Query 020083
Match_columns 331
No_of_seqs 153 out of 1457
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 06:52:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020083.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020083hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 3.8E-68 8.3E-73 487.8 32.3 298 1-302 9-310 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 5.5E-67 1.2E-71 471.0 31.0 305 2-311 21-335 (336)
3 TIGR01293 Kv_beta voltage-depe 100.0 4E-61 8.6E-66 444.4 31.4 293 2-300 8-317 (317)
4 PRK10625 tas putative aldo-ket 100.0 9.6E-60 2.1E-64 440.2 32.5 296 2-301 10-339 (346)
5 COG0656 ARA1 Aldo/keto reducta 100.0 1.5E-60 3.3E-65 421.8 25.1 249 2-303 11-266 (280)
6 PRK09912 L-glyceraldehyde 3-ph 100.0 2E-59 4.4E-64 437.4 32.2 296 2-302 22-334 (346)
7 PLN02587 L-galactose dehydroge 100.0 4.9E-58 1.1E-62 423.3 30.4 279 2-301 8-300 (314)
8 PRK10376 putative oxidoreducta 100.0 1E-57 2.2E-62 416.4 30.3 268 2-301 14-288 (290)
9 PF00248 Aldo_ket_red: Aldo/ke 100.0 2.7E-58 5.8E-63 419.5 26.4 276 7-300 1-282 (283)
10 cd06660 Aldo_ket_red Aldo-keto 100.0 2E-56 4.3E-61 407.6 31.2 274 2-299 8-285 (285)
11 PRK11172 dkgB 2,5-diketo-D-glu 100.0 1.2E-56 2.6E-61 404.7 27.6 246 3-302 1-253 (267)
12 PRK14863 bifunctional regulato 100.0 1.1E-56 2.3E-61 409.1 24.3 269 1-298 1-279 (292)
13 KOG1577 Aldo/keto reductase fa 100.0 7.4E-55 1.6E-59 385.5 23.8 254 1-304 11-288 (300)
14 PRK11565 dkgA 2,5-diketo-D-glu 100.0 3.9E-53 8.3E-58 383.1 26.9 248 2-303 12-264 (275)
15 COG4989 Predicted oxidoreducta 100.0 2.1E-53 4.6E-58 360.8 22.0 276 2-303 10-295 (298)
16 KOG1576 Predicted oxidoreducta 100.0 9.3E-50 2E-54 341.0 23.9 272 2-290 31-310 (342)
17 COG1453 Predicted oxidoreducta 100.0 1.8E-49 4E-54 354.6 24.1 262 2-300 10-284 (391)
18 KOG3023 Glutamate-cysteine lig 97.5 0.00015 3.3E-09 62.5 5.6 71 125-196 155-227 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 93.0 3.5 7.6E-05 38.0 13.9 154 24-201 134-291 (316)
20 cd03316 MR_like Mandelate race 88.2 22 0.00048 33.2 14.8 153 24-197 139-299 (357)
21 COG0635 HemN Coproporphyrinoge 85.2 5.8 0.00013 38.2 9.1 109 5-151 148-276 (416)
22 cd00423 Pterin_binding Pterin 82.4 34 0.00073 30.5 12.4 102 90-197 21-128 (258)
23 COG1748 LYS9 Saccharopine dehy 82.0 6.8 0.00015 37.2 8.0 82 25-122 78-159 (389)
24 PRK07945 hypothetical protein; 82.0 36 0.00078 31.8 12.8 107 26-146 111-227 (335)
25 cd03315 MLE_like Muconate lact 81.3 39 0.00085 30.1 15.4 157 24-201 85-243 (265)
26 PRK07535 methyltetrahydrofolat 81.0 34 0.00074 30.7 11.8 135 91-254 23-158 (261)
27 cd00739 DHPS DHPS subgroup of 80.2 37 0.00081 30.3 11.8 143 90-253 21-169 (257)
28 PRK08392 hypothetical protein; 80.0 22 0.00048 30.7 10.1 147 27-193 15-178 (215)
29 PRK10550 tRNA-dihydrouridine s 80.0 50 0.0011 30.5 13.3 133 24-169 73-224 (312)
30 PRK13796 GTPase YqeH; Provisio 78.3 54 0.0012 30.9 12.8 121 23-155 54-177 (365)
31 cd03174 DRE_TIM_metallolyase D 78.0 16 0.00034 32.4 8.8 105 89-195 15-134 (265)
32 PRK13958 N-(5'-phosphoribosyl) 75.3 9.6 0.00021 32.9 6.3 67 103-171 17-84 (207)
33 PF07021 MetW: Methionine bios 73.5 14 0.00031 31.5 6.7 149 30-201 5-171 (193)
34 PRK08609 hypothetical protein; 73.4 30 0.00066 34.8 10.2 149 28-193 351-522 (570)
35 cd03323 D-glucarate_dehydratas 72.6 91 0.002 29.8 15.1 150 24-198 168-321 (395)
36 PRK07379 coproporphyrinogen II 72.4 21 0.00046 34.1 8.6 59 90-150 179-254 (400)
37 PRK09613 thiH thiamine biosynt 72.3 42 0.00091 32.9 10.6 171 23-195 28-238 (469)
38 COG1140 NarY Nitrate reductase 72.2 1.8 3.8E-05 40.4 1.0 54 138-191 263-317 (513)
39 PRK05660 HemN family oxidoredu 72.1 25 0.00053 33.4 8.8 61 89-151 170-243 (378)
40 cd00308 enolase_like Enolase-s 71.3 37 0.0008 29.5 9.3 87 111-201 120-208 (229)
41 TIGR02370 pyl_corrinoid methyl 70.7 46 0.00099 28.4 9.5 145 24-190 10-164 (197)
42 PRK06294 coproporphyrinogen II 70.4 29 0.00062 32.8 8.9 60 89-150 166-242 (370)
43 PRK00730 rnpA ribonuclease P; 70.0 25 0.00053 28.3 7.0 63 66-138 46-110 (138)
44 PRK10558 alpha-dehydro-beta-de 69.5 55 0.0012 29.3 10.0 65 131-197 9-77 (256)
45 PF00682 HMGL-like: HMGL-like 69.0 46 0.001 29.0 9.4 162 23-200 11-194 (237)
46 PRK09856 fructoselysine 3-epim 68.2 60 0.0013 28.8 10.2 52 179-249 93-144 (275)
47 COG0761 lytB 4-Hydroxy-3-methy 67.7 97 0.0021 28.2 10.9 45 237-282 228-278 (294)
48 cd03322 rpsA The starvation se 67.2 1.1E+02 0.0024 28.7 14.8 146 24-197 126-273 (361)
49 PRK01222 N-(5'-phosphoribosyl) 67.0 14 0.00031 31.9 5.6 74 91-171 12-86 (210)
50 TIGR01928 menC_lowGC/arch o-su 66.9 1.1E+02 0.0023 28.3 14.7 154 24-202 132-287 (324)
51 TIGR00735 hisF imidazoleglycer 66.7 93 0.002 27.6 12.0 89 101-192 162-253 (254)
52 PRK04452 acetyl-CoA decarbonyl 66.6 1.1E+02 0.0024 28.4 11.7 92 104-198 86-184 (319)
53 PF03102 NeuB: NeuB family; I 66.5 24 0.00052 31.3 6.9 109 23-152 53-183 (241)
54 PRK09058 coproporphyrinogen II 66.0 27 0.00059 33.9 7.9 29 89-118 226-254 (449)
55 PRK08446 coproporphyrinogen II 64.8 66 0.0014 30.1 10.0 60 90-151 162-231 (350)
56 TIGR00126 deoC deoxyribose-pho 63.8 42 0.00091 29.1 7.8 72 24-110 130-205 (211)
57 TIGR00190 thiC thiamine biosyn 63.2 61 0.0013 30.9 9.1 147 23-202 74-225 (423)
58 PRK00164 moaA molybdenum cofac 62.8 1.3E+02 0.0028 27.8 13.5 149 23-194 49-228 (331)
59 PRK10128 2-keto-3-deoxy-L-rham 62.7 99 0.0022 27.8 10.3 65 131-197 8-76 (267)
60 cd00740 MeTr MeTr subgroup of 62.5 1.1E+02 0.0025 27.1 12.4 103 90-197 23-127 (252)
61 cd04731 HisF The cyclase subun 61.9 1.1E+02 0.0023 26.9 10.3 84 101-187 156-242 (243)
62 PF13378 MR_MLE_C: Enolase C-t 61.4 14 0.00031 28.0 4.2 54 147-201 3-57 (111)
63 TIGR01502 B_methylAsp_ase meth 61.2 50 0.0011 31.8 8.5 86 112-198 265-357 (408)
64 TIGR03822 AblA_like_2 lysine-2 60.8 1.4E+02 0.003 27.6 11.8 105 23-140 119-228 (321)
65 PLN02363 phosphoribosylanthran 60.2 27 0.00058 31.3 6.1 75 91-171 56-131 (256)
66 cd04740 DHOD_1B_like Dihydroor 60.1 1.3E+02 0.0029 27.1 13.3 151 24-190 100-286 (296)
67 COG0135 TrpF Phosphoribosylant 59.9 58 0.0013 28.2 7.9 81 104-193 19-102 (208)
68 PRK13347 coproporphyrinogen II 59.7 44 0.00095 32.6 8.1 112 29-151 152-291 (453)
69 cd03314 MAL Methylaspartate am 59.5 1.4E+02 0.0031 28.3 11.1 85 113-197 229-320 (369)
70 PF11242 DUF2774: Protein of u 58.9 13 0.00029 25.2 3.0 22 238-259 15-36 (63)
71 COG1801 Uncharacterized conser 58.6 1.4E+02 0.003 26.9 10.5 120 7-134 4-127 (263)
72 PRK05628 coproporphyrinogen II 58.3 67 0.0015 30.3 8.9 28 89-117 171-198 (375)
73 TIGR03239 GarL 2-dehydro-3-deo 57.8 1.1E+02 0.0024 27.1 9.7 64 132-197 3-70 (249)
74 COG2355 Zn-dependent dipeptida 57.4 72 0.0016 29.5 8.5 106 27-148 150-260 (313)
75 COG4464 CapC Capsular polysacc 57.1 1.3E+02 0.0029 26.2 9.4 30 23-52 17-46 (254)
76 PRK00507 deoxyribose-phosphate 56.4 55 0.0012 28.6 7.4 76 23-110 133-209 (221)
77 PRK13352 thiamine biosynthesis 56.2 95 0.0021 29.8 9.2 147 23-202 74-228 (431)
78 cd03318 MLE Muconate Lactonizi 55.8 61 0.0013 30.4 8.2 72 128-199 227-300 (365)
79 PF05913 DUF871: Bacterial pro 55.0 46 0.00099 31.4 7.0 211 24-283 12-235 (357)
80 PTZ00413 lipoate synthase; Pro 54.5 1.9E+02 0.0042 27.6 10.9 160 22-200 176-373 (398)
81 COG0282 ackA Acetate kinase [E 54.3 1.2E+02 0.0025 28.9 9.3 120 132-282 163-290 (396)
82 TIGR03822 AblA_like_2 lysine-2 54.0 1.8E+02 0.004 26.8 12.0 109 91-202 120-240 (321)
83 PRK14461 ribosomal RNA large s 53.3 85 0.0018 29.7 8.4 87 113-201 231-353 (371)
84 TIGR02026 BchE magnesium-proto 53.2 1.4E+02 0.0031 29.4 10.5 67 122-190 319-392 (497)
85 TIGR02534 mucon_cyclo muconate 52.9 65 0.0014 30.3 7.8 74 128-201 226-301 (368)
86 PRK15108 biotin synthase; Prov 52.8 2E+02 0.0043 26.9 10.9 105 23-143 76-188 (345)
87 PRK05283 deoxyribose-phosphate 52.4 57 0.0012 29.2 6.8 78 24-112 144-227 (257)
88 COG0218 Predicted GTPase [Gene 52.1 1.5E+02 0.0033 25.4 10.0 112 8-137 78-197 (200)
89 PRK08208 coproporphyrinogen II 51.9 80 0.0017 30.5 8.4 61 89-151 204-275 (430)
90 TIGR00538 hemN oxygen-independ 51.7 70 0.0015 31.2 8.0 60 90-151 215-290 (455)
91 PRK00087 4-hydroxy-3-methylbut 51.4 1.8E+02 0.0039 29.8 11.2 44 237-281 222-271 (647)
92 PRK05692 hydroxymethylglutaryl 51.4 1.3E+02 0.0028 27.4 9.2 103 89-194 22-138 (287)
93 PRK06582 coproporphyrinogen II 51.3 82 0.0018 30.1 8.3 60 89-150 173-249 (390)
94 COG1751 Uncharacterized conser 50.4 63 0.0014 26.4 6.1 74 23-109 11-85 (186)
95 PRK06424 transcription factor; 50.1 51 0.0011 26.7 5.7 82 178-260 22-110 (144)
96 PRK15072 bifunctional D-altron 50.0 1.5E+02 0.0032 28.4 9.8 83 111-197 232-316 (404)
97 PRK08599 coproporphyrinogen II 50.0 86 0.0019 29.6 8.2 60 89-150 163-239 (377)
98 COG2089 SpsE Sialic acid synth 49.3 2.2E+02 0.0048 26.4 11.0 115 23-156 87-221 (347)
99 cd07944 DRE_TIM_HOA_like 4-hyd 49.2 1.8E+02 0.0039 26.1 9.7 106 88-194 15-127 (266)
100 PF11020 DUF2610: Domain of un 49.1 43 0.00093 24.0 4.4 29 230-258 48-76 (82)
101 PRK05799 coproporphyrinogen II 48.8 1.2E+02 0.0025 28.6 8.9 27 90-117 163-189 (374)
102 TIGR00676 fadh2 5,10-methylene 48.5 2E+02 0.0044 25.8 14.3 156 26-202 15-192 (272)
103 cd03327 MR_like_2 Mandelate ra 48.4 2.3E+02 0.005 26.3 14.6 152 24-196 120-280 (341)
104 PRK13803 bifunctional phosphor 48.2 82 0.0018 32.1 8.1 76 91-171 12-88 (610)
105 PRK14017 galactonate dehydrata 47.6 1.5E+02 0.0032 28.1 9.4 84 111-198 203-288 (382)
106 cd00405 PRAI Phosphoribosylant 46.9 1.3E+02 0.0028 25.5 8.2 39 111-153 74-112 (203)
107 COG1121 ZnuC ABC-type Mn/Zn tr 46.8 78 0.0017 28.3 6.8 66 89-157 111-205 (254)
108 smart00642 Aamy Alpha-amylase 46.7 33 0.00071 28.4 4.3 22 178-199 72-93 (166)
109 PF14871 GHL6: Hypothetical gl 46.5 33 0.00072 27.3 4.1 25 175-199 43-67 (132)
110 cd07943 DRE_TIM_HOA 4-hydroxy- 45.9 2.2E+02 0.0047 25.3 10.2 104 89-194 18-130 (263)
111 cd02070 corrinoid_protein_B12- 45.8 1.9E+02 0.0041 24.6 10.9 145 24-190 9-162 (201)
112 cd06543 GH18_PF-ChiA-like PF-C 45.6 2.4E+02 0.0052 25.7 14.9 182 7-201 71-265 (294)
113 cd07943 DRE_TIM_HOA 4-hydroxy- 45.5 2.2E+02 0.0048 25.3 15.4 116 21-157 17-146 (263)
114 PRK07259 dihydroorotate dehydr 45.5 2.4E+02 0.0051 25.6 11.2 153 24-190 102-289 (301)
115 PRK09061 D-glutamate deacylase 45.5 1.9E+02 0.0042 28.6 10.1 113 27-147 170-283 (509)
116 PF10668 Phage_terminase: Phag 44.9 47 0.001 22.6 3.9 26 229-254 9-40 (60)
117 PRK02901 O-succinylbenzoate sy 44.1 2E+02 0.0044 26.7 9.5 72 129-202 173-245 (327)
118 COG4130 Predicted sugar epimer 43.7 1.5E+02 0.0034 25.8 7.7 80 150-248 50-136 (272)
119 PRK14457 ribosomal RNA large s 43.3 2.8E+02 0.0062 26.0 14.1 136 66-202 99-266 (345)
120 PRK05414 urocanate hydratase; 43.2 62 0.0013 31.8 5.9 117 30-160 116-254 (556)
121 TIGR01496 DHPS dihydropteroate 43.2 2.4E+02 0.0053 25.1 13.0 99 90-196 20-125 (257)
122 TIGR01228 hutU urocanate hydra 42.4 63 0.0014 31.6 5.8 117 30-160 107-245 (545)
123 COG2102 Predicted ATPases of P 42.4 56 0.0012 28.5 5.0 100 124-251 74-177 (223)
124 TIGR01927 menC_gamma/gm+ o-suc 42.0 2.1E+02 0.0046 26.1 9.3 86 111-202 183-270 (307)
125 PRK09427 bifunctional indole-3 41.9 60 0.0013 31.7 5.8 65 103-171 273-338 (454)
126 PF07994 NAD_binding_5: Myo-in 41.9 1.4E+02 0.003 27.3 7.8 148 91-278 130-284 (295)
127 COG2069 CdhD CO dehydrogenase/ 41.8 2.8E+02 0.0061 25.5 9.8 93 103-200 160-262 (403)
128 COG1151 6Fe-6S prismane cluste 41.3 1.2E+02 0.0026 30.3 7.6 51 93-146 360-413 (576)
129 PF00682 HMGL-like: HMGL-like 41.1 1.1E+02 0.0025 26.5 7.1 98 89-192 10-124 (237)
130 cd00945 Aldolase_Class_I Class 40.8 2.1E+02 0.0044 23.6 9.6 97 24-137 11-108 (201)
131 PRK09240 thiH thiamine biosynt 40.4 3.2E+02 0.007 25.8 11.4 132 23-175 104-262 (371)
132 TIGR00126 deoC deoxyribose-pho 40.3 2.4E+02 0.0053 24.3 10.8 99 23-137 15-113 (211)
133 PRK08195 4-hyroxy-2-oxovalerat 40.3 3.1E+02 0.0068 25.5 16.5 27 20-46 19-45 (337)
134 PF05690 ThiG: Thiazole biosyn 40.1 1.5E+02 0.0033 26.2 7.3 111 6-140 9-124 (247)
135 TIGR02082 metH 5-methyltetrahy 40.0 5.7E+02 0.012 28.5 13.4 122 105-252 379-505 (1178)
136 PRK12928 lipoyl synthase; Prov 39.9 2.8E+02 0.006 25.3 9.5 161 23-198 87-280 (290)
137 PF00809 Pterin_bind: Pterin b 39.7 65 0.0014 27.7 5.2 89 104-198 29-125 (210)
138 cd01974 Nitrogenase_MoFe_beta 39.6 3.6E+02 0.0078 26.0 12.3 109 46-167 64-192 (435)
139 TIGR00048 radical SAM enzyme, 39.6 89 0.0019 29.4 6.4 88 113-200 218-333 (355)
140 PRK08195 4-hyroxy-2-oxovalerat 39.3 3E+02 0.0065 25.7 9.8 103 88-195 20-134 (337)
141 TIGR03597 GTPase_YqeH ribosome 38.8 2.7E+02 0.0059 26.1 9.6 120 23-154 48-170 (360)
142 PRK01045 ispH 4-hydroxy-3-meth 38.2 2.3E+02 0.005 26.0 8.6 44 237-281 226-275 (298)
143 cd01297 D-aminoacylase D-amino 38.1 3.6E+02 0.0079 25.7 11.5 103 26-140 167-275 (415)
144 COG0135 TrpF Phosphoribosylant 38.0 1.3E+02 0.0029 25.9 6.7 99 24-149 11-110 (208)
145 PRK01313 rnpA ribonuclease P; 37.8 1.7E+02 0.0036 23.2 6.8 62 66-137 47-113 (129)
146 PRK09249 coproporphyrinogen II 37.7 1.7E+02 0.0037 28.4 8.3 25 91-116 216-240 (453)
147 TIGR02311 HpaI 2,4-dihydroxyhe 37.5 2.9E+02 0.0064 24.4 10.1 63 132-195 3-68 (249)
148 TIGR00216 ispH_lytB (E)-4-hydr 37.2 1.6E+02 0.0035 26.7 7.4 44 237-281 224-273 (280)
149 cd03325 D-galactonate_dehydrat 35.9 3.7E+02 0.0079 25.1 15.7 152 24-196 123-285 (352)
150 TIGR03247 glucar-dehydr glucar 35.8 4.2E+02 0.0091 25.7 14.2 86 113-198 252-338 (441)
151 PRK02083 imidazole glycerol ph 35.8 3.1E+02 0.0066 24.1 12.7 86 104-192 163-251 (253)
152 PRK15440 L-rhamnonate dehydrat 35.5 1.7E+02 0.0036 28.0 7.6 68 128-195 247-318 (394)
153 PTZ00081 enolase; Provisional 35.2 3.3E+02 0.0071 26.5 9.6 96 90-194 281-381 (439)
154 cd03321 mandelate_racemase Man 35.2 3.8E+02 0.0082 25.0 13.8 151 24-195 141-294 (355)
155 PRK03459 rnpA ribonuclease P; 34.9 2.1E+02 0.0045 22.4 6.9 62 66-137 48-113 (122)
156 PRK12360 4-hydroxy-3-methylbut 34.7 2.5E+02 0.0054 25.5 8.2 44 237-281 225-274 (281)
157 PRK06361 hypothetical protein; 34.7 2.9E+02 0.0062 23.5 19.4 185 27-258 11-201 (212)
158 cd02801 DUS_like_FMN Dihydrour 34.6 2.9E+02 0.0064 23.6 9.5 132 24-169 65-213 (231)
159 TIGR03217 4OH_2_O_val_ald 4-hy 34.5 3.5E+02 0.0076 25.2 9.5 104 88-194 19-132 (333)
160 PF11372 DUF3173: Domain of un 34.5 42 0.00091 22.7 2.4 22 24-45 15-40 (59)
161 TIGR00539 hemN_rel putative ox 34.4 2.7E+02 0.0058 26.1 8.8 28 89-117 163-190 (360)
162 cd03320 OSBS o-Succinylbenzoat 34.3 1.9E+02 0.004 25.7 7.4 86 111-201 153-239 (263)
163 TIGR01378 thi_PPkinase thiamin 33.9 1.5E+02 0.0033 25.3 6.5 38 247-284 71-110 (203)
164 TIGR00035 asp_race aspartate r 33.8 2.2E+02 0.0047 24.7 7.6 62 91-153 15-88 (229)
165 TIGR02026 BchE magnesium-proto 33.8 3.3E+02 0.0072 26.8 9.7 103 89-195 221-342 (497)
166 PRK06015 keto-hydroxyglutarate 33.6 3.1E+02 0.0067 23.5 9.4 88 91-194 14-102 (201)
167 cd01965 Nitrogenase_MoFe_beta_ 33.6 4.4E+02 0.0095 25.3 12.4 104 47-167 61-187 (428)
168 PRK05588 histidinol-phosphatas 33.5 3.4E+02 0.0073 23.9 10.7 145 26-194 16-184 (255)
169 PF01118 Semialdhyde_dh: Semia 33.2 57 0.0012 25.1 3.5 27 24-50 75-101 (121)
170 TIGR02090 LEU1_arch isopropylm 33.2 4.2E+02 0.009 25.0 9.9 27 21-47 17-43 (363)
171 TIGR00381 cdhD CO dehydrogenas 33.0 4.4E+02 0.0096 25.2 12.4 104 93-202 128-253 (389)
172 PLN00191 enolase 33.0 2.9E+02 0.0064 27.0 9.0 96 90-194 295-393 (457)
173 cd07948 DRE_TIM_HCS Saccharomy 32.8 3.6E+02 0.0078 24.1 12.1 105 22-146 18-132 (262)
174 PF01402 RHH_1: Ribbon-helix-h 32.6 70 0.0015 19.0 3.1 21 234-254 9-29 (39)
175 PRK13352 thiamine biosynthesis 32.5 1.3E+02 0.0028 28.9 6.1 119 128-281 123-246 (431)
176 cd07937 DRE_TIM_PC_TC_5S Pyruv 32.5 3.7E+02 0.008 24.1 15.6 124 22-157 17-154 (275)
177 PRK14459 ribosomal RNA large s 32.5 3.3E+02 0.0071 25.9 8.9 90 112-201 240-360 (373)
178 PF02401 LYTB: LytB protein; 32.3 1.1E+02 0.0023 27.9 5.4 44 237-281 225-274 (281)
179 PRK03031 rnpA ribonuclease P; 32.1 2.3E+02 0.005 22.0 6.7 63 67-138 48-114 (122)
180 PRK00077 eno enolase; Provisio 32.0 3.8E+02 0.0081 25.9 9.5 96 90-194 261-361 (425)
181 cd01301 rDP_like renal dipepti 31.8 2.6E+02 0.0056 25.7 8.0 107 26-148 154-263 (309)
182 COG0274 DeoC Deoxyribose-phosp 31.8 2.7E+02 0.0059 24.4 7.6 75 24-110 138-213 (228)
183 TIGR03217 4OH_2_O_val_ald 4-hy 31.6 4.3E+02 0.0093 24.6 16.6 26 21-46 19-44 (333)
184 PRK14466 ribosomal RNA large s 31.6 2.2E+02 0.0048 26.7 7.5 103 66-172 101-215 (345)
185 PRK04390 rnpA ribonuclease P; 31.4 2.5E+02 0.0054 21.8 7.0 63 66-137 44-109 (120)
186 PRK14457 ribosomal RNA large s 31.3 4.5E+02 0.0096 24.7 15.6 106 95-200 196-330 (345)
187 PRK14463 ribosomal RNA large s 31.1 3.8E+02 0.0083 25.1 9.2 92 66-159 101-203 (349)
188 TIGR01430 aden_deam adenosine 31.1 4.1E+02 0.009 24.2 13.3 104 91-199 138-242 (324)
189 PRK00499 rnpA ribonuclease P; 30.9 2.4E+02 0.0053 21.5 6.8 63 66-138 38-104 (114)
190 cd00959 DeoC 2-deoxyribose-5-p 30.7 2.4E+02 0.0053 23.9 7.3 70 24-108 129-202 (203)
191 PRK09490 metH B12-dependent me 30.6 8.1E+02 0.018 27.5 13.2 118 105-249 395-518 (1229)
192 PRK01492 rnpA ribonuclease P; 30.5 2.6E+02 0.0056 21.7 6.7 60 67-135 47-113 (118)
193 cd02810 DHOD_DHPD_FMN Dihydroo 30.3 4E+02 0.0087 23.8 11.4 130 24-168 109-271 (289)
194 cd07948 DRE_TIM_HCS Saccharomy 30.2 3.5E+02 0.0075 24.2 8.4 99 89-195 18-131 (262)
195 PLN02746 hydroxymethylglutaryl 30.1 4.7E+02 0.01 24.6 11.1 99 89-194 64-180 (347)
196 cd03329 MR_like_4 Mandelate ra 30.1 4.7E+02 0.01 24.5 15.0 150 24-196 143-299 (368)
197 TIGR00542 hxl6Piso_put hexulos 30.0 2.5E+02 0.0055 24.9 7.6 51 179-248 97-147 (279)
198 cd03174 DRE_TIM_metallolyase D 29.7 3.8E+02 0.0083 23.4 13.8 25 23-47 16-40 (265)
199 PLN02389 biotin synthase 29.7 5E+02 0.011 24.7 10.5 101 23-140 116-227 (379)
200 PRK01903 rnpA ribonuclease P; 29.6 2.6E+02 0.0056 22.2 6.7 47 91-137 66-128 (133)
201 PRK07094 biotin synthase; Prov 29.5 2.8E+02 0.0062 25.3 8.1 22 23-44 70-91 (323)
202 PF01175 Urocanase: Urocanase; 29.4 1.1E+02 0.0024 30.1 5.3 117 30-160 106-244 (546)
203 PRK04930 glutathione-regulated 29.4 3.5E+02 0.0075 22.8 8.6 83 25-123 77-160 (184)
204 cd02930 DCR_FMN 2,4-dienoyl-Co 29.3 4.8E+02 0.01 24.4 13.2 16 30-45 141-156 (353)
205 TIGR03821 AblA_like_1 lysine-2 29.2 4.6E+02 0.01 24.2 10.8 92 111-202 143-246 (321)
206 PF14502 HTH_41: Helix-turn-he 28.9 71 0.0015 20.6 2.6 30 236-265 6-37 (48)
207 PRK05904 coproporphyrinogen II 28.8 3.8E+02 0.0083 25.1 8.8 27 90-117 167-193 (353)
208 PF01904 DUF72: Protein of unk 28.5 4E+02 0.0086 23.2 11.2 136 31-194 11-147 (230)
209 PRK13210 putative L-xylulose 5 28.3 2.9E+02 0.0062 24.5 7.7 51 179-248 97-147 (284)
210 PF09989 DUF2229: CoA enzyme a 28.3 3.6E+02 0.0078 23.4 8.0 35 162-196 185-219 (221)
211 TIGR03471 HpnJ hopanoid biosyn 28.1 5.1E+02 0.011 25.2 9.9 154 24-190 228-392 (472)
212 KOG0059 Lipid exporter ABCA1 a 28.1 2.7E+02 0.0059 29.8 8.5 71 88-160 668-767 (885)
213 PF00697 PRAI: N-(5'phosphorib 28.1 52 0.0011 28.0 2.7 67 102-172 14-81 (197)
214 TIGR01060 eno phosphopyruvate 28.1 5.5E+02 0.012 24.8 10.0 96 90-194 262-362 (425)
215 PHA02128 hypothetical protein 27.9 1.9E+02 0.0041 22.0 5.2 70 126-195 60-150 (151)
216 PF13407 Peripla_BP_4: Peripla 27.9 2E+02 0.0043 24.8 6.5 50 93-148 14-63 (257)
217 PRK09856 fructoselysine 3-epim 27.9 3.1E+02 0.0068 24.1 7.9 23 179-201 50-72 (275)
218 PLN02489 homocysteine S-methyl 27.7 5E+02 0.011 24.1 22.3 170 24-199 53-276 (335)
219 cd03313 enolase Enolase: Enola 27.7 5.5E+02 0.012 24.6 10.2 96 90-194 261-361 (408)
220 cd00885 cinA Competence-damage 27.3 1E+02 0.0022 25.6 4.1 46 30-79 22-69 (170)
221 PF02525 Flavodoxin_2: Flavodo 26.9 2.8E+02 0.0061 23.2 7.0 86 24-120 93-180 (199)
222 PRK14456 ribosomal RNA large s 26.2 3E+02 0.0065 26.1 7.5 88 113-200 237-353 (368)
223 PLN02540 methylenetetrahydrofo 26.1 6.9E+02 0.015 25.2 14.0 150 26-191 15-197 (565)
224 TIGR03820 lys_2_3_AblA lysine- 26.0 6.1E+02 0.013 24.5 11.5 122 23-159 138-270 (417)
225 COG0820 Predicted Fe-S-cluster 26.0 4.5E+02 0.0098 24.7 8.4 94 66-159 99-207 (349)
226 COG0145 HyuA N-methylhydantoin 25.7 6.2E+02 0.014 26.2 10.2 100 22-124 135-246 (674)
227 PF05368 NmrA: NmrA-like famil 25.7 2.9E+02 0.0063 23.5 7.1 94 97-201 12-106 (233)
228 COG2949 SanA Uncharacterized m 25.6 4.5E+02 0.0098 22.9 8.7 98 94-197 77-181 (235)
229 COG2987 HutU Urocanate hydrata 25.5 1.1E+02 0.0023 29.8 4.3 101 52-166 148-261 (561)
230 smart00052 EAL Putative diguan 25.5 4.1E+02 0.0089 22.4 8.0 98 94-195 100-209 (241)
231 TIGR03569 NeuB_NnaB N-acetylne 25.4 5.6E+02 0.012 23.9 10.0 111 23-152 73-205 (329)
232 TIGR01278 DPOR_BchB light-inde 25.3 6.8E+02 0.015 24.8 13.3 99 54-166 69-192 (511)
233 PF04476 DUF556: Protein of un 25.2 4.8E+02 0.01 23.0 10.3 154 24-192 9-183 (235)
234 PRK05406 LamB/YcsF family prot 25.2 2E+02 0.0042 25.6 5.7 82 9-106 13-95 (246)
235 COG1099 Predicted metal-depend 25.2 4.8E+02 0.01 23.0 10.1 111 115-256 31-163 (254)
236 PRK10415 tRNA-dihydrouridine s 25.1 5.5E+02 0.012 23.7 12.2 136 24-172 75-227 (321)
237 cd08590 PI-PLCc_Rv2075c_like C 25.0 2.5E+02 0.0054 25.2 6.6 19 127-145 150-168 (267)
238 PRK04820 rnpA ribonuclease P; 24.9 3.7E+02 0.0081 21.7 7.0 63 67-138 49-114 (145)
239 PF10171 DUF2366: Uncharacteri 24.8 1.5E+02 0.0032 24.9 4.6 47 98-147 68-114 (173)
240 PRK03670 competence damage-ind 24.7 1.4E+02 0.003 26.7 4.8 64 28-100 22-87 (252)
241 PF02679 ComA: (2R)-phospho-3- 24.6 1.3E+02 0.0028 26.7 4.5 85 26-118 84-168 (244)
242 TIGR02402 trehalose_TreZ malto 24.4 1.1E+02 0.0024 30.6 4.5 22 178-199 162-183 (542)
243 PF04481 DUF561: Protein of un 24.3 3E+02 0.0064 24.1 6.4 105 24-139 25-145 (242)
244 COG0673 MviM Predicted dehydro 24.1 1.3E+02 0.0028 27.5 4.7 79 237-315 41-130 (342)
245 PF13167 GTP-bdg_N: GTP-bindin 24.0 38 0.00083 25.3 0.9 67 233-301 7-80 (95)
246 PRK14465 ribosomal RNA large s 24.0 5.1E+02 0.011 24.3 8.6 88 113-200 215-329 (342)
247 TIGR02351 thiH thiazole biosyn 24.0 5.4E+02 0.012 24.2 8.9 137 23-175 103-261 (366)
248 PRK05718 keto-hydroxyglutarate 23.9 4.8E+02 0.01 22.6 7.9 52 23-76 24-75 (212)
249 PF00072 Response_reg: Respons 23.7 1.9E+02 0.0041 20.9 4.9 64 105-171 38-103 (112)
250 PF01207 Dus: Dihydrouridine s 23.7 5.6E+02 0.012 23.4 8.8 133 24-168 64-212 (309)
251 cd00959 DeoC 2-deoxyribose-5-p 23.6 4.5E+02 0.0098 22.2 10.5 100 23-138 14-113 (203)
252 cd03317 NAAAR N-acylamino acid 23.6 5.9E+02 0.013 23.6 15.5 149 26-199 139-289 (354)
253 cd01320 ADA Adenosine deaminas 23.6 3.5E+02 0.0076 24.7 7.5 105 90-195 66-192 (325)
254 COG4626 Phage terminase-like p 23.6 2.9E+02 0.0062 27.7 7.0 73 123-198 410-485 (546)
255 PRK05458 guanosine 5'-monophos 23.5 2.7E+02 0.0058 26.0 6.5 125 61-194 16-145 (326)
256 PRK07531 bifunctional 3-hydrox 23.3 6.6E+02 0.014 24.7 9.7 125 109-258 79-218 (495)
257 PRK03170 dihydrodipicolinate s 23.3 5.5E+02 0.012 23.1 13.1 23 22-44 18-40 (292)
258 PF13518 HTH_28: Helix-turn-he 23.2 97 0.0021 19.4 2.7 22 238-260 14-35 (52)
259 PRK08776 cystathionine gamma-s 23.2 4.1E+02 0.0089 25.4 8.1 75 127-201 111-187 (405)
260 PRK11613 folP dihydropteroate 23.1 5.7E+02 0.012 23.2 10.5 99 91-196 36-140 (282)
261 PLN02428 lipoic acid synthase 23.1 6.1E+02 0.013 23.9 8.9 157 23-200 130-325 (349)
262 KOG2019 Metalloendoprotease HM 23.0 2.5E+02 0.0054 29.1 6.5 59 241-300 464-529 (998)
263 PF00356 LacI: Bacterial regul 23.0 74 0.0016 20.2 2.0 42 239-286 2-43 (46)
264 smart00148 PLCXc Phospholipase 22.9 85 0.0018 25.0 2.8 19 28-46 30-48 (135)
265 cd00408 DHDPS-like Dihydrodipi 22.8 5.4E+02 0.012 22.8 19.1 101 22-138 14-121 (281)
266 PRK10200 putative racemase; Pr 22.8 3.9E+02 0.0084 23.3 7.2 63 91-154 15-89 (230)
267 cd00019 AP2Ec AP endonuclease 22.7 3.5E+02 0.0077 23.9 7.2 17 179-195 88-104 (279)
268 PRK06740 histidinol-phosphatas 22.7 3.2E+02 0.007 25.3 7.0 23 26-48 61-83 (331)
269 TIGR03070 couple_hipB transcri 22.6 82 0.0018 20.0 2.3 22 237-258 5-26 (58)
270 TIGR00238 KamA family protein. 22.6 6.2E+02 0.013 23.4 8.9 103 25-140 144-251 (331)
271 PRK05571 ribose-5-phosphate is 22.5 4.3E+02 0.0092 21.5 10.9 99 89-196 8-108 (148)
272 PF07287 DUF1446: Protein of u 22.3 2E+02 0.0044 27.2 5.5 17 179-195 61-77 (362)
273 cd00248 Mth938-like Mth938-lik 22.3 2.3E+02 0.005 21.5 5.0 50 148-197 38-87 (109)
274 TIGR03849 arch_ComA phosphosul 22.2 2.5E+02 0.0054 24.8 5.8 97 97-194 12-118 (237)
275 PRK14466 ribosomal RNA large s 22.2 6.6E+02 0.014 23.6 9.3 88 113-200 210-325 (345)
276 PF04748 Polysacc_deac_2: Dive 22.2 5.1E+02 0.011 22.3 8.1 52 23-77 71-128 (213)
277 COG2052 Uncharacterized protei 22.1 63 0.0014 22.9 1.6 47 1-50 1-49 (89)
278 PRK12569 hypothetical protein; 22.0 2.1E+02 0.0045 25.5 5.2 84 9-106 14-98 (245)
279 COG4943 Predicted signal trans 21.9 5.1E+02 0.011 25.6 8.1 125 55-195 341-477 (524)
280 cd03328 MR_like_3 Mandelate ra 21.8 6.6E+02 0.014 23.4 13.9 150 24-196 138-293 (352)
281 cd00950 DHDPS Dihydrodipicolin 21.6 5.8E+02 0.013 22.7 14.5 28 22-49 17-44 (284)
282 PRK15108 biotin synthase; Prov 21.1 6.8E+02 0.015 23.3 10.1 106 90-199 76-194 (345)
283 CHL00040 rbcL ribulose-1,5-bis 21.1 6.9E+02 0.015 24.6 9.1 108 89-200 179-299 (475)
284 PF05049 IIGP: Interferon-indu 21.1 2.9E+02 0.0062 26.3 6.3 96 37-134 109-215 (376)
285 cd08583 PI-PLCc_GDPD_SF_unchar 21.1 5.4E+02 0.012 22.2 8.9 22 24-45 13-34 (237)
286 PF11590 DNAPolymera_Pol: DNA 20.9 86 0.0019 19.3 1.8 33 4-37 6-38 (41)
287 cd03324 rTSbeta_L-fuconate_deh 20.9 7.5E+02 0.016 23.8 14.4 152 24-196 196-352 (415)
288 COG3215 PilZ Tfp pilus assembl 20.8 1.4E+02 0.003 22.7 3.3 53 26-80 20-72 (117)
289 PF01476 LysM: LysM domain; I 20.7 1E+02 0.0022 18.6 2.3 18 237-254 7-24 (44)
290 COG0626 MetC Cystathionine bet 20.6 4.7E+02 0.01 25.1 7.7 82 125-206 112-196 (396)
291 COG2179 Predicted hydrolase of 20.6 5E+02 0.011 21.7 6.8 84 102-191 22-109 (175)
292 PF01244 Peptidase_M19: Membra 20.5 1.3E+02 0.0029 27.7 4.0 107 26-148 160-271 (320)
293 cd01966 Nitrogenase_NifN_1 Nit 20.4 7.7E+02 0.017 23.7 10.6 106 48-166 62-188 (417)
294 PRK06256 biotin synthase; Vali 20.4 6.7E+02 0.015 23.0 9.0 108 23-146 91-207 (336)
295 cd08556 GDPD Glycerophosphodie 20.2 4.7E+02 0.01 21.2 7.3 23 24-46 11-33 (189)
296 TIGR00737 nifR3_yhdG putative 20.1 6.7E+02 0.015 22.9 12.2 138 24-173 73-226 (319)
297 PRK08621 galactose-6-phosphate 20.1 4.7E+02 0.01 21.1 10.1 96 89-196 8-105 (142)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=3.8e-68 Score=487.77 Aligned_cols=298 Identities=43% Similarity=0.675 Sum_probs=266.0
Q ss_pred CCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCC-CCcEEEEeeeccc
Q 020083 1 MVLQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLP-REKVQIATKFGVV 79 (331)
Q Consensus 1 ~~~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~-R~~~~I~tK~~~~ 79 (331)
++++||+||||||.+|+.+. ..+.+++.++|++|+++||||||||+.||.|.||++||++|+... |++++|+||++..
T Consensus 9 ~gl~vs~lglG~~~~g~~~~-~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vvIaTK~g~~ 87 (316)
T COG0667 9 SGLKVSPLGLGTMTLGGDTD-DEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVVIATKVGYR 87 (316)
T ss_pred CCceecceeeeccccCCCCC-chhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEEEEEeeccC
Confidence 47899999999999987522 235557888999999999999999999999999999999999864 8999999999987
Q ss_pred CCC-CCCcccCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCHHHHHHHh
Q 020083 80 GLR-DNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAH 158 (331)
Q Consensus 80 ~~~-~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~ 158 (331)
... .+....++++++|+++++.||+|||||||||||+||||...+.++++++|.+|+++|+||+||+||++++++++++
T Consensus 88 ~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~~~~i~~a~ 167 (316)
T COG0667 88 PGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYSAEQIAEAL 167 (316)
T ss_pred CCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHH
Confidence 643 1111357899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCceEEeccccccccchhhhhHHHHHHhCCeeeecccCCccccCCCCccCCCCCCccccc-CcCCCCcchhhHHHHH
Q 020083 159 GV-HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHF-FPRYKGENLDRNKNIY 236 (331)
Q Consensus 159 ~~-~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 236 (331)
+. .+++++|.+||+++|..+.+++++|+++||++++|+||++|+|+++.... +. +.+.. .+.|..+..+......
T Consensus 168 ~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~--~~-~~r~~~~~~~~~~~~~~~~~~~ 244 (316)
T COG0667 168 AVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPG--PE-GSRASELPRFQRELTERGLAIL 244 (316)
T ss_pred HhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCC--cc-hhhccccccchhhhhHHHHHHH
Confidence 99 59999999999999887778999999999999999999999999994432 11 22222 3566667788899999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCCeEeecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhCCC
Q 020083 237 FRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDAVPI 302 (331)
Q Consensus 237 ~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~~L~~~~~~~i~~~~~~ 302 (331)
+.++++|+++|+||+|+||+|++++|.+++||+|+++++||++|+++++..|++++++.|++....
T Consensus 245 ~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~~~~~l~~~~~~ 310 (316)
T COG0667 245 RALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALDEISAE 310 (316)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999988764
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=5.5e-67 Score=471.01 Aligned_cols=305 Identities=45% Similarity=0.708 Sum_probs=272.7
Q ss_pred CccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcC--CCCcEEEEeeeccc
Q 020083 2 VLQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKML--PREKVQIATKFGVV 79 (331)
Q Consensus 2 ~~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~--~R~~~~I~tK~~~~ 79 (331)
+++||++|||||.+.. |+...+.++|.++|.+|+++|+||||||++||.|.||.++|+++++. +|+++||+||++..
T Consensus 21 gl~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~~vviaTK~~~~ 99 (336)
T KOG1575|consen 21 GLKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRDKVVIATKFGFD 99 (336)
T ss_pred Cceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCCcEEEEEEEecc
Confidence 6899999999985543 44457899999999999999999999999999999999999999985 79999999999877
Q ss_pred CCCCCCcccCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCHHHHHHHhc
Q 020083 80 GLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHG 159 (331)
Q Consensus 80 ~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~ 159 (331)
... ......++..+...++.|++|||++||||||+||+|+..++++++++|.+++++|+||+||+|+++++++++++.
T Consensus 100 ~~~--~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~ 177 (336)
T KOG1575|consen 100 YGG--ETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSEWSAEEIREAHA 177 (336)
T ss_pred CCC--cCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEeccCCHHHHHHHHH
Confidence 621 114567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--ceEEeccccccccchh-hhhHHHHHHhCCeeeecccCCccccCCC-CccCCCCCCccccc----CcCCCCcchhh
Q 020083 160 VHP--ITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGGK-AVVESVPADSILHF----FPRYKGENLDR 231 (331)
Q Consensus 160 ~~~--~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~ 231 (331)
..+ +.++|++||+++|+.+ .++++.|++.||++++||||++|+|+++ ...++.+.++.+.. .+++... +.
T Consensus 178 ~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~~~~~~~~~~~~~~--~~ 255 (336)
T KOG1575|consen 178 VAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGDKRFQFLGLSPQTEEG--DK 255 (336)
T ss_pred hcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCcccccccccccccccccccccccchh--hh
Confidence 877 9999999999999854 5699999999999999999999999999 54455665554322 2233222 56
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeEeecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhCCCCccCCCCCc
Q 020083 232 NKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDAVPIEEVAGDRDP 311 (331)
Q Consensus 232 ~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~~L~~~~~~~i~~~~~~~~~~~~~~~ 311 (331)
+...++.+.++|+++|+|++|+||+|+++++.++.||+|+++++||+||++|+++.|+++++.+|+++.+...++++.++
T Consensus 256 ~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~Lt~e~~~~l~~~~~~~~~~~~~~~ 335 (336)
T KOG1575|consen 256 QKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVKLTPEEIKELEEIIDKILGFGPRSI 335 (336)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhccCCHHHHHHHHHhhccccCcCCCCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999998888888765
No 3
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=4e-61 Score=444.36 Aligned_cols=293 Identities=29% Similarity=0.451 Sum_probs=245.0
Q ss_pred CccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcC--CCCcEEEEeeeccc
Q 020083 2 VLQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKML--PREKVQIATKFGVV 79 (331)
Q Consensus 2 ~~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~--~R~~~~I~tK~~~~ 79 (331)
+++||+||||||+++ |...+.+++.++|++|+++|||+||||+.||.|.||++||++|+.. +|++++|+||+++.
T Consensus 8 g~~vs~lglGt~~~~---g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~iaTK~~~~ 84 (317)
T TIGR01293 8 GLRVSCLGLGTWVTF---GGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVITTKIFWG 84 (317)
T ss_pred CCeecceeecCCccC---CCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEEEeeeccC
Confidence 689999999999752 2335778999999999999999999999999999999999999853 69999999998643
Q ss_pred CCCCCCcccCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCHHHHHHHhc
Q 020083 80 GLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHG 159 (331)
Q Consensus 80 ~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~ 159 (331)
.... ...+++++.+++++++||+||||||||+|++|||++..+++++|++|++|+++|+||+||+|||+++++.++..
T Consensus 85 ~~~~--~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~~l~~~~~ 162 (317)
T TIGR01293 85 GKAE--TERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSMEIMEAYS 162 (317)
T ss_pred CCCC--CCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHH
Confidence 1110 11356899999999999999999999999999999888899999999999999999999999999988877543
Q ss_pred C------CCceEEeccccccccch-hhhhHHHHHHhCCeeeecccCCccccCCCCccCCCCCCccccc--CcCCC----C
Q 020083 160 V------HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHF--FPRYK----G 226 (331)
Q Consensus 160 ~------~~~~~~q~~~n~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~--~~~~~----~ 226 (331)
. .+++++|.+||++++.. +.+++++|+++||++++|+||++|+|+++.... .+.+..... ...+. .
T Consensus 163 ~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~-~~~~~~~~~~~~~~~~~~~~~ 241 (317)
T TIGR01293 163 VARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSG-IPPYSRATLKGYQWLKDKILS 241 (317)
T ss_pred HHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCC-CCCcccccccccchhhhhhcc
Confidence 2 46789999999999873 568999999999999999999999999984322 222111100 00111 1
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeEeecCCCCHHHHHHHHhccCC--CCCHHHHHHHHhhC
Q 020083 227 ENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRI--KLTKEDLKEISDAV 300 (331)
Q Consensus 227 ~~~~~~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~--~L~~~~~~~i~~~~ 300 (331)
.........++.|.++|+++|+|++|+||+|++++|+++++|+|+++++||++|+++++. +||+++++.|++++
T Consensus 242 ~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~~Ls~e~~~~l~~~~ 317 (317)
T TIGR01293 242 EEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLPKLSSSIIHEIDSIL 317 (317)
T ss_pred hhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccCCCCHHHHHHHHhhC
Confidence 222345667789999999999999999999999999999999999999999999999987 99999999999763
No 4
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=9.6e-60 Score=440.17 Aligned_cols=296 Identities=30% Similarity=0.422 Sum_probs=245.9
Q ss_pred CccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcC-------CChHHHHHHHHhhcC-CCCcEEEE
Q 020083 2 VLQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYG-------QNANETLLGKAFKML-PREKVQIA 73 (331)
Q Consensus 2 ~~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg-------~g~sE~~lG~~L~~~-~R~~~~I~ 73 (331)
+++||+||||||++|. ..+.+++.++|++|+++||||||||+.|| .|.||+.||++|+.. .|++++|+
T Consensus 10 ~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~~~R~~v~i~ 85 (346)
T PRK10625 10 SLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKRGSREKLIIA 85 (346)
T ss_pred CCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhcCCcceEEEE
Confidence 6899999999999864 24678899999999999999999999998 488999999999853 69999999
Q ss_pred eeecccCCC-CCC--cccCCChHHHHHHHHHHHHHcCCCcccEEEeccCCC-----------------CCCHHHHHHHHH
Q 020083 74 TKFGVVGLR-DNG--VIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-----------------SVPIEETIGEMK 133 (331)
Q Consensus 74 tK~~~~~~~-~~~--~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~-----------------~~~~~~~~~~l~ 133 (331)
||++..... +.. ...+++++.+++++++||+|||+||||||++|||+. ..+++++|++|+
T Consensus 86 TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~ 165 (346)
T PRK10625 86 SKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLETLDALA 165 (346)
T ss_pred cccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCCHHHHHHHHH
Confidence 999642211 000 012568999999999999999999999999999975 246789999999
Q ss_pred HHHHcCCcceeecCCCCHHHHHHHhc------CCCceEEeccccccccchhhhhHHHHHHhCCeeeecccCCccccCCCC
Q 020083 134 KLVEEGKIKYIGLSEASPDTIRRAHG------VHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKA 207 (331)
Q Consensus 134 ~l~~~G~ir~iGvS~~~~~~l~~~~~------~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~ 207 (331)
+|+++|+||+||+|||+.++++++.. ...+.++|.+||++++..+.+++++|+++||++++|+||++|+|+++.
T Consensus 166 ~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL~~G~Ltg~~ 245 (346)
T PRK10625 166 EQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLAFGTLTGKY 245 (346)
T ss_pred HHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccccCeeccCCC
Confidence 99999999999999999988876543 245788999999999876678999999999999999999999999973
Q ss_pred ccCCCCCCcccccCcCCCCcchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeEeecCCCCHHHHHHHHhccCCC
Q 020083 208 VVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIK 287 (331)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~~ 287 (331)
.....+.+........|.....+......+.+.++|+++|+|++|+||+|++++|.|+++|+|+++++||++|+++++++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l~en~~a~~~~ 325 (346)
T PRK10625 246 LNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQLKTNIESLHLT 325 (346)
T ss_pred CCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHHHHHHhhccCC
Confidence 32222221111111222222224466778899999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhCC
Q 020083 288 LTKEDLKEISDAVP 301 (331)
Q Consensus 288 L~~~~~~~i~~~~~ 301 (331)
|++++++.|+++.+
T Consensus 326 L~~~~~~~l~~~~~ 339 (346)
T PRK10625 326 LSEEVLAEIEAVHQ 339 (346)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999864
No 5
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=1.5e-60 Score=421.81 Aligned_cols=249 Identities=33% Similarity=0.522 Sum_probs=225.4
Q ss_pred CccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcC--CCCcEEEEeeeccc
Q 020083 2 VLQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKML--PREKVQIATKFGVV 79 (331)
Q Consensus 2 ~~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~--~R~~~~I~tK~~~~ 79 (331)
+.+||.||||||++++ .+.+.+.|.+|++.|+|+||||..|| ||+.+|+++++. +|+++||+||++..
T Consensus 11 g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~ReelFittKvw~~ 80 (280)
T COG0656 11 GVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREELFITTKVWPS 80 (280)
T ss_pred CCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHHeEEEeecCCc
Confidence 4679999999999853 23389999999999999999999999 899999999984 89999999999876
Q ss_pred CCCCCCcccCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCC--CCHHHHHHHHHHHHHcCCcceeecCCCCHHHHHHH
Q 020083 80 GLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS--VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA 157 (331)
Q Consensus 80 ~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~--~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~ 157 (331)
+.+++.+.+++++||+|||+||||||++|||.+. ..+.++|++|++++++|+||+||||||+.++++++
T Consensus 81 ---------~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF~~~~L~~l 151 (280)
T COG0656 81 ---------DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNFGVEHLEEL 151 (280)
T ss_pred ---------cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeCCCHHHHHHH
Confidence 4478999999999999999999999999999763 33789999999999999999999999999999998
Q ss_pred hcC--CCceEEeccccccccchhhhhHHHHHHhCCeeeecccCCccc-cCCCCccCCCCCCcccccCcCCCCcchhhHHH
Q 020083 158 HGV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGF-FGGKAVVESVPADSILHFFPRYKGENLDRNKN 234 (331)
Q Consensus 158 ~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (331)
+.. ..+.++|++||++.++. +++++|+++||.+++||||++|. +...
