~vq~~~nl~~~~~-~~~~~~~~~~~gi~via~~~l~~G~L~g 205 (331)
.|...+-+.+.. +.......-..+..+++.++=|+|.+.|
T Consensus 295 ---~~yeis~far~~~~~~~~n~~~~~~~~~lg~G~gA~s~~~~ 335 (449)
T PRK09058 295 ---RQLSNSHWARTTRERNLYNLLIKQGAECLPFGAGAGGSIGG 335 (449)
T ss_pred ---eEEeeeeeecCCccccHHHHHHcCCCCEEEEccCcccccCC
Confidence 333333333321 1223334445578899888888887654
No 113
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=42.43 E-value=22 Score=22.75 Aligned_cols=22 Identities=9% Similarity=-0.085 Sum_probs=14.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHH
Q 020082 247 QTLKRIASKHGVSIPVVAVRYI 268 (331)
Q Consensus 247 ~~l~~ia~~~g~s~aq~Al~~~ 268 (331)
+.++.+..+.|++..++|-+--
T Consensus 5 ~~l~~~r~~~gltq~~lA~~~g 26 (58)
T TIGR03070 5 MLVRARRKALGLTQADLADLAG 26 (58)
T ss_pred HHHHHHHHHcCCCHHHHHHHhC
Confidence 5566666777888777775543
No 114
>PRK15108 biotin synthase; Provisional
Probab=41.96 E-value=2.9e+02 Score=25.68 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCc--ccHHHHHHHHHcCCCee-
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN--FDTERLRIILENGIPVV- 164 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~--~~~~~l~~~~~~~~~~~- 164 (331)
.+++.|.+.+.. .+.+|...+-+ ...+.++....++.+.+.++.+++.|. .+.+|+ .+.+.+.++.+.|..-.
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i~i-~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeAGld~~n 151 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRFCM-GAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANAGLDYYN 151 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEEE-EecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 688889888875 56789888733 333223322225667777888887764 344554 67888988887664321
Q ss_pred ----eeccccccccc--Chh--hhHHHHHHHhCCeEEEccccccc
Q 020082 165 ----SNQVQHSVVDM--RPQ--QKMAELCQLTGVKLITYGTVMGG 201 (331)
Q Consensus 165 ----~vq~~~nl~~~--~~~--~~~~~~~~~~gi~via~~~l~~G 201 (331)
+..-.|.-+.. ..+ -+.++.+++.|+.+-+...++-|
T Consensus 152 ~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Glg 196 (345)
T PRK15108 152 HNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLG 196 (345)
T ss_pred eccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCC
Confidence 11111211111 111 25788888889866555455433
No 115
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=41.64 E-value=3.1e+02 Score=25.91 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=30.8
Q ss_pred HHHHHHHHcCcccEEecCcccHHHHHHHHHcCCC
Q 020082 129 NHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 162 (331)
Q Consensus 129 ~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~ 162 (331)
+.++.|+++|.+-.+|-|+-+.++++++.+.|..
T Consensus 179 ~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~Ga~ 212 (382)
T PRK11170 179 EVIRKLVEAGIVVSAGHSNATYEEAKAGFRAGIT 212 (382)
T ss_pred HHHHHHHHCCcEEEeeCCcCCHHHHHHHHHcCCC
Confidence 7889999999999999999999999999986643
No 116
>PRK14017 galactonate dehydratase; Provisional
Probab=41.58 E-value=1.6e+02 Score=27.78 Aligned_cols=69 Identities=19% Similarity=0.152 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCccc-EEecCcccHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEEccc
Q 020082 128 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGT 197 (331)
Q Consensus 128 ~~~l~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~-~~~~~~~~~~~~~gi~via~~~ 197 (331)
++.+.+|++...+. ..|=|.++...+..+++.+ -++++|+..+.+-- ..-..+.+.|+.+||.++..+.
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~-a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAG-GVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcC-CCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 56678888877665 5566678889999988865 47778877664311 1235799999999999998765
No 117
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=41.17 E-value=1.3e+02 Score=28.57 Aligned_cols=70 Identities=11% Similarity=0.139 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCccc-EEecCcccHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEEcccc
Q 020082 128 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTV 198 (331)
Q Consensus 128 ~~~l~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~-~~~~~~~~~~~~~gi~via~~~l 198 (331)
++.|.+|++...+- ..|=|.++.+++..+++.+ -++++|......-- .....+...|+.+||.++.++..
T Consensus 250 ~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~-avdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 250 REGMAEFRRATGLPLATNMIVTDFRQLGHAIQLN-AVDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcC-CCcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 56677777776664 5666677888888888865 47778877654311 12357899999999999988764
No 118
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=40.93 E-value=96 Score=29.42 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCCeeeecccccccccChh-hhHHHHHHHhC-CeEEEccccccc
Q 020082 124 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQ-QKMAELCQLTG-VKLITYGTVMGG 201 (331)
Q Consensus 124 ~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~~~~-~~~~~~~~~~g-i~via~~~l~~G 201 (331)
...+...++++....-|...=+...+.+.++++++...+..++..+-|+.-.-.+ ..+.+.|+++| +.++.=++++.+
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 3567777777555555554444455778888888755678888888888754433 57889999998 999999999887
Q ss_pred cccc
Q 020082 202 LLSE 205 (331)
Q Consensus 202 ~L~g 205 (331)
.+..
T Consensus 184 ~~~~ 187 (386)
T PF01053_consen 184 YNQN 187 (386)
T ss_dssp TTC-
T ss_pred eeec
Confidence 6653
No 119
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=40.84 E-value=2e+02 Score=27.53 Aligned_cols=86 Identities=12% Similarity=0.067 Sum_probs=57.7
Q ss_pred cEEEEecCCCCCchHHHHHHHHHHHHHc------CcccEEecCcccHHHHHHHHHcCCCeeeeccccccccc-ChhhhHH
Q 020082 110 DMLQFHWWDYSNPGYLDALNHLTDLKEE------GKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMA 182 (331)
Q Consensus 110 Dl~~lH~~d~~~~~~~e~~~~l~~l~~~------Gkir~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~-~~~~~~~ 182 (331)
++ ++-.|-+... -++.++.|.+|++. ..--..+=|.++.+.+.++++.+ -.+++|+..+-.-- .....+.
T Consensus 265 ~~-~iEqPv~~~d-~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~-a~d~v~iK~~k~GGIt~a~kia 341 (408)
T TIGR01502 265 HL-RIEGPMDVGS-RQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAK-AGHMVQIKTPDVGGVNNIARAI 341 (408)
T ss_pred Ce-EEecCCCCCc-chhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhC-CCCEEEeCccccCCHHHHHHHH
Confidence 44 6666643222 13456777777765 33345566678899999998865 47888887764311 1235799
Q ss_pred HHHHHhCCeEEEcccc
Q 020082 183 ELCQLTGVKLITYGTV 198 (331)
Q Consensus 183 ~~~~~~gi~via~~~l 198 (331)
++|+.+||.++..+..
T Consensus 342 ~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 342 MYCKANGMGAYVGGTC 357 (408)
T ss_pred HHHHHcCCEEEEeCCC
Confidence 9999999999987665
No 120
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=40.46 E-value=2.9e+02 Score=25.80 Aligned_cols=90 Identities=17% Similarity=0.166 Sum_probs=59.6
Q ss_pred EEEecCCCCC----------chHHHHHHHHHHHHHcCcccEEecC-------cccHHHHHHHHH--cCCCeeeecccccc
Q 020082 112 LQFHWWDYSN----------PGYLDALNHLTDLKEEGKIKTVALT-------NFDTERLRIILE--NGIPVVSNQVQHSV 172 (331)
Q Consensus 112 ~~lH~~d~~~----------~~~~e~~~~l~~l~~~Gkir~iGvS-------~~~~~~l~~~~~--~~~~~~~vq~~~nl 172 (331)
+.||.|+... ..+++.+++.+...+... +.|-+- |-+.+...++++ .+++..++-++||+
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np 294 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNP 294 (349)
T ss_pred EecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCC
Confidence 6789885321 126788888888776555 444322 445666666665 26777999999999
Q ss_pred cccCh-----h---hhHHHHHHHhCCeEEEcccccccc
Q 020082 173 VDMRP-----Q---QKMAELCQLTGVKLITYGTVMGGL 202 (331)
Q Consensus 173 ~~~~~-----~---~~~~~~~~~~gi~via~~~l~~G~ 202 (331)
..... . ....+..+++||.+....+-+..+
T Consensus 295 ~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~DI 332 (349)
T COG0820 295 VPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGDDI 332 (349)
T ss_pred CCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccccc
Confidence 85322 1 246666778899999888765443
No 121
>PRK12928 lipoyl synthase; Provisional
Probab=40.46 E-value=2.8e+02 Score=25.10 Aligned_cols=108 Identities=9% Similarity=0.115 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEec-C-cc---cHHHHHHHHHcC
Q 020082 86 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVAL-T-NF---DTERLRIILENG 160 (331)
Q Consensus 86 ~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGv-S-~~---~~~~l~~~~~~~ 160 (331)
...+++.+.+.++ .++.+|..++-|.-.+..|..+...+...+.++.+++..---.|.+ + .+ ..+.+..+.+.+
T Consensus 85 ~~~~~eei~~~a~-~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~Ag 163 (290)
T PRK12928 85 MPLDPDEPERVAE-AVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAAK 163 (290)
T ss_pred CCCCHHHHHHHHH-HHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHcC
Confidence 3468899998887 5888999998888877644322113344555566666532113332 2 22 345677777655
Q ss_pred CCeee-----ecccccccccCh----hhhHHHHHHHhC--CeEEE
Q 020082 161 IPVVS-----NQVQHSVVDMRP----QQKMAELCQLTG--VKLIT 194 (331)
Q Consensus 161 ~~~~~-----vq~~~nl~~~~~----~~~~~~~~~~~g--i~via 194 (331)
..+.. +.--+..+.+.. -.+++..+++.| +.+-+
T Consensus 164 ~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s 208 (290)
T PRK12928 164 PDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKS 208 (290)
T ss_pred chhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecc
Confidence 22110 011112222211 136788899888 55443
No 122
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=40.34 E-value=2.4e+02 Score=24.31 Aligned_cols=98 Identities=12% Similarity=0.128 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHH----cCCCe
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE----NGIPV 163 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~----~~~~~ 163 (331)
++.+.. ..+-+.|.++|.++|++- .|-.. +...+.++.+.+.... .+-.+++......++.+.+ .+.+.
T Consensus 11 ~~~~~k-~~i~~~L~~~Gv~~iEvg---~~~~~-~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 11 FSTEEK-LEIAKALDEAGVDYIEVG---FPFAS-EDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp --HHHH-HHHHHHHHHHTTSEEEEE---HCTSS-HHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSE
T ss_pred cCHHHH-HHHHHHHHHhCCCEEEEc---ccccC-HHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCE
Confidence 455544 445556999999999887 33222 2134555666666666 4445556566666666443 45444
Q ss_pred eeecccccccc------cC------hhhhHHHHHHHhCCeE
Q 020082 164 VSNQVQHSVVD------MR------PQQKMAELCQLTGVKL 192 (331)
Q Consensus 164 ~~vq~~~nl~~------~~------~~~~~~~~~~~~gi~v 192 (331)
..+-...|-.. .. .-..++.++++.|..+
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 33333344311 11 1136789999999988
No 123
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=40.28 E-value=2.6e+02 Score=24.63 Aligned_cols=103 Identities=11% Similarity=0.075 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCccc-EEecCcccHHHHHHHHHcCCCeeee
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSN 166 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~v 166 (331)
++.+...+-++ .|+.+ ++.++..|-+. +-++.+.++++.-.|. ..|=+.++...+.++++.+ .++++
T Consensus 140 ~~~~~a~~~~~-~l~~~-----~i~~iEeP~~~-----~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~-~~d~v 207 (265)
T cd03315 140 WTPKQAIRALR-ALEDL-----GLDYVEQPLPA-----DDLEGRAALARATDTPIMADESAFTPHDAFRELALG-AADAV 207 (265)
T ss_pred cCHHHHHHHHH-HHHhc-----CCCEEECCCCc-----ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhC-CCCEE
Confidence 45554444433 34444 44555666432 2346667777776554 4444567889998888754 57888
Q ss_pred ccccccccc-ChhhhHHHHHHHhCCeEEEcccccccc
Q 020082 167 QVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGGL 202 (331)
Q Consensus 167 q~~~nl~~~-~~~~~~~~~~~~~gi~via~~~l~~G~ 202 (331)
|+..+..-. .....+...|+++|+.++..+.+.+++
T Consensus 208 ~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~i 244 (265)
T cd03315 208 NIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESGL 244 (265)
T ss_pred EEecccccCHHHHHHHHHHHHHcCCcEEecCccchHH
Confidence 887665421 223578999999999999887665543
No 124
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=40.04 E-value=2.3e+02 Score=24.03 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHhCCCceeEeecccCCcHhHHHHhhchh
Q 020082 258 VSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF 296 (331)
Q Consensus 258 ~s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~~~a~ 296 (331)
-|-.++||+|++.++.-...|.|+.-...+|.-.|+..+
T Consensus 72 ~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~L 110 (203)
T TIGR01378 72 TTDLELALKYALERGADEITILGATGGRLDHTLANLNLL 110 (203)
T ss_pred CCHHHHHHHHHHHCCCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 466789999999887666778887765578887777665
No 125
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=39.77 E-value=1.9e+02 Score=27.19 Aligned_cols=89 Identities=16% Similarity=0.128 Sum_probs=51.9
Q ss_pred cEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCCeeeecccccccccC-hhhhHHHHHHHh
Q 020082 110 DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLT 188 (331)
Q Consensus 110 Dl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~~-~~~~~~~~~~~~ 188 (331)
|-+.+..+.+ ..+...+..+...-.++..-+...+++.++++++...+..++..+.|+.-.- +-+.+.+.|+++
T Consensus 86 d~Vl~~~~~y-----~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~ 160 (378)
T TIGR01329 86 DEIIAGDDLY-----GGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQ 160 (378)
T ss_pred CEEEEcCCCc-----hHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHc
Confidence 5555544432 2333444443333233344444446777877765445666777777764322 235788999999
Q ss_pred CCeEEEccccccccc
Q 020082 189 GVKLITYGTVMGGLL 203 (331)
Q Consensus 189 gi~via~~~l~~G~L 203 (331)
|+-++.=+.++.+..
T Consensus 161 g~~vivD~a~~~~~~ 175 (378)
T TIGR01329 161 NALVVVDNTMMSPLL 175 (378)
T ss_pred CCEEEEECCCccccc
Confidence 999988877665543
No 126
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=39.67 E-value=1.8e+02 Score=25.61 Aligned_cols=20 Identities=0% Similarity=0.003 Sum_probs=16.4
Q ss_pred hhHHHHHHHhCCeEEEcccc
Q 020082 179 QKMAELCQLTGVKLITYGTV 198 (331)
Q Consensus 179 ~~~~~~~~~~gi~via~~~l 198 (331)
+..++.|+..|...+...|.
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~ 112 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAA 112 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCC
Confidence 36789999999999877764
No 127
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=39.05 E-value=1.8e+02 Score=27.12 Aligned_cols=64 Identities=11% Similarity=0.131 Sum_probs=42.9
Q ss_pred ccEEecCcccHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEEccccccccc
Q 020082 140 IKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGGLL 203 (331)
Q Consensus 140 ir~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~-~~~~~~~~~~~~~gi~via~~~l~~G~L 203 (331)
++..-+...+++.+++++....+..++..+.|+.-. ..-+++.+.|+++|+.++.=.+++.+++
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~ 180 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVL 180 (366)
T ss_pred ceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccc
Confidence 444444445677787776544556666677787422 2235789999999999998888765544
No 128
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=38.93 E-value=3.4e+02 Score=25.65 Aligned_cols=90 Identities=11% Similarity=0.078 Sum_probs=54.9
Q ss_pred ccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHH
Q 020082 109 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQL 187 (331)
Q Consensus 109 lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~-~~~~~~~~~~~~ 187 (331)
=|.+.+..+. ...+...+..+...+.+...-+...+.+.+++++....+..++..+-|+.-. ..-+.+.+.|++
T Consensus 92 Gd~Il~~~~~-----y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~ 166 (388)
T PRK08861 92 DDLIVAPHDC-----YGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKA 166 (388)
T ss_pred CCEEEEcCCc-----hHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHH
Confidence 4555554433 2334444444433443444444445677787776544566666667776422 223578999999
Q ss_pred hCCeEEEccccccccc
Q 020082 188 TGVKLITYGTVMGGLL 203 (331)
Q Consensus 188 ~gi~via~~~l~~G~L 203 (331)
+|+-++.=..++.|.+
T Consensus 167 ~gi~vIvDea~~~~~~ 182 (388)
T PRK08861 167 VGALVAVDNTFLTPVL 182 (388)
T ss_pred cCCEEEEECCcccccc
Confidence 9999998888877654
No 129
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=38.90 E-value=1.8e+02 Score=26.03 Aligned_cols=100 Identities=10% Similarity=-0.001 Sum_probs=56.4
Q ss_pred ceeeeccccCCCCCC--chh-hHHHHHHHHHHHhhhcCCccEEECCC-------CchHHHHHHHHhhhhcCCCccchhee
Q 020082 6 RDVADEWRVGPYRPG--RRR-RCHASLRRCRSHHLRHGRSLSFDFVD-------GPAEDLYGIFINRVRRERPPEFLDKV 75 (331)
Q Consensus 6 ~l~lGt~~~g~~~~~--~~~-~~~~~l~~al~~~~~~GGin~~DTA~-------g~sE~~lG~~l~~~~~~~~~~~~~~~ 75 (331)
.||++.|++..|... ++. ...+-++.+ . ++|||-+ -.+++.+-+|.++.+. .++-++
T Consensus 4 ~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y-----~----~~f~~VEiN~TFYa~p~~~t~~~W~~~~p~----~FrFsv 70 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYPEGLKKKEFLAYY-----A----SHFNTVEINSTFYAPPSPETVLRWAEETPD----DFRFSV 70 (263)
T ss_pred EEeecCCCcccccccccCcccchhhHHHHH-----h----ccCCEEEECCcccCCCCHHHHHHHHHhCCC----CeEEEE
Confidence 466677776444442 111 122234444 2 2366555 5688888899887665 466677
Q ss_pred eecccccCCCCCCC-HHHHHHHHHHHHHHcCCCcccEEEEecCCC
Q 020082 76 RGLTKWVPPPVKMT-SSIVRESIDVSRRRMDVPCLDMLQFHWWDY 119 (331)
Q Consensus 76 ~~~~k~~~~~~~~~-~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~ 119 (331)
|...........-. -..+.+.+.+-++-|| +.+..+++.-|..
T Consensus 71 K~~~~iTH~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Pps 114 (263)
T COG1801 71 KAPRAITHQRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPS 114 (263)
T ss_pred EecccccchhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCc
Confidence 66543333111001 2345556666666777 4799999988754
No 130
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=38.45 E-value=2e+02 Score=23.54 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=55.5
Q ss_pred EEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHc--C-CCeeeecccccccc---cChhhhHHHHH
Q 020082 112 LQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--G-IPVVSNQVQHSVVD---MRPQQKMAELC 185 (331)
Q Consensus 112 ~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~--~-~~~~~vq~~~nl~~---~~~~~~~~~~~ 185 (331)
+|+..|.... .+++++..-+=-++.-|+++=|.+.+.....++.+. + .++.+|--++..-. ++.+.++.+..
T Consensus 2 ~yf~~pG~eN--T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L 79 (186)
T COG1751 2 VYFEKPGKEN--TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKEL 79 (186)
T ss_pred ccccCCcccc--hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHH
Confidence 4555555433 367777766667778889998877665555555542 2 44555554444321 23356899999
Q ss_pred HHhCCeEEEccccccc
Q 020082 186 QLTGVKLITYGTVMGG 201 (331)
Q Consensus 186 ~~~gi~via~~~l~~G 201 (331)
+++|..+..-+-...|
T Consensus 80 ~erGa~v~~~sHalSg 95 (186)
T COG1751 80 KERGAKVLTQSHALSG 95 (186)
T ss_pred HHcCceeeeehhhhhc
Confidence 9999988877654444
No 131
>PRK05588 histidinol-phosphatase; Provisional
Probab=38.22 E-value=2.8e+02 Score=24.34 Aligned_cols=102 Identities=14% Similarity=0.107 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCCcccEEEEecCCCCC---------chHHH----HHHHHHHHHH-cCcccEEecCc----c-------
Q 020082 94 RESIDVSRRRMDVPCLDMLQFHWWDYSN---------PGYLD----ALNHLTDLKE-EGKIKTVALTN----F------- 148 (331)
Q Consensus 94 ~~~~~~SL~rLg~d~lDl~~lH~~d~~~---------~~~~e----~~~~l~~l~~-~Gkir~iGvS~----~------- 148 (331)
...+++.|++...|++ +..+|..+... .+.++ =++.+.++++ .|++..+|=-. +
T Consensus 80 ~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlgH~Dl~~r~~~~~~~~ 158 (255)
T PRK05588 80 IEENKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLGHIDYISRYAKYEDKE 158 (255)
T ss_pred HHHHHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCccCHhHHHHcCcccccc
Confidence 4555777887787777 78889854211 01233 3366777776 46666555221 0
Q ss_pred -----cHHHH----HHHHHcCCCeeeecccccc-cccChhhhHHHHHHHhCCeEEEcc
Q 020082 149 -----DTERL----RIILENGIPVVSNQVQHSV-VDMRPQQKMAELCQLTGVKLITYG 196 (331)
Q Consensus 149 -----~~~~l----~~~~~~~~~~~~vq~~~nl-~~~~~~~~~~~~~~~~gi~via~~ 196 (331)
-...+ +.+.+.+..+.+|--.+.. ....+...++..|++.|+.+++.+
T Consensus 159 ~~~~~~~~~~~~il~~~~~~g~~lEINt~~l~~~~~~~~~~~~l~~~~~~g~~~i~lg 216 (255)
T PRK05588 159 IYYDEFKEIIDEILKVLIEKEKVLEINTRRLDDKRSVENLVKIYKRFYELGGKYITLG 216 (255)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCEEEEECcccCCCCCCCCHHHHHHHHHHcCCcEEEEE
Confidence 01122 2333345556555422211 112223457778888887754444
No 132
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=38.04 E-value=1.3e+02 Score=25.64 Aligned_cols=85 Identities=18% Similarity=0.173 Sum_probs=51.2
Q ss_pred CcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCCeeeeccccc-ccccChhhhHHHHH
Q 020082 107 PCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHS-VVDMRPQQKMAELC 185 (331)
Q Consensus 107 d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~vq~~~n-l~~~~~~~~~~~~~ 185 (331)
.-..+..+.+.. ..+. ...|.+.|- ..+-..-.+.+.|.++++ |....++-+..+ .-.......++++|
T Consensus 21 ~~~~V~~l~R~~-----~~~~---~~~l~~~g~-~vv~~d~~~~~~l~~al~-g~d~v~~~~~~~~~~~~~~~~~li~Aa 90 (233)
T PF05368_consen 21 AGFSVRALVRDP-----SSDR---AQQLQALGA-EVVEADYDDPESLVAALK-GVDAVFSVTPPSHPSELEQQKNLIDAA 90 (233)
T ss_dssp TTGCEEEEESSS-----HHHH---HHHHHHTTT-EEEES-TT-HHHHHHHHT-TCSEEEEESSCSCCCHHHHHHHHHHHH
T ss_pred CCCCcEEEEecc-----chhh---hhhhhcccc-eEeecccCCHHHHHHHHc-CCceEEeecCcchhhhhhhhhhHHHhh
Confidence 346677777654 1222 445556666 356666667888888887 544444444432 21122346799999
Q ss_pred HHhCCeEEEccccccc
Q 020082 186 QLTGVKLITYGTVMGG 201 (331)
Q Consensus 186 ~~~gi~via~~~l~~G 201 (331)
++.||..+.++.++..
T Consensus 91 ~~agVk~~v~ss~~~~ 106 (233)
T PF05368_consen 91 KAAGVKHFVPSSFGAD 106 (233)
T ss_dssp HHHT-SEEEESEESSG
T ss_pred hccccceEEEEEeccc
Confidence 9999999999887654
No 133
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=37.82 E-value=3.3e+02 Score=25.50 Aligned_cols=16 Identities=13% Similarity=0.177 Sum_probs=10.5
Q ss_pred CeEEEccccccccccc
Q 020082 190 VKLITYGTVMGGLLSE 205 (331)
Q Consensus 190 i~via~~~l~~G~L~g 205 (331)
..+++.+|=|.|.+.+
T Consensus 258 ~~~lg~G~gA~s~~~~ 273 (370)
T PRK06294 258 RPFLGLGVSASQYLHG 273 (370)
T ss_pred CCEEEEcCCcceecCC
Confidence 4577777777776644
No 134
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=37.57 E-value=3.6e+02 Score=25.42 Aligned_cols=38 Identities=21% Similarity=0.290 Sum_probs=19.5
Q ss_pred CchhhHHHH---HHHHHHHhhhcCCccEEECCC--CchHHHHHHHHh
Q 020082 20 GRRRRCHAS---LRRCRSHHLRHGRSLSFDFVD--GPAEDLYGIFIN 61 (331)
Q Consensus 20 ~~~~~~~~~---l~~al~~~~~~GGin~~DTA~--g~sE~~lG~~l~ 61 (331)
.+.++-.++ ...|-..|.++| ||--+ |..-=+|-++|.