T Consensus 152 ~~~~~~~p~~NQIe~hp~~~q~--el~~~~~~~gI~v~AysPL~~g~~l~~~---------------------------- 201 (280)
T COG0656 152 LSLAKVKPAVNQIEYHPYLRQP--ELLPFCQRHGIAVEAYSPLAKGGKLLDN---------------------------- 201 (280)
T ss_pred HHhcCCCCceEEEEeccCCCcH--HHHHHHHHcCCEEEEECCcccccccccC----------------------------
Confidence 876 44789999999999965 49999999999999999999653 3221
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeEeecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhCCCC
Q 020083 235 IYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDAVPIE 303 (331)
Q Consensus 235 ~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~~L~~~~~~~i~~~~~~~ 303 (331)
+.+.+||++||.|++|++|+|+++++ ++||+.+++++|+.||++++++.||++||+.|+++....
T Consensus 202 --~~l~~Ia~k~g~t~AQv~L~W~i~~g--v~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~ 266 (280)
T COG0656 202 --PVLAEIAKKYGKTPAQVALRWHIQRG--VIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGY 266 (280)
T ss_pred --hHHHHHHHHhCCCHHHHHHHHHHhCC--cEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhcccc
Confidence 38999999999999999999999999 899999999999999999999999999999999998754
No 6
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=2e-59 Score=437.39 Aligned_cols=296 Identities=27% Similarity=0.483 Sum_probs=244.5
Q ss_pred CccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCC--ChHHHHHHHHhhcC---CCCcEEEEeee
Q 020083 2 VLQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQ--NANETLLGKAFKML---PREKVQIATKF 76 (331)
Q Consensus 2 ~~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~--g~sE~~lG~~L~~~---~R~~~~I~tK~ 76 (331)
+++||+||||||+. +|...+.+++.++|++|+++|||+||||+.||. |.||+.||++|++. .|+++||+||+
T Consensus 22 g~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~~Rd~~~I~TK~ 98 (346)
T PRK09912 22 GLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKA 98 (346)
T ss_pred CcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccCCCCeEEEEEEe
Confidence 68999999999973 232336678899999999999999999999994 89999999999863 59999999999
Q ss_pred cccCCCCCCcccCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCHHHHHH
Q 020083 77 GVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRR 156 (331)
Q Consensus 77 ~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~ 156 (331)
|...... ......+++++++++++||+|||+||||+|++|+|++..++++++++|++|+++|+||+||||||+++++++
T Consensus 99 g~~~~~~-~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iGvSn~~~~~~~~ 177 (346)
T PRK09912 99 GYDMWPG-PYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQK 177 (346)
T ss_pred cccCCCC-cCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHH
Confidence 8531111 011246899999999999999999999999999999888899999999999999999999999999998876
Q ss_pred Hhc-----CCCceEEeccccccccchh-hhhHHHHHHhCCeeeecccCCccccCCCCccCCCCCCcccc----cCcCCCC
Q 020083 157 AHG-----VHPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILH----FFPRYKG 226 (331)
Q Consensus 157 ~~~-----~~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~----~~~~~~~ 226 (331)
+.. ..+++++|++||++++..+ .++++.|+++||++++|+||++|+|+++.... .+.+.... ....|.+
T Consensus 178 ~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~-~~~~~~~~~~~~~~~~~~~ 256 (346)
T PRK09912 178 MVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNG-IPQDSRMHREGNKVRGLTP 256 (346)
T ss_pred HHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCCC-CCCCccccccccchhhhch
Confidence 543 2367899999999998654 47999999999999999999999999973221 11111000 0011222
Q ss_pred cch-hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeEeecCCCCHHHHHHHHhcc-CCCCCHHHHHHHHhhCCC
Q 020083 227 ENL-DRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSL-RIKLTKEDLKEISDAVPI 302 (331)
Q Consensus 227 ~~~-~~~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~-~~~L~~~~~~~i~~~~~~ 302 (331)
... +......+.+.++|+++|+|++|+||+|++++|.+++||+|+++++||++|++++ .++|+++++++|+++++.
T Consensus 257 ~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 257 KMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQALNNLTFSTEELAQIDQHIAD 334 (346)
T ss_pred hhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhhcCCCCCHHHHHHHHHhhCc
Confidence 111 3445677899999999999999999999999999999999999999999999998 489999999999998754
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=4.9e-58 Score=423.35 Aligned_cols=279 Identities=29% Similarity=0.469 Sum_probs=238.4
Q ss_pred CccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcC--CCCcEEEEeeeccc
Q 020083 2 VLQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKML--PREKVQIATKFGVV 79 (331)
Q Consensus 2 ~~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~--~R~~~~I~tK~~~~ 79 (331)
+++||.||||||++|+.|+. .+.+++.++|++|+++|||+||||+.||.|.||+.+|++|+.. +|+++||+||++..
T Consensus 8 ~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I~TK~~~~ 86 (314)
T PLN02587 8 GLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVVSTKCGRY 86 (314)
T ss_pred CCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEEEeccccC
Confidence 68899999999999876653 4788999999999999999999999999999999999999863 69999999999853
Q ss_pred CCCCCCcccCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCC---CCHHHHHHHHHHHHHcCCcceeecCCCCHHHHHH
Q 020083 80 GLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS---VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRR 156 (331)
Q Consensus 80 ~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~---~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~ 156 (331)
... .+++++.+++++++||++||+||||+|++|+|+.. .+++++|++|++|+++||||+||+|||++++++.
T Consensus 87 ~~~-----~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~ 161 (314)
T PLN02587 87 GEG-----FDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLPLAIFTY 161 (314)
T ss_pred CCC-----CCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHH
Confidence 211 25689999999999999999999999999999742 3567899999999999999999999999988776
Q ss_pred HhcC---C--CceEEeccccccccchhhhhHHHHHHhCCeeeecccCCccccCCCCccCCCCCCcccccCcCCCCcchhh
Q 020083 157 AHGV---H--PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDR 231 (331)
Q Consensus 157 ~~~~---~--~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (331)
+... . .+..+|+.||+.++.. .+++++|+++||++++|+||++|+|+++..+. +.+ ..+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~-------------~~~-~~~~ 226 (314)
T PLN02587 162 VLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTENGPPE-------------WHP-APPE 226 (314)
T ss_pred HHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCCCCCC-------------CCC-CCHH
Confidence 6542 2 2334578999887643 58999999999999999999999999862110 111 1234
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeEeecCCCCHHHHHHHHhccC----CCCCHHHHHHHHhhCC
Q 020083 232 NKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLR----IKLTKEDLKEISDAVP 301 (331)
Q Consensus 232 ~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~----~~L~~~~~~~i~~~~~ 301 (331)
....++.+.++|+++|+|++|+||+|++++|.|++||+|+++++||++|+++.. .+|+++++++|+++..
T Consensus 227 ~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~~ 300 (314)
T PLN02587 227 LKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAILA 300 (314)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhhc
Confidence 566778899999999999999999999999999999999999999999999975 3799999999999875
No 8
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=1e-57 Score=416.39 Aligned_cols=268 Identities=26% Similarity=0.442 Sum_probs=234.0
Q ss_pred CccccccccccccCCC--CCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEeeeccc
Q 020083 2 VLQVSKLGLGCMNLSS--GYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVV 79 (331)
Q Consensus 2 ~~~vs~lglG~~~~~~--~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~ 79 (331)
+++||+||||||++|+ .||...+.+++.++|++|+++|||+||||+.||.|.+|+.||++|+. .|++++|+||++..
T Consensus 14 g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-~R~~~~i~TK~g~~ 92 (290)
T PRK10376 14 GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-YPDDLTIVTKVGAR 92 (290)
T ss_pred CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-CCCeEEEEeeeccc
Confidence 5789999999999975 36655578889999999999999999999999999999999999975 69999999999764
Q ss_pred CCCCCCcccCCChHHHHHHHHHHHHHcCCCcccEEEeccCCC-----CCCHHHHHHHHHHHHHcCCcceeecCCCCHHHH
Q 020083 80 GLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-----SVPIEETIGEMKKLVEEGKIKYIGLSEASPDTI 154 (331)
Q Consensus 80 ~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~-----~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l 154 (331)
.........+.+++.+++++++||+||||||||+|++|+++. ..+++++|++|++|+++||||+||+|||+++++
T Consensus 93 ~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l 172 (290)
T PRK10376 93 RGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGLSNVTPTQV 172 (290)
T ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEecCCCHHHH
Confidence 322111223568999999999999999999999999888521 235789999999999999999999999999999
Q ss_pred HHHhcCCCceEEeccccccccchhhhhHHHHHHhCCeeeecccCCccccCCCCccCCCCCCcccccCcCCCCcchhhHHH
Q 020083 155 RRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKN 234 (331)
Q Consensus 155 ~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (331)
+++....+++++|++||++++.. .+++++|+++||++++|+||+++.. +
T Consensus 173 ~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pL~g~~~--------------------~---------- 221 (290)
T PRK10376 173 AEARKIAEIVCVQNHYNLAHRAD-DALIDALARDGIAYVPFFPLGGFTP--------------------L---------- 221 (290)
T ss_pred HHHHhhCCeEEEecccCCCcCCh-HHHHHHHHHcCCEEEEeecCCCCCh--------------------h----------
Confidence 99988889999999999998763 5799999999999999999973210 0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeEeecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhCC
Q 020083 235 IYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDAVP 301 (331)
Q Consensus 235 ~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~~L~~~~~~~i~~~~~ 301 (331)
..+.+.++|+++|+|++|+||+|+++++.++++|+|+++++||++|+++++++|++++++.|+++.+
T Consensus 222 ~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~ 288 (290)
T PRK10376 222 QSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIAR 288 (290)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 0257899999999999999999999987778899999999999999999999999999999998865
No 9
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=2.7e-58 Score=419.51 Aligned_cols=276 Identities=37% Similarity=0.599 Sum_probs=234.0
Q ss_pred ccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhc--CCCCcEEEEeeecccCCCCC
Q 020083 7 KLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKM--LPREKVQIATKFGVVGLRDN 84 (331)
Q Consensus 7 ~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~--~~R~~~~I~tK~~~~~~~~~ 84 (331)
+||||||++|+. ..+.+++.++|+.|++.|||+||||+.||+|.||+.||++|++ .+|++++|+||+... .
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~----~ 73 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGD----G 73 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESS----S
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccccccccccccccccccc----c
Confidence 589999998763 4689999999999999999999999999999999999999998 489999999999221 1
Q ss_pred CcccCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCC-HHHHHHHHHHHHHcCCcceeecCCCCHHHHHHH--hcCC
Q 020083 85 GVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP-IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA--HGVH 161 (331)
Q Consensus 85 ~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~-~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~--~~~~ 161 (331)
.....++++.+++++++||++||+||||+|++|+|+.... .+++|++|++|+++|+||+||||||+++.++++ ....
T Consensus 74 ~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 153 (283)
T PF00248_consen 74 KPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSI 153 (283)
T ss_dssp STGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS
T ss_pred cccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccccccccccccc
Confidence 2234779999999999999999999999999999999988 999999999999999999999999999999998 6668
Q ss_pred CceEEeccccccccchhhhhHHHHHHhCCeeeecccCCccccCCCCcc-CCCCCCcccccCcCCCCcchhhHHHHHHHHH
Q 020083 162 PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVV-ESVPADSILHFFPRYKGENLDRNKNIYFRIE 240 (331)
Q Consensus 162 ~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (331)
+++++|++||++++....+++++|+++||++++|+|+++|+|+++... ...+..... .......+.+.
T Consensus 154 ~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~ 222 (283)
T PF00248_consen 154 PPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASL-----------RDAQELADALR 222 (283)
T ss_dssp -ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGS-----------STHGGGHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccCccccccccCCCccccccc-----------chhhhhhhhhh
Confidence 899999999999777778999999999999999999999999987222 222111100 00345567999
Q ss_pred HHHHHcCCCHHHHHHHHHHcCCCCeEeecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhC
Q 020083 241 NLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDAV 300 (331)
Q Consensus 241 ~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~~L~~~~~~~i~~~~ 300 (331)
++++++|+|++|+||+|+++++.+.+||+|+++++||++|+++++++||++++++|++++
T Consensus 223 ~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 223 ELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999874
No 10
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=2e-56 Score=407.58 Aligned_cols=274 Identities=41% Similarity=0.674 Sum_probs=244.0
Q ss_pred CccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCC-CCcEEEEeeecccC
Q 020083 2 VLQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLP-REKVQIATKFGVVG 80 (331)
Q Consensus 2 ~~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~-R~~~~I~tK~~~~~ 80 (331)
+++||+||||||+++..+ .+.+++.+++++|+++|||+||||+.||.|.||+.+|++|+..+ |++++|+||++...
T Consensus 8 g~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~tK~~~~~ 84 (285)
T cd06660 8 GLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIATKVGPRP 84 (285)
T ss_pred CceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEEeeecCCC
Confidence 689999999999987654 47789999999999999999999999999999999999999864 99999999998653
Q ss_pred CCCCCcccCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCC-HHHHHHHHHHHHHcCCcceeecCCCCHHHHHHHhc
Q 020083 81 LRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP-IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHG 159 (331)
Q Consensus 81 ~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~-~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~ 159 (331)
... .+++++.+++++++||++|++||||+|+||+|+.... ..++|++|++++++|+||+||+|+|+++.+.++..
T Consensus 85 ~~~----~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~ 160 (285)
T cd06660 85 GDG----RDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQLEEALA 160 (285)
T ss_pred CCC----CCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHHHHHHHHH
Confidence 211 3568999999999999999999999999999988766 89999999999999999999999999999999888
Q ss_pred C--CCceEEeccccccccchhhhhHHHHHHhCCeeeecccCCccccCCCCccCCCCCCcccccCcCCCCcchhhHHHHHH
Q 020083 160 V--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYF 237 (331)
Q Consensus 160 ~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (331)
. .+++++|++||++++....+++++|+++||++++|+||++|.++++......+. ......
T Consensus 161 ~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~-----------------~~~~~~ 223 (285)
T cd06660 161 AAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPP-----------------EGDLLE 223 (285)
T ss_pred hhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCC-----------------hhhHHH
Confidence 7 899999999999999765679999999999999999999999887622111100 011456
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCCeEeecCCCCHHHHHHHHhccCCCCCHHHHHHHHhh
Q 020083 238 RIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDA 299 (331)
Q Consensus 238 ~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~~L~~~~~~~i~~~ 299 (331)
.+..++++++++++|+||+|++++|.+++||+|+++++||++|+++...+|++++++.|+++
T Consensus 224 ~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 224 ALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 89999999999999999999999999999999999999999999999999999999999863
No 11
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=1.2e-56 Score=404.72 Aligned_cols=246 Identities=28% Similarity=0.427 Sum_probs=220.6
Q ss_pred ccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcC--CCCcEEEEeeecccC
Q 020083 3 LQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKML--PREKVQIATKFGVVG 80 (331)
Q Consensus 3 ~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~--~R~~~~I~tK~~~~~ 80 (331)
++||+||||||+++ .+++.++|++|+++|||+||||+.|| +|+.||++|+.. +|+++||+||++..
T Consensus 1 ~~vs~lglGt~~~~--------~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~- 68 (267)
T PRK11172 1 MSIPAFGLGTFRLK--------DQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWID- 68 (267)
T ss_pred CCCCCEeeEccccC--------hHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCC-
Confidence 47999999999863 36799999999999999999999999 699999999853 69999999998532
Q ss_pred CCCCCcccCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCC--CCHHHHHHHHHHHHHcCCcceeecCCCCHHHHHHHh
Q 020083 81 LRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS--VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAH 158 (331)
Q Consensus 81 ~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~--~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~ 158 (331)
..+++.+++++++||+|||+||||+|++|+|++. .+.+++|++|++++++||||+||+|||+.+++++++
T Consensus 69 --------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~ 140 (267)
T PRK11172 69 --------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAI 140 (267)
T ss_pred --------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHH
Confidence 3478999999999999999999999999999764 467899999999999999999999999999998876
Q ss_pred cC---CCceEEeccccccccchhhhhHHHHHHhCCeeeecccCCccccCCCCccCCCCCCcccccCcCCCCcchhhHHHH
Q 020083 159 GV---HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNI 235 (331)
Q Consensus 159 ~~---~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (331)
.. .+++++|++||++++. .+++++|+++||++++|+||++|.+...
T Consensus 141 ~~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~~~----------------------------- 189 (267)
T PRK11172 141 AAVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVLKD----------------------------- 189 (267)
T ss_pred HhcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCcccCC-----------------------------
Confidence 54 3679999999999874 6899999999999999999998864321
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCCeEeecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhCCC
Q 020083 236 YFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDAVPI 302 (331)
Q Consensus 236 ~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~~L~~~~~~~i~~~~~~ 302 (331)
+.+.++|+++|+|++|+||+|+++++ .+||+|+++++||++|+++++++||++++++|+++..+
T Consensus 190 -~~l~~~a~~~~~s~aqval~w~l~~~--~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~ 253 (267)
T PRK11172 190 -PVIARIAAKHNATPAQVILAWAMQLG--YSVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRN 253 (267)
T ss_pred -HHHHHHHHHhCCCHHHHHHHHHHhCC--CEeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccC
Confidence 26899999999999999999999997 57999999999999999999999999999999998653
No 12
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=1.1e-56 Score=409.08 Aligned_cols=269 Identities=19% Similarity=0.252 Sum_probs=230.4
Q ss_pred CCccccccccccccCCCC-------CCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEE
Q 020083 1 MVLQVSKLGLGCMNLSSG-------YSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIA 73 (331)
Q Consensus 1 ~~~~vs~lglG~~~~~~~-------~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~ 73 (331)
|+++||+||||||++|+. |+. ++.+++.++|+.|+++||||||||+.|| .||+.+|++|+...+++++|+
T Consensus 1 ~~~~vs~iglGt~~~g~~~~~~~~~~~~-~~~~ea~~~l~~A~~~Gin~~DTA~~YG--~SE~~lG~al~~~~~~~~~i~ 77 (292)
T PRK14863 1 MSSPVSKLGLAAAQFGLDPGSSSAPRGR-TPEAEARDILNIAARAGLSVLDASGLFG--RAETVLGQLIPRPVPFRVTLS 77 (292)
T ss_pred CCCcceeeeeeeeccCCCcccccCCCCC-CCHHHHHHHHHHHHHcCCCEEecchhhh--hHHHHHhhhhccCCceEeecc
Confidence 899999999999999864 343 5889999999999999999999999997 699999999975234678899
Q ss_pred eeecccCCCCCCcccCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCC-CCH-HHHHHHHHHHHHcCCcceeecCCCCH
Q 020083 74 TKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPI-EETIGEMKKLVEEGKIKYIGLSEASP 151 (331)
Q Consensus 74 tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~-~~~-~~~~~~l~~l~~~G~ir~iGvS~~~~ 151 (331)
||.. +.+++.+++++++||+|||+||||+|++|+|++. .+. +++|++|++|+++||||+||+|||++
T Consensus 78 tk~~-----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~ 146 (292)
T PRK14863 78 TVRA-----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHAS 146 (292)
T ss_pred cccc-----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCH
Confidence 9852 2368999999999999999999999999999763 333 67899999999999999999999999
Q ss_pred HHHHHHhcCCCceEEeccccccccchh-hhhHHHHHHhCCeeeecccCCccccCCCCccCCCCCCcccccCcCCCCcchh
Q 020083 152 DTIRRAHGVHPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLD 230 (331)
Q Consensus 152 ~~l~~~~~~~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (331)
+++..+....+++++|++||++++..+ .+++++|+++||++++|+||++|+|++... ..+ . .+.
T Consensus 147 ~~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~--~~~--------~-----~~~ 211 (292)
T PRK14863 147 DDPVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPD--RVP--------A-----QLK 211 (292)
T ss_pred HHHHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcc--cCc--------c-----chh
Confidence 998888777789999999999998654 469999999999999999999999975311 010 0 111
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeEeecCCCCHHHHHHHHhccCCCCCHHHHHHHHh
Q 020083 231 RNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISD 298 (331)
Q Consensus 231 ~~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~~L~~~~~~~i~~ 298 (331)
.....+..+.+++.+.++|++|+||+|++++|.|+++|+|+++++||++|+++.+.+++++.+++|..
T Consensus 212 ~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~ 279 (292)
T PRK14863 212 GASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAI 279 (292)
T ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccC
Confidence 22345567888888999999999999999999999999999999999999999998999988887753
No 13
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=7.4e-55 Score=385.50 Aligned_cols=254 Identities=31% Similarity=0.479 Sum_probs=225.9
Q ss_pred CCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcC------CCCcEEEEe
Q 020083 1 MVLQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKML------PREKVQIAT 74 (331)
Q Consensus 1 ~~~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~------~R~~~~I~t 74 (331)
.|.++|.||||||+. +..++.+.|+.|++.|++|||||..|+ +|+-+|++|++. +|+++||+|
T Consensus 11 ~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~~~v~RediFiTS 79 (300)
T KOG1577|consen 11 NGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAEGGVKREDIFITS 79 (300)
T ss_pred CCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhhCCcchhhheeee
Confidence 367899999999983 568899999999999999999999999 899999999852 899999999
Q ss_pred eecccCCCCCCcccCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCC----------------CCHHHHHHHHHHHHHc
Q 020083 75 KFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS----------------VPIEETIGEMKKLVEE 138 (331)
Q Consensus 75 K~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~----------------~~~~~~~~~l~~l~~~ 138 (331)
|++.. ...++.++.++++||++||+||+|||++|||-.. .+..++|++|+++++.
T Consensus 80 Klw~~---------~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE~~~~~ 150 (300)
T KOG1577|consen 80 KLWPT---------DHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAMEKLVDE 150 (300)
T ss_pred ccCcc---------ccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHHHHHHc
Confidence 99875 3478999999999999999999999999999653 3467899999999999
Q ss_pred CCcceeecCCCCHHHHHHHhcC--CCceEEeccccccccchhhhhHHHHHHhCCeeeecccCCccccCCCCccCCCCCCc
Q 020083 139 GKIKYIGLSEASPDTIRRAHGV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADS 216 (331)
Q Consensus 139 G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~ 216 (331)
|++|+||||||+..++++++.. .++.++|++++++.+ +.+++++|+++||-|.|||||+.+-- +.
T Consensus 151 Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~--Q~~L~~fCk~~~I~v~AYSpLg~~~~-~~---------- 217 (300)
T KOG1577|consen 151 GLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQ--QKKLVEFCKSKGIVVTAYSPLGSPGR-GS---------- 217 (300)
T ss_pred CCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcC--hHHHHHHHhhCCcEEEEecCCCCCCC-cc----------
Confidence 9999999999999999999876 567899999999887 46799999999999999999997531 00
Q ss_pred ccccCcCCCCcchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeEeecCCCCHHHHHHHHhccCCCCCHHHHHHH
Q 020083 217 ILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEI 296 (331)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~~L~~~~~~~i 296 (331)
+.+. -+.+.+||++||.||+|++|||.++++ ++||+.++|++||+||++.+++.||++||+.|
T Consensus 218 -----~ll~----------~~~l~~iA~K~~kt~aQIlLrw~~q~g--~~vipKS~~~~Ri~eN~~vfdf~Lt~ed~~~i 280 (300)
T KOG1577|consen 218 -----DLLE----------DPVLKEIAKKYNKTPAQILLRWALQRG--VSVIPKSSNPERIKENFKVFDFELTEEDMKKL 280 (300)
T ss_pred -----cccc----------CHHHHHHHHHhCCCHHHHHHHHHHhCC--cEEEeccCCHHHHHHHHhhccccCCHHHHHHH
Confidence 0000 148999999999999999999999999 89999999999999999999999999999999
Q ss_pred HhhCCCCc
Q 020083 297 SDAVPIEE 304 (331)
Q Consensus 297 ~~~~~~~~ 304 (331)
+....+.+
T Consensus 281 ~~~~~~~r 288 (300)
T KOG1577|consen 281 DSLNSNER 288 (300)
T ss_pred hhccccce
Confidence 98776654
No 14
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=3.9e-53 Score=383.14 Aligned_cols=248 Identities=31% Similarity=0.404 Sum_probs=218.8
Q ss_pred CccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcC--CCCcEEEEeeeccc
Q 020083 2 VLQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKML--PREKVQIATKFGVV 79 (331)
Q Consensus 2 ~~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~--~R~~~~I~tK~~~~ 79 (331)
|++||+||||||++ +.+++.++|++|++.|+|+||||+.|| +|+.+|++|+.. +|++++|+||++..
T Consensus 12 g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~~~i~tK~~~~ 80 (275)
T PRK11565 12 GNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKEASVAREELFITTKLWND 80 (275)
T ss_pred CCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHHcCCCHHHEEEEEEecCc
Confidence 57899999999975 457899999999999999999999998 799999999863 58999999998532
Q ss_pred CCCCCCcccCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCC-CHHHHHHHHHHHHHcCCcceeecCCCCHHHHHHHh
Q 020083 80 GLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAH 158 (331)
Q Consensus 80 ~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~ 158 (331)
+++.+++++++||++|++||||+|++|+|++.. +..++|++|++|+++|+||+||+|||+++++++++
T Consensus 81 -----------~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~ 149 (275)
T PRK11565 81 -----------DHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLI 149 (275)
T ss_pred -----------chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCHHHHHHHH
Confidence 578999999999999999999999999998753 57899999999999999999999999999998876
Q ss_pred cCC--CceEEeccccccccchhhhhHHHHHHhCCeeeecccCCccccCCCCccCCCCCCcccccCcCCCCcchhhHHHHH
Q 020083 159 GVH--PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIY 236 (331)
Q Consensus 159 ~~~--~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (331)
... .+.++|++||++.+. .+++++|+++||++++|+||++|. . ..|. .
T Consensus 150 ~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~---~---------------~~~~----------~ 199 (275)
T PRK11565 150 DETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGG---K---------------GVFD----------Q 199 (275)
T ss_pred HhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCC---c---------------cccc----------C
Confidence 543 467899999999874 679999999999999999999763 0 0010 1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCCeEeecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhCCCC
Q 020083 237 FRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDAVPIE 303 (331)
Q Consensus 237 ~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~~L~~~~~~~i~~~~~~~ 303 (331)
+.|.++|+++|+|++|+||||+++++ .+||+|+++++|+++|+++++++|+++++++|+++....
T Consensus 200 ~~l~~ia~~~g~s~aq~aL~w~l~~~--~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~ 264 (275)
T PRK11565 200 KVIRDLADKYGKTPAQIVIRWHLDSG--LVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGK 264 (275)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC--CEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccC
Confidence 47899999999999999999999997 569999999999999999999999999999999997543
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=2.1e-53 Score=360.78 Aligned_cols=276 Identities=28% Similarity=0.440 Sum_probs=245.1
Q ss_pred CccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcC--CCCcEEEEeeeccc
Q 020083 2 VLQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKML--PREKVQIATKFGVV 79 (331)
Q Consensus 2 ~~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~--~R~~~~I~tK~~~~ 79 (331)
++++|+|.+|+|++.. | .++.++....|+.|++.|||+||-|+.||++..|+++|.+|+-. .|+++.|.||+|..
T Consensus 10 ~~e~Sriv~G~wRl~d-~--~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lRekieivsKCGI~ 86 (298)
T COG4989 10 GLEFSRIVLGYWRLND-W--NMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKIEIVSKCGIR 86 (298)
T ss_pred CccHHHHHHHHHhhhh-c--cCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhheEeeeccccc
Confidence 6789999999999965 3 34668999999999999999999999999999999999999865 79999999999987
Q ss_pred CCCC---CCcccCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCHHHHHH
Q 020083 80 GLRD---NGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRR 156 (331)
Q Consensus 80 ~~~~---~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~ 156 (331)
.... ....+++|.++|..|+++||++|+|||+|+++||+||+..+.+++.+++..|+++||||++|||||++.+++-
T Consensus 87 ~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVSNf~p~Q~~L 166 (298)
T COG4989 87 LPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVSNFNPAQFEL 166 (298)
T ss_pred cccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecCCCCHHHHHH
Confidence 6532 1235799999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred HhcC--CCceEEeccccccccch-hhhhHHHHHHhCCeeeecccCCcccc-CCCCccCCCCCCcccccCcCCCCcchhhH
Q 020083 157 AHGV--HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFF-GGKAVVESVPADSILHFFPRYKGENLDRN 232 (331)
Q Consensus 157 ~~~~--~~~~~~q~~~n~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~L-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (331)
+... .++.++|++.|+++... ..+.+++|+++.|..++||||++|-+ +|. +..
T Consensus 167 L~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~-----------------------~~~ 223 (298)
T COG4989 167 LQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGD-----------------------DKF 223 (298)
T ss_pred HHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCC-----------------------cch
Confidence 7665 45689999999998753 36799999999999999999998843 221 123
Q ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHcCCCCeEeecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhCCCC
Q 020083 233 KNIYFRIENLAKKYK-CTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDAVPIE 303 (331)
Q Consensus 233 ~~~~~~l~~ia~~~g-~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~~L~~~~~~~i~~~~~~~ 303 (331)
.+..+.|..+|.++| .|.+++|++|++.+|.-..||+|+.+++++++.++|+++.|+.++|-+|-.+..++
T Consensus 224 q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~G~ 295 (298)
T COG4989 224 QRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAIGN 295 (298)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhccC
Confidence 445678999999999 79999999999999999999999999999999999999999999999998886443
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=9.3e-50 Score=340.98 Aligned_cols=272 Identities=28% Similarity=0.402 Sum_probs=236.4
Q ss_pred CccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCC
Q 020083 2 VLQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGL 81 (331)
Q Consensus 2 ~~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~ 81 (331)
+++||+||||+..++..|++ .+.++....|..|+++|||+||||+.||.++||..+|.++++.||+.++|+||+|...-
T Consensus 31 gl~VSk~~fGga~L~~~fgd-~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~aYyIaTKvgRy~l 109 (342)
T KOG1576|consen 31 GLRVSKLGFGGAALGQLFGD-EDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREAYYIATKVGRYEL 109 (342)
T ss_pred cceeeeeeecchhhhhhcCC-cchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhheeeeeeeeeccc
Confidence 68999999999999999987 47777777777799999999999999999999999999999999999999999986532
Q ss_pred CCCCcccCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCC----CCHHHHHHHHHHHHHcCCcceeecCCCCHHHHHHH
Q 020083 82 RDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS----VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA 157 (331)
Q Consensus 82 ~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~----~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~ 157 (331)
+....+++|++.+++|+++||+||++||+|++++|..+.. ..+.|++.+|+++|++||+|+||++.++.+.+.++
T Consensus 110 -d~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGitgypldvl~~~ 188 (342)
T KOG1576|consen 110 -DYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGITGYPLDVLTEC 188 (342)
T ss_pred -CccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeeecccchHHHHHH
Confidence 2223469999999999999999999999999999987644 34689999999999999999999999999999998
Q ss_pred hcCC--CceEEe--ccccccccchhhhhHHHHHHhCCeeeecccCCccccCCCCccCCCCCCcccccCcCCCCcchhhHH
Q 020083 158 HGVH--PITAVQ--MEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNK 233 (331)
Q Consensus 158 ~~~~--~~~~~q--~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (331)
.+.. .++++- .+|++.+.. .-..+++.+..|++|++-++++.|+|+.+.+++..| -.++..
T Consensus 189 ae~~~G~~dvvlsY~ry~l~d~t-Ll~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~wHP--------------aS~Elk 253 (342)
T KOG1576|consen 189 AERGKGRLDVVLSYCRYTLNDNT-LLRYLKRLKSKGVGVINASALSMGLLTNQGPPPWHP--------------ASDELK 253 (342)
T ss_pred HhcCCCceeeehhhhhhccccHH-HHHHHHHHHhcCceEEehhhHHHHHhhcCCCCCCCC--------------CCHHHH
Confidence 8763 366665 677776553 256788888999999999999999999874443333 245677
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeEeecCCCCHHHHHHHHhccCCCCCH
Q 020083 234 NIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTK 290 (331)
Q Consensus 234 ~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~~L~~ 290 (331)
+....-.++|++.|+..+.+|+.|.++.|+++++++|++|.++|+.|+++....||.
T Consensus 254 ~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~ 310 (342)
T KOG1576|consen 254 EAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSS 310 (342)
T ss_pred HHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccc
Confidence 788889999999999999999999999999999999999999999999987667776
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=1.8e-49 Score=354.62 Aligned_cols=262 Identities=28% Similarity=0.405 Sum_probs=234.0
Q ss_pred CccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCC
Q 020083 2 VLQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGL 81 (331)
Q Consensus 2 ~~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~ 81 (331)
+.++|.||||||++...+....|.+.+.++|++|+++|||+||||..|..|.||..+|++|++..|+++.++||+..+..
T Consensus 10 g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~LaTKlp~~~~ 89 (391)
T COG1453 10 GDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKLATKLPSWPV 89 (391)
T ss_pred CcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEEEeecCCccc
Confidence 56899999999999876655678999999999999999999999999988899999999999989999999999986543
Q ss_pred CCCCcccCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHH-----HHHHHHHHHHHcCCcceeecCCC-CHHHHH
Q 020083 82 RDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIE-----ETIGEMKKLVEEGKIKYIGLSEA-SPDTIR 155 (331)
Q Consensus 82 ~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~-----~~~~~l~~l~~~G~ir~iGvS~~-~~~~l~ 155 (331)
+ +++.+++-++++|++||+||+|+|+||..+.. .++ ..++.+++++++|+||++|+|.| +.+.+.
T Consensus 90 ~--------~~edm~r~fneqLekl~~Dy~D~yliH~l~~e-~~~k~~~~g~~df~~kak~eGkIr~~GFSfHgs~e~~~ 160 (391)
T COG1453 90 K--------DREDMERIFNEQLEKLGTDYIDYYLIHGLNTE-TWEKIERLGVFDFLEKAKAEGKIRNAGFSFHGSTEVFK 160 (391)
T ss_pred c--------CHHHHHHHHHHHHHHhCCchhhhhhhccccHH-HHHHHHccChHHHHHHHHhcCcEEEeeecCCCCHHHHH
Confidence 2 79999999999999999999999999999873 332 35899999999999999999999 578899
Q ss_pred HHhcCCCceEEeccccccccchh--hhhHHHHHHhCCeeeecccCCccccCCCCccCCCCCCcccccCcCCCCcchhhHH
Q 020083 156 RAHGVHPITAVQMEWSLWTRDIE--EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNK 233 (331)
Q Consensus 156 ~~~~~~~~~~~q~~~n~~~~~~~--~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (331)
+++...++|++|++||+++.... .+.++.|.++|++|+.++|+.+|-|..+ .|
T Consensus 161 ~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~-----vP-------------------- 215 (391)
T COG1453 161 EIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYN-----VP-------------------- 215 (391)
T ss_pred HHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccC-----CC--------------------
Confidence 99999999999999999998654 4899999999999999999999977653 11
Q ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHHHcCCCCeEeecCCCCHHHHHHHHhccCC---CCCHHHHHHHHhhC
Q 020083 234 NIYFRIENLAKKYK--CTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRI---KLTKEDLKEISDAV 300 (331)
Q Consensus 234 ~~~~~l~~ia~~~g--~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~---~L~~~~~~~i~~~~ 300 (331)
+++.++.+++. .||+.+|+||+++||.|++++.||++++||+||++..+. +||++|+..|+++.
T Consensus 216 ---~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~ 284 (391)
T COG1453 216 ---EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKVE 284 (391)
T ss_pred ---HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHH
Confidence 48899999876 689999999999999999999999999999999998863 39999999888774
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.55 E-value=0.00015 Score=62.49 Aligned_cols=71 Identities=17% Similarity=0.249 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHcCCcceeecCCCCHHHHHHHhcCCCc--eEEeccccccccchhhhhHHHHHHhCCeeeecc
Q 020083 125 IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPI--TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 196 (331)
Q Consensus 125 ~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~--~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~s 196 (331)
+.+.|..|++++.+|+|..||+|.+++.++++++....+ ...|+...--..- -.++.+||.+|.|.+..++
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvv-PpdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVV-PPDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccC-CHHHHHHhhhcceeeeecC
Confidence 456899999999999999999999999999999987553 4556554432222 2689999999999998864
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=92.96 E-value=3.5 Score=38.00 Aligned_cols=154 Identities=12% Similarity=0.083 Sum_probs=94.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCC--hHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHH
Q 020083 24 SEEDGISMIKHAFSKGITFFDTADVYGQN--ANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEA 101 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g--~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~ 101 (331)
+.++..+.++.+.+.|++.|+.-- |.. ...+.| +++++.-. ++-|.-+... .++.+... .+-+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d~~~v-~~lr~~~g-~~~l~vD~n~----------~~~~~~A~-~~~~ 198 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLEDDIERI-RAIREAAP-DARLRVDANQ----------GWTPEEAV-ELLR 198 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhhHHHHH-HHHHHhCC-CCeEEEeCCC----------CcCHHHHH-HHHH
Confidence 567777888889999999998642 211 122333 33433222 4556555532 23444332 3334
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eeecCCCCHHHHHHHhcCCCceEEecccccccc-chhh
Q 020083 102 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEE 179 (331)
Q Consensus 102 sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~ 179 (331)
.|+.++ +.++-.|-+. +.++.+.+|++...+. ..|=+-++...++++++...++++|+.-+..-. ....
T Consensus 199 ~l~~~~-----l~~iEeP~~~----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~ 269 (316)
T cd03319 199 ELAELG-----VELIEQPVPA----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEAL 269 (316)
T ss_pred HHHhcC-----CCEEECCCCC----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHH
Confidence 445554 4445555432 2355677777776665 334455788999999998889999998665422 1236
Q ss_pred hhHHHHHHhCCeeeecccCCcc
Q 020083 180 EIIPLCRELGIGIVPYSPLGRG 201 (331)
Q Consensus 180 ~l~~~~~~~gi~v~a~spl~~G 201 (331)
++..+|+++|+.++..+-+..+
T Consensus 270 ~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 270 RIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHHcCCCEEEECchhhH
Confidence 8899999999999987555433
No 20
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=88.19 E-value=22 Score=33.20 Aligned_cols=153 Identities=12% Similarity=0.099 Sum_probs=91.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc--cCcCC----ChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHH
Q 020083 24 SEEDGISMIKHAFSKGITFFDTA--DVYGQ----NANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRS 97 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA--~~Yg~----g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~ 97 (331)
+.++..+.++.+.+.|++.|-.- ..|.. -...+.| +++++.-.+++.|...... .++.+...+
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v-~~ir~~~g~~~~l~vDaN~----------~~~~~~a~~ 207 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARV-RAVREAVGPDVDLMVDANG----------RWDLAEAIR 207 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHH-HHHHHhhCCCCEEEEECCC----------CCCHHHHHH
Confidence 46777788888889999998743 22210 0122333 3444322244555554421 235544433
Q ss_pred HHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eeecCCCCHHHHHHHhcCCCceEEecccccccc-
Q 020083 98 CCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR- 175 (331)
Q Consensus 98 ~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~- 175 (331)
-+++|. ..++.++..|-+.. .++.+..+++.-.+. ..|=|.++++.+.++++...++++|+.....-.
T Consensus 208 ----~~~~l~--~~~i~~iEqP~~~~----~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi 277 (357)
T cd03316 208 ----LARALE--EYDLFWFEEPVPPD----DLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGI 277 (357)
T ss_pred ----HHHHhC--ccCCCeEcCCCCcc----CHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCH
Confidence 233442 23555677665432 456677777765554 333455788999999988888999988665432
Q ss_pred chhhhhHHHHHHhCCeeeeccc
Q 020083 176 DIEEEIIPLCRELGIGIVPYSP 197 (331)
Q Consensus 176 ~~~~~l~~~~~~~gi~v~a~sp 197 (331)
....++...|+++|+.++..+.
T Consensus 278 ~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 278 TEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHHHHHHHHHcCCeEeccCC
Confidence 1236899999999999887654
No 21
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=85.22 E-value=5.8 Score=38.21 Aligned_cols=109 Identities=20% Similarity=0.282 Sum_probs=64.4
Q ss_pred ccccccccccCCCC----CCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccC
Q 020083 5 VSKLGLGCMNLSSG----YSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVG 80 (331)
Q Consensus 5 vs~lglG~~~~~~~----~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~ 80 (331)
|.+|.+|-.+|... .+..-+.+++.++++.+.+.|+.-+-.-=.||
T Consensus 148 vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyg------------------------------ 197 (416)
T COG0635 148 VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYG------------------------------ 197 (416)
T ss_pred CCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecC------------------------------
Confidence 34566666665421 22333555666666666666666554334444
Q ss_pred CCCCCcccCCChHHHHHHHHHHHHHcCCCcccEEEe-ccCCCC----------CC-HH---HHHHH-HHHHHHcCCccee
Q 020083 81 LRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQ-HRVDTS----------VP-IE---ETIGE-MKKLVEEGKIKYI 144 (331)
Q Consensus 81 ~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~l-H~~~~~----------~~-~~---~~~~~-l~~l~~~G~ir~i 144 (331)
.+..+.+.+.+.+++.+ .|+.|+|.+|.+ |-|... .+ .+ +.++. .+.|.+.|. +.+
T Consensus 198 ------lP~QT~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~y 269 (416)
T COG0635 198 ------LPGQTLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQY 269 (416)
T ss_pred ------CCCCCHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEE
Confidence 11347777777777766 477999999988 444210 11 11 23333 345777777 999
Q ss_pred ecCCCCH
Q 020083 145 GLSEASP 151 (331)
Q Consensus 145 GvS~~~~ 151 (331)
|+|||..
T Consensus 270 eisnfa~ 276 (416)
T COG0635 270 EISNFAK 276 (416)
T ss_pred eechhcC
Confidence 9999975
No 22
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=82.41 E-value=34 Score=30.53 Aligned_cols=102 Identities=18% Similarity=0.155 Sum_probs=64.0
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEe-ccCCCC-----CCHHHHHHHHHHHHHcCCcceeecCCCCHHHHHHHhcCCCc
Q 020083 90 GTPDYVRSCCEASLKRLDVDYIDLYYQ-HRVDTS-----VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPI 163 (331)
Q Consensus 90 ~s~~~i~~~~~~sL~~L~~d~iDl~~l-H~~~~~-----~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 163 (331)
.+.+.+.+..++.+ .-|.|.||+--- -+|... +..+.....++.+++.-.+ -|.+-++.++.++++++...
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~- 97 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGA- 97 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCC-
Confidence 36666666666554 568899999743 345421 1123345566666655233 37888999999999988762
Q ss_pred eEEeccccccccchhhhhHHHHHHhCCeeeeccc
Q 020083 164 TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSP 197 (331)
Q Consensus 164 ~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~sp 197 (331)
+ +-...+.... ..++++.++++|.+++.+..
T Consensus 98 ~-iINdis~~~~--~~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 98 D-IINDVSGGRG--DPEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred C-EEEeCCCCCC--ChHHHHHHHHcCCCEEEECc
Confidence 2 2222233221 15789999999999998754
No 23
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=82.05 E-value=6.8 Score=37.24 Aligned_cols=82 Identities=12% Similarity=0.139 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHHH
Q 020083 25 EEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLK 104 (331)
Q Consensus 25 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~ 104 (331)
......+++.|++.|++++|||.+.. .+..+.... .+-.+.+..-+|..+ ..+--.....+++--+
T Consensus 78 ~~~~~~i~ka~i~~gv~yvDts~~~~---~~~~~~~~a---~~Agit~v~~~G~dP--------Gi~nv~a~~a~~~~~~ 143 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVDTSYYEE---PPWKLDEEA---KKAGITAVLGCGFDP--------GITNVLAAYAAKELFD 143 (389)
T ss_pred chhhHHHHHHHHHhCCCEEEcccCCc---hhhhhhHHH---HHcCeEEEcccCcCc--------chHHHHHHHHHHHhhc
Confidence 34556899999999999999998765 223333222 334455666665442 2222233333333222
Q ss_pred HcCCCcccEEEeccCCCC
Q 020083 105 RLDVDYIDLYYQHRVDTS 122 (331)
Q Consensus 105 ~L~~d~iDl~~lH~~~~~ 122 (331)
.++++|+|..+.|++.
T Consensus 144 --~i~si~iy~g~~g~~~ 159 (389)
T COG1748 144 --EIESIDIYVGGLGEHG 159 (389)
T ss_pred --cccEEEEEEecCCCCC
Confidence 5799999999999765
No 24
>PRK07945 hypothetical protein; Provisional
Probab=82.02 E-value=36 Score=31.76 Aligned_cols=107 Identities=15% Similarity=0.074 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHcCCCeEeCccCcCC-----ChHHHHHHHHhhcC-----CCCcEEEEeeecccCCCCCCcccCCChHHH
Q 020083 26 EDGISMIKHAFSKGITFFDTADVYGQ-----NANETLLGKAFKML-----PREKVQIATKFGVVGLRDNGVIVKGTPDYV 95 (331)
Q Consensus 26 ~~~~~~l~~A~~~Gin~~DtA~~Yg~-----g~sE~~lG~~L~~~-----~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i 95 (331)
....+++++|.+.|+..+=.++|... +.+..-+-+.+... .-.. |.-+.|....-. .+.+.+..
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~--I~Il~GiE~d~~----~~g~~~~~ 184 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAP--FRILTGIEVDIL----DDGSLDQE 184 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCC--ceEEEEeEeccc----CCCCcchh
Confidence 44779999999999998866665321 22233233333221 1112 222333321100 01122222
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeec
Q 020083 96 RSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL 146 (331)
Q Consensus 96 ~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGv 146 (331)
++.|+. .||+ +..+|+.... +.++..+.+.++.+.+.+.-+|=
T Consensus 185 ----~~~l~~--~D~v-IgSvH~~~~~-~~~~~~~~l~~ai~~~~~dvlgH 227 (335)
T PRK07945 185 ----PELLDR--LDVV-VASVHSKLRM-DAAAMTRRMLAAVANPHTDVLGH 227 (335)
T ss_pred ----HHHHHh--CCEE-EEEeecCCCC-CHHHHHHHHHHHhcCCCCeEEec
Confidence 233333 5776 7788987443 34566778888888888777773
No 25
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=81.29 E-value=39 Score=30.09 Aligned_cols=157 Identities=13% Similarity=0.130 Sum_probs=92.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHH
Q 020083 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASL 103 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 103 (331)
+.++..+.++.+.+.|++.|..--.-..-...+.+ +++++.-.+++.|.-.... .++.+...+-+ +.|
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~~~d~~~v-~~vr~~~g~~~~l~vDan~----------~~~~~~a~~~~-~~l 152 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDPARDVAVV-AALREAVGDDAELRVDANR----------GWTPKQAIRAL-RAL 152 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCHHHHHHHH-HHHHHhcCCCCEEEEeCCC----------CcCHHHHHHHH-HHH
Confidence 45667778888899999998753211100111222 3444322234444333211 23554444333 334
Q ss_pred HHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eeecCCCCHHHHHHHhcCCCceEEecccccccc-chhhhh
Q 020083 104 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEEI 181 (331)
Q Consensus 104 ~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l 181 (331)
+.++ +.++..|-+.. .++.+.++++.-.+. ..|=+-++...+.+++....++++|+..+..-. ....++
T Consensus 153 ~~~~-----i~~iEeP~~~~----d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~ 223 (265)
T cd03315 153 EDLG-----LDYVEQPLPAD----DLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRV 223 (265)
T ss_pred HhcC-----CCEEECCCCcc----cHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHH
Confidence 4444 44566665432 346667777665444 334455788899898888889999998665432 123688
Q ss_pred HHHHHHhCCeeeecccCCcc
Q 020083 182 IPLCRELGIGIVPYSPLGRG 201 (331)
Q Consensus 182 ~~~~~~~gi~v~a~spl~~G 201 (331)
...|+++|+.++..+.+..|
T Consensus 224 ~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 224 LAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHHcCCcEEecCccchH
Confidence 99999999999987665544
No 26
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=81.01 E-value=34 Score=30.68 Aligned_cols=135 Identities=12% Similarity=0.125 Sum_probs=77.3
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCHHHHHHHhcCC-CceEEecc
Q 020083 91 TPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVH-PITAVQME 169 (331)
Q Consensus 91 s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~-~~~~~q~~ 169 (331)
+.+.+.+..++.. .-|.|.||+-.= +...+..+.....++.+++.-. .-|.+-++.++.++++++.. ..+ +-..
T Consensus 23 d~~~i~~~A~~~~-~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~-~plsIDT~~~~v~eaaL~~~~G~~-iINs 97 (261)
T PRK07535 23 DAAFIQKLALKQA-EAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVD-VPLCIDSPNPAAIEAGLKVAKGPP-LINS 97 (261)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCC-CCEEEeCCCHHHHHHHHHhCCCCC-EEEe
Confidence 4455555544443 568899998743 2222223445555555554322 23778888999999988762 111 1122
Q ss_pred ccccccchhhhhHHHHHHhCCeeeecccCCccccCCCCccCCCCCCcccccCcCCCCcchhhHHHHHHHHHHHHHHcCCC
Q 020083 170 WSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCT 249 (331)
Q Consensus 170 ~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s 249 (331)
.|..... ..++++.++++|.+++....-..|. +...+...+.++.+.+.+.++|++
T Consensus 98 Is~~~~~-~~~~~~l~~~~g~~vv~m~~~~~g~-----------------------P~t~~~~~~~l~~~v~~a~~~GI~ 153 (261)
T PRK07535 98 VSAEGEK-LEVVLPLVKKYNAPVVALTMDDTGI-----------------------PKDAEDRLAVAKELVEKADEYGIP 153 (261)
T ss_pred CCCCCcc-CHHHHHHHHHhCCCEEEEecCCCCC-----------------------CCCHHHHHHHHHHHHHHHHHcCCC
Confidence 2222211 2478999999999999754322231 111233455666777778888887
Q ss_pred HHHHH
Q 020083 250 SAQLA 254 (331)
Q Consensus 250 ~~qla 254 (331)
+.++.
T Consensus 154 ~~~Ii 158 (261)
T PRK07535 154 PEDIY 158 (261)
T ss_pred HhHEE
Confidence 66654
No 27
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=80.20 E-value=37 Score=30.34 Aligned_cols=143 Identities=17% Similarity=0.142 Sum_probs=79.6
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEE-eccCCCCC-CH----HHHHHHHHHHHHcCCcceeecCCCCHHHHHHHhcCCCc
Q 020083 90 GTPDYVRSCCEASLKRLDVDYIDLYY-QHRVDTSV-PI----EETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPI 163 (331)
Q Consensus 90 ~s~~~i~~~~~~sL~~L~~d~iDl~~-lH~~~~~~-~~----~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 163 (331)
++.+.+.+..++.+ .-|.|.||+-- -.+|.... +. +.+...++.+++.-.+- +.+-++.++.++++++.. .
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G-~ 97 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAG-A 97 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhC-C
Confidence 45566655555544 45889999863 23454331 22 23344456666553333 788889999999998774 3
Q ss_pred eEEeccccccccchhhhhHHHHHHhCCeeeecccCCccccCCCCccCCCCCCcccccCcCCCCcchhhHHHHHHHHHHHH
Q 020083 164 TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLA 243 (331)
Q Consensus 164 ~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia 243 (331)
+.+ ...+....+ .++++.++++|.+++.+.. .|. +.... ..+.| ....+.....+++.-+.+
T Consensus 98 ~iI-Ndisg~~~~--~~~~~l~~~~~~~vV~m~~--~g~------p~~~~------~~~~~-~~~~~~~~~~~~~~i~~~ 159 (257)
T cd00739 98 DII-NDVSGGSDD--PAMLEVAAEYGAPLVLMHM--RGT------PKTMQ------ENPYY-EDVVDEVLSFLEARLEAA 159 (257)
T ss_pred CEE-EeCCCCCCC--hHHHHHHHHcCCCEEEECC--CCC------Ccccc------cCCCc-ccHHHHHHHHHHHHHHHH
Confidence 322 223333221 5789999999999998543 221 11100 00111 112334445566666777
Q ss_pred HHcCCCHHHH
Q 020083 244 KKYKCTSAQL 253 (331)
Q Consensus 244 ~~~g~s~~ql 253 (331)
.++|++..++
T Consensus 160 ~~~Gi~~~~I 169 (257)
T cd00739 160 ESAGVARNRI 169 (257)
T ss_pred HHcCCCHHHE
Confidence 7888754443
No 28
>PRK08392 hypothetical protein; Provisional
Probab=80.00 E-value=22 Score=30.69 Aligned_cols=147 Identities=16% Similarity=0.149 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhc---C-CCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHH
Q 020083 27 DGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKM---L-PREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEAS 102 (331)
Q Consensus 27 ~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~---~-~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 102 (331)
...++++.|.+.|++.+=.++|.... ...-+-..+++ . .+.++.| ..|.... ..++. ....++.
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~-~~~~~~~y~~~i~~l~~~~~i~i--l~GiE~~--------~~~~~-~~~~~~~ 82 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYF-TPSKFNAYINEIRQWGEESEIVV--LAGIEAN--------ITPNG-VDITDDF 82 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCcc-chhhHHHHHHHHHHHhhccCceE--EEeEEee--------ecCCc-chhHHHH
Confidence 36789999999999999766665311 11112222211 1 1122322 2332211 11111 1233344
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCC-------C-HHHHHHH----hcC-CCceEEecc
Q 020083 103 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-------S-PDTIRRA----HGV-HPITAVQME 169 (331)
Q Consensus 103 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~-------~-~~~l~~~----~~~-~~~~~~q~~ 169 (331)
+++ .||+ +.-+|........++..+.+.++.+.|.+.-+|=-.. + ...+.++ .+. ..+.++
T Consensus 83 ~~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiN--- 156 (215)
T PRK08392 83 AKK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEIS--- 156 (215)
T ss_pred Hhh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEe---
Confidence 443 4666 7778944332334677788888888887766654221 1 1222222 222 122333
Q ss_pred ccccccchhhhhHHHHHHhCCeee
Q 020083 170 WSLWTRDIEEEIIPLCRELGIGIV 193 (331)
Q Consensus 170 ~n~~~~~~~~~l~~~~~~~gi~v~ 193 (331)
-..+.+...+++.|++.|+.++
T Consensus 157 --t~~~~p~~~~l~~~~~~G~~~~ 178 (215)
T PRK08392 157 --SRYRVPDLEFIRECIKRGIKLT 178 (215)
T ss_pred --CCCCCCCHHHHHHHHHcCCEEE
Confidence 1122234578999999997754
No 29
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=79.98 E-value=50 Score=30.47 Aligned_cols=133 Identities=10% Similarity=-0.002 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC---cc-----CcCCC----hHHHHHHHHhhcC---CCCcEEEEeeecccCCCCCCccc
Q 020083 24 SEEDGISMIKHAFSKGITFFDT---AD-----VYGQN----ANETLLGKAFKML---PREKVQIATKFGVVGLRDNGVIV 88 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~Dt---A~-----~Yg~g----~sE~~lG~~L~~~---~R~~~~I~tK~~~~~~~~~~~~~ 88 (331)
+.++..+....+.+.|+..+|- ++ .||.| ..-+.+.+.++.. -.+++-|+-|+.....
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------- 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------- 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC-------
Confidence 6777888888888999999992 22 36655 2334555555442 1124678888754211
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHH--H-HHHHHHHHHHcCCcceeecCCC-CHHHHHHHhcCCCce
Q 020083 89 KGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIE--E-TIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGVHPIT 164 (331)
Q Consensus 89 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~--~-~~~~l~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~ 164 (331)
+.+. ...+-+.|+..| +|.+-+|.-....... . -|+...++++.-.|-=||.... ++++.+++++....|
T Consensus 146 --~~~~-~~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~D 219 (312)
T PRK10550 146 --SGER-KFEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCD 219 (312)
T ss_pred --CchH-HHHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCC
Confidence 1122 234555566777 6777888654332111 1 3667777777666777777664 778888887777777
Q ss_pred EEecc
Q 020083 165 AVQME 169 (331)
Q Consensus 165 ~~q~~ 169 (331)
.+++-
T Consensus 220 gVmiG 224 (312)
T PRK10550 220 AVMIG 224 (312)
T ss_pred EEEEc
Confidence 77664
No 30
>PRK13796 GTPase YqeH; Provisional
Probab=78.33 E-value=54 Score=30.95 Aligned_cols=121 Identities=13% Similarity=0.177 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHHHHHcC---CCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHH
Q 020083 23 VSEEDGISMIKHAFSKG---ITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCC 99 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~G---in~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~ 99 (331)
++.++..++++..-+.- +-.+|..+.-+. -...+.+.+. .+.-++|.+|...... ....+.+.+-+
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s--~~~~L~~~~~--~kpviLViNK~DLl~~-------~~~~~~i~~~l 122 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGS--WIPGLHRFVG--NNPVLLVGNKADLLPK-------SVKKNKVKNWL 122 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCc--hhHHHHHHhC--CCCEEEEEEchhhCCC-------ccCHHHHHHHH
Confidence 56677788888877655 445786664432 2334444443 4566889999975421 22456666666
Q ss_pred HHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCHHHHH
Q 020083 100 EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIR 155 (331)
Q Consensus 100 ~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~ 155 (331)
+...+.+|....|++.+..-. ...++++++.+.++.+.+.+--+|.+|..-..+-
T Consensus 123 ~~~~k~~g~~~~~v~~vSAk~-g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLi 177 (365)
T PRK13796 123 RQEAKELGLRPVDVVLISAQK-GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLI 177 (365)
T ss_pred HHHHHhcCCCcCcEEEEECCC-CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHH
Confidence 766777776555777765443 3457888999988877888999999999766543
No 31
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=78.04 E-value=16 Score=32.44 Aligned_cols=105 Identities=18% Similarity=0.145 Sum_probs=66.0
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC-CcceeecCCCCHHHHHHHhcCCCceEEe
Q 020083 89 KGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPDTIRRAHGVHPITAVQ 167 (331)
Q Consensus 89 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvS~~~~~~l~~~~~~~~~~~~q 167 (331)
.++.+...+-++. |..+|+++|.+-..-.+...-..++.++.++.+++.+ .++...++......++.+.+. .++.++
T Consensus 15 ~~s~e~~~~i~~~-L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~-g~~~i~ 92 (265)
T cd03174 15 TFSTEDKLEIAEA-LDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEA-GVDEVR 92 (265)
T ss_pred CCCHHHHHHHHHH-HHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhC-CcCEEE
Confidence 4566666665554 7789988888876654422212246677888888888 567667766556666666554 345555
Q ss_pred ccccccc--------cc------hhhhhHHHHHHhCCeeeec
Q 020083 168 MEWSLWT--------RD------IEEEIIPLCRELGIGIVPY 195 (331)
Q Consensus 168 ~~~n~~~--------~~------~~~~l~~~~~~~gi~v~a~ 195 (331)
+.+..-+ +. .-.+.++.++++|+.+...
T Consensus 93 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~ 134 (265)
T cd03174 93 IFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGS 134 (265)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 5544331 11 1156788889999887654
No 32
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=75.26 E-value=9.6 Score=32.92 Aligned_cols=67 Identities=15% Similarity=0.202 Sum_probs=46.9
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecC-CCCHHHHHHHhcCCCceEEecccc
Q 020083 103 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHGVHPITAVQMEWS 171 (331)
Q Consensus 103 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~n 171 (331)
+..+|.|++=+.+........+.+.+ ..+.+.. .+.++.+||. |.+++.+.++.+...++++|++-+
T Consensus 17 ~~~~GaD~iGfIf~~~SpR~V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG~ 84 (207)
T PRK13958 17 ASQLPIDAIGFIHYEKSKRHQTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHGT 84 (207)
T ss_pred HHHcCCCEEEEecCCCCcccCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECCC
Confidence 35699999999755443344444443 3333322 3568889995 778999999998899999999753
No 33
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=73.51 E-value=14 Score=31.46 Aligned_cols=149 Identities=17% Similarity=0.212 Sum_probs=92.7
Q ss_pred HHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHHHHc---
Q 020083 30 SMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRL--- 106 (331)
Q Consensus 30 ~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L--- 106 (331)
++|..-++-|-+.+|..-..| .+-+.|++ .+ .+.. .| ...+++.+.+++.+-+.-+
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG------~LL~~L~~-~k-~v~g---~G----------vEid~~~v~~cv~rGv~Viq~D 63 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDG------ELLAYLKD-EK-QVDG---YG----------VEIDPDNVAACVARGVSVIQGD 63 (193)
T ss_pred HHHHHHcCCCCEEEecCCCch------HHHHHHHH-hc-CCeE---EE----------EecCHHHHHHHHHcCCCEEECC
Confidence 567778888999999765444 24456654 11 1110 12 1346777777766555433
Q ss_pred --------CCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCHHHHHHHh--cCCCceEEeccccccccc
Q 020083 107 --------DVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAH--GVHPITAVQMEWSLWTRD 176 (331)
Q Consensus 107 --------~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~--~~~~~~~~q~~~n~~~~~ 176 (331)
.-+..|.+.+..-= +.+...-+.|+++.+-|+-.=|++.||.-+.....+ .-..+..-..+|+.++..
T Consensus 64 ld~gL~~f~d~sFD~VIlsqtL--Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTP 141 (193)
T PF07021_consen 64 LDEGLADFPDQSFDYVILSQTL--QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTP 141 (193)
T ss_pred HHHhHhhCCCCCccEEehHhHH--HhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCC
Confidence 33444444442221 112233445778888899888999999877655432 222344577888888753
Q ss_pred h-h----hhhHHHHHHhCCeeeecccCCcc
Q 020083 177 I-E----EEIIPLCRELGIGIVPYSPLGRG 201 (331)
Q Consensus 177 ~-~----~~l~~~~~~~gi~v~a~spl~~G 201 (331)
. . ++..++|++.|+.|.-..++..+
T Consensus 142 Nih~~Ti~DFe~lc~~~~i~I~~~~~~~~~ 171 (193)
T PF07021_consen 142 NIHLCTIKDFEDLCRELGIRIEERVFLDGG 171 (193)
T ss_pred CcccccHHHHHHHHHHCCCEEEEEEEEcCC
Confidence 1 1 78899999999999998888765
No 34
>PRK08609 hypothetical protein; Provisional
Probab=73.36 E-value=30 Score=34.81 Aligned_cols=149 Identities=15% Similarity=0.194 Sum_probs=80.8
Q ss_pred HHHHHHHHHHcCCCeEeCccCcC-----CChHHHHHHHHhhc---C--CCC--cEEEEeeecccCCCCCCcccCCChHHH
Q 020083 28 GISMIKHAFSKGITFFDTADVYG-----QNANETLLGKAFKM---L--PRE--KVQIATKFGVVGLRDNGVIVKGTPDYV 95 (331)
Q Consensus 28 ~~~~l~~A~~~Gin~~DtA~~Yg-----~g~sE~~lG~~L~~---~--~R~--~~~I~tK~~~~~~~~~~~~~~~s~~~i 95 (331)
..++++.|.+.|+.++=.++|+. .|.+...+-..++. . .-. ++++-.-+... ++..
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~------------~~g~ 418 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDIL------------PDGS 418 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeec------------CCcc
Confidence 56699999999999998887752 12333333333221 1 111 23333333322 1111
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCC---------CC--HHHHHHHhcCCCce
Q 020083 96 RSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE---------AS--PDTIRRAHGVHPIT 164 (331)
Q Consensus 96 ~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~---------~~--~~~l~~~~~~~~~~ 164 (331)
..-.+..|+. .||+ |.-+|++.. .+.+++.+.+.++.+.|.+--||=-. +. .+.+.++..... .
T Consensus 419 ~d~~~~~L~~--~D~v-I~SvH~~~~-~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G-~ 493 (570)
T PRK08609 419 LDYDDEVLAE--LDYV-IAAIHSSFS-QSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN-T 493 (570)
T ss_pred hhhcHHHHHh--hCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC-C
Confidence 2222334444 5776 778897643 34577888888888888877665433 11 122222222122 2
Q ss_pred EEeccccccccchhhhhHHHHHHhCCeee
Q 020083 165 AVQMEWSLWTRDIEEEIIPLCRELGIGIV 193 (331)
Q Consensus 165 ~~q~~~n~~~~~~~~~l~~~~~~~gi~v~ 193 (331)
++|+.-+.+.......++..|.+.|+.+.
T Consensus 494 ~lEINa~~~r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 494 ALELNANPNRLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred EEEEcCCccccCccHHHHHHHHHcCCEEE
Confidence 34554444433334678888888888653
No 35
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=72.59 E-value=91 Score=29.77 Aligned_cols=150 Identities=11% Similarity=0.074 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHH-cCCCeEeCccCcCC-ChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHH
Q 020083 24 SEEDGISMIKHAFS-KGITFFDTADVYGQ-NANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEA 101 (331)
Q Consensus 24 ~~~~~~~~l~~A~~-~Gin~~DtA~~Yg~-g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~ 101 (331)
+.++..+.++.+.+ .|++.|=.--.-.+ ....+.| +++++.- .++.|..-... .++++...+
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v-~avRea~-~~~~l~vDaN~----------~w~~~~A~~---- 231 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAV-KALAEAF-PGARLRLDPNG----------AWSLETAIR---- 231 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHH-HHHHHhC-CCCcEEEeCCC----------CcCHHHHHH----
Confidence 55666666777775 69998854321000 0112223 3333321 12333322211 235544333
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eeecCCCCHHHHHHHhcCCCceEEecccccccc-chhh
Q 020083 102 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEE 179 (331)
Q Consensus 102 sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~ 179 (331)
-+++|. + ++.++-.|-+ .++.+.+|+++..+- ..|=|.++..++..+++...++++|......-- ....
T Consensus 232 ~~~~l~-~--~l~~iEeP~~------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~ 302 (395)
T cd03323 232 LAKELE-G--VLAYLEDPCG------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSV 302 (395)
T ss_pred HHHhcC-c--CCCEEECCCC------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHH
Confidence 334553 2 6777777754 467777788776555 556666788889998888889999988665432 1136
Q ss_pred hhHHHHHHhCCeeeecccC
Q 020083 180 EIIPLCRELGIGIVPYSPL 198 (331)
Q Consensus 180 ~l~~~~~~~gi~v~a~spl 198 (331)
++.+.|+++|+.++.++..
T Consensus 303 kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 303 RVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHcCCeEEEecCc
Confidence 8999999999999987654
No 36
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=72.39 E-value=21 Score=34.12 Aligned_cols=59 Identities=17% Similarity=0.067 Sum_probs=35.7
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEecc-CCCC------------CCHHH---HH-HHHHHHHHcCCcceeecCCCC
Q 020083 90 GTPDYVRSCCEASLKRLDVDYIDLYYQHR-VDTS------------VPIEE---TI-GEMKKLVEEGKIKYIGLSEAS 150 (331)
Q Consensus 90 ~s~~~i~~~~~~sL~~L~~d~iDl~~lH~-~~~~------------~~~~~---~~-~~l~~l~~~G~ir~iGvS~~~ 150 (331)
.+.+.+.+.++..+ .|+.++|.+|.+.- |... .+.++ .+ .+.+.|.+.|.. ++++|||.
T Consensus 179 qt~e~~~~tl~~~~-~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeisnfa 254 (400)
T PRK07379 179 QTLEDWQASLEAAI-ALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEISNYA 254 (400)
T ss_pred CCHHHHHHHHHHHH-cCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeeeheE
Confidence 37777777777655 47888888887752 2100 01111 12 345567778864 67888875
No 37
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=72.32 E-value=42 Score=32.91 Aligned_cols=171 Identities=15% Similarity=0.147 Sum_probs=95.1
Q ss_pred CCHHHHHHHHHHHHHc-CCCeEeCccCcCCCh--HHHHHHHH---hhcC-CCCcEEEEeeecccCC-----------CCC
Q 020083 23 VSEEDGISMIKHAFSK-GITFFDTADVYGQNA--NETLLGKA---FKML-PREKVQIATKFGVVGL-----------RDN 84 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~-Gin~~DtA~~Yg~g~--sE~~lG~~---L~~~-~R~~~~I~tK~~~~~~-----------~~~ 84 (331)
.+.++..++++.|++. +++.=|...-+.... .-..|.++ ++.. -.+++++.+=+..... ...
T Consensus 28 ~~~~~v~~il~Kal~~~~Ls~eEal~LL~~~~~~~le~L~~~A~~ir~~~~Gn~I~lfapLyiSN~C~n~C~YCgfs~~n 107 (469)
T PRK09613 28 PDKDEIREILEKAKEKKGLSPEEAAVLLNVEDPELLEEIFEAAREIKEKIYGNRIVLFAPLYISNYCVNNCVYCGFRRSN 107 (469)
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHcCCEEEEEEeccccCCCCCCCccCCCccCC
Confidence 3566788899998873 666555554443211 11223333 2221 2244555443321110 011
Q ss_pred C--cccCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHH----cCCcceeecC--CCCHHHHHH
Q 020083 85 G--VIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVE----EGKIKYIGLS--EASPDTIRR 156 (331)
Q Consensus 85 ~--~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~----~G~ir~iGvS--~~~~~~l~~ 156 (331)
+ ....++.++|.+.++. +..+|...+-|..=..| +..+++.+.+.++.+++ .|.++.++++ ..+.+.+++
T Consensus 108 ~~i~r~~Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p-~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~ 185 (469)
T PRK09613 108 KEIKRKKLTQEEIREEVKA-LEDMGHKRLALVAGEDP-PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKK 185 (469)
T ss_pred CCCCceECCHHHHHHHHHH-HHHCCCCEEEEEeCCCC-CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHH
Confidence 1 1245789999999985 57899887766422222 33467777777777775 5777777764 356777777
Q ss_pred HhcCC--CceEEeccccc-----ccc-----ch--hhhhHHHHHHhCCeeeec
Q 020083 157 AHGVH--PITAVQMEWSL-----WTR-----DI--EEEIIPLCRELGIGIVPY 195 (331)
Q Consensus 157 ~~~~~--~~~~~q~~~n~-----~~~-----~~--~~~l~~~~~~~gi~v~a~ 195 (331)
+.+.. .+.+.|--||. +++ +. ..+.++.+++.|+.-++.
T Consensus 186 LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~ 238 (469)
T PRK09613 186 LKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGI 238 (469)
T ss_pred HHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCe
Confidence 65542 33344444432 111 11 246888899999885554
No 38
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=72.19 E-value=1.8 Score=40.39 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=36.8
Q ss_pred cCCcceeecCCCCHHHHHHHhcCCC-ceEEeccccccccchhhhhHHHHHHhCCe
Q 020083 138 EGKIKYIGLSEASPDTIRRAHGVHP-ITAVQMEWSLWTRDIEEEIIPLCRELGIG 191 (331)
Q Consensus 138 ~G~ir~iGvS~~~~~~l~~~~~~~~-~~~~q~~~n~~~~~~~~~l~~~~~~~gi~ 191 (331)
-|+|||+||--|+++.+.++..... -+..+.+..++-...+..+++.|++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 5999999999999999988776532 23334444444333335677777777776
No 39
>PRK05660 HemN family oxidoreductase; Provisional
Probab=72.08 E-value=25 Score=33.40 Aligned_cols=61 Identities=10% Similarity=0.041 Sum_probs=37.1
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEec-cCCC-------CC-CHHHHHH----HHHHHHHcCCcceeecCCCCH
Q 020083 89 KGTPDYVRSCCEASLKRLDVDYIDLYYQH-RVDT-------SV-PIEETIG----EMKKLVEEGKIKYIGLSEASP 151 (331)
Q Consensus 89 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lH-~~~~-------~~-~~~~~~~----~l~~l~~~G~ir~iGvS~~~~ 151 (331)
..+.+.+.+.++..++ ++.++|.+|.+- .|.. .. +.++.++ +.+.|.+.|. ..+++|||..
T Consensus 170 gqt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yei~~fa~ 243 (378)
T PRK05660 170 DQSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGY-QQYETSAYAK 243 (378)
T ss_pred CCCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCC-cEeecccccC
Confidence 3478888888877654 899999998874 2221 01 1122222 3345677776 5578888753
No 40
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=71.34 E-value=37 Score=29.52 Aligned_cols=87 Identities=13% Similarity=0.061 Sum_probs=60.0
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eeecCCCCHHHHHHHhcCCCceEEecccccccc-chhhhhHHHHHHh
Q 020083 111 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEEIIPLCREL 188 (331)
Q Consensus 111 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~ 188 (331)
.++.++-.|-+..+ ++.+.+|.+...+. ..+=|.++...+..++....++++|+..+..-. ....++...|+++
T Consensus 120 ~~i~~iEeP~~~~d----~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPDD----LEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCccC----HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 56666777755433 45667777776655 334455678888778877788999988766432 1126789999999
Q ss_pred CCeeeecccCCcc
Q 020083 189 GIGIVPYSPLGRG 201 (331)
Q Consensus 189 gi~v~a~spl~~G 201 (331)
|+.++..+.+..|
T Consensus 196 gi~~~~~~~~~s~ 208 (229)
T cd00308 196 GIRVMVHGTLESS 208 (229)
T ss_pred CCEEeecCCCCCH
Confidence 9999987765543
No 41
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=70.72 E-value=46 Score=28.38 Aligned_cols=145 Identities=12% Similarity=0.031 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcC----CCCcEEEEeeecccCCCCCCcccCCChHHHHHHH
Q 020083 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKML----PREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCC 99 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~----~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~ 99 (331)
|.+++.++++.|++.|++..|.- +..+..+++.. .+++++++-= -++.+.+++.+
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i~--------~~~l~p~m~~iG~~w~~gei~va~~-------------~~a~~~~~~~l 68 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIELI--------EKGLMAGMGVVGKLFEDGELFLPHV-------------MMSADAMLAGI 68 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHcCCCccHHHH-------------HHHHHHHHHHH
Confidence 78899999999999999877643 33444444331 2334443111 12344455555
Q ss_pred HHHHHHcCCC----cccEEEeccCCCCCCHHHHHHHHHHHHHcCC-cceeecCCCCHHHHHHHhcCCCceEEeccccccc
Q 020083 100 EASLKRLDVD----YIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWT 174 (331)
Q Consensus 100 ~~sL~~L~~d----~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~ 174 (331)
......+... .---+++-.+..+.+--...-...-|+..|. |.++|.. -+.+.+.+......++++.+.+....
T Consensus 69 ~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~-vp~e~~v~~~~~~~pd~v~lS~~~~~ 147 (197)
T TIGR02370 69 KVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRD-VPIDTVVEKVKKEKPLMLTGSALMTT 147 (197)
T ss_pred HHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEEcccccc
Confidence 5544444421 1112233333333222222222334555664 6667754 47777777777777788877766544
Q ss_pred cchh-hhhHHHHHHhCC
Q 020083 175 RDIE-EEIIPLCRELGI 190 (331)
Q Consensus 175 ~~~~-~~l~~~~~~~gi 190 (331)
.... .++++.+++.+.
T Consensus 148 ~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 148 TMYGQKDINDKLKEEGY 164 (197)
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 4322 678888888854
No 42
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=70.35 E-value=29 Score=32.83 Aligned_cols=60 Identities=18% Similarity=0.151 Sum_probs=37.4
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEecc-CCC-----------CCCHHH----H-HHHHHHHHHcCCcceeecCCCC
Q 020083 89 KGTPDYVRSCCEASLKRLDVDYIDLYYQHR-VDT-----------SVPIEE----T-IGEMKKLVEEGKIKYIGLSEAS 150 (331)
Q Consensus 89 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~-~~~-----------~~~~~~----~-~~~l~~l~~~G~ir~iGvS~~~ 150 (331)
..+.+.+.+.++..+ .|+.++|.+|.+.- |.. ..+-++ . ..+.+.|.+.|. .++++|||.
T Consensus 166 gqt~~~~~~~l~~~~-~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa 242 (370)
T PRK06294 166 TQSLSDFIVDLHQAI-TLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYA 242 (370)
T ss_pred CCCHHHHHHHHHHHH-ccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-Ceeeeeeee
Confidence 347888888888766 48899999998863 220 001111 1 223445777776 557888875
No 43
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=69.99 E-value=25 Score=28.31 Aligned_cols=63 Identities=6% Similarity=0.175 Sum_probs=44.5
Q ss_pred CCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHHHHcC--CCcccEEEeccCCCCCCHHHHHHHHHHHHHc
Q 020083 66 PREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLD--VDYIDLYYQHRVDTSVPIEETIGEMKKLVEE 138 (331)
Q Consensus 66 ~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~--~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~ 138 (331)
.|=-+.|+-|+|.- ..++.|++.+.++++... ....|++++.......++.++...|..+.++
T Consensus 46 ~RlG~sVSKKvg~A----------V~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGKA----------HQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEecccccc----------hhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 34447777787642 367778888888887663 3468999999988767777777777665543
No 44
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=69.47 E-value=55 Score=29.26 Aligned_cols=65 Identities=15% Similarity=0.067 Sum_probs=39.5
Q ss_pred HHHHHHHcCCcceeec-C-CCCHHHHHHHhcC--CCceEEeccccccccchhhhhHHHHHHhCCeeeeccc
Q 020083 131 EMKKLVEEGKIKYIGL-S-EASPDTIRRAHGV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSP 197 (331)
Q Consensus 131 ~l~~l~~~G~ir~iGv-S-~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~sp 197 (331)
.|++..++|+. -+|+ . .-++. +.+++.. .++.++=.+..+++...-..++..|+..|+..+..-|
T Consensus 9 ~lk~~l~~g~~-~~g~~~~~~sp~-~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp 77 (256)
T PRK10558 9 KFKAALAAKQV-QIGCWSALANPI-TTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVP 77 (256)
T ss_pred HHHHHHHcCCc-eEEEEEcCCCcH-HHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECC
Confidence 35555566774 4554 2 22343 3344444 4445556677777775456788888888888887654
No 45
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=68.99 E-value=46 Score=28.99 Aligned_cols=162 Identities=15% Similarity=0.208 Sum_probs=83.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCc-cCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHH
Q 020083 23 VSEEDGISMIKHAFSKGITFFDTA-DVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEA 101 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gin~~DtA-~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~ 101 (331)
.+.++..++++...+.||..+++. +..+. ...+.+-+..+..+.. .+.+-+. ...+.++..++.
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~v~~~~~~~~~~--~~~~~~~------------~~~~~i~~~~~~ 75 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASE-DDFEQVRRLREALPNA--RLQALCR------------ANEEDIERAVEA 75 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSH-HHHHHHHHHHHHHHSS--EEEEEEE------------SCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCH-HHHHHhhhhhhhhccc--ccceeee------------ehHHHHHHHHHh
Confidence 477889999999999999999999 33321 2334444443332222 2222221 245566666653
Q ss_pred HHHHcCCCcccEEEeccCC-----C----CCCHHHHHHHHHHHHHcCCcceeecCC---CCHHHHHHHhcC---CCceEE
Q 020083 102 SLKRLDVDYIDLYYQHRVD-----T----SVPIEETIGEMKKLVEEGKIKYIGLSE---ASPDTIRRAHGV---HPITAV 166 (331)
Q Consensus 102 sL~~L~~d~iDl~~lH~~~-----~----~~~~~~~~~~l~~l~~~G~ir~iGvS~---~~~~~l~~~~~~---~~~~~~ 166 (331)
. ...|.+.+.++.-=++. . ...++.+.+.++..++.|.-..+++.. ++++.+.++.+. ..++.+
T Consensus 76 ~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i 154 (237)
T PF00682_consen 76 A-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADII 154 (237)
T ss_dssp H-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEE
T ss_pred h-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEE
Confidence 3 46777776665422220 0 011345566677788888888888754 455555443322 233444
Q ss_pred ecc--ccccccchhhhhHHHHHHh----CCeeeecccCCc
Q 020083 167 QME--WSLWTRDIEEEIIPLCREL----GIGIVPYSPLGR 200 (331)
Q Consensus 167 q~~--~n~~~~~~~~~l~~~~~~~----gi~v~a~spl~~ 200 (331)
.+. +..+.+..-.+++...+++ .+++.++.-++.
T Consensus 155 ~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gl 194 (237)
T PF00682_consen 155 YLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGL 194 (237)
T ss_dssp EEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-
T ss_pred EeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccc
Confidence 332 2233332224555555542 245555555443
No 46
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=68.19 E-value=60 Score=28.83 Aligned_cols=52 Identities=12% Similarity=0.111 Sum_probs=35.6
Q ss_pred hhhHHHHHHhCCeeeecccCCccccCCCCccCCCCCCcccccCcCCCCcchhhHHHHHHHHHHHHHHcCCC
Q 020083 179 EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCT 249 (331)
Q Consensus 179 ~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s 249 (331)
+..+++|+..|...+...|...|... ......+...+.++.+.++|+++|++
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~~~~~-------------------~~~~~~~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHAGYLT-------------------PPNVIWGRLAENLSELCEYAENIGMD 144 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCCCC-------------------CHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 56889999999999877664332100 01223456677888999999999863
No 47
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=67.73 E-value=97 Score=28.16 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHcCCCCeEeecCCCCHHHHHHHHh
Q 020083 237 FRIENLAKKYKC------TSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNID 282 (331)
Q Consensus 237 ~~l~~ia~~~g~------s~~qlal~~~l~~~~v~~vi~G~~~~~~l~enl~ 282 (331)
.+|.++|++.|. ++.++=..|+-... .+.+-.|+|+|+-|-+++-
T Consensus 228 ~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~-~VGvTAGAStPd~lV~~Vi 278 (294)
T COG0761 228 NRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVK-TVGVTAGASTPDWLVQEVI 278 (294)
T ss_pred HHHHHHHHHhCCCeEEeCChHhCCHHHhcCcc-EEEEecCCCCCHHHHHHHH
Confidence 389999999987 68888899998744 4678899999999888753
No 48
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=67.24 E-value=1.1e+02 Score=28.68 Aligned_cols=146 Identities=11% Similarity=0.045 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHH
Q 020083 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASL 103 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 103 (331)
+.++..+.++.+.+.|++.|=.-- .+.| +++++.-.+++.|.--.. ..++.+...+ -+
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiKv-------~~~v-~avre~~G~~~~l~vDaN----------~~w~~~~A~~----~~ 183 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQL-------PKLF-EAVREKFGFEFHLLHDVH----------HRLTPNQAAR----FG 183 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeCH-------HHHH-HHHHhccCCCceEEEECC----------CCCCHHHHHH----HH
Confidence 456666777778889999886311 2222 334432223343332221 1235544332 22
Q ss_pred HHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eeecCCCCHHHHHHHhcCCCceEEecccccccc-chhhhh
Q 020083 104 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEEI 181 (331)
Q Consensus 104 ~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l 181 (331)
+.|. .++++++-.|-+. +.++.+.+|++...+. ..|=|.++...++.++....++++|+.....-- ....++
T Consensus 184 ~~l~--~~~l~~iEeP~~~----~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~i 257 (361)
T cd03322 184 KDVE--PYRLFWMEDPTPA----ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKI 257 (361)
T ss_pred HHhh--hcCCCEEECCCCc----ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHH
Confidence 3342 2467777777543 3366778888887665 666777889999999888889999998765432 123689
Q ss_pred HHHHHHhCCeeeeccc
Q 020083 182 IPLCRELGIGIVPYSP 197 (331)
Q Consensus 182 ~~~~~~~gi~v~a~sp 197 (331)
.+.|+++|+.++.++.
T Consensus 258 a~~A~~~gi~~~~h~~ 273 (361)
T cd03322 258 ADLASLYGVRTGWHGP 273 (361)
T ss_pred HHHHHHcCCeeeccCC
Confidence 9999999999987644
No 49
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=67.05 E-value=14 Score=31.88 Aligned_cols=74 Identities=20% Similarity=0.301 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecC-CCCHHHHHHHhcCCCceEEecc
Q 020083 91 TPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHGVHPITAVQME 169 (331)
Q Consensus 91 s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~ 169 (331)
+++.+..+ ..+|.|++=+.+.....+..+.+.+ ..+.... .+.+..+||. +-+++.+.++.+...++++|++
T Consensus 12 ~~eda~~~-----~~~Gad~iGfI~~~~S~R~V~~~~a-~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLH 84 (210)
T PRK01222 12 TPEDAEAA-----AELGADAIGFVFYPKSPRYVSPEQA-AELAAAL-PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLH 84 (210)
T ss_pred cHHHHHHH-----HHcCCCEEEEccCCCCCCcCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 45555444 4689999998744433333444333 3333322 3568899996 5688999999998999999997
Q ss_pred cc
Q 020083 170 WS 171 (331)
Q Consensus 170 ~n 171 (331)
-+
T Consensus 85 g~ 86 (210)
T PRK01222 85 GD 86 (210)
T ss_pred CC
Confidence 54
No 50
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=66.89 E-value=1.1e+02 Score=28.32 Aligned_cols=154 Identities=15% Similarity=0.090 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHH
Q 020083 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASL 103 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 103 (331)
+.++..+.++.+.+.|++.|=.-- +. ..+.-+=+++++.- .++-|.-=.. ..++.+.+. . +
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv--~~-~~d~~~v~~vr~~~-~~~~l~vDaN----------~~~~~~~a~-~----~ 192 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKI--TP-QIMHQLVKLRRLRF-PQIPLVIDAN----------ESYDLQDFP-R----L 192 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe--CC-chhHHHHHHHHHhC-CCCcEEEECC----------CCCCHHHHH-H----H
Confidence 456677788888899999884321 11 12222224444421 1222211111 123555432 1 3
Q ss_pred HHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eeecCCCCHHHHHHHhcCCCceEEeccccccccc-hhhhh
Q 020083 104 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEI 181 (331)
Q Consensus 104 ~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l 181 (331)
++|. ..++.++-.|-+ .+.++.+.+++++-.+. ..|=|.++...++.++....++++|+..+..-.- ...++
T Consensus 193 ~~l~--~~~~~~iEeP~~----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~ 266 (324)
T TIGR01928 193 KELD--RYQLLYIEEPFK----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKA 266 (324)
T ss_pred HHHh--hCCCcEEECCCC----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHH
Confidence 3442 235666766653 24457788887775554 5566778999999999888899999886654321 13689
Q ss_pred HHHHHHhCCeeeecccCCccc
Q 020083 182 IPLCRELGIGIVPYSPLGRGF 202 (331)
Q Consensus 182 ~~~~~~~gi~v~a~spl~~G~ 202 (331)
...|+.+|+.++..+.+..|+
T Consensus 267 ~~~A~~~gi~~~~~~~~es~i 287 (324)
T TIGR01928 267 IETCREHGAKVWIGGMLETGI 287 (324)
T ss_pred HHHHHHcCCeEEEcceEcccH
Confidence 999999999999876555443
No 51
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=66.67 E-value=93 Score=27.57 Aligned_cols=89 Identities=18% Similarity=0.140 Sum_probs=51.5
Q ss_pred HHHHHcCCCcccEEEeccCCCCCCH-HHHHHHHHHHHHcCCcceeecCC-CCHHHHHHHhcCCCceEEeccccccccch-
Q 020083 101 ASLKRLDVDYIDLYYQHRVDTSVPI-EETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHGVHPITAVQMEWSLWTRDI- 177 (331)
Q Consensus 101 ~sL~~L~~d~iDl~~lH~~~~~~~~-~~~~~~l~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~~- 177 (331)
+-|+..| +|.+.+|..+..... .-.++.++++++.-.+.-|+... .+++++.+++....++.+.+---+.....
T Consensus 162 ~~l~~~G---~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~ 238 (254)
T TIGR00735 162 KEVEKLG---AGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREIT 238 (254)
T ss_pred HHHHHcC---CCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCC
Confidence 3345666 566777766543211 11245555665555555555544 36788888887766666544322222221
Q ss_pred hhhhHHHHHHhCCee
Q 020083 178 EEEIIPLCRELGIGI 192 (331)
Q Consensus 178 ~~~l~~~~~~~gi~v 192 (331)
..++.+.|+++|+.+
T Consensus 239 ~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 239 IGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHHHCCCcc
Confidence 267889999999865
No 52
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=66.60 E-value=1.1e+02 Score=28.36 Aligned_cols=92 Identities=15% Similarity=0.209 Sum_probs=49.9
Q ss_pred HHcCCCcccEEEecc-CCC-CCCHHHHHHHHHHHHHcCCc-ceeecCCC---CHHHHHHHhcCCC-ceEEeccccccccc
Q 020083 104 KRLDVDYIDLYYQHR-VDT-SVPIEETIGEMKKLVEEGKI-KYIGLSEA---SPDTIRRAHGVHP-ITAVQMEWSLWTRD 176 (331)
Q Consensus 104 ~~L~~d~iDl~~lH~-~~~-~~~~~~~~~~l~~l~~~G~i-r~iGvS~~---~~~~l~~~~~~~~-~~~~q~~~n~~~~~ 176 (331)
+.+|.|+||+-+.-. |+. +...++....++...+.=.+ -.|..|.. +++.+++.++... -..+- |..+..
T Consensus 86 ~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLI---nSat~e 162 (319)
T PRK04452 86 EEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLL---GSAEED 162 (319)
T ss_pred HHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEE---EECCHH
Confidence 588988888865432 332 22333344444443222222 22555532 6788887765422 00111 112222
Q ss_pred hhhhhHHHHHHhCCeeeecccC
Q 020083 177 IEEEIIPLCRELGIGIVPYSPL 198 (331)
Q Consensus 177 ~~~~l~~~~~~~gi~v~a~spl 198 (331)
..+.+.+.|+++|..|++.+|.
T Consensus 163 n~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 163 NYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred HHHHHHHHHHHhCCeEEEEcHH
Confidence 2468999999999999998753
No 53
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=66.53 E-value=24 Score=31.30 Aligned_cols=109 Identities=21% Similarity=0.218 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHH--------------------HHhhcCCCCcEEEEeeecccCCC
Q 020083 23 VSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLG--------------------KAFKMLPREKVQIATKFGVVGLR 82 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG--------------------~~L~~~~R~~~~I~tK~~~~~~~ 82 (331)
.+.++-.++.++|-+.||.||=|.-.-. +-..+- +.+.+ ....++|||=..
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~---s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~-tgkPvIlSTG~s----- 123 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEE---SVDFLEELGVPAYKIASGDLTNLPLLEYIAK-TGKPVILSTGMS----- 123 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHH---HHHHHHHHT-SEEEE-GGGTT-HHHHHHHHT-T-S-EEEE-TT------
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHH---HHHHHHHcCCCEEEeccccccCHHHHHHHHH-hCCcEEEECCCC-----
Confidence 5778899999999999999997764322 222221 11111 344566666443
Q ss_pred CCCcccCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCC-CCHHH-HHHHHHHHHHcCCcceeecCCCCHH
Q 020083 83 DNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEE-TIGEMKKLVEEGKIKYIGLSEASPD 152 (331)
Q Consensus 83 ~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~-~~~~~-~~~~l~~l~~~G~ir~iGvS~~~~~ 152 (331)
+.++|.++++--.++-+ -++.++|..... .+.++ -+..+..|++.=- --||+|.|+..
T Consensus 124 --------tl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g 183 (241)
T PF03102_consen 124 --------TLEEIERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDG 183 (241)
T ss_dssp ---------HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSS
T ss_pred --------CHHHHHHHHHHHHhcCC---CCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCC
Confidence 67778888776645544 689999987432 23322 3555555554322 57799998753
No 54
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=65.98 E-value=27 Score=33.95 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=22.4
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEecc
Q 020083 89 KGTPDYVRSCCEASLKRLDVDYIDLYYQHR 118 (331)
Q Consensus 89 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~ 118 (331)
..+.+.+.+.++..+ .|+.++|++|.+.-
T Consensus 226 gqT~e~~~~~l~~~~-~l~~~~is~y~L~~ 254 (449)
T PRK09058 226 GQTPEIWQQDLAIVR-DLGLDGVDLYALNL 254 (449)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEecccc
Confidence 347888888877665 48999999998863
No 55
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=64.78 E-value=66 Score=30.11 Aligned_cols=60 Identities=15% Similarity=0.087 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEecc-CCCC--------CCHHHHH-HHHHHHHHcCCcceeecCCCCH
Q 020083 90 GTPDYVRSCCEASLKRLDVDYIDLYYQHR-VDTS--------VPIEETI-GEMKKLVEEGKIKYIGLSEASP 151 (331)
Q Consensus 90 ~s~~~i~~~~~~sL~~L~~d~iDl~~lH~-~~~~--------~~~~~~~-~~l~~l~~~G~ir~iGvS~~~~ 151 (331)
.+.+.+.+.++..+ .++.+++.+|.+.- |... .+.++.+ .+.+.|.+.|. ..+++|||..
T Consensus 162 qt~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 162 DNKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 37778888776644 58889888888753 2110 0112233 33555777785 5788888763
No 56
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=63.83 E-value=42 Score=29.08 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcC-CChHH---HHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHH
Q 020083 24 SEEDGISMIKHAFSKGITFFDTADVYG-QNANE---TLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCC 99 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg-~g~sE---~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~ 99 (331)
+.++...+.+.|.++|..|+=|+..|+ .|-+. ++|-+.++. + +-.|.... .+ +.+...+-+
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~----~--v~IKaaGG--------ir-t~~~a~~~i 194 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGD----T--IGVKASGG--------VR-TAEDAIAMI 194 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhcc----C--CeEEEeCC--------CC-CHHHHHHHH
Confidence 567788999999999999999999886 33332 344444432 1 33444211 01 788889999
Q ss_pred HHHHHHcCCCc
Q 020083 100 EASLKRLDVDY 110 (331)
Q Consensus 100 ~~sL~~L~~d~ 110 (331)
+.--.|+|++.
T Consensus 195 ~aGa~riGts~ 205 (211)
T TIGR00126 195 EAGASRIGASA 205 (211)
T ss_pred HHhhHHhCcch
Confidence 99999999875
No 57
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=63.17 E-value=61 Score=30.91 Aligned_cols=147 Identities=16% Similarity=0.202 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeE-eCccCcCCChHHHHHHHHh-hcCCCCcEEEEeeecccCC--CCCCcccCCChHHHHHH
Q 020083 23 VSEEDGISMIKHAFSKGITFF-DTADVYGQNANETLLGKAF-KMLPREKVQIATKFGVVGL--RDNGVIVKGTPDYVRSC 98 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gin~~-DtA~~Yg~g~sE~~lG~~L-~~~~R~~~~I~tK~~~~~~--~~~~~~~~~s~~~i~~~ 98 (331)
.+.+.=.+-++.|++.|-..+ |-|. .| .-..+-+.+ +.. .+-|-| ++.... ...+...+.+++.+.+.
T Consensus 74 ~d~~~E~~K~~~A~~~GADtiMDLSt-Gg---dl~~iR~~il~~s---~vpvGT-VPiYqa~~~~~~~~~~mt~d~~~~~ 145 (423)
T TIGR00190 74 SDIEEEVEKALIAIKYGADTVMDLST-GG---DLDEIRKAILDAV---PVPVGT-VPIYQAAEKVHGAVEDMDEDDMFRA 145 (423)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeeccC-CC---CHHHHHHHHHHcC---CCCccC-ccHHHHHHHhcCChhhCCHHHHHHH
Confidence 356666677899999997644 6553 23 333343333 321 111111 111000 00011346788888888
Q ss_pred HHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCHHHHH-HHhcCCCceEEeccccccccch
Q 020083 99 CEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIR-RAHGVHPITAVQMEWSLWTRDI 177 (331)
Q Consensus 99 ~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~-~~~~~~~~~~~q~~~n~~~~~~ 177 (331)
+++..+ |-+|.+-+|.- -+.+.++.++++| |..|+-+-.-..+. +.+.. -.-|++...
T Consensus 146 ie~qa~----dGVDfmTiH~G-------i~~~~~~~~~~~~--R~~giVSRGGs~~~~WM~~~-------~~ENPlye~- 204 (423)
T TIGR00190 146 IEKQAK----DGVDFMTIHAG-------VLLEYVERLKRSG--RITGIVSRGGAILAAWMLHH-------HKENPLYKN- 204 (423)
T ss_pred HHHHHH----hCCCEEEEccc-------hhHHHHHHHHhCC--CccCeecCcHHHHHHHHHHc-------CCcCchHHH-
Confidence 887765 55888999975 3466788888888 56676655544443 33322 123555543
Q ss_pred hhhhHHHHHHhCCeeeecccCCccc
Q 020083 178 EEEIIPLCRELGIGIVPYSPLGRGF 202 (331)
Q Consensus 178 ~~~l~~~~~~~gi~v~a~spl~~G~ 202 (331)
..++++.|+++++.+- |+.|+
T Consensus 205 fD~lLeI~~~yDVtlS----LGDgl 225 (423)
T TIGR00190 205 FDYILEIAKEYDVTLS----LGDGL 225 (423)
T ss_pred HHHHHHHHHHhCeeee----ccCCc
Confidence 2679999999999884 55554
No 58
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=62.84 E-value=1.3e+02 Score=27.77 Aligned_cols=149 Identities=15% Similarity=0.168 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcCCCh------HHHHHHHHhhcC-CCCcEEEEeeecccCCCCCCcccCCChHHH
Q 020083 23 VSEEDGISMIKHAFSKGITFFDTADVYGQNA------NETLLGKAFKML-PREKVQIATKFGVVGLRDNGVIVKGTPDYV 95 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~------sE~~lG~~L~~~-~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i 95 (331)
.+.++..++++.+.+.|++.+.-. | |+ -.+++- .+++. .-.++.|+|-... +
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~t---G-GEPll~~~l~~li~-~i~~~~~~~~i~itTNG~l----------------l 107 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLT---G-GEPLLRKDLEDIIA-ALAALPGIRDLALTTNGYL----------------L 107 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---C-CCCcCccCHHHHHH-HHHhcCCCceEEEEcCchh----------------H
Confidence 578899999999999999887643 2 21 122222 23321 1235666665321 1
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCCC--------CCCHHHHHHHHHHHHHcCC----cceeecCCCCHHHHHHH---hcC
Q 020083 96 RSCCEASLKRLDVDYIDLYYQHRVDT--------SVPIEETIGEMKKLVEEGK----IKYIGLSEASPDTIRRA---HGV 160 (331)
Q Consensus 96 ~~~~~~sL~~L~~d~iDl~~lH~~~~--------~~~~~~~~~~l~~l~~~G~----ir~iGvS~~~~~~l~~~---~~~ 160 (331)
.+. -+.|...|++.+- +-+|..++ ...+++++++++.+++.|. |..+.+...+.+++.++ ...
T Consensus 108 ~~~-~~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~ 185 (331)
T PRK00164 108 ARR-AAALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKD 185 (331)
T ss_pred HHH-HHHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHh
Confidence 111 2334455655443 34454432 2357899999999999986 33444434444444443 333
Q ss_pred CCceEEeccccccccc---------hhhhhHHHHHHhCCeeee
Q 020083 161 HPITAVQMEWSLWTRD---------IEEEIIPLCRELGIGIVP 194 (331)
Q Consensus 161 ~~~~~~q~~~n~~~~~---------~~~~l~~~~~~~gi~v~a 194 (331)
.++.+.-++|.++... ...++++..+++|+.+..
T Consensus 186 ~gv~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (331)
T PRK00164 186 RGIQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQP 228 (331)
T ss_pred CCCeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccc
Confidence 4455545555544321 014677777777655433
No 59
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=62.71 E-value=99 Score=27.84 Aligned_cols=65 Identities=12% Similarity=0.006 Sum_probs=38.3
Q ss_pred HHHHHHHcCCcceeec-CC-CCHHHHHHHhcC--CCceEEeccccccccchhhhhHHHHHHhCCeeeeccc
Q 020083 131 EMKKLVEEGKIKYIGL-SE-ASPDTIRRAHGV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSP 197 (331)
Q Consensus 131 ~l~~l~~~G~ir~iGv-S~-~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~sp 197 (331)
.|++..++|+.- +|+ .. .++... +.+.. .++.++=.+..+++......++..++..|+..+..-|
T Consensus 8 ~lk~~L~~G~~~-~G~~~~~~sp~~~-E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp 76 (267)
T PRK10128 8 PFKEGLRKGEVQ-IGLWLSSTTSYMA-EIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPV 76 (267)
T ss_pred HHHHHHHcCCce-EEEEecCCCcHHH-HHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECC
Confidence 355555667753 443 22 344444 33333 4444556678888775446678888888887776544
No 60
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=62.50 E-value=1.1e+02 Score=27.14 Aligned_cols=103 Identities=12% Similarity=0.022 Sum_probs=59.6
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCHHHHHHHhcCC-CceEEec
Q 020083 90 GTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVH-PITAVQM 168 (331)
Q Consensus 90 ~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~-~~~~~q~ 168 (331)
.+++.+.+..++.++ -|.|+||+-. .|.. .+-++.+..+....++-.=.-|.|-+++++.++++++.. ..+ +-.
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~-~~~~ee~~r~v~~i~~~~~~piSIDT~~~~v~e~aL~~~~G~~-iIN 97 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGG-LDGVSAMKWLLNLLATEPTVPLMLDSTNWEVIEAGLKCCQGKC-VVN 97 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCC-CCHHHHHHHHHHHHHHhcCCcEEeeCCcHHHHHHHHhhCCCCc-EEE
Confidence 467777777777765 5999999865 3432 222222322222222211123777788999999988752 222 222
Q ss_pred ccccccc-chhhhhHHHHHHhCCeeeeccc
Q 020083 169 EWSLWTR-DIEEEIIPLCRELGIGIVPYSP 197 (331)
Q Consensus 169 ~~n~~~~-~~~~~l~~~~~~~gi~v~a~sp 197 (331)
..+.... .....+++.++++|.+++.+..
T Consensus 98 sIs~~~~~e~~~~~~~~~~~~~~~vV~m~~ 127 (252)
T cd00740 98 SINLEDGEERFLKVARLAKEHGAAVVVLAF 127 (252)
T ss_pred eCCCCCCccccHHHHHHHHHhCCCEEEecc
Confidence 3333321 1124678899999999998744
No 61
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=61.85 E-value=1.1e+02 Score=26.90 Aligned_cols=84 Identities=12% Similarity=0.046 Sum_probs=42.8
Q ss_pred HHHHHcCCCcccEEEeccCCCCCCH-HHHHHHHHHHHHcCCcceeecCCC-CHHHHHHHhcCCCceEEeccccccccch-
Q 020083 101 ASLKRLDVDYIDLYYQHRVDTSVPI-EETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGVHPITAVQMEWSLWTRDI- 177 (331)
Q Consensus 101 ~sL~~L~~d~iDl~~lH~~~~~~~~-~~~~~~l~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~~n~~~~~~- 177 (331)
+.++.+| +|.+.+|..+..... .--++.++++++.-.+.-|..-.. +++.++++++...++.+++.--++....
T Consensus 156 ~~l~~~G---~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~ 232 (243)
T cd04731 156 KEVEELG---AGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYT 232 (243)
T ss_pred HHHHHCC---CCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCC
Confidence 3345566 566667765542111 012455555555545555555443 5777877777655665555333333221
Q ss_pred hhhhHHHHHH
Q 020083 178 EEEIIPLCRE 187 (331)
Q Consensus 178 ~~~l~~~~~~ 187 (331)
..++...|++
T Consensus 233 ~~~~~~~~~~ 242 (243)
T cd04731 233 IAELKEYLAE 242 (243)
T ss_pred HHHHHHHHhh
Confidence 1345555554
No 62
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=61.42 E-value=14 Score=27.96 Aligned_cols=54 Identities=24% Similarity=0.207 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHhcCCCceEEecccccccc-chhhhhHHHHHHhCCeeeecccCCcc
Q 020083 147 SEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYSPLGRG 201 (331)
Q Consensus 147 S~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~gi~v~a~spl~~G 201 (331)
+.++...++++++...++++|+.....-- .....+.+.|+++|+.++..+. ..+
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 45788889999988888999987654421 1136899999999999999886 543
No 63
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=61.19 E-value=50 Score=31.77 Aligned_cols=86 Identities=13% Similarity=-0.018 Sum_probs=61.1
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHc------CCcceeecCCCCHHHHHHHhcCCCceEEeccccccccc-hhhhhHHH
Q 020083 112 DLYYQHRVDTSVPIEETIGEMKKLVEE------GKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPL 184 (331)
Q Consensus 112 Dl~~lH~~~~~~~~~~~~~~l~~l~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l~~~ 184 (331)
++ ++-.|-+..+.++.++.+.+|+++ ..=-..+=|.++.+.+.+++...-.+++|+..+-.--- ...++.++
T Consensus 265 ~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~l 343 (408)
T TIGR01502 265 HL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMY 343 (408)
T ss_pred Ce-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHH
Confidence 44 777776554434567778877765 33333444667899999998888889999987754221 23689999
Q ss_pred HHHhCCeeeecccC
Q 020083 185 CRELGIGIVPYSPL 198 (331)
Q Consensus 185 ~~~~gi~v~a~spl 198 (331)
|+.+||+++..+..
T Consensus 344 A~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 344 CKANGMGAYVGGTC 357 (408)
T ss_pred HHHcCCEEEEeCCC
Confidence 99999999986654
No 64
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=60.77 E-value=1.4e+02 Score=27.58 Aligned_cols=105 Identities=15% Similarity=0.044 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHHc-CCCeEeCccCcCCChHHHHHHHHh---hcC-CCCcEEEEeeecccCCCCCCcccCCChHHHHH
Q 020083 23 VSEEDGISMIKHAFSK-GITFFDTADVYGQNANETLLGKAF---KML-PREKVQIATKFGVVGLRDNGVIVKGTPDYVRS 97 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~-Gin~~DtA~~Yg~g~sE~~lG~~L---~~~-~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~ 97 (331)
.+.++..+++++..++ ||+.+=-+..=..-.+...+.+.+ ++. ..+.+.|.|+.... .+..+.+
T Consensus 119 l~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~-----------~p~rit~ 187 (321)
T TIGR03822 119 LSPAELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVA-----------DPARVTP 187 (321)
T ss_pred CCHHHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCccc-----------ChhhcCH
Confidence 3557778888877655 887653221000001222233333 322 23345677765422 2333444
Q ss_pred HHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCC
Q 020083 98 CCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK 140 (331)
Q Consensus 98 ~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ 140 (331)
.+-+.|+..|. . ..+.+|...+..-.++++++++.|++.|.
T Consensus 188 ell~~L~~~g~-~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi 228 (321)
T TIGR03822 188 ALIAALKTSGK-T-VYVALHANHARELTAEARAACARLIDAGI 228 (321)
T ss_pred HHHHHHHHcCC-c-EEEEecCCChhhcCHHHHHHHHHHHHcCC
Confidence 55556666663 2 35677875544334788899999999884
No 65
>PLN02363 phosphoribosylanthranilate isomerase
Probab=60.15 E-value=27 Score=31.30 Aligned_cols=75 Identities=19% Similarity=0.296 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecC-CCCHHHHHHHhcCCCceEEecc
Q 020083 91 TPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHGVHPITAVQME 169 (331)
Q Consensus 91 s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~ 169 (331)
+++.++.+. ++|.|++=+++..........+.+ ..+........++.+||. +-+++.+.++.+..+++++|++
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~SpR~Vs~e~a-~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLH 129 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPKSKRSISLSVA-KEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLH 129 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCCCCCcCCHHHH-HHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 455555544 589999999754433333444333 333333333246679995 7789999999988999999997
Q ss_pred cc
Q 020083 170 WS 171 (331)
Q Consensus 170 ~n 171 (331)
-+
T Consensus 130 G~ 131 (256)
T PLN02363 130 GN 131 (256)
T ss_pred CC
Confidence 43
No 66
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=60.14 E-value=1.3e+02 Score=27.14 Aligned_cols=151 Identities=13% Similarity=0.107 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc----------cCcCCChHHHHHHHHhhcCCCC-cEEEEeeecccCCCCCCcccCCCh
Q 020083 24 SEEDGISMIKHAFSKGITFFDTA----------DVYGQNANETLLGKAFKMLPRE-KVQIATKFGVVGLRDNGVIVKGTP 92 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA----------~~Yg~g~sE~~lG~~L~~~~R~-~~~I~tK~~~~~~~~~~~~~~~s~ 92 (331)
+.++..++.+.+.+.|+..+|.- ..|+ .+.+.+-+.++...+. ++-|.-|+++..