T Consensus 139 mt~~eI~~ii~~f~~AA~rA~~AG----FDgVEIH~AhGYLi~qFls 181 (363)
T COG1902 139 LTEEEIEEVIEDFARAARRAKEAG----FDGVEIHGAHGYLLSQFLS 181 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcC----CCEEEEeeccchHHHHhcC
Confidence 455544444 444445566787 77665 222244455555
No 135
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=37.40 E-value=34 Score=27.07 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=20.9
Q ss_pred cChhhhHHHHHHHhCCeEEEccccc
Q 020082 175 MRPQQKMAELCQLTGVKLITYGTVM 199 (331)
Q Consensus 175 ~~~~~~~~~~~~~~gi~via~~~l~ 199 (331)
+..-.++++.|+++||.+++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 3444689999999999999998775
No 136
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=37.39 E-value=1.4e+02 Score=27.66 Aligned_cols=69 Identities=19% Similarity=0.221 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCccc-EEecCcccHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEEcc
Q 020082 127 ALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYG 196 (331)
Q Consensus 127 ~~~~l~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~-~~~~~~~~~~~~~gi~via~~ 196 (331)
-++.+.+|++...|- ..|=|.++...++.+++.+ .++++|...+..-- .....+...|+++|+.++.++
T Consensus 210 d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~-a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 210 DIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGR-AVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred CHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcC-CCCEEecCccccCCHHHHHHHHHHHHHcCCeecccc
Confidence 466777888887765 5566678899999998865 47888877654311 223578999999999988764
No 137
>PRK10200 putative racemase; Provisional
Probab=37.16 E-value=2.6e+02 Score=24.32 Aligned_cols=67 Identities=13% Similarity=0.062 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEEecCCCC------------CchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHH
Q 020082 89 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS------------NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII 156 (331)
Q Consensus 89 ~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~------------~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~ 156 (331)
+.+.+++=++..-.+++.|+++.+.+|.++.. .+ .....+.++.|.+.| +..|-+...++......
T Consensus 15 T~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~l~~~~~~L~~~g-~~~iviaCNTah~~~~~ 92 (230)
T PRK10200 15 TIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKT-GDILAEAALGLQRAG-AEGIVLCTNTMHKVADA 92 (230)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchH-HHHHHHHHHHHHHcC-CCEEEECCchHHHHHHH
Confidence 56667777778888899999999999987421 12 456777788888887 78888887776554333
Q ss_pred H
Q 020082 157 L 157 (331)
Q Consensus 157 ~ 157 (331)
+
T Consensus 93 l 93 (230)
T PRK10200 93 I 93 (230)
T ss_pred H
Confidence 3
No 138
>PRK07329 hypothetical protein; Provisional
Probab=37.13 E-value=2.9e+02 Score=24.20 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCCcccEEEEecCCCCC--------chHHHHH----HHHHHHHHcC-cccEEecCcc----------c--
Q 020082 95 ESIDVSRRRMDVPCLDMLQFHWWDYSN--------PGYLDAL----NHLTDLKEEG-KIKTVALTNF----------D-- 149 (331)
Q Consensus 95 ~~~~~SL~rLg~d~lDl~~lH~~d~~~--------~~~~e~~----~~l~~l~~~G-kir~iGvS~~----------~-- 149 (331)
..++.-|.+...||+ +.-+|+.+... .+.++++ +.+.++++.+ .+..+|=-.. +
T Consensus 83 ~~~~~~l~~~~~Dyv-IgSvH~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~fdvlgHpDl~~r~~~~~~~~~~ 161 (246)
T PRK07329 83 DDILDFLANKDFDLK-LLSVHHNGVYDYLDDEVADMDKKELLQEYFEKMEEAIGRVHDADVLAHFDYGLRLFDLTVEELK 161 (246)
T ss_pred HHHHHHhccCCCCeE-EEEEEEcCCCCCccHHHhcCCHHHHHHHHHHHHHHHHHccCCCCEeeeccHHHHhCCCCCcChH
Confidence 445555666777888 88889863210 1133444 7788888876 7766663221 1
Q ss_pred H--HH----HHHHHHcCCCeeeeccccc-ccccChhhhHHHHHHHhCCeEEEccc
Q 020082 150 T--ER----LRIILENGIPVVSNQVQHS-VVDMRPQQKMAELCQLTGVKLITYGT 197 (331)
Q Consensus 150 ~--~~----l~~~~~~~~~~~~vq~~~n-l~~~~~~~~~~~~~~~~gi~via~~~ 197 (331)
. .. ++.+.+.+..+.+|-..+. -.....-..+++.|++.|+..+..+.
T Consensus 162 ~~~~~~~~i~~~~~~~~~~lEiNt~~~~~~~~~~~~~~~l~~~~~~g~~~i~~gS 216 (246)
T PRK07329 162 AFEPQLTRIFAKMIDNDLAFELNTKSMYLYGNEGLYRYAIELYKQLGGKLFSIGS 216 (246)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECcccccCCCCcchHHHHHHHHHcCCeEEEecC
Confidence 1 11 2233334655666654321 11111114568888888876454443
No 139
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=37.10 E-value=3.3e+02 Score=24.89 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHcCcccEEe-cCcccHHHHHHHHH
Q 020082 125 LDALNHLTDLKEEGKIKTVA-LTNFDTERLRIILE 158 (331)
Q Consensus 125 ~e~~~~l~~l~~~Gkir~iG-vS~~~~~~l~~~~~ 158 (331)
++..+.++.++++|.++-|| +|..+|++++.+.+
T Consensus 273 ~~~a~~~~~f~~~g~vnIvGGCCGTTPeHIraia~ 307 (311)
T COG0646 273 EYMAEALAEFAEEGGVNIVGGCCGTTPEHIRAIAE 307 (311)
T ss_pred HHHHHHHHHHHHhCCceeeccccCCCHHHHHHHHH
Confidence 57888999999999999996 66789999988875
No 140
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=37.05 E-value=1.9e+02 Score=28.20 Aligned_cols=72 Identities=11% Similarity=0.114 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEEe-cCCCCCchHHHHHHHHHHHHHcCcccEEecC-cccHHHHHHHHHcCCCeeee
Q 020082 89 TSSIVRESIDVSRRRMDVPCLDMLQFH-WWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSN 166 (331)
Q Consensus 89 ~~~~i~~~~~~SL~rLg~d~lDl~~lH-~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS-~~~~~~l~~~~~~~~~~~~v 166 (331)
+++.++... .+|.|++=+.+.. .|.. .. .+....+.+... ++.+||- |-+++.+.++++. ..++++
T Consensus 266 ~~eda~~a~-----~~GaD~lGfIf~~~SpR~-V~--~~~a~~i~~~l~---v~~VgVfv~~~~~~i~~i~~~-~~lD~v 333 (454)
T PRK09427 266 RPQDAKAAY-----DAGAVYGGLIFVEKSPRY-VS--LEQAQEIIAAAP---LRYVGVFRNADIEDIVDIAKQ-LSLAAV 333 (454)
T ss_pred CHHHHHHHH-----hCCCCEEeeEeCCCCCCC-CC--HHHHHHHHHhCC---CCEEEEEeCCCHHHHHHHHHH-cCCCEE
Confidence 455555444 4798988886433 3322 22 233333333322 8899988 6788889888773 478999
Q ss_pred cccccc
Q 020082 167 QVQHSV 172 (331)
Q Consensus 167 q~~~nl 172 (331)
|++-+-
T Consensus 334 QLHG~e 339 (454)
T PRK09427 334 QLHGDE 339 (454)
T ss_pred EeCCCC
Confidence 998763
No 141
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=37.03 E-value=84 Score=22.43 Aligned_cols=31 Identities=26% Similarity=0.262 Sum_probs=26.2
Q ss_pred CchhHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 020082 238 GWSQFQVLLQTLKRIASKHGVSIPVVAVRYIL 269 (331)
Q Consensus 238 ~~~~~~~~~~~l~~ia~~~g~s~aq~Al~~~l 269 (331)
-+++..+.+.+|.++|++.|++..+++. |+|
T Consensus 46 IP~~V~~sl~kL~~La~~N~v~feeLc~-YAL 76 (82)
T PF11020_consen 46 IPEKVMDSLSKLYKLAKENNVSFEELCV-YAL 76 (82)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCHHHHHH-HHH
Confidence 4578899999999999999999999764 444
No 142
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=36.93 E-value=1.7e+02 Score=26.16 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=52.2
Q ss_pred HHcCCCcccEEEEecCC----------CCCchHHHHH-HHHHHHHHcCcccEEecCcccHHHHHHHHHcCCCeeeecccc
Q 020082 102 RRMDVPCLDMLQFHWWD----------YSNPGYLDAL-NHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQH 170 (331)
Q Consensus 102 ~rLg~d~lDl~~lH~~d----------~~~~~~~e~~-~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~vq~~~ 170 (331)
+-+.++.+|.+++--.| ...+.+.+.+ +..+..++.|| .+|+...+++...++++.|..+.++....
T Consensus 163 ~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk--~~G~~~~~~~~a~~~~~~G~~~v~~g~D~ 240 (267)
T PRK10128 163 EILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGK--AAGFLAVDPDMAQKCLAWGANFVAVGVDT 240 (267)
T ss_pred HHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCC--eEEEcCCCHHHHHHHHHcCCcEEEEChHH
Confidence 33456889998886432 2223233322 23334778888 57887778899999998888898888888
Q ss_pred cccccChhhhHHHHHH
Q 020082 171 SVVDMRPQQKMAELCQ 186 (331)
Q Consensus 171 nl~~~~~~~~~~~~~~ 186 (331)
+++.+.. +..+...+
T Consensus 241 ~~l~~~~-~~~~~~~~ 255 (267)
T PRK10128 241 MLYTDAL-DQRLAMFK 255 (267)
T ss_pred HHHHHHH-HHHHHHHh
Confidence 8774332 33444443
No 143
>PRK10302 hypothetical protein; Provisional
Probab=36.88 E-value=2.7e+02 Score=25.06 Aligned_cols=97 Identities=6% Similarity=-0.087 Sum_probs=53.2
Q ss_pred eeeeccccCCCCCCchhhHHHHHHHHHHHhhhcCCccEEEC--CC--CchHHHHHHHHhhhhcCCCccchheeeeccccc
Q 020082 7 DVADEWRVGPYRPGRRRRCHASLRRCRSHHLRHGRSLSFDF--VD--GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWV 82 (331)
Q Consensus 7 l~lGt~~~g~~~~~~~~~~~~~l~~al~~~~~~GGin~~DT--A~--g~sE~~lG~~l~~~~~~~~~~~~~~~~~~~k~~ 82 (331)
||.+.|++..|.... .+.|..+-+. .|.++. +- -.+++.+-+|..+.|. .++-.+|......
T Consensus 4 IGtsgWsy~~W~g~~----~~~L~~Ya~~------F~tVEiNsTFY~~P~~~t~~~W~~~~P~----~F~F~vKa~r~iT 69 (272)
T PRK10302 4 IGLPQWQHPKWVRLG----ITSLEDYARH------FNCVEGNTTLYALPKPEIVLRWRDMTTD----DFRFCFKFPATIS 69 (272)
T ss_pred EEeCCCCCccccCcc----HHHHHHHHhh------CCEEEECccccCCCCHHHHHHHHHhCCC----CcEEEEEEchhhc
Confidence 555556665665442 2445555222 232222 22 5589999999988775 4666666554433
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCC
Q 020082 83 PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWD 118 (331)
Q Consensus 83 ~~~~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d 118 (331)
....-...+.....+-++++-|+ +.+=.+++--|.
T Consensus 70 H~~~L~~~~~~~~~F~~~~~pL~-~kLG~vL~QfPp 104 (272)
T PRK10302 70 HQAALRHCDDLVQEFFTRLAPLA-DRIGQYWLQLPA 104 (272)
T ss_pred CCccccChHHHHHHHHHHHHHHh-hhheeEEEEcCC
Confidence 22111123333444555677776 677667777664
No 144
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=36.80 E-value=45 Score=22.41 Aligned_cols=28 Identities=7% Similarity=0.160 Sum_probs=23.7
Q ss_pred chhhHHHHHHHHHHHhhhcCCccEEECCC
Q 020082 21 RRRRCHASLRRCRSHHLRHGRSLSFDFVD 49 (331)
Q Consensus 21 ~~~~~~~~l~~al~~~~~~GGin~~DTA~ 49 (331)
++.++..+++.|-...+..| ..|+|--.
T Consensus 15 ~~~tA~~IIrqAK~~lV~~G-~~~Y~nkR 42 (59)
T PF11372_consen 15 SESTARDIIRQAKALLVQKG-FSFYNNKR 42 (59)
T ss_pred CHHHHHHHHHHHHHHHHHcC-CCcccCCc
Confidence 45788999999999999997 99998654
No 145
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=36.50 E-value=2.8e+02 Score=26.04 Aligned_cols=98 Identities=10% Similarity=0.127 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCc-ccEEecCcccHHHHHHHHHcCCCeeee
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVSN 166 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gk-ir~iGvS~~~~~~l~~~~~~~~~~~~v 166 (331)
++.+... .+-+.|.++|+++|.+- +|.. + ++-++.+..+.+.++ .+-.+++......++.+.+.+.+...+
T Consensus 19 ~s~~~k~-~ia~~L~~~Gv~~IEvG---~p~~--~--~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i 90 (363)
T TIGR02090 19 LTVEQKV-EIARKLDELGVDVIEAG---FPIA--S--EGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSIHT 90 (363)
T ss_pred CCHHHHH-HHHHHHHHcCCCEEEEe---CCCC--C--hHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEEEE
Confidence 4555444 44555999999999974 2321 1 223566666665554 455566677788899988876543333
Q ss_pred ccccccc------ccCh------hhhHHHHHHHhCCeEE
Q 020082 167 QVQHSVV------DMRP------QQKMAELCQLTGVKLI 193 (331)
Q Consensus 167 q~~~nl~------~~~~------~~~~~~~~~~~gi~vi 193 (331)
-+.-|.. .+.. -.+.+++|++.|+.+.
T Consensus 91 ~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~ 129 (363)
T TIGR02090 91 FIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVE 129 (363)
T ss_pred EEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 2222221 1111 1367889999998653
No 146
>PRK02866 cyanate hydratase; Validated
Probab=36.13 E-value=63 Score=26.10 Aligned_cols=63 Identities=24% Similarity=0.299 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeecccCCcHhHHHHhhchhcCCCCHHHHHHHHHH
Q 020082 247 QTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEV 311 (331)
Q Consensus 247 ~~l~~ia~~~g~s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~~~a~~~~L~~~~~~~l~~~ 311 (331)
+.+.+.-.+.|+|-.++|=+=-++.-.+++++-|.++.++++.+...+.+ .|+++....|...
T Consensus 8 e~Ll~AK~~kGLTw~~IA~~iG~S~v~vaaa~lGQ~~ls~e~A~kla~~L--gL~~~~~~~l~~~ 70 (147)
T PRK02866 8 EKILAAKKEKGLTWADIAEAIGLSEVWVTAALLGQMTLPAEEAEKVAELL--GLDEDAVALLQEV 70 (147)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHhCCCCCCHHHHHHHHHHh--CCCHHHHHHHhcC
Confidence 34444444556666666655555555556666776666688888887765 8888887777654
No 147
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=35.72 E-value=3.5e+02 Score=25.46 Aligned_cols=103 Identities=13% Similarity=0.088 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCCeeeecccccccc
Q 020082 95 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVD 174 (331)
Q Consensus 95 ~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~ 174 (331)
.++...+..| +..=|-+++..+.+ ..++..+..+...-.+...-+...+.+.+++++....+..++..+.|+.-
T Consensus 87 ~Ai~~~l~al-l~~Gd~Vl~~~~~y-----~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~tklV~ie~p~NPtg 160 (388)
T PRK07811 87 AATDCLLRAV-LRPGDHIVIPNDAY-----GGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPRTKLIWVETPTNPLL 160 (388)
T ss_pred HHHHHHHHHH-hCCCCEEEEcCCCc-----hHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcCCeEEEEECCCCCcc
Confidence 3344444444 23345566655543 22333333322211222222333567788877654456666667777742
Q ss_pred c-ChhhhHHHHHHHhCCeEEEccccccccc
Q 020082 175 M-RPQQKMAELCQLTGVKLITYGTVMGGLL 203 (331)
Q Consensus 175 ~-~~~~~~~~~~~~~gi~via~~~l~~G~L 203 (331)
. ..-+.+.+.|+++|+.++.=.+.+.+.+
T Consensus 161 ~~~dl~~I~~la~~~gi~lIvD~a~a~~~~ 190 (388)
T PRK07811 161 SITDIAALAELAHDAGAKVVVDNTFASPYL 190 (388)
T ss_pred eecCHHHHHHHHHHcCCEEEEECCCCcccc
Confidence 2 2235789999999999998887766543
No 148
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=35.60 E-value=1.9e+02 Score=24.75 Aligned_cols=73 Identities=15% Similarity=0.293 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCccc----HHHHHHHHHcCCCeee
Q 020082 90 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD----TERLRIILENGIPVVS 165 (331)
Q Consensus 90 ~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~----~~~l~~~~~~~~~~~~ 165 (331)
...+.+.+++.++.+|.+ +.++ .+.... .++..+.++.+.++| +..|=++..+ ...+.++.+.|+|+..
T Consensus 13 ~~~~~~g~~~~a~~~g~~-~~~~----~~~~~d-~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYE-VEIV----FDAQND-PEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp HHHHHHHHHHHHHHHTCE-EEEE----EESTTT-HHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHcCCE-EEEe----CCCCCC-HHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhcCceEEE
Confidence 456888999999999954 3333 222222 577889999999888 8888877544 3567777777887666
Q ss_pred eccc
Q 020082 166 NQVQ 169 (331)
Q Consensus 166 vq~~ 169 (331)
+-..
T Consensus 86 ~d~~ 89 (257)
T PF13407_consen 86 VDSD 89 (257)
T ss_dssp ESST
T ss_pred Eecc
Confidence 5444
No 149
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=35.53 E-value=4.1e+02 Score=25.54 Aligned_cols=61 Identities=11% Similarity=0.087 Sum_probs=37.9
Q ss_pred cEEecCcccHHHHHHHHHcCCCeeeecccccccccC-hhhhHHHHHHHhCCeEEEccccccc
Q 020082 141 KTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITYGTVMGG 201 (331)
Q Consensus 141 r~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~~-~~~~~~~~~~~~gi~via~~~l~~G 201 (331)
+-+-+...+++.+++++....+..++..+-|+.-.- .-.++.+.|+++|+-++.=.+++.+
T Consensus 130 ~v~~vd~~d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~ 191 (431)
T PRK08248 130 TVKFVDPSDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASP 191 (431)
T ss_pred EEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCcc
Confidence 333334446777777765444555666566653221 2357888899999888877776543
No 150
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=35.51 E-value=3.1e+02 Score=24.77 Aligned_cols=102 Identities=9% Similarity=0.028 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEE-ecCCCC-CchHHH---HHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCC
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDMLQF-HWWDYS-NPGYLD---ALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 162 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~~l-H~~d~~-~~~~~e---~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~ 162 (331)
.+.+.+.+..++.+ .-|-|-||+=-- -+|... .+.-+| +...++.++++-.+ -|.|-++.++.++++++.|..
T Consensus 35 ~~~~~a~~~a~~~~-~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~-~ISIDT~~~~va~~AL~~Gad 112 (282)
T PRK11613 35 NSLIDAVKHANLMI-NAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV-WISVDTSKPEVIRESAKAGAH 112 (282)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEECCCHHHHHHHHHcCCC
Confidence 35566555555533 458888888422 234332 111233 66677777755233 478889999999999998754
Q ss_pred eeeecccccccccChhhhHHHHHHHhCCeEEEccc
Q 020082 163 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 197 (331)
Q Consensus 163 ~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~ 197 (331)
+ +|-+ .++ . +.++++.+++.|+.++.+..
T Consensus 113 i-INDI-~g~-~---d~~~~~~~a~~~~~vVlmh~ 141 (282)
T PRK11613 113 I-INDI-RSL-S---EPGALEAAAETGLPVCLMHM 141 (282)
T ss_pred E-EEEC-CCC-C---CHHHHHHHHHcCCCEEEEcC
Confidence 3 2222 222 1 23678889999999998853
No 151
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=35.39 E-value=1.5e+02 Score=27.32 Aligned_cols=88 Identities=19% Similarity=0.192 Sum_probs=59.9
Q ss_pred ccEEEEecCCCCCchHHHHHHHHHHHHHcCccc-EEecCcccHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHH
Q 020082 109 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 186 (331)
Q Consensus 109 lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~-~~~~~~~~~~~ 186 (331)
+++.++-.|-+ .+-++.+.++++.-.+. ..|=|.++...+..+++.+ .++++|+..+.+-. .....+...|+
T Consensus 198 ~~~~~iEeP~~-----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~-~~dvi~~d~~~~GGit~~~~~~~~A~ 271 (324)
T TIGR01928 198 YQLLYIEEPFK-----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELG-NVKVINIKPGRLGGLTEVQKAIETCR 271 (324)
T ss_pred CCCcEEECCCC-----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcC-CCCEEEeCcchhcCHHHHHHHHHHHH
Confidence 34555555432 23457788888776664 6677788999999988755 47778877664321 12357899999
Q ss_pred HhCCeEEEcccccccc
Q 020082 187 LTGVKLITYGTVMGGL 202 (331)
Q Consensus 187 ~~gi~via~~~l~~G~ 202 (331)
.+|+.++..+.+..|+
T Consensus 272 ~~gi~~~~~~~~es~i 287 (324)
T TIGR01928 272 EHGAKVWIGGMLETGI 287 (324)
T ss_pred HcCCeEEEcceEcccH
Confidence 9999999876665553
No 152
>smart00642 Aamy Alpha-amylase domain.
Probab=35.32 E-value=52 Score=27.06 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=19.1
Q ss_pred hhhHHHHHHHhCCeEEEcccccc
Q 020082 178 QQKMAELCQLTGVKLITYGTVMG 200 (331)
Q Consensus 178 ~~~~~~~~~~~gi~via~~~l~~ 200 (331)
-+.+++.|+++||.+|.=-++..
T Consensus 72 ~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 72 FKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred HHHHHHHHHHCCCEEEEEECCCC
Confidence 36899999999999998777654
No 153
>PRK00915 2-isopropylmalate synthase; Validated
Probab=35.20 E-value=4.6e+02 Score=25.97 Aligned_cols=98 Identities=11% Similarity=0.114 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCc-ccEEecCcccHHHHHHHHH----cCCC
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILE----NGIP 162 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gk-ir~iGvS~~~~~~l~~~~~----~~~~ 162 (331)
++.+.-. .+-+.|.++|+|+|.+= +|-. .+ .-+++++.+.+.++ .+..+++......++.+.+ .+.+
T Consensus 23 ~s~e~K~-~ia~~L~~~Gv~~IE~G---~p~~-s~---~d~~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~~~ 94 (513)
T PRK00915 23 LTVEEKL-QIAKQLERLGVDVIEAG---FPAS-SP---GDFEAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAEAP 94 (513)
T ss_pred CCHHHHH-HHHHHHHHcCCCEEEEc---CCCC-Ch---HHHHHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCCCC
Confidence 5666444 44555999999998884 2221 11 12444455544443 6666666555666777763 2332
Q ss_pred eeeecccccccc------cChh------hhHHHHHHHhCCeEE
Q 020082 163 VVSNQVQHSVVD------MRPQ------QKMAELCQLTGVKLI 193 (331)
Q Consensus 163 ~~~vq~~~nl~~------~~~~------~~~~~~~~~~gi~vi 193 (331)
...+-+.-|.+. ...+ .+.+++|+++|..+.
T Consensus 95 ~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~ 137 (513)
T PRK00915 95 RIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVE 137 (513)
T ss_pred EEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 222222222221 1111 368889999998763
No 154
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=35.01 E-value=2.6e+02 Score=26.19 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=55.4
Q ss_pred EEEecCCCCC----------chHHHHHHHHHHHHH-cCc---ccEEecC--cccHHHHHHHHH--cCCCeeeeccccccc
Q 020082 112 LQFHWWDYSN----------PGYLDALNHLTDLKE-EGK---IKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSVV 173 (331)
Q Consensus 112 ~~lH~~d~~~----------~~~~e~~~~l~~l~~-~Gk---ir~iGvS--~~~~~~l~~~~~--~~~~~~~vq~~~nl~ 173 (331)
+-||.+++.. ..++++++++.++.+ .|+ |+++=+. |-+.+.+.++.+ .+.++.++-++||..