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~------------ 165 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKKATDVPVIVKLTPNV------------ 165 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHhccCCCEEEEeCCCc------------
Confidence 56778888888889999999862 2233 3566666666553211 567888885321
Q ss_pred HHHHHHHHHHHHHcCCCcccEEE------eccCCCC-------------CCHHHHHHHHHHHHHcCCcceeecCCC-CHH
Q 020083 93 DYVRSCCEASLKRLDVDYIDLYY------QHRVDTS-------------VPIEETIGEMKKLVEEGKIKYIGLSEA-SPD 152 (331)
Q Consensus 93 ~~i~~~~~~sL~~L~~d~iDl~~------lH~~~~~-------------~~~~~~~~~l~~l~~~G~ir~iGvS~~-~~~ 152 (331)
+.+. .+-+.++..|.|.|++.- +|.-... ....-.++.+.++++.=.+-=||+... +++
T Consensus 166 ~~~~-~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~ 244 (296)
T cd04740 166 TDIV-EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGE 244 (296)
T ss_pred hhHH-HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHH
Confidence 1222 333456778877776531 1110000 001225677777777656788888775 788
Q ss_pred HHHHHhcCCCceEEeccccccc-cc----hhhhhHHHHHHhCC
Q 020083 153 TIRRAHGVHPITAVQMEWSLWT-RD----IEEEIIPLCRELGI 190 (331)
Q Consensus 153 ~l~~~~~~~~~~~~q~~~n~~~-~~----~~~~l~~~~~~~gi 190 (331)
.+.+++... .+.+|+-=-++. +. ...++.++.+++|.
T Consensus 245 da~~~l~~G-Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 245 DALEFLMAG-ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHHHHcC-CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 888887644 677776433333 21 22456666666663
No 67
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=59.91 E-value=58 Score=28.18 Aligned_cols=81 Identities=19% Similarity=0.259 Sum_probs=52.1
Q ss_pred HHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCC-cceeecC-CCCHHHHHHHhcCCCceEEeccccccccchhhhh
Q 020083 104 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLS-EASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEI 181 (331)
Q Consensus 104 ~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l 181 (331)
..+|.||+=+++.-...+....+++ +++.+.-. +..+||. |.+.+.+.+++....++.+|++-.. ..+.
T Consensus 19 ~~~gad~iG~If~~~SpR~Vs~~~a----~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e-----~~~~ 89 (208)
T COG0135 19 AKAGADYIGFIFVPKSPRYVSPEQA----REIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDE-----DPEY 89 (208)
T ss_pred HHcCCCEEEEEEcCCCCCcCCHHHH----HHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCC-----CHHH
Confidence 4689999888666533333443333 33333333 7899996 5688889999999999999997552 2345
Q ss_pred HHHHHHhC-Ceee
Q 020083 182 IPLCRELG-IGIV 193 (331)
Q Consensus 182 ~~~~~~~g-i~v~ 193 (331)
++..++.. +.|+
T Consensus 90 ~~~l~~~~~~~v~ 102 (208)
T COG0135 90 IDQLKEELGVPVI 102 (208)
T ss_pred HHHHHhhcCCceE
Confidence 55555543 5554
No 68
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=59.72 E-value=44 Score=32.56 Aligned_cols=112 Identities=18% Similarity=0.228 Sum_probs=61.3
Q ss_pred HHHHHHHHHcCCCeEeCcc---------CcCCChHHHHHHHHhhcC---CCCcEEEEeeecccCCCCCCcccCCChHHHH
Q 020083 29 ISMIKHAFSKGITFFDTAD---------VYGQNANETLLGKAFKML---PREKVQIATKFGVVGLRDNGVIVKGTPDYVR 96 (331)
Q Consensus 29 ~~~l~~A~~~Gin~~DtA~---------~Yg~g~sE~~lG~~L~~~---~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~ 96 (331)
.+.++...+.|+|.+.-+- ..+.+.+.+.+-++++.. .-+.+-+.-=+|.. ..+.+.+.
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlP---------gqt~e~~~ 222 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLP---------HQTVESFR 222 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCC---------CCCHHHHH
Confidence 4566667777888885431 112222223333444332 11222222223322 34788888
Q ss_pred HHHHHHHHHcCCCcccEEEe-ccCCCC----------C-CHHHH----HHHHHHHHHcCCcceeecCCCCH
Q 020083 97 SCCEASLKRLDVDYIDLYYQ-HRVDTS----------V-PIEET----IGEMKKLVEEGKIKYIGLSEASP 151 (331)
Q Consensus 97 ~~~~~sL~~L~~d~iDl~~l-H~~~~~----------~-~~~~~----~~~l~~l~~~G~ir~iGvS~~~~ 151 (331)
+.++..+ .|+.++|.+|.+ |.|... . +.++. ..+.+.|.+.|. ..+|+++|..
T Consensus 223 ~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy-~~~~~~~far 291 (453)
T PRK13347 223 ETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGY-VPIGLDHFAL 291 (453)
T ss_pred HHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 8887766 689999999876 333210 1 11222 234567888896 5589999853
No 69
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=59.47 E-value=1.4e+02 Score=28.28 Aligned_cols=85 Identities=16% Similarity=0.051 Sum_probs=57.8
Q ss_pred EEEeccCCCCCCHHHHHHHHHHHHHc------CCcceeecCCCCHHHHHHHhcCCCceEEeccccccccc-hhhhhHHHH
Q 020083 113 LYYQHRVDTSVPIEETIGEMKKLVEE------GKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLC 185 (331)
Q Consensus 113 l~~lH~~~~~~~~~~~~~~l~~l~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l~~~~ 185 (331)
++++-.|-+..+.++.++.+.++.++ +.=-..|=+.++...+++++...-.+++|+..+-.--- ...++.+.|
T Consensus 229 ~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA 308 (369)
T cd03314 229 PLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYC 308 (369)
T ss_pred cEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHH
Confidence 34566665443333446677777666 33334455667889999988888889999887753221 136899999
Q ss_pred HHhCCeeeeccc
Q 020083 186 RELGIGIVPYSP 197 (331)
Q Consensus 186 ~~~gi~v~a~sp 197 (331)
+.+||.++..+.
T Consensus 309 ~a~Gi~~~~h~~ 320 (369)
T cd03314 309 KEHGVGAYLGGS 320 (369)
T ss_pred HHcCCcEEEeCC
Confidence 999999998654
No 70
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=58.94 E-value=13 Score=25.17 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHH
Q 020083 238 RIENLAKKYKCTSAQLALAWVL 259 (331)
Q Consensus 238 ~l~~ia~~~g~s~~qlal~~~l 259 (331)
...+||+++|+++.++|..|+.
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 4678999999999999999986
No 71
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=58.64 E-value=1.4e+02 Score=26.85 Aligned_cols=120 Identities=7% Similarity=-0.054 Sum_probs=68.8
Q ss_pred ccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCc-cCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCC
Q 020083 7 KLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTA-DVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNG 85 (331)
Q Consensus 7 ~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA-~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~ 85 (331)
.||.++|+....-+.-.+.+...+-.-..+...+|.+..- ..|.. .+++.+-+|.++ ..+++..+-|+......
T Consensus 4 ~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~-p~~~t~~~W~~~-~p~~FrFsvK~~~~iTH--- 78 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAP-PSPETVLRWAEE-TPDDFRFSVKAPRAITH--- 78 (263)
T ss_pred EEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCC-CCHHHHHHHHHh-CCCCeEEEEEecccccc---
Confidence 4677777764322211222222222223344557777633 34554 478888889886 77899999999654321
Q ss_pred cccCCCh---HHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHH
Q 020083 86 VIVKGTP---DYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKK 134 (331)
Q Consensus 86 ~~~~~s~---~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~ 134 (331)
..... ..+.+.+.+-++.|+ +.+..+++.-|.....-.+.++.|++
T Consensus 79 --~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf~~~~~n~~~l~~ 127 (263)
T COG1801 79 --QRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSFKYTPENLEYLEK 127 (263)
T ss_pred --hhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCcccCChhhHHHHHH
Confidence 11122 345555555566777 68999999999766422333333333
No 72
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=58.34 E-value=67 Score=30.31 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=21.6
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEec
Q 020083 89 KGTPDYVRSCCEASLKRLDVDYIDLYYQH 117 (331)
Q Consensus 89 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lH 117 (331)
..+.+.+.+.++..+ .++.+++.+|.+.
T Consensus 171 gqt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 171 GESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 347888888777554 5899999998876
No 73
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=57.80 E-value=1.1e+02 Score=27.15 Aligned_cols=64 Identities=13% Similarity=0.004 Sum_probs=37.2
Q ss_pred HHHHHHcCCcceeec--CCCCHHHHHHHhcC--CCceEEeccccccccchhhhhHHHHHHhCCeeeeccc
Q 020083 132 MKKLVEEGKIKYIGL--SEASPDTIRRAHGV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSP 197 (331)
Q Consensus 132 l~~l~~~G~ir~iGv--S~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~sp 197 (331)
|++..++|+. -+|+ +.-++... +.+.. .++.++=.+..+++...-..++..++..|+..+..-|
T Consensus 3 lk~~l~~g~~-~~G~~~~~~sp~~~-e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp 70 (249)
T TIGR03239 3 FRQDLLARET-LIGCWSALGNPITT-EVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPP 70 (249)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHH-HHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECC
Confidence 3444455664 3443 22344444 44443 4445556677877775446778888888888777644
No 74
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=57.40 E-value=72 Score=29.45 Aligned_cols=106 Identities=13% Similarity=0.210 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHHHHc
Q 020083 27 DGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRL 106 (331)
Q Consensus 27 ~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L 106 (331)
.-+++|+.+-++|| .+|.|.. +++.+=+++.- .+..+|+|......-. +..++--.++++...++=
T Consensus 150 ~Gk~lV~~~N~LgI-iiDlSH~-----s~kt~~Dvl~~--s~~PviaSHSN~~al~------~h~RNl~D~qlkaI~~~g 215 (313)
T COG2355 150 FGKELVREMNELGI-IIDLSHL-----SDKTFWDVLDL--SKAPVVASHSNARALV------DHPRNLSDEQLKAIAETG 215 (313)
T ss_pred HHHHHHHHHHhcCC-EEEeccc-----CCccHHHHHhc--cCCceEEecCCchhcc------CCCCCCCHHHHHHHHhcC
Confidence 46899999999999 9999975 67777777763 4556777766544321 223333334444444555
Q ss_pred CCCcccEEEeccC-----CCCCCHHHHHHHHHHHHHcCCcceeecCC
Q 020083 107 DVDYIDLYYQHRV-----DTSVPIEETIGEMKKLVEEGKIKYIGLSE 148 (331)
Q Consensus 107 ~~d~iDl~~lH~~-----~~~~~~~~~~~~l~~l~~~G~ir~iGvS~ 148 (331)
|+ |.+.++-.. ....++++.++.+..+++.+=++++|+..
T Consensus 216 Gv--Igv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 216 GV--IGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred CE--EEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 53 444443222 23457899999999999999999999964
No 75
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=57.11 E-value=1.3e+02 Score=26.21 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcCCC
Q 020083 23 VSEEDGISMIKHAFSKGITFFDTADVYGQN 52 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g 52 (331)
-+.++..++++.|.+.||+-+=..++|-.|
T Consensus 17 ~s~eesl~ml~~A~~qGvt~iVaTsHh~~g 46 (254)
T COG4464 17 KSLEESLAMLREAVRQGVTKIVATSHHLHG 46 (254)
T ss_pred CcHHHHHHHHHHHHHcCceEEeecccccCC
Confidence 378999999999999999987666666544
No 76
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=56.41 E-value=55 Score=28.55 Aligned_cols=76 Identities=17% Similarity=0.171 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcC-CChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHH
Q 020083 23 VSEEDGISMIKHAFSKGITFFDTADVYG-QNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEA 101 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg-~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~ 101 (331)
.+.++..++.+.+.+.|..|+=|+..|+ .|.+.+.+....+. -+.++-|--=.|.+ +.+...+-++.
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~-~~~~~~IKasGGIr-----------t~~~a~~~i~a 200 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRET-VGPRVGVKASGGIR-----------TLEDALAMIEA 200 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHH-hCCCceEEeeCCcC-----------CHHHHHHHHHc
Confidence 4678889999999999999999999985 45666666444433 22332222222222 67777777777
Q ss_pred HHHHcCCCc
Q 020083 102 SLKRLDVDY 110 (331)
Q Consensus 102 sL~~L~~d~ 110 (331)
--.|+||.+
T Consensus 201 GA~riGtS~ 209 (221)
T PRK00507 201 GATRLGTSA 209 (221)
T ss_pred CcceEccCc
Confidence 777777653
No 77
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=56.23 E-value=95 Score=29.76 Aligned_cols=147 Identities=18% Similarity=0.211 Sum_probs=85.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeE-eCccCcCCChHHHHHHHH-hhcCCCCcEEEEeeecccCC--C---CCCcccCCChHHH
Q 020083 23 VSEEDGISMIKHAFSKGITFF-DTADVYGQNANETLLGKA-FKMLPREKVQIATKFGVVGL--R---DNGVIVKGTPDYV 95 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gin~~-DtA~~Yg~g~sE~~lG~~-L~~~~R~~~~I~tK~~~~~~--~---~~~~~~~~s~~~i 95 (331)
.+.+.=.+-++.|.+.|-..+ |-|. .| .-..+-+. |+.. .+-|-| ++.... . ..+...+.+.+.+
T Consensus 74 ~d~~~E~~K~~~A~~~GADtiMDLSt-gg---dl~~iR~~il~~s---~vpvGT-VPiYqa~~~~~~k~~~~~~mt~d~~ 145 (431)
T PRK13352 74 SDIEEELEKAKVAVKYGADTIMDLST-GG---DLDEIRRAIIEAS---PVPVGT-VPIYQAAVEAARKYGSVVDMTEDDL 145 (431)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeeccC-CC---CHHHHHHHHHHcC---CCCCcC-hhHHHHHHHHHhcCCChhhCCHHHH
Confidence 366666677899999997644 6553 23 33333333 3321 111111 110000 0 0011346788888
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCHHHHH-HHhcCCCceEEeccccccc
Q 020083 96 RSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIR-RAHGVHPITAVQMEWSLWT 174 (331)
Q Consensus 96 ~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~-~~~~~~~~~~~q~~~n~~~ 174 (331)
.+.+++..+ |-+|.+-+|.- -+.+.++.++++| |-.|+-+-.-..+. +.+.. ..-|++.
T Consensus 146 ~~~ie~qa~----~GVDfmTiHcG-------i~~~~~~~~~~~~--R~~giVSRGGs~~~~WM~~n-------~~ENPly 205 (431)
T PRK13352 146 FDVIEKQAK----DGVDFMTIHCG-------VTRETLERLKKSG--RIMGIVSRGGSFLAAWMLHN-------NKENPLY 205 (431)
T ss_pred HHHHHHHHH----hCCCEEEEccc-------hhHHHHHHHHhcC--CccCeecCCHHHHHHHHHHc-------CCcCchH
Confidence 888887765 55889999985 2456778888887 55676655444443 33221 1235555
Q ss_pred cchhhhhHHHHHHhCCeeeecccCCccc
Q 020083 175 RDIEEEIIPLCRELGIGIVPYSPLGRGF 202 (331)
Q Consensus 175 ~~~~~~l~~~~~~~gi~v~a~spl~~G~ 202 (331)
.. ..++++.|+++++.+ +|+.|+
T Consensus 206 e~-fD~lLeI~~~yDVtl----SLGDgl 228 (431)
T PRK13352 206 EH-FDYLLEILKEYDVTL----SLGDGL 228 (431)
T ss_pred HH-HHHHHHHHHHhCeee----eccCCc
Confidence 43 368999999999988 455554
No 78
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=55.84 E-value=61 Score=30.42 Aligned_cols=72 Identities=8% Similarity=0.103 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCcc-eeecCCCCHHHHHHHhcCCCceEEecccccccc-chhhhhHHHHHHhCCeeeecccCC
Q 020083 128 TIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYSPLG 199 (331)
Q Consensus 128 ~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~gi~v~a~spl~ 199 (331)
.++.+.+|+++..+. +.|=+-++...+..++....++++|+.....-. ....++...|+++|+.++..+...
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~ 300 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLE 300 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcch
Confidence 466777777775554 445566788888888887778888887655421 113678999999999988654443
No 79
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=54.95 E-value=46 Score=31.39 Aligned_cols=211 Identities=18% Similarity=0.139 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHH---HHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHH
Q 020083 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLG---KAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCE 100 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG---~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 100 (331)
+.++..+.|+.|.+.|++.+=|+=+...+..+..+. +.++..+...+.|..=+.+..-. .-..+.+.+
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~----~lg~~~~dl----- 82 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLK----KLGISYDDL----- 82 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHH----TTT-BTTBT-----
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHH----HcCCCHHHH-----
Confidence 578899999999999999998887775432232222 22222133445555444322100 001111111
Q ss_pred HHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCHHHHHHHhcCC-CceEEeccccccccc---
Q 020083 101 ASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVH-PITAVQMEWSLWTRD--- 176 (331)
Q Consensus 101 ~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~-~~~~~q~~~n~~~~~--- 176 (331)
..++.||++. +=| |.-...++ +.+|-++|.--.+=.|+.+.+.+..+.+.. .++-+..-.|.+-+.
T Consensus 83 ~~~~~lGi~~---lRl---D~Gf~~~~----ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~TG 152 (357)
T PF05913_consen 83 SFFKELGIDG---LRL---DYGFSGEE----IAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYTG 152 (357)
T ss_dssp HHHHHHT-SE---EEE---SSS-SCHH----HHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-S
T ss_pred HHHHHcCCCE---EEE---CCCCCHHH----HHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCCC
Confidence 1234555332 211 22222222 233333366666677887888888887764 344344444544332
Q ss_pred ----hhhhhHHHHHHhCCeeeecccCCccccCCCCccCCCCCCcccccCcCCCCcchhhHHHHHHHHHHHHHHcCCCHHH
Q 020083 177 ----IEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQ 252 (331)
Q Consensus 177 ----~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q 252 (331)
...+.-.+.++.|+.+.|+=|-- +...|+ ..+..| .+ ++|.--+..
T Consensus 153 Ls~~~f~~~n~~~k~~gi~~~AFI~g~-~~~rGP-l~~GLP--------------Tl--------------E~hR~~~p~ 202 (357)
T PF05913_consen 153 LSEEFFIEKNQLLKEYGIKTAAFIPGD-ENKRGP-LYEGLP--------------TL--------------EKHRNLPPY 202 (357)
T ss_dssp B-HHHHHHHHHHHHHTT-EEEEEE--S-SS-BTT-T-S--B--------------SB--------------GGGTTS-HH
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEecCC-CcccCC-ccCCCC--------------cc--------------HHHcCCCHH
Confidence 11455667889999999976643 222221 000111 01 133334556
Q ss_pred HHHHHHHcCCCCeEeecCCC--CHHHHHHHHhc
Q 020083 253 LALAWVLGQGDDVVPIPGTT--KIKNLDDNIDS 283 (331)
Q Consensus 253 lal~~~l~~~~v~~vi~G~~--~~~~l~enl~a 283 (331)
+|...+...+.+.-|++|-. +.+.+++....
T Consensus 203 ~aa~~L~~~~~iD~V~IGD~~~s~~el~~~~~~ 235 (357)
T PF05913_consen 203 AAALELFALGLIDDVIIGDPFASEEELKQLAQY 235 (357)
T ss_dssp HHHHHHHHTTT--EEEE-SC---HHHHHHHHHC
T ss_pred HHHHHHHhcCCCCEEEECCCcCCHHHHHHHHHH
Confidence 67888888888899999865 55555554443
No 80
>PTZ00413 lipoate synthase; Provisional
Probab=54.50 E-value=1.9e+02 Score=27.56 Aligned_cols=160 Identities=14% Similarity=0.240 Sum_probs=85.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCccCcC----CChHHHHHHHHhhcCC--CCcEEEEeeecccCCCCCCcccCCChHHH
Q 020083 22 PVSEEDGISMIKHAFSKGITFFDTADVYG----QNANETLLGKAFKMLP--REKVQIATKFGVVGLRDNGVIVKGTPDYV 95 (331)
Q Consensus 22 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg----~g~sE~~lG~~L~~~~--R~~~~I~tK~~~~~~~~~~~~~~~s~~~i 95 (331)
.+|.++..++-+.+.+.|++|+=.+.... +|.++.+ .+.++..+ ..++.|..=+|-.. .+.+
T Consensus 176 ~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~-a~~I~~Ir~~~p~~~IevligDf~---------g~~e-- 243 (398)
T PTZ00413 176 PLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHV-ARCVELIKESNPELLLEALVGDFH---------GDLK-- 243 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHH-HHHHHHHHccCCCCeEEEcCCccc---------cCHH--
Confidence 36888888888888999999774443333 2334433 34444321 22455544443110 0232
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCC-----------CCCCHHHHHHHHHHHHHc--CCcce-----eecCCCCHHHHHHH
Q 020083 96 RSCCEASLKRLDVDYIDLYYQHRVD-----------TSVPIEETIGEMKKLVEE--GKIKY-----IGLSEASPDTIRRA 157 (331)
Q Consensus 96 ~~~~~~sL~~L~~d~iDl~~lH~~~-----------~~~~~~~~~~~l~~l~~~--G~ir~-----iGvS~~~~~~l~~~ 157 (331)
+|++|.---+|.| -|+.. ....+++.++.|+..++. |.|.- +|+.....+.++-+
T Consensus 244 ------~l~~L~eAG~dvy-nHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m 316 (398)
T PTZ00413 244 ------SVEKLANSPLSVY-AHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTL 316 (398)
T ss_pred ------HHHHHHhcCCCEE-ecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHH
Confidence 3333333335544 34432 123578889999988874 33322 46555443333222
Q ss_pred --hcCCCceEEec-ccc-----------ccccchhhhhHHHHHHhCCeeeecccCCc
Q 020083 158 --HGVHPITAVQM-EWS-----------LWTRDIEEEIIPLCRELGIGIVPYSPLGR 200 (331)
Q Consensus 158 --~~~~~~~~~q~-~~n-----------~~~~~~~~~l~~~~~~~gi~v~a~spl~~ 200 (331)
+....++++.+ +|= ++.+.....+-+.+.+.|...++.+||.+
T Consensus 317 ~dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVR 373 (398)
T PTZ00413 317 RDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVR 373 (398)
T ss_pred HHHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 22234444433 110 01112226788888899999999999875
No 81
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=54.31 E-value=1.2e+02 Score=28.91 Aligned_cols=120 Identities=16% Similarity=0.192 Sum_probs=70.9
Q ss_pred HHHHHHcCCcceeecCCCCHH----HHHHHhcCCCceEEeccccccccchhhhhHHHHHHhCCee---eecccCCccccC
Q 020083 132 MKKLVEEGKIKYIGLSEASPD----TIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGI---VPYSPLGRGFFG 204 (331)
Q Consensus 132 l~~l~~~G~ir~iGvS~~~~~----~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v---~a~spl~~G~L~ 204 (331)
=.+++++-.||.+|+=..+-. ..++.+...--+...+-.++-+.. .+ .|-++|..| |.++||. |+..
T Consensus 163 P~~~y~~~gIRrYGFHGtSh~YVs~~aa~~L~k~~~~l~~I~~HLGNGA---Si--cAiknGkSvDTSMGfTPLe-Gl~M 236 (396)
T COG0282 163 PYELYEKYGIRRYGFHGTSHKYVSQRAAEILGKPLEDLNLITCHLGNGA---SI--CAIKNGKSVDTSMGFTPLE-GLMM 236 (396)
T ss_pred CHHHHHhcCceecccCccchHHHHHHHHHHhCCCccccCEEEEEecCch---hh--hhhhCCeeeccCCCCCccc-ceec
Confidence 347888889999999765543 344445444235566666665542 11 233666554 5688988 7777
Q ss_pred CCCccCCCCCCcccccCcCCCCcchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeEeecCCC-CHHHHHHHHh
Q 020083 205 GKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTT-KIKNLDDNID 282 (331)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~-~~~~l~enl~ 282 (331)
|.++++--| ..+.-++++.|+|+.|+.---.-..+ ..-|.|-+ +.-.|+++.+
T Consensus 237 GTRsGdiDP-----------------------~ii~~l~~~~~~s~~~i~~~LNkkSG--llGlSg~ssD~R~l~~~~~ 290 (396)
T COG0282 237 GTRSGDIDP-----------------------GIILYLMEQEGMSAEEIDTLLNKKSG--LLGLSGLSSDMRDLEEAAA 290 (396)
T ss_pred cCCCCCCCh-----------------------HHHHHHHHhcCCCHHHHHHHHhhhcc--ccccccccchHHHHHHHhc
Confidence 764432222 26778888999999996543332222 34455533 3555555543
No 82
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=54.05 E-value=1.8e+02 Score=26.82 Aligned_cols=109 Identities=16% Similarity=0.078 Sum_probs=59.5
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEeccCCCCC-CHHHHHHHHHHHHHcCCcceeecCC---------CCHHHHHHHhcC
Q 020083 91 TPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGLSE---------ASPDTIRRAHGV 160 (331)
Q Consensus 91 s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvS~---------~~~~~l~~~~~~ 160 (331)
+.+.+.+.++...+..+ +.-+.|-.=|+.. +...+.+.++.+++.|.+..+.+.+ .+.+.++.+.+.
T Consensus 120 ~~~e~~~~i~~i~~~~~---I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~ 196 (321)
T TIGR03822 120 SPAELDAAFAYIADHPE---IWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS 196 (321)
T ss_pred CHHHHHHHHHHHHhCCC---ccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc
Confidence 44555555543332222 3334455445543 3356777788888888776454432 234445544443
Q ss_pred CCceEEecccccccc--chhhhhHHHHHHhCCeeeecccCCccc
Q 020083 161 HPITAVQMEWSLWTR--DIEEEIIPLCRELGIGIVPYSPLGRGF 202 (331)
Q Consensus 161 ~~~~~~q~~~n~~~~--~~~~~l~~~~~~~gi~v~a~spl~~G~ 202 (331)
.....+.++.|-... ..-.+.++.+++.||.+...+++..|.
T Consensus 197 g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 197 GKTVYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred CCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 322233344331110 111467778889999999998988774
No 83
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=53.28 E-value=85 Score=29.75 Aligned_cols=87 Identities=14% Similarity=0.228 Sum_probs=56.8
Q ss_pred EEEeccCCCC-----------CCHHHHHHHHHHHHHcCCccee--------ecCCCCHHHH---HHHhcCC------Cce
Q 020083 113 LYYQHRVDTS-----------VPIEETIGEMKKLVEEGKIKYI--------GLSEASPDTI---RRAHGVH------PIT 164 (331)
Q Consensus 113 l~~lH~~~~~-----------~~~~~~~~~l~~l~~~G~ir~i--------GvS~~~~~~l---~~~~~~~------~~~ 164 (331)
.+.||.|+.. -+++++++++++..++.. |.| || |.+.++. .++++.. +..
T Consensus 231 AiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~-rrit~EYvLi~gv-NDs~e~A~~L~~llk~~~~~~~l~~~ 308 (371)
T PRK14461 231 AISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTR-RRVSFEYVLLQGK-NDHPEQAAALARLLRGEAPPGPLLVH 308 (371)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhC-CEEEEEEEEECCC-CCCHHHHHHHHHHHcCCccccCCceE
Confidence 4678999753 257899999998754432 233 33 4455554 4445544 568
Q ss_pred EEeccccccccc----hh----hhhHHHHHHhCCeeeecccCCcc
Q 020083 165 AVQMEWSLWTRD----IE----EEIIPLCRELGIGIVPYSPLGRG 201 (331)
Q Consensus 165 ~~q~~~n~~~~~----~~----~~l~~~~~~~gi~v~a~spl~~G 201 (331)
++-++||+.... +. ....+..+++||.+......+.-
T Consensus 309 VNLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~D 353 (371)
T PRK14461 309 VNLIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGVE 353 (371)
T ss_pred EEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcC
Confidence 999999996432 11 45666677899999988777643
No 84
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=53.18 E-value=1.4e+02 Score=29.42 Aligned_cols=67 Identities=9% Similarity=0.082 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcce----eecCCCCHHHHHHHhcC---CCceEEeccccccccchhhhhHHHHHHhCC
Q 020083 122 SVPIEETIGEMKKLVEEGKIKY----IGLSEASPDTIRRAHGV---HPITAVQMEWSLWTRDIEEEIIPLCRELGI 190 (331)
Q Consensus 122 ~~~~~~~~~~l~~l~~~G~ir~----iGvS~~~~~~l~~~~~~---~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi 190 (331)
....++..++++.+++.|..-. +|+-+.+.+.+++.++. ..++ +..++++.+-+...+.+.+++.+.
T Consensus 319 ~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~--~~~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 319 GTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPD--QANWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCC--ceEEEEecCCCCcHHHHHHHhhcc
Confidence 3456788899999999997443 36667777777665432 2333 334456666555677777777653
No 85
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=52.88 E-value=65 Score=30.34 Aligned_cols=74 Identities=9% Similarity=0.032 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcCCcc-eeecCCCCHHHHHHHhcCCCceEEecccccccc-chhhhhHHHHHHhCCeeeecccCCcc
Q 020083 128 TIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYSPLGRG 201 (331)
Q Consensus 128 ~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~gi~v~a~spl~~G 201 (331)
.++.+.+|++...+. ..|=|-++..++..++....++++|+.....-. .....+...|+.+|+.++..+.+..|
T Consensus 226 d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 226 NREALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGP 301 (368)
T ss_pred cHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhH
Confidence 366677777766554 566677888888888888778889887665322 11267899999999998876544433
No 86
>PRK15108 biotin synthase; Provisional
Probab=52.83 E-value=2e+02 Score=26.95 Aligned_cols=105 Identities=13% Similarity=0.176 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCc-CC-ChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHH
Q 020083 23 VSEEDGISMIKHAFSKGITFFDTADVY-GQ-NANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCE 100 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gin~~DtA~~Y-g~-g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 100 (331)
.+.++..+..+.+.+.|++-|-..... .. ...-+.+-+.++..+.-.+.++.-.|. .+.+.+.
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~-----------ls~e~l~---- 140 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGT-----------LSESQAQ---- 140 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCc-----------CCHHHHH----
Confidence 577888888888889999988432221 11 112245555555432222333222332 1333332
Q ss_pred HHHHHcCCCcccEEEeccC------CCCCCHHHHHHHHHHHHHcCCcce
Q 020083 101 ASLKRLDVDYIDLYYQHRV------DTSVPIEETIGEMKKLVEEGKIKY 143 (331)
Q Consensus 101 ~sL~~L~~d~iDl~~lH~~------~~~~~~~~~~~~l~~l~~~G~ir~ 143 (331)
-|+..|+|++.+.+=-.| -....+++.++.++.+++.|.--.
T Consensus 141 -~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~ 188 (345)
T PRK15108 141 -RLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVC 188 (345)
T ss_pred -HHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 355667665433211111 122357889999999999997444
No 87
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=52.36 E-value=57 Score=29.20 Aligned_cols=78 Identities=15% Similarity=0.091 Sum_probs=51.4
Q ss_pred CHH-HHHHHHHHHHHcCCCeEeCccCcCC-ChHH---HHHHHHhhcC-CCCcEEEEeeecccCCCCCCcccCCChHHHHH
Q 020083 24 SEE-DGISMIKHAFSKGITFFDTADVYGQ-NANE---TLLGKAFKML-PREKVQIATKFGVVGLRDNGVIVKGTPDYVRS 97 (331)
Q Consensus 24 ~~~-~~~~~l~~A~~~Gin~~DtA~~Yg~-g~sE---~~lG~~L~~~-~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~ 97 (331)
+.+ +...+.+.|.+.|..|+=|+..|+. |-+. ++|-+.+++. ..++ |--|. .++ =.+.+....
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~~--vgIKA----sGG-----Irt~~~A~~ 212 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAKT--VGFKP----AGG-----VRTAEDAAQ 212 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCCC--eeEEc----cCC-----CCCHHHHHH
Confidence 445 4788999999999999999999974 4333 3444444321 0122 22333 111 117888888
Q ss_pred HHHHHHHHcCCCccc
Q 020083 98 CCEASLKRLDVDYID 112 (331)
Q Consensus 98 ~~~~sL~~L~~d~iD 112 (331)
-++.--+.||.++++
T Consensus 213 ~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 213 YLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHhChhhcC
Confidence 999999999988865
No 88
>COG0218 Predicted GTPase [General function prediction only]
Probab=52.07 E-value=1.5e+02 Score=25.39 Aligned_cols=112 Identities=12% Similarity=0.003 Sum_probs=73.3
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHHHHHHc------CCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCC
Q 020083 8 LGLGCMNLSSGYSSPVSEEDGISMIKHAFSK------GITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGL 81 (331)
Q Consensus 8 lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~------Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~ 81 (331)
-|||-+... ..-.+.-.+++...++. .|-.+|.-..-- ..++-+=++|......=++|.||..-
T Consensus 78 PGYGyAkv~-----k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~--~~D~em~~~l~~~~i~~~vv~tK~DK--- 147 (200)
T COG0218 78 PGYGYAKVP-----KEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPK--DLDREMIEFLLELGIPVIVVLTKADK--- 147 (200)
T ss_pred CCcccccCC-----HHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCc--HHHHHHHHHHHHcCCCeEEEEEcccc---
Confidence 377766541 11233445666666543 555677554332 35677788888777778899999963
Q ss_pred CCCCcccCCChHHHHHHHHHHHHHcCCCcccE--EEeccCCCCCCHHHHHHHHHHHHH
Q 020083 82 RDNGVIVKGTPDYVRSCCEASLKRLDVDYIDL--YYQHRVDTSVPIEETIGEMKKLVE 137 (331)
Q Consensus 82 ~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl--~~lH~~~~~~~~~~~~~~l~~l~~ 137 (331)
....+..+.+....+.|+.+..|- +++........+++++..+.+...
T Consensus 148 --------i~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 148 --------LKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred --------CChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 356677788888888998777665 455555455567888888777654
No 89
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=51.95 E-value=80 Score=30.51 Aligned_cols=61 Identities=11% Similarity=-0.068 Sum_probs=39.1
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeccCCCC------C-CHHH---HH-HHHHHHHHcCCcceeecCCCCH
Q 020083 89 KGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS------V-PIEE---TI-GEMKKLVEEGKIKYIGLSEASP 151 (331)
Q Consensus 89 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~------~-~~~~---~~-~~l~~l~~~G~ir~iGvS~~~~ 151 (331)
..+.+.+.+.++..+ .|+.+++.+|.+.-.... . +.++ .+ .+.+.|.+.|. +.+++++|..
T Consensus 204 ~qt~e~~~~~l~~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy-~~yei~~far 275 (430)
T PRK08208 204 GQTHASWMESLDQAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGY-TQTSMRMFRR 275 (430)
T ss_pred CCCHHHHHHHHHHHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCC-eEEeecceec
Confidence 347888888888776 589999999987532211 0 1112 22 34456777785 5689998864
No 90
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=51.72 E-value=70 Score=31.16 Aligned_cols=60 Identities=20% Similarity=0.304 Sum_probs=37.8
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEe-ccCC----------CCC-CHHHH---H-HHHHHHHHcCCcceeecCCCCH
Q 020083 90 GTPDYVRSCCEASLKRLDVDYIDLYYQ-HRVD----------TSV-PIEET---I-GEMKKLVEEGKIKYIGLSEASP 151 (331)
Q Consensus 90 ~s~~~i~~~~~~sL~~L~~d~iDl~~l-H~~~----------~~~-~~~~~---~-~~l~~l~~~G~ir~iGvS~~~~ 151 (331)
.+.+.+.+.++..++ |+.+++.+|.+ +.|. ... +.++. + .+.+.|.+.|. ..+++++|..
T Consensus 215 qt~e~~~~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~ 290 (455)
T TIGR00538 215 QTKESFAKTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAK 290 (455)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 478888888886654 89999999977 2221 001 12222 2 23445666775 6799999863
No 91
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=51.42 E-value=1.8e+02 Score=29.83 Aligned_cols=44 Identities=11% Similarity=0.211 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHcCCCCeEeecCCCCHHHHHHHH
Q 020083 237 FRIENLAKKYKC------TSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNI 281 (331)
Q Consensus 237 ~~l~~ia~~~g~------s~~qlal~~~l~~~~v~~vi~G~~~~~~l~enl 281 (331)
.+|.++|++.|. ++.++.-.|+-... .+.+..|+|+|+.+-+.+
T Consensus 222 ~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~-~vgitagaStP~~~i~~v 271 (647)
T PRK00087 222 TKLYEICKSNCTNTIHIENAGELPEEWFKGVK-IIGVTAGASTPDWIIEEV 271 (647)
T ss_pred HHHHHHHHHHCCCEEEECChHHCCHHHhCCCC-EEEEEeccCCCHHHHHHH
Confidence 378888888874 68899889987654 477889999999776553
No 92
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=51.36 E-value=1.3e+02 Score=27.38 Aligned_cols=103 Identities=12% Similarity=0.053 Sum_probs=58.6
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCHHHHHHHhcCCCceEEec
Q 020083 89 KGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQM 168 (331)
Q Consensus 89 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~ 168 (331)
.++.+...+ +-+.|.++|+++|.+-.++.|...-...+.++.+..+.+...++..++. .....++.+++.. ++.+.+
T Consensus 22 ~~s~e~k~~-ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g-~~~v~i 98 (287)
T PRK05692 22 FIPTADKIA-LIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAG-ADEVAV 98 (287)
T ss_pred CcCHHHHHH-HHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcC-CCEEEE
Confidence 456665554 4455899999999998666554222222345556665544445555554 3667777766542 222222
Q ss_pred cccc--c------ccch------hhhhHHHHHHhCCeeee
Q 020083 169 EWSL--W------TRDI------EEEIIPLCRELGIGIVP 194 (331)
Q Consensus 169 ~~n~--~------~~~~------~~~l~~~~~~~gi~v~a 194 (331)
-.+. . .+.. -.+.+++++++|+.+.+
T Consensus 99 ~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 99 FASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 2211 1 1111 15789999999988753
No 93
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=51.34 E-value=82 Score=30.05 Aligned_cols=60 Identities=13% Similarity=0.020 Sum_probs=38.2
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEecc-CCC----------C-C-CHHH---HH-HHHHHHHHcCCcceeecCCCC
Q 020083 89 KGTPDYVRSCCEASLKRLDVDYIDLYYQHR-VDT----------S-V-PIEE---TI-GEMKKLVEEGKIKYIGLSEAS 150 (331)
Q Consensus 89 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~-~~~----------~-~-~~~~---~~-~~l~~l~~~G~ir~iGvS~~~ 150 (331)
..+.+.+++.++..++ |+.++|.+|.+.- |.. . . +.++ .+ .+.+.|.+.|.. .+++|||.
T Consensus 173 gqt~e~~~~~l~~~~~-l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~-~yeis~fa 249 (390)
T PRK06582 173 GQTLKDWQEELKQAMQ-LATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYF-RYEISNYA 249 (390)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCc-eeeceeee
Confidence 4478889999998886 8999999998863 311 0 0 1111 12 233456667764 46888875
No 94
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=50.38 E-value=63 Score=26.43 Aligned_cols=74 Identities=16% Similarity=0.052 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEee-ecccCCCCCCcccCCChHHHHHHHHH
Q 020083 23 VSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATK-FGVVGLRDNGVIVKGTPDYVRSCCEA 101 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK-~~~~~~~~~~~~~~~s~~~i~~~~~~ 101 (331)
...+...-.+++|-+.||.+|=.|..||. +-.-+-+.+.. . =++++.|- .|.... ....+.+.+++
T Consensus 11 NT~~tle~a~erA~elgik~~vVAS~tG~--tA~k~lemveg-~-lkvVvVthh~Gf~e~---------g~~e~~~E~~~ 77 (186)
T COG1751 11 NTDETLEIAVERAKELGIKHIVVASSTGY--TALKALEMVEG-D-LKVVVVTHHAGFEEK---------GTQEMDEEVRK 77 (186)
T ss_pred chHHHHHHHHHHHHhcCcceEEEEecccH--HHHHHHHhccc-C-ceEEEEEeecccccC---------CceecCHHHHH
Confidence 34555677888899999999999999994 44333344432 2 23444444 454422 33446667788
Q ss_pred HHHHcCCC
Q 020083 102 SLKRLDVD 109 (331)
Q Consensus 102 sL~~L~~d 109 (331)
-|+..|.+
T Consensus 78 ~L~erGa~ 85 (186)
T COG1751 78 ELKERGAK 85 (186)
T ss_pred HHHHcCce
Confidence 88888843
No 95
>PRK06424 transcription factor; Provisional
Probab=50.12 E-value=51 Score=26.73 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=42.4
Q ss_pred hhhhHHHHHHhCCeeeec---ccCCcc--ccCCCCc--cCCCCCCcccccCcCCCCcchhhHHHHHHHHHHHHHHcCCCH
Q 020083 178 EEEIIPLCRELGIGIVPY---SPLGRG--FFGGKAV--VESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTS 250 (331)
Q Consensus 178 ~~~l~~~~~~~gi~v~a~---spl~~G--~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~ 250 (331)
+..+-+.|.+.|..|..+ +|...- ....... .........+ ....+.....+......+.|+.+.++.|+|.
T Consensus 22 ~l~vC~~Ca~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~g~~Ir~lRe~~GLSQ 100 (144)
T PRK06424 22 ILNVCDDCAKFGTPVIEHNKFKEVKEDIKVKLPEKKIIVPTYKKAYKK-YKKKASDEDLDIVEDYAELVKNARERLSMSQ 100 (144)
T ss_pred eeehhHHHHHcCCcccccCCCCcccccccccCccccccccccccCCCC-ccCcccHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 457888999999999998 555421 1100000 0000000000 0001111112223445567888888899999
Q ss_pred HHHHHHHHHc
Q 020083 251 AQLALAWVLG 260 (331)
Q Consensus 251 ~qlal~~~l~ 260 (331)
.++|-+--.+
T Consensus 101 ~eLA~~iGvs 110 (144)
T PRK06424 101 ADLAAKIFER 110 (144)
T ss_pred HHHHHHhCCC
Confidence 9988665443
No 96
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=50.04 E-value=1.5e+02 Score=28.43 Aligned_cols=83 Identities=8% Similarity=0.011 Sum_probs=59.2
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eeecCCCCHHHHHHHhcCCCceEEecccccccc-chhhhhHHHHHHh
Q 020083 111 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEEIIPLCREL 188 (331)
Q Consensus 111 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~ 188 (331)
.++.++-.|-+. +.++.+.+|++.-.+. ..|=|.++...++.+++..-++++|+.....-- ....++.+.|+.+
T Consensus 232 ~~l~~iEeP~~~----~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~ 307 (404)
T PRK15072 232 YRLFWLEDPTPA----ENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALY 307 (404)
T ss_pred cCCcEEECCCCc----cCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHc
Confidence 455566655433 2356777787776555 556677889999999988889999987665422 1236899999999
Q ss_pred CCeeeeccc
Q 020083 189 GIGIVPYSP 197 (331)
Q Consensus 189 gi~v~a~sp 197 (331)
|+.++.++.
T Consensus 308 gi~~~~h~~ 316 (404)
T PRK15072 308 QVRTGSHGP 316 (404)
T ss_pred CCceeeccC
Confidence 999998654
No 97
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=50.03 E-value=86 Score=29.57 Aligned_cols=60 Identities=13% Similarity=0.017 Sum_probs=36.0
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEec-cCCCC------------CCHHH----HHHHHHHHHHcCCcceeecCCCC
Q 020083 89 KGTPDYVRSCCEASLKRLDVDYIDLYYQH-RVDTS------------VPIEE----TIGEMKKLVEEGKIKYIGLSEAS 150 (331)
Q Consensus 89 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lH-~~~~~------------~~~~~----~~~~l~~l~~~G~ir~iGvS~~~ 150 (331)
..+.+.+.+.++.. .+|+.+++.+|.+. .|... .+.+. .-.+.+.|.+.|. ..+++++|.
T Consensus 163 gqt~~~~~~~l~~~-~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~~~~~~fa 239 (377)
T PRK08599 163 GQTIEDFKESLAKA-LALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGF-HQYEISNFA 239 (377)
T ss_pred CCCHHHHHHHHHHH-HccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCC-cEeeeeeee
Confidence 34788888887764 66899999888654 22100 01111 1234556777775 467888875
No 98
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=49.30 E-value=2.2e+02 Score=26.45 Aligned_cols=115 Identities=17% Similarity=0.191 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcCC----------------Ch--HHHHHHHHhhcCCCCcEEEEeeecccCCCCC
Q 020083 23 VSEEDGISMIKHAFSKGITFFDTADVYGQ----------------NA--NETLLGKAFKMLPREKVQIATKFGVVGLRDN 84 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~----------------g~--sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~ 84 (331)
++.+.-.++.++|-+.|+-+|=|--.+.. |+ ...+|-...+ .-+.+.+||=..
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~--~~kPiIlSTGma------- 157 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK--KGKPIILSTGMA------- 157 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh--cCCCEEEEcccc-------
Confidence 46677788999999999988866543331 11 1223322222 234566666553
Q ss_pred CcccCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCC-CCHHHH-HHHHHHHHHcCCcceeecCCCCHHHHHH
Q 020083 85 GVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEET-IGEMKKLVEEGKIKYIGLSEASPDTIRR 156 (331)
Q Consensus 85 ~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~-~~~~~~-~~~l~~l~~~G~ir~iGvS~~~~~~l~~ 156 (331)
+-++|.++++.-+++=. .|+.+||..... .+.+++ +.+|..|++.= ---||+|.|+...+.-
T Consensus 158 ------~~~ei~~av~~~r~~g~---~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~ 221 (347)
T COG2089 158 ------TIEEIEEAVAILRENGN---PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAP 221 (347)
T ss_pred ------cHHHHHHHHHHHHhcCC---CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHH
Confidence 56677877776555433 399999987543 344443 45555555443 5678999998764433
No 99
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=49.19 E-value=1.8e+02 Score=26.09 Aligned_cols=106 Identities=12% Similarity=0.137 Sum_probs=0.0
Q ss_pred cCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCH------HHHHHHHHHHHH-cCCcceeecCCCCHHHHHHHhcC
Q 020083 88 VKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPI------EETIGEMKKLVE-EGKIKYIGLSEASPDTIRRAHGV 160 (331)
Q Consensus 88 ~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~------~~~~~~l~~l~~-~G~ir~iGvS~~~~~~l~~~~~~ 160 (331)
..++.+...+-++. |.++|+|+|++-+.......... .+.++.+..+.+ +-++..+.-..-.....-.....
T Consensus 15 ~~f~~~~~~~ia~~-L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 93 (266)
T cd07944 15 WDFGDEFVKAIYRA-LAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASG 93 (266)
T ss_pred ccCCHHHHHHHHHH-HHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhc
Q ss_pred CCceEEeccccccccchhhhhHHHHHHhCCeeee
Q 020083 161 HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVP 194 (331)
Q Consensus 161 ~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a 194 (331)
..++.+.+.+..-.-..-.+.++.++++|+.+..
T Consensus 94 ~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~ 127 (266)
T cd07944 94 SVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFF 127 (266)
T ss_pred CCcCEEEEecccccHHHHHHHHHHHHHCCCeEEE
No 100
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=49.10 E-value=43 Score=24.04 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 020083 230 DRNKNIYFRIENLAKKYKCTSAQLALAWV 258 (331)
Q Consensus 230 ~~~~~~~~~l~~ia~~~g~s~~qlal~~~ 258 (331)
++..+.+.+|.++|++.|++..++|...+
T Consensus 48 ~~V~~sl~kL~~La~~N~v~feeLc~YAL 76 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFEELCVYAL 76 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45778889999999999999999986554
No 101
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=48.80 E-value=1.2e+02 Score=28.64 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=20.4
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEec
Q 020083 90 GTPDYVRSCCEASLKRLDVDYIDLYYQH 117 (331)
Q Consensus 90 ~s~~~i~~~~~~sL~~L~~d~iDl~~lH 117 (331)
.+.+.+.+.++..+ .++.+++.+|.+.
T Consensus 163 qt~e~~~~~l~~~~-~l~~~~is~y~l~ 189 (374)
T PRK05799 163 QTLEDWKETLEKVV-ELNPEHISCYSLI 189 (374)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccE
Confidence 37788888777665 5788888888765
No 102
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=48.49 E-value=2e+02 Score=25.76 Aligned_cols=156 Identities=12% Similarity=0.094 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHcCCCeEeCccCcCCChHHHHH--HHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHH
Q 020083 26 EDGISMIKHAFSKGITFFDTADVYGQNANETLL--GKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASL 103 (331)
Q Consensus 26 ~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~l--G~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 103 (331)
+...+.++..-+.|+.++..++.=+.+..+..+ ++.|++...-+. |..... .+.++..+...+...
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~-i~Hlt~----------r~~n~~~l~~~L~~~- 82 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPT-VPHLTC----------IGATREEIREILREY- 82 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCe-eEEeee----------cCCCHHHHHHHHHHH-
Confidence 445555666567799999998765543344443 333442111111 111111 134677777777644
Q ss_pred HHcCCCcccEEEeccCCC-------CCCHHHHHHHHHHHHHcCCcceeecCCCCH---------HHHHHHhcC----CCc
Q 020083 104 KRLDVDYIDLYYQHRVDT-------SVPIEETIGEMKKLVEEGKIKYIGLSEASP---------DTIRRAHGV----HPI 163 (331)
Q Consensus 104 ~~L~~d~iDl~~lH~~~~-------~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~---------~~l~~~~~~----~~~ 163 (331)
..+|++ +++.|-...+ ...+..+.+.++.+++..---.||+..++- .+++.+.+. ..+
T Consensus 83 ~~~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f 160 (272)
T TIGR00676 83 RELGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADY 160 (272)
T ss_pred HHCCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCe
Confidence 777754 2343433221 122344555555555542235788776431 233333322 334
Q ss_pred eEEeccccccccchhhhhHHHHHHhCCeeeecccCCccc
Q 020083 164 TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGF 202 (331)
Q Consensus 164 ~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~ 202 (331)
-+-|.-|+. ..-.++++.|++.|+.+ |+--|+
T Consensus 161 ~iTQ~~fd~---~~~~~~~~~~~~~gi~~----PIi~Gi 192 (272)
T TIGR00676 161 AITQLFFDN---DDYYRFVDRCRAAGIDV----PIIPGI 192 (272)
T ss_pred EeeccccCH---HHHHHHHHHHHHcCCCC----CEeccc
Confidence 455555543 33367888999997765 444454
No 103
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=48.40 E-value=2.3e+02 Score=26.31 Aligned_cols=152 Identities=15% Similarity=0.143 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCC--C-----hHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHH
Q 020083 24 SEEDGISMIKHAFSKGITFFDTADVYGQ--N-----ANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVR 96 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~--g-----~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~ 96 (331)
+.++..+.++.+.+.|++.|=.--..+. + +..+.+ +++++.-.+++-|.-=. . ..++++...
T Consensus 120 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v-~avr~~~g~~~~l~vDa--n--------~~~~~~~A~ 188 (341)
T cd03327 120 DLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELV-RAIREAVGYDVDLMLDC--Y--------MSWNLNYAI 188 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHH-HHHHHHhCCCCcEEEEC--C--------CCCCHHHHH
Confidence 5566777788888999998864311111 1 112222 23333211222222111 1 123554433
Q ss_pred HHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eeecCCCCHHHHHHHhcCCCceEEecccccccc
Q 020083 97 SCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR 175 (331)
Q Consensus 97 ~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~ 175 (331)
+ -+++|. ..++.++-.|-+. +.++.+.+|+++..+. +.|=+.++...++.++....++++|+..+..--
T Consensus 189 ~----~~~~l~--~~~~~~iEeP~~~----~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GG 258 (341)
T cd03327 189 K----MARALE--KYELRWIEEPLIP----DDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGG 258 (341)
T ss_pred H----HHHHhh--hcCCccccCCCCc----cCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCC
Confidence 2 223332 2466666666543 3466677777776665 555567789999999988889999988665422
Q ss_pred -chhhhhHHHHHHhCCeeeecc
Q 020083 176 -DIEEEIIPLCRELGIGIVPYS 196 (331)
Q Consensus 176 -~~~~~l~~~~~~~gi~v~a~s 196 (331)
....++...|+.+|+.++.++
T Consensus 259 it~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 259 ITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred HHHHHHHHHHHHHcCCeecccc
Confidence 123689999999999987653
No 104
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=48.22 E-value=82 Score=32.06 Aligned_cols=76 Identities=12% Similarity=0.146 Sum_probs=52.1
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecC-CCCHHHHHHHhcCCCceEEecc
Q 020083 91 TPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHGVHPITAVQME 169 (331)
Q Consensus 91 s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~ 169 (331)
+.+.++.+ ..+|.|++=+.+..........+.+...+.+......+..+||. |-+++.+.++.+...++++|++
T Consensus 12 ~~eda~~a-----~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLH 86 (610)
T PRK13803 12 DSALISKA-----VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLH 86 (610)
T ss_pred cHHHHHHH-----HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 44555544 45899999998666544555555524444443333357789995 7789999999988999999997
Q ss_pred cc
Q 020083 170 WS 171 (331)
Q Consensus 170 ~n 171 (331)
-+
T Consensus 87 G~ 88 (610)
T PRK13803 87 GA 88 (610)
T ss_pred CC
Confidence 54
No 105
>PRK14017 galactonate dehydratase; Provisional
Probab=47.56 E-value=1.5e+02 Score=28.12 Aligned_cols=84 Identities=12% Similarity=0.106 Sum_probs=59.4
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eeecCCCCHHHHHHHhcCCCceEEecccccccc-chhhhhHHHHHHh
Q 020083 111 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEEIIPLCREL 188 (331)
Q Consensus 111 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~ 188 (331)
+++.++-.|-+.. .++.+.+|.++..+. ..|=|.++...++.+++...++++|+..+..-- .....+.+.|+++
T Consensus 203 ~~~~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~ 278 (382)
T PRK14017 203 YRPMFIEEPVLPE----NAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAY 278 (382)
T ss_pred cCCCeEECCCCcC----CHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHc
Confidence 3455555554332 256677887776655 555567889999999888888999988665422 1236899999999
Q ss_pred CCeeeecccC
Q 020083 189 GIGIVPYSPL 198 (331)
Q Consensus 189 gi~v~a~spl 198 (331)
||.++.++..