T Consensus 219 iSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~ 298 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPF 298 (355)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccC
Confidence 6789886321 126788888887654 442 2344333 334566665554 255677777899986
Q ss_pred cc----Chh----hhHHHHHHHhCCeEEEccccccc
Q 020082 174 DM----RPQ----QKMAELCQLTGVKLITYGTVMGG 201 (331)
Q Consensus 174 ~~----~~~----~~~~~~~~~~gi~via~~~l~~G 201 (331)
.. .+. ..+.+..+++|+.++.+...+.-
T Consensus 299 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~d 334 (355)
T TIGR00048 299 PEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGDD 334 (355)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcc
Confidence 42 111 24566677889999998887653
No 155
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=34.77 E-value=3.8e+02 Score=24.93 Aligned_cols=15 Identities=7% Similarity=0.206 Sum_probs=12.0
Q ss_pred hhHHHHHHHhCCeEE
Q 020082 179 QKMAELCQLTGVKLI 193 (331)
Q Consensus 179 ~~~~~~~~~~gi~vi 193 (331)
..+++.+++++|.+-
T Consensus 236 p~ll~~l~~~~I~lE 250 (345)
T cd01321 236 PLLMDLVKKKNIAIE 250 (345)
T ss_pred HHHHHHHHHcCCeEE
Confidence 468899999988765
No 156
>smart00657 RPOL4c DNA-directed RNA-polymerase II subunit.
Probab=34.66 E-value=2.1e+02 Score=21.96 Aligned_cols=63 Identities=10% Similarity=0.056 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeecccCCcHhHHHHhhchhcCCCCHHHHHHHHHHhhcCC
Q 020082 242 FQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGK 316 (331)
Q Consensus 242 ~~~~~~~l~~ia~~~g~s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~~~a~~~~L~~~~~~~l~~~~~~~~ 316 (331)
..+.+..+.+...+++++..++|.=- + ..+++ +++++..+...+.+++++++..|-+.....+
T Consensus 53 ~~e~i~~~~~~L~~~~L~k~E~~~i~--N--------l~P~s--~~E~~~lI~sl~~r~~ee~l~~iL~~i~~~~ 115 (118)
T smart00657 53 NREIVRAVRTLLKSKKLHKFEIAQLG--N--------LRPET--AEEAQLLIPSLEERIDEEELEELLDDLSSLL 115 (118)
T ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHh--C--------CCCCC--HHHHHHHhhhhhccCCHHHHHHHHHHHHHhc
Confidence 34555666666677899888866422 2 23456 9999999999988899999998888776654
No 157
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=34.57 E-value=3.3e+02 Score=24.11 Aligned_cols=106 Identities=17% Similarity=0.065 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHc--CCCeee
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--GIPVVS 165 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~--~~~~~~ 165 (331)
.+++.+.+..++.++ -|-|+||+=. .|.. .+..++....+..+++.-. .-|-+-+++++.++++++. |. .-+
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~-~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~-~iI 96 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGG-LDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGK-CVV 96 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCC-CCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCC-cEE
Confidence 366777777777664 5999999854 2332 2213333333333333212 2377778999999999986 53 222
Q ss_pred eccccccccc-ChhhhHHHHHHHhCCeEEEccccccc
Q 020082 166 NQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 201 (331)
Q Consensus 166 vq~~~nl~~~-~~~~~~~~~~~~~gi~via~~~l~~G 201 (331)
|-+ |.... +....+++.+++.|..++.+..-..|
T Consensus 97 NsI--s~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g 131 (252)
T cd00740 97 NSI--NLEDGEERFLKVARLAKEHGAAVVVLAFDEQG 131 (252)
T ss_pred EeC--CCCCCccccHHHHHHHHHhCCCEEEeccCCCC
Confidence 332 22211 11246889999999999988654333
No 158
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=34.46 E-value=1.2e+02 Score=26.76 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEEecCC-CCCchHHHHHHHHHHHHHcCcccEEecCcccHH
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWD-YSNPGYLDALNHLTDLKEEGKIKTVALTNFDTE 151 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d-~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~ 151 (331)
-+-+.|.++++.-.++-+ -++.++|+.. +..+.-+--+..|..|++.=- --||+|.|+..
T Consensus 123 stl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g 183 (241)
T PF03102_consen 123 STLEEIERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDG 183 (241)
T ss_dssp --HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSS
T ss_pred CCHHHHHHHHHHHHhcCC---CCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCC
Confidence 367778888777645444 6899999874 233322335666666664433 57799998764
No 159
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=33.97 E-value=3.4e+02 Score=24.18 Aligned_cols=106 Identities=13% Similarity=0.231 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEEecCCC------CCchHHHHHHHHHHHHHcCcccEEecCcccH---------HH
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY------SNPGYLDALNHLTDLKEEGKIKTVALTNFDT---------ER 152 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~------~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~---------~~ 152 (331)
.++..+...+.. +..+|++ +++.|=...+ ....+....+-++.+++..---+||+..++. ..
T Consensus 70 ~n~~~l~~~L~~-~~~~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~ 146 (272)
T TIGR00676 70 ATREEIREILRE-YRELGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEED 146 (272)
T ss_pred CCHHHHHHHHHH-HHHCCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHH
Confidence 467777777775 4778844 2333322111 0111233444455555542234788776421 33
Q ss_pred HHHHH---HcCCCeeeecccccccccChhhhHHHHHHHhCCeEEEccccccccc
Q 020082 153 LRIIL---ENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLL 203 (331)
Q Consensus 153 l~~~~---~~~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l~~G~L 203 (331)
+.++. +.|..+.+-|.-|+. ..-..+++.|++.|+.+ |+--|++
T Consensus 147 ~~~L~~K~~aGA~f~iTQ~~fd~---~~~~~~~~~~~~~gi~~----PIi~Gi~ 193 (272)
T TIGR00676 147 IENLKRKVDAGADYAITQLFFDN---DDYYRFVDRCRAAGIDV----PIIPGIM 193 (272)
T ss_pred HHHHHHHHHcCCCeEeeccccCH---HHHHHHHHHHHHcCCCC----CEecccC
Confidence 44444 347778889998986 33357889999998765 5544543
No 160
>PRK09726 antitoxin HipB; Provisional
Probab=33.32 E-value=45 Score=24.08 Aligned_cols=56 Identities=11% Similarity=0.055 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeecccCCcHhHHHHhhchhcCCCC
Q 020082 246 LQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLD 301 (331)
Q Consensus 246 ~~~l~~ia~~~g~s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~~~a~~~~L~ 301 (331)
...++.+..+.|+|..++|-+--++++.|.-..-|.+..+++.+...+.+++.+++
T Consensus 14 ~~~lk~~R~~~gltq~elA~~~gvs~~tis~~e~g~~~ps~~~l~~ia~~lgv~~~ 69 (88)
T PRK09726 14 ANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMT 69 (88)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCcc
Confidence 36677777788888888777655555544444344433336667777776665543
No 161
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=32.31 E-value=3.2e+02 Score=25.80 Aligned_cols=77 Identities=16% Similarity=0.157 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEEccccccccc
Q 020082 127 ALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGGLL 203 (331)
Q Consensus 127 ~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~-~~~~~~~~~~~~~gi~via~~~l~~G~L 203 (331)
+...+..+...+-+...-+...+.+.+++++....+..++..+-|+.-. .+.+++.+.|+++|+-++.=..++.+.+
T Consensus 104 ~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~ 181 (386)
T PRK08045 104 SYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPAL 181 (386)
T ss_pred HHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcccc
Confidence 3444444444443332223445677777766544456666666776322 2235788889988988887777766543
No 162
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=32.15 E-value=2.6e+02 Score=27.13 Aligned_cols=66 Identities=15% Similarity=0.082 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcCcccE----EecCcccHHHHHHHHHc--CCCeeeecccccccccChhhhHHHHHHHhCCe
Q 020082 124 YLDALNHLTDLKEEGKIKT----VALTNFDTERLRIILEN--GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVK 191 (331)
Q Consensus 124 ~~e~~~~l~~l~~~Gkir~----iGvS~~~~~~l~~~~~~--~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~ 191 (331)
.+++.++++.+++.|.--. +|+-+.+.+.+++.++. ...++.+ .++++...+...+.+.+++.|.-
T Consensus 322 ~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~--~~~~l~P~PGT~l~~~~~~~g~~ 393 (472)
T TIGR03471 322 VEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTI--QVSLAAPYPGTELYDQAKQNGWI 393 (472)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCce--eeeecccCCCcHHHHHHHHCCCc
Confidence 5678888888888886543 26666777777766642 2234333 35666666777888888887763
No 163
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=32.05 E-value=2.2e+02 Score=27.42 Aligned_cols=89 Identities=11% Similarity=0.135 Sum_probs=55.5
Q ss_pred HHHcCCCcccEEEEecCCCC-CchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHH---c----CCCeeeecccccc
Q 020082 101 RRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE---N----GIPVVSNQVQHSV 172 (331)
Q Consensus 101 L~rLg~d~lDl~~lH~~d~~-~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~---~----~~~~~~vq~~~nl 172 (331)
.+.||++|. ++..|-.. .. ..+. ...+-+.|-+..+|....+++++++.+. . +.||-+|-+ .++
T Consensus 7 ~~~lgiryP---ii~gpMa~Gis-s~eL---VaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~ 78 (418)
T cd04742 7 KEDYGLRYA---YVAGAMARGIA-SAEL---VVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSP 78 (418)
T ss_pred HHHhCCCcc---EECCcccCCCC-CHHH---HHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCC
Confidence 466776655 44444331 11 1233 4455688999999999999999887774 1 234544443 333
Q ss_pred cccChhhhHHHHHHHhCCeEEEccc
Q 020082 173 VDMRPQQKMAELCQLTGVKLITYGT 197 (331)
Q Consensus 173 ~~~~~~~~~~~~~~~~gi~via~~~ 197 (331)
-+...+..+++.+.++||.++..+-
T Consensus 79 ~~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 79 DEPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred CCchhHHHHHHHHHHcCCCEEEecc
Confidence 2222346789999999998876653
No 164
>PRK05939 hypothetical protein; Provisional
Probab=31.97 E-value=4.5e+02 Score=24.91 Aligned_cols=86 Identities=14% Similarity=0.162 Sum_probs=51.5
Q ss_pred cEEEEecCCCCCchHHHHHHHHHHHHHcC-cccEEecCcccHHHHHHHHHcCCCeeeecccccccccCh-hhhHHHHHHH
Q 020082 110 DMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRP-QQKMAELCQL 187 (331)
Q Consensus 110 Dl~~lH~~d~~~~~~~e~~~~l~~l~~~G-kir~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~~~-~~~~~~~~~~ 187 (331)
|-+++..+.+.. ....+. .++..| ++..+-+ .+.+.+++++....+..++....|+.-.-. -+.+.+.|++
T Consensus 87 d~Vv~~~~~y~~--t~~~~~---~l~~~G~~v~~v~~--~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~ 159 (397)
T PRK05939 87 DHLVSSQFLFGN--TNSLFG---TLRGLGVEVTMVDA--TDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRE 159 (397)
T ss_pred CEEEECCCcccc--HHHHHH---HHHhcCCEEEEECC--CCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHH
Confidence 556665543321 122333 344444 3444433 467778877754456666777777643222 3578899999
Q ss_pred hCCeEEEcccccccc
Q 020082 188 TGVKLITYGTVMGGL 202 (331)
Q Consensus 188 ~gi~via~~~l~~G~ 202 (331)
+|+-++.=.+++.+.
T Consensus 160 ~gi~livD~t~a~~~ 174 (397)
T PRK05939 160 RGLLYVVDNTMTSPW 174 (397)
T ss_pred cCCEEEEECCccccc
Confidence 999998888776554
No 165
>PLN02428 lipoic acid synthase
Probab=31.81 E-value=3.6e+02 Score=25.24 Aligned_cols=99 Identities=19% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHcCCCcccEEEEecCCC----------CCchHHHHHHHHHHHHHc--Cccc----EEecCcccHHHHHHHHH--c
Q 020082 98 DVSRRRMDVPCLDMLQFHWWDY----------SNPGYLDALNHLTDLKEE--GKIK----TVALTNFDTERLRIILE--N 159 (331)
Q Consensus 98 ~~SL~rLg~d~lDl~~lH~~d~----------~~~~~~e~~~~l~~l~~~--Gkir----~iGvS~~~~~~l~~~~~--~ 159 (331)
++.|++|.---+|. +-|+++. .....++.++.|+.+++. |..- -+|+ .-+.+++.+.++ .
T Consensus 195 ~elL~~L~eAG~d~-i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~~Lr 272 (349)
T PLN02428 195 LGAVETVATSGLDV-FAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTMEDLR 272 (349)
T ss_pred HHHHHHHHHcCCCE-EccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHHHHH
Q ss_pred CCCeeeecc-cc-----------cccccChhhhHHHHHHHhCCeEEEcccc
Q 020082 160 GIPVVSNQV-QH-----------SVVDMRPQQKMAELCQLTGVKLITYGTV 198 (331)
Q Consensus 160 ~~~~~~vq~-~~-----------nl~~~~~~~~~~~~~~~~gi~via~~~l 198 (331)
...++++.+ +| ..+.++.-+.+-+++.+.|...++.+||
T Consensus 273 elgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~ 323 (349)
T PLN02428 273 AAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPL 323 (349)
T ss_pred HcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCc
No 166
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=31.68 E-value=1.8e+02 Score=24.13 Aligned_cols=92 Identities=16% Similarity=0.205 Sum_probs=55.6
Q ss_pred hcCCccEEECCC-----------CchHHHHHHHHhhhhcCCCccchheeeecccccCCCC-----CCCHHHHHHHHHHHH
Q 020082 38 RHGRSLSFDFVD-----------GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPV-----KMTSSIVRESIDVSR 101 (331)
Q Consensus 38 ~~GGin~~DTA~-----------g~sE~~lG~~l~~~~~~~~~~~~~~~~~~~k~~~~~~-----~~~~~~i~~~~~~SL 101 (331)
..+ |-|+||-. |..+.++-..+.+.+- ++++-+.--++|..++. .-.+..+.+-+++.|
T Consensus 78 a~~-v~fiDTD~itT~~~~~~y~gr~~P~~~~~i~~~r~----DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L 152 (187)
T COG3172 78 ANK-VAFIDTDFLTTQAFCKKYEGREHPFLQALIAEYRF----DLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQML 152 (187)
T ss_pred CCc-eEEEeccHHHHHHHHHHHcccCCchHHHHHhhccc----ceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHH
Confidence 344 99999976 5555566566665433 23333332344433221 235677888888888
Q ss_pred HHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcC
Q 020082 102 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG 138 (331)
Q Consensus 102 ~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~G 138 (331)
++-+..|+ -|..++...- ....+++.+++..++
T Consensus 153 ~~~~~~~v---~i~~~~y~eR-~~~~~~aV~ell~~~ 185 (187)
T COG3172 153 EENNIPFV---VIEGEDYLER-YLQAVEAVEELLGEK 185 (187)
T ss_pred HHhCCcEE---EEcCCCHHHH-HHHHHHHHHHHHhcc
Confidence 88876654 3445544333 456888888888776
No 167
>PF14502 HTH_41: Helix-turn-helix domain
Probab=31.53 E-value=52 Score=21.07 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=25.6
Q ss_pred HHHHHHHHHHcCCC--HHHHHHHHHHhCCCcee
Q 020082 246 LQTLKRIASKHGVS--IPVVAVRYILDQPAVAG 276 (331)
Q Consensus 246 ~~~l~~ia~~~g~s--~aq~Al~~~l~~~~v~~ 276 (331)
++.+.+++++++++ ..|-||.++-....|..
T Consensus 6 i~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~L 38 (48)
T PF14502_consen 6 IPTISEYSEKFGVSRGTIQNALKFLEENGAIKL 38 (48)
T ss_pred cCCHHHHHHHhCcchhHHHHHHHHHHHCCcEEe
Confidence 46788899999887 47999999999887753
No 168
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=31.29 E-value=94 Score=24.57 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHc
Q 020082 94 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 137 (331)
Q Consensus 94 ~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~ 137 (331)
|..+.+.|+.+....+|.++++..|.-.-...++...++.|.+.
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~ 97 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPK 97 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhh
Confidence 44455555555555677777777665443345566666666655
No 169
>PRK08609 hypothetical protein; Provisional
Probab=31.23 E-value=3.5e+02 Score=27.16 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=51.8
Q ss_pred CCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCc------cc-----HHHHHHH-HHcCCCeeeeccccccc
Q 020082 106 VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN------FD-----TERLRII-LENGIPVVSNQVQHSVV 173 (331)
Q Consensus 106 ~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~------~~-----~~~l~~~-~~~~~~~~~vq~~~nl~ 173 (331)
.||+ +.-+|++- ..+ .+++++.+.++.+.|.+.-||=-. +. .+.+.++ .+.|..+.+|-..+
T Consensus 429 ~D~v-I~SvH~~~-~~~-~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G~~lEINa~~~--- 502 (570)
T PRK08609 429 LDYV-IAAIHSSF-SQS-EEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETNTALELNANPN--- 502 (570)
T ss_pred hCEE-EEEeecCC-CCC-HHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhCCEEEEcCCcc---
Confidence 4666 77789753 233 467889999999999988887554 11 1333343 34565455554333
Q ss_pred ccChhhhHHHHHHHhCCeEE
Q 020082 174 DMRPQQKMAELCQLTGVKLI 193 (331)
Q Consensus 174 ~~~~~~~~~~~~~~~gi~vi 193 (331)
.......++..|.+.|+.++
T Consensus 503 r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 503 RLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred ccCccHHHHHHHHHcCCEEE
Confidence 22334678999999998643
No 170
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=31.22 E-value=2.4e+02 Score=22.67 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=36.8
Q ss_pred EEecCcccH--HHHHHHHHcCCCeeeecccccccccChhhhHHHHHHHhCCeEEEccccccccc
Q 020082 142 TVALTNFDT--ERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLL 203 (331)
Q Consensus 142 ~iGvS~~~~--~~l~~~~~~~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l~~G~L 203 (331)
-+|...|+. ..+..+.+.. .|+++... +.+.+ ++.+..+-+.++.+|..|.+.++.+
T Consensus 19 k~GlDgHd~gakvia~~l~d~-GfeVi~~g---~~~tp-~e~v~aA~~~dv~vIgvSsl~g~h~ 77 (143)
T COG2185 19 KLGLDGHDRGAKVIARALADA-GFEVINLG---LFQTP-EEAVRAAVEEDVDVIGVSSLDGGHL 77 (143)
T ss_pred ccCccccccchHHHHHHHHhC-CceEEecC---CcCCH-HHHHHHHHhcCCCEEEEEeccchHH
Confidence 457777754 4566666532 35544433 33444 5788888888999999998887754
No 171
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=31.16 E-value=1.1e+02 Score=26.23 Aligned_cols=98 Identities=10% Similarity=0.006 Sum_probs=54.8
Q ss_pred HHHHHHHHhhhcCCccEEECCC-CchHHHHHHHHhhhhcCCCccchheeeecccccCCCCCCCHHHHHHHHHHHHHHcCC
Q 020082 28 SLRRCRSHHLRHGRSLSFDFVD-GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDV 106 (331)
Q Consensus 28 ~l~~al~~~~~~GGin~~DTA~-g~sE~~lG~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~SL~rLg~ 106 (331)
-+..|.+.|.+.+|.-|...++ .-+-+...+..+..+. +..+.+.. + .+.+.+.+- ++.+
T Consensus 14 da~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~------~~~VgVf~---n----~~~~~i~~i----~~~~-- 74 (208)
T COG0135 14 DAKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPK------VKVVGVFV---N----ESIEEILEI----AEEL-- 74 (208)
T ss_pred HHHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCC------CCEEEEEC---C----CCHHHHHHH----HHhc--
Confidence 4455556667777677777677 7777777676665432 11222221 1 245544443 3444
Q ss_pred CcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccH
Q 020082 107 PCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT 150 (331)
Q Consensus 107 d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~ 150 (331)
.+|++|||.... .+.++.|.....-.-++++.++.-..
T Consensus 75 -~ld~VQlHG~e~-----~~~~~~l~~~~~~~v~kai~v~~~~~ 112 (208)
T COG0135 75 -GLDAVQLHGDED-----PEYIDQLKEELGVPVIKAISVSEEGD 112 (208)
T ss_pred -CCCEEEECCCCC-----HHHHHHHHhhcCCceEEEEEeCCccc
Confidence 489999999742 23333333333345778888876433
No 172
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=31.11 E-value=3.4e+02 Score=23.25 Aligned_cols=34 Identities=32% Similarity=0.482 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHcCcccEEecCcccHHHHHHHHHcC
Q 020082 126 DALNHLTDLKEEGKIKTVALTNFDTERLRIILENG 160 (331)
Q Consensus 126 e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~ 160 (331)
+-++++..|+++| |+--....|++.|...+.+.|
T Consensus 89 ~gl~ai~~L~~~g-i~v~~T~V~s~~Qa~~Aa~AG 122 (211)
T cd00956 89 DGLKAIKKLSEEG-IKTNVTAIFSAAQALLAAKAG 122 (211)
T ss_pred hHHHHHHHHHHcC-CceeeEEecCHHHHHHHHHcC
Confidence 4555666666665 322222245666666655554
No 173
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=30.58 E-value=4.5e+02 Score=24.45 Aligned_cols=56 Identities=20% Similarity=0.136 Sum_probs=39.6
Q ss_pred ccHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEEccccccccc
Q 020082 148 FDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGGLL 203 (331)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~vq~~~nl~~~-~~~~~~~~~~~~~gi~via~~~l~~G~L 203 (331)
.+.+.+++++....+..++....|+.-. .+-+++.+.|+++|+.++.=.+++.|.+
T Consensus 113 ~d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~ 169 (369)
T cd00614 113 DDPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYL 169 (369)
T ss_pred CCHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhc
Confidence 3567777776544566676677776422 2235789999999999999888877655
No 174
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=30.49 E-value=3.4e+02 Score=23.08 Aligned_cols=91 Identities=8% Similarity=0.053 Sum_probs=51.6
Q ss_pred CccEEECCC--CchHHHHHHHHhhhhcCCCccchhe-eeeccccc------------------------CCCCCCCHHHH
Q 020082 41 RSLSFDFVD--GPAEDLYGIFINRVRRERPPEFLDK-VRGLTKWV------------------------PPPVKMTSSIV 93 (331)
Q Consensus 41 Gin~~DTA~--g~sE~~lG~~l~~~~~~~~~~~~~~-~~~~~k~~------------------------~~~~~~~~~~i 93 (331)
|+-.+=|++ |.+=..+|.+|+.+..... ..+++ +|+..+.+ +....-+....
T Consensus 29 Gli~V~TG~GKGKTTAAlG~alRa~GhG~r-v~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~~g~tw~~~~~~~d~~aa 107 (198)
T COG2109 29 GLIIVFTGNGKGKTTAALGLALRALGHGLR-VGVVQFIKGGWKYGEEAALEKFGLGVEFHGMGEGFTWETQDREADIAAA 107 (198)
T ss_pred CeEEEEecCCCChhHHHHHHHHHHhcCCCE-EEEEEEeecCcchhHHHHHHhhccceeEEecCCceeCCCcCcHHHHHHH
Confidence 477788888 8888888888887665532 33333 23321110 00000122456
Q ss_pred HHHHHHHHHHcCCCcccEEEEecCCCC----CchHHHHHHHHH
Q 020082 94 RESIDVSRRRMDVPCLDMLQFHWWDYS----NPGYLDALNHLT 132 (331)
Q Consensus 94 ~~~~~~SL~rLg~d~lDl~~lH~~d~~----~~~~~e~~~~l~ 132 (331)
++..+.+++.|.....|++.|...... --+.+|+++.|.
T Consensus 108 ~~~w~~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~ 150 (198)
T COG2109 108 KAGWEHAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLK 150 (198)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHh
Confidence 677777788887777888877765321 111456655554
No 175
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=30.46 E-value=3.7e+02 Score=23.45 Aligned_cols=49 Identities=14% Similarity=0.040 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcC
Q 020082 85 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG 138 (331)
Q Consensus 85 ~~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~G 138 (331)
+..++.+.+..-.++.++.| .|+.+---..+..+ +++..+--++|++.|
T Consensus 97 Gr~f~a~eVL~Lt~~tR~LL----P~~~LsVTVPHiL~-ld~Qv~LA~~L~~~G 145 (242)
T PF04481_consen 97 GRRFSAEEVLALTRETRSLL----PDITLSVTVPHILP-LDQQVQLAEDLVKAG 145 (242)
T ss_pred CCeecHHHHHHHHHHHHHhC----CCCceEEecCcccc-HHHHHHHHHHHHHhC
Confidence 34567888888888888877 33333322223333 566666666666654
No 176
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=30.28 E-value=2.7e+02 Score=23.49 Aligned_cols=101 Identities=21% Similarity=0.231 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHcCCCcccEEEEecCC-CCCchHHHHHHHHHHHHHcCcccEEecCcccH--HHHHHHHHcCCCeeeecc
Q 020082 92 IVRESIDVSRRRMDVPCLDMLQFHWWD-YSNPGYLDALNHLTDLKEEGKIKTVALTNFDT--ERLRIILENGIPVVSNQV 168 (331)
Q Consensus 92 ~i~~~~~~SL~rLg~d~lDl~~lH~~d-~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~--~~l~~~~~~~~~~~~vq~ 168 (331)
.+...+.+.++..+...--+ .+--.+ ............+..|++.|- .+.+.++.. ..+..+.. .+++.+-+
T Consensus 100 ~~~~~l~~~l~~~~~~~~~l-vlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~~--l~~d~iKl 174 (241)
T smart00052 100 DLVPRVLELLEETGLPPQRL-ELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYLKR--LPVDLLKI 174 (241)
T ss_pred hHHHHHHHHHHHcCCCHHHE-EEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHHh--CCCCeEEE
Confidence 35566677777766553122 222111 111213455689999999997 566666543 33444433 35666666
Q ss_pred cccccccC--------hhhhHHHHHHHhCCeEEEccc
Q 020082 169 QHSVVDMR--------PQQKMAELCQLTGVKLITYGT 197 (331)
Q Consensus 169 ~~nl~~~~--------~~~~~~~~~~~~gi~via~~~ 197 (331)
..+++... .-+.++..|+..|+.+|+-++
T Consensus 175 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gV 211 (241)
T smart00052 175 DKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGV 211 (241)
T ss_pred CHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEecC
Confidence 65554221 124678899999999997764
No 177
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=30.16 E-value=1.1e+02 Score=25.16 Aligned_cols=68 Identities=25% Similarity=0.261 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHcC-cccEEecCccc--HHHHHHHHHcCCCeeeecccccccccChhhhHHHHHHHhCCeEEEccc
Q 020082 124 YLDALNHLTDLKEEG-KIKTVALTNFD--TERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 197 (331)
Q Consensus 124 ~~e~~~~l~~l~~~G-kir~iGvS~~~--~~~l~~~~~~~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~ 197 (331)
..+++.+|.+++..| +|..+|..+.. ...+..+. + +.+.+..|+= ...-...+..+++.|+.++.-+.
T Consensus 63 ~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll--~--~~i~~~~~~~--~~e~~~~i~~~~~~G~~viVGg~ 133 (176)
T PF06506_consen 63 GFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELL--G--VDIKIYPYDS--EEEIEAAIKQAKAEGVDVIVGGG 133 (176)
T ss_dssp HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHH--T---EEEEEEESS--HHHHHHHHHHHHHTT--EEEESH
T ss_pred HhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHh--C--CceEEEEECC--HHHHHHHHHHHHHcCCcEEECCH
Confidence 457899999988776 67777777654 45566655 3 3334444432 22235678888899998886553
No 178
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=30.13 E-value=1.3e+02 Score=27.91 Aligned_cols=192 Identities=14% Similarity=0.167 Sum_probs=83.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEEecC----CCCCchHHHHHHH--HHHHHHcCcccEEecCcccHHHHHHHHHcCC
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDMLQFHWW----DYSNPGYLDALNH--LTDLKEEGKIKTVALTNFDTERLRIILENGI 161 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~----d~~~~~~~e~~~~--l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~ 161 (331)
++.+.+.+..++ -+.+|.+-+ +=+|-. |+........|+. +.+|+++ |.+|+.+.|.++.+.|+
T Consensus 55 ~~~~~~~~~akr-ak~~Gm~vl--ldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~-------v~~yT~~vl~~l~~~G~ 124 (332)
T PF07745_consen 55 NDLEDVIALAKR-AKAAGMKVL--LDFHYSDFWADPGKQNKPAAWANLSFDQLAKA-------VYDYTKDVLQALKAAGV 124 (332)
T ss_dssp TSHHHHHHHHHH-HHHTT-EEE--EEE-SSSS--BTTB-B--TTCTSSSHHHHHHH-------HHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHH-HHHCCCeEE--EeecccCCCCCCCCCCCCccCCCCCHHHHHHH-------HHHHHHHHHHHHHHCCC
Confidence 466666666655 456665422 334533 3322212233333 2334433 56788888888888888
Q ss_pred Ceeeeccc--c--cccccC---h--h------hhHHHHHHHh--CCeEEEcccccccc-----ccccccCCCCCCCCCCC
Q 020082 162 PVVSNQVQ--H--SVVDMR---P--Q------QKMAELCQLT--GVKLITYGTVMGGL-----LSEKFLDTNLSIPFAGP 219 (331)
Q Consensus 162 ~~~~vq~~--~--nl~~~~---~--~------~~~~~~~~~~--gi~via~~~l~~G~-----L~g~~~~~~~~~~~~~~ 219 (331)
.|+.||+- . .++-.. . + ..-++.+++. ++.++.+-.-.+.. +...+....
T Consensus 125 ~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~~~~f~~l~~~g-------- 196 (332)
T PF07745_consen 125 TPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGDNDLYRWFFDNLKAAG-------- 196 (332)
T ss_dssp -ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSHHHHHHHHHHHHHTT--------
T ss_pred CccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCchHHHHHHHHHHHhcC--------
Confidence 99999983 3 333211 1 0 1234555554 36666553322110 111110000
Q ss_pred CCCCchhHHHHhhhh-ccCCc-hhHHHHHHHHHHHHHHcCCCH--HHHHHHHHHhCCCceeEeecccCCcHhHHHHhhch
Q 020082 220 PLNTPSLQKYKRMVD-AWGGW-SQFQVLLQTLKRIASKHGVSI--PVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAI 295 (331)
Q Consensus 220 ~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~l~~ia~~~g~s~--aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~~~a 295 (331)
.+++.+.- -|+.| .....+...+..+++++|... ++.+..|.+..+.-..-+.+..+ ..
T Consensus 197 -------~d~DviGlSyYP~w~~~l~~l~~~l~~l~~ry~K~V~V~Et~yp~t~~d~D~~~n~~~~~~----------~~ 259 (332)
T PF07745_consen 197 -------VDFDVIGLSYYPFWHGTLEDLKNNLNDLASRYGKPVMVVETGYPWTLDDGDGTGNIIGATS----------LI 259 (332)
T ss_dssp -------GG-SEEEEEE-STTST-HHHHHHHHHHHHHHHT-EEEEEEE---SBS--SSSS--SSSSST----------GG
T ss_pred -------CCcceEEEecCCCCcchHHHHHHHHHHHHHHhCCeeEEEeccccccccccccccccCcccc----------cc
Confidence 00111100 11122 246677788999999998653 67788888766654333333221 22
Q ss_pred hcCCCCHH-HHHHHHHHhhc
Q 020082 296 FMLSLDED-DVNSIQEVTKK 314 (331)
Q Consensus 296 ~~~~L~~~-~~~~l~~~~~~ 314 (331)
...|.|++ +.+.|.++...
T Consensus 260 ~~yp~t~~GQ~~~l~~l~~~ 279 (332)
T PF07745_consen 260 SGYPATPQGQADFLRDLINA 279 (332)
T ss_dssp TTS-SSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 34577765 33345555543
No 179
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=29.86 E-value=2.4e+02 Score=26.59 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=10.4
Q ss_pred hhHHHHHHHhCCeEEEc
Q 020082 179 QKMAELCQLTGVKLITY 195 (331)
Q Consensus 179 ~~~~~~~~~~gi~via~ 195 (331)
+.+++.|+++||.+|.-
T Consensus 61 ~~~L~~~~~~gIkvI~N 77 (362)
T PF07287_consen 61 RPLLPAAAEKGIKVITN 77 (362)
T ss_pred HHHHHHHHhCCCCEEEe
Confidence 35666666666666654
No 180
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=29.84 E-value=1e+02 Score=27.76 Aligned_cols=90 Identities=17% Similarity=0.197 Sum_probs=55.8
Q ss_pred HHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCc------ccHHHHHHHHHc-CCCeeeecccccc
Q 020082 100 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN------FDTERLRIILEN-GIPVVSNQVQHSV 172 (331)
Q Consensus 100 SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~------~~~~~l~~~~~~-~~~~~~vq~~~nl 172 (331)
++++...+.-|+..+..|....-. + +..++..-. .|=|+- |+...+.++.++ +++..++-+.||+
T Consensus 155 ~~kk~a~E~~~~~IIDsaaG~gCp---V---i~sl~~aD~--ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~ 226 (284)
T COG1149 155 ALKKHAKELADLLIIDSAAGTGCP---V---IASLKGADL--AILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNL 226 (284)
T ss_pred HHHHhhhhhcceeEEecCCCCCCh---H---HHhhccCCE--EEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCC
Confidence 444544444788888877433221 2 233333333 333332 333344444443 7899999999977
Q ss_pred cccChhhhHHHHHHHhCCeEEEccccccc
Q 020082 173 VDMRPQQKMAELCQLTGVKLITYGTVMGG 201 (331)
Q Consensus 173 ~~~~~~~~~~~~~~~~gi~via~~~l~~G 201 (331)
-+ . ++.++|.+.|+.+++.-|+..-
T Consensus 227 g~---s-~ie~~~~e~gi~il~~IPyd~~ 251 (284)
T COG1149 227 GD---S-EIEEYCEEEGIPILGEIPYDKD 251 (284)
T ss_pred Cc---h-HHHHHHHHcCCCeeEECCcchh
Confidence 43 2 7899999999999999998654
No 181
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=29.82 E-value=12 Score=24.02 Aligned_cols=13 Identities=0% Similarity=0.110 Sum_probs=7.4
Q ss_pred HhHHHHhhchhcC
Q 020082 286 AEHIQDTNAIFML 298 (331)
Q Consensus 286 ~~~l~e~~~a~~~ 298 (331)
.+.+.....+++.
T Consensus 38 ~~~~~~ia~~l~~ 50 (55)
T PF01381_consen 38 LDTLKKIAKALGV 50 (55)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHCC
Confidence 6666666555543
No 182
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.66 E-value=3.2e+02 Score=25.85 Aligned_cols=91 Identities=14% Similarity=0.044 Sum_probs=59.3
Q ss_pred EEEEecCCCCC----------chHHHHHHHHHHHH-HcCc---ccEEecC--cccHHHHHHHHH--cCC---Ceeeeccc
Q 020082 111 MLQFHWWDYSN----------PGYLDALNHLTDLK-EEGK---IKTVALT--NFDTERLRIILE--NGI---PVVSNQVQ 169 (331)
Q Consensus 111 l~~lH~~d~~~----------~~~~e~~~~l~~l~-~~Gk---ir~iGvS--~~~~~~l~~~~~--~~~---~~~~vq~~ 169 (331)
.+-||.++... ..++++++++.++. +.|+ |.|+=+. |-+.+.++++.+ .+. +..++-++
T Consensus 241 avSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEc
Confidence 36789886421 22788999988776 4454 4455454 345555554444 134 57888899
Q ss_pred ccccccC----h----hhhHHHHHHHhCCeEEEccccccc
Q 020082 170 HSVVDMR----P----QQKMAELCQLTGVKLITYGTVMGG 201 (331)
Q Consensus 170 ~nl~~~~----~----~~~~~~~~~~~gi~via~~~l~~G 201 (331)
||++... + -..+.+..+++||.+..+...+..
T Consensus 321 yNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~d 360 (373)
T PRK14459 321 LNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQE 360 (373)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCcC
Confidence 9997431 1 135788889999999999887653
No 183
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=29.57 E-value=4.2e+02 Score=24.21 Aligned_cols=43 Identities=14% Similarity=0.279 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHhCCCceeEeecccCCcHhHHHHh
Q 020082 247 QTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDT 292 (331)
Q Consensus 247 ~~l~~ia~~~g~------s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~ 292 (331)
.+|.++|++++. ++.++-..|+.... ...+..|+|+ |+.+-+.
T Consensus 226 ~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGitaGAST--P~~li~e 274 (298)
T PRK01045 226 NRLREVAEEAGAPAYLIDDASEIDPEWFKGVK-TVGVTAGASA--PEWLVQE 274 (298)
T ss_pred HHHHHHHHHHCCCEEEECChHHCcHHHhcCCC-EEEEEecCCC--CHHHHHH
Confidence 688899998874 67899999997654 4577899999 8876443
No 184
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=29.42 E-value=5.6e+02 Score=25.26 Aligned_cols=103 Identities=18% Similarity=0.197 Sum_probs=54.2
Q ss_pred CchHHHHHHHHhhhh-cCCCccchheeeecccccCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchH---H
Q 020082 50 GPAEDLYGIFINRVR-RERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGY---L 125 (331)
Q Consensus 50 g~sE~~lG~~l~~~~-~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~---~ 125 (331)
..+++.|-+++.+.. +.+++ .+.+.+. +.++-|-..++...+.++.+.++++.++.+.+..... +
T Consensus 67 ~G~~~~L~~aI~~~~~~~~P~----~I~V~sT-------C~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~ 135 (511)
T TIGR01278 67 RGSQTRLVDTVRRVDDRFKPD----LIVVTPS-------CTSSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAAD 135 (511)
T ss_pred cchHHHHHHHHHHHHHhcCCC----EEEEeCC-------ChHHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHH
Confidence 344677777777653 22221 1222221 2344454455555555655568899999998654322 2
Q ss_pred HHHHHHHH-H----------HHcCcccEEecCcc------cHHHHHHHHHc-CCCe
Q 020082 126 DALNHLTD-L----------KEEGKIKTVALTNF------DTERLRIILEN-GIPV 163 (331)
Q Consensus 126 e~~~~l~~-l----------~~~Gkir~iGvS~~------~~~~l~~~~~~-~~~~ 163 (331)
.++..+-+ + .+.++|.-||.++. +.+.++++++. |+.+
T Consensus 136 ~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~v 191 (511)
T TIGR01278 136 RTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEV 191 (511)
T ss_pred HHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 23222221 1 13456888898762 34566676653 5444
No 185
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=29.34 E-value=3e+02 Score=27.90 Aligned_cols=96 Identities=8% Similarity=-0.019 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecC-cccHHHHHHHHHcCCCeeeec
Q 020082 89 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQ 167 (331)
Q Consensus 89 ~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS-~~~~~~l~~~~~~~~~~~~vq 167 (331)
+.+.++.. ..+|.|++=+.+......... .+.+...+.+....-.|..+||. |-+++.+.++.+. ..++++|
T Consensus 12 ~~eda~~a-----~~~gaD~iGfIf~~~SpR~V~-~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~-~~ld~vQ 84 (610)
T PRK13803 12 DSALISKA-----VDMLPDFIGFIFYEKSPRFVG-NKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKK-NGIDFVQ 84 (610)
T ss_pred cHHHHHHH-----HHcCCCEEEEEecCCCCCCCC-HHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHh-cCCCEEE
Confidence 34545544 458999998876553322222 23314444443333357789996 7788899888773 4789999
Q ss_pred ccccccccChhhhHHHHHHHhCCeEE
Q 020082 168 VQHSVVDMRPQQKMAELCQLTGVKLI 193 (331)
Q Consensus 168 ~~~nl~~~~~~~~~~~~~~~~gi~vi 193 (331)
++-+.-. .....++..++.++.++
T Consensus 85 LHG~e~~--~~~~~~~~l~~~~~~ii 108 (610)
T PRK13803 85 LHGAESK--AEPAYCQRIYKKSIKKI 108 (610)
T ss_pred ECCCCCc--ccHHHHHHhhhcCCcEE
Confidence 9865311 11234444444455544
No 186
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=29.20 E-value=4.9e+02 Score=24.50 Aligned_cols=57 Identities=11% Similarity=0.075 Sum_probs=38.5
Q ss_pred CcccHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEEcccccccc
Q 020082 146 TNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGGL 202 (331)
Q Consensus 146 S~~~~~~l~~~~~~~~~~~~vq~~~nl~~~-~~~~~~~~~~~~~gi~via~~~l~~G~ 202 (331)
...+.+.+++++....+..++..+.|+.-. .+-+++.+.|+++|+.++.=..++.+.
T Consensus 132 d~~d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~ 189 (390)
T PRK08133 132 DLTDLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPA 189 (390)
T ss_pred CCCCHHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 334677787776544566776667776532 223689999999999998777655443
No 187
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=29.18 E-value=4.3e+02 Score=26.08 Aligned_cols=94 Identities=9% Similarity=-0.085 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCCeeeecccc
Q 020082 91 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQH 170 (331)
Q Consensus 91 ~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~vq~~~ 170 (331)
+.+.+..++ +..-|-|.||+=.-- ..+..+.+...++.+++...+ -|.|-+++++.++++++.|.++ +|-+
T Consensus 165 ~~i~~~A~~-~~~~GADIIDIG~~s----t~p~~~~v~~~V~~l~~~~~~-pISIDT~~~~v~eaAL~aGAdi-INsV-- 235 (499)
T TIGR00284 165 DGIEGLAAR-MERDGADMVALGTGS----FDDDPDVVKEKVKTALDALDS-PVIADTPTLDELYEALKAGASG-VIMP-- 235 (499)
T ss_pred HHHHHHHHH-HHHCCCCEEEECCCc----CCCcHHHHHHHHHHHHhhCCC-cEEEeCCCHHHHHHHHHcCCCE-EEEC--
Confidence 444444433 346688999985221 112234566677777766332 4788899999999999877432 2221
Q ss_pred cccccChhhhHHHHHHHhCCeEEEcc
Q 020082 171 SVVDMRPQQKMAELCQLTGVKLITYG 196 (331)
Q Consensus 171 nl~~~~~~~~~~~~~~~~gi~via~~ 196 (331)
+-. ....+++.+++.|+.++.+.
T Consensus 236 s~~---~~d~~~~l~a~~g~~vVlm~ 258 (499)
T TIGR00284 236 DVE---NAVELASEKKLPEDAFVVVP 258 (499)
T ss_pred Ccc---chhHHHHHHHHcCCeEEEEc
Confidence 211 12367888888888888774
No 188
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=29.18 E-value=3.7e+02 Score=24.29 Aligned_cols=95 Identities=12% Similarity=0.069 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcC----cccEEecCcccHHHHHHHHHc--CC
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG----KIKTVALTNFDTERLRIILEN--GI 161 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~G----kir~iGvS~~~~~~l~~~~~~--~~ 161 (331)
++.+ -+-.+-+.|..+|+|+|.+-+ |- .. +.-.+.++.+.+.| .+++.+++......++.+++. +.
T Consensus 20 ~s~~-~Ki~ia~~L~~~Gv~~IE~gf---P~--~~--~~e~e~~~~i~~~~~~~~~~~~~al~r~~~~die~a~~~~~~~ 91 (284)
T cd07942 20 MSVE-QKLRFFKLLVKIGFKEIEVGF---PS--AS--QTDFDFVRELIEEDLIPDDVTIQVLTQAREDLIERTFEALRGA 91 (284)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEEeC---CC--CC--HHHHHHHHHHHHccCCCCCCEEEEEcCCChhhHHHHHHHhCCC
Confidence 3444 445566779999999999863 32 22 22334555554554 467888888777778888775 33
Q ss_pred Ceeeeccc---------ccccccChh------hhHHHHHHHhCCe
Q 020082 162 PVVSNQVQ---------HSVVDMRPQ------QKMAELCQLTGVK 191 (331)
Q Consensus 162 ~~~~vq~~---------~nl~~~~~~------~~~~~~~~~~gi~ 191 (331)
....+.+. .|+ ++..+ .+++++++++|+.
T Consensus 92 ~~~~v~i~~~~Sd~h~~~~~-~~s~~e~~~~~~~~v~~a~~~g~~ 135 (284)
T cd07942 92 KKAIVHLYNATSPLQRRVVF-GKSKEEIIEIAVDGAKLVKELAAK 135 (284)
T ss_pred CCCEEEEEEcCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhccc
Confidence 21122222 221 12221 3678889998875
No 189
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.13 E-value=5.2e+02 Score=25.14 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc----eeEeecccCCcHhHHHHhhchh
Q 020082 247 QTLKRIASKHGVSIPVVAVRYILDQPAV----AGSMIGVRLGLAEHIQDTNAIF 296 (331)
Q Consensus 247 ~~l~~ia~~~g~s~aq~Al~~~l~~~~v----~~~i~G~~~~~~~~l~e~~~a~ 296 (331)
+.+++||.+.|..|..+.|- +|.+.+- .+.|+---+ ++++...++.-
T Consensus 385 Ksl~aIAd~~grdp~da~lD-~Lardg~~~~~~~~i~an~s--~e~l~rilahp 435 (579)
T COG3653 385 KSLKAIADERGRDPLDAFLD-VLARDGERAGRWTTIVANMS--PEDLNRILAHP 435 (579)
T ss_pred hhHHHHHHHhCCCHHHHHHH-HHHhcccccceeEEEEecCC--cchHHHHhcCC
Confidence 78999999999999999888 6655432 122332223 77777776654
No 190
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=29.13 E-value=68 Score=23.14 Aligned_cols=68 Identities=12% Similarity=0.051 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHc-CcccEEecCcccHHHHHHHHHc-CCCeeeec
Q 020082 92 IVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE-GKIKTVALTNFDTERLRIILEN-GIPVVSNQ 167 (331)
Q Consensus 92 ~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~-Gkir~iGvS~~~~~~l~~~~~~-~~~~~~vq 167 (331)
++-..-+.-...||....||..|..-.+... .+.+.+.|...++. |+ .-+.+.+..++.. ++.+++.|
T Consensus 11 ~LG~~W~~Lar~Lgls~~~I~~i~~~~p~~l-~eQv~~mL~~W~~r~G~-------~ATv~~L~~aL~~~~~~~~~~~ 80 (83)
T cd08319 11 RLGPEWEQVLLDLGLSQTDIYRCKENHPHNV-QSQIVEALVKWRQRFGK-------KATVQSLIQSLKAVEVDPSVLQ 80 (83)
T ss_pred HHhhhHHHHHHHcCCCHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhcCC-------CCcHHHHHHHHHHcCCCHHHHH
Confidence 3444556667889999999988866444443 57788999988875 54 5577888777763 45555444
No 191
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=28.82 E-value=1.2e+02 Score=28.68 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHhCCCceeEe-eccc
Q 020082 258 VSIPVVAVRYILDQPAVAGSM-IGVR 282 (331)
Q Consensus 258 ~s~aq~Al~~~l~~~~v~~~i-~G~~ 282 (331)
+.-+...-+|+-+||.|..|= ||-.
T Consensus 298 ~~NA~~vA~~L~~HpkV~~V~YpgL~ 323 (426)
T COG2873 298 CENALKVAEFLENHPKVAWVNYPGLA 323 (426)
T ss_pred HHhHHHHHHHHhcCCCeeeeecCCCC
Confidence 445666778999999885543 4444
No 192
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=28.63 E-value=4.9e+02 Score=24.47 Aligned_cols=86 Identities=19% Similarity=0.139 Sum_probs=51.5
Q ss_pred cEEEEecCCCCCchHHHHHHHHHHHHHcC-cccEEecCcccHHHHHHHHHc-CCCeeeeccccccccc-ChhhhHHHHHH
Q 020082 110 DMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDM-RPQQKMAELCQ 186 (331)
Q Consensus 110 Dl~~lH~~d~~~~~~~e~~~~l~~l~~~G-kir~iGvS~~~~~~l~~~~~~-~~~~~~vq~~~nl~~~-~~~~~~~~~~~ 186 (331)
|-+++..+.+. .+...+..+...| ++..+. .+.+.+++++.. ..+..++....|+.-. .+-+++.+.|+
T Consensus 93 D~Vlv~~~~y~-----~~~~~~~~~~~~g~~v~~~~---~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~ 164 (385)
T PRK08574 93 DRVVLPMEAYG-----TTLRLLKSLEKFGVKVVLAY---PSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAK 164 (385)
T ss_pred CEEEEcCCCch-----hHHHHHHHhhccCcEEEEEC---CCHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHH
Confidence 55556554432 2333344343344 333333 246777777754 4566667777776422 12357899999
Q ss_pred HhCCeEEEccccccccc
Q 020082 187 LTGVKLITYGTVMGGLL 203 (331)
Q Consensus 187 ~~gi~via~~~l~~G~L 203 (331)
++|+.++.=..++.|..
T Consensus 165 ~~gi~livD~t~a~~~~ 181 (385)
T PRK08574 165 ELGAILVVDNTFATPLL 181 (385)
T ss_pred HcCCEEEEECCCCcccc
Confidence 99999998888766644
No 193
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=28.52 E-value=5.4e+02 Score=24.77 Aligned_cols=44 Identities=14% Similarity=0.075 Sum_probs=29.8
Q ss_pred cceeeeccccCC--CCCCchhhHHHHHHHHHHHhhhcCCcc--EEECCC
Q 020082 5 ERDVADEWRVGP--YRPGRRRRCHASLRRCRSHHLRHGRSL--SFDFVD 49 (331)
Q Consensus 5 S~l~lGt~~~g~--~~~~~~~~~~~~l~~al~~~~~~GGin--~~DTA~ 49 (331)
.+|.||.-.+|. |...+.+++.+.-++.+..-+.+| .+ ++|++-
T Consensus 83 ~~iiLGGDHLGPn~Wq~lpa~eAM~~A~~li~ayV~AG-F~kIHLD~Sm 130 (426)
T PRK15458 83 EALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAG-FKKIHLDCSM 130 (426)
T ss_pred hhEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcC-CceEEecCCC
Confidence 478999999986 888877765544444444434443 55 789986
No 194
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=28.48 E-value=4.2e+02 Score=23.46 Aligned_cols=98 Identities=9% Similarity=0.001 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEE-ecCCCCCchHHHHHHHHHHHHHc-CcccEEecCcccHHHHHHHHHcC--CC
Q 020082 87 KMTSSIVRESIDVSRRRMDVPCLDMLQF-HWWDYSNPGYLDALNHLTDLKEE-GKIKTVALTNFDTERLRIILENG--IP 162 (331)
Q Consensus 87 ~~~~~~i~~~~~~SL~rLg~d~lDl~~l-H~~d~~~~~~~e~~~~l~~l~~~-Gkir~iGvS~~~~~~l~~~~~~~--~~ 162 (331)
.++.+...+-+ +.|.++|+++|++-+. ++++ -++.++.+.+. ..++..+++......++.+.+.+ .+
T Consensus 16 ~~~~~~k~~i~-~~L~~~Gv~~iEvg~~~~~~~--------~~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~~~ 86 (268)
T cd07940 16 SLTPEEKLEIA-RQLDELGVDVIEAGFPAASPG--------DFEAVKRIAREVLNAEICGLARAVKKDIDAAAEALKPAK 86 (268)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEEeCCCCCHH--------HHHHHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCCCC
Confidence 35666555544 4599999999998532 1221 23455555553 24777888876778888887755 12
Q ss_pred eeeecccccc--c------ccChh------hhHHHHHHHhCCeEE
Q 020082 163 VVSNQVQHSV--V------DMRPQ------QKMAELCQLTGVKLI 193 (331)
Q Consensus 163 ~~~vq~~~nl--~------~~~~~------~~~~~~~~~~gi~vi 193 (331)
++.+.+.+.+ . ++..+ .+.++++++.|+.+.