T Consensus 279 gi~~~~h~~~ 288 (382)
T PRK14017 279 DVALAPHCPL 288 (382)
T ss_pred CCeEeecCCC
Confidence 9999987553
No 106
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=46.92 E-value=1.3e+02 Score=25.49 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=25.8
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCHHH
Q 020083 111 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDT 153 (331)
Q Consensus 111 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~ 153 (331)
+|.+|||..++ .+.++.+.+......++.+|++.+....
T Consensus 74 ~d~Vqlhg~e~----~~~~~~l~~~~~~~~i~~i~~~~~~~~~ 112 (203)
T cd00405 74 LDVVQLHGDES----PEYCAQLRARLGLPVIKAIRVKDEEDLE 112 (203)
T ss_pred CCEEEECCCCC----HHHHHHHHhhcCCcEEEEEecCChhhHH
Confidence 78999998752 2344445444445688899999875443
No 107
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=46.77 E-value=78 Score=28.31 Aligned_cols=66 Identities=18% Similarity=0.190 Sum_probs=49.5
Q ss_pred CCChHHHHHHHHHHHHHcC--------------------------CCcccEEEeccCCCCCCH---HHHHHHHHHHHHcC
Q 020083 89 KGTPDYVRSCCEASLKRLD--------------------------VDYIDLYYQHRVDTSVPI---EETIGEMKKLVEEG 139 (331)
Q Consensus 89 ~~s~~~i~~~~~~sL~~L~--------------------------~d~iDl~~lH~~~~~~~~---~~~~~~l~~l~~~G 139 (331)
.++++. ++.++++|++.| ....|+++|..|..-.+. .++++.|.+|+++|
T Consensus 111 ~~~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg 189 (254)
T COG1121 111 RLNKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEG 189 (254)
T ss_pred cccHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 345555 788999999988 366899999999766543 56789999999997
Q ss_pred CcceeecCCCCHHHHHHH
Q 020083 140 KIKYIGLSEASPDTIRRA 157 (331)
Q Consensus 140 ~ir~iGvS~~~~~~l~~~ 157 (331)
+ .|=+.+|+...+.+.
T Consensus 190 ~--tIl~vtHDL~~v~~~ 205 (254)
T COG1121 190 K--TVLMVTHDLGLVMAY 205 (254)
T ss_pred C--EEEEEeCCcHHhHhh
Confidence 5 566677777766554
No 108
>smart00642 Aamy Alpha-amylase domain.
Probab=46.70 E-value=33 Score=28.40 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=17.6
Q ss_pred hhhhHHHHHHhCCeeeecccCC
Q 020083 178 EEEIIPLCRELGIGIVPYSPLG 199 (331)
Q Consensus 178 ~~~l~~~~~~~gi~v~a~spl~ 199 (331)
.+.+++.|+++||.|+.=-++.
T Consensus 72 ~~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 72 FKELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHHCCCEEEEEECCC
Confidence 3789999999999999744443
No 109
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=46.50 E-value=33 Score=27.28 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=20.9
Q ss_pred cchhhhhHHHHHHhCCeeeecccCC
Q 020083 175 RDIEEEIIPLCRELGIGIVPYSPLG 199 (331)
Q Consensus 175 ~~~~~~l~~~~~~~gi~v~a~spl~ 199 (331)
++...++++.|++.||.|++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 4455899999999999999986665
No 110
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=45.93 E-value=2.2e+02 Score=25.34 Aligned_cols=104 Identities=18% Similarity=0.184 Sum_probs=57.1
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeccCCC-----CCCHHHHHHHHHHHHHc-CCcceeecC---CCCHHHHHHHhc
Q 020083 89 KGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-----SVPIEETIGEMKKLVEE-GKIKYIGLS---EASPDTIRRAHG 159 (331)
Q Consensus 89 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~-----~~~~~~~~~~l~~l~~~-G~ir~iGvS---~~~~~~l~~~~~ 159 (331)
.++.+...+-++ .|.++|+++|.+-+...... .-+....++.++.+++. +..+...++ ......++.+.+
T Consensus 18 ~~~~~~k~~i~~-~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 96 (263)
T cd07943 18 QFTLEQVRAIAR-ALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAAD 96 (263)
T ss_pred ecCHHHHHHHHH-HHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHH
Confidence 556666665555 48999999999985532110 00111234455555332 346665554 223566666654
Q ss_pred CCCceEEeccccccccchhhhhHHHHHHhCCeeee
Q 020083 160 VHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVP 194 (331)
Q Consensus 160 ~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a 194 (331)
. .++.+.+-.+.-+-..-.+.++.++++|+.+..
T Consensus 97 ~-g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~ 130 (263)
T cd07943 97 L-GVDVVRVATHCTEADVSEQHIGAARKLGMDVVG 130 (263)
T ss_pred c-CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEE
Confidence 3 455554433332222236788899999987654
No 111
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=45.79 E-value=1.9e+02 Score=24.58 Aligned_cols=145 Identities=16% Similarity=0.126 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcC----CCCcEEEEeeecccCCCCCCcccCCChHHHHHHH
Q 020083 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKML----PREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCC 99 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~----~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~ 99 (331)
|.+++.+++..+++.|+...|.- +..+..+++.. .+++++++-= .+..+.++..+
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i~--------~~~l~p~m~~vG~~w~~~~i~va~e-------------~~as~~~~~~l 67 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDII--------EEGLAPGMDIVGDKYEEGEIFVPEL-------------LMAADAMKAGL 67 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHccCCeeHHHH-------------HHHHHHHHHHH
Confidence 78899999999999998655432 33344444321 3344444211 11233344444
Q ss_pred HHHHHHcCCCc---ccEEEeccCCCCCCHHHHHHHHHHHHHcCCc-ceeecCCCCHHHHHHHhcCCCceEEecccccccc
Q 020083 100 EASLKRLDVDY---IDLYYQHRVDTSVPIEETIGEMKKLVEEGKI-KYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR 175 (331)
Q Consensus 100 ~~sL~~L~~d~---iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~ 175 (331)
..-...+.... ---+++-.+..+.+--...=.-.-|+..|.= .++| .+.+.+.+.+......++++-+..+.-..
T Consensus 68 ~~l~~~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~~~~d~v~lS~~~~~~ 146 (201)
T cd02070 68 DLLKPLLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKEHKPDILGLSALMTTT 146 (201)
T ss_pred HHHHHHHhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEecccccc
Confidence 44444443221 1133444443333322222223345667753 5677 55577777777777777777776654433
Q ss_pred ch-hhhhHHHHHHhCC
Q 020083 176 DI-EEEIIPLCRELGI 190 (331)
Q Consensus 176 ~~-~~~l~~~~~~~gi 190 (331)
.. -.++++..++.+.
T Consensus 147 ~~~~~~~i~~lr~~~~ 162 (201)
T cd02070 147 MGGMKEVIEALKEAGL 162 (201)
T ss_pred HHHHHHHHHHHHHCCC
Confidence 22 2677788887753
No 112
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=45.57 E-value=2.4e+02 Score=25.75 Aligned_cols=182 Identities=17% Similarity=0.168 Sum_probs=89.1
Q ss_pred ccccccccCCCCCC-CCCCHHHHHHHHHHHHH-cCCCeEeCccCcCCC---hHHHHHHHHhhcC--CCCcEEEEeeeccc
Q 020083 7 KLGLGCMNLSSGYS-SPVSEEDGISMIKHAFS-KGITFFDTADVYGQN---ANETLLGKAFKML--PREKVQIATKFGVV 79 (331)
Q Consensus 7 ~lglG~~~~~~~~~-~~~~~~~~~~~l~~A~~-~Gin~~DtA~~Yg~g---~sE~~lG~~L~~~--~R~~~~I~tK~~~~ 79 (331)
.|.||++.-+. +. ...+.++..+.+...++ .|+..+|----|+.- .+-..+-++|+.. .+..+.|+.-++..
T Consensus 71 iiS~GG~~g~~-~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~l~vs~Tlp~~ 149 (294)
T cd06543 71 IVSFGGASGTP-LATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYPDLKISFTLPVL 149 (294)
T ss_pred EEEecCCCCCc-cccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 45777766321 22 22355555555555554 499999865444321 1224455666553 33456666666433
Q ss_pred CCCCCCcccCCChHHHHHHHHHHHHHcC--CCcccEEEeccCCC--CCC-HHHHHHHHHHHHHcCCcceeecCCCCHHHH
Q 020083 80 GLRDNGVIVKGTPDYVRSCCEASLKRLD--VDYIDLYYQHRVDT--SVP-IEETIGEMKKLVEEGKIKYIGLSEASPDTI 154 (331)
Q Consensus 80 ~~~~~~~~~~~s~~~i~~~~~~sL~~L~--~d~iDl~~lH~~~~--~~~-~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l 154 (331)
+. .++++.+ .+-++.+.-| +|+|.++-+..-.. ..+ -+.++.+++.++.+=+--+=+ ++..++
T Consensus 150 p~-------gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~---~s~~~~ 217 (294)
T cd06543 150 PT-------GLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPK---LSDAEL 217 (294)
T ss_pred CC-------CCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccC---CCHHHH
Confidence 21 2233322 2444444555 35666655543322 122 245556665555442222212 333343
Q ss_pred HHHhcCCCce-EEeccccccccchhhhhHHHHHHhCCeeeecccCCcc
Q 020083 155 RRAHGVHPIT-AVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRG 201 (331)
Q Consensus 155 ~~~~~~~~~~-~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 201 (331)
-..+...|.- .+=..=.++.......+.+|++++||+.++|-.+.+-
T Consensus 218 ~~~ig~TpMiG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~RD 265 (294)
T cd06543 218 WAMIGVTPMIGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNRD 265 (294)
T ss_pred HHHccccccccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccCC
Confidence 3334433321 1100001233322378999999999999998777653
No 113
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=45.55 E-value=2.2e+02 Score=25.30 Aligned_cols=116 Identities=16% Similarity=0.160 Sum_probs=62.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEeCccC-----------cCCChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccC
Q 020083 21 SPVSEEDGISMIKHAFSKGITFFDTADV-----------YGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVK 89 (331)
Q Consensus 21 ~~~~~~~~~~~l~~A~~~Gin~~DtA~~-----------Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~ 89 (331)
...+.++..++++...+.||..++.+.. |..-..++.+.+..+..+..++.+..-.+ .
T Consensus 17 ~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~-----------~ 85 (263)
T cd07943 17 HQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPG-----------I 85 (263)
T ss_pred eecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCC-----------c
Confidence 3467899999999999999999999721 21112455555544432333332221000 1
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecC---CCCHHHHHHH
Q 020083 90 GTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS---EASPDTIRRA 157 (331)
Q Consensus 90 ~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS---~~~~~~l~~~ 157 (331)
...+. ++..++ .|+|.+-++. ...+...+.+.++..++.|.--.+.++ .++++.+.++
T Consensus 86 ~~~~~----i~~a~~-~g~~~iri~~-----~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~ 146 (263)
T cd07943 86 GTVDD----LKMAAD-LGVDVVRVAT-----HCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQ 146 (263)
T ss_pred cCHHH----HHHHHH-cCCCEEEEEe-----chhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHH
Confidence 12333 333333 3555544432 222345667778888888875555542 2455554443
No 114
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=45.51 E-value=2.4e+02 Score=25.63 Aligned_cols=153 Identities=14% Similarity=0.098 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHHHHcC-CCeEeC---ccC-----cCCChHHHHHHHHhhcC-CCCcEEEEeeecccCCCCCCcccCCChH
Q 020083 24 SEEDGISMIKHAFSKG-ITFFDT---ADV-----YGQNANETLLGKAFKML-PREKVQIATKFGVVGLRDNGVIVKGTPD 93 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~G-in~~Dt---A~~-----Yg~g~sE~~lG~~L~~~-~R~~~~I~tK~~~~~~~~~~~~~~~s~~ 93 (331)
+.++..++.+.+.+.| +..||- +++ |..+...+.+-+.++.. ..-++-|..|+... .+
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~------------~~ 169 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPN------------VT 169 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCC------------ch
Confidence 6678888888888898 999975 211 22234556666666553 11256788888632 11
Q ss_pred HHHHHHHHHHHHcCCCcccEEE-eccC--CCCC--C--------------HHHHHHHHHHHHHcCCcceeecCCC-CHHH
Q 020083 94 YVRSCCEASLKRLDVDYIDLYY-QHRV--DTSV--P--------------IEETIGEMKKLVEEGKIKYIGLSEA-SPDT 153 (331)
Q Consensus 94 ~i~~~~~~sL~~L~~d~iDl~~-lH~~--~~~~--~--------------~~~~~~~l~~l~~~G~ir~iGvS~~-~~~~ 153 (331)
.+. .+-+.|+..|.|.|++.- ++.. +... + ..-.++.+.++++.=.+-=||+... ++++
T Consensus 170 ~~~-~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~d 248 (301)
T PRK07259 170 DIV-EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAED 248 (301)
T ss_pred hHH-HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 222 233457778877776531 1111 0000 0 0124566667766656778888775 7888
Q ss_pred HHHHhcCCCceEEeccccccc-cc----hhhhhHHHHHHhCC
Q 020083 154 IRRAHGVHPITAVQMEWSLWT-RD----IEEEIIPLCRELGI 190 (331)
Q Consensus 154 l~~~~~~~~~~~~q~~~n~~~-~~----~~~~l~~~~~~~gi 190 (331)
+.+++... .+.+|+-=-++. +. ..+++-.+..++|.
T Consensus 249 a~~~l~aG-Ad~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 249 AIEFIMAG-ASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred HHHHHHcC-CCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 88877643 677776433332 21 12456666666654
No 115
>PRK09061 D-glutamate deacylase; Validated
Probab=45.48 E-value=1.9e+02 Score=28.62 Aligned_cols=113 Identities=10% Similarity=0.046 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHHHHc
Q 020083 27 DGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRL 106 (331)
Q Consensus 27 ~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L 106 (331)
+..++++.|++.|+..|=+...|-.+.+...+-+.++...+-...|.+....... .++.....++++.++..
T Consensus 170 ~m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~--------~~~~~e~~av~~~i~lA 241 (509)
T PRK09061 170 EILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLSN--------VDPRSSVDAYQELIAAA 241 (509)
T ss_pred HHHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCccc--------CCchhHHHHHHHHHHHH
Confidence 3677888999999999987666754456666666665544445666665532210 01122223344444322
Q ss_pred CCCcccEEEeccCCC-CCCHHHHHHHHHHHHHcCCcceeecC
Q 020083 107 DVDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLS 147 (331)
Q Consensus 107 ~~d~iDl~~lH~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvS 147 (331)
...-.-+...|-... ..+..+.++.+++++++|.--..-++
T Consensus 242 ~~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~ 283 (509)
T PRK09061 242 AETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAY 283 (509)
T ss_pred HHhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEec
Confidence 211233666675432 23467888999999999854444443
No 116
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=44.93 E-value=47 Score=22.56 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=19.6
Q ss_pred hhhHHHHHH------HHHHHHHHcCCCHHHHH
Q 020083 229 LDRNKNIYF------RIENLAKKYKCTSAQLA 254 (331)
Q Consensus 229 ~~~~~~~~~------~l~~ia~~~g~s~~qla 254 (331)
.+..++.+. .+.+||+++|+++.+|-
T Consensus 9 rdkA~e~y~~~~g~i~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 9 RDKAFEIYKESNGKIKLKDIAEKLGVSESTIR 40 (60)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHCCCHHHHH
Confidence 344455554 68999999999999875
No 117
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=44.08 E-value=2e+02 Score=26.66 Aligned_cols=72 Identities=11% Similarity=0.115 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCcc-eeecCCCCHHHHHHHhcCCCceEEeccccccccchhhhhHHHHHHhCCeeeecccCCccc
Q 020083 129 IGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGF 202 (331)
Q Consensus 129 ~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~ 202 (331)
++.+.+++++-.+. +.|=|-++...+..++.....+++|+..+.+-. -.+.++.|+++|+.++..+.+..++
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GG--it~~lkiA~~~gi~v~v~s~~es~i 245 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGG--VRAALDIAEQIGLPVVVSSALDTSV 245 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCC--HHHHHHHHHHcCCcEEEeCCcccHH
Confidence 45566665553222 233345677788888877788888888765433 2467778999999999887775543
No 118
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=43.71 E-value=1.5e+02 Score=25.80 Aligned_cols=80 Identities=13% Similarity=0.216 Sum_probs=49.7
Q ss_pred CHHHHHHHhcCCCceEE----eccccccccchh---hhhHHHHHHhCCeeeecccCCccccCCCCccCCCCCCcccccCc
Q 020083 150 SPDTIRRAHGVHPITAV----QMEWSLWTRDIE---EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFP 222 (331)
Q Consensus 150 ~~~~l~~~~~~~~~~~~----q~~~n~~~~~~~---~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~ 222 (331)
++.+++.+.+...+.++ -.+||.++.... .++.++++.-|-.-+.+-|+..|-..+.
T Consensus 50 p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~---------------- 113 (272)
T COG4130 50 PAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGT---------------- 113 (272)
T ss_pred CHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCc----------------
Confidence 45555555554443333 236666665322 6799999999988888888876532111
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHcCC
Q 020083 223 RYKGENLDRNKNIYFRIENLAKKYKC 248 (331)
Q Consensus 223 ~~~~~~~~~~~~~~~~l~~ia~~~g~ 248 (331)
....+.....++.|+.|-+++|+
T Consensus 114 ---~vr~~~lv~AlkaLkpil~~~gi 136 (272)
T COG4130 114 ---AVRREDLVEALKALKPILDEYGI 136 (272)
T ss_pred ---ccchHHHHHHHHHhhHHHHHhCc
Confidence 01124456777888888888876
No 119
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=43.33 E-value=2.8e+02 Score=25.95 Aligned_cols=136 Identities=13% Similarity=0.086 Sum_probs=79.5
Q ss_pred CCCcEEEEeeecccCCC------CCCcccCCChHHHHHHHHHHHHHcCCCcccEEEecc-CCCCCCHHHHHHHHHHHHHc
Q 020083 66 PREKVQIATKFGVVGLR------DNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHR-VDTSVPIEETIGEMKKLVEE 138 (331)
Q Consensus 66 ~R~~~~I~tK~~~~~~~------~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~-~~~~~~~~~~~~~l~~l~~~ 138 (331)
.|-.++|+|-+|....- ..+.....++++|..++....+.++. .++-+.+-. =.+....+.++++++.+.+.
T Consensus 99 ~r~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~-~~~~IvfmGmGEPlln~~~v~~~i~~l~~~ 177 (345)
T PRK14457 99 KRLTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQR-RVSHVVFMGMGEPLLNIDEVLAAIRCLNQD 177 (345)
T ss_pred CCCEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcC-CCCEEEEEecCccccCHHHHHHHHHHHhcc
Confidence 46778888888775432 11234468999999999988877753 355444433 44555578889999998875
Q ss_pred -CC-cceeecCCCC-HHHHHHHhcCC------CceEEeccccccccchh----------------hhhHHHHHHhCCeee
Q 020083 139 -GK-IKYIGLSEAS-PDTIRRAHGVH------PITAVQMEWSLWTRDIE----------------EEIIPLCRELGIGIV 193 (331)
Q Consensus 139 -G~-ir~iGvS~~~-~~~l~~~~~~~------~~~~~q~~~n~~~~~~~----------------~~l~~~~~~~gi~v~ 193 (331)
|. .|.|-+|+.. +..++++.... ....+.+..|..+.... ..+.++..+.|..|+
T Consensus 178 ~~i~~r~itvST~G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~ 257 (345)
T PRK14457 178 LGIGQRRITVSTVGVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVS 257 (345)
T ss_pred cCCccCceEEECCCchhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEE
Confidence 33 3565566542 34455555432 11234444444443211 233455556677776
Q ss_pred ecccCCccc
Q 020083 194 PYSPLGRGF 202 (331)
Q Consensus 194 a~spl~~G~ 202 (331)
.--|+-.|+
T Consensus 258 iey~LIpGv 266 (345)
T PRK14457 258 FEYILLGGV 266 (345)
T ss_pred EEEEEECCc
Confidence 665666553
No 120
>PRK05414 urocanate hydratase; Provisional
Probab=43.22 E-value=62 Score=31.83 Aligned_cols=117 Identities=20% Similarity=0.251 Sum_probs=78.5
Q ss_pred HHHHHHHHcCCCeEe--CccCcC--------CChHHHHHHHHhhcC---CCCcEEEEeeecccCCCCC---------Ccc
Q 020083 30 SMIKHAFSKGITFFD--TADVYG--------QNANETLLGKAFKML---PREKVQIATKFGVVGLRDN---------GVI 87 (331)
Q Consensus 30 ~~l~~A~~~Gin~~D--tA~~Yg--------~g~sE~~lG~~L~~~---~R~~~~I~tK~~~~~~~~~---------~~~ 87 (331)
+-.++.-+.|+.-+= ||-+|. .|--|+++..+=+.. .+.++||++=+|......+ ...
T Consensus 116 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~ 195 (556)
T PRK05414 116 EHFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFGGDLAGRLVLTAGLGGMGGAQPLAATMAGAVCLA 195 (556)
T ss_pred HHHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcCCCCceeEEEEecCCccccccHHHHHhcCceEEE
Confidence 344556667877663 665552 154555554333322 5778999998886643321 112
Q ss_pred cCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCHHHHHHHhcC
Q 020083 88 VKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV 160 (331)
Q Consensus 88 ~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 160 (331)
...++..|+ +|+.+.|+|.+ ..+++++++..++.+++|+...||+-.--++.+.++.+.
T Consensus 196 vEvd~~ri~-------kR~~~gyld~~-------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~ 254 (556)
T PRK05414 196 VEVDESRID-------KRLRTGYLDEK-------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRR 254 (556)
T ss_pred EEECHHHHH-------HHHhCCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHc
Confidence 233444444 78888998874 246899999999999999999999988788888887765
No 121
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=43.21 E-value=2.4e+02 Score=25.12 Aligned_cols=99 Identities=19% Similarity=0.179 Sum_probs=61.7
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEE-EeccCCCC-CCHH-H---HHHHHHHHHHc-CCcceeecCCCCHHHHHHHhcCCC
Q 020083 90 GTPDYVRSCCEASLKRLDVDYIDLY-YQHRVDTS-VPIE-E---TIGEMKKLVEE-GKIKYIGLSEASPDTIRRAHGVHP 162 (331)
Q Consensus 90 ~s~~~i~~~~~~sL~~L~~d~iDl~-~lH~~~~~-~~~~-~---~~~~l~~l~~~-G~ir~iGvS~~~~~~l~~~~~~~~ 162 (331)
.+++.+.+.+++.+ .-|.++||+- .--+|+.. .+.+ | +...++.+++. +. -+.+-++.++.++++++..
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G- 95 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAG- 95 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcC-
Confidence 46677777666554 5588999994 22234332 1222 2 44555566555 43 3788889999999998774
Q ss_pred ceEEeccccccccchhhhhHHHHHHhCCeeeecc
Q 020083 163 ITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 196 (331)
Q Consensus 163 ~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~s 196 (331)
.+.+ ...+... ..++++.++++|.+++.+.
T Consensus 96 ~~iI-Nsis~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 96 ADII-NDVSGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred CCEE-EECCCCC---CchhHHHHHHcCCcEEEEe
Confidence 3322 1222222 3578899999999999854
No 122
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=42.39 E-value=63 Score=31.65 Aligned_cols=117 Identities=21% Similarity=0.269 Sum_probs=78.3
Q ss_pred HHHHHHHHcCCCeEe--CccCcC--------CChHHHHHHHHhhcC---CCCcEEEEeeecccCCCCC---------Ccc
Q 020083 30 SMIKHAFSKGITFFD--TADVYG--------QNANETLLGKAFKML---PREKVQIATKFGVVGLRDN---------GVI 87 (331)
Q Consensus 30 ~~l~~A~~~Gin~~D--tA~~Yg--------~g~sE~~lG~~L~~~---~R~~~~I~tK~~~~~~~~~---------~~~ 87 (331)
+-.++.-+.|+.-+= ||-+|. .|--|+++..+=+.+ .+.++|+++=+|......+ ...
T Consensus 107 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~ 186 (545)
T TIGR01228 107 EHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGSLKGKWVLTAGLGGMGGAQPLAVTMNGGVSIA 186 (545)
T ss_pred HHHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCCCceeEEEEeCCCccccccHHHHHHcCceEEE
Confidence 345556677877663 665542 154555554333322 4678999998876643221 112
Q ss_pred cCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCHHHHHHHhcC
Q 020083 88 VKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV 160 (331)
Q Consensus 88 ~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 160 (331)
...++..|+ +|+.+.|+|.+ ..+++++++..++.+++|+...||+-.--++.+.++.+.
T Consensus 187 vEvd~~ri~-------kR~~~gyld~~-------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r 245 (545)
T TIGR01228 187 VEVDESRID-------KRLETKYCDEQ-------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKR 245 (545)
T ss_pred EEECHHHHH-------HHHhcCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHc
Confidence 233444444 68888998874 246899999999999999999999988888888888764
No 123
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=42.35 E-value=56 Score=28.50 Aligned_cols=100 Identities=16% Similarity=0.229 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHHcCCcceeec----CCCCHHHHHHHhcCCCceEEeccccccccchhhhhHHHHHHhCCeeeecccCC
Q 020083 124 PIEETIGEMKKLVEEGKIKYIGL----SEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 199 (331)
Q Consensus 124 ~~~~~~~~l~~l~~~G~ir~iGv----S~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~ 199 (331)
.+++..++|..++ +..|.. |.+....++.+.+...+. .|.++-.....+++...-+.|..++.-++-+
T Consensus 74 eve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~----~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa 145 (223)
T COG2102 74 EVEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLK----VYAPLWGRDPEELLEEMVEAGFEAIIVAVSA 145 (223)
T ss_pred hHHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCE----EeecccCCCHHHHHHHHHHcCCeEEEEEEec
Confidence 4566677777776 555544 334444455554444443 2334433333677777778888877777777
Q ss_pred ccccCCCCccCCCCCCcccccCcCCCCcchhhHHHHHHHHHHHHHHcCCCHH
Q 020083 200 RGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSA 251 (331)
Q Consensus 200 ~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~ 251 (331)
.|+-.. +.+..+ ..+.++.+..++++||+.|+
T Consensus 146 ~gL~~~------------------~lGr~i--~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 146 EGLDES------------------WLGRRI--DREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred cCCChH------------------HhCCcc--CHHHHHHHHHHHHhcCCCcc
Confidence 775210 000011 23456789999999998764
No 124
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=41.99 E-value=2.1e+02 Score=26.15 Aligned_cols=86 Identities=12% Similarity=0.007 Sum_probs=54.7
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCC-cceeecCCCCHHHHHHHhcCCCceEEecccccccc-chhhhhHHHHHHh
Q 020083 111 IDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEEIIPLCREL 188 (331)
Q Consensus 111 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~ 188 (331)
.++.++-.|-+.. +.+..+.++-. =-..|=|-++...+..++.....+++|+.....-. ....++.+.|+.+
T Consensus 183 ~~i~~iEqP~~~~------~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~ 256 (307)
T TIGR01927 183 GRIAFLEEPLPDA------DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRL 256 (307)
T ss_pred CCceEEeCCCCCH------HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHc
Confidence 3555555554221 45555555432 22334455677888888877777888887665322 1236899999999
Q ss_pred CCeeeecccCCccc
Q 020083 189 GIGIVPYSPLGRGF 202 (331)
Q Consensus 189 gi~v~a~spl~~G~ 202 (331)
|+.++..+.+..|+
T Consensus 257 gi~~~~~~~~es~i 270 (307)
T TIGR01927 257 GLQAVFSSVFESSI 270 (307)
T ss_pred CCCEEEECccchHH
Confidence 99999877666543
No 125
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=41.94 E-value=60 Score=31.70 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=44.9
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecC-CCCHHHHHHHhcCCCceEEecccc
Q 020083 103 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHGVHPITAVQMEWS 171 (331)
Q Consensus 103 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~n 171 (331)
...+|.|++=+.+........+.+.+-+....+. ++.+||. |-+++.+.++.+...++++|++-+
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~----v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~ 338 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP----LRYVGVFRNADIEDIVDIAKQLSLAAVQLHGD 338 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC----CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCC
Confidence 4568999998875443334444444333333332 8889996 678999999888899999999865
No 126
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=41.87 E-value=1.4e+02 Score=27.35 Aligned_cols=148 Identities=14% Similarity=0.109 Sum_probs=81.0
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEeccCCCC----CCHHHHHHHHHHHHHcCCcceeecCCCCHHHH---HHHhcCCCc
Q 020083 91 TPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS----VPIEETIGEMKKLVEEGKIKYIGLSEASPDTI---RRAHGVHPI 163 (331)
Q Consensus 91 s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~----~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l---~~~~~~~~~ 163 (331)
..+.+++.+.+-+++.++|++=++.+-.-.+. ....+++++|++..+++.-. .++..+ ..+..-.+|
T Consensus 130 ~~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~------~~aS~~YA~AAl~~g~~f 203 (295)
T PF07994_consen 130 QVEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE------ISASMLYAYAALEAGVPF 203 (295)
T ss_dssp HHHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT------HHHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc------CChHHHHHHHHHHCCCCe
Confidence 35667888999999999876544444332221 12335678888877765422 122222 222222233
Q ss_pred eEEeccccccccchhhhhHHHHHHhCCeeeecccCCccccCCCCccCCCCCCcccccCcCCCCcchhhHHHHHHHHHHHH
Q 020083 164 TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLA 243 (331)
Q Consensus 164 ~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia 243 (331)
++=.+-+..+ ...+.+.++++|+.+..- .++..+.....--+-++.++|
T Consensus 204 -vN~tP~~~a~---~P~l~ela~~~gvpi~Gd---------------------------D~KT~lAAplvlDLirl~~la 252 (295)
T PF07994_consen 204 -VNGTPSNIAD---DPALVELAEEKGVPIAGD---------------------------DGKTPLAAPLVLDLIRLAKLA 252 (295)
T ss_dssp -EE-SSSTTTT---SHHHHHHHHHHTEEEEES---------------------------SBS-HHHHHHHHHHHHHHHHH
T ss_pred -EeccCccccC---CHHHHHHHHHcCCCeecc---------------------------hHhhhhhhHHHHHHHHHHHHH
Confidence 2222322221 247899999999998751 111111223344456889999
Q ss_pred HHcCCCHHHHHHHHHHcCCCCeEeecCCCCHHHHH
Q 020083 244 KKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLD 278 (331)
Q Consensus 244 ~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~ 278 (331)
.+.|+.-.+-.++|.+.+|. +=.|......+.
T Consensus 253 ~r~g~~Gv~~~ls~ffK~P~---~~~g~~~~~~l~ 284 (295)
T PF07994_consen 253 LRRGMGGVQEWLSFFFKSPM---VPPGPPQEHDLF 284 (295)
T ss_dssp HHTTS-EEHHHHHHHBSS-T-----TTSTT--HHH
T ss_pred HHcCCCChhHHHHHHhcCCC---ccCCCCCCCcHH
Confidence 99999888889999999984 235555555553
No 127
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=41.84 E-value=2.8e+02 Score=25.47 Aligned_cols=93 Identities=17% Similarity=0.273 Sum_probs=63.1
Q ss_pred HHHcCCCcccEEEeccCCC-----CCCHHHHHHHHHHHHHcCCcce-eecCCC---CHHHHHHHhcCCCc-eEEeccccc
Q 020083 103 LKRLDVDYIDLYYQHRVDT-----SVPIEETIGEMKKLVEEGKIKY-IGLSEA---SPDTIRRAHGVHPI-TAVQMEWSL 172 (331)
Q Consensus 103 L~~L~~d~iDl~~lH~~~~-----~~~~~~~~~~l~~l~~~G~ir~-iGvS~~---~~~~l~~~~~~~~~-~~~q~~~n~ 172 (331)
.++.| .|++-+|-... +.+.+++.+.|+++.|.=+|=- ||=|.. ++..++++.+...= .+.-..-|+
T Consensus 160 Vk~fg---admvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSanl 236 (403)
T COG2069 160 VKKFG---ADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASANL 236 (403)
T ss_pred HHHhC---CceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeecccc
Confidence 35777 67888886632 3567899999999888877654 466654 56778777665322 223223332
Q ss_pred cccchhhhhHHHHHHhCCeeeecccCCc
Q 020083 173 WTRDIEEEIIPLCRELGIGIVPYSPLGR 200 (331)
Q Consensus 173 ~~~~~~~~l~~~~~~~gi~v~a~spl~~ 200 (331)
+.+ .+.+.+++.++|=.|++|+++.-
T Consensus 237 -dlD-y~~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 237 -DLD-YERIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred -ccC-HHHHHHHHHhcCceEEEeeccCh
Confidence 222 26799999999999999998863
No 128
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=41.32 E-value=1.2e+02 Score=30.32 Aligned_cols=51 Identities=16% Similarity=0.267 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeccCC---CCCCHHHHHHHHHHHHHcCCcceeec
Q 020083 93 DYVRSCCEASLKRLDVDYIDLYYQHRVD---TSVPIEETIGEMKKLVEEGKIKYIGL 146 (331)
Q Consensus 93 ~~i~~~~~~sL~~L~~d~iDl~~lH~~~---~~~~~~~~~~~l~~l~~~G~ir~iGv 146 (331)
+...+-|+..++..+-.+.+ -|-.. ....+.+.+.-|.+++++|+||.+.+
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~---~~~ivvGFs~~~il~a~d~lielI~sGkIKgv~~ 413 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSE---KHKIVVGFSHESILAAADPLIELIASGKIKGVVV 413 (576)
T ss_pred hhHHHHHHHHHhccCCcccc---cceeEEeecHHHHHHHHHHHHHHHhcCCcceEEE
Confidence 56777888888888877777 22221 11234556677889999999999844
No 129
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=41.13 E-value=1.1e+02 Score=26.48 Aligned_cols=98 Identities=19% Similarity=0.200 Sum_probs=53.8
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCHHHHHHHhc---CCCceE
Q 020083 89 KGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHG---VHPITA 165 (331)
Q Consensus 89 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~---~~~~~~ 165 (331)
.++.+...+-++ .|.++|+++|++- .|.......+.++.+.+.... .+-.+++......++...+ ...++.
T Consensus 10 ~~~~~~k~~i~~-~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 10 AFSTEEKLEIAK-ALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp T--HHHHHHHHH-HHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSE
T ss_pred CcCHHHHHHHHH-HHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCE
Confidence 356666555555 5999999999887 332222223455556655555 4444555556666655333 233333
Q ss_pred Eeccccccc--c------------chhhhhHHHHHHhCCee
Q 020083 166 VQMEWSLWT--R------------DIEEEIIPLCRELGIGI 192 (331)
Q Consensus 166 ~q~~~n~~~--~------------~~~~~l~~~~~~~gi~v 192 (331)
+.+..+.-+ . ..-.+.+.+++++|+.+
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 333222211 1 01157889999999988
No 130
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=40.78 E-value=2.1e+02 Score=23.58 Aligned_cols=97 Identities=19% Similarity=0.099 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCC-cEEEEeeecccCCCCCCcccCCChHHHHHHHHHH
Q 020083 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPRE-KVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEAS 102 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~-~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 102 (331)
+.+...++++.+++.|++-+-+.. ..+-.+.+. ..+ ++-|..+++..... ...+...+.+++.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~-~~~~~~~v~~~v~~~~~~-------~~~~~~~~~a~~a 74 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------GYVRLAADA-LAGSDVPVIVVVGFPTGL-------TTTEVKVAEVEEA 74 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------HHHHHHHHH-hCCCCCeEEEEecCCCCC-------CcHHHHHHHHHHH
Confidence 678899999999999999887653 233333222 234 57777788754211 1244455555544
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHH
Q 020083 103 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVE 137 (331)
Q Consensus 103 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~ 137 (331)
.++|.|.+.+..-+........+++.+.++++.+
T Consensus 75 -~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~ 108 (201)
T cd00945 75 -IDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVE 108 (201)
T ss_pred -HHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHH
Confidence 4557555444321111111113455555555544
No 131
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=40.39 E-value=3.2e+02 Score=25.76 Aligned_cols=132 Identities=14% Similarity=0.154 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeE-----eCccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHH
Q 020083 23 VSEEDGISMIKHAFSKGITFF-----DTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRS 97 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gin~~-----DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~ 97 (331)
.+.++..+.++.+.+.|++.| ++..... -..+-+.++...+.---|..+.+.. +.+.+
T Consensus 104 ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~----~e~l~~~i~~Ik~~~p~i~i~~g~l-----------t~e~l-- 166 (371)
T PRK09240 104 LDEEEIEREMAAIKKLGFEHILLLTGEHEAKVG----VDYIRRALPIAREYFSSVSIEVQPL-----------SEEEY-- 166 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCC----HHHHHHHHHHHHHhCCCceeccCCC-----------CHHHH--
Q ss_pred HHHHHHHHcCCCcccEEE----------eccCCCCCCHHHHHHHHHHHHHcCCccee------ecCCCC------HHHHH
Q 020083 98 CCEASLKRLDVDYIDLYY----------QHRVDTSVPIEETIGEMKKLVEEGKIKYI------GLSEAS------PDTIR 155 (331)
Q Consensus 98 ~~~~sL~~L~~d~iDl~~----------lH~~~~~~~~~~~~~~l~~l~~~G~ir~i------GvS~~~------~~~l~ 155 (331)
+-|+..|++++-+.+ +|.......+++.+++++.+++.| ++.+ |+..+. +.+++
T Consensus 167 ---~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG-~~~v~~g~i~Glge~~~d~~~~a~~l~ 242 (371)
T PRK09240 167 ---AELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAG-IRKIGLGALLGLSDWRTDALMTALHLR 242 (371)
T ss_pred ---HHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcC-CCeeceEEEecCCccHHHHHHHHHHHH
Q ss_pred HHhcCCCceEEecccccccc
Q 020083 156 RAHGVHPITAVQMEWSLWTR 175 (331)
Q Consensus 156 ~~~~~~~~~~~q~~~n~~~~ 175 (331)
++....+-.-..+++|.+.+
T Consensus 243 ~L~~~~~~~~~sv~~~~l~P 262 (371)
T PRK09240 243 YLQRKYWQAEYSISFPRLRP 262 (371)
T ss_pred HHHHhCCCCceeeecCcccc
No 132
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=40.35 E-value=2.4e+02 Score=24.34 Aligned_cols=99 Identities=19% Similarity=0.164 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHH
Q 020083 23 VSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEAS 102 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 102 (331)
.+.++..++++.|.+.|+.-+=..+.| -....+.|+ ...+-|+|=+|.+.+.. +.+.-...+++.
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~p~~-----v~~a~~~l~---~~~v~v~tVigFP~G~~-------~~~~K~~E~~~A 79 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVNPSY-----VPLAKELLK---GTEVRICTVVGFPLGAS-------TTDVKLYETKEA 79 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeCHHH-----HHHHHHHcC---CCCCeEEEEeCCCCCCC-------cHHHHHHHHHHH
Confidence 478899999999999998877666554 334444554 24688888888765432 333444445554
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHH
Q 020083 103 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVE 137 (331)
Q Consensus 103 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~ 137 (331)
+ ++|.|-||+++--..-.....+...+.+...++
T Consensus 80 v-~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~ 113 (211)
T TIGR00126 80 I-KYGADEVDMVINIGALKDGNEEVVYDDIRAVVE 113 (211)
T ss_pred H-HcCCCEEEeecchHhhhCCcHHHHHHHHHHHHH
Confidence 4 479999999887654344456677777776665
No 133
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=40.27 E-value=3.1e+02 Score=25.54 Aligned_cols=27 Identities=7% Similarity=0.122 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEeCc
Q 020083 20 SSPVSEEDGISMIKHAFSKGITFFDTA 46 (331)
Q Consensus 20 ~~~~~~~~~~~~l~~A~~~Gin~~DtA 46 (331)
+...+.++..++++..-++||..++.+
T Consensus 19 ~~~f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 19 RHQYTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred CCccCHHHHHHHHHHHHHcCCCEEEee
Confidence 344688999999999999999999995
No 134
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=40.11 E-value=1.5e+02 Score=26.18 Aligned_cols=111 Identities=18% Similarity=0.151 Sum_probs=60.5
Q ss_pred cccccccccCCCCCCCCCCHHHHHHHHHHHHH-cCCCeEeCccC---cCCChHHHHHHHHhhcCCCCcEEEEeeecccCC
Q 020083 6 SKLGLGCMNLSSGYSSPVSEEDGISMIKHAFS-KGITFFDTADV---YGQNANETLLGKAFKMLPREKVQIATKFGVVGL 81 (331)
Q Consensus 6 s~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~-~Gin~~DtA~~---Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~ 81 (331)
|+|-+||..+ . +. +++..|++ .|-..+=+|=- .+....+..+-+.+ +++.+.+--.. .
T Consensus 9 SRL~lGTgky----~---s~----~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~~~i---~~~~~~lLPNT---a- 70 (247)
T PF05690_consen 9 SRLILGTGKY----P---SP----EVMREAIEASGAEVVTVALRRVNLGSKPGGDNILDYI---DRSGYTLLPNT---A- 70 (247)
T ss_dssp -SEEEE-STS----S---SH----HHHHHHHHHTT-SEEEEECCGSTTTS-TTCHHCCCCT---TCCTSEEEEE----T-
T ss_pred cceEEecCCC----C---CH----HHHHHHHHHhCCcEEEEEEecccCCCCCCCccHHHHh---cccCCEECCcC---C-
Confidence 7888888764 2 33 45666664 47666654421 11000122222222 44555443222 1
Q ss_pred CCCCcccCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCC-CHHHHHHHHHHHHHcCC
Q 020083 82 RDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGK 140 (331)
Q Consensus 82 ~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~-~~~~~~~~l~~l~~~G~ 140 (331)
-..+.++..+..+-..+-++++.|=|=.+..+.... +..+++++-+.|+++|-
T Consensus 71 ------Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF 124 (247)
T PF05690_consen 71 ------GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGF 124 (247)
T ss_dssp ------T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-
T ss_pred ------CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCC
Confidence 144888888889999999999988887776554432 45789999999999993
No 135
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=40.01 E-value=5.7e+02 Score=28.48 Aligned_cols=122 Identities=14% Similarity=0.068 Sum_probs=68.9
Q ss_pred HcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc-CCc--ceeecCCCCHHHHHHHhcCCCceEEecccccccc-chhhh
Q 020083 105 RLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE-GKI--KYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEE 180 (331)
Q Consensus 105 ~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~-G~i--r~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~ 180 (331)
.-|.+.||+-.= ....+-++.+..+..+.++ -.+ --|-|-++.++.++.+++..+=..+-...|.... ....+
T Consensus 379 e~GA~iIDVn~~---~~~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~~IINsIs~~~g~~~~~~ 455 (1178)
T TIGR02082 379 ENGAQILDINVD---YGMLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGKCIVNSISLKDGEERFIE 455 (1178)
T ss_pred HCCCCEEEECCC---CCCCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCCCEEEeCCCCCCCccHHH
Confidence 558899998752 1222334445554444443 212 2356667889999998876321223334444321 11247
Q ss_pred hHHHHHHhCCeeeecccCCccccCCCCccCCCCCCcccccCcCCCCcchhhHHHHHHHHHHHHHH-cCCCHHH
Q 020083 181 IIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKK-YKCTSAQ 252 (331)
Q Consensus 181 l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~-~g~s~~q 252 (331)
+++.++++|.+++.+..=..|. +...++..+.++++-+.+.+ +|+++..
T Consensus 456 ~~~l~~~yga~vV~m~~de~G~-----------------------p~t~e~r~~i~~~~~~~~~~~~Gi~~ed 505 (1178)
T TIGR02082 456 TAKLIKEYGAAVVVMAFDEEGQ-----------------------ARTADRKIEICKRAYNILTEKVGFPPED 505 (1178)
T ss_pred HHHHHHHhCCCEEEEecCCCCC-----------------------CCCHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 9999999999999874322332 11223445566666666665 8775444
No 136
>PRK12928 lipoyl synthase; Provisional
Probab=39.95 E-value=2.8e+02 Score=25.29 Aligned_cols=161 Identities=14% Similarity=0.198 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcC---CChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHH
Q 020083 23 VSEEDGISMIKHAFSKGITFFDTADVYG---QNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCC 99 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg---~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~ 99 (331)
.+.++..+.++.+.+.|++++-...... ....-..+-+.++......-.+.-++- +++.+.+ .
T Consensus 87 ~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~l-------------tp~~~~~-~ 152 (290)
T PRK12928 87 LDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVL-------------TPDFWGG-Q 152 (290)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEe-------------ccccccC-C
Q ss_pred HHHHHHcCCCcccEEEe---------ccCCCCCCHHHHHHHHHHHHHcC---Cccee---ecCCCCHHHHHHHhcC---C
Q 020083 100 EASLKRLDVDYIDLYYQ---------HRVDTSVPIEETIGEMKKLVEEG---KIKYI---GLSEASPDTIRRAHGV---H 161 (331)
Q Consensus 100 ~~sL~~L~~d~iDl~~l---------H~~~~~~~~~~~~~~l~~l~~~G---~ir~i---GvS~~~~~~l~~~~~~---~ 161 (331)
++.|+.|.-...+++.. ....+....++.++.++.+++.| .++.- |+ .-+.+++.+.+.. .
T Consensus 153 ~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel 231 (290)
T PRK12928 153 RERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAV 231 (290)
T ss_pred HHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhc
Q ss_pred CceEEec-cccc-----------cccchhhhhHHHHHHhCCeeeecccC
Q 020083 162 PITAVQM-EWSL-----------WTRDIEEEIIPLCRELGIGIVPYSPL 198 (331)
Q Consensus 162 ~~~~~q~-~~n~-----------~~~~~~~~l~~~~~~~gi~v~a~spl 198 (331)
+++.+.+ +|.. ..+.....+.+.+.+.|...++.+||
T Consensus 232 ~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p~ 280 (290)
T PRK12928 232 GCDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPL 280 (290)
T ss_pred CCCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecCc
No 137
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=39.69 E-value=65 Score=27.75 Aligned_cols=89 Identities=17% Similarity=0.239 Sum_probs=52.3
Q ss_pred HHcCCCcccEEEec-cCCCC-CC----HHHHHHHHHHHHH--cCCcceeecCCCCHHHHHHHhcCCCceEEecccccccc
Q 020083 104 KRLDVDYIDLYYQH-RVDTS-VP----IEETIGEMKKLVE--EGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR 175 (331)
Q Consensus 104 ~~L~~d~iDl~~lH-~~~~~-~~----~~~~~~~l~~l~~--~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~ 175 (331)
..-|.|+||+---- +|... .+ ++.+...++.+++ .+. -+.+-++.++.++++++. ..+++-.-.+. ..
T Consensus 29 ~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ind~~~~-~~ 104 (210)
T PF00809_consen 29 VEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADIINDISGF-ED 104 (210)
T ss_dssp HHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSEEEETTTT-SS
T ss_pred HHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-CcceEEecccc-cc
Confidence 34588999986432 33321 12 2334455555554 222 455667889999988876 44433222221 11
Q ss_pred chhhhhHHHHHHhCCeeeecccC
Q 020083 176 DIEEEIIPLCRELGIGIVPYSPL 198 (331)
Q Consensus 176 ~~~~~l~~~~~~~gi~v~a~spl 198 (331)
..++++.+++++.+++++..-
T Consensus 105 --~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 --DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp --STTHHHHHHHHTSEEEEESES
T ss_pred --cchhhhhhhcCCCEEEEEecc
Confidence 368999999999999987544
No 138
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=39.61 E-value=3.6e+02 Score=26.04 Aligned_cols=109 Identities=12% Similarity=0.141 Sum_probs=55.9
Q ss_pred ccCcCCChHHHHHHHHhhcC----CCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHHHHcCC-CcccEEEeccCC
Q 020083 46 ADVYGQNANETLLGKAFKML----PREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDV-DYIDLYYQHRVD 120 (331)
Q Consensus 46 A~~Yg~g~sE~~lG~~L~~~----~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~-d~iDl~~lH~~~ 120 (331)
.-.|| .|+-|-+++++. +.+=++|.|-+-... --+.+...+++.-++... ..+.++.++.|.
T Consensus 64 d~V~G---g~~~L~~ai~~~~~~~~p~~I~v~ttC~~~i----------iGdDi~~v~~~~~~~~~~~~~~~vi~v~tpg 130 (435)
T cd01974 64 AAVFG---GQNNLIDGLKNAYAVYKPDMIAVSTTCMAEV----------IGDDLNAFIKNAKNKGSIPADFPVPFANTPS 130 (435)
T ss_pred ceEEC---cHHHHHHHHHHHHHhcCCCEEEEeCCchHhh----------hhccHHHHHHHHHHhccCCCCCeEEEecCCC
Confidence 34677 467777777653 445567777764322 122233333322223211 137888998886
Q ss_pred CCCC----HHHHHHHHHH-HH-------HcCCcceee-cCCC-C-HHHHHHHhcCCCceEEe
Q 020083 121 TSVP----IEETIGEMKK-LV-------EEGKIKYIG-LSEA-S-PDTIRRAHGVHPITAVQ 167 (331)
Q Consensus 121 ~~~~----~~~~~~~l~~-l~-------~~G~ir~iG-vS~~-~-~~~l~~~~~~~~~~~~q 167 (331)
.... .+.++++|-+ +. +.+.|.=|| ..+. . .+.++++++...+.++.
T Consensus 131 f~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~~ 192 (435)
T cd01974 131 FVGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYTI 192 (435)
T ss_pred CccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEEE
Confidence 5532 2344444432 22 233465565 2222 2 56777777766655543
No 139
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=39.59 E-value=89 Score=29.42 Aligned_cols=88 Identities=10% Similarity=0.212 Sum_probs=53.4
Q ss_pred EEEeccCCCC-----------CCHHHHHHHHHHHHH-cCC---cceeecC--CCCHHH---HHHHhcCCCceEEeccccc
Q 020083 113 LYYQHRVDTS-----------VPIEETIGEMKKLVE-EGK---IKYIGLS--EASPDT---IRRAHGVHPITAVQMEWSL 172 (331)
Q Consensus 113 l~~lH~~~~~-----------~~~~~~~~~l~~l~~-~G~---ir~iGvS--~~~~~~---l~~~~~~~~~~~~q~~~n~ 172 (331)
.+-||.+++. -+++++++++.++.+ .|. |+++=+. |.+.++ +.++++..++.++-++||.
T Consensus 218 aiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp 297 (355)
T TIGR00048 218 AISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNP 297 (355)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEeccc
Confidence 3678998743 136888888887544 442 2333222 334444 4444554556778889998
Q ss_pred cccc----hh----hhhHHHHHHhCCeeeecccCCc
Q 020083 173 WTRD----IE----EEIIPLCRELGIGIVPYSPLGR 200 (331)
Q Consensus 173 ~~~~----~~----~~l~~~~~~~gi~v~a~spl~~ 200 (331)
+... +. ....+..+++|+.+......+.
T Consensus 298 ~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 298 FPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 6531 11 3456667788999988777654
No 140
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=39.35 E-value=3e+02 Score=25.67 Aligned_cols=103 Identities=23% Similarity=0.252 Sum_probs=57.5
Q ss_pred cCCChHHHHHHHHHHHHHcCCCcccEEEec---------cCCCCCCHHHHHHHHHHHHHcCCcceeecCC---CCHHHHH
Q 020083 88 VKGTPDYVRSCCEASLKRLDVDYIDLYYQH---------RVDTSVPIEETIGEMKKLVEEGKIKYIGLSE---ASPDTIR 155 (331)
Q Consensus 88 ~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH---------~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~---~~~~~l~ 155 (331)
+.++.+.+.+-++ .|.+.|+++|.+-..- .+.. .+-.+.++.+.+.. ...+...+.. .+.+.++
T Consensus 20 ~~f~~~~~~~i~~-~L~~aGv~~IEvg~~~g~g~~s~~~g~~~-~~~~e~i~~~~~~~--~~~~~~~ll~pg~~~~~dl~ 95 (337)
T PRK08195 20 HQYTLEQVRAIAR-ALDAAGVPVIEVTHGDGLGGSSFNYGFGA-HTDEEYIEAAAEVV--KQAKIAALLLPGIGTVDDLK 95 (337)
T ss_pred CccCHHHHHHHHH-HHHHcCCCEEEeecCCCCCCccccCCCCC-CCHHHHHHHHHHhC--CCCEEEEEeccCcccHHHHH
Confidence 4677777776555 4999999999985321 2211 12234444443332 2344444322 2466776
Q ss_pred HHhcCCCceEEeccccccccchhhhhHHHHHHhCCeeeec
Q 020083 156 RAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 195 (331)
Q Consensus 156 ~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~ 195 (331)
.+.+. .++.+.+..+.-....-.+.+++++++|+.+...