T Consensus 87 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 131 (268)
T cd07940 87 VDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE 131 (268)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 4444443322 1 11111 367888999997755
No 195
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=28.33 E-value=3.5e+02 Score=23.58 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=13.9
Q ss_pred hhHHHHHHHhCCeEEEc
Q 020082 179 QKMAELCQLTGVKLITY 195 (331)
Q Consensus 179 ~~~~~~~~~~gi~via~ 195 (331)
++.++.|++.|+.+|..
T Consensus 88 ~~~i~~a~~lga~~i~~ 104 (258)
T PRK09997 88 AAAIRYARALGNKKINC 104 (258)
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 57889999999987743
No 196
>PRK09248 putative hydrolase; Validated
Probab=28.31 E-value=4e+02 Score=23.17 Aligned_cols=88 Identities=15% Similarity=0.212 Sum_probs=44.9
Q ss_pred CCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCc-----ccHHH-HHHHHHcCCCeeeecccc---cccccC
Q 020082 106 VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-----FDTER-LRIILENGIPVVSNQVQH---SVVDMR 176 (331)
Q Consensus 106 ~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~-----~~~~~-l~~~~~~~~~~~~vq~~~---nl~~~~ 176 (331)
.||+ ++.+|..........+-.+.+.++.+.|.+--+|=-. ..... ++.+.+.|..+.++-... ..-...
T Consensus 94 ~D~v-i~svH~~~~~~~~~~~~~~~~i~~l~~g~~~vLAHP~~~~~~~~~~~~~~~~~~~g~~lEvN~~~l~~~~~g~~~ 172 (246)
T PRK09248 94 LDIV-IAGFHEPVFAPGDKETNTQALINAIKNGRVDIIGHPGNPKYPIDIEAVVKAAKEHNVALEINNSSFGHSRKGSED 172 (246)
T ss_pred CCEE-EEecccCccCCcCHHHHHHHHHHHHhcCCCCEEECcCCCCCcccHHHHHHHHHHhCCEEEEECCCCccCCCCCcC
Confidence 3555 5667865322111233444555555888887666432 12233 344445554343333221 000112
Q ss_pred hhhhHHHHHHHhCCeEEE
Q 020082 177 PQQKMAELCQLTGVKLIT 194 (331)
Q Consensus 177 ~~~~~~~~~~~~gi~via 194 (331)
+...++..+.+.|+.++.
T Consensus 173 ~~~~~~~~~~~~g~~~~~ 190 (246)
T PRK09248 173 NCRAIAALCKKAGVWVAL 190 (246)
T ss_pred hHHHHHHHHHHcCCeEEE
Confidence 446788999999987554
No 197
>PLN02775 Probable dihydrodipicolinate reductase
Probab=28.24 E-value=4e+02 Score=24.21 Aligned_cols=71 Identities=11% Similarity=-0.014 Sum_probs=49.3
Q ss_pred HHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCCeeeecccccc
Q 020082 97 IDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSV 172 (331)
Q Consensus 97 ~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl 172 (331)
+++.|..+..+|.|++.+..- .| +-+.+.++.+.+.|+---+|.+.++.+++.++.+...-+.++--+|++
T Consensus 68 l~~~l~~~~~~~~~~VvIDFT---~P--~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSi 138 (286)
T PLN02775 68 REAVLSSVKAEYPNLIVVDYT---LP--DAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGK 138 (286)
T ss_pred HHHHHHHhhccCCCEEEEECC---Ch--HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcCCccEEEECcccH
Confidence 445555554557887766543 33 457888999999999999999999999998877642124444445554
No 198
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=28.16 E-value=1.3e+02 Score=23.31 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=30.7
Q ss_pred EecC-cccHHHHHHHHH-----cCCCeeeecccccccccChhhhHHHHHHHhCCeEEEcccc
Q 020082 143 VALT-NFDTERLRIILE-----NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 198 (331)
Q Consensus 143 iGvS-~~~~~~l~~~~~-----~~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l 198 (331)
||+. +-+.+.+.+++. .++.+..+-.--++-....+..+++++++.|+.+..|++-
T Consensus 6 iGcrr~~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~A~~l~~~~~~~~~e 67 (121)
T PF01890_consen 6 IGCRRGAPAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLELAEELGIPLRFFSAE 67 (121)
T ss_dssp EEE-SS--HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHHHHHHCTSEEEEE-HH
T ss_pred eCcCCCCCHHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHHHHHHHHHhCCCeEEECHH
Confidence 4444 345566655553 2444444444444433445678999999999999999763
No 199
>PLN02509 cystathionine beta-lyase
Probab=28.14 E-value=3.8e+02 Score=26.13 Aligned_cols=56 Identities=13% Similarity=0.176 Sum_probs=39.8
Q ss_pred ccHHHHHHHHHcCCCeeeecccccccccCh-hhhHHHHHHHhCCeEEEccccccccc
Q 020082 148 FDTERLRIILENGIPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGGLL 203 (331)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~vq~~~nl~~~~~-~~~~~~~~~~~gi~via~~~l~~G~L 203 (331)
.+.+.+++++....+..++..+.|+.-... -+.+.+.|+++|+.++.=.+++.|.+
T Consensus 205 ~d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~ 261 (464)
T PLN02509 205 TNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVL 261 (464)
T ss_pred CCHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCcccccc
Confidence 346677666643445677777888753322 35789999999999999888877764
No 200
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=28.11 E-value=2.2e+02 Score=20.47 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=34.4
Q ss_pred HHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcC-cccEEecCcc-cHHHHHHHHHcC
Q 020082 101 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNF-DTERLRIILENG 160 (331)
Q Consensus 101 L~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~G-kir~iGvS~~-~~~~l~~~~~~~ 160 (331)
++.++...+|++++....+... ..++ ++.+++.+ .++-|-+++. +.....++.+.|
T Consensus 36 ~~~~~~~~~d~iiid~~~~~~~-~~~~---~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g 93 (112)
T PF00072_consen 36 LELLKKHPPDLIIIDLELPDGD-GLEL---LEQIRQINPSIPIIVVTDEDDSDEVQEALRAG 93 (112)
T ss_dssp HHHHHHSTESEEEEESSSSSSB-HHHH---HHHHHHHTTTSEEEEEESSTSHHHHHHHHHTT
T ss_pred HHHhcccCceEEEEEeeecccc-cccc---ccccccccccccEEEecCCCCHHHHHHHHHCC
Confidence 3333334599999987655444 3444 44555544 6777777754 556677777755
No 201
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=28.05 E-value=3.8e+02 Score=24.21 Aligned_cols=43 Identities=19% Similarity=0.297 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHhCCCceeEeecccCCcHhHHHHh
Q 020082 247 QTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDT 292 (331)
Q Consensus 247 ~~l~~ia~~~g~------s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~ 292 (331)
.+|.++|+++|. ++.++-..|+-.... ..+..|+|+ |+.+-+.
T Consensus 224 ~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~-VGiTAGAST--P~~li~e 272 (280)
T TIGR00216 224 TRLYEIAEEHGPPSYLIETAEELPEEWLKGVKV-VGITAGAST--PDWIIEE 272 (280)
T ss_pred HHHHHHHHHhCCCEEEECChHHCCHHHhCCCCE-EEEEecCCC--CHHHHHH
Confidence 789999999874 678999999987654 577899999 9876543
No 202
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=28.04 E-value=1.4e+02 Score=22.77 Aligned_cols=78 Identities=12% Similarity=0.034 Sum_probs=38.8
Q ss_pred ccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCc---ccHHHHHHHHHcCCCeeeecccccccccChhhhHHHHH
Q 020082 109 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---FDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELC 185 (331)
Q Consensus 109 lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~---~~~~~l~~~~~~~~~~~~vq~~~nl~~~~~~~~~~~~~ 185 (331)
.++|-+|--..... -..++..+.+ .-+.|..+=+.. ..++.++++.+.|++-.++|.. ..+.++++.|
T Consensus 28 ~~v~~Vnp~~~~i~-G~~~y~sl~e--~p~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g------~~~~~~~~~a 98 (116)
T PF13380_consen 28 YEVYPVNPKGGEIL-GIKCYPSLAE--IPEPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG------AESEELIEAA 98 (116)
T ss_dssp -EEEEESTTCSEET-TEE-BSSGGG--CSST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT------S--HHHHHHH
T ss_pred CEEEEECCCceEEC-cEEeeccccC--CCCCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc------hHHHHHHHHH
Confidence 46777764432211 1123334443 145555544443 3345566666666665555554 3346899999
Q ss_pred HHhCCeEEEc
Q 020082 186 QLTGVKLITY 195 (331)
Q Consensus 186 ~~~gi~via~ 195 (331)
+++|+.++.=
T Consensus 99 ~~~gi~vigp 108 (116)
T PF13380_consen 99 REAGIRVIGP 108 (116)
T ss_dssp HHTT-EEEES
T ss_pred HHcCCEEEeC
Confidence 9999999843
No 203
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.96 E-value=2.4e+02 Score=24.31 Aligned_cols=87 Identities=15% Similarity=0.163 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCc-ccHHHHHHHHHcCCCeeeec
Q 020082 89 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQ 167 (331)
Q Consensus 89 ~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~-~~~~~l~~~~~~~~~~~~vq 167 (331)
+++...+-++ .|..-|.+.+.+= + ..+ +.++.++.++++.-=..||..+ .+.++++.+.+.|-.|.+.-
T Consensus 25 ~~~~a~~i~~-al~~~Gi~~iEit---l---~~~---~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP 94 (212)
T PRK05718 25 KLEDAVPLAK-ALVAGGLPVLEVT---L---RTP---AALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSP 94 (212)
T ss_pred CHHHHHHHHH-HHHHcCCCEEEEe---c---CCc---cHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECC
Confidence 5665555444 4666776666664 1 222 3455555555543335688876 47789999998886554322
Q ss_pred ccccccccChhhhHHHHHHHhCCeEE
Q 020082 168 VQHSVVDMRPQQKMAELCQLTGVKLI 193 (331)
Q Consensus 168 ~~~nl~~~~~~~~~~~~~~~~gi~vi 193 (331)
....++++.|++.+|.++
T Consensus 95 --------~~~~~vi~~a~~~~i~~i 112 (212)
T PRK05718 95 --------GLTPPLLKAAQEGPIPLI 112 (212)
T ss_pred --------CCCHHHHHHHHHcCCCEe
Confidence 223489999999998887
No 204
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=27.82 E-value=4.8e+02 Score=24.70 Aligned_cols=57 Identities=11% Similarity=0.106 Sum_probs=39.3
Q ss_pred CcccHHHHHHHHHcCCCeeeecccccccccCh-hhhHHHHHHHhCCeEEEcccccccc
Q 020082 146 TNFDTERLRIILENGIPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGGL 202 (331)
Q Consensus 146 S~~~~~~l~~~~~~~~~~~~vq~~~nl~~~~~-~~~~~~~~~~~gi~via~~~l~~G~ 202 (331)
...+++.+++++....++.++..+.|+.-.-. -..+.+.|+++|+.++.=.+++.+.
T Consensus 135 d~~d~e~l~~~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~ 192 (398)
T PRK08249 135 ETGDHEQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPI 192 (398)
T ss_pred CCCCHHHHHHhcCCCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccc
Confidence 34567778777754456776667777743222 3578899999999998888776543
No 205
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=27.70 E-value=1.3e+02 Score=25.11 Aligned_cols=35 Identities=14% Similarity=0.158 Sum_probs=26.6
Q ss_pred ccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEe
Q 020082 109 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVA 144 (331)
Q Consensus 109 lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iG 144 (331)
-+|++++....... ..+-+..|.++..+|++|++-
T Consensus 78 n~l~lv~~~~rNp~-S~~hvq~l~~l~nqg~Lr~~n 112 (173)
T PF10171_consen 78 NDLLLVSPAIRNPT-SDKHVQRLMRLRNQGRLRYLN 112 (173)
T ss_pred CceeccChhhcCch-HHHHHHHHHHHhcCCceEEee
Confidence 56777775544333 578999999999999999863
No 206
>KOG1908 consensus Ribonuclease inhibitor type leucine-rich repeat proteins [RNA processing and modification]
Probab=27.70 E-value=2.5e+02 Score=22.19 Aligned_cols=64 Identities=16% Similarity=0.138 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeecccCCcHhHHHHhhchhcCCCCHHHHHHHHHHhhcCC
Q 020082 242 FQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGK 316 (331)
Q Consensus 242 ~~~~~~~l~~ia~~~g~s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~~~a~~~~L~~~~~~~l~~~~~~~~ 316 (331)
..+++.++++.|++.++-+....++-+-..- .. ++|-.+.+..-..+|+...++.|++++++..
T Consensus 77 s~Eii~AYkeACQk~nCap~aalekQig~Fh---------~~--~d~R~d~L~LKGEkl~haq~EALEEiFKRlQ 140 (165)
T KOG1908|consen 77 SDEIIGAYKEACQKLNCAPIAALEKQIGEFH---------DL--GDHRLDCLDLKGEKLDHAQCEALEEIFKRLQ 140 (165)
T ss_pred HHHHHHHHHHHHHHccccchHHHHHHHHHHh---------cC--cchhHHHHhcccccccHHHHHHHHHHHHHhh
Confidence 4577889999999999987665554433321 23 6666777776667999999999999998754
No 207
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=27.45 E-value=1.5e+02 Score=24.50 Aligned_cols=95 Identities=22% Similarity=0.272 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCCCcc----cEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHH-cCC--Ceee
Q 020082 93 VRESIDVSRRRMDVPCL----DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE-NGI--PVVS 165 (331)
Q Consensus 93 i~~~~~~SL~rLg~d~l----Dl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~-~~~--~~~~ 165 (331)
.++.++..++++|.+.- +.+.-.+.. ..+ ..++.+.|+.|++.| ++-.-+||.+...+...++ .++ .|+.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~-~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~ 137 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAYLR-LPP-HPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKHAGLDDPFDA 137 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-CCC-CCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHHCCChhhhhe
Confidence 35666777777776511 111111111 112 356788899999988 4455577777777766665 243 2333
Q ss_pred ecccccccccChhhhH-HHHHHHhCC
Q 020082 166 NQVQHSVVDMRPQQKM-AELCQLTGV 190 (331)
Q Consensus 166 vq~~~nl~~~~~~~~~-~~~~~~~gi 190 (331)
+-..-.+-.+.|..++ ...+++.|+
T Consensus 138 i~~s~~~~~~KP~~~~~~~~~~~~~~ 163 (198)
T TIGR01428 138 VLSADAVRAYKPAPQVYQLALEALGV 163 (198)
T ss_pred eEehhhcCCCCCCHHHHHHHHHHhCC
Confidence 3222122123443333 444555565
No 208
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=27.34 E-value=5.7e+02 Score=24.68 Aligned_cols=49 Identities=12% Similarity=0.180 Sum_probs=28.2
Q ss_pred ccHHHHHHHHHc---CCCe---eeecccccccccChhhhHHHHHHHhCCeEEEcccc
Q 020082 148 FDTERLRIILEN---GIPV---VSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 198 (331)
Q Consensus 148 ~~~~~l~~~~~~---~~~~---~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l 198 (331)
.+++++.++++. ..++ .-+.++.|+- ....+.++..++.|+.-+..+.-
T Consensus 116 l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~--~lt~e~l~~l~~aG~~risiGvq 170 (453)
T PRK09249 116 LSPEQLRRLMALLREHFNFAPDAEISIEIDPR--ELDLEMLDALRELGFNRLSLGVQ 170 (453)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCEEEEEecCC--cCCHHHHHHHHHcCCCEEEECCC
Confidence 356777766641 1121 1233344442 12457899999999888777654
No 209
>PRK08508 biotin synthase; Provisional
Probab=27.34 E-value=4.5e+02 Score=23.49 Aligned_cols=110 Identities=10% Similarity=0.058 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcC-cccEEecC-cccHHHHHHHHHcCCC---
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALT-NFDTERLRIILENGIP--- 162 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~G-kir~iGvS-~~~~~~l~~~~~~~~~--- 162 (331)
.+++.|.+.++...+ .|...+-++. -......+.++-+.+.++.+++++ .+.-+... ..+.++++++.+.|..
T Consensus 40 ~s~eeI~~~a~~a~~-~g~~~~~lv~-sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~ 117 (279)
T PRK08508 40 KDIEQIVQEAKMAKA-NGALGFCLVT-SGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYN 117 (279)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEEEe-ccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEc
Confidence 588888888887554 4665544421 111111223667788888888886 34322222 2367888888765421
Q ss_pred --eeeeccccccccc--Chh--hhHHHHHHHhCCeEEEccccc
Q 020082 163 --VVSNQVQHSVVDM--RPQ--QKMAELCQLTGVKLITYGTVM 199 (331)
Q Consensus 163 --~~~vq~~~nl~~~--~~~--~~~~~~~~~~gi~via~~~l~ 199 (331)
+.+..-.|.-... ..+ -+.++.+++.|+.+.+...++
T Consensus 118 ~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~G 160 (279)
T PRK08508 118 HNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFG 160 (279)
T ss_pred ccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEe
Confidence 1221111211111 111 246667888887665544443
No 210
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=27.25 E-value=4.8e+02 Score=24.04 Aligned_cols=97 Identities=10% Similarity=0.042 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCCeeeec
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQ 167 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~vq 167 (331)
++.+.+++.++...+.++---+.+. .|- .. ....+.++.+.+.| +..+++++ ..+++.+.+.|++. +.
T Consensus 12 id~~~l~~N~~~l~~~~~~~~~~l~-~~~---K~---h~~~~i~~~~~~~G-~~~~~vas--~~Ea~~~~~~G~~~--il 79 (358)
T cd06819 12 LDLDALERNIKRMAAFAKAHGVRLR-PHA---KT---HKCPAIARRQIAAG-AVGVCCQK--LSEAEVMAAAGIRD--IL 79 (358)
T ss_pred EEHHHHHHHHHHHHHHHHHcCCccc-ccc---hh---hcCHHHHHHHHhCC-CCcEEEcc--HHHHHHHHHCCCCe--EE
Confidence 5788898888888877742112222 221 11 12233344555566 44555554 56666666666432 33
Q ss_pred ccccccccChhhhHHHHHHHhCCeEEEcc
Q 020082 168 VQHSVVDMRPQQKMAELCQLTGVKLITYG 196 (331)
Q Consensus 168 ~~~nl~~~~~~~~~~~~~~~~gi~via~~ 196 (331)
+.|.+.......++++.+.+.++.+..-+
T Consensus 80 i~~~~~~~~~~~~~~~~~~~~~i~~~vDs 108 (358)
T cd06819 80 ITNEVVGPAKIARLAALARRAPLIVCVDH 108 (358)
T ss_pred EECCcCCHHHHHHHHHHhcCCCEEEEECC
Confidence 44433322223455666666665554443
No 211
>PRK09028 cystathionine beta-lyase; Provisional
Probab=27.19 E-value=5.5e+02 Score=24.39 Aligned_cols=89 Identities=16% Similarity=0.091 Sum_probs=53.0
Q ss_pred cEEEEecCCCCCchHHHHHHHHHH-HHHcCcccEEecCcccHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHH
Q 020082 110 DMLQFHWWDYSNPGYLDALNHLTD-LKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQL 187 (331)
Q Consensus 110 Dl~~lH~~d~~~~~~~e~~~~l~~-l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~-~~~~~~~~~~~~ 187 (331)
|-+.+..+.+ ..+...+.. ++.-| |....+..-..+.+++++....+..++..+-|+.-. ..-+++.+.|++
T Consensus 101 D~Vvv~~~~Y-----~~t~~l~~~~l~~~G-i~v~~v~~~~~e~l~~~l~~~TklV~lespsNPtg~v~dl~~I~~la~~ 174 (394)
T PRK09028 101 DHLLMVDSCY-----EPTRDLCDKILKGFG-IETTYYDPMIGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLSRIAHE 174 (394)
T ss_pred CEEEEECCCc-----HHHHHHHHHhhhhcc-eEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHH
Confidence 6666666543 222222322 23333 222223323446677776544567777777887532 223678999999
Q ss_pred hCCeEEEcccccccccc
Q 020082 188 TGVKLITYGTVMGGLLS 204 (331)
Q Consensus 188 ~gi~via~~~l~~G~L~ 204 (331)
+|+-++.=++++.+.+.
T Consensus 175 ~g~~lvvD~t~a~p~~~ 191 (394)
T PRK09028 175 HDIVVMLDNTWASPINS 191 (394)
T ss_pred cCCEEEEECCccccccC
Confidence 99999998888877543
No 212
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=27.12 E-value=1.3e+02 Score=23.20 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcC
Q 020082 94 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG 138 (331)
Q Consensus 94 ~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~G 138 (331)
+..+++.|+.+....+|.+++..++.-.....+....++.|...|
T Consensus 51 R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~g 95 (137)
T cd00338 51 RPGLQRLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAHG 95 (137)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHCC
Confidence 455555666665567888888888764443456777777776654
No 213
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=27.04 E-value=1.4e+02 Score=17.47 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHH
Q 020082 244 VLLQTLKRIASKHGVSIPVVA 264 (331)
Q Consensus 244 ~~~~~l~~ia~~~g~s~aq~A 264 (331)
+..+.+.++|++.|+|.+++.
T Consensus 9 ~~~~~l~~~a~~~g~s~s~~i 29 (39)
T PF01402_consen 9 ELYERLDELAKELGRSRSELI 29 (39)
T ss_dssp HHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHH
Confidence 445899999999999988754
No 214
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=26.79 E-value=3.6e+02 Score=22.18 Aligned_cols=60 Identities=17% Similarity=0.075 Sum_probs=36.3
Q ss_pred cccEEecCcccHHHHH------HHHHc--CCCeeeecccccccccC-------hh------hhHHHHHHHhCCeEEEccc
Q 020082 139 KIKTVALTNFDTERLR------IILEN--GIPVVSNQVQHSVVDMR-------PQ------QKMAELCQLTGVKLITYGT 197 (331)
Q Consensus 139 kir~iGvS~~~~~~l~------~~~~~--~~~~~~vq~~~nl~~~~-------~~------~~~~~~~~~~gi~via~~~ 197 (331)
.|...|++..+..++. .+... ...+.++++-.|=.... .+ ..+++.++++|..++..+|
T Consensus 36 ~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~tp 115 (198)
T cd01821 36 TVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVTP 115 (198)
T ss_pred EEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 5566777776655432 23332 23566666665543321 11 3688889999998888877
Q ss_pred c
Q 020082 198 V 198 (331)
Q Consensus 198 l 198 (331)
.
T Consensus 116 ~ 116 (198)
T cd01821 116 V 116 (198)
T ss_pred c
Confidence 5
No 215
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=26.75 E-value=92 Score=28.39 Aligned_cols=49 Identities=14% Similarity=-0.060 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHcCCCcc--cEEEEecCCCCCchHHHHHHHHHHHHHcCcccE
Q 020082 90 SSIVRESIDVSRRRMDVPCL--DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKT 142 (331)
Q Consensus 90 ~~~i~~~~~~SL~rLg~d~l--Dl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~ 142 (331)
.+...+.+.+.+++||+.+- ..+.=+.+ ...+.+.+.+.+|.++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~----~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISYDWSDEYITTEP----EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccccCCCCeECCCH----HHHHHHHHHHHHHHHCCCEEe
Confidence 56688888999999998632 23322332 225679999999999999844
No 216
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=26.63 E-value=4.2e+02 Score=22.89 Aligned_cols=117 Identities=18% Similarity=0.200 Sum_probs=51.5
Q ss_pred HHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHH----HHHHHH-cCCCeeeecccccccccC
Q 020082 102 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTER----LRIILE-NGIPVVSNQVQHSVVDMR 176 (331)
Q Consensus 102 ~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~----l~~~~~-~~~~~~~vq~~~nl~~~~ 176 (331)
+.||. .++.+..+.......++..++|.+++ |.++-+.....+. ++...+ .| +.+ +.++-..
T Consensus 55 ~algi---pl~~~~~~g~~~~~~~~l~~~l~~~~----v~~vv~GdI~~~~~r~~~e~vc~~lG--l~~----~~PLW~~ 121 (218)
T PF01902_consen 55 EALGI---PLIEIPTSGDEEDYVEDLKEALKELK----VEAVVFGDIDSEYQRNWVERVCERLG--LEA----VFPLWGR 121 (218)
T ss_dssp HHHT-----EEEEEE---CCCHHHHHHHHHCTC------SEEE--TTS-HHHHHHHHHHHHHCT---EE----E-TTTT-
T ss_pred HHCCC---CEEEEEccCccchhhHHHHHHHHHcC----CCEEEECcCCcHHHHHHHHHHHHHcC--CEE----EecccCC
Confidence 55674 45555544222232444444444333 7776665544332 333332 34 222 2333223
Q ss_pred hhhhHHHHHHHhCCeEEEccccccccccccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHc
Q 020082 177 PQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKH 256 (331)
Q Consensus 177 ~~~~~~~~~~~~gi~via~~~l~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~ 256 (331)
..++++...-+.|+..+.-++-+.|+ .. .|-+.....+.++.|.++.+++
T Consensus 122 d~~~ll~e~i~~Gf~aiIv~V~~~~L-~~-----------------------------~~LGr~l~~e~i~~L~~~~~~~ 171 (218)
T PF01902_consen 122 DREELLREFIESGFEAIIVKVDADGL-DE-----------------------------SFLGRELDRELIEELPELNKKY 171 (218)
T ss_dssp -HHHHHHHHHHTT-EEEEEEEESTT---G-----------------------------GGTT-B--HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCeEEEEEEeccCC-Ch-----------------------------HHCCCCccHHHHHHHHHHHhhc
Confidence 34578788888898777766655543 11 1122233446778899999999
Q ss_pred CCCHH
Q 020082 257 GVSIP 261 (331)
Q Consensus 257 g~s~a 261 (331)
|++|.
T Consensus 172 gvdp~ 176 (218)
T PF01902_consen 172 GVDPC 176 (218)
T ss_dssp ---TT
T ss_pred Ccccc
Confidence 98765
No 217
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=26.61 E-value=2.7e+02 Score=20.87 Aligned_cols=74 Identities=14% Similarity=0.003 Sum_probs=48.2
Q ss_pred CchhhHHHHHHHHHHHhhhcCCccEEECCCCchHHHHHHHHhhhhcCCCccchheeeecccccCCCCCCCHHHHHHHHHH
Q 020082 20 GRRRRCHASLRRCRSHHLRHGRSLSFDFVDGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDV 99 (331)
Q Consensus 20 ~~~~~~~~~l~~al~~~~~~GGin~~DTA~g~sE~~lG~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~ 99 (331)
.+.++..+.|+..|..|+..| +.|-|.. + +....+-..+. |.-...+++.+...+++
T Consensus 11 l~~~~i~~Qv~~ll~qG~~i~-iE~ad~r----------------~-----~r~~~W~mW~~-p~~~~~~~~~Vl~el~~ 67 (99)
T PF00101_consen 11 LTDEEIAKQVRYLLSQGWIIG-IEHADPR----------------R-----FRTSYWQMWKL-PMFGCTDPAQVLAELEA 67 (99)
T ss_dssp --HHHHHHHHHHHHHTT-EEE-EEEESCG----------------G-----STSSS-EEESS-EBTTBSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhhcCceee-EEecCCC----------------C-----CCCCEeecCCC-CCcCCCCHHHHHHHHHH
Confidence 456889999999999999886 6665521 1 11122222222 22223478999999999
Q ss_pred HHHHcCCCcccEEEEec
Q 020082 100 SRRRMDVPCLDMLQFHW 116 (331)
Q Consensus 100 SL~rLg~d~lDl~~lH~ 116 (331)
-++.---+||=|+=+..
T Consensus 68 c~~~~p~~yVRlig~D~ 84 (99)
T PF00101_consen 68 CLAEHPGEYVRLIGFDN 84 (99)
T ss_dssp HHHHSTTSEEEEEEEET
T ss_pred HHHhCCCceEEEEEEcC
Confidence 99999989998876654
No 218
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=26.51 E-value=4.5e+02 Score=24.69 Aligned_cols=56 Identities=9% Similarity=0.030 Sum_probs=35.7
Q ss_pred ccHHHHHHHHHcCCCeeeecccccccccC-hhhhHHHHHHHhCCeEEEccccccccc
Q 020082 148 FDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITYGTVMGGLL 203 (331)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~vq~~~nl~~~~-~~~~~~~~~~~~gi~via~~~l~~G~L 203 (331)
.+++.+++++....+..++..+-|+.-.. .-+++.+.|+++|+.++.=++.+.+.+
T Consensus 122 ~d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~ 178 (380)
T PRK06176 122 SDLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYY 178 (380)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCcccccc
Confidence 45677776665344555666666653222 235788889999988887777765543
No 219
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=26.36 E-value=3e+02 Score=25.48 Aligned_cols=87 Identities=20% Similarity=0.167 Sum_probs=56.3
Q ss_pred ccEEEEecCCCCCchHHHHHHHHHHHHHcCcc-cEEecCcccHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHH
Q 020082 109 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI-KTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 186 (331)
Q Consensus 109 lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gki-r~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~-~~~~~~~~~~~ 186 (331)
.++.++-.|-+ .+-++.+.++++.-.+ -..|=|.++.+.+..+++.+ .++++|+..+..-- .....+...|+
T Consensus 203 ~~i~~iEeP~~-----~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~-~~d~~~ik~~~~GGit~~~~i~~~A~ 276 (354)
T cd03317 203 YGLLMIEQPLA-----ADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELG-ACKIINIKPGRVGGLTEALKIHDLCQ 276 (354)
T ss_pred CCccEEECCCC-----hhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcC-CCCEEEecccccCCHHHHHHHHHHHH
Confidence 45555555432 2235667777665443 36667778999999998765 47778877654321 12357899999
Q ss_pred HhCCeEEEccccccc
Q 020082 187 LTGVKLITYGTVMGG 201 (331)
Q Consensus 187 ~~gi~via~~~l~~G 201 (331)
.+|+.++..+....|
T Consensus 277 ~~gi~~~~g~~~es~ 291 (354)
T cd03317 277 EHGIPVWCGGMLESG 291 (354)
T ss_pred HcCCcEEecCcccch
Confidence 999999876554443
No 220
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=26.22 E-value=4.9e+02 Score=23.53 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHhCCCceeEeecccCCcHhHHHHh
Q 020082 247 QTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDT 292 (331)
Q Consensus 247 ~~l~~ia~~~g~------s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~ 292 (331)
.+|.++|++.+. ++.++-..|+.... ...+..|+|+ |+.+-+.
T Consensus 225 ~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~-~VGitaGAST--P~~li~e 273 (281)
T PRK12360 225 QKLVKICEKNCPNTFHIETADELDLEMLKDYK-IIGITAGAST--PDWIIEE 273 (281)
T ss_pred HHHHHHHHHHCCCEEEECChHHCCHHHhCCCC-EEEEEccCCC--CHHHHHH
Confidence 688899998874 57888889998765 4577899999 9876444
No 221
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=26.14 E-value=6.3e+02 Score=24.75 Aligned_cols=52 Identities=12% Similarity=0.096 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecC
Q 020082 89 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT 146 (331)
Q Consensus 89 ~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS 146 (331)
-|+.+.+.+=+-..+-| +|++-+-.. -.. .+-...+++..++.|+.....+|
T Consensus 102 ypddvv~~fv~~a~~~G---idi~Rifd~--lnd-~~n~~~ai~~ak~~G~~~~~~i~ 153 (468)
T PRK12581 102 YADDIVDKFISLSAQNG---IDVFRIFDA--LND-PRNIQQALRAVKKTGKEAQLCIA 153 (468)
T ss_pred CcchHHHHHHHHHHHCC---CCEEEEccc--CCC-HHHHHHHHHHHHHcCCEEEEEEE
Confidence 35555555533344445 555544332 222 56677888899999998554444
No 222
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.13 E-value=5e+02 Score=24.28 Aligned_cols=78 Identities=18% Similarity=0.078 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHc-Cc---ccEEecC--cccHHHHHHHHH--cCCCeeeecccccccccC-----hh---hhHHHHHHH
Q 020082 124 YLDALNHLTDLKEE-GK---IKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSVVDMR-----PQ---QKMAELCQL 187 (331)
Q Consensus 124 ~~e~~~~l~~l~~~-Gk---ir~iGvS--~~~~~~l~~~~~--~~~~~~~vq~~~nl~~~~-----~~---~~~~~~~~~ 187 (331)
++++++++.++.+. |+ +-|+=+. |-+++.+.++.+ .+.++.++-++||+.... .. ..+.+..++
T Consensus 225 l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L~~ 304 (344)
T PRK14464 225 PEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYLHR 304 (344)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHHHH
Confidence 77888888776544 32 1233222 557777777765 256788899999986421 11 256777888
Q ss_pred hCCeEEEccccccc
Q 020082 188 TGVKLITYGTVMGG 201 (331)
Q Consensus 188 ~gi~via~~~l~~G 201 (331)
+||.+..+...+.-
T Consensus 305 ~gi~~tiR~~~G~d 318 (344)
T PRK14464 305 RGVLTKVRNSAGQD 318 (344)
T ss_pred CCceEEEECCCCCc
Confidence 99999999887653
No 223
>PHA01976 helix-turn-helix protein
Probab=26.10 E-value=36 Score=22.86 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=13.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 020082 247 QTLKRIASKHGVSIPVVAVRY 267 (331)
Q Consensus 247 ~~l~~ia~~~g~s~aq~Al~~ 267 (331)
..++.+..+.|+|..++|-..
T Consensus 5 ~rl~~~R~~~glt~~~lA~~~ 25 (67)
T PHA01976 5 IQLIKARNARAWSAPELSRRA 25 (67)
T ss_pred HHHHHHHHHcCCCHHHHHHHh
Confidence 456666666777766666553
No 224
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=25.64 E-value=4.5e+02 Score=22.91 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=18.3
Q ss_pred CCCchhhHHHHHHHHHHHhhhcCCcc-EEECCC
Q 020082 18 RPGRRRRCHASLRRCRSHHLRHGRSL-SFDFVD 49 (331)
Q Consensus 18 ~~~~~~~~~~~l~~al~~~~~~GGin-~~DTA~ 49 (331)
|+.+.+++.++++.|.++ | |+ .+-|+.
T Consensus 15 Gp~s~eesl~ml~~A~~q----G-vt~iVaTsH 42 (254)
T COG4464 15 GPKSLEESLAMLREAVRQ----G-VTKIVATSH 42 (254)
T ss_pred CCCcHHHHHHHHHHHHHc----C-ceEEeeccc
Confidence 456788899999999555 4 65 445554
No 225
>PRK13796 GTPase YqeH; Provisional
Probab=25.54 E-value=5.6e+02 Score=23.97 Aligned_cols=124 Identities=14% Similarity=0.078 Sum_probs=71.6
Q ss_pred chhhHHHHHHHHHHHhhhcCCccEEECCC--CchHHHHHHHHhhhhcCCCccchheeeecccccCCCCCCCHHHHHHHHH
Q 020082 21 RRRRCHASLRRCRSHHLRHGRSLSFDFVD--GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 98 (331)
Q Consensus 21 ~~~~~~~~l~~al~~~~~~GGin~~DTA~--g~sE~~lG~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~ 98 (331)
+.++..+++++.-+. -..= +-.+|..+ +.-...+.+... ... .+.+.+|.+-.+.....+.+.+-++
T Consensus 55 ~~~~~~~~l~~i~~~-~~lI-v~VVD~~D~~~s~~~~L~~~~~----~kp-----viLViNK~DLl~~~~~~~~i~~~l~ 123 (365)
T PRK13796 55 TDDDFLKLLNGIGDS-DALV-VNVVDIFDFNGSWIPGLHRFVG----NNP-----VLLVGNKADLLPKSVKKNKVKNWLR 123 (365)
T ss_pred CHHHHHHHHHhhccc-CcEE-EEEEECccCCCchhHHHHHHhC----CCC-----EEEEEEchhhCCCccCHHHHHHHHH
Confidence 444455555555322 1111 45678665 332333333332 111 2334555542222234566766667
Q ss_pred HHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHH
Q 020082 99 VSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 157 (331)
Q Consensus 99 ~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~ 157 (331)
...+.+|....|++++-.... . .++++++.+.++.+.+.+--+|.+|.....+--.+
T Consensus 124 ~~~k~~g~~~~~v~~vSAk~g-~-gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L 180 (365)
T PRK13796 124 QEAKELGLRPVDVVLISAQKG-H-GIDELLEAIEKYREGRDVYVVGVTNVGKSTLINRI 180 (365)
T ss_pred HHHHhcCCCcCcEEEEECCCC-C-CHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHH
Confidence 667777865557777765432 2 26889999988888888999999999887765444
No 226
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=25.44 E-value=2.5e+02 Score=26.70 Aligned_cols=68 Identities=18% Similarity=0.128 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCc--c-cEEecCcccHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEEc
Q 020082 127 ALNHLTDLKEEGK--I-KTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITY 195 (331)
Q Consensus 127 ~~~~l~~l~~~Gk--i-r~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~-~~~~~~~~~~~~~gi~via~ 195 (331)
-++.+.+|++.-. | -.-|=+.++...++.+++.+ .++++|....-.-- .....+...|+.+|+.++.+
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~-a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMG-CIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcC-CCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 4667777877654 2 23367778889999888864 58888887664311 12357899999999998776
No 227
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=25.30 E-value=5.5e+02 Score=23.81 Aligned_cols=111 Identities=13% Similarity=0.072 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcC-cccEEecC-----------cc-cHHHH
Q 020082 87 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALT-----------NF-DTERL 153 (331)
Q Consensus 87 ~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~G-kir~iGvS-----------~~-~~~~l 153 (331)
..+++.|.+.++. .+..|...+.+..-+.|+ .+ .+...+.++.++++. .+.-..++ .. +.+.+
T Consensus 78 ~l~~eeI~~~a~~-~~~~G~~~v~l~~G~~p~--~~-~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l 153 (351)
T TIGR03700 78 AMSLEEIVARVKE-AYAPGATEVHIVGGLHPN--LP-FEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVL 153 (351)
T ss_pred CCCHHHHHHHHHH-HHHCCCcEEEEecCCCCC--CC-HHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHH
Confidence 4688999998875 466899888887666664 23 567788888888875 24333222 12 34557
Q ss_pred HHHHHcCCC-ee--eeccc----cccccc---Chhh--hHHHHHHHhCCeEEEccccccc
Q 020082 154 RIILENGIP-VV--SNQVQ----HSVVDM---RPQQ--KMAELCQLTGVKLITYGTVMGG 201 (331)
Q Consensus 154 ~~~~~~~~~-~~--~vq~~----~nl~~~---~~~~--~~~~~~~~~gi~via~~~l~~G 201 (331)
+++.+.|.. +- ...+- +.-+.. ..++ +.++.+++.|+.+.+.-.++-|
T Consensus 154 ~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~Glg 213 (351)
T TIGR03700 154 DELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGHI 213 (351)
T ss_pred HHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeCC
Confidence 777765532 11 11110 111111 1222 6889999999988766655444
No 228
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=25.28 E-value=2.1e+02 Score=23.82 Aligned_cols=83 Identities=12% Similarity=0.041 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhhcCCccEEECCCCchHHHHHHHHhhhhcCCCccchheeeecccccCC---CCCCCHHHHHHHHHHHHHH
Q 020082 27 ASLRRCRSHHLRHGRSLSFDFVDGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPP---PVKMTSSIVRESIDVSRRR 103 (331)
Q Consensus 27 ~~l~~al~~~~~~GGin~~DTA~g~sE~~lG~~l~~~~~~~~~~~~~~~~~~~k~~~~---~~~~~~~~i~~~~~~SL~r 103 (331)
.+++..++.-+..| .+| .|.+|. +. .+..|+. + + .+++.+.+....... ......+.+...++..++-
T Consensus 95 a~lK~~iD~v~~~g-~~~-~~~~g~-~~-~~~~L~g--K-k--~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 165 (199)
T PF02525_consen 95 AQLKGWIDRVFTPG-FTF-YTPDGK-YP-SGGLLKG--K-K--ALLIVTSGGPEYSYGPPGIPGRSMDHLLPYLRGILKF 165 (199)
T ss_dssp HHHHHHHHHHSHTT-TSE-EETTST-TC-GEESTTT--S-E--EEEEEEESSSGGGGSTTSSTTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhCcCC-eee-eccccc-cc-ccccccc--c-c--EEEEEcCCCChHHhcccCCCCCChhhhHHHHHHHHHh
Confidence 58888888878886 888 766542 10 0111221 1 1 344444444322111 1223567788889999999
Q ss_pred cCCCcccEEEEecCC
Q 020082 104 MDVPCLDMLQFHWWD 118 (331)
Q Consensus 104 Lg~d~lDl~~lH~~d 118 (331)
+|.+.++.+.++..+
T Consensus 166 ~G~~~~~~~~~~~~~ 180 (199)
T PF02525_consen 166 CGIKDVESFSFEGVD 180 (199)
T ss_dssp TTEEEEEEEEEESTT
T ss_pred CCCceeeEEEEeCCC
Confidence 999999999999876
No 229
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=25.26 E-value=5.8e+02 Score=24.05 Aligned_cols=70 Identities=16% Similarity=0.156 Sum_probs=47.6
Q ss_pred HHHHHHHHHHc------CcccEEecCcccHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEEccc
Q 020082 127 ALNHLTDLKEE------GKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGT 197 (331)
Q Consensus 127 ~~~~l~~l~~~------Gkir~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~-~~~~~~~~~~~~~gi~via~~~ 197 (331)
-++.+.+|.+. +.=-..|=|.++.+.++++++.+ -++++|+..+-.-- .....+.+.|..+||.++..+.
T Consensus 244 ~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~-a~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~ 320 (369)
T cd03314 244 QIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAG-AAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGS 320 (369)
T ss_pred hHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhC-CCCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCC
Confidence 35666666655 33345566667888888888754 47778877664311 1235789999999999998754
No 230
>PRK11024 colicin uptake protein TolR; Provisional
Probab=25.00 E-value=2e+02 Score=22.76 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecC
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT 146 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS 146 (331)
.+.+.+...+...++. .-|...+=..|...+ ++.+.+.|+.+++.| +..+++.
T Consensus 85 v~~~~L~~~l~~~~~~----~~~~~V~i~aD~~~~-~~~vv~vmd~~k~aG-~~~v~l~ 137 (141)
T PRK11024 85 LPEEQVVAEAKSRFKA----NPKTVFLIGGAKDVP-YDEIIKALNLLHSAG-VKSVGLM 137 (141)
T ss_pred cCHHHHHHHHHHHHhh----CCCceEEEEcCCCCC-HHHHHHHHHHHHHcC-CCeEEEE
Confidence 3555555555554432 234444445566677 789999999999998 4456654
No 231
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=24.96 E-value=3.7e+02 Score=24.27 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=18.0
Q ss_pred HHHHHHcCcccEEecCcccHHHHHHHHH
Q 020082 131 LTDLKEEGKIKTVALTNFDTERLRIILE 158 (331)
Q Consensus 131 l~~l~~~Gkir~iGvS~~~~~~l~~~~~ 158 (331)
..++.+.| +..|=+-|++++++.++++
T Consensus 201 a~ea~~~G-aDiI~lDn~~~e~l~~~v~ 227 (277)
T TIGR01334 201 ALTVLQAS-PDILQLDKFTPQQLHHLHE 227 (277)
T ss_pred HHHHHHcC-cCEEEECCCCHHHHHHHHH
Confidence 33444455 6777777888888777775
No 232
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=24.94 E-value=2.4e+02 Score=25.26 Aligned_cols=64 Identities=16% Similarity=0.076 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCCeeeecccccccccChhhhHHHHHHHh--CCeEEEc
Q 020082 128 LNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLT--GVKLITY 195 (331)
Q Consensus 128 ~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~~~~~~~~~~~~~~--gi~via~ 195 (331)
.++++++++...-+.||++.++.+++.++++.+ .+++++. |+ ....-+++++.+++. .+.+++.
T Consensus 171 ~~av~~~R~~~~~~~IgVev~t~eea~~A~~~g--aD~I~ld-~~-~p~~l~~~~~~~~~~~~~i~i~As 236 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVDSLEEALAAAEAG--ADILQLD-KF-SPEELAELVPKLRSLAPPVLLAAA 236 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHcC--CCEEEEC-CC-CHHHHHHHHHHHhccCCCceEEEE
Confidence 455555554433346999999999999888755 4555553 22 112223455555543 3555443
No 233
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=24.88 E-value=4.7e+02 Score=22.88 Aligned_cols=36 Identities=17% Similarity=0.319 Sum_probs=22.2
Q ss_pred HcCCCeeeecccc--cccccChhhhHHHHHHHhCCeEE
Q 020082 158 ENGIPVVSNQVQH--SVVDMRPQQKMAELCQLTGVKLI 193 (331)
Q Consensus 158 ~~~~~~~~vq~~~--nl~~~~~~~~~~~~~~~~gi~vi 193 (331)
+.+..+.+|-..+ .+-...|...+++.|++.|+.++
T Consensus 196 ~~g~~lEiNt~g~r~~~~~~yP~~~il~~~~~~g~~it 233 (253)
T TIGR01856 196 SQGKALEFNTSGLRKPLEEAYPSKELLNLAKELGIPLV 233 (253)
T ss_pred HcCCEEEEEcHhhcCCCCCCCCCHHHHHHHHHcCCCEE
Confidence 4565566665432 22233455679999999998754
No 234
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=24.79 E-value=4.3e+02 Score=28.01 Aligned_cols=95 Identities=13% Similarity=0.104 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHc--CcccEEecCcccHHHHHHHHHcCCCeeee
Q 020082 89 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE--GKIKTVALTNFDTERLRIILENGIPVVSN 166 (331)
Q Consensus 89 ~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~--Gkir~iGvS~~~~~~l~~~~~~~~~~~~v 166 (331)
.-+.||+-.+.....--....-+|+|+..+.-+ .+..++|.+..++ ..+..|-+++. .+.|...+... + .
T Consensus 101 ~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt---~~a~NaLLK~LEEpP~~~~fIl~tt~-~~kLl~TIrSR--c--~ 172 (824)
T PRK07764 101 GVDDARELRERAFFAPAESRYKIFIIDEAHMVT---PQGFNALLKIVEEPPEHLKFIFATTE-PDKVIGTIRSR--T--H 172 (824)
T ss_pred CHHHHHHHHHHHHhchhcCCceEEEEechhhcC---HHHHHHHHHHHhCCCCCeEEEEEeCC-hhhhhHHHHhh--e--e
Confidence 466677654443322223456788898877543 4678888888887 88889988853 34444433321 1 2
Q ss_pred cccccccccCh-hhhHHHHHHHhCCe
Q 020082 167 QVQHSVVDMRP-QQKMAELCQLTGVK 191 (331)
Q Consensus 167 q~~~nl~~~~~-~~~~~~~~~~~gi~ 191 (331)
.+.|..+.... .+-+...|++.||.
T Consensus 173 ~v~F~~l~~~~l~~~L~~il~~EGv~ 198 (824)
T PRK07764 173 HYPFRLVPPEVMRGYLERICAQEGVP 198 (824)
T ss_pred EEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 34455543221 12344556666764
No 235
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=24.72 E-value=18 Score=23.99 Aligned_cols=13 Identities=0% Similarity=0.064 Sum_probs=7.3
Q ss_pred HhHHHHhhchhcC
Q 020082 286 AEHIQDTNAIFML 298 (331)
Q Consensus 286 ~~~l~e~~~a~~~ 298 (331)
.++|...+.+++.