T Consensus 96 ~a~~~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 96 MAYDA-GVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHc-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 66543 3455544433322223367889999999877654
No 141
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=38.75 E-value=2.7e+02 Score=26.13 Aligned_cols=120 Identities=12% Similarity=0.208 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHHcC---CCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHH
Q 020083 23 VSEEDGISMIKHAFSKG---ITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCC 99 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~G---in~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~ 99 (331)
++.++..+++....+.- +-.+|..+..+. ..+. +-+.+. ...-++|.+|+..... ..+.+.+.+-+
T Consensus 48 ~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s-~~~~-l~~~~~--~~piilV~NK~DLl~k-------~~~~~~~~~~l 116 (360)
T TIGR03597 48 LNDDDFLNLLNSLGDSNALIVYVVDIFDFEGS-LIPE-LKRFVG--GNPVLLVGNKIDLLPK-------SVNLSKIKEWM 116 (360)
T ss_pred CCHHHHHHHHhhcccCCcEEEEEEECcCCCCC-ccHH-HHHHhC--CCCEEEEEEchhhCCC-------CCCHHHHHHHH
Confidence 45667777777665431 235576554432 1122 223332 4556789999975421 22456677667
Q ss_pred HHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCHHHH
Q 020083 100 EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTI 154 (331)
Q Consensus 100 ~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l 154 (331)
.+-++..+....+++.+.. -....++++++.+.++.+.+.|--+|.+|..-..+
T Consensus 117 ~~~~k~~g~~~~~i~~vSA-k~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStl 170 (360)
T TIGR03597 117 KKRAKELGLKPVDIILVSA-KKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSL 170 (360)
T ss_pred HHHHHHcCCCcCcEEEecC-CCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 6677777765446665543 33345789999998887777899999999876544
No 142
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=38.22 E-value=2.3e+02 Score=26.02 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHcCCCCeEeecCCCCHHHHHHHH
Q 020083 237 FRIENLAKKYKC------TSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNI 281 (331)
Q Consensus 237 ~~l~~ia~~~g~------s~~qlal~~~l~~~~v~~vi~G~~~~~~l~enl 281 (331)
.+|.++|++.+. ++.++-..|+.... .+.+..|+|+|+.+.+.+
T Consensus 226 ~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGitaGASTP~~li~eV 275 (298)
T PRK01045 226 NRLREVAEEAGAPAYLIDDASEIDPEWFKGVK-TVGVTAGASAPEWLVQEV 275 (298)
T ss_pred HHHHHHHHHHCCCEEEECChHHCcHHHhcCCC-EEEEEecCCCCHHHHHHH
Confidence 478999998874 78999999996543 577889999999887654
No 143
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=38.15 E-value=3.6e+02 Score=25.69 Aligned_cols=103 Identities=13% Similarity=0.084 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHcCCCeEeCccCcCC--ChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHH
Q 020083 26 EDGISMIKHAFSKGITFFDTADVYGQ--NANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASL 103 (331)
Q Consensus 26 ~~~~~~l~~A~~~Gin~~DtA~~Yg~--g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 103 (331)
++..++++.|++.|+.-|=+...|.. +.++..+-+.++...+-...|.+..-... ....+.+.+.++-+
T Consensus 167 ~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~--------~~e~~av~~~~~~a- 237 (415)
T cd01297 167 AKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEG--------DSILEALDELLRLG- 237 (415)
T ss_pred HHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECccc--------ccHHHHHHHHHHHH-
Confidence 34567788889999987766555533 34666676666544333455555553211 01223334433333
Q ss_pred HHcCCCcccEEEeccCCCC----CCHHHHHHHHHHHHHcCC
Q 020083 104 KRLDVDYIDLYYQHRVDTS----VPIEETIGEMKKLVEEGK 140 (331)
Q Consensus 104 ~~L~~d~iDl~~lH~~~~~----~~~~~~~~~l~~l~~~G~ 140 (331)
++.|. =++..|-.... ....++++.+++.+++|.
T Consensus 238 ~~~g~---r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~ 275 (415)
T cd01297 238 RETGR---PVHISHLKSAGAPNWGKIDRLLALIEAARAEGL 275 (415)
T ss_pred HHhCC---CEEEEEEecCCCcccchHHHHHHHHHHHHHhCC
Confidence 23342 35556654322 245666777777777764
No 144
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=37.97 E-value=1.3e+02 Score=25.95 Aligned_cols=99 Identities=20% Similarity=0.216 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHc-CCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHH
Q 020083 24 SEEDGISMIKHAFSK-GITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEAS 102 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~-Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 102 (331)
+.+++..+.+...+. |+-|...++=|= +-+...+..+..+. .++++-.. +.+.+++. +.
T Consensus 11 ~~eda~~a~~~gad~iG~If~~~SpR~V---s~~~a~~i~~~v~~-----~~~VgVf~--------n~~~~~i~----~i 70 (208)
T COG0135 11 RLEDAKAAAKAGADYIGFIFVPKSPRYV---SPEQAREIASAVPK-----VKVVGVFV--------NESIEEIL----EI 70 (208)
T ss_pred CHHHHHHHHHcCCCEEEEEEcCCCCCcC---CHHHHHHHHHhCCC-----CCEEEEEC--------CCCHHHHH----HH
Confidence 456666555553443 666666676665 44445454443221 22444432 22444443 33
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCC
Q 020083 103 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA 149 (331)
Q Consensus 103 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~ 149 (331)
++.++ +|++|||...+ .+.++.|++...-..++++.++.-
T Consensus 71 ~~~~~---ld~VQlHG~e~----~~~~~~l~~~~~~~v~kai~v~~~ 110 (208)
T COG0135 71 AEELG---LDAVQLHGDED----PEYIDQLKEELGVPVIKAISVSEE 110 (208)
T ss_pred HHhcC---CCEEEECCCCC----HHHHHHHHhhcCCceEEEEEeCCc
Confidence 44555 89999999843 244444444434568888888764
No 145
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=37.80 E-value=1.7e+02 Score=23.21 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=42.2
Q ss_pred CCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHHHHcCC----CcccEEEeccCCCC-CCHHHHHHHHHHHHH
Q 020083 66 PREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDV----DYIDLYYQHRVDTS-VPIEETIGEMKKLVE 137 (331)
Q Consensus 66 ~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~----d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~ 137 (331)
.|=-+.|+-|+|.- ..++.|++.+.++++.+.. ...|++++-.+... .+..++.+.|+.+.+
T Consensus 47 ~RvG~~VSKKvG~A----------V~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 47 PRVGFTVTKKNGNA----------VERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred cEEEEEEecccCcc----------hHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 34446677777642 3678888888888887643 45799999988654 456666666666544
No 146
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=37.74 E-value=1.7e+02 Score=28.43 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=14.6
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEe
Q 020083 91 TPDYVRSCCEASLKRLDVDYIDLYYQ 116 (331)
Q Consensus 91 s~~~i~~~~~~sL~~L~~d~iDl~~l 116 (331)
+.+.+.+.++..+ .++.+++.+|.+
T Consensus 216 t~e~~~~~l~~~~-~l~~~~i~~y~l 240 (453)
T PRK09249 216 TPESFARTLEKVL-ELRPDRLAVFNY 240 (453)
T ss_pred CHHHHHHHHHHHH-hcCCCEEEEccC
Confidence 5555655555544 366666666654
No 147
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=37.49 E-value=2.9e+02 Score=24.43 Aligned_cols=63 Identities=17% Similarity=0.086 Sum_probs=34.5
Q ss_pred HHHHHHcCCcceeec--CCCCHHHHHHHhcC-CCceEEeccccccccchhhhhHHHHHHhCCeeeec
Q 020083 132 MKKLVEEGKIKYIGL--SEASPDTIRRAHGV-HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 195 (331)
Q Consensus 132 l~~l~~~G~ir~iGv--S~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~ 195 (331)
|++..++|+. -+|+ ...++..++.+... .++.++=++.++++...-..++..++..|+.++..
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VR 68 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVR 68 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEE
Confidence 4555566775 3443 33455555544333 34445555777765533345666666667766654
No 148
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=37.16 E-value=1.6e+02 Score=26.71 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHcCCCCeEeecCCCCHHHHHHHH
Q 020083 237 FRIENLAKKYKC------TSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNI 281 (331)
Q Consensus 237 ~~l~~ia~~~g~------s~~qlal~~~l~~~~v~~vi~G~~~~~~l~enl 281 (331)
.+|.++|++.|. ++.++-..|+-... .+.+..|+|+|+.+.+.+
T Consensus 224 ~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 224 TRLYEIAEEHGPPSYLIETAEELPEEWLKGVK-VVGITAGASTPDWIIEEV 273 (280)
T ss_pred HHHHHHHHHhCCCEEEECChHHCCHHHhCCCC-EEEEEecCCCCHHHHHHH
Confidence 489999999874 78999999997654 478889999999887654
No 149
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=35.89 E-value=3.7e+02 Score=25.07 Aligned_cols=152 Identities=11% Similarity=0.074 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCC---------hHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHH
Q 020083 24 SEEDGISMIKHAFSKGITFFDTADVYGQN---------ANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDY 94 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g---------~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~ 94 (331)
+.++..+.+..+.+.|++.|=.--....+ ...+.| +++++.-.+++.|..=... .++.+.
T Consensus 123 ~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i-~avr~~~g~~~~l~vDaN~----------~~~~~~ 191 (352)
T cd03325 123 RPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERV-AALREAVGPDIDIGVDFHG----------RVSKPM 191 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHH-HHHHHhhCCCCEEEEECCC----------CCCHHH
Confidence 45566677777888999988753211100 112222 3444322223333222110 234443
Q ss_pred HHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eeecCCCCHHHHHHHhcCCCceEEecccccc
Q 020083 95 VRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLW 173 (331)
Q Consensus 95 i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~ 173 (331)
. .+-++.|. ..++.++-.|-+.. .++.+.+|+++.-+. +.|=|.++...+..++....++++|+.....
T Consensus 192 A----~~~~~~l~--~~~i~~iEeP~~~~----d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~ 261 (352)
T cd03325 192 A----KDLAKELE--PYRLLFIEEPVLPE----NVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHA 261 (352)
T ss_pred H----HHHHHhcc--ccCCcEEECCCCcc----CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCcccc
Confidence 2 23333443 24566677765433 366778887775554 4455667889998888877789999986544
Q ss_pred cc-chhhhhHHHHHHhCCeeeecc
Q 020083 174 TR-DIEEEIIPLCRELGIGIVPYS 196 (331)
Q Consensus 174 ~~-~~~~~l~~~~~~~gi~v~a~s 196 (331)
-- ....++.+.|+++|+.++.++
T Consensus 262 GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 262 GGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CCHHHHHHHHHHHHHcCCcEeccC
Confidence 21 123689999999999998654
No 150
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=35.80 E-value=4.2e+02 Score=25.75 Aligned_cols=86 Identities=10% Similarity=0.082 Sum_probs=56.7
Q ss_pred EEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eeecCCCCHHHHHHHhcCCCceEEeccccccccchhhhhHHHHHHhCCe
Q 020083 113 LYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIG 191 (331)
Q Consensus 113 l~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~ 191 (331)
+.++-.|-+..+..+-++.+.+|+++..|- ..|=+.++...++.+++..-++++|......--....++.+.|+.+|+.
T Consensus 252 ~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~kIa~lA~a~Gi~ 331 (441)
T TIGR03247 252 LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVRVAQMCHDWGLT 331 (441)
T ss_pred hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHHHHHHHHHcCCE
Confidence 456777755432112366777777665443 3355667888999988888888888875321111136899999999999
Q ss_pred eeecccC
Q 020083 192 IVPYSPL 198 (331)
Q Consensus 192 v~a~spl 198 (331)
+..++..
T Consensus 332 v~~h~~~ 338 (441)
T TIGR03247 332 WGSHSNN 338 (441)
T ss_pred EEEeCCc
Confidence 8877543
No 151
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=35.79 E-value=3.1e+02 Score=24.15 Aligned_cols=86 Identities=10% Similarity=0.030 Sum_probs=47.2
Q ss_pred HHcCCCcccEEEeccCCCCCCH-HHHHHHHHHHHHcCCcceeecCC-CCHHHHHHHhcCCCceEEeccccccccc-hhhh
Q 020083 104 KRLDVDYIDLYYQHRVDTSVPI-EETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEE 180 (331)
Q Consensus 104 ~~L~~d~iDl~~lH~~~~~~~~-~~~~~~l~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~ 180 (331)
..+| +|-+.+|..+..... .--|+.++++.+.-.+.-|.-.. .+.+++.++.+...++.+.+.--+.... ...+
T Consensus 163 ~~~g---~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~ 239 (253)
T PRK02083 163 EELG---AGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGE 239 (253)
T ss_pred HHcC---CCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHH
Confidence 4555 566677765432110 01255666666654555554443 3677887877655555454432222221 1257
Q ss_pred hHHHHHHhCCee
Q 020083 181 IIPLCRELGIGI 192 (331)
Q Consensus 181 l~~~~~~~gi~v 192 (331)
+.+.|++.||.+
T Consensus 240 ~~~~~~~~~~~~ 251 (253)
T PRK02083 240 LKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHCCCcc
Confidence 888898888764
No 152
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=35.49 E-value=1.7e+02 Score=28.03 Aligned_cols=68 Identities=18% Similarity=0.103 Sum_probs=50.1
Q ss_pred HHHHHHHHHHcCCc---ceeecCCCCHHHHHHHhcCCCceEEecccccccc-chhhhhHHHHHHhCCeeeec
Q 020083 128 TIGEMKKLVEEGKI---KYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPY 195 (331)
Q Consensus 128 ~~~~l~~l~~~G~i---r~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~gi~v~a~ 195 (331)
.++.+.+|+++-.+ -..|=+.++...++.+++..-++++|....-.-- ....++...|+.+|+.++.+
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 46777778776442 2336677888999999988889999998665422 12368999999999998765
No 153
>PTZ00081 enolase; Provisional
Probab=35.20 E-value=3.3e+02 Score=26.53 Aligned_cols=96 Identities=15% Similarity=0.088 Sum_probs=66.1
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--Ccceeec--CCCCHHHHHHHhcCCCceE
Q 020083 90 GTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGL--SEASPDTIRRAHGVHPITA 165 (331)
Q Consensus 90 ~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G--~ir~iGv--S~~~~~~l~~~~~~~~~~~ 165 (331)
.+++++.+-..+.++.++ ++++-.|-+.. .|+.+.+|.++= .+.-+|= +..++..+++.++....++
T Consensus 281 ~s~~eli~~~~~~l~~y~-----I~~IEDPl~~~----D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~ 351 (439)
T PTZ00081 281 LTGEELVELYLDLVKKYP-----IVSIEDPFDQD----DWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNA 351 (439)
T ss_pred cCHHHHHHHHHHHHhcCC-----cEEEEcCCCcc----cHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 578888887777777764 56677775543 355555555542 4433333 2346899999998888889
Q ss_pred Eecccccccc-chhhhhHHHHHHhCCeeee
Q 020083 166 VQMEWSLWTR-DIEEEIIPLCRELGIGIVP 194 (331)
Q Consensus 166 ~q~~~n~~~~-~~~~~l~~~~~~~gi~v~a 194 (331)
+|+..|-.-- ....++...|+++|+.++.
T Consensus 352 i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 352 LLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred EEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 9988775432 1236789999999999876
No 154
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=35.20 E-value=3.8e+02 Score=25.00 Aligned_cols=151 Identities=10% Similarity=0.042 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCC-ChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHH
Q 020083 24 SEEDGISMIKHAFSKGITFFDTADVYGQ-NANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEAS 102 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~-g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 102 (331)
+.++..+.+..+.+.|++.|=.--.... ....+.+ +++++.-.+++.|..-... .++.+...+-++ .
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v-~air~~~g~~~~l~vDaN~----------~~~~~~A~~~~~-~ 208 (355)
T cd03321 141 GAKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVV-RSIRQAVGDGVGLMVDYNQ----------SLTVPEAIERGQ-A 208 (355)
T ss_pred hHHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHH-HHHHHhhCCCCEEEEeCCC----------CcCHHHHHHHHH-H
Confidence 3455566667777888887643211110 0122333 4454432234444333211 335554333332 2
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eeecCCCCHHHHHHHhcCCCceEEecccccccc-chhhh
Q 020083 103 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEE 180 (331)
Q Consensus 103 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~ 180 (331)
|+.+ ++.++..|-... .++.+.+++++--|. ..|=+.++..++..++....++++|+..+..-- ....+
T Consensus 209 l~~~-----~i~~iEeP~~~~----d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ 279 (355)
T cd03321 209 LDQE-----GLTWIEEPTLQH----DYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLR 279 (355)
T ss_pred HHcC-----CCCEEECCCCCc----CHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHH
Confidence 3333 555676665433 356667777664332 345566789999999888888999987765432 12367
Q ss_pred hHHHHHHhCCeeeec
Q 020083 181 IIPLCRELGIGIVPY 195 (331)
Q Consensus 181 l~~~~~~~gi~v~a~ 195 (331)
+.+.|+.+|+.++.+
T Consensus 280 ia~~A~~~gi~~~~h 294 (355)
T cd03321 280 ASALAEQAGIPMSSH 294 (355)
T ss_pred HHHHHHHcCCeeccc
Confidence 899999999998643
No 155
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=34.94 E-value=2.1e+02 Score=22.39 Aligned_cols=62 Identities=8% Similarity=-0.008 Sum_probs=41.8
Q ss_pred CCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHHHHcCCC---cccEEEeccCCCC-CCHHHHHHHHHHHHH
Q 020083 66 PREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVD---YIDLYYQHRVDTS-VPIEETIGEMKKLVE 137 (331)
Q Consensus 66 ~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d---~iDl~~lH~~~~~-~~~~~~~~~l~~l~~ 137 (331)
+|==+.|+-|+|.- ..++.+++-+.++.+.+..+ -.|++++-.+... .+..++.+.|+.+.+
T Consensus 48 ~R~G~~VsKKvG~A----------V~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~ 113 (122)
T PRK03459 48 PRFGLVVSKAVGNA----------VIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLG 113 (122)
T ss_pred CEEEEEEeeeccch----------hHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHH
Confidence 34446777787743 25777777777777776543 4699999887654 466777777776544
No 156
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=34.74 E-value=2.5e+02 Score=25.53 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHcCCCCeEeecCCCCHHHHHHHH
Q 020083 237 FRIENLAKKYKC------TSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNI 281 (331)
Q Consensus 237 ~~l~~ia~~~g~------s~~qlal~~~l~~~~v~~vi~G~~~~~~l~enl 281 (331)
.+|.++|++.+. ++.++-..|+.... .+.+..|+|+|+.+-+.+
T Consensus 225 ~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~-~VGitaGASTP~~li~eV 274 (281)
T PRK12360 225 QKLVKICEKNCPNTFHIETADELDLEMLKDYK-IIGITAGASTPDWIIEEV 274 (281)
T ss_pred HHHHHHHHHHCCCEEEECChHHCCHHHhCCCC-EEEEEccCCCCHHHHHHH
Confidence 378999998874 68899899997654 467889999999887664
No 157
>PRK06361 hypothetical protein; Provisional
Probab=34.72 E-value=2.9e+02 Score=23.48 Aligned_cols=185 Identities=14% Similarity=0.072 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHH---hhcC-CCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHH
Q 020083 27 DGISMIKHAFSKGITFFDTADVYGQNANETLLGKA---FKML-PREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEAS 102 (331)
Q Consensus 27 ~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~---L~~~-~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 102 (331)
...++++.|.+.|+..+=-++|.....-...+-.. .++. ...++.| ..|.... ...++.+ ..+.+.
T Consensus 11 ~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~~~i~v--~~GiE~~-------~~~~~~~-~~~~~~ 80 (212)
T PRK06361 11 IPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELYWDIEV--IPGVELT-------HVPPKLI-PKLAKK 80 (212)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhcCCCEE--EEEEEEc-------ccCchhh-chHHHH
Confidence 36789999999999999777765421111111111 1111 1112322 2232211 0122222 334456
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCC-CHHHHHHHhcCCC-ceEEeccccccccchhhh
Q 020083 103 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGVHP-ITAVQMEWSLWTRDIEEE 180 (331)
Q Consensus 103 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~-~~~~q~~~n~~~~~~~~~ 180 (331)
+.+++ .|+..+|......+.. ...-.++.+.|.+.-+|=-.. ....++.+.+..- +.++ . ....+.....
T Consensus 81 ~~~~~---~~~~svH~~~~~~~~~--~~~~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~~lEin-~--~~~~~~~~~~ 152 (212)
T PRK06361 81 ARDLG---AEIVVVHGETIVEPVE--EGTNLAAIECEDVDILAHPGLITEEEAELAAENGVFLEIT-A--RKGHSLTNGH 152 (212)
T ss_pred HHHCC---CEEEEECCCCcchhhh--hhhHHHHHhCCCCcEecCcchhhHHHHHHHHHcCeEEEEE-C--CCCcccchHH
Confidence 66665 5677899654322211 111145667787655553322 2223333332221 2221 1 1112223467
Q ss_pred hHHHHHHhCCeeeecccCCccccCCCCccCCCCCCcccccCcCCCCcchhhHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 020083 181 IIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWV 258 (331)
Q Consensus 181 l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qlal~~~ 258 (331)
+++++++.|+.++.-|.... +......+.+..++++.|.+..++--.+.
T Consensus 153 ~l~~a~~~gi~vv~~SDaH~-----------------------------~~d~~~~~~~~~i~~~~gl~~~~v~~~~~ 201 (212)
T PRK06361 153 VARIAREAGAPLVINTDTHA-----------------------------PSDLITYEFARKVALGAGLTEKELEEALE 201 (212)
T ss_pred HHHHHHHhCCcEEEECCCCC-----------------------------HHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999876444331 01112357888999999999988765554
No 158
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=34.56 E-value=2.9e+02 Score=23.58 Aligned_cols=132 Identities=13% Similarity=0.062 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc----------cCcCCC--hHHHHHHHHhhcCCCCc--EEEEeeecccCCCCCCcccC
Q 020083 24 SEEDGISMIKHAFSKGITFFDTA----------DVYGQN--ANETLLGKAFKMLPREK--VQIATKFGVVGLRDNGVIVK 89 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA----------~~Yg~g--~sE~~lG~~L~~~~R~~--~~I~tK~~~~~~~~~~~~~~ 89 (331)
+.++..+..+.+.+.|+..+|-- +.||.. ..-+.+-+.++.. |+. +-|+.|+.....
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v-~~~~~~~v~vk~r~~~~-------- 135 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAV-REAVPIPVTVKIRLGWD-------- 135 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHH-HHhcCCCEEEEEeeccC--------
Confidence 67888888899999999999852 345532 1223344444432 111 446666642210
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeccCCCCC--CHHHHHHHHHHHHHcCCcceeecCCC-CHHHHHHHhcCCCceEE
Q 020083 90 GTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV--PIEETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGVHPITAV 166 (331)
Q Consensus 90 ~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~--~~~~~~~~l~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~ 166 (331)
..+...+-+ +.|+..| +|.+.+|...... .....++.+..+++.-.+--++.... +.+++.+++.....+.+
T Consensus 136 -~~~~~~~~~-~~l~~~G---vd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V 210 (231)
T cd02801 136 -DEEETLELA-KALEDAG---ASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGV 210 (231)
T ss_pred -CchHHHHHH-HHHHHhC---CCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEE
Confidence 011222222 2345566 4555667653211 00123455555555544544444443 45555555554445555
Q ss_pred ecc
Q 020083 167 QME 169 (331)
Q Consensus 167 q~~ 169 (331)
++-
T Consensus 211 ~ig 213 (231)
T cd02801 211 MIG 213 (231)
T ss_pred EEc
Confidence 443
No 159
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=34.51 E-value=3.5e+02 Score=25.18 Aligned_cols=104 Identities=21% Similarity=0.254 Sum_probs=56.0
Q ss_pred cCCChHHHHHHHHHHHHHcCCCcccEEE--------ec-cCCCCCCHHHHHHHHHHHHHcCCcceeecCC-CCHHHHHHH
Q 020083 88 VKGTPDYVRSCCEASLKRLDVDYIDLYY--------QH-RVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRA 157 (331)
Q Consensus 88 ~~~s~~~i~~~~~~sL~~L~~d~iDl~~--------lH-~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~-~~~~~l~~~ 157 (331)
+.++.+.+.+-++ .|.+.|+++|.+-. +. .+....+. +.++.+.+..+.-++..+-+.. ...+.++.+
T Consensus 19 ~~f~~~~~~~ia~-~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~-e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a 96 (333)
T TIGR03217 19 HQFTIEQVRAIAA-ALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDL-EYIEAAADVVKRAKVAVLLLPGIGTVHDLKAA 96 (333)
T ss_pred CcCCHHHHHHHHH-HHHHcCCCEEEEecCCCCCCccccCCCCCCChH-HHHHHHHHhCCCCEEEEEeccCccCHHHHHHH
Confidence 4667777665554 58999999999852 11 12222222 3333333333333333222211 246677666
Q ss_pred hcCCCceEEeccccccccchhhhhHHHHHHhCCeeee
Q 020083 158 HGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVP 194 (331)
Q Consensus 158 ~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a 194 (331)
.+. .++.+.+-.+.-.-..-.+.+++++++|+.+..
T Consensus 97 ~~~-gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~ 132 (333)
T TIGR03217 97 YDA-GARTVRVATHCTEADVSEQHIGMARELGMDTVG 132 (333)
T ss_pred HHC-CCCEEEEEeccchHHHHHHHHHHHHHcCCeEEE
Confidence 654 345555444432222336788899999987664
No 160
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=34.48 E-value=42 Score=22.71 Aligned_cols=22 Identities=32% Similarity=0.679 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHH----HHcCCCeEeC
Q 020083 24 SEEDGISMIKHA----FSKGITFFDT 45 (331)
Q Consensus 24 ~~~~~~~~l~~A----~~~Gin~~Dt 45 (331)
++.+|.++|+.| ++.|+.|+|-
T Consensus 15 ~~~tA~~IIrqAK~~lV~~G~~~Y~n 40 (59)
T PF11372_consen 15 SESTARDIIRQAKALLVQKGFSFYNN 40 (59)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcccC
Confidence 457788888877 5679999873
No 161
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=34.36 E-value=2.7e+02 Score=26.08 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=19.6
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEec
Q 020083 89 KGTPDYVRSCCEASLKRLDVDYIDLYYQH 117 (331)
Q Consensus 89 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lH 117 (331)
..+.+.+.+.++..+ .|+.+++.+|.+.
T Consensus 163 gqt~~~~~~~l~~~~-~l~~~~is~y~l~ 190 (360)
T TIGR00539 163 LQTLNSLKEELKLAK-ELPINHLSAYALS 190 (360)
T ss_pred CCCHHHHHHHHHHHH-ccCCCEEEeecce
Confidence 337777777777655 4788888877654
No 162
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=34.28 E-value=1.9e+02 Score=25.73 Aligned_cols=86 Identities=17% Similarity=0.111 Sum_probs=55.7
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCHHHHHHHhcCCCceEEecccccccc-chhhhhHHHHHHhC
Q 020083 111 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEEIIPLCRELG 189 (331)
Q Consensus 111 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~g 189 (331)
.++.++-.|-+ .+.++.+.++. .+.=-..|=|-++...+..++....++++|+.....-- .....+.+.|+.+|
T Consensus 153 ~~i~~iEqP~~----~~d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~g 227 (263)
T cd03320 153 GRIEYIEQPLP----PDDLAELRRLA-AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARG 227 (263)
T ss_pred cCCceEECCCC----hHHHHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcC
Confidence 45556666654 23455666665 33333455556677778888887778888888664321 12368899999999
Q ss_pred CeeeecccCCcc
Q 020083 190 IGIVPYSPLGRG 201 (331)
Q Consensus 190 i~v~a~spl~~G 201 (331)
+.++..+.+..+
T Consensus 228 i~~~~~~~~es~ 239 (263)
T cd03320 228 IPAVVSSALESS 239 (263)
T ss_pred CCEEEEcchhhH
Confidence 999886555433
No 163
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=33.88 E-value=1.5e+02 Score=25.28 Aligned_cols=38 Identities=32% Similarity=0.513 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHcCCCCeEeecCCC--CHHHHHHHHhcc
Q 020083 247 KCTSAQLALAWVLGQGDDVVPIPGTT--KIKNLDDNIDSL 284 (331)
Q Consensus 247 g~s~~qlal~~~l~~~~v~~vi~G~~--~~~~l~enl~a~ 284 (331)
..|=.++||+|++.++.-..+++|+. ..+|.-.|+..+
T Consensus 71 D~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~L 110 (203)
T TIGR01378 71 DTTDLELALKYALERGADEITILGATGGRLDHTLANLNLL 110 (203)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 34678999999998876567777864 788888887754
No 164
>TIGR00035 asp_race aspartate racemase.
Probab=33.83 E-value=2.2e+02 Score=24.73 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEeccCCCC------------CCHHHHHHHHHHHHHcCCcceeecCCCCHHH
Q 020083 91 TPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS------------VPIEETIGEMKKLVEEGKIKYIGLSEASPDT 153 (331)
Q Consensus 91 s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~------------~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~ 153 (331)
+.+..++-++..-.+.+-++++.+.+++|+-. .....+.+.++.|.+.| +..|.++..++..
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~ 88 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHK 88 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHH
Confidence 66777777777777888899999999998531 12234566677777665 7889887776655
No 165
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=33.82 E-value=3.3e+02 Score=26.82 Aligned_cols=103 Identities=10% Similarity=0.067 Sum_probs=58.2
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC-CcceeecCC----C--CHHHHHHHhcCC
Q 020083 89 KGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSE----A--SPDTIRRAHGVH 161 (331)
Q Consensus 89 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvS~----~--~~~~l~~~~~~~ 161 (331)
..+++.|.+.++...++.|+..+ .+...+...+.+.+.+.++++++.| .--.++++. . +.+.++. +...
T Consensus 221 ~rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~-l~~a 296 (497)
T TIGR02026 221 HRDPKKFVDEIEWLVRTHGVGFF---ILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHL-YRRA 296 (497)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEE---EEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHH-HHHh
Confidence 35889999999998888886543 3333333344456677778888887 323344322 1 3333433 3333
Q ss_pred CceEEecccccccc--------c----hhhhhHHHHHHhCCeeeec
Q 020083 162 PITAVQMEWSLWTR--------D----IEEEIIPLCRELGIGIVPY 195 (331)
Q Consensus 162 ~~~~~q~~~n~~~~--------~----~~~~l~~~~~~~gi~v~a~ 195 (331)
.+..+++..--.++ . ...+.++.++++||.+.+.
T Consensus 297 G~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~ 342 (497)
T TIGR02026 297 GLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQ 342 (497)
T ss_pred CCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 33333332222222 1 1146788899999987553
No 166
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.64 E-value=3.1e+02 Score=23.55 Aligned_cols=88 Identities=8% Similarity=0.152 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCC-CHHHHHHHhcCCCceEEecc
Q 020083 91 TPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGVHPITAVQME 169 (331)
Q Consensus 91 s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~ 169 (331)
++++..+-+ +.|-+-|+..+.+=+ -. .+..+.+++++++..=-.||.-+- +.++++.+++..- +++..+
T Consensus 14 ~~~~a~~ia-~al~~gGi~~iEit~---~t-----p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA-~FivSP 83 (201)
T PRK06015 14 DVEHAVPLA-RALAAGGLPAIEITL---RT-----PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS-RFIVSP 83 (201)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEeC---CC-----ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC-CEEECC
Confidence 344444333 344455655444422 11 234455555555433356787664 7888888776532 222222
Q ss_pred ccccccchhhhhHHHHHHhCCeeee
Q 020083 170 WSLWTRDIEEEIIPLCRELGIGIVP 194 (331)
Q Consensus 170 ~n~~~~~~~~~l~~~~~~~gi~v~a 194 (331)
....+++++|+++||.++.
T Consensus 84 ------~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 84 ------GTTQELLAAANDSDVPLLP 102 (201)
T ss_pred ------CCCHHHHHHHHHcCCCEeC
Confidence 2246899999999999985
No 167
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=33.55 E-value=4.4e+02 Score=25.30 Aligned_cols=104 Identities=14% Similarity=0.176 Sum_probs=56.9
Q ss_pred cCcCCChHHHHHHHHhhcC----CCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHHHHcCC-----CcccEEEec
Q 020083 47 DVYGQNANETLLGKAFKML----PREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDV-----DYIDLYYQH 117 (331)
Q Consensus 47 ~~Yg~g~sE~~lG~~L~~~----~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~-----d~iDl~~lH 117 (331)
-.|| .|+.|-+++++. +.+-++|.|-+.... |-..++...++++. ..+.++.+|
T Consensus 61 ~V~G---g~~~L~~~i~~~~~~~~p~~I~v~~tC~~~l--------------iGdDi~~v~~~~~~~~~~~~~~~vi~v~ 123 (428)
T cd01965 61 AVFG---GEDNLIEALKNLLSRYKPDVIGVLTTCLTET--------------IGDDVAGFIKEFRAEGPEPADFPVVYAS 123 (428)
T ss_pred eeEC---cHHHHHHHHHHHHHhcCCCEEEEECCcchhh--------------cCCCHHHHHHHHHhhccCCCCCeEEEee
Confidence 3566 366777777653 344577777764332 12223333333332 136677888
Q ss_pred cCCCCCC----HHHHHHHHHH-H------HHcCCcceeecCCC---CHHHHHHHhcCCCceEEe
Q 020083 118 RVDTSVP----IEETIGEMKK-L------VEEGKIKYIGLSEA---SPDTIRRAHGVHPITAVQ 167 (331)
Q Consensus 118 ~~~~~~~----~~~~~~~l~~-l------~~~G~ir~iGvS~~---~~~~l~~~~~~~~~~~~q 167 (331)
.|..... .+.++++|-+ + ++.++|.-||-++. +.+.++++++...+.++.
T Consensus 124 tpgf~g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~ 187 (428)
T cd01965 124 TPSFKGSHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPII 187 (428)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEE
Confidence 8865532 2334444433 2 23566888876654 356777777766555544
No 168
>PRK05588 histidinol-phosphatase; Provisional
Probab=33.48 E-value=3.4e+02 Score=23.91 Aligned_cols=145 Identities=19% Similarity=0.211 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHcCCCeEeCccCcCCC---------hHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHH
Q 020083 26 EDGISMIKHAFSKGITFFDTADVYGQN---------ANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVR 96 (331)
Q Consensus 26 ~~~~~~l~~A~~~Gin~~DtA~~Yg~g---------~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~ 96 (331)
....+.+++|.+.|+..+ .++|.... .-+..+-. +...+..+|.+---++. .++ -.
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~-i~~~~~~~I~~GiE~~~------------~~~-~~ 80 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNK-YSKYRNNKLLLGIELGM------------EKD-LI 80 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHH-HHHHhcCCcceEEEecc------------cCC-CH
Confidence 447799999999999999 88774210 01122211 11112233433333322 222 24
Q ss_pred HHHHHHHHHcCCCcccEEEeccCCCCC----------CHHH----HHHHHHHHHH-cCCcceeecCCCCHHHHHHHhcCC
Q 020083 97 SCCEASLKRLDVDYIDLYYQHRVDTSV----------PIEE----TIGEMKKLVE-EGKIKYIGLSEASPDTIRRAHGVH 161 (331)
Q Consensus 97 ~~~~~sL~~L~~d~iDl~~lH~~~~~~----------~~~~----~~~~l~~l~~-~G~ir~iGvS~~~~~~l~~~~~~~ 161 (331)
..+++.|++...||+ |.-+|+.+... +.++ -++.+.++.+ .|++.-+|= ++.+++.....
T Consensus 81 ~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlgH----~Dl~~r~~~~~ 155 (255)
T PRK05588 81 EENKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLGH----IDYISRYAKYE 155 (255)
T ss_pred HHHHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCccC----HhHHHHcCccc
Confidence 556778887887887 78899864221 2223 2355666555 355544432 23333321111
Q ss_pred CceEEeccccccccchhhhhHHHHHHhCCeeee
Q 020083 162 PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVP 194 (331)
Q Consensus 162 ~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a 194 (331)
..+. .+..+ ...-.++++.+.++|+.+-.
T Consensus 156 ~~~~---~~~~~-~~~~~~il~~~~~~g~~lEI 184 (255)
T PRK05588 156 DKEI---YYDEF-KEIIDEILKVLIEKEKVLEI 184 (255)
T ss_pred cccc---cHHHH-HHHHHHHHHHHHHcCCEEEE
Confidence 0000 00001 11126788999999988854
No 169
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=33.23 E-value=57 Score=25.14 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcC
Q 020083 24 SEEDGISMIKHAFSKGITFFDTADVYG 50 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg 50 (331)
+.+.+.++...+++.|++.||.+..|.
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 567789999999999999999999986
No 170
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=33.18 E-value=4.2e+02 Score=24.95 Aligned_cols=27 Identities=7% Similarity=0.187 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEeCcc
Q 020083 21 SPVSEEDGISMIKHAFSKGITFFDTAD 47 (331)
Q Consensus 21 ~~~~~~~~~~~l~~A~~~Gin~~DtA~ 47 (331)
...+.++..++++..-+.||..++...
T Consensus 17 ~~~s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 17 VSLTVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 346788899999999999999999764
No 171
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=33.02 E-value=4.4e+02 Score=25.15 Aligned_cols=104 Identities=17% Similarity=0.192 Sum_probs=61.1
Q ss_pred HHHHHHHHHHH-----------HHcCCCcccEEEeccCCCC-----CCHHHHHHHHHHHHHc-CCcceeecC---CCCHH
Q 020083 93 DYVRSCCEASL-----------KRLDVDYIDLYYQHRVDTS-----VPIEETIGEMKKLVEE-GKIKYIGLS---EASPD 152 (331)
Q Consensus 93 ~~i~~~~~~sL-----------~~L~~d~iDl~~lH~~~~~-----~~~~~~~~~l~~l~~~-G~ir~iGvS---~~~~~ 152 (331)
+.+++.+++.. +.++ +|++-||....+ .+.++..+..++..+. +.=--|+=| ..+++
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~e 204 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPL 204 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHH
Confidence 55766666655 5565 788888865322 3445666666665332 222223323 45788
Q ss_pred HHHHHhcCCCc-eEEeccccccccc-hhhhhHHHHHHhCCeeeecccCCccc
Q 020083 153 TIRRAHGVHPI-TAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRGF 202 (331)
Q Consensus 153 ~l~~~~~~~~~-~~~q~~~n~~~~~-~~~~l~~~~~~~gi~v~a~spl~~G~ 202 (331)
.+++.++...= .++-..-| .. ..+.+.+.|+++|..+++++|..-+.
T Consensus 205 VLeaaLe~~~G~kpLL~SAt---~e~Ny~~ia~lAk~yg~~Vvv~s~~Din~ 253 (389)
T TIGR00381 205 VLEKAAEVAEGERCLLASAN---LDLDYEKIANAAKKYGHVVLSWTIMDINM 253 (389)
T ss_pred HHHHHHHHhCCCCcEEEecC---chhhHHHHHHHHHHhCCeEEEEcCCcHHH
Confidence 88887654211 11111111 11 23689999999999999999876554
No 172
>PLN00191 enolase
Probab=32.99 E-value=2.9e+02 Score=27.01 Aligned_cols=96 Identities=10% Similarity=0.120 Sum_probs=66.9
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecC--CCCHHHHHHHhcCCCceEEe
Q 020083 90 GTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS--EASPDTIRRAHGVHPITAVQ 167 (331)
Q Consensus 90 ~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS--~~~~~~l~~~~~~~~~~~~q 167 (331)
.+++++.+-+++.+++ .++.++-.|-+. +.|+.+.+|.++..+.-+|=- ..++..++++++....++++
T Consensus 295 ~s~~e~i~~~~~L~~~-----y~I~~IEDPl~~----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~ 365 (457)
T PLN00191 295 KSGDELIDLYKEFVSD-----YPIVSIEDPFDQ----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALL 365 (457)
T ss_pred cCHHHHHHHHHHHhhc-----CCcEEEECCCCc----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEE
Confidence 4677766666655433 356778777553 446677777777777655521 25688999998888888888
Q ss_pred cccccccc-chhhhhHHHHHHhCCeeee
Q 020083 168 MEWSLWTR-DIEEEIIPLCRELGIGIVP 194 (331)
Q Consensus 168 ~~~n~~~~-~~~~~l~~~~~~~gi~v~a 194 (331)
+..|-.-. ....++.+.|+++|+.++.
T Consensus 366 iKl~qiGGITea~~~a~lA~~~G~~~~i 393 (457)
T PLN00191 366 LKVNQIGTVTESIEAVKMSKAAGWGVMT 393 (457)
T ss_pred ecccccCCHHHHHHHHHHHHHCCCEEEe
Confidence 88775432 1236799999999999976
No 173
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=32.79 E-value=3.6e+02 Score=24.08 Aligned_cols=105 Identities=17% Similarity=0.147 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCC-cEEEEeeecccCCCCCCcccCCChHHHHHHHH
Q 020083 22 PVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPRE-KVQIATKFGVVGLRDNGVIVKGTPDYVRSCCE 100 (331)
Q Consensus 22 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~-~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 100 (331)
..+.++..++++...+.||..++... ...+..+.-.-+.+....+. .++. +. ....+.+..+++
T Consensus 18 ~~s~~~k~~i~~~L~~~Gv~~IEvG~-P~~~~~~~~~~~~l~~~~~~~~v~~---~~-----------r~~~~di~~a~~ 82 (262)
T cd07948 18 FFDTEDKIEIAKALDAFGVDYIELTS-PAASPQSRADCEAIAKLGLKAKILT---HI-----------RCHMDDARIAVE 82 (262)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEC-CCCCHHHHHHHHHHHhCCCCCcEEE---Ee-----------cCCHHHHHHHHH
Confidence 35788999999999999999999864 22222333333344332222 2211 11 124445555443
Q ss_pred HHHHHcCCCcccEEEeccC---------CCCCCHHHHHHHHHHHHHcCCcceeec
Q 020083 101 ASLKRLDVDYIDLYYQHRV---------DTSVPIEETIGEMKKLVEEGKIKYIGL 146 (331)
Q Consensus 101 ~sL~~L~~d~iDl~~lH~~---------~~~~~~~~~~~~l~~l~~~G~ir~iGv 146 (331)
.|++.|.++.=-++ +....++.+.+.++.+++.|.--.+++
T Consensus 83 -----~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 83 -----TGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred -----cCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 37776666552111 111123344555577777886666665
No 174
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=32.63 E-value=70 Score=18.96 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHH
Q 020083 234 NIYFRIENLAKKYKCTSAQLA 254 (331)
Q Consensus 234 ~~~~~l~~ia~~~g~s~~qla 254 (331)
+..+.|.++|++.|.|.+++.
T Consensus 9 ~~~~~l~~~a~~~g~s~s~~i 29 (39)
T PF01402_consen 9 ELYERLDELAKELGRSRSELI 29 (39)
T ss_dssp HHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHH
Confidence 456799999999999988864
No 175
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=32.48 E-value=1.3e+02 Score=28.87 Aligned_cols=119 Identities=14% Similarity=0.202 Sum_probs=65.7
Q ss_pred HHHHHHHHHHcCCcceeecCCCCHHHHHHHhcC---CCceEEeccccccccchhhhhHHHHHHhC--CeeeecccCCccc
Q 020083 128 TIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV---HPITAVQMEWSLWTRDIEEEIIPLCRELG--IGIVPYSPLGRGF 202 (331)
Q Consensus 128 ~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~---~~~~~~q~~~n~~~~~~~~~l~~~~~~~g--i~v~a~spl~~G~ 202 (331)
+.+++.+..++++ ++.+.+++.+...++. ..+|++-++..+ ..+.++.+++.+ +++++. ++.+
T Consensus 123 iYqa~~~~~~k~~----~~~~mt~d~~~~~ie~qa~~GVDfmTiHcGi-----~~~~~~~~~~~~R~~giVSR---GGs~ 190 (431)
T PRK13352 123 IYQAAVEAARKYG----SVVDMTEDDLFDVIEKQAKDGVDFMTIHCGV-----TRETLERLKKSGRIMGIVSR---GGSF 190 (431)
T ss_pred HHHHHHHHHhcCC----ChhhCCHHHHHHHHHHHHHhCCCEEEEccch-----hHHHHHHHHhcCCccCeecC---CHHH
Confidence 5666666655554 7777888877665443 566766665544 456777787654 666653 2222
Q ss_pred cCCCCccCCCCCCcccccCcCCCCcchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeEeecCCCCHHHHHHHH
Q 020083 203 FGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNI 281 (331)
Q Consensus 203 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~enl 281 (331)
+..= .. ....-++..+-++.|-+|+++|.+|.+ |..+.-...+.=++...|+.|.+
T Consensus 191 ~~~W-M~---------------~n~~ENPlye~fD~lLeI~~~yDVtlS-------LGDglRPG~i~Da~D~aQi~El~ 246 (431)
T PRK13352 191 LAAW-ML---------------HNNKENPLYEHFDYLLEILKEYDVTLS-------LGDGLRPGCIADATDRAQIQELI 246 (431)
T ss_pred HHHH-HH---------------HcCCcCchHHHHHHHHHHHHHhCeeee-------ccCCcCCCccccCCcHHHHHHHH
Confidence 2210 00 001113456667899999999987532 12211122344455666666554
No 176
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=32.47 E-value=3.7e+02 Score=24.11 Aligned_cols=124 Identities=14% Similarity=0.074 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCccCc------C-CCh-HHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChH
Q 020083 22 PVSEEDGISMIKHAFSKGITFFDTADVY------G-QNA-NETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPD 93 (331)
Q Consensus 22 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Y------g-~g~-sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~ 93 (331)
..+.++..++.....+.||..+|....- + .+. .++.+...-+..++.++...+...... ....-|.
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~------~~~~~p~ 90 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLV------GYRHYPD 90 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhccccccc------CccCCCc
Confidence 3577888889888889999999987421 0 122 334443333322333333322211000 0011222
Q ss_pred H-HHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeec-----CCCCHHHHHHH
Q 020083 94 Y-VRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL-----SEASPDTIRRA 157 (331)
Q Consensus 94 ~-i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGv-----S~~~~~~l~~~ 157 (331)
. .+..++.+. ..|++.|-+ ..+..+++.+.+.++..++.|+.-.+++ +.++++.+.+.
T Consensus 91 ~~~~~di~~~~-~~g~~~iri-----~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~ 154 (275)
T cd07937 91 DVVELFVEKAA-KNGIDIFRI-----FDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKL 154 (275)
T ss_pred HHHHHHHHHHH-HcCCCEEEE-----eecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHH
Confidence 2 333333333 335444333 3344457788888899999996544444 34555555443
No 177
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=32.46 E-value=3.3e+02 Score=25.92 Aligned_cols=90 Identities=12% Similarity=0.122 Sum_probs=58.2
Q ss_pred cEEEeccCCCC-----------CCHHHHHHHHHHHH-HcCC---cceeecC--CCCHHH---HHHHhcCC---CceEEec
Q 020083 112 DLYYQHRVDTS-----------VPIEETIGEMKKLV-EEGK---IKYIGLS--EASPDT---IRRAHGVH---PITAVQM 168 (331)
Q Consensus 112 Dl~~lH~~~~~-----------~~~~~~~~~l~~l~-~~G~---ir~iGvS--~~~~~~---l~~~~~~~---~~~~~q~ 168 (331)
=.+-||.+++. -+++++++++.++. +.|+ |+|+=+. |.+.++ +.++++.. +..++-+
T Consensus 240 LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLI 319 (373)
T PRK14459 240 LAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLI 319 (373)
T ss_pred EEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEE
Confidence 45678999753 24788999988776 4454 4444333 334443 45555544 5678899
Q ss_pred cccccccc----hh----hhhHHHHHHhCCeeeecccCCcc
Q 020083 169 EWSLWTRD----IE----EEIIPLCRELGIGIVPYSPLGRG 201 (331)
Q Consensus 169 ~~n~~~~~----~~----~~l~~~~~~~gi~v~a~spl~~G 201 (331)
+||++... +. ....+..+++||.+......+.-
T Consensus 320 pyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~d 360 (373)
T PRK14459 320 PLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQE 360 (373)
T ss_pred ccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCcC
Confidence 99996531 11 45677778999999987776543
No 178
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=32.33 E-value=1.1e+02 Score=27.92 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHcCCCCeEeecCCCCHHHHHHHH
Q 020083 237 FRIENLAKKYKC------TSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNI 281 (331)
Q Consensus 237 ~~l~~ia~~~g~------s~~qlal~~~l~~~~v~~vi~G~~~~~~l~enl 281 (331)
.+|.++|++++. ++.++-..|+-... .+.+..|+|+|+.+-+.+
T Consensus 225 ~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~-~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 225 RKLAEIAKEHGKPTYHIETADELDPEWLKGVK-KVGITAGASTPDWIIEEV 274 (281)
T ss_dssp HHHHHHHHHCTTCEEEESSGGG--HHHHTT-S-EEEEEE-TTS-HHHHHHH
T ss_pred HHHHHHHHHhCCCEEEeCCccccCHhHhCCCC-EEEEEccCCCCHHHHHHH
Confidence 489999999885 78999999997665 578899999999988765
No 179
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=32.08 E-value=2.3e+02 Score=22.01 Aligned_cols=63 Identities=17% Similarity=0.176 Sum_probs=41.6
Q ss_pred CCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHHHHcCC---CcccEEEeccCCCC-CCHHHHHHHHHHHHHc
Q 020083 67 REKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDV---DYIDLYYQHRVDTS-VPIEETIGEMKKLVEE 138 (331)
Q Consensus 67 R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~---d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~~ 138 (331)
|=-+.|+-|++.. -..++.|++.+.+.++.+.. ...|++++-.+... .+..++.+.|..|.++
T Consensus 48 R~G~~VsKK~~~~---------AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 48 RFGISISQKVSKK---------AVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred EEEEEEecccccc---------hhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 3335666665532 23677788888888776642 35799999888654 4667777777776544
No 180
>PRK00077 eno enolase; Provisional
Probab=32.03 E-value=3.8e+02 Score=25.91 Aligned_cols=96 Identities=10% Similarity=0.057 Sum_probs=63.3
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--CcceeecC--CCCHHHHHHHhcCCCceE
Q 020083 90 GTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLS--EASPDTIRRAHGVHPITA 165 (331)
Q Consensus 90 ~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvS--~~~~~~l~~~~~~~~~~~ 165 (331)
++++...+.+.+.++.+ +++++-.|-+..+ ++.+.+|.++- .+.-.|=- ..++..++.+++....++
T Consensus 261 ~s~~e~~~~~~~l~e~y-----~i~~iEdPl~~~D----~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~ 331 (425)
T PRK00077 261 LTSEEMIDYLAELVDKY-----PIVSIEDGLDEND----WEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANS 331 (425)
T ss_pred CCHHHHHHHHHHHHhhC-----CcEEEEcCCCCcc----HHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCE
Confidence 46666666666665553 5777887765443 55555565553 34333322 236899999988888889
Q ss_pred Eecccccccc-chhhhhHHHHHHhCCeeee
Q 020083 166 VQMEWSLWTR-DIEEEIIPLCRELGIGIVP 194 (331)
Q Consensus 166 ~q~~~n~~~~-~~~~~l~~~~~~~gi~v~a 194 (331)
+|+..+-.-- ....++...|+.+|+.++.
T Consensus 332 v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 332 ILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred EEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 9888775432 1236789999999998765
No 181
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=31.84 E-value=2.6e+02 Score=25.74 Aligned_cols=107 Identities=14% Similarity=0.192 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHHHH
Q 020083 26 EDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKR 105 (331)
Q Consensus 26 ~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~ 105 (331)
+.-+++|+..-+.|+ .+|+|.. |++..-++++-. +.-+|+|....+.-.. ...+.+-+.+++ +. ++
T Consensus 154 ~~G~~vv~~mn~lGm-iiDvSH~-----s~~~~~dv~~~s--~~PviaSHsn~ral~~--h~RNltD~~i~~-ia---~~ 219 (309)
T cd01301 154 PFGKELVREMNRLGI-IIDLSHL-----SERTFWDVLDIS--NAPVIASHSNARALCD--HPRNLTDAQLKA-IA---ET 219 (309)
T ss_pred HHHHHHHHHHHHcCC-EEEcCCC-----CHHHHHHHHHhc--CCCEEEeccChHHhcC--CCCCCCHHHHHH-HH---Hc
Confidence 457899999999999 9999975 788888888752 3347777765543211 012334443332 22 22
Q ss_pred cCCCcccEEEeccC---CCCCCHHHHHHHHHHHHHcCCcceeecCC
Q 020083 106 LDVDYIDLYYQHRV---DTSVPIEETIGEMKKLVEEGKIKYIGLSE 148 (331)
Q Consensus 106 L~~d~iDl~~lH~~---~~~~~~~~~~~~l~~l~~~G~ir~iGvS~ 148 (331)
=| .|-+.+.-.. +....+++.++.++.+.+.+=+.++|+..
T Consensus 220 GG--vigi~~~~~fl~~~~~~~~~~~~~hi~~i~~l~G~dhVgiGs 263 (309)
T cd01301 220 GG--VIGVNFYPAFLSPGADATLDDVVRHIDYIVDLIGIDHVGLGS 263 (309)
T ss_pred CC--EEEEeeeHHHhCCCCCCCHHHHHHHHHHHHHhcCCCeEEECc
Confidence 22 2333222111 23456888999999988877789999965
No 182
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=31.83 E-value=2.7e+02 Score=24.42 Aligned_cols=75 Identities=19% Similarity=0.211 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCC-ChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHH
Q 020083 24 SEEDGISMIKHAFSKGITFFDTADVYGQ-NANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEAS 102 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~-g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 102 (331)
+.++-....+.+.+.|..|+-|+..+.. |-+.+-+ +.+++.-.. ++|....++ =.+.+....-++.-
T Consensus 138 t~ee~~~A~~i~~~aGAdFVKTSTGf~~~gAT~edv-~lM~~~vg~------~vgvKaSGG-----Irt~eda~~~i~ag 205 (228)
T COG0274 138 TDEEKRKACEIAIEAGADFVKTSTGFSAGGATVEDV-KLMKETVGG------RVGVKASGG-----IRTAEDAKAMIEAG 205 (228)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHH-HHHHHHhcc------CceeeccCC-----cCCHHHHHHHHHHh
Confidence 5677799999999999999999996654 3333333 223221111 122222211 12788899999999
Q ss_pred HHHcCCCc
Q 020083 103 LKRLDVDY 110 (331)
Q Consensus 103 L~~L~~d~ 110 (331)
.-|+|+..
T Consensus 206 a~RiGtSs 213 (228)
T COG0274 206 ATRIGTSS 213 (228)
T ss_pred HHHhcccc
Confidence 99999753
No 183
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=31.63 E-value=4.3e+02 Score=24.59 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEeCc
Q 020083 21 SPVSEEDGISMIKHAFSKGITFFDTA 46 (331)
Q Consensus 21 ~~~~~~~~~~~l~~A~~~Gin~~DtA 46 (331)
...+.++..++++..-+.||..++.+
T Consensus 19 ~~f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 19 HQFTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 44678999999999999999999985
No 184
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.58 E-value=2.2e+02 Score=26.73 Aligned_cols=103 Identities=12% Similarity=0.035 Sum_probs=61.4
Q ss_pred CCCcEEEEeeecccCCCC------CCcccCCChHHHHHHHHHHHHHcCCCcccEEEecc-CCCCCCHHHHHHHHHHHHHc
Q 020083 66 PREKVQIATKFGVVGLRD------NGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHR-VDTSVPIEETIGEMKKLVEE 138 (331)
Q Consensus 66 ~R~~~~I~tK~~~~~~~~------~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~-~~~~~~~~~~~~~l~~l~~~ 138 (331)
.|..+.|||-+|....-. .+....+++++|..++...-+. +.++-+.+-. =.|...+++++++++.+.+.
T Consensus 101 ~r~t~cvSsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~---~~i~nIvfmGmGEPL~N~d~vi~al~~l~~~ 177 (345)
T PRK14466 101 DRATLCVSSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPER---DKLTNLVFMGMGEPLDNLDEVLKALEILTAP 177 (345)
T ss_pred CceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhc---CCCCeEEEeeeCcCcccHHHHHHHHHHHhhc
Confidence 366677888887654311 1234468999999998866322 2344444433 34445568899999998876
Q ss_pred CCc----ceeecCCCCHH-HHHHHhcCCCceEEeccccc
Q 020083 139 GKI----KYIGLSEASPD-TIRRAHGVHPITAVQMEWSL 172 (331)
Q Consensus 139 G~i----r~iGvS~~~~~-~l~~~~~~~~~~~~q~~~n~ 172 (331)
.-. |.|-||+-... .+.++....++ .+.+.++.
T Consensus 178 ~g~~~s~r~ItVsT~G~~~~i~~l~~~~~~-~LavSLha 215 (345)
T PRK14466 178 YGYGWSPKRITVSTVGLKKGLKRFLEESEC-HLAISLHS 215 (345)
T ss_pred cccCcCCceEEEEcCCCchHHHHHhhccCc-EEEEEcCC
Confidence 444 67777776543 35565443332 33444443
No 185
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=31.41 E-value=2.5e+02 Score=21.78 Aligned_cols=63 Identities=11% Similarity=0.188 Sum_probs=39.2
Q ss_pred CCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHHHHcCC--CcccEEEeccCCCC-CCHHHHHHHHHHHHH
Q 020083 66 PREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDV--DYIDLYYQHRVDTS-VPIEETIGEMKKLVE 137 (331)
Q Consensus 66 ~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~--d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~ 137 (331)
+|=-+.|+-|++.. -..++.|++.+.++++.... ...|++++..+... .+..++.+.|..|.+
T Consensus 44 ~R~G~~VsKK~~~~---------AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~ 109 (120)
T PRK04390 44 PRLGLVVGKKTAKR---------AVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMA 109 (120)
T ss_pred ceEEEEEecccCcc---------hhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHH
Confidence 34346666775432 23577788888877765432 34699999988644 355666666666544
No 186
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.27 E-value=4.5e+02 Score=24.66 Aligned_cols=106 Identities=13% Similarity=0.219 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHcC-CCcccEEEeccCCCC-----------CCHHHHHHHHHH-HHHcCC---cceeecC--CCCHHHHH-
Q 020083 95 VRSCCEASLKRLD-VDYIDLYYQHRVDTS-----------VPIEETIGEMKK-LVEEGK---IKYIGLS--EASPDTIR- 155 (331)
Q Consensus 95 i~~~~~~sL~~L~-~d~iDl~~lH~~~~~-----------~~~~~~~~~l~~-l~~~G~---ir~iGvS--~~~~~~l~- 155 (331)
+++-.+.-+++|+ .+....+-||.+++. -+++++++++.+ +.+.|+ ++++=+. |.+.++++
T Consensus 196 i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~ 275 (345)
T PRK14457 196 IPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEE 275 (345)
T ss_pred HHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHH
Confidence 4443343334443 244578899999753 236778877766 455553 4555443 34555544
Q ss_pred --HHhcCCCceEEeccccccccc----hh----hhhHHHHHHhCCeeeecccCCc
Q 020083 156 --RAHGVHPITAVQMEWSLWTRD----IE----EEIIPLCRELGIGIVPYSPLGR 200 (331)
Q Consensus 156 --~~~~~~~~~~~q~~~n~~~~~----~~----~~l~~~~~~~gi~v~a~spl~~ 200 (331)
++++..+..++-++||.+... +. ....+..+++|+.+......+.
T Consensus 276 La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 276 LANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGL 330 (345)
T ss_pred HHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 444444567888999987431 11 3456667788999987766654
No 187
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.12 E-value=3.8e+02 Score=25.10 Aligned_cols=92 Identities=12% Similarity=0.116 Sum_probs=57.5
Q ss_pred CCCcEEEEeeecccCCC------CCCcccCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHH-c
Q 020083 66 PREKVQIATKFGVVGLR------DNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVE-E 138 (331)
Q Consensus 66 ~R~~~~I~tK~~~~~~~------~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~-~ 138 (331)
.|..+.|+|-.|....- ........+.++|..++....+..+++.| .++-.=.+...+++++++++.+.+ .
T Consensus 101 ~~~t~cvSsq~GC~~~C~FC~tg~~~~~r~lt~~EI~~qv~~~~~~~~i~~I--vfmG~GEPl~n~~~vi~~l~~l~~~~ 178 (349)
T PRK14463 101 DRNTLCISSQVGCAMGCAFCLTGTFRLTRNLTTAEIVNQVCAVKRDVPVRNI--VFMGMGEPLANLDNVIPALQILTDPD 178 (349)
T ss_pred CCcEEEEEecCCcCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCccEE--EEecCCcchhcHHHHHHHHHHhhccc
Confidence 36667777776654321 11224568999999999887766554433 444334455567889999999875 5
Q ss_pred CC---cceeecCCCC-HHHHHHHhc
Q 020083 139 GK---IKYIGLSEAS-PDTIRRAHG 159 (331)
Q Consensus 139 G~---ir~iGvS~~~-~~~l~~~~~ 159 (331)
|. .+.+-||+-. ...+.++..
T Consensus 179 gl~~s~r~itVsTnGl~~~i~~l~~ 203 (349)
T PRK14463 179 GLQFSTRKVTVSTSGLVPEMEELGR 203 (349)
T ss_pred ccCcCCceEEEECCCchHHHHHHhh
Confidence 65 4677776543 445555544
No 188
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=31.06 E-value=4.1e+02 Score=24.23 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=53.2
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCC-CHHHHHHHhcCCCceEEecc
Q 020083 91 TPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGVHPITAVQME 169 (331)
Q Consensus 91 s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~ 169 (331)
+++.+++.++..++ .+-+.+--+-++......+.+.....++..++.|+--.+=++.. +...+...+.....+.+---
T Consensus 138 ~~~~~~~~~~~~~~-~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~~ri~Hg 216 (324)
T TIGR01430 138 QPEAAEETLELAKP-YKEQTIVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGATRIGHG 216 (324)
T ss_pred CHHHHHHHHHHHHh-hccCcEEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCchhcchh
Confidence 56777777776664 33222222223433333345666677777888887666655543 23344333322222211111
Q ss_pred ccccccchhhhhHHHHHHhCCeeeecccCC
Q 020083 170 WSLWTRDIEEEIIPLCRELGIGIVPYSPLG 199 (331)
Q Consensus 170 ~n~~~~~~~~~l~~~~~~~gi~v~a~spl~ 199 (331)
++ +.. ..+.++..+++|+.+.. .|..
T Consensus 217 ~~-l~~--~~~~i~~l~~~gi~v~~-cP~S 242 (324)
T TIGR01430 217 VR-ALE--DPELLKRLAQENITLEV-CPTS 242 (324)
T ss_pred hh-hcc--CHHHHHHHHHcCceEEE-CCcc
Confidence 11 111 24688999999998754 3444
No 189
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=30.87 E-value=2.4e+02 Score=21.52 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=41.3
Q ss_pred CCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHHHHcCC---CcccEEEeccCCCC-CCHHHHHHHHHHHHHc
Q 020083 66 PREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDV---DYIDLYYQHRVDTS-VPIEETIGEMKKLVEE 138 (331)
Q Consensus 66 ~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~---d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~~ 138 (331)
.|=-+.|+-|+|.- ..++.|++.+.+.++.... ...|++++-.+... .+..++.+.|..|.++
T Consensus 38 ~R~GisVsKKvgkA----------V~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 38 FRVGISVSKKVGNA----------VVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred cEEEEEEecccCch----------hhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 34346677776542 2577788888877776532 35799999888654 4667777777766544
No 190
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=30.72 E-value=2.4e+02 Score=23.91 Aligned_cols=70 Identities=21% Similarity=0.307 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCC-Ch---HHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHH
Q 020083 24 SEEDGISMIKHAFSKGITFFDTADVYGQ-NA---NETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCC 99 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~-g~---sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~ 99 (331)
+.++...+.+.|.++|..|+=|+..|.. |- .-+.+.+.++ .. +-.|.... .+ +.+++.+-+
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~----~~--v~ik~aGG--------ik-t~~~~l~~~ 193 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG----GR--VGVKAAGG--------IR-TLEDALAMI 193 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC----CC--ceEEEeCC--------CC-CHHHHHHHH
Confidence 5678899999999999999999988862 21 2255555554 11 23343211 01 677777777
Q ss_pred HHHHHHcCC
Q 020083 100 EASLKRLDV 108 (331)
Q Consensus 100 ~~sL~~L~~ 108 (331)
+.-..|+|+
T Consensus 194 ~~g~~riG~ 202 (203)
T cd00959 194 EAGATRIGT 202 (203)
T ss_pred HhChhhccC
Confidence 777777775
No 191
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=30.61 E-value=8.1e+02 Score=27.46 Aligned_cols=118 Identities=16% Similarity=0.125 Sum_probs=68.6
Q ss_pred HcCCCcccEEEeccCCC-CCCHHHHHHHHHHHHHcC-Cc--ceeecCCCCHHHHHHHhcCCCceEEeccccccccc-hhh
Q 020083 105 RLDVDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEG-KI--KYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEE 179 (331)
Q Consensus 105 ~L~~d~iDl~~lH~~~~-~~~~~~~~~~l~~l~~~G-~i--r~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~ 179 (331)
.-|.+.||+- ++. ..+-++.+..+..+++.- .+ --|-|-++.++.++.+++..+=..+-...|..... ...
T Consensus 395 e~GA~iIDVn----~g~~~id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEaaLk~~~G~~IINSIs~~~~~~~~~ 470 (1229)
T PRK09490 395 ENGAQIIDIN----MDEGMLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCIQGKGIVNSISLKEGEEKFI 470 (1229)
T ss_pred HCCCCEEEEC----CCCCCCCHHHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHHHHhhcCCCCEEEeCCCCCCCccHH
Confidence 4578999995 332 223345554444444421 11 22566678889999988763222233344444321 124
Q ss_pred hhHHHHHHhCCeeeecccCCccccCCCCccCCCCCCcccccCcCCCCcchhhHHHHHHHHHHHHHH-cCCC
Q 020083 180 EIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKK-YKCT 249 (331)
Q Consensus 180 ~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~-~g~s 249 (331)
++++.|+++|.+++++..=..|. +...++-.+.++++-+++.+ +|++
T Consensus 471 ~~~~l~~kyga~vV~m~~de~G~-----------------------~~t~e~r~~ia~r~~~~~~~~~Gi~ 518 (1229)
T PRK09490 471 EHARLVRRYGAAVVVMAFDEQGQ-----------------------ADTRERKIEICKRAYDILTEEVGFP 518 (1229)
T ss_pred HHHHHHHHhCCCEEEEecCCCCC-----------------------CCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 78999999999999874322332 22345566777777777654 7764
No 192
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=30.46 E-value=2.6e+02 Score=21.68 Aligned_cols=60 Identities=8% Similarity=0.069 Sum_probs=40.8
Q ss_pred CCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHHHHcCCC------cccEEEeccCCCC-CCHHHHHHHHHHH
Q 020083 67 REKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVD------YIDLYYQHRVDTS-VPIEETIGEMKKL 135 (331)
Q Consensus 67 R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d------~iDl~~lH~~~~~-~~~~~~~~~l~~l 135 (331)
|=-+.|+.|++.. -..++.+++.+.++.+....+ ..|++++-.+... .+..++.+.|+.|
T Consensus 47 RlG~sVSKKv~~k---------AV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~~~~~~l~~~l~~l 113 (118)
T PRK01492 47 FLGIKVSRKLNKK---------AVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEEINFSHLNYELSKI 113 (118)
T ss_pred eEEEEEecccCCc---------hhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcccCCHHHHHHHHHHH
Confidence 4446777785532 235788888888888887542 5799999888654 3556666666654
No 193
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=30.31 E-value=4e+02 Score=23.82 Aligned_cols=130 Identities=13% Similarity=0.109 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC---ccCcCCC----hHHHHHHHHhhcCCC-CcEEEEeeecccCCCCCCcccCCChHHH
Q 020083 24 SEEDGISMIKHAFSKGITFFDT---ADVYGQN----ANETLLGKAFKMLPR-EKVQIATKFGVVGLRDNGVIVKGTPDYV 95 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~Dt---A~~Yg~g----~sE~~lG~~L~~~~R-~~~~I~tK~~~~~~~~~~~~~~~s~~~i 95 (331)
+.++..+..+.+.+.|+..|+. +++...+ ...+.+.+.++...+ -++-|+.|++.. .+.+++
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~----------~~~~~~ 178 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY----------FDLEDI 178 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC----------CCHHHH
Confidence 5678888899999999999984 3322221 234555555554211 145688888643 244455
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCCCC-------------C---C------HHHHHHHHHHHHHcC--CcceeecCCC-C
Q 020083 96 RSCCEASLKRLDVDYIDLYYQHRVDTS-------------V---P------IEETIGEMKKLVEEG--KIKYIGLSEA-S 150 (331)
Q Consensus 96 ~~~~~~sL~~L~~d~iDl~~lH~~~~~-------------~---~------~~~~~~~l~~l~~~G--~ir~iGvS~~-~ 150 (331)
.+.++ .++..|. |.+.+|+-... . . ..-.++.+.++++.= .+--||.... +
T Consensus 179 ~~~a~-~l~~~Ga---d~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~ 254 (289)
T cd02810 179 VELAK-AAERAGA---DGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDS 254 (289)
T ss_pred HHHHH-HHHHcCC---CEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 54444 4566775 44455532110 0 0 011355555665543 4556666554 4
Q ss_pred HHHHHHHhcCCCceEEec
Q 020083 151 PDTIRRAHGVHPITAVQM 168 (331)
Q Consensus 151 ~~~l~~~~~~~~~~~~q~ 168 (331)
.+++.+++... .+.+|+
T Consensus 255 ~~da~~~l~~G-Ad~V~v 271 (289)
T cd02810 255 GEDVLEMLMAG-ASAVQV 271 (289)
T ss_pred HHHHHHHHHcC-ccHheE
Confidence 56666655432 454544
No 194
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=30.20 E-value=3.5e+02 Score=24.20 Aligned_cols=99 Identities=19% Similarity=0.219 Sum_probs=55.4
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCC-cceeecCCCCHHHHHHHhcCCCceEEe
Q 020083 89 KGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHGVHPITAVQ 167 (331)
Q Consensus 89 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q 167 (331)
.++.+...+-++. |.++|++.|.+-. |... ++.++..+.+.+.++ .+-.+......+.++.+.+. .++.+-
T Consensus 18 ~~s~~~k~~i~~~-L~~~Gv~~IEvG~---P~~~---~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~-g~~~i~ 89 (262)
T cd07948 18 FFDTEDKIEIAKA-LDAFGVDYIELTS---PAAS---PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVET-GVDGVD 89 (262)
T ss_pred CCCHHHHHHHHHH-HHHcCCCEEEEEC---CCCC---HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHc-CcCEEE
Confidence 5677766665555 9999988888763 5332 334445555544443 33344555667777777664 223332
Q ss_pred ccccc--------cccchh------hhhHHHHHHhCCeeeec
Q 020083 168 MEWSL--------WTRDIE------EEIIPLCRELGIGIVPY 195 (331)
Q Consensus 168 ~~~n~--------~~~~~~------~~l~~~~~~~gi~v~a~ 195 (331)
+-++. +.+..+ .+.++.++++|+.+...
T Consensus 90 i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 90 LVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 22111 111111 46778888999876543
No 195
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=30.14 E-value=4.7e+02 Score=24.57 Aligned_cols=99 Identities=8% Similarity=-0.001 Sum_probs=56.0
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeccCCCC---CCHHHHHHHHHHHHHcCCcceeecCCCCHHHHHHHhcCCCceE
Q 020083 89 KGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS---VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITA 165 (331)
Q Consensus 89 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~---~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~ 165 (331)
.++.+.-. .+-+.|.++|+++|++-..-.|..- .+.+++++.+.. ...++..++. .....++.+++.. ++.
T Consensus 64 ~~s~e~Ki-~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~---~~~~~~~~l~-~n~~die~A~~~g-~~~ 137 (347)
T PLN02746 64 IVPTSVKV-ELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRN---LEGARFPVLT-PNLKGFEAAIAAG-AKE 137 (347)
T ss_pred CCCHHHHH-HHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHh---ccCCceeEEc-CCHHHHHHHHHcC-cCE
Confidence 44555444 4555699999999999765554311 233455555543 2235555554 4677787777652 222
Q ss_pred Eecc---------ccccccchh------hhhHHHHHHhCCeeee
Q 020083 166 VQME---------WSLWTRDIE------EEIIPLCRELGIGIVP 194 (331)
Q Consensus 166 ~q~~---------~n~~~~~~~------~~l~~~~~~~gi~v~a 194 (331)
+.+- .|+ +...+ .+++++++++|+.+.+
T Consensus 138 v~i~~s~Sd~h~~~n~-~~t~~e~l~~~~~~v~~Ak~~Gl~v~~ 180 (347)
T PLN02746 138 VAVFASASESFSKSNI-NCSIEESLVRYREVALAAKKHSIPVRG 180 (347)
T ss_pred EEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 2222 121 11111 4789999999998853
No 196
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=30.07 E-value=4.7e+02 Score=24.52 Aligned_cols=150 Identities=10% Similarity=0.009 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCC---hHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHH
Q 020083 24 SEEDGISMIKHAFSKGITFFDTADVYGQN---ANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCE 100 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g---~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 100 (331)
+.++..+.++.+.+.|++.|=.- .++.. +..+.+ +++++.--+++.|.-=. . ..++.+...+-+
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~~~di~~i-~~vR~~~G~~~~l~vDa--n--------~~~~~~~A~~~~- 209 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVVRRDLKAC-LAVREAVGPDMRLMHDG--A--------HWYSRADALRLG- 209 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhHHHHHHHH-HHHHHHhCCCCeEEEEC--C--------CCcCHHHHHHHH-
Confidence 56777788888999999998652 22211 111222 33433211233232111 1 023444433222
Q ss_pred HHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeec--CCCC-HHHHHHHhcCCCceEEecccccccc-c
Q 020083 101 ASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL--SEAS-PDTIRRAHGVHPITAVQMEWSLWTR-D 176 (331)
Q Consensus 101 ~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGv--S~~~-~~~l~~~~~~~~~~~~q~~~n~~~~-~ 176 (331)
+.|+.+ ++.++-.|-+. +.++.+.+|+++-.+. |.. +-++ ..+++.+++...++++|+..+..-- .
T Consensus 210 ~~l~~~-----~l~~iEeP~~~----~d~~~~~~l~~~~~ip-Ia~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit 279 (368)
T cd03329 210 RALEEL-----GFFWYEDPLRE----ASISSYRWLAEKLDIP-ILGTEHSRGALESRADWVLAGATDFLRADVNLVGGIT 279 (368)
T ss_pred HHhhhc-----CCCeEeCCCCc----hhHHHHHHHHhcCCCC-EEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHH
Confidence 223333 45556555432 2346677888775444 333 4456 8888888888888999998776422 1
Q ss_pred hhhhhHHHHHHhCCeeeecc
Q 020083 177 IEEEIIPLCRELGIGIVPYS 196 (331)
Q Consensus 177 ~~~~l~~~~~~~gi~v~a~s 196 (331)
...++...|+++|+.++.++
T Consensus 280 ~~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 280 GAMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred HHHHHHHHHHHcCCEEEEEC
Confidence 23689999999999998653
No 197
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=29.97 E-value=2.5e+02 Score=24.93 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=32.1
Q ss_pred hhhHHHHHHhCCeeeecccCCccccCCCCccCCCCCCcccccCcCCCCcchhhHHHHHHHHHHHHHHcCC
Q 020083 179 EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKC 248 (331)
Q Consensus 179 ~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~ 248 (331)
+..++.|+..|..++.... .....+. -.....+...+.+.++.++|+++|+
T Consensus 97 ~~~i~~a~~lG~~~v~~~~--~~~~~~~-----------------~~~~~~~~~~~~l~~l~~~A~~~Gv 147 (279)
T TIGR00542 97 EKAIQLARDLGIRTIQLAG--YDVYYEE-----------------HDEETRRRFREGLKEAVELAARAQV 147 (279)
T ss_pred HHHHHHHHHhCCCEEEecC--cccccCc-----------------CCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6789999999999887532 1100000 0112244566777888999999887
No 198
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=29.70 E-value=3.8e+02 Score=23.39 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcc
Q 020083 23 VSEEDGISMIKHAFSKGITFFDTAD 47 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gin~~DtA~ 47 (331)
.+.++..++++...+.||..++...
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~ 40 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGS 40 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecc
Confidence 5788999999999999999999763
No 199
>PLN02389 biotin synthase
Probab=29.66 E-value=5e+02 Score=24.70 Aligned_cols=101 Identities=16% Similarity=0.197 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCc-CC-Ch--HHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHH
Q 020083 23 VSEEDGISMIKHAFSKGITFFDTADVY-GQ-NA--NETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSC 98 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gin~~DtA~~Y-g~-g~--sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ 98 (331)
.+.++..+.++.+.+.|++.|--...+ +. +. .-+.+-+.++..+...+.|....|.. +.+.+
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~l-----------~~E~l--- 181 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGML-----------EKEQA--- 181 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCCC-----------CHHHH---
Confidence 588899999999999999987432111 11 10 12344455554322234455444422 23222
Q ss_pred HHHHHHHcCCCcccEEEecc-C------CCCCCHHHHHHHHHHHHHcCC
Q 020083 99 CEASLKRLDVDYIDLYYQHR-V------DTSVPIEETIGEMKKLVEEGK 140 (331)
Q Consensus 99 ~~~sL~~L~~d~iDl~~lH~-~------~~~~~~~~~~~~l~~l~~~G~ 140 (331)
+-|+.-|+|++-+- +.. + -....+++.++.++.+++.|.
T Consensus 182 --~~LkeAGld~~~~~-LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 182 --AQLKEAGLTAYNHN-LDTSREYYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred --HHHHHcCCCEEEee-ecCChHHhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 33445576654331 111 1 112357888999999999985
No 200
>PRK01903 rnpA ribonuclease P; Reviewed
Probab=29.63 E-value=2.6e+02 Score=22.23 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=29.5
Q ss_pred ChHHHHHHHHHHHHH----cCCC----------cccEEEeccC--CCCCCHHHHHHHHHHHHH
Q 020083 91 TPDYVRSCCEASLKR----LDVD----------YIDLYYQHRV--DTSVPIEETIGEMKKLVE 137 (331)
Q Consensus 91 s~~~i~~~~~~sL~~----L~~d----------~iDl~~lH~~--~~~~~~~~~~~~l~~l~~ 137 (331)
.++.|++.+.++.+. |... ++|++++..+ ....+.+++-+.|..|.+
T Consensus 66 ~RNRiKR~lREa~R~~~~~l~~~~~~~~~~~~~~~~iv~i~~~~~~~~~~~~~l~~~l~~ll~ 128 (133)
T PRK01903 66 KRNRIKRLMREAYRLEKHVLLDRLETDAGAKNRQLAIAFLYTGRSDEIPSLAEFRREMRKLLQ 128 (133)
T ss_pred hhhHHHHHHHHHHHHhHhhhcccccccccccCcceEEEEEEeccccccCCHHHHHHHHHHHHH
Confidence 466666666666655 4432 3799999888 333456666666666543
No 201
>PRK07094 biotin synthase; Provisional
Probab=29.55 E-value=2.8e+02 Score=25.31 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEe
Q 020083 23 VSEEDGISMIKHAFSKGITFFD 44 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gin~~D 44 (331)
.+.++..+.++.+.+.|++.|-
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~ 91 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIV 91 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEE
Confidence 3678888889999999999774
No 202
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=29.43 E-value=1.1e+02 Score=30.08 Aligned_cols=117 Identities=23% Similarity=0.294 Sum_probs=69.4
Q ss_pred HHHHHHHHcCCCeEe--CccCcCC--------ChHHHHHHHHhhcC---CCCcEEEEeeecccCCCC-------C--Ccc
Q 020083 30 SMIKHAFSKGITFFD--TADVYGQ--------NANETLLGKAFKML---PREKVQIATKFGVVGLRD-------N--GVI 87 (331)
Q Consensus 30 ~~l~~A~~~Gin~~D--tA~~Yg~--------g~sE~~lG~~L~~~---~R~~~~I~tK~~~~~~~~-------~--~~~ 87 (331)
+-.++..+.|+.-+= ||-+|.. |--|+++--+=+.. .+.++||++=+|...... + ...
T Consensus 106 e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~ 185 (546)
T PF01175_consen 106 EHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGLI 185 (546)
T ss_dssp HHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEEE
T ss_pred HHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCCCcceEEEEecccccccchHHHHHhcCceEEE
Confidence 455666778887764 6665531 43444443332222 678899999998664321 0 112
Q ss_pred cCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCHHHHHHHhcC
Q 020083 88 VKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV 160 (331)
Q Consensus 88 ~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 160 (331)
...++..|+ +|+.+.|+|.+- .+++++++..++.+++|+...||+-.--++.++++.+.
T Consensus 186 vEvd~~ri~-------kR~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~ 244 (546)
T PF01175_consen 186 VEVDPSRIE-------KRLEQGYLDEVT-------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVER 244 (546)
T ss_dssp EES-HHHHH-------HHHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHT
T ss_pred EEECHHHHH-------HHHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHc
Confidence 344555555 677788988753 35899999999999999999999988777888887765
No 203
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=29.37 E-value=3.5e+02 Score=22.82 Aligned_cols=83 Identities=8% Similarity=-0.014 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCC-CCCCcccCCChHHHHHHHHHHH
Q 020083 25 EEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGL-RDNGVIVKGTPDYVRSCCEASL 103 (331)
Q Consensus 25 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~-~~~~~~~~~s~~~i~~~~~~sL 103 (331)
+...+.-+++-+..|+. ||.+ |..| ..+++.+++-.|.... ........++-+.+...++.++
T Consensus 77 Pa~LK~wiD~V~~~g~a-------y~~~------g~~l---~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p~~~~~ 140 (184)
T PRK04930 77 PALLKEWLDRVLSRGFA-------SGPG------GNAL---AGKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELTA 140 (184)
T ss_pred cHHHHHHHHHHHhcCcc-------cCCC------CCcc---CCCEEEEEEECCCChHHhCccCcCCCCHHHHHHHHHHHH
Confidence 45567777788888852 4421 1223 3455655544433211 1111122468888999999999
Q ss_pred HHcCCCcccEEEeccCCCCC
Q 020083 104 KRLDVDYIDLYYQHRVDTSV 123 (331)
Q Consensus 104 ~~L~~d~iDl~~lH~~~~~~ 123 (331)
+-+|.+++..+.+|.+....
T Consensus 141 ~~~Gm~~~~~~~~~~~~~~~ 160 (184)
T PRK04930 141 AMCRMHWLSPIIIYWARRQS 160 (184)
T ss_pred HHcCCeEcCcEEEecCCCCC
Confidence 99999999999999886543
No 204
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=29.28 E-value=4.8e+02 Score=24.36 Aligned_cols=16 Identities=13% Similarity=-0.045 Sum_probs=11.2
Q ss_pred HHHHHHHHcCCCeEeC
Q 020083 30 SMIKHAFSKGITFFDT 45 (331)
Q Consensus 30 ~~l~~A~~~Gin~~Dt 45 (331)
+..++|.++|+..+|-
T Consensus 141 ~aA~~a~~aGfDgVei 156 (353)
T cd02930 141 RCAALAREAGYDGVEI 156 (353)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 3344567789999886
No 205
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=29.18 E-value=4.6e+02 Score=24.19 Aligned_cols=92 Identities=16% Similarity=0.114 Sum_probs=50.6
Q ss_pred ccEEEeccCCCCCCHHH-HHHHHHHHHHcCCcceeecCC----CCHHHH----HHHhcCCCceEE-ecccccccc--chh
Q 020083 111 IDLYYQHRVDTSVPIEE-TIGEMKKLVEEGKIKYIGLSE----ASPDTI----RRAHGVHPITAV-QMEWSLWTR--DIE 178 (331)
Q Consensus 111 iDl~~lH~~~~~~~~~~-~~~~l~~l~~~G~ir~iGvS~----~~~~~l----~~~~~~~~~~~~-q~~~n~~~~--~~~ 178 (331)
+.-+.+-.=++....+. ..+.++.+..-..++.+|+.. ..+..+ .+.++...+..+ ++.+|=... +..
T Consensus 143 i~~VvltGGEPL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~Ei~d~~ 222 (321)
T TIGR03821 143 INEVILSGGDPLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHANEIDAEV 222 (321)
T ss_pred CCEEEEeCcccccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChHhCcHHH
Confidence 33344544444432222 445566666667888888753 322222 222333333333 345542211 112
Q ss_pred hhhHHHHHHhCCeeeecccCCccc
Q 020083 179 EEIIPLCRELGIGIVPYSPLGRGF 202 (331)
Q Consensus 179 ~~l~~~~~~~gi~v~a~spl~~G~ 202 (331)
.+.++.+++.|+.+...+++..|+
T Consensus 223 ~~ai~~L~~~Gi~v~~qtvllkgi 246 (321)
T TIGR03821 223 ADALAKLRNAGITLLNQSVLLRGV 246 (321)
T ss_pred HHHHHHHHHcCCEEEecceeeCCC
Confidence 567888899999999999998775
No 206
>PF14502 HTH_41: Helix-turn-helix domain
Probab=28.87 E-value=71 Score=20.63 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCCC--HHHHHHHHHHcCCCCe
Q 020083 236 YFRIENLAKKYKCT--SAQLALAWVLGQGDDV 265 (331)
Q Consensus 236 ~~~l~~ia~~~g~s--~~qlal~~~l~~~~v~ 265 (331)
++.+.+++++++++ ..|-||.++-..+.|.
T Consensus 6 i~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~ 37 (48)
T PF14502_consen 6 IPTISEYSEKFGVSRGTIQNALKFLEENGAIK 37 (48)
T ss_pred cCCHHHHHHHhCcchhHHHHHHHHHHHCCcEE
Confidence 34789999999987 6899999999888543
No 207
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=28.80 E-value=3.8e+02 Score=25.08 Aligned_cols=27 Identities=7% Similarity=0.031 Sum_probs=20.5
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEec
Q 020083 90 GTPDYVRSCCEASLKRLDVDYIDLYYQH 117 (331)
Q Consensus 90 ~s~~~i~~~~~~sL~~L~~d~iDl~~lH 117 (331)
.+.+.+.+.++.. .+++.+++.+|.+-
T Consensus 167 qt~e~~~~tl~~~-~~l~p~~is~y~L~ 193 (353)
T PRK05904 167 LKLKDLDEVFNFI-LKHKINHISFYSLE 193 (353)
T ss_pred CCHHHHHHHHHHH-HhcCCCEEEEEeeE
Confidence 3777888777754 56888998888875
No 208
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=28.46 E-value=4e+02 Score=23.19 Aligned_cols=136 Identities=12% Similarity=0.129 Sum_probs=76.3
Q ss_pred HHHHHHHcCCCeEeC-ccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHHHHcCCC
Q 020083 31 MIKHAFSKGITFFDT-ADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVD 109 (331)
Q Consensus 31 ~l~~A~~~Gin~~Dt-A~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d 109 (331)
-++...++ +|.++. +..|.. -+++.+.+|.+. -.+++..+-|+.....-... -....+.+.+.+-+.++-|+ +
T Consensus 11 ~L~~Ya~~-F~~VEvn~TFY~~-P~~~t~~~W~~~-~p~~F~F~vK~~~~iTH~~~--l~~~~~~~~~~F~~~~~~L~-~ 84 (230)
T PF01904_consen 11 RLAYYARH-FNTVEVNSTFYRI-PSPETVARWREQ-TPEGFRFSVKAPQLITHERR--LRDCAEELWRRFLEALEPLG-E 84 (230)
T ss_dssp HHHHHCCT--SEEEE-HHCCSS-S-HHHHHHHHCT-S-TT-EEEEE--CCCCCCCH--CGSSHHHHHHHHHHHCHHHH-T
T ss_pred HHHHHHHh-CCeEEECcccCCC-CCHHHHHHHHhh-CCCCeEEEEeccHHheeccc--ccccHHHHHHHHHHHHHHHh-h
Confidence 44555554 666664 456765 488899999887 56789999999654331100 01235667577777999999 9
Q ss_pred cccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCHHHHHHHhcCCCceEEeccccccccchhhhhHHHHHHhC
Q 020083 110 YIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELG 189 (331)
Q Consensus 110 ~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~g 189 (331)
.+..+++.-|.....-.+.++.|..+.+.=. ...+ .++.++---+. ..++.++++++|
T Consensus 85 klg~iL~Q~Ppsf~~~~~~~~~l~~~l~~~~------------------~~~~-~avE~R~~sW~---~~~~~~~l~~~~ 142 (230)
T PF01904_consen 85 KLGPILFQFPPSFRFTPENLERLDAFLDRLP------------------RGFR-YAVEFRHPSWF---TEEVFELLREHG 142 (230)
T ss_dssp -EEEEEEE--TT--S-HHHHHHHHHHHHHTT-------------------TS--EEEE--BGGGG---CHHHHHHHHHTT
T ss_pred cceEEEEEcCCCcCCCHHHHHHHHHHHhhcc------------------cccc-eEEecCCcchh---hHHHHHHHHHcC
Confidence 9999999999865444566666666544321 1112 23444322122 257899999999
Q ss_pred Ceeee
Q 020083 190 IGIVP 194 (331)
Q Consensus 190 i~v~a 194 (331)
+..+.
T Consensus 143 ~~~v~ 147 (230)
T PF01904_consen 143 VALVI 147 (230)
T ss_dssp -EEEE
T ss_pred CEEEE
Confidence 98775
No 209
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=28.34 E-value=2.9e+02 Score=24.48 Aligned_cols=51 Identities=16% Similarity=0.099 Sum_probs=31.4
Q ss_pred hhhHHHHHHhCCeeeecccCCccccCCCCccCCCCCCcccccCcCCCCcchhhHHHHHHHHHHHHHHcCC
Q 020083 179 EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKC 248 (331)
Q Consensus 179 ~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~ 248 (331)
+..++.|+..|+.++....... ... . ......+...+.+..+.++|+++|+
T Consensus 97 ~~~i~~a~~lG~~~v~~~~~~~--~~~------~-----------~~~~~~~~~~~~l~~l~~~a~~~gv 147 (284)
T PRK13210 97 KKAIRLAQDLGIRTIQLAGYDV--YYE------E-----------KSEETRQRFIEGLAWAVEQAAAAQV 147 (284)
T ss_pred HHHHHHHHHhCCCEEEECCccc--ccc------c-----------ccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6789999999999987521110 000 0 0012234556667788888888876
No 210
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=28.26 E-value=3.6e+02 Score=23.43 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=28.4
Q ss_pred CceEEeccccccccchhhhhHHHHHHhCCeeeecc
Q 020083 162 PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 196 (331)
Q Consensus 162 ~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~s 196 (331)
.+.++=-+||++++....++.+..++.|+.|+...
T Consensus 185 ~Ivl~GrpY~~~D~~in~~I~~~l~~~G~~vit~d 219 (221)
T PF09989_consen 185 AIVLLGRPYNIYDPFINMGIPDKLRSLGVPVITED 219 (221)
T ss_pred eEEEEcCCCcCCCcccCCchHHHHHHCCCeeeCcc
Confidence 34455558999999888899999999999998643
No 211
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=28.14 E-value=5.1e+02 Score=25.24 Aligned_cols=154 Identities=14% Similarity=0.095 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHc--CCCeEeCccCcCCChHH--HHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHH
Q 020083 24 SEEDGISMIKHAFSK--GITFFDTADVYGQNANE--TLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCC 99 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~--Gin~~DtA~~Yg~g~sE--~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~ 99 (331)
+.+...+-|+...+. |++.|--.+..-....+ .-+-+.|++ ..-.+.+.+.. +.+++.+..--
T Consensus 228 s~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~-~~i~~~~~~~~------------~~~~e~l~~l~ 294 (472)
T TIGR03471 228 SAESVIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGP-LGVTWSCNARA------------NVDYETLKVMK 294 (472)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHhh-cCceEEEEecC------------CCCHHHHHHHH
Q ss_pred HHHHHHc--CCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcce----eecCCCCHHHHHHHhcC-CCceEEeccccc
Q 020083 100 EASLKRL--DVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY----IGLSEASPDTIRRAHGV-HPITAVQMEWSL 172 (331)
Q Consensus 100 ~~sL~~L--~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~----iGvS~~~~~~l~~~~~~-~~~~~~q~~~n~ 172 (331)
+.-+.++ |++..|==.++........+++.++++.+++.|.--. +|+-+.+.+.+++.++. .......+.+++
T Consensus 295 ~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~~~~ 374 (472)
T TIGR03471 295 ENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTIQVSL 374 (472)
T ss_pred HcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCceeeee
Q ss_pred cccchhhhhHHHHHHhCC
Q 020083 173 WTRDIEEEIIPLCRELGI 190 (331)
Q Consensus 173 ~~~~~~~~l~~~~~~~gi 190 (331)
+.+-+...+.+.+++.|.
T Consensus 375 l~P~PGT~l~~~~~~~g~ 392 (472)
T TIGR03471 375 AAPYPGTELYDQAKQNGW 392 (472)
T ss_pred cccCCCcHHHHHHHHCCC
No 212
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=28.13 E-value=2.7e+02 Score=29.77 Aligned_cols=71 Identities=14% Similarity=0.049 Sum_probs=56.7
Q ss_pred cCCChHHHHHHHHHHHHHcCC--------------------------CcccEEEeccCCCCCC---HHHHHHHHHHHHHc
Q 020083 88 VKGTPDYVRSCCEASLKRLDV--------------------------DYIDLYYQHRVDTSVP---IEETIGEMKKLVEE 138 (331)
Q Consensus 88 ~~~s~~~i~~~~~~sL~~L~~--------------------------d~iDl~~lH~~~~~~~---~~~~~~~l~~l~~~ 138 (331)
+...+.++++.++..|+.++. -...+++|..|....+ ...+|..+.++++.
T Consensus 668 rG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~ 747 (885)
T KOG0059|consen 668 RGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKN 747 (885)
T ss_pred cCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 455677899999999998873 4578888888865443 25789999999999
Q ss_pred CCcceeecCCCCHHHHHHHhcC
Q 020083 139 GKIKYIGLSEASPDTIRRAHGV 160 (331)
Q Consensus 139 G~ir~iGvS~~~~~~l~~~~~~ 160 (331)
|+ ++=++.|+.++.+.+-..
T Consensus 748 g~--aiiLTSHsMeE~EaLCtR 767 (885)
T KOG0059|consen 748 GK--AIILTSHSMEEAEALCTR 767 (885)
T ss_pred CC--EEEEEcCCHHHHHHHhhh
Confidence 99 999999999998876544
No 213
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=28.11 E-value=52 Score=27.98 Aligned_cols=67 Identities=18% Similarity=0.215 Sum_probs=40.4
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecC-CCCHHHHHHHhcCCCceEEeccccc
Q 020083 102 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHGVHPITAVQMEWSL 172 (331)
Q Consensus 102 sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~n~ 172 (331)
.+..+|.||+=+.+ .|...-. -..+.+.++.+.-..+.+||. |.+.+.+.+..+...++++|++-+-
T Consensus 14 ~~~~~g~d~~Gfi~--~~~S~R~--v~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e 81 (197)
T PF00697_consen 14 LAAELGADYLGFIF--YPKSPRY--VSPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHTSSEEEEE----TTCTTB----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG
T ss_pred HHHHcCCCEEeeec--CCCCCCc--cCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC
Confidence 34578999988864 3432211 123344444444444478885 4578888888888999999987554
No 214
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=28.10 E-value=5.5e+02 Score=24.75 Aligned_cols=96 Identities=9% Similarity=0.062 Sum_probs=60.4
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--CcceeecCC-C-CHHHHHHHhcCCCceE
Q 020083 90 GTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLSE-A-SPDTIRRAHGVHPITA 165 (331)
Q Consensus 90 ~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvS~-~-~~~~l~~~~~~~~~~~ 165 (331)
+++++..+-+++.++. .+++++-.|-+.. .++.+.+|.++- .+.=+|=-. . ++..++++++....++
T Consensus 262 ~s~~eai~~~~~lle~-----~~i~~iEdPl~~~----D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~ 332 (425)
T TIGR01060 262 LTSEEMIEYYKELVEK-----YPIVSIEDGLSEE----DWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANS 332 (425)
T ss_pred cCHHHHHHHHHHHHhc-----CCcEEEEcCCCcc----cHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCE
Confidence 4555555555544443 3567777776543 355566665543 343333222 2 5889999988888888
Q ss_pred Eecccccccc-chhhhhHHHHHHhCCeeee
Q 020083 166 VQMEWSLWTR-DIEEEIIPLCRELGIGIVP 194 (331)
Q Consensus 166 ~q~~~n~~~~-~~~~~l~~~~~~~gi~v~a 194 (331)
+|+..|-.-- ....++...|+.+|+.++.
T Consensus 333 v~ik~~~iGGItea~~ia~lA~~~Gi~~vv 362 (425)
T TIGR01060 333 ILIKPNQIGTLTETLDAVELAKKAGYTAVI 362 (425)
T ss_pred EEecccccCCHHHHHHHHHHHHHcCCcEEE
Confidence 9888775432 1236789999999999554
No 215
>PHA02128 hypothetical protein
Probab=27.90 E-value=1.9e+02 Score=22.04 Aligned_cols=70 Identities=16% Similarity=0.258 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHcCCcceeecCCCCHHHHHHH-----------------hcCCC-ceEEe---ccccccccchhhhhHHH
Q 020083 126 EETIGEMKKLVEEGKIKYIGLSEASPDTIRRA-----------------HGVHP-ITAVQ---MEWSLWTRDIEEEIIPL 184 (331)
Q Consensus 126 ~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~-----------------~~~~~-~~~~q---~~~n~~~~~~~~~l~~~ 184 (331)
...+....++..+|-+|-|-+......+++.. .+..| +.+.+ .+|.+-.+....++.++
T Consensus 60 ~gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydw 139 (151)
T PHA02128 60 TGLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDW 139 (151)
T ss_pred chHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhh
Confidence 35677778888999999888766554444333 22233 33444 36777766666899999
Q ss_pred HHHhCCeeeec
Q 020083 185 CRELGIGIVPY 195 (331)
Q Consensus 185 ~~~~gi~v~a~ 195 (331)
+-.||+.++.+
T Consensus 140 agthgvefvim 150 (151)
T PHA02128 140 AGTHGVEFVIM 150 (151)
T ss_pred cccCceEEEEe
Confidence 99999988764
No 216
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=27.88 E-value=2e+02 Score=24.75 Aligned_cols=50 Identities=22% Similarity=0.261 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCC
Q 020083 93 DYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 148 (331)
Q Consensus 93 ~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~ 148 (331)
..+.+.+++.++.+|.+ +..+ .+...+.+...+.++.+.++| +..|-++.
T Consensus 14 ~~~~~g~~~~a~~~g~~---~~~~--~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~ 63 (257)
T PF13407_consen 14 QQVIKGAKAAAKELGYE---VEIV--FDAQNDPEEQIEQIEQAISQG-VDGIIVSP 63 (257)
T ss_dssp HHHHHHHHHHHHHHTCE---EEEE--EESTTTHHHHHHHHHHHHHTT-ESEEEEES
T ss_pred HHHHHHHHHHHHHcCCE---EEEe--CCCCCCHHHHHHHHHHHHHhc-CCEEEecC
Confidence 45777888888898843 3333 333344577778888888877 66655543
No 217
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=27.87 E-value=3.1e+02 Score=24.13 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=18.7
Q ss_pred hhhHHHHHHhCCeeeecccCCcc
Q 020083 179 EEIIPLCRELGIGIVPYSPLGRG 201 (331)
Q Consensus 179 ~~l~~~~~~~gi~v~a~spl~~G 201 (331)
+++.+.++++|+.+.++.|...+
T Consensus 50 ~~l~~~~~~~gl~v~s~~~~~~~ 72 (275)
T PRK09856 50 KQIKALAQTYQMPIIGYTPETNG 72 (275)
T ss_pred HHHHHHHHHcCCeEEEecCcccC
Confidence 67888999999999988775543
No 218
>PLN02489 homocysteine S-methyltransferase
Probab=27.71 E-value=5e+02 Score=24.14 Aligned_cols=170 Identities=18% Similarity=0.123 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCC-------Ch----HHHHHHHHhhc---C--------------------CCCc
Q 020083 24 SEEDGISMIKHAFSKGITFFDTADVYGQ-------NA----NETLLGKAFKM---L--------------------PREK 69 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~-------g~----sE~~lG~~L~~---~--------------------~R~~ 69 (331)
+++..+++=+..+++|-+.+-|...-.+ |. .++++-++++- . .+.+
T Consensus 53 ~Pe~V~~vH~~yl~AGAdvI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~ 132 (335)
T PLN02489 53 SPHLIRKVHLDYLEAGADIIITASYQATIQGFESRGLSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGRELSYRP 132 (335)
T ss_pred CHHHHHHHHHHHHHhCCCEEEecccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCC
Confidence 4566677777888999999988864332 22 22333333321 0 1345
Q ss_pred EEEEeeecccCCCC-------CCcccCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--C
Q 020083 70 VQIATKFGVVGLRD-------NGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--K 140 (331)
Q Consensus 70 ~~I~tK~~~~~~~~-------~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G--~ 140 (331)
++|+-=+|+...-. +.+....+.+.+.+.....++.|--..+|++.+--... +.|+..+++.+++.+ +
T Consensus 133 ~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~---l~E~~a~~~~~~~~~~~~ 209 (335)
T PLN02489 133 ILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETIPN---KLEAQAYVELLEEENIKI 209 (335)
T ss_pred cEEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCC---hHHHHHHHHHHHHcCCCC
Confidence 78888888754211 11122367889999888888888556699999975543 456666666666554 4
Q ss_pred cceeecCC---------CCHHHHHHHhc-CCCceEEeccccccccchhhhhHHHHHHh-CCeeeecccCC
Q 020083 141 IKYIGLSE---------ASPDTIRRAHG-VHPITAVQMEWSLWTRDIEEEIIPLCREL-GIGIVPYSPLG 199 (331)
Q Consensus 141 ir~iGvS~---------~~~~~l~~~~~-~~~~~~~q~~~n~~~~~~~~~l~~~~~~~-gi~v~a~spl~ 199 (331)
--.+.++. .+...+...+. ...++++-+.+. ....-..+++..+.+ ++++++| |-+
T Consensus 210 p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGiNC~--~p~~~~~~l~~l~~~~~~pl~vy-PNa 276 (335)
T PLN02489 210 PAWISFNSKDGVNVVSGDSLLECASIADSCKKVVAVGINCT--PPRFIHGLILSIRKVTSKPIVVY-PNS 276 (335)
T ss_pred eEEEEEEeCCCCccCCCCcHHHHHHHHHhcCCceEEEecCC--CHHHHHHHHHHHHhhcCCcEEEE-CCC
Confidence 44444432 23333333332 234566666554 332224555555544 6777776 544
No 219
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=27.70 E-value=5.5e+02 Score=24.60 Aligned_cols=96 Identities=16% Similarity=0.141 Sum_probs=61.8
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--Ccceeec-C-CCCHHHHHHHhcCCCceE
Q 020083 90 GTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGL-S-EASPDTIRRAHGVHPITA 165 (331)
Q Consensus 90 ~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G--~ir~iGv-S-~~~~~~l~~~~~~~~~~~ 165 (331)
+++++..+-+.+.++.+ +++++-.|-+..+ ++.+.+|.++- .+.-+|= + .+++..++++++....++
T Consensus 261 ~t~~eai~~~~~l~e~~-----~i~~iEdPl~~~D----~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~ 331 (408)
T cd03313 261 LTSEELIDYYKELVKKY-----PIVSIEDPFDEDD----WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANA 331 (408)
T ss_pred cCHHHHHHHHHHHHHhC-----CcEEEEeCCCCcC----HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 46666666555554443 5777888866544 44555555552 3322221 1 246899999988888888
Q ss_pred Eecccccccc-chhhhhHHHHHHhCCeeee
Q 020083 166 VQMEWSLWTR-DIEEEIIPLCRELGIGIVP 194 (331)
Q Consensus 166 ~q~~~n~~~~-~~~~~l~~~~~~~gi~v~a 194 (331)
+|+..+-.-- ....++...|+++|+.++.
T Consensus 332 v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 332 LLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred EEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 9888775432 1236788999999999875
No 220
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=27.30 E-value=1e+02 Score=25.64 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=29.0
Q ss_pred HHHHH-HHHcCCCeEeCccCcCCChHHHHHHHHhhcC-CCCcEEEEeeeccc
Q 020083 30 SMIKH-AFSKGITFFDTADVYGQNANETLLGKAFKML-PREKVQIATKFGVV 79 (331)
Q Consensus 30 ~~l~~-A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~-~R~~~~I~tK~~~~ 79 (331)
..|.. ..+.|++.....-.-. ++..|-++|+.. .+.+++|+| .|..
T Consensus 22 ~~l~~~L~~~G~~v~~~~~v~D---d~~~I~~~l~~~~~~~dlVItt-GG~G 69 (170)
T cd00885 22 AFLAKELAELGIEVYRVTVVGD---DEDRIAEALRRASERADLVITT-GGLG 69 (170)
T ss_pred HHHHHHHHHCCCEEEEEEEeCC---CHHHHHHHHHHHHhCCCEEEEC-CCCC
Confidence 34444 4478998776443322 566677777654 567899988 4443
No 221
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=26.89 E-value=2.8e+02 Score=23.19 Aligned_cols=86 Identities=20% Similarity=0.152 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccC-cCCChHHHHHHHHhhcCCCCcEEEEeeeccc-CCCCCCcccCCChHHHHHHHHH
Q 020083 24 SEEDGISMIKHAFSKGITFFDTADV-YGQNANETLLGKAFKMLPREKVQIATKFGVV-GLRDNGVIVKGTPDYVRSCCEA 101 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA~~-Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~-~~~~~~~~~~~s~~~i~~~~~~ 101 (331)
-+...+.-+++-+..|..| +|... |+. +..| ..+++.+++-.|.. .............+.+...++.
T Consensus 93 ~Pa~lK~~iD~v~~~g~~~-~~~~g~~~~-------~~~L---~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~~~~ 161 (199)
T PF02525_consen 93 MPAQLKGWIDRVFTPGFTF-YTPDGKYPS-------GGLL---KGKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPYLRG 161 (199)
T ss_dssp C-HHHHHHHHHHSHTTTSE-EETTSTTCG-------EEST---TTSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHHHHH
T ss_pred cChhHHHHHHHhCcCCeee-ecccccccc-------cccc---ccccEEEEEcCCCChHHhcccCCCCCChhhhHHHHHH
Confidence 3477888999999999999 66543 320 0112 23455554444433 2111000123356778888999
Q ss_pred HHHHcCCCcccEEEeccCC
Q 020083 102 SLKRLDVDYIDLYYQHRVD 120 (331)
Q Consensus 102 sL~~L~~d~iDl~~lH~~~ 120 (331)
.++-+|.+.++.+.++..+
T Consensus 162 ~~~~~G~~~~~~~~~~~~~ 180 (199)
T PF02525_consen 162 ILKFCGIKDVESFSFEGVD 180 (199)
T ss_dssp HHHHTTEEEEEEEEEESTT
T ss_pred HHHhCCCceeeEEEEeCCC
Confidence 9999999999999999876
No 222
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.17 E-value=3e+02 Score=26.08 Aligned_cols=88 Identities=15% Similarity=0.176 Sum_probs=55.7
Q ss_pred EEEeccCCC------------CCCHHHHHHHHHH-HHHcC---CcceeecC--CCCHHH---HHHHhcCCCceEEecccc
Q 020083 113 LYYQHRVDT------------SVPIEETIGEMKK-LVEEG---KIKYIGLS--EASPDT---IRRAHGVHPITAVQMEWS 171 (331)
Q Consensus 113 l~~lH~~~~------------~~~~~~~~~~l~~-l~~~G---~ir~iGvS--~~~~~~---l~~~~~~~~~~~~q~~~n 171 (331)
.+.||.+++ .-+++++++++.+ +.+.| +|+++=+. |.+.++ +.++++..+..+.-++||
T Consensus 237 aiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn 316 (368)
T PRK14456 237 AVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYN 316 (368)
T ss_pred EEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeec
Confidence 356788743 2256888888875 45555 34455343 344444 444455555677888999
Q ss_pred ccccchh--------hhhHHHHHHhCCeeeecccCCc
Q 020083 172 LWTRDIE--------EEIIPLCRELGIGIVPYSPLGR 200 (331)
Q Consensus 172 ~~~~~~~--------~~l~~~~~~~gi~v~a~spl~~ 200 (331)
.+..... ....+..+++|+.+......+.