T Consensus 40 ~~~l~~ia~~l~~ 52 (63)
T PF13443_consen 40 LDTLEKIAKALNC 52 (63)
T ss_dssp HHHHHHHHHHHT-
T ss_pred HHHHHHHHHHcCC
Confidence 5666666666544
No 236
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=24.68 E-value=3.3e+02 Score=25.88 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=38.0
Q ss_pred ccHHHHHHHHHcCCCeeeecccccccccCh-hhhHHHHHHHhCCeEEEccccccccc
Q 020082 148 FDTERLRIILENGIPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGGLL 203 (331)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~vq~~~nl~~~~~-~~~~~~~~~~~gi~via~~~l~~G~L 203 (331)
.+.+++++++....+..++..+.|+.-.-. -..+.+.|+++|+.++.=..++.+.+
T Consensus 143 ~d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~ 199 (403)
T PRK07810 143 EDLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLL 199 (403)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCcccc
Confidence 466777777654455666777777754322 35788889999999887666665544
No 237
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=24.64 E-value=5.8e+02 Score=23.82 Aligned_cols=17 Identities=12% Similarity=-0.013 Sum_probs=11.2
Q ss_pred CCeEEEccccccccccc
Q 020082 189 GVKLITYGTVMGGLLSE 205 (331)
Q Consensus 189 gi~via~~~l~~G~L~g 205 (331)
+..+++.+|=|.|.+.+
T Consensus 262 ~~~~lg~G~gA~s~~~~ 278 (375)
T PRK05628 262 GGDWWGAGPGAHSHVGG 278 (375)
T ss_pred CCCEEEEccCcccccCC
Confidence 45677777777776643
No 238
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=24.40 E-value=3.9e+02 Score=24.29 Aligned_cols=73 Identities=7% Similarity=0.097 Sum_probs=45.6
Q ss_pred HHHHHHHHcCcc-cEEecCcccHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEEcccccccc
Q 020082 129 NHLTDLKEEGKI-KTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGGL 202 (331)
Q Consensus 129 ~~l~~l~~~Gki-r~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~-~~~~~~~~~~~~~gi~via~~~l~~G~ 202 (331)
+.+..+.++-.+ -..|=|.++.+.+.++++.+ .++++|+.....-. .....+.+.|+.+|+.++..+.+..|+
T Consensus 196 ~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~-~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 196 DEMSAFSEATGTAIALDESLWELPQLADEYGPG-WRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcC-CCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHH
Confidence 445555554332 24455556777777777644 35666666554211 123578999999999999887776664
No 239
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=24.19 E-value=6.4e+02 Score=24.16 Aligned_cols=48 Identities=17% Similarity=0.287 Sum_probs=27.9
Q ss_pred cHHHHHHHHH---cCCCe----eeecccccccccChhhhHHHHHHHhCCeEEEcccc
Q 020082 149 DTERLRIILE---NGIPV----VSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 198 (331)
Q Consensus 149 ~~~~l~~~~~---~~~~~----~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l 198 (331)
+++++.++++ ...++ .-+.++.|+-. ...+.++.+++.|+.-+..+.-
T Consensus 106 ~~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~--lt~e~l~~l~~~G~~rvslGvQ 160 (430)
T PRK08208 106 NAAELEKLFDSVERVLGVDLGNIPKSVETSPAT--TTAEKLALLAARGVNRLSIGVQ 160 (430)
T ss_pred CHHHHHHHHHHHHHhCCCCCCCceEEEEeCcCc--CCHHHHHHHHHcCCCEEEEecc
Confidence 5566666554 11121 12344455422 2457899999999887777654
No 240
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=24.18 E-value=1.1e+02 Score=28.26 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=25.3
Q ss_pred HHHHHHcCCCeeeecccccccccCh----------hhhHHHHHHHhCCeEEEc-cccccc
Q 020082 153 LRIILENGIPVVSNQVQHSVVDMRP----------QQKMAELCQLTGVKLITY-GTVMGG 201 (331)
Q Consensus 153 l~~~~~~~~~~~~vq~~~nl~~~~~----------~~~~~~~~~~~gi~via~-~~l~~G 201 (331)
+.++.+.|...+...+.+|+-+..+ -...++.|+++|+-||.+ .|...+
T Consensus 30 l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~a 89 (319)
T PF01301_consen 30 LQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICA 89 (319)
T ss_dssp HHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES---T
T ss_pred HHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccceecc
Confidence 3333333444555555555543221 247899999999998887 666543
No 241
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=24.06 E-value=3.1e+02 Score=24.83 Aligned_cols=44 Identities=18% Similarity=0.281 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHhCCCceeEeecccCCcHhHHHHhh
Q 020082 247 QTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTN 293 (331)
Q Consensus 247 ~~l~~ia~~~g~------s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~~ 293 (331)
.+|.++|++++. ++.++-..|+-... ...+..|+|+ |+.+-+.+
T Consensus 225 ~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~-~VGItaGAST--P~~ii~eV 274 (281)
T PF02401_consen 225 RKLAEIAKEHGKPTYHIETADELDPEWLKGVK-KVGITAGAST--PDWIIEEV 274 (281)
T ss_dssp HHHHHHHHHCTTCEEEESSGGG--HHHHTT-S-EEEEEE-TTS---HHHHHHH
T ss_pred HHHHHHHHHhCCCEEEeCCccccCHhHhCCCC-EEEEEccCCC--CHHHHHHH
Confidence 789999999874 68899999998876 4578899999 98875544
No 242
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=24.06 E-value=2.4e+02 Score=22.37 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCc
Q 020082 87 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN 147 (331)
Q Consensus 87 ~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~ 147 (331)
..+.+.+...+++.++. .-+.-.+=..|...+ ++.+.+.|..+++.| +..+|+.+
T Consensus 80 ~v~~~~L~~~L~~~~~~----~~~~~V~I~aD~~~~-~~~vv~vmd~l~~aG-~~~v~l~t 134 (141)
T PRK11267 80 PVTDETMITALDALTEG----KKDTTIFFRADKTVD-YETLMKVMDTLHQAG-YLKIGLVG 134 (141)
T ss_pred cccHHHHHHHHHHHHhc----CCCceEEEEcCCCCC-HHHHHHHHHHHHHcC-CCeEEEEe
Confidence 34566666666554432 223333334456666 789999999999999 55677765
No 243
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=23.54 E-value=5.6e+02 Score=23.21 Aligned_cols=23 Identities=13% Similarity=-0.166 Sum_probs=13.8
Q ss_pred ceeEeecccCCcHhHHHHhhchh
Q 020082 274 VAGSMIGVRLGLAEHIQDTNAIF 296 (331)
Q Consensus 274 v~~~i~G~~~~~~~~l~e~~~a~ 296 (331)
+..++=|.|....++++..++..
T Consensus 200 vPLVlHGgSG~~~e~~~~ai~~G 222 (283)
T PRK07998 200 VPLVIHGGSGIPPEILRSFVNYK 222 (283)
T ss_pred CCEEEeCCCCCCHHHHHHHHHcC
Confidence 44456666655567777666554
No 244
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=23.54 E-value=6.8e+02 Score=24.20 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEE
Q 020082 89 TSSIVRESIDVSRRRMDVPCLDMLQF 114 (331)
Q Consensus 89 ~~~~i~~~~~~SL~rLg~d~lDl~~l 114 (331)
+.+.+.+.++..+ +|+.+++.+|.+
T Consensus 217 t~e~~~~tl~~~~-~l~p~~i~~y~l 241 (453)
T PRK13347 217 TVESFRETLDKVI-ALSPDRIAVFGY 241 (453)
T ss_pred CHHHHHHHHHHHH-hcCCCEEEEecc
Confidence 4555555554433 355555555433
No 245
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=23.44 E-value=6.8e+02 Score=24.19 Aligned_cols=58 Identities=7% Similarity=0.184 Sum_probs=33.3
Q ss_pred cccEEecCc-----ccHHHHHHHHHc---CCCe---eeecccccccccChhhhHHHHHHHhCCeEEEcccc
Q 020082 139 KIKTVALTN-----FDTERLRIILEN---GIPV---VSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 198 (331)
Q Consensus 139 kir~iGvS~-----~~~~~l~~~~~~---~~~~---~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l 198 (331)
.|..|-+.. .++.++.++++. ..++ .-+-++.|+- ....+.++.+++.|+.-+..++-
T Consensus 103 ~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~tie~~p~--~lt~e~l~~L~~~G~~rvsiGvQ 171 (453)
T PRK13347 103 RVSQLHWGGGTPTILNPDQFERLMAALRDAFDFAPEAEIAVEIDPR--TVTAEMLQALAALGFNRASFGVQ 171 (453)
T ss_pred eEEEEEEcCcccccCCHHHHHHHHHHHHHhCCCCCCceEEEEeccc--cCCHHHHHHHHHcCCCEEEECCC
Confidence 455554432 456777777741 1111 1222334442 22468999999999988877764
No 246
>PRK07671 cystathionine beta-lyase; Provisional
Probab=23.37 E-value=3.8e+02 Score=25.15 Aligned_cols=53 Identities=11% Similarity=0.123 Sum_probs=30.8
Q ss_pred cHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEEccccccc
Q 020082 149 DTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 201 (331)
Q Consensus 149 ~~~~l~~~~~~~~~~~~vq~~~nl~~~-~~~~~~~~~~~~~gi~via~~~l~~G 201 (331)
+.+.+++++....+..++..+-|+.-. ..-+++.+.|+++|+.++.=..++.+
T Consensus 123 d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~ 176 (377)
T PRK07671 123 NLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTP 176 (377)
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 556666655433455566666665321 12246777777777777766665543
No 247
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.21 E-value=4.6e+02 Score=24.72 Aligned_cols=78 Identities=10% Similarity=0.054 Sum_probs=51.6
Q ss_pred HHHHHHHHHH-HHHcC---cccEEecC--cccHHHHHHHHHc--CCCeeeecccccccccCh--------hhhHHHHHHH
Q 020082 124 YLDALNHLTD-LKEEG---KIKTVALT--NFDTERLRIILEN--GIPVVSNQVQHSVVDMRP--------QQKMAELCQL 187 (331)
Q Consensus 124 ~~e~~~~l~~-l~~~G---kir~iGvS--~~~~~~l~~~~~~--~~~~~~vq~~~nl~~~~~--------~~~~~~~~~~ 187 (331)
++++++++.+ +.+.| +|+++=+. |.+.+.+.++++. +.++.++-++||.+.... -..+.+..++
T Consensus 261 l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~L~~ 340 (368)
T PRK14456 261 LDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIVNIKFEPVCSSTRERFRDRLLD 340 (368)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCCCCCCCCCCHHHHHHHHHHHHH
Confidence 7888998875 55556 34455444 3455556655542 455677888899875321 1357777889
Q ss_pred hCCeEEEccccccc
Q 020082 188 TGVKLITYGTVMGG 201 (331)
Q Consensus 188 ~gi~via~~~l~~G 201 (331)
+|+.+......+.-
T Consensus 341 ~Gi~vtvR~~~G~d 354 (368)
T PRK14456 341 AGLQVTVRKSYGTT 354 (368)
T ss_pred CCCcEEeeCCCCcc
Confidence 99999999887653
No 248
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=23.07 E-value=2.9e+02 Score=19.71 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=36.6
Q ss_pred HHHHHHcCcccEEecCcccHHHHHHHHHcC-CCeeeecccccccccChhhhHHHHHHHhCCeEEEcc
Q 020082 131 LTDLKEEGKIKTVALTNFDTERLRIILENG-IPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 196 (331)
Q Consensus 131 l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~-~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~ 196 (331)
++++++.||+. ....+..++++.+ ....++-...+. ..-+.+...|++++|+++-+.
T Consensus 3 ~~~~~ragkl~------~G~~~v~kai~~gkaklViiA~D~~~---~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSIV------IGTKQTVKALKRGSVKEVVVAEDADP---RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCEE------EcHHHHHHHHHcCCeeEEEEECCCCH---HHHHHHHHHHHHcCCCEEEEC
Confidence 56777888753 2556677777654 345544444433 123578889999999997665
No 249
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=22.99 E-value=3.3e+02 Score=20.39 Aligned_cols=83 Identities=11% Similarity=0.011 Sum_probs=53.0
Q ss_pred eeccccCCCCCCchhhHHHHHHHHHHHhhhcCCccEEECCCCchHHHHHHHHhhhhcCCCccchheeeecccccCCCCCC
Q 020082 9 ADEWRVGPYRPGRRRRCHASLRRCRSHHLRHGRSLSFDFVDGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKM 88 (331)
Q Consensus 9 lGt~~~g~~~~~~~~~~~~~l~~al~~~~~~GGin~~DTA~g~sE~~lG~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 88 (331)
+||.++=. ..++++..+.|+.+|.+|+..| +-|=|.. . .+ ...+-..|. |.-...
T Consensus 3 ~~t~sylp--~lt~~~i~~QI~yll~qG~~~~-lE~ad~~--~------------~~-------~~yW~mwkl-P~f~~~ 57 (99)
T cd03527 3 FETFSYLP--PLTDEQIAKQIDYIISNGWAPC-LEFTEPE--H------------YD-------NRYWTMWKL-PMFGCT 57 (99)
T ss_pred ccccccCC--CCCHHHHHHHHHHHHhCCCEEE-EEcccCC--C------------CC-------CCEEeeccC-CCCCCC
Confidence 45655422 3567888999999999988886 4443321 1 11 133333222 222234
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEEec
Q 020082 89 TSSIVRESIDVSRRRMDVPCLDMLQFHW 116 (331)
Q Consensus 89 ~~~~i~~~~~~SL~rLg~d~lDl~~lH~ 116 (331)
++..+...|++-++.--..||=|+=+..
T Consensus 58 d~~~Vl~ei~~C~~~~p~~YVRliG~D~ 85 (99)
T cd03527 58 DPAQVLREIEACRKAYPDHYVRVVGFDN 85 (99)
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEEEEeC
Confidence 7899999999999998888887765543
No 250
>PRK15063 isocitrate lyase; Provisional
Probab=22.89 E-value=6.1e+02 Score=24.50 Aligned_cols=113 Identities=11% Similarity=0.007 Sum_probs=58.3
Q ss_pred CchhhHHHHHHHHHHHhhhcCCccEEECCCCchHHHHHHHHhhhhcCCCccchheeeecccccCCC-CCCCHHHHHHHHH
Q 020082 20 GRRRRCHASLRRCRSHHLRHGRSLSFDFVDGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPP-VKMTSSIVRESID 98 (331)
Q Consensus 20 ~~~~~~~~~l~~al~~~~~~GGin~~DTA~g~sE~~lG~~l~~~~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~i~~~~~ 98 (331)
.+.++..+.|++|..++-..| +.++=.|.-.++. ...+..-.++++ ..++.....+.. +.+ ...+.++++
T Consensus 199 vp~~e~i~kL~AAr~A~d~~g-~~~vIiARTDA~a--a~li~s~~d~rD-----~~fi~g~r~~eg~y~~-~~Gld~AI~ 269 (428)
T PRK15063 199 VPTQEAIRKLVAARLAADVMG-VPTLVIARTDAEA--ADLLTSDVDERD-----RPFITGERTAEGFYRV-KAGIEQAIA 269 (428)
T ss_pred ecHHHHHHHHHHHHHHHHhcC-CCeEEEEECCccc--cccccccccccc-----cccccCCCcccccccc-ccCHHHHHH
Confidence 477888899998887754565 6766556422211 111111111111 112221111211 111 124778888
Q ss_pred HHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHH--cCcccEEecC
Q 020082 99 VSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE--EGKIKTVALT 146 (331)
Q Consensus 99 ~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~--~Gkir~iGvS 146 (331)
+.+.-.. +-|+++++...+ +.+++-+..+.+.. =+++-.+|.|
T Consensus 270 Ra~AYa~--GAD~iw~Et~~~---d~ee~~~fa~~v~~~~P~~~layn~s 314 (428)
T PRK15063 270 RGLAYAP--YADLIWCETSTP---DLEEARRFAEAIHAKFPGKLLAYNCS 314 (428)
T ss_pred HHHHHhc--CCCEEEeCCCCC---CHHHHHHHHHhhcccCccceeecCCC
Confidence 8886654 999999985322 23444444444433 3556666766
No 251
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=22.89 E-value=5.2e+02 Score=24.41 Aligned_cols=58 Identities=12% Similarity=0.100 Sum_probs=40.1
Q ss_pred CcccHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEEccccccccc
Q 020082 146 TNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGGLL 203 (331)
Q Consensus 146 S~~~~~~l~~~~~~~~~~~~vq~~~nl~~~-~~~~~~~~~~~~~gi~via~~~l~~G~L 203 (331)
...+.+.+++++....+..++..+.|+.-. .+-+++.+.|+++|+.++.=.+++.|.+
T Consensus 136 d~~d~e~l~~ai~~~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~ 194 (398)
T PRK07504 136 DGLDLDNWEKAVRPNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLF 194 (398)
T ss_pred CCCCHHHHHHhcCcCceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCcccccc
Confidence 345677777776544567777777776422 2236788899999999988887765543
No 252
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.87 E-value=3e+02 Score=24.81 Aligned_cols=40 Identities=15% Similarity=0.246 Sum_probs=26.4
Q ss_pred HHHHHHHHHHc-CcccEEecCcccHHHHHHHHHcCCCeeeecc
Q 020082 127 ALNHLTDLKEE-GKIKTVALTNFDTERLRIILENGIPVVSNQV 168 (331)
Q Consensus 127 ~~~~l~~l~~~-Gkir~iGvS~~~~~~l~~~~~~~~~~~~vq~ 168 (331)
+-+++++.++. |.-+.||+|.++.+++.++.+.+ ++++++
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~g--aDyI~l 214 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVETETEEQVREAVAAG--ADIIMF 214 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcC--CCEEEE
Confidence 34444444443 32345999999999999988754 566665
No 253
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=22.57 E-value=2.5e+02 Score=21.89 Aligned_cols=49 Identities=20% Similarity=0.206 Sum_probs=29.2
Q ss_pred HHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEE
Q 020082 94 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV 143 (331)
Q Consensus 94 ~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~i 143 (331)
|..+.+.|+.+...-+|.+++...+.-.....+.+..++.|.+.| |+-+
T Consensus 51 Rp~l~~ll~~~~~g~~~~ivv~~~~Rl~R~~~~~~~~~~~l~~~g-i~l~ 99 (148)
T smart00857 51 RPGLQRLLADLRAGDIDVLVVYKLDRLGRSLRDLLALLELLEKKG-VRLV 99 (148)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhhCcHHHHHHHHHHHHHCC-CEEE
Confidence 445555555555555677777777654433456667777777666 4433
No 254
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.30 E-value=5.5e+02 Score=22.71 Aligned_cols=92 Identities=17% Similarity=0.232 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHcCcccEEecCcccHHH-------HHHHHH----cCC-CeeeecccccccccChhhhHHHHHHHhCCe
Q 020082 124 YLDALNHLTDLKEEGKIKTVALTNFDTER-------LRIILE----NGI-PVVSNQVQHSVVDMRPQQKMAELCQLTGVK 191 (331)
Q Consensus 124 ~~e~~~~l~~l~~~Gkir~iGvS~~~~~~-------l~~~~~----~~~-~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~ 191 (331)
.+++.+.++..++. ---++|+.||.... ++.+++ .+. -+|..-+. ..-.-..+++.||.
T Consensus 105 ~~e~~~rl~~a~~~-v~~~~GlnNhmGs~~tsn~~aM~~~m~~Lk~r~l~flDs~T~a--------~S~a~~iAk~~gVp 175 (250)
T COG2861 105 AEEILRRLRKAMNK-VPDAVGLNNHMGSRFTSNEDAMEKLMEALKERGLYFLDSGTIA--------NSLAGKIAKEIGVP 175 (250)
T ss_pred HHHHHHHHHHHHhh-CccceeehhhhhhhhcCcHHHHHHHHHHHHHCCeEEEcccccc--------cchhhhhHhhcCCc
Confidence 46888888888775 44688999976433 222222 121 11111111 11223346778888
Q ss_pred EEEccccccccccccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHcCC
Q 020082 192 LITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGV 258 (331)
Q Consensus 192 via~~~l~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~ 258 (331)
++....+--+-.+ .+.....++++..+|++.|.
T Consensus 176 ~~~rdvfLD~e~~----------------------------------~~~V~kql~~~~~~Ark~G~ 208 (250)
T COG2861 176 VIKRDVFLDDEDT----------------------------------EAAVLKQLDAAEKLARKNGS 208 (250)
T ss_pred eeeeeeeecCcCC----------------------------------HHHHHHHHHHHHHHHHhcCc
Confidence 8888776433111 13455567888999999875
No 255
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=22.23 E-value=4.6e+02 Score=25.47 Aligned_cols=93 Identities=13% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCcccEE---------EEecCCCCCchHHHHHHHHHHHHHc-CcccE---------EecCcccHHHHH
Q 020082 94 RESIDVSRRRMDVPCLDML---------QFHWWDYSNPGYLDALNHLTDLKEE-GKIKT---------VALTNFDTERLR 154 (331)
Q Consensus 94 ~~~~~~SL~rLg~d~lDl~---------~lH~~d~~~~~~~e~~~~l~~l~~~-Gkir~---------iGvS~~~~~~l~ 154 (331)
+..+-..|.++|.+.|++. ....++ -|+.++.+++. ..++. +|.+++..+.++
T Consensus 28 kl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~--------p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~ 99 (448)
T PRK12331 28 MLPILEKLDNAGYHSLEMWGGATFDACLRFLNED--------PWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVE 99 (448)
T ss_pred HHHHHHHHHHcCCCEEEecCCccchhhhccCCCC--------HHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHH
Q ss_pred HHHH--cCCCeeeecccccccccChhhhHHHHHHHhCCeEEE
Q 020082 155 IILE--NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 194 (331)
Q Consensus 155 ~~~~--~~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via 194 (331)
+.++ ....++.+.+...+-+...-...++++++.|..+.+
T Consensus 100 ~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 100 SFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQV 141 (448)
T ss_pred HHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEE
No 256
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=22.18 E-value=1.4e+02 Score=24.71 Aligned_cols=20 Identities=25% Similarity=0.301 Sum_probs=16.4
Q ss_pred hhHHHHHHHhCCeEEEcccc
Q 020082 179 QKMAELCQLTGVKLITYGTV 198 (331)
Q Consensus 179 ~~~~~~~~~~gi~via~~~l 198 (331)
...++.|++.|+..+...+-
T Consensus 74 ~~~i~~a~~lg~~~i~~~~g 93 (213)
T PF01261_consen 74 KKAIDLAKRLGAKYIVVHSG 93 (213)
T ss_dssp HHHHHHHHHHTBSEEEEECT
T ss_pred HHHHHHHHHhCCCceeecCc
Confidence 46899999999998887753
No 257
>PHA02128 hypothetical protein
Probab=22.11 E-value=2.9e+02 Score=20.89 Aligned_cols=71 Identities=8% Similarity=0.194 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHcCcccEEecCcccHHHHHHHHH-----------------cCCCeeee---cccccccccChhhhHHHH
Q 020082 125 LDALNHLTDLKEEGKIKTVALTNFDTERLRIILE-----------------NGIPVVSN---QVQHSVVDMRPQQKMAEL 184 (331)
Q Consensus 125 ~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~-----------------~~~~~~~v---q~~~nl~~~~~~~~~~~~ 184 (331)
..++....++..+|-+|-|-+..-+...+..++. +...+.+. ..+|.+..+....++.+|
T Consensus 60 ~gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydw 139 (151)
T PHA02128 60 TGLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDW 139 (151)
T ss_pred chHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhh
Confidence 3567777889999999999887766666555442 22222233 335887777667799999
Q ss_pred HHHhCCeEEEc
Q 020082 185 CQLTGVKLITY 195 (331)
Q Consensus 185 ~~~~gi~via~ 195 (331)
+-.+||.++.+
T Consensus 140 agthgvefvim 150 (151)
T PHA02128 140 AGTHGVEFVIM 150 (151)
T ss_pred cccCceEEEEe
Confidence 99999998865
No 258
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=21.88 E-value=6.6e+02 Score=23.44 Aligned_cols=80 Identities=15% Similarity=0.133 Sum_probs=52.5
Q ss_pred eecccccCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHHHHHH
Q 020082 76 RGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRI 155 (331)
Q Consensus 76 ~~~~k~~~~~~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~ 155 (331)
.+.+|.+--+.....+.+.+-+.+-++.+|....+++.+-.-. ... ++++++.|.++.+.+.|-.+|.+|.....+--
T Consensus 95 lV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~-g~g-v~eL~~~l~~~~~~~~v~~vG~~nvGKStliN 172 (360)
T TIGR03597 95 LVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKK-GNG-IDELLDKIKKARNKKDVYVVGVTNVGKSSLIN 172 (360)
T ss_pred EEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCC-CCC-HHHHHHHHHHHhCCCeEEEECCCCCCHHHHHH
Confidence 4455554222233456677667666777776544666654433 233 78899999888777789999999988776654
Q ss_pred HH
Q 020082 156 IL 157 (331)
Q Consensus 156 ~~ 157 (331)
.+
T Consensus 173 ~l 174 (360)
T TIGR03597 173 KL 174 (360)
T ss_pred HH
Confidence 44
No 259
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=21.85 E-value=62 Score=26.95 Aligned_cols=56 Identities=20% Similarity=0.094 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhCCCceeEeecccCCcHhHHHHhhchhcCCC
Q 020082 245 LLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSL 300 (331)
Q Consensus 245 ~~~~l~~ia~~~g~s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~~~a~~~~L 300 (331)
+-++++++.++.|+|..++|=+.-++...++-..-|-++.+.+.+...+++++.++
T Consensus 8 ~g~~l~~~R~~~glt~~elA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~~ 63 (185)
T PRK09943 8 PGKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSL 63 (185)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCH
Confidence 34678888888888888887776666655555555555544777877777776654
No 260
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=21.79 E-value=2.6e+02 Score=21.10 Aligned_cols=51 Identities=12% Similarity=0.072 Sum_probs=28.1
Q ss_pred CcccHHHHHHHHHcCCCeeeecccccccccChhhhHHHHHHHhCCeEEEccc
Q 020082 146 TNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 197 (331)
Q Consensus 146 S~~~~~~l~~~~~~~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~ 197 (331)
+..+++.+..+.... +++++=+--.--.+.+..++.+.++++||++..+.+
T Consensus 37 ~~l~~~~l~~~~~~~-~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T 87 (109)
T cd00248 37 SDLDPEALLPLLAED-RPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMST 87 (109)
T ss_pred ccCCHHHHHHHHhhC-CCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCc
Confidence 344556666665543 233333322111122335678888888888888765
No 261
>PF07027 DUF1318: Protein of unknown function (DUF1318); InterPro: IPR008309 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.79 E-value=1.9e+02 Score=21.42 Aligned_cols=30 Identities=20% Similarity=0.150 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 020082 240 SQFQVLLQTLKRIASKHGVSIPVVAVRYIL 269 (331)
Q Consensus 240 ~~~~~~~~~l~~ia~~~g~s~aq~Al~~~l 269 (331)
+.+.++...+.+||++.|+|+.+++-.|.-
T Consensus 44 ~~N~~R~~~Y~~iA~~ng~t~~~V~~~~a~ 73 (95)
T PF07027_consen 44 AINADRRALYQEIAKKNGITVEQVAATAAQ 73 (95)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 456677789999999999999888766654
No 262
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=21.76 E-value=6.3e+02 Score=23.18 Aligned_cols=71 Identities=7% Similarity=0.168 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHH----HHHHHHHcCCCeee
Q 020082 90 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTE----RLRIILENGIPVVS 165 (331)
Q Consensus 90 ~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~----~l~~~~~~~~~~~~ 165 (331)
...+.+.+++..+.+| +++.+ ..+.... .+...+.++.+.++| +..|-++..++. .+.++.+.++|+..
T Consensus 38 ~~~~~~Gi~~aa~~~G---~~v~~-~~~~~~d--~~~q~~~i~~li~~~-vdgIiv~~~d~~al~~~l~~a~~~gIpVV~ 110 (336)
T PRK15408 38 FTSGGNGAKEAGKELG---VDVTY-DGPTEPS--VSGQVQLINNFVNQG-YNAIIVSAVSPDGLCPALKRAMQRGVKVLT 110 (336)
T ss_pred HHHHHHHHHHHHHHhC---CEEEE-ECCCCCC--HHHHHHHHHHHHHcC-CCEEEEecCCHHHHHHHHHHHHHCCCeEEE
Confidence 5568888999999998 44543 3443222 456678889999875 888888776644 45566566777655
Q ss_pred ec
Q 020082 166 NQ 167 (331)
Q Consensus 166 vq 167 (331)
+-
T Consensus 111 ~d 112 (336)
T PRK15408 111 WD 112 (336)
T ss_pred eC
Confidence 43
No 263
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=21.73 E-value=7e+02 Score=23.68 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCC
Q 020082 126 DALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 162 (331)
Q Consensus 126 e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~ 162 (331)
+..+....|++.|-|-.+|=||-+.++.+++.+.|..
T Consensus 174 ~~~e~i~~l~~~giivs~GHS~Atye~~~~a~~~Ga~ 210 (380)
T COG1820 174 GTKELIRLLANAGIVVSIGHSNATYEQARAAFEAGAT 210 (380)
T ss_pred CCHHHHHHHHhCCeEEEecCccccHHHHHHHHHhCcc
Confidence 3567788899999999999999999999999987643
No 264
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=21.72 E-value=6.7e+02 Score=23.45 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=36.6
Q ss_pred cHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEEcccccccc
Q 020082 149 DTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGGL 202 (331)
Q Consensus 149 ~~~~l~~~~~~~~~~~~vq~~~nl~~~-~~~~~~~~~~~~~gi~via~~~l~~G~ 202 (331)
+.+.+++++....+..++..+.|+.-. ..-+++.+.|+++|+.++.=..++.+.
T Consensus 128 d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~ 182 (380)
T TIGR01325 128 DLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPV 182 (380)
T ss_pred CHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 567777666434456666667776422 234678999999999999877766543
No 265
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some
Probab=21.34 E-value=2.1e+02 Score=21.63 Aligned_cols=43 Identities=21% Similarity=0.195 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcC
Q 020082 94 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG 138 (331)
Q Consensus 94 ~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~G 138 (331)
|..+++.++.+. ..|.+++++.+.-.-...+.+..+..+.+.|
T Consensus 42 R~~~~~ll~~~~--~~d~lvv~~~dRl~R~~~e~~~~~~~l~~~g 84 (126)
T cd03768 42 RPELQKLLEDLR--EGDTLVVTKLDRLGRSTKDLLEIVEELREKG 84 (126)
T ss_pred CHHHHHHHHhCc--CCCEEEEEEcchhcCcHHHHHHHHHHHHHCC
Confidence 334444445554 4788888887765444566777777776665
No 266
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=21.28 E-value=1.2e+02 Score=27.63 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=21.0
Q ss_pred cCCCCCCchhhHHHHHHHHHHHhhhcCCccEEECCC
Q 020082 14 VGPYRPGRRRRCHASLRRCRSHHLRHGRSLSFDFVD 49 (331)
Q Consensus 14 ~g~~~~~~~~~~~~~l~~al~~~~~~GGin~~DTA~ 49 (331)
||...+.....+..+++-|=+.++=. |+||||+-
T Consensus 128 FGm~~PeGyRKAlRlm~~AekF~lPi--itfIDT~G 161 (317)
T COG0825 128 FGMPRPEGYRKALRLMKLAEKFGLPI--ITFIDTPG 161 (317)
T ss_pred CCCCCchHHHHHHHHHHHHHHhCCCE--EEEecCCC
Confidence 44323334446777777776654333 89999986
No 267
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=21.03 E-value=4.2e+02 Score=25.73 Aligned_cols=88 Identities=14% Similarity=0.083 Sum_probs=53.8
Q ss_pred HHHcCCCcccEEEEecCCCC-CchHHHHHHHHHHHHHcCcccEEecCcccHHHHHHHHH-----cC-CC-eeeecccccc
Q 020082 101 RRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE-----NG-IP-VVSNQVQHSV 172 (331)
Q Consensus 101 L~rLg~d~lDl~~lH~~d~~-~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~-----~~-~~-~~~vq~~~nl 172 (331)
.+.||++|. ++-.|-.. .. ..+. ...+-+.|-...+|....+++++++.+. .. .+ |-+|-+ .+.
T Consensus 12 ~~~lgiryP---iiqgpMa~GiS-s~eL---VaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~ 83 (444)
T TIGR02814 12 REDYGVRYA---YVAGAMANGIA-SAEL---VIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSP 83 (444)
T ss_pred HHHhCCCCc---EECccccCCCC-CHHH---HHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccC
Confidence 456776655 33333321 11 1233 4455689999999999999999887774 11 13 444433 332
Q ss_pred cccChhhhHHHHHHHhCCeEEEcc
Q 020082 173 VDMRPQQKMAELCQLTGVKLITYG 196 (331)
Q Consensus 173 ~~~~~~~~~~~~~~~~gi~via~~ 196 (331)
-+...+..+++.|.+++|.++..+
T Consensus 84 ~~~~~e~~~v~l~l~~~V~~veas 107 (444)
T TIGR02814 84 SDPALEWGLVDLLLRHGVRIVEAS 107 (444)
T ss_pred CCcccHHHHHHHHHHcCCCEEEec
Confidence 222234578999999999988665
No 268
>PRK14847 hypothetical protein; Provisional
Probab=21.02 E-value=6.5e+02 Score=23.39 Aligned_cols=105 Identities=9% Similarity=0.015 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCc----ccEEecCcccHHHHHHHHHcCC-
Q 020082 87 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK----IKTVALTNFDTERLRIILENGI- 161 (331)
Q Consensus 87 ~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gk----ir~iGvS~~~~~~l~~~~~~~~- 161 (331)
.++.+ =+-.+-+.|.++|+|.|..= .|- .. ++-.++..++.+.|+ ++-.+++....+.++.+++.+.
T Consensus 50 ~fs~e-eKl~IA~~L~~lGVd~IEvG---~Pa--~s--~~e~e~ir~I~~~~~~~~~~~i~~~~r~~~~dId~a~e~~~~ 121 (333)
T PRK14847 50 PMDGA-RKLRLFEQLVAVGLKEIEVA---FPS--AS--QTDFDFVRKLIDERRIPDDVTIEALTQSRPDLIARTFEALAG 121 (333)
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEee---CCC--CC--HHHHHHHHHHHHhCCCCCCcEEEEEecCcHHHHHHHHHHhCC
Confidence 35555 34566777999998877762 232 21 334667777777764 6677788777888887776421
Q ss_pred ---Ceeeeccccccccc------Ch------hhhHHHHHHHhCC---e---EEEccccc
Q 020082 162 ---PVVSNQVQHSVVDM------RP------QQKMAELCQLTGV---K---LITYGTVM 199 (331)
Q Consensus 162 ---~~~~vq~~~nl~~~------~~------~~~~~~~~~~~gi---~---via~~~l~ 199 (331)
+...+-++-|.+.+ .. -.+.+.++++++. + .+.+++-.
T Consensus 122 ~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~ED 180 (333)
T PRK14847 122 SPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPET 180 (333)
T ss_pred CCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeec
Confidence 22323333332211 11 1257788999855 2 36777654
No 269
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=20.98 E-value=7.4e+02 Score=23.91 Aligned_cols=54 Identities=7% Similarity=-0.033 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEEec-CCCCCchHHHHHHHHHHHHHcCcccEEecC
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDMLQFHW-WDYSNPGYLDALNHLTDLKEEGKIKTVALT 146 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~~lH~-~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS 146 (331)
.+.+.+.+.++. ++..|.+.+-+-++-. |... .+++.+.++.+.+-| +.+|.+.
T Consensus 184 ~~~~~~~~ai~~-l~~~G~~~v~~dli~GlPgqt---~e~~~~~l~~~~~l~-~~~i~~y 238 (453)
T PRK09249 184 QPFEFTFALVEA-ARELGFTSINIDLIYGLPKQT---PESFARTLEKVLELR-PDRLAVF 238 (453)
T ss_pred CCHHHHHHHHHH-HHHcCCCcEEEEEEccCCCCC---HHHHHHHHHHHHhcC-CCEEEEc
Confidence 466667766665 3444655444433333 3221 234444444444443 4455444
No 270
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=20.69 E-value=7.1e+02 Score=23.36 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=38.7
Q ss_pred HHHHHHHHcCCCeeeecccccccccCh-hhhHHHHHHHhCCeEEEccccccccc
Q 020082 151 ERLRIILENGIPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGGLL 203 (331)
Q Consensus 151 ~~l~~~~~~~~~~~~vq~~~nl~~~~~-~~~~~~~~~~~gi~via~~~l~~G~L 203 (331)
+.+++++....+..++..+.|+.-... -+++.+.|+++|+-++.=...+.|.+
T Consensus 126 e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~ 179 (377)
T TIGR01324 126 EDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLL 179 (377)
T ss_pred HHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccc
Confidence 566666654456777777888753222 35789999999999999988887765
No 271
>PF13518 HTH_28: Helix-turn-helix domain
Probab=20.65 E-value=1.2e+02 Score=18.85 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=16.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Q 020082 248 TLKRIASKHGVSIPVVAVRYILD 270 (331)
Q Consensus 248 ~l~~ia~~~g~s~aq~Al~~~l~ 270 (331)
.+.++|.++|++..++ .+|+-.
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~~ 35 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIKR 35 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHHH
Confidence 5677888899988775 777653
No 272
>PRK10551 phage resistance protein; Provisional
Probab=20.60 E-value=3.8e+02 Score=26.54 Aligned_cols=101 Identities=9% Similarity=0.131 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHcCCCcccEEE-EecCCCCCchHHHHHHHHHHHHHcCcccEEecCccc--HHHHHHHHHcCCCeeeec
Q 020082 91 SIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD--TERLRIILENGIPVVSNQ 167 (331)
Q Consensus 91 ~~i~~~~~~SL~rLg~d~lDl~~-lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~--~~~l~~~~~~~~~~~~vq 167 (331)
+.+...+.+.++.++.+..-+.+ +....... ..+..+.++.|++.|- .|.+.+|. ...+..+.. .+++.+-
T Consensus 364 ~~f~~~l~~~l~~~~~~~~~LvlEItE~~~~~--~~~~~~~l~~Lr~~G~--~ialDDFGtg~ssl~~L~~--l~vD~lK 437 (518)
T PRK10551 364 DSFKADVQRLLASLPADHFQIVLEITERDMVQ--EEEATKLFAWLHSQGI--EIAIDDFGTGHSALIYLER--FTLDYLK 437 (518)
T ss_pred chHHHHHHHHHHhCCCCcceEEEEEechHhcC--CHHHHHHHHHHHHCCC--EEEEECCCCCchhHHHHHh--CCCCEEE
Confidence 44566777888888766433322 22222111 1346678899999998 56666553 334444443 3566666
Q ss_pred cccccccc---C-----hhhhHHHHHHHhCCeEEEccc
Q 020082 168 VQHSVVDM---R-----PQQKMAELCQLTGVKLITYGT 197 (331)
Q Consensus 168 ~~~nl~~~---~-----~~~~~~~~~~~~gi~via~~~ 197 (331)
+.-+.+.. . .-..++..|++.|+.+++=++
T Consensus 438 ID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAEGV 475 (518)
T PRK10551 438 IDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAEGV 475 (518)
T ss_pred ECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 55444321 1 124689999999999997654
No 273
>PLN02444 HMP-P synthase
Probab=20.44 E-value=8.9e+02 Score=24.39 Aligned_cols=165 Identities=12% Similarity=0.032 Sum_probs=94.2
Q ss_pred ccceeeecc-------ccCCCC-CCchhhHHHHHHHHHHHhhhcCCccEEECCCCchHHHHHHHHhh-hhcCCCccchhe
Q 020082 4 VERDVADEW-------RVGPYR-PGRRRRCHASLRRCRSHHLRHGRSLSFDFVDGPAEDLYGIFINR-VRRERPPEFLDK 74 (331)
Q Consensus 4 vS~l~lGt~-------~~g~~~-~~~~~~~~~~l~~al~~~~~~GGin~~DTA~g~sE~~lG~~l~~-~~~~~~~~~~~~ 74 (331)
+.++++|-. ++|+-. ..+.++-.+.++.|++.|. -+..|-+.|..-..+.+++-+ .+ ..+-+
T Consensus 210 ~~p~~IG~gl~tKVNANIGtS~~~s~ie~EveK~~~A~~~GA----DTvMDLSTGgdi~~iR~~Il~~sp-----vPVGT 280 (642)
T PLN02444 210 LEPMIVGRNFLVKVNANIGNSAVTSSIEEEVYKLQWATMWGA----DTVMDLSTGRHIHETREWILRNSP-----VPVGT 280 (642)
T ss_pred CCceEecCCceeEEeeeecCCCCCCCHHHHHHHHHHHHHcCC----CeEeeccCCCCHHHHHHHHHHcCC-----CCccC
Confidence 445555553 456422 2466677777888876632 456888886666666666543 22 23333
Q ss_pred eeecc---cccCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecCcccHH
Q 020082 75 VRGLT---KWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTE 151 (331)
Q Consensus 75 ~~~~~---k~~~~~~~~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS~~~~~ 151 (331)
+-++. +......+++.+.++..+++-.+ +-+|.+-||.-- ..+.++.++ + |..|+-+-...
T Consensus 281 VPIYqA~~~~~~~~~~lt~d~~~d~ieeQae----qGVDfmTIH~Gv--------~~~~v~~~~--~--R~tgIVSRGGS 344 (642)
T PLN02444 281 VPIYQALEKVDGIAENLTWEVFRETLIEQAE----QGVDYFTIHAGV--------LLRYIPLTA--K--RMTGIVSRGGS 344 (642)
T ss_pred ccHHHHHHHhcCChhhCCHHHHHHHHHHHHH----hCCCEEEEChhh--------HHHHHHHHh--C--cccCceeCCcH
Confidence 32221 12123346788888888877554 347888899742 334444444 3 67787766555
Q ss_pred HHHHHHHcCCCeeeecccccccccChhhhHHHHHHHhCCeEEEccccccccccc
Q 020082 152 RLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSE 205 (331)
Q Consensus 152 ~l~~~~~~~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l~~G~L~g 205 (331)
-+...+.+. -.-|++- ..-+++++.|++.+|.+- |+-|+=.|
T Consensus 345 i~a~Wml~~-------~kENPlY-e~FD~ileI~k~YDVtlS----LGDGLRPG 386 (642)
T PLN02444 345 IHAKWCLAY-------HKENFAY-EHWDDILDICNQYDIALS----IGDGLRPG 386 (642)
T ss_pred HHHHHHHHc-------CCcCchH-HHHHHHHHHHHHhCeeee----ccCCcCCC
Confidence 554444321 1234442 233589999999999875 55554433
No 274
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=20.39 E-value=7.8e+02 Score=23.76 Aligned_cols=109 Identities=10% Similarity=0.075 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEEecCC---------CCC-----c----hHHHHHHHHHHHHH-----cCcccEEe
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWD---------YSN-----P----GYLDALNHLTDLKE-----EGKIKTVA 144 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d---------~~~-----~----~~~e~~~~l~~l~~-----~Gkir~iG 144 (331)
..++.+.....+.+++-..+.--.+|||-|- ... . +++.+.+.++...+ .+.|..|=
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy 119 (449)
T PRK09058 40 VPAEQLAATWQRLTQQTLRARKRLLYIHIPFCRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVY 119 (449)
T ss_pred CChHHHHHHHHHHHhhcCCCCceEEEEEeCCcCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEE
Confidence 3456676667666643222333468899771 100 0 12334455554443 24566553
Q ss_pred cC-----cccHHHHHHHHHc---CCCee---eecccccccccChhhhHHHHHHHhCCeEEEcccc
Q 020082 145 LT-----NFDTERLRIILEN---GIPVV---SNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 198 (331)
Q Consensus 145 vS-----~~~~~~l~~~~~~---~~~~~---~vq~~~nl~~~~~~~~~~~~~~~~gi~via~~~l 198 (331)
+. ..+++++.++++. ..++. -+-++-|+- ....+.++.+++.|+.-+..++-
T Consensus 120 ~GGGTPs~L~~~~l~~ll~~i~~~~~l~~~~eitiE~~p~--~~t~e~l~~l~~aGvnRiSiGVQ 182 (449)
T PRK09058 120 FGGGTPTALSAEDLARLITALREYLPLAPDCEITLEGRIN--GFDDEKADAALDAGANRFSIGVQ 182 (449)
T ss_pred ECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCcC--cCCHHHHHHHHHcCCCEEEecCC
Confidence 32 2456777777741 12211 122333332 12457899999999988877764
No 275
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=20.39 E-value=3.1e+02 Score=24.20 Aligned_cols=73 Identities=12% Similarity=0.131 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCcccEEecCcccHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEEccccccc
Q 020082 127 ALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 201 (331)
Q Consensus 127 ~~~~l~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~-~~~~~~~~~~~~~gi~via~~~l~~G 201 (331)
-++.+.++. -+.=-..|=|-++...+..+++.+ .++++|+..+..-- .....+.+.|+.+|+.++..+-+..+
T Consensus 166 d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~-~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~ 239 (263)
T cd03320 166 DLAELRRLA-AGVPIALDESLRRLDDPLALAAAG-ALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALESS 239 (263)
T ss_pred HHHHHHHhh-cCCCeeeCCccccccCHHHHHhcC-CCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchhhH
Confidence 345555555 333335565666777777777754 46777776554311 12357899999999999887555444
No 276
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=20.30 E-value=62 Score=31.36 Aligned_cols=53 Identities=11% Similarity=0.144 Sum_probs=27.8
Q ss_pred CcccEEecCcccHHHHHHHHHcCCCeeeecccccccccChhhhHHHHHHHhCC
Q 020082 138 GKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGV 190 (331)
Q Consensus 138 Gkir~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~~~~~~~~~~~~~~gi 190 (331)
+.++++|+..++.+.+.++...--.-+.++.+..++--..+.++++.|++.||
T Consensus 264 ~~Ar~fG~ll~d~d~i~eaa~~~~~~~~y~~~~~~~ldp~dp~v~~~A~~~gi 316 (492)
T TIGR01660 264 GRIRYLGVLLYDADKIEEAASTENEKDLYHRQLDVFLDPNDPEVIAQAKKDGI 316 (492)
T ss_pred hhhhhhhhhccCcHHHHHHHhcccchhHHHHhhceecCCCCHHHHHHHHHcCC
Confidence 35688888888888877776531112333333333311112345555555554
No 277
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=20.29 E-value=4.2e+02 Score=25.41 Aligned_cols=56 Identities=21% Similarity=0.178 Sum_probs=39.4
Q ss_pred ccHHHHHHHHHcCCCeeeecccccccccC-hhhhHHHHHHHhCCeEEEccccccccc
Q 020082 148 FDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITYGTVMGGLL 203 (331)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~vq~~~nl~~~~-~~~~~~~~~~~~gi~via~~~l~~G~L 203 (331)
.+.+.+++++....+..++..+.|+.-.- .-..+.+.|+++|+.++.=.+.+.+.+
T Consensus 131 ~d~e~le~ai~~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~ 187 (425)
T PRK06084 131 DDIAALEALIDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVL 187 (425)
T ss_pred CCHHHHHHHhccCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc
Confidence 36778888776445666666666764322 236788999999999998888876644
No 278
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=20.27 E-value=4.2e+02 Score=24.05 Aligned_cols=44 Identities=16% Similarity=0.287 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHhCCCceeEeecccCCcHhHHHHhh
Q 020082 247 QTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTN 293 (331)
Q Consensus 247 ~~l~~ia~~~g~------s~aq~Al~~~l~~~~v~~~i~G~~~~~~~~l~e~~ 293 (331)
.+|.++|+++|. ++.++-..|+-... ...+-.|+|+ |+.|-+++
T Consensus 228 ~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~-~VGvTAGASt--Pd~lV~~V 277 (294)
T COG0761 228 NRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVK-TVGVTAGAST--PDWLVQEV 277 (294)
T ss_pred HHHHHHHHHhCCCeEEeCChHhCCHHHhcCcc-EEEEecCCCC--CHHHHHHH
Confidence 789999999986 57888899998854 4567799999 99876654
No 279
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=20.22 E-value=4.9e+02 Score=24.92 Aligned_cols=69 Identities=9% Similarity=0.068 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcC---cc-cEEecCcccHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEEcc
Q 020082 127 ALNHLTDLKEEG---KI-KTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYG 196 (331)
Q Consensus 127 ~~~~l~~l~~~G---ki-r~iGvS~~~~~~l~~~~~~~~~~~~vq~~~nl~~~-~~~~~~~~~~~~~gi~via~~ 196 (331)
-++.+.+|++.. .| -..|=|.++...++++++.+ .++++|....-.-- .....+...|+.+|+.++.++
T Consensus 279 d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~-a~dil~~d~~~~GGit~~~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 279 DILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAG-AIDVVQIDSCRLGGVNENLAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred cHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcC-CCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEcC
Confidence 355566666653 23 24454567888888888755 57888877654321 123578999999999998764
No 280
>PLN00191 enolase
Probab=20.15 E-value=5.9e+02 Score=24.82 Aligned_cols=98 Identities=7% Similarity=0.023 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecC--cccHHHHHHHHHcCCCeee
Q 020082 88 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT--NFDTERLRIILENGIPVVS 165 (331)
Q Consensus 88 ~~~~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS--~~~~~~l~~~~~~~~~~~~ 165 (331)
.+++.+.+-+...++ ..++.+|-.|-.. +-|+.+.+|.+..+|--+|=- ..++..++++++.+ -.++
T Consensus 295 ~s~~e~i~~~~~L~~-----~y~I~~IEDPl~~-----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~-aad~ 363 (457)
T PLN00191 295 KSGDELIDLYKEFVS-----DYPIVSIEDPFDQ-----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEK-ACNA 363 (457)
T ss_pred cCHHHHHHHHHHHhh-----cCCcEEEECCCCc-----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhC-CCCE
Confidence 356655555544433 3457777776432 346677778888888766622 35688899888754 4777
Q ss_pred eccccccccc-ChhhhHHHHHHHhCCeEEEcc
Q 020082 166 NQVQHSVVDM-RPQQKMAELCQLTGVKLITYG 196 (331)
Q Consensus 166 vq~~~nl~~~-~~~~~~~~~~~~~gi~via~~ 196 (331)
+++..|-+-- ....++.+.|+++|+.++.-.
T Consensus 364 i~iKl~qiGGITea~~~a~lA~~~G~~~~ish 395 (457)
T PLN00191 364 LLLKVNQIGTVTESIEAVKMSKAAGWGVMTSH 395 (457)
T ss_pred EEecccccCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 7777664321 123578999999999998643
No 281
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=20.09 E-value=8.3e+02 Score=23.91 Aligned_cols=49 Identities=10% Similarity=0.087 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEEecCCCCCchHHHHHHHHHHHHHcCcccEEecC
Q 020082 91 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT 146 (331)
Q Consensus 91 ~~i~~~~~~SL~rLg~d~lDl~~lH~~d~~~~~~~e~~~~l~~l~~~Gkir~iGvS 146 (331)
+-++..++.+++. |+|.+-++. ...+ ++.+..+.+..++.|+.-...+|
T Consensus 95 Dvv~~fv~~A~~~-Gvd~irif~-----~lnd-~~n~~~~i~~ak~~G~~v~~~i~ 143 (467)
T PRK14041 95 DVVELFVKKVAEY-GLDIIRIFD-----ALND-IRNLEKSIEVAKKHGAHVQGAIS 143 (467)
T ss_pred hhhHHHHHHHHHC-CcCEEEEEE-----eCCH-HHHHHHHHHHHHHCCCEEEEEEE
Confidence 3355556776654 766554442 2222 56677778888899986554443
Done!