T Consensus 317 ~~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 317 SIVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGT 353 (368)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCc
Confidence 8755211 4566777889999998777654
No 223
>PLN02540 methylenetetrahydrofolate reductase
Probab=26.14 E-value=6.9e+02 Score=25.24 Aligned_cols=150 Identities=13% Similarity=0.141 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCC-cEEEEeeecccCCCCCCcccCCChHHHHHHHHHHHH
Q 020083 26 EDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPRE-KVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLK 104 (331)
Q Consensus 26 ~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~-~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~ 104 (331)
+...+.+++-.+.|-.|+|....=|+..++..+.-+-.- .++ .+-..-.+... +.++..+...+.+. .
T Consensus 15 ~nL~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~l-q~~~Gie~i~HLTCr---------d~n~~~L~~~L~~a-~ 83 (565)
T PLN02540 15 DNLFERMDRMVAHGPLFCDITWGAGGSTADLTLDIANRM-QNMICVETMMHLTCT---------NMPVEKIDHALETI-K 83 (565)
T ss_pred HHHHHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHH-HHhcCCCeeEEeeec---------CCCHHHHHHHHHHH-H
Confidence 345556666677899999988665554566655433321 111 11111222111 44677777766665 7
Q ss_pred HcCCCcccEEEeccCCCC---------CCHHHHHHHHHHHHHc-CCcceeecCCCCH------------------HHHHH
Q 020083 105 RLDVDYIDLYYQHRVDTS---------VPIEETIGEMKKLVEE-GKIKYIGLSEASP------------------DTIRR 156 (331)
Q Consensus 105 ~L~~d~iDl~~lH~~~~~---------~~~~~~~~~l~~l~~~-G~ir~iGvS~~~~------------------~~l~~ 156 (331)
.+|++ .++.|....+. ..+..+.+.++.+++. |..-.||++.++. ..+..
T Consensus 84 ~~GIr--NILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl~~ 161 (565)
T PLN02540 84 SNGIQ--NILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDLAY 161 (565)
T ss_pred HCCCC--EEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHHHH
Confidence 88865 35555543221 1223355555555554 5567788886532 13333
Q ss_pred HhcC----CCceEEeccccccccchhhhhHHHHHHhCCe
Q 020083 157 AHGV----HPITAVQMEWSLWTRDIEEEIIPLCRELGIG 191 (331)
Q Consensus 157 ~~~~----~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~ 191 (331)
+.+. ..+-+-|.-|+. +...+.++.|++.||.
T Consensus 162 Lk~KvdAGAdFiITQlfFD~---d~f~~f~~~~r~~Gi~ 197 (565)
T PLN02540 162 LKEKVDAGADLIITQLFYDT---DIFLKFVNDCRQIGIT 197 (565)
T ss_pred HHHHHHcCCCEEeeccccCH---HHHHHHHHHHHhcCCC
Confidence 3222 334444554443 2235788899999843
No 224
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=25.99 E-value=6.1e+02 Score=24.53 Aligned_cols=122 Identities=17% Similarity=0.116 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHHHHHc-CCCeEeCccCcCCChHHHHH---HHHhhcCCC-CcEEEEeeecccCCCCCCcccCCChHHHHH
Q 020083 23 VSEEDGISMIKHAFSK-GITFFDTADVYGQNANETLL---GKAFKMLPR-EKVQIATKFGVVGLRDNGVIVKGTPDYVRS 97 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~-Gin~~DtA~~Yg~g~sE~~l---G~~L~~~~R-~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~ 97 (331)
.+.++..+++++..++ ||+-+=-+..-..=.+...+ -+.|++.+. +.+-|.|++... .+..|..
T Consensus 138 ls~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d~~L~~iL~~L~~IphV~~IRI~TR~pvv-----------~P~RIT~ 206 (417)
T TIGR03820 138 PSKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSDDYLDWILTELRAIPHVEVIRIGTRVPVV-----------LPQRITD 206 (417)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEeCCccccCChHHHHHHHHHHhhcCCCceEEEeeccccc-----------cccccCH
Confidence 4677888888888775 88754333211110122233 233333322 346688887543 2334445
Q ss_pred HHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccee------ecCCCCHHHHHHHhc
Q 020083 98 CCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYI------GLSEASPDTIRRAHG 159 (331)
Q Consensus 98 ~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~i------GvS~~~~~~l~~~~~ 159 (331)
.+-+.|++.+ .-.+.+|.-.+.+-.+++.++++.|++.|..-.. | -|.+++.++++.+
T Consensus 207 ell~~Lk~~~---~~~v~~h~nhp~Eit~~a~~Al~~L~~aGI~l~nQsVLLkG-VND~~~~l~~L~~ 270 (417)
T TIGR03820 207 ELVAILKKHH---PVWLNTHFNHPREITASSKKALAKLADAGIPLGNQSVLLAG-VNDCPRIMKKLVH 270 (417)
T ss_pred HHHHHHHhcC---CeEEEEeCCChHhChHHHHHHHHHHHHcCCEEEeeceEECC-cCCCHHHHHHHHH
Confidence 5555666665 3445577655444468999999999999964332 3 3567777766543
No 225
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=25.98 E-value=4.5e+02 Score=24.72 Aligned_cols=94 Identities=13% Similarity=0.168 Sum_probs=60.0
Q ss_pred CCCcEEEEeeecccCCC------CCCcccCCChHHHHHHHHHHHHHcCCC----cccEEEeccCCCCCCHHHHHHHHHHH
Q 020083 66 PREKVQIATKFGVVGLR------DNGVIVKGTPDYVRSCCEASLKRLDVD----YIDLYYQHRVDTSVPIEETIGEMKKL 135 (331)
Q Consensus 66 ~R~~~~I~tK~~~~~~~------~~~~~~~~s~~~i~~~~~~sL~~L~~d----~iDl~~lH~~~~~~~~~~~~~~l~~l 135 (331)
.|.-+-|||-+|..-.. ..++..+++..+|..++....++++.. --.++++--=.+...++.+..+++-+
T Consensus 99 ~r~tlCVSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~N~dnV~~a~~i~ 178 (349)
T COG0820 99 DRNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLLNLDNVVKALEII 178 (349)
T ss_pred CCceEEEecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchhhhHHHHHHHHHhh
Confidence 45667788888776432 234567899999999999999999864 23344443334555567788888877
Q ss_pred HH-cCC---cceeecCCCC-HHHHHHHhc
Q 020083 136 VE-EGK---IKYIGLSEAS-PDTIRRAHG 159 (331)
Q Consensus 136 ~~-~G~---ir~iGvS~~~-~~~l~~~~~ 159 (331)
.+ .|. .|.|=+|+-. ...+.++.+
T Consensus 179 ~~~~G~~ls~R~iTvSTsGi~~~I~~l~~ 207 (349)
T COG0820 179 NDDEGLGLSKRRITVSTSGIVPRIRKLAD 207 (349)
T ss_pred cCcccccccceEEEEecCCCchhHHHHHh
Confidence 63 221 1556666654 345555553
No 226
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.70 E-value=6.2e+02 Score=26.20 Aligned_cols=100 Identities=10% Similarity=0.070 Sum_probs=67.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCc--cCcCCChHHHHHHHHhhcCCCCcEEEEe--eecccCCCCCC--------cccC
Q 020083 22 PVSEEDGISMIKHAFSKGITFFDTA--DVYGQNANETLLGKAFKMLPREKVQIAT--KFGVVGLRDNG--------VIVK 89 (331)
Q Consensus 22 ~~~~~~~~~~l~~A~~~Gin~~DtA--~~Yg~g~sE~~lG~~L~~~~R~~~~I~t--K~~~~~~~~~~--------~~~~ 89 (331)
++|.++.+++++...+.|+.-|=.+ .+|-+-..|..+++.+++.- .++-|++ ++++....-++ ....
T Consensus 135 ~lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~HE~~v~eiire~~-~~i~V~~shev~p~~~~~eR~~TavlnA~L~p 213 (674)
T COG0145 135 PLDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEHELRVAEIIREIG-PDIPVSLSHEVSPEIGEYERANTAVLNAYLSP 213 (674)
T ss_pred cCCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHHHHHHHHHHHHhc-CCceEEechhcchhcCcccchhhheeeeeehH
Confidence 4789999999999999999988766 45666779999999999853 5666666 88764332110 0011
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCC
Q 020083 90 GTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP 124 (331)
Q Consensus 90 ~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~ 124 (331)
--....+++++.|+.-|.+ ..++++-+.-...+
T Consensus 214 -i~~~yl~~v~~~l~~~g~~-~~l~~m~sdGgl~~ 246 (674)
T COG0145 214 -ILRRYLEAVKDALKERGIK-ARLMVMQSDGGLVS 246 (674)
T ss_pred -HHHHHHHHHHHHHHhcCCC-ceeEEEecCCcccc
Confidence 1233445667777777755 57777777644333
No 227
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=25.66 E-value=2.9e+02 Score=23.55 Aligned_cols=94 Identities=12% Similarity=0.050 Sum_probs=55.2
Q ss_pred HHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCHHHHHHHhcCCCceEEecccc-cccc
Q 020083 97 SCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWS-LWTR 175 (331)
Q Consensus 97 ~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n-~~~~ 175 (331)
+++=+.|.. .-..+..+.+.. -.+ ...+|...|. ..+-.+-.+.+.+.++++-....++.+... .-..
T Consensus 12 ~~v~~~L~~---~~~~V~~l~R~~----~~~---~~~~l~~~g~-~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~ 80 (233)
T PF05368_consen 12 RSVVRALLS---AGFSVRALVRDP----SSD---RAQQLQALGA-EVVEADYDDPESLVAALKGVDAVFSVTPPSHPSEL 80 (233)
T ss_dssp HHHHHHHHH---TTGCEEEEESSS----HHH---HHHHHHHTTT-EEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHH
T ss_pred HHHHHHHHh---CCCCcEEEEecc----chh---hhhhhhcccc-eEeecccCCHHHHHHHHcCCceEEeecCcchhhhh
Confidence 334444444 335677776664 122 2444555666 455555557888888887655544444433 1112
Q ss_pred chhhhhHHHHHHhCCeeeecccCCcc
Q 020083 176 DIEEEIIPLCRELGIGIVPYSPLGRG 201 (331)
Q Consensus 176 ~~~~~l~~~~~~~gi~v~a~spl~~G 201 (331)
.....++++|++.||..+.+|.++..
T Consensus 81 ~~~~~li~Aa~~agVk~~v~ss~~~~ 106 (233)
T PF05368_consen 81 EQQKNLIDAAKAAGVKHFVPSSFGAD 106 (233)
T ss_dssp HHHHHHHHHHHHHT-SEEEESEESSG
T ss_pred hhhhhHHHhhhccccceEEEEEeccc
Confidence 23378999999999999999888754
No 228
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=25.56 E-value=4.5e+02 Score=22.87 Aligned_cols=98 Identities=17% Similarity=0.296 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc------eeecCCC-CHHHHHHHhcCCCceEE
Q 020083 94 YVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK------YIGLSEA-SPDTIRRAHGVHPITAV 166 (331)
Q Consensus 94 ~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir------~iGvS~~-~~~~l~~~~~~~~~~~~ 166 (331)
.....++..-+-.+-..|+-+++...+.....+|-+...++|.+.|.-. +-|+++. +.-...+.-....+.++
T Consensus 77 yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLDSvvRA~kVF~~~~ftII 156 (235)
T COG2949 77 YYTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLDSVVRARKVFGTNDFTII 156 (235)
T ss_pred hHHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHHHHHHHHHHcCcCcEEEE
Confidence 3455566666666667899999999988888889999999999998643 3355443 12222333333455555
Q ss_pred eccccccccchhhhhHHHHHHhCCeeeeccc
Q 020083 167 QMEWSLWTRDIEEEIIPLCRELGIGIVPYSP 197 (331)
Q Consensus 167 q~~~n~~~~~~~~~l~~~~~~~gi~v~a~sp 197 (331)
--+|+. +..+=.|+.+||.-+++..
T Consensus 157 tQ~FHc------eRAlfiA~~~gIdAic~~a 181 (235)
T COG2949 157 TQRFHC------ERALFIARQMGIDAICFAA 181 (235)
T ss_pred eccccc------HHHHHHHHHhCCceEEecC
Confidence 444442 4566789999999888643
No 229
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=25.52 E-value=1.1e+02 Score=29.78 Aligned_cols=101 Identities=17% Similarity=0.207 Sum_probs=66.3
Q ss_pred ChHHHHHHHHhhcC---CCCcEEEEeeecccCCCCC-------C--cccCCChHHHHHHHHHHHHHcCCCcccEEEeccC
Q 020083 52 NANETLLGKAFKML---PREKVQIATKFGVVGLRDN-------G--VIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRV 119 (331)
Q Consensus 52 g~sE~~lG~~L~~~---~R~~~~I~tK~~~~~~~~~-------~--~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~ 119 (331)
|.-|+++..+-+.+ .+.++++++-+|......+ . .....+...|. +||.+.|+|..
T Consensus 148 GTyeT~~~~~r~h~~gdL~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~-------~Rl~t~y~d~~----- 215 (561)
T COG2987 148 GTYETFAEAGRQHFGGDLKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRID-------KRLRTGYLDEI----- 215 (561)
T ss_pred chHHHHHHHHHHhcCCCccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHH-------HHHhcchhhhh-----
Confidence 44555554443332 5778899888876543221 0 01122233333 68889998862
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcceeecCCCCHHHHHHHhcC-CCceEE
Q 020083 120 DTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV-HPITAV 166 (331)
Q Consensus 120 ~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~ 166 (331)
...++|++...++..++|+-..||+-.--++.+.++++. ..+|++
T Consensus 216 --a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~v 261 (561)
T COG2987 216 --AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLV 261 (561)
T ss_pred --cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCcee
Confidence 345899999999999999999999988888888888765 334433
No 230
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=25.49 E-value=4.1e+02 Score=22.43 Aligned_cols=98 Identities=17% Similarity=0.206 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHcCCCc--ccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCH--HHHHHHhcCCCceEEecc
Q 020083 94 YVRSCCEASLKRLDVDY--IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP--DTIRRAHGVHPITAVQME 169 (331)
Q Consensus 94 ~i~~~~~~sL~~L~~d~--iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~--~~l~~~~~~~~~~~~q~~ 169 (331)
.....+.+.+++.+... +=+- +.............+.++.|++.|- .+.+.++.. ..+.. +...+++.+-+.
T Consensus 100 ~~~~~l~~~l~~~~~~~~~lvle-i~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~-l~~l~~d~iKld 175 (241)
T smart00052 100 DLVPRVLELLEETGLPPQRLELE-ITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSY-LKRLPVDLLKID 175 (241)
T ss_pred hHHHHHHHHHHHcCCCHHHEEEE-EeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHH-HHhCCCCeEEEC
Confidence 34456667777766542 2221 1111122233455688999999996 455655532 23333 333456666555
Q ss_pred cccccc--------chhhhhHHHHHHhCCeeeec
Q 020083 170 WSLWTR--------DIEEEIIPLCRELGIGIVPY 195 (331)
Q Consensus 170 ~n~~~~--------~~~~~l~~~~~~~gi~v~a~ 195 (331)
.+++.. ..-..+...|+..|+.+++-
T Consensus 176 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 176 KSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred HHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 544422 11257889999999999874
No 231
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=25.44 E-value=5.6e+02 Score=23.87 Aligned_cols=111 Identities=20% Similarity=0.192 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHH--------------------hhcCCCCcEEEEeeecccCCC
Q 020083 23 VSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKA--------------------FKMLPREKVQIATKFGVVGLR 82 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~--------------------L~~~~R~~~~I~tK~~~~~~~ 82 (331)
.+.++-..+.++|-+.|+.||=|.-.-. +=+.+-+. +.+ ..+.++|+|=.
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~---svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~-~gkPvilStGm------ 142 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLE---SADFLEDLGVPRFKIPSGEITNAPLLKKIAR-FGKPVILSTGM------ 142 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHH---HHHHHHhcCCCEEEECcccccCHHHHHHHHh-cCCcEEEECCC------
Confidence 4678888999999999999986653211 11222111 111 23334454433
Q ss_pred CCCcccCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCC-CCHH-HHHHHHHHHHHcCCcceeecCCCCHH
Q 020083 83 DNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIE-ETIGEMKKLVEEGKIKYIGLSEASPD 152 (331)
Q Consensus 83 ~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~-~~~~-~~~~~l~~l~~~G~ir~iGvS~~~~~ 152 (331)
.+.++|..+++-..+ -|.+.-++.++|+.... .+.+ --+.++..|++.=. .-||+|.|+..
T Consensus 143 -------atl~Ei~~Av~~i~~-~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt~G 205 (329)
T TIGR03569 143 -------ATLEEIEAAVGVLRD-AGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHTLG 205 (329)
T ss_pred -------CCHHHHHHHHHHHHH-cCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhC-CCEEECCCCcc
Confidence 167888888887653 34321258999976421 2222 22445555554322 47999999754
No 232
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=25.28 E-value=6.8e+02 Score=24.80 Aligned_cols=99 Identities=9% Similarity=0.092 Sum_probs=54.8
Q ss_pred HHHHHHHHhhcC----CCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCC----H
Q 020083 54 NETLLGKAFKML----PREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP----I 125 (331)
Q Consensus 54 sE~~lG~~L~~~----~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~----~ 125 (331)
+++.|-+++.+. +.+-++|.|-+- .+-|-..++...+.++.+.++++.++.|..... .
T Consensus 69 ~~~~L~~aI~~~~~~~~P~~I~V~sTC~--------------selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~ 134 (511)
T TIGR01278 69 SQTRLVDTVRRVDDRFKPDLIVVTPSCT--------------SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAA 134 (511)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCCh--------------HHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHH
Confidence 566777777653 344566766662 223333344445555544688999998875543 2
Q ss_pred HHHHHHHHH-H----------HHcCCcceeecCCC------CHHHHHHHhcCCCceEE
Q 020083 126 EETIGEMKK-L----------VEEGKIKYIGLSEA------SPDTIRRAHGVHPITAV 166 (331)
Q Consensus 126 ~~~~~~l~~-l----------~~~G~ir~iGvS~~------~~~~l~~~~~~~~~~~~ 166 (331)
+.+++.+-+ + .+++.|.=||.++. +...++++++...+.++
T Consensus 135 ~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn 192 (511)
T TIGR01278 135 DRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVN 192 (511)
T ss_pred HHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEE
Confidence 223332221 1 13456888888752 33456666666555444
No 233
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=25.24 E-value=4.8e+02 Score=23.05 Aligned_cols=154 Identities=16% Similarity=0.192 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccC-cCC--ChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHH
Q 020083 24 SEEDGISMIKHAFSKGITFFDTADV-YGQ--NANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCE 100 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA~~-Yg~--g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 100 (331)
+.+|+. .|++.|...+|.=+- -|. .....++.+.... -..+.-||..+|-.+ +.+..+..+..
T Consensus 9 ~~~EA~----~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i~~~-~~~~~pvSAtiGDlp---------~~p~~~~~aa~ 74 (235)
T PF04476_consen 9 NVEEAE----EALAGGADIIDLKNPAEGALGALFPWVIREIVAA-VPGRKPVSATIGDLP---------MKPGTASLAAL 74 (235)
T ss_pred CHHHHH----HHHhCCCCEEEccCCCCCCCCCCCHHHHHHHHHH-cCCCCceEEEecCCC---------CCchHHHHHHH
Confidence 455554 577889999997542 221 1245555444333 333466888887542 24555665555
Q ss_pred HHHHHcCCCcccEEEeccCCCCCCH---HHHHHHHHHHHHcCCcceeecCCCC------HHHHHHHhcCCCceEEeccc-
Q 020083 101 ASLKRLDVDYIDLYYQHRVDTSVPI---EETIGEMKKLVEEGKIKYIGLSEAS------PDTIRRAHGVHPITAVQMEW- 170 (331)
Q Consensus 101 ~sL~~L~~d~iDl~~lH~~~~~~~~---~~~~~~l~~l~~~G~ir~iGvS~~~------~~~l~~~~~~~~~~~~q~~~- 170 (331)
..- .-|+|||=+-+.-..+..... ..+.++++++-.+.++-..+++.+. +..+.+......++.+++.-
T Consensus 75 ~~a-~~GvdyvKvGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa 153 (235)
T PF04476_consen 75 GAA-ATGVDYVKVGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTA 153 (235)
T ss_pred HHH-hcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecc
Confidence 444 358899888776444332211 1222333333345568888888873 44555555555666666642
Q ss_pred -----cccccc---hhhhhHHHHHHhCCee
Q 020083 171 -----SLWTRD---IEEEIIPLCRELGIGI 192 (331)
Q Consensus 171 -----n~~~~~---~~~~l~~~~~~~gi~v 192 (331)
++++.- ...+.++.|+++|+-.
T Consensus 154 ~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 154 DKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred cCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 233221 1156777788777654
No 234
>PRK05406 LamB/YcsF family protein; Provisional
Probab=25.24 E-value=2e+02 Score=25.65 Aligned_cols=82 Identities=12% Similarity=0.203 Sum_probs=48.8
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCCCC-CCcc
Q 020083 9 GLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRD-NGVI 87 (331)
Q Consensus 9 glG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~-~~~~ 87 (331)
+||.|.+| +.++..++|..|- |=|.-|.| ...++-+.++-.....|-|-..-++.+..+ ++..
T Consensus 13 ~fG~w~~g-------~D~~lmp~IssAN------IACG~HAG---Dp~~M~~tv~lA~~~gV~IGAHPgypD~~gFGRR~ 76 (246)
T PRK05406 13 SFGAWKMG-------DDEALLPLVTSAN------IACGFHAG---DPAVMRRTVRLAKENGVAIGAHPGYPDLEGFGRRN 76 (246)
T ss_pred CCCCCCCC-------CHHHHHHHhhhHH------HhccccCC---CHHHHHHHHHHHHHcCCeEccCCCCCccCCCCCCC
Confidence 67887765 4466667776663 12233566 466676766544445566655555443322 2334
Q ss_pred cCCChHHHHHHHHHHHHHc
Q 020083 88 VKGTPDYVRSCCEASLKRL 106 (331)
Q Consensus 88 ~~~s~~~i~~~~~~sL~~L 106 (331)
.+.|++++..++...+..|
T Consensus 77 m~~s~~el~~~v~yQigAL 95 (246)
T PRK05406 77 MDLSPEELYALVLYQIGAL 95 (246)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 5788999888877666555
No 235
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=25.18 E-value=4.8e+02 Score=23.03 Aligned_cols=111 Identities=10% Similarity=0.126 Sum_probs=66.1
Q ss_pred EeccCCCCCCH---HHHHHHH-----HHHHHcCCcceeecCCCCH----H---HH---HHHhcCCCc-eEEecccccccc
Q 020083 115 YQHRVDTSVPI---EETIGEM-----KKLVEEGKIKYIGLSEASP----D---TI---RRAHGVHPI-TAVQMEWSLWTR 175 (331)
Q Consensus 115 ~lH~~~~~~~~---~~~~~~l-----~~l~~~G~ir~iGvS~~~~----~---~l---~~~~~~~~~-~~~q~~~n~~~~ 175 (331)
.-|+|.+.... .+.|+.| ....+.|.=-++++.-|+. + .+ .+++....+ .+=.+.++....
T Consensus 31 ~AhdP~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr~iP~e~~~~l~~L~~~l~~e~VvAiGEiGLe~~t~ 110 (254)
T COG1099 31 LAHDPYPMKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVHPRAIPPELEEVLEELEELLSNEDVVAIGEIGLEEATD 110 (254)
T ss_pred cccCCCCcccHHHHHHHHHHHHccchhhHHhhCceeeEEeccCCCCCCchHHHHHHHHHhhcccCCeeEeeecccccCCH
Confidence 35888665443 2333333 2456777777777765542 2 12 222332333 333566665554
Q ss_pred c---hhhhhHHHHHHhCCeeeecccCCccccCCCCccCCCCCCcccccCcCCCCcchhhHHHHHHHHHHHHHHcCCCHHH
Q 020083 176 D---IEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQ 252 (331)
Q Consensus 176 ~---~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q 252 (331)
. ..++=++.|++.+|+++.+.|=.+ -.+...++-+++.+.|+.+.+
T Consensus 111 ~E~evf~~QL~LA~e~dvPviVHTPr~n-------------------------------K~e~t~~ildi~~~~~l~~~l 159 (254)
T COG1099 111 EEKEVFREQLELARELDVPVIVHTPRRN-------------------------------KKEATSKILDILIESGLKPSL 159 (254)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEeCCCCc-------------------------------chhHHHHHHHHHHHcCCChhh
Confidence 3 124567899999999999988542 123446788888889988887
Q ss_pred HHHH
Q 020083 253 LALA 256 (331)
Q Consensus 253 lal~ 256 (331)
+.+-
T Consensus 160 vvID 163 (254)
T COG1099 160 VVID 163 (254)
T ss_pred eehh
Confidence 6643
No 236
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=25.12 E-value=5.5e+02 Score=23.67 Aligned_cols=136 Identities=10% Similarity=0.066 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc----------cCcCC--ChHHHHHHHHhhcCCCC--cEEEEeeecccCCCCCCcccC
Q 020083 24 SEEDGISMIKHAFSKGITFFDTA----------DVYGQ--NANETLLGKAFKMLPRE--KVQIATKFGVVGLRDNGVIVK 89 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA----------~~Yg~--g~sE~~lG~~L~~~~R~--~~~I~tK~~~~~~~~~~~~~~ 89 (331)
+.++..+..+.+.+.|+..+|.- ..+|. ...-+.+.+.++.. |+ ++-|+.|+......
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av-~~a~d~pv~vKiR~G~~~------- 146 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEV-VNAVDVPVTLKIRTGWAP------- 146 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHH-HHhcCCceEEEEEccccC-------
Confidence 67777777888888999999932 12221 01233444444331 11 34577777422110
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCH--HHHHHHHHHHHHcCCcceeecCCC-CHHHHHHHhcCCCceEE
Q 020083 90 GTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGVHPITAV 166 (331)
Q Consensus 90 ~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~--~~~~~~l~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~ 166 (331)
+..... .+-+-++..| +|.+.+|.-...... ...|+.+.++++.=.|-=||.... ++++++++++....+.+
T Consensus 147 -~~~~~~-~~a~~le~~G---~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgV 221 (321)
T PRK10415 147 -EHRNCV-EIAQLAEDCG---IQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221 (321)
T ss_pred -CcchHH-HHHHHHHHhC---CCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEE
Confidence 111111 2223356677 566778865432111 124677777777666777777664 78888888877777878
Q ss_pred eccccc
Q 020083 167 QMEWSL 172 (331)
Q Consensus 167 q~~~n~ 172 (331)
|+-=-+
T Consensus 222 miGR~~ 227 (321)
T PRK10415 222 MIGRAA 227 (321)
T ss_pred EEChHh
Confidence 775333
No 237
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=25.03 E-value=2.5e+02 Score=25.23 Aligned_cols=19 Identities=11% Similarity=0.193 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCCcceee
Q 020083 127 ETIGEMKKLVEEGKIKYIG 145 (331)
Q Consensus 127 ~~~~~l~~l~~~G~ir~iG 145 (331)
..|.+|++++++||.--+=
T Consensus 150 ~~wpTL~em~~~GkrViv~ 168 (267)
T cd08590 150 PNWPTKEDMLNSGKQVVLA 168 (267)
T ss_pred CCCCCHHHHHhCCCEEEEE
Confidence 4578899999999875553
No 238
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=24.90 E-value=3.7e+02 Score=21.71 Aligned_cols=63 Identities=10% Similarity=0.100 Sum_probs=39.4
Q ss_pred CCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHHHHcC--CCcccEEEeccCCCC-CCHHHHHHHHHHHHHc
Q 020083 67 REKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLD--VDYIDLYYQHRVDTS-VPIEETIGEMKKLVEE 138 (331)
Q Consensus 67 R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~--~d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~~ 138 (331)
|=-+.|+-|++.. -..++.|++.+.++++.+. ....|++++-.+... .+..++.+.|..|.++
T Consensus 49 RlG~sVSKKvg~~---------AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 49 RLGLAVSRKVDTR---------AVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred EEEEEEeccccCc---------chhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 3345666676432 2256777777777776542 234498888877643 4667777777776554
No 239
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=24.77 E-value=1.5e+02 Score=24.90 Aligned_cols=47 Identities=17% Similarity=0.335 Sum_probs=31.5
Q ss_pred HHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecC
Q 020083 98 CCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 147 (331)
Q Consensus 98 ~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS 147 (331)
+++++|..-. -+|++++.......-++-++.|..+..+|++|++-+-
T Consensus 68 ~f~~~L~e~s---n~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG 114 (173)
T PF10171_consen 68 SFEDALLEAS---NDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLG 114 (173)
T ss_pred HHHHHHHHHh---CceeccChhhcCchHHHHHHHHHHHhcCCceEEeeee
Confidence 4444444432 5667776554433446778999999999999998553
No 240
>PRK03670 competence damage-inducible protein A; Provisional
Probab=24.74 E-value=1.4e+02 Score=26.69 Aligned_cols=64 Identities=13% Similarity=-0.020 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcC-CC-CcEEEEeeecccCCCCCCcccCCChHHHHHHHH
Q 020083 28 GISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKML-PR-EKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCE 100 (331)
Q Consensus 28 ~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~-~R-~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 100 (331)
+.-+-+...+.|++.....-... .+..|-++|+.. .+ .+++|+| .|..... .|.+++.+.+++.
T Consensus 22 ~~~la~~L~~~G~~v~~~~iV~D---d~~~I~~~l~~a~~~~~DlVItt-GGlGpt~-----dD~T~eava~a~g 87 (252)
T PRK03670 22 SAFIAQKLTEKGYWVRRITTVGD---DVEEIKSVVLEILSRKPEVLVIS-GGLGPTH-----DDVTMLAVAEALG 87 (252)
T ss_pred HHHHHHHHHHCCCEEEEEEEcCC---CHHHHHHHHHHHhhCCCCEEEEC-CCccCCC-----CCchHHHHHHHhC
Confidence 44455556678998766544433 566677787764 43 4888888 5544332 2666666665443
No 241
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=24.57 E-value=1.3e+02 Score=26.74 Aligned_cols=85 Identities=9% Similarity=0.010 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHHHH
Q 020083 26 EDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKR 105 (331)
Q Consensus 26 ~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~ 105 (331)
....+.++.+-+.|++.++.++.+-. .++...-++++.....-+.+.|-+|...... ....+++.+.+.+++-|+.
T Consensus 84 ~~~~~yl~~~k~lGf~~IEiSdGti~-l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~~~---~~~~~~~~~i~~~~~dLeA 159 (244)
T PF02679_consen 84 GKFDEYLEECKELGFDAIEISDGTID-LPEEERLRLIRKAKEEGFKVLSEVGKKDPES---DFSLDPEELIEQAKRDLEA 159 (244)
T ss_dssp T-HHHHHHHHHHCT-SEEEE--SSS----HHHHHHHHHHHCCTTSEEEEEES-SSHHH---HTT--CCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCEEEecCCcee-CCHHHHHHHHHHHHHCCCEEeecccCCCchh---cccCCHHHHHHHHHHHHHC
Confidence 34567788888888888888876653 3566666667664555588999998654221 1233477777777777766
Q ss_pred cCCCcccEEEecc
Q 020083 106 LDVDYIDLYYQHR 118 (331)
Q Consensus 106 L~~d~iDl~~lH~ 118 (331)
| .|.+++-.
T Consensus 160 -G---A~~ViiEa 168 (244)
T PF02679_consen 160 -G---ADKVIIEA 168 (244)
T ss_dssp -T---ECEEEE--
T ss_pred -C---CCEEEEee
Confidence 5 45566543
No 242
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=24.36 E-value=1.1e+02 Score=30.63 Aligned_cols=22 Identities=14% Similarity=0.326 Sum_probs=17.9
Q ss_pred hhhhHHHHHHhCCeeeecccCC
Q 020083 178 EEEIIPLCRELGIGIVPYSPLG 199 (331)
Q Consensus 178 ~~~l~~~~~~~gi~v~a~spl~ 199 (331)
.+++++.|+++||.|+-=-++.
T Consensus 162 ~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 162 LKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred HHHHHHHHHHCCCEEEEEEccC
Confidence 3789999999999998754543
No 243
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=24.26 E-value=3e+02 Score=24.13 Aligned_cols=105 Identities=19% Similarity=0.197 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEe----------eecccCCCCCCc------c
Q 020083 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIAT----------KFGVVGLRDNGV------I 87 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~t----------K~~~~~~~~~~~------~ 87 (331)
+.+...++++.|-..|.+|+|-|.+ -+++..+... ..=.+-|+. |.|..--+-+++ .
T Consensus 25 d~~~V~~i~~AA~~ggAt~vDIAad------p~LV~~~~~~-s~lPICVSaVep~~f~~aV~AGAdliEIGNfDsFY~qG 97 (242)
T PF04481_consen 25 DAESVAAIVKAAEIGGATFVDIAAD------PELVKLAKSL-SNLPICVSAVEPELFVAAVKAGADLIEIGNFDSFYAQG 97 (242)
T ss_pred CHHHHHHHHHHHHccCCceEEecCC------HHHHHHHHHh-CCCCeEeecCCHHHHHHHHHhCCCEEEecchHHHHhcC
Confidence 7788899999999999999999863 3444433221 111122221 111110000111 2
Q ss_pred cCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC
Q 020083 88 VKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG 139 (331)
Q Consensus 88 ~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G 139 (331)
..++.++|..-.++..+.|- |+.+---..+..++++.++.-++|++.|
T Consensus 98 r~f~a~eVL~Lt~~tR~LLP----~~~LsVTVPHiL~ld~Qv~LA~~L~~~G 145 (242)
T PF04481_consen 98 RRFSAEEVLALTRETRSLLP----DITLSVTVPHILPLDQQVQLAEDLVKAG 145 (242)
T ss_pred CeecHHHHHHHHHHHHHhCC----CCceEEecCccccHHHHHHHHHHHHHhC
Confidence 46788888888888888873 3333333344456777777777777776
No 244
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=24.08 E-value=1.3e+02 Score=27.54 Aligned_cols=79 Identities=20% Similarity=0.130 Sum_probs=55.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCCeEeecCCCCHHHHHHHHhccC--------C--CCCHHHHHHHHhhCCCCcc-
Q 020083 237 FRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLR--------I--KLTKEDLKEISDAVPIEEV- 305 (331)
Q Consensus 237 ~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~--------~--~L~~~~~~~i~~~~~~~~~- 305 (331)
++.+++++++++...---+.=++..+.+..|++.+.+..|.+-.++++. . .+|.+|.++|-++.+...+
T Consensus 41 ~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~ 120 (342)
T COG0673 41 ERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVK 120 (342)
T ss_pred HHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCc
Confidence 4688899999987222225567788888888888888888887777664 2 3889999988888766532
Q ss_pred CCCCCcchhh
Q 020083 306 AGDRDPEGFD 315 (331)
Q Consensus 306 ~~~~~~~~~~ 315 (331)
..-.++..+.
T Consensus 121 l~v~~~~Rf~ 130 (342)
T COG0673 121 LMVGFNRRFD 130 (342)
T ss_pred eeeehhhhcC
Confidence 3444444433
No 245
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=24.02 E-value=38 Score=25.32 Aligned_cols=67 Identities=15% Similarity=0.193 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeEeecCCCCHHHHHHHHhccC-------CCCCHHHHHHHHhhCC
Q 020083 233 KNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLR-------IKLTKEDLKEISDAVP 301 (331)
Q Consensus 233 ~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~-------~~L~~~~~~~i~~~~~ 301 (331)
.+.++++..+++..|+.+..-.. ..+.+|. ....+|..+.+.|.+.+...+ -+||+-+...|++.+.
T Consensus 7 ~~~l~El~~L~~t~g~~vv~~~~-q~~~~~~-p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~ 80 (95)
T PF13167_consen 7 EESLEELEELAETAGYEVVGTVV-QKRRKPD-PKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQRNLEKALG 80 (95)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEE-ecCCCCC-cceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHC
Confidence 44567899999988876544221 1223333 567899999999999887554 3699999999999984
No 246
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.01 E-value=5.1e+02 Score=24.27 Aligned_cols=88 Identities=16% Similarity=0.159 Sum_probs=0.0
Q ss_pred EEEeccCCCCC-----------CHHHHHHHHHHHHHcCCcc----eeecCCCCH-----HHHHHHhcCCCceEEeccccc
Q 020083 113 LYYQHRVDTSV-----------PIEETIGEMKKLVEEGKIK----YIGLSEASP-----DTIRRAHGVHPITAVQMEWSL 172 (331)
Q Consensus 113 l~~lH~~~~~~-----------~~~~~~~~l~~l~~~G~ir----~iGvS~~~~-----~~l~~~~~~~~~~~~q~~~n~ 172 (331)
.+.||.|+... +++++++++.++.++-.-+ ++=+.+.+- ..+.+++...+..++-++||.
T Consensus 215 aiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~ 294 (342)
T PRK14465 215 AISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNT 294 (342)
T ss_pred EEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCC
Q ss_pred cccchh-------hhhHHHHHHhCCeeeecccCCc
Q 020083 173 WTRDIE-------EEIIPLCRELGIGIVPYSPLGR 200 (331)
Q Consensus 173 ~~~~~~-------~~l~~~~~~~gi~v~a~spl~~ 200 (331)
-..... ....+..+++|+.+......+.
T Consensus 295 ~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 295 EFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
No 247
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=23.98 E-value=5.4e+02 Score=24.17 Aligned_cols=137 Identities=13% Similarity=0.132 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcCCC-hHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHH
Q 020083 23 VSEEDGISMIKHAFSKGITFFDTADVYGQN-ANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEA 101 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g-~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~ 101 (331)
.+.++..+.++.+.+.|++-|=--..-+.- ..-+.+.+.++..+..--.+...++.. +.+.+ +
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p~i~Iei~~l-----------t~e~~-----~ 166 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLAREYFSSLAIEVQPL-----------NEEEY-----K 166 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCccccccccC-----------CHHHH-----H
Q ss_pred HHHHcCCCcccEEE----------eccCCCCCCHHHHHHHHHHHHHcCCcc-----eeecCCCCHHHHHHHhcCCCceE-
Q 020083 102 SLKRLDVDYIDLYY----------QHRVDTSVPIEETIGEMKKLVEEGKIK-----YIGLSEASPDTIRRAHGVHPITA- 165 (331)
Q Consensus 102 sL~~L~~d~iDl~~----------lH~~~~~~~~~~~~~~l~~l~~~G~ir-----~iGvS~~~~~~l~~~~~~~~~~~- 165 (331)
-|+..|++++-+.+ +|........++.+++++.+++.|.-. =+|+..+..+.+.-+.....+..
T Consensus 167 ~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~ 246 (366)
T TIGR02351 167 KLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALLGLDDWRTDAFFTAYHLRYLQKK 246 (366)
T ss_pred HHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEEeCchhHHHHHHHHHHHHHHHHH
Q ss_pred -----Eecccccccc
Q 020083 166 -----VQMEWSLWTR 175 (331)
Q Consensus 166 -----~q~~~n~~~~ 175 (331)
..+++|.+.+
T Consensus 247 ~~~~~~sv~~~~l~P 261 (366)
T TIGR02351 247 YWKTEISISVPRLRP 261 (366)
T ss_pred cCCCCcccccccccc
No 248
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.90 E-value=4.8e+02 Score=22.55 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEeee
Q 020083 23 VSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKF 76 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~ 76 (331)
.+.+++.++++..++.|++.++..-... ...+.|.+.-++.++--+-.-|++
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~--~~~~~I~~l~~~~p~~~IGAGTVl 75 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTP--AALEAIRLIAKEVPEALIGAGTVL 75 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCc--cHHHHHHHHHHHCCCCEEEEeecc
Confidence 3789999999999999999999773333 356677544444343333344555
No 249
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=23.73 E-value=1.9e+02 Score=20.93 Aligned_cols=64 Identities=14% Similarity=0.037 Sum_probs=37.9
Q ss_pred HcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC-CcceeecCCC-CHHHHHHHhcCCCceEEecccc
Q 020083 105 RLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEA-SPDTIRRAHGVHPITAVQMEWS 171 (331)
Q Consensus 105 ~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~~n 171 (331)
.++....|++++-...+.....++++.+ ++.+ .++-|.+++. +.....++.+..-.+++.-+++
T Consensus 38 ~~~~~~~d~iiid~~~~~~~~~~~~~~i---~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~ 103 (112)
T PF00072_consen 38 LLKKHPPDLIIIDLELPDGDGLELLEQI---RQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFS 103 (112)
T ss_dssp HHHHSTESEEEEESSSSSSBHHHHHHHH---HHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEESSSS
T ss_pred HhcccCceEEEEEeeecccccccccccc---ccccccccEEEecCCCCHHHHHHHHHCCCCEEEECCCC
Confidence 3333449999998665555444555555 4444 7777777755 4566666665544455544443
No 250
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=23.67 E-value=5.6e+02 Score=23.42 Aligned_cols=133 Identities=14% Similarity=0.114 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC----------ccCcCCC--hHHHHHHHHhhcC-CCCcEEEEeeecccCCCCCCcccCC
Q 020083 24 SEEDGISMIKHAFSKGITFFDT----------ADVYGQN--ANETLLGKAFKML-PREKVQIATKFGVVGLRDNGVIVKG 90 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~Dt----------A~~Yg~g--~sE~~lG~~L~~~-~R~~~~I~tK~~~~~~~~~~~~~~~ 90 (331)
+.+...+..+.+.+.|+..||- ...||.+ ..-+.+.+.++.. ..-.+-|+-|+.... +.
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~--------~~ 135 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGW--------DD 135 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESEC--------T-
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEeccccc--------cc
Confidence 6788888888888889999993 2344432 1345555555442 111244555553322 11
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCH--HHHHHHHHHHHHcCCcceeecCC-CCHHHHHHHhcCCCceEEe
Q 020083 91 TPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHGVHPITAVQ 167 (331)
Q Consensus 91 s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~--~~~~~~l~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q 167 (331)
+.+...+ +-+.|+..| +|.+.+|.-...+.. ..-|+.+.++++.=.|--||=.+ ++.+++.+.++....+-++
T Consensus 136 ~~~~~~~-~~~~l~~~G---~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvM 211 (309)
T PF01207_consen 136 SPEETIE-FARILEDAG---VSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVM 211 (309)
T ss_dssp -CHHHHH-HHHHHHHTT-----EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEE
T ss_pred chhHHHH-HHHHhhhcc---cceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEE
Confidence 3333333 444666777 899999986554422 45677777777765554444333 3666776666655555554
Q ss_pred c
Q 020083 168 M 168 (331)
Q Consensus 168 ~ 168 (331)
+
T Consensus 212 i 212 (309)
T PF01207_consen 212 I 212 (309)
T ss_dssp E
T ss_pred E
Confidence 4
No 251
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=23.64 E-value=4.5e+02 Score=22.23 Aligned_cols=100 Identities=20% Similarity=0.139 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHH
Q 020083 23 VSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEAS 102 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 102 (331)
...++..++++.|.+.|+.-+=+.+.+ =+...+.++. ..+.+.+=++.... ..+.+....++++.
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~p~~-----v~~~~~~l~~---~~~~v~~~~~fp~g-------~~~~~~k~~eve~A 78 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVNPCF-----VPLAREALKG---SGVKVCTVIGFPLG-------ATTTEVKVAEAREA 78 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcHHH-----HHHHHHHcCC---CCcEEEEEEecCCC-------CCcHHHHHHHHHHH
Confidence 367889999999999887666544433 2223344432 34666666655432 22556667778887
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc
Q 020083 103 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE 138 (331)
Q Consensus 103 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~ 138 (331)
++ +|.|-+|++.-=..-.....+..++.+.++++.
T Consensus 79 ~~-~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~ 113 (203)
T cd00959 79 IA-DGADEIDMVINIGALKSGDYEAVYEEIAAVVEA 113 (203)
T ss_pred HH-cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHh
Confidence 76 699999998765433333456677777776664
No 252
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=23.62 E-value=5.9e+02 Score=23.56 Aligned_cols=149 Identities=17% Similarity=0.094 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHHHH
Q 020083 26 EDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKR 105 (331)
Q Consensus 26 ~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~ 105 (331)
++..+.+..+.+.|++.|=.-- +.....+.| +++++.-. ++-|.-=.. ..++.+... + +++
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d~~~l-~~vr~~~g-~~~l~lDaN----------~~~~~~~a~--~---~~~ 199 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWDVEPL-KAVRERFP-DIPLMADAN----------SAYTLADIP--L---LKR 199 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHHHHHH-HHHHHHCC-CCeEEEECC----------CCCCHHHHH--H---HHH
Confidence 6677788888899999874321 211223343 34443211 222211111 123555432 2 344
Q ss_pred cCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCC-cceeecCCCCHHHHHHHhcCCCceEEecccccccc-chhhhhHH
Q 020083 106 LDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEEIIP 183 (331)
Q Consensus 106 L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~ 183 (331)
|. ..++.++-.|-+. +.++.+.+++++-. =-+.|=|.++...+..+++...++++|+..+..-. ....++..
T Consensus 200 l~--~~~i~~iEeP~~~----~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~ 273 (354)
T cd03317 200 LD--EYGLLMIEQPLAA----DDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHD 273 (354)
T ss_pred hh--cCCccEEECCCCh----hHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHH
Confidence 42 3466677766542 34566677665533 23556677899999999988888999987665432 12367899
Q ss_pred HHHHhCCeeeecccCC
Q 020083 184 LCRELGIGIVPYSPLG 199 (331)
Q Consensus 184 ~~~~~gi~v~a~spl~ 199 (331)
.|+.+|+.++..+...
T Consensus 274 ~A~~~gi~~~~g~~~e 289 (354)
T cd03317 274 LCQEHGIPVWCGGMLE 289 (354)
T ss_pred HHHHcCCcEEecCccc
Confidence 9999999998754443
No 253
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=23.61 E-value=3.5e+02 Score=24.65 Aligned_cols=105 Identities=16% Similarity=0.154 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHHc---CCCcccEE------EeccCCCCCCHHHHHHHHHHHHHcCCcce----eecCCCCHHHHHH
Q 020083 90 GTPDYVRSCCEASLKRL---DVDYIDLY------YQHRVDTSVPIEETIGEMKKLVEEGKIKY----IGLSEASPDTIRR 156 (331)
Q Consensus 90 ~s~~~i~~~~~~sL~~L---~~d~iDl~------~lH~~~~~~~~~~~~~~l~~l~~~G~ir~----iGvS~~~~~~l~~ 156 (331)
.+++.++......++.+ |+.|+|+. .-+..+....++.+++++.+.+++--|+. .+..+.+...+++
T Consensus 66 ~~~ed~~~~~~~~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~~~~~~~~~ 145 (325)
T cd01320 66 QTEEDFERLAYEYLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRHLSPESAQE 145 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCCCCHHHHHH
Q ss_pred Hhc---------CCCceEEeccccccccchhhhhHHHHHHhCCeeeec
Q 020083 157 AHG---------VHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 195 (331)
Q Consensus 157 ~~~---------~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~ 195 (331)
..+ ...++..-.+... .......+++.|+++|+++..+
T Consensus 146 ~~~~~~~~~~~~vvg~~l~~~~~~~-~~~~~~~~~~~A~~~g~~v~~H 192 (325)
T cd01320 146 TLELALKYRDKGVVGFDLAGDEVGF-PPEKFVRAFQRAREAGLRLTAH 192 (325)
T ss_pred HHHHHHhccCCCEEEeecCCCCCCC-CHHHHHHHHHHHHHCCCceEEe
No 254
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=23.58 E-value=2.9e+02 Score=27.68 Aligned_cols=73 Identities=21% Similarity=0.137 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHcCCcceeecCCCCHHHHHHHhcCCCceEE---eccccccccchhhhhHHHHHHhCCeeeecccC
Q 020083 123 VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAV---QMEWSLWTRDIEEEIIPLCRELGIGIVPYSPL 198 (331)
Q Consensus 123 ~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~---q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl 198 (331)
.+.+++.+.+.+.++..+|+.+|+-.+....+..+++...+.++ |.-+++-.. -.-++..-..|.-+..-+|+
T Consensus 410 id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~---~k~~e~~~~~g~i~~~dnp~ 485 (546)
T COG4626 410 IDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGA---IKTIERKLAEGVLVHGDNPL 485 (546)
T ss_pred cCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCch---hHHHHHHHhcCcEEECCCcH
Confidence 34578999999999999999999999999888888777655444 443333222 23344444455555554444
No 255
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=23.50 E-value=2.7e+02 Score=25.95 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=65.1
Q ss_pred HhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCC
Q 020083 61 AFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK 140 (331)
Q Consensus 61 ~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ 140 (331)
.|....|+++=++|+++...-.-|-+.-..+ ..+.+.+-+.+++.| -+..+|.. +.++.....++.+..|+
T Consensus 16 ~lp~~s~~dvdlst~~~~~~l~~P~~inAM~-t~iN~~LA~~a~~~G----~~~~~~k~----~~e~~~~~~r~~~~~~l 86 (326)
T PRK05458 16 KCIVNSRSECDTSVTLGPRTFKLPVVPANMQ-TIIDEKIAEWLAENG----YFYIMHRF----DPEARIPFIKDMHEQGL 86 (326)
T ss_pred CCCCCCHHHcccceEECCcEecCcEEEeccc-chhHHHHHHHHHHcC----CEEEEecC----CHHHHHHHHHhcccccc
Confidence 3444478889999998633222111111122 278888888888886 35568883 23444444455556677
Q ss_pred cceeecCCC--CHHHHHHHhcCC-CceEEeccccccccchhhhhHHHHHHh--CCeeee
Q 020083 141 IKYIGLSEA--SPDTIRRAHGVH-PITAVQMEWSLWTRDIEEEIIPLCREL--GIGIVP 194 (331)
Q Consensus 141 ir~iGvS~~--~~~~l~~~~~~~-~~~~~q~~~n~~~~~~~~~l~~~~~~~--gi~v~a 194 (331)
+-.++++.- ..+.+.++.+.. ..+++++...--+-..-.++++..+++ ++.|++
T Consensus 87 ~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~ 145 (326)
T PRK05458 87 IASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIA 145 (326)
T ss_pred EEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEE
Confidence 655555441 223344444432 246777744432222223445555443 355555
No 256
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=23.32 E-value=6.6e+02 Score=24.73 Aligned_cols=125 Identities=13% Similarity=0.023 Sum_probs=71.6
Q ss_pred CcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCHHHHHHHhcCCCceEEecccccccc--------c----
Q 020083 109 DYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR--------D---- 176 (331)
Q Consensus 109 d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~--------~---- 176 (331)
...|+++.--|+...-...++..+..+...+.|-.-..|..+...+.+......-.++-.++|+... .
T Consensus 79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~ 158 (495)
T PRK07531 79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTS 158 (495)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCC
Confidence 3468888877766443455677777777777665555555667777665544333444455554321 1
Q ss_pred --hhhhhHHHHHHhCCeeeecccCCccccCCCCccCCCCCCcccccCcCCCCcchhhHHHH-HHHHHHHHHHcCCCHHHH
Q 020083 177 --IEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNI-YFRIENLAKKYKCTSAQL 253 (331)
Q Consensus 177 --~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ia~~~g~s~~ql 253 (331)
....+.++++..|...+.......|++. ++.+.. +.+.-.++++.++++.++
T Consensus 159 ~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~-------------------------nrl~~a~~~EA~~L~~~g~~s~~~i 213 (495)
T PRK07531 159 PETIRRAKEILREIGMKPVHIAKEIDAFVG-------------------------DRLLEALWREALWLVKDGIATTEEI 213 (495)
T ss_pred HHHHHHHHHHHHHcCCEEEeecCCCcchhH-------------------------HHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 1134556666666555544333333322 233333 366777888889998887
Q ss_pred HHHHH
Q 020083 254 ALAWV 258 (331)
Q Consensus 254 al~~~ 258 (331)
--...
T Consensus 214 d~~~~ 218 (495)
T PRK07531 214 DDVIR 218 (495)
T ss_pred HHHHh
Confidence 54443
No 257
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=23.29 E-value=5.5e+02 Score=23.06 Aligned_cols=23 Identities=9% Similarity=-0.009 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEe
Q 020083 22 PVSEEDGISMIKHAFSKGITFFD 44 (331)
Q Consensus 22 ~~~~~~~~~~l~~A~~~Gin~~D 44 (331)
.+|.+...+.++..++.|++-+=
T Consensus 18 ~iD~~~l~~~i~~l~~~Gv~gi~ 40 (292)
T PRK03170 18 SVDFAALRKLVDYLIANGTDGLV 40 (292)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEE
Confidence 36888899999999999998764
No 258
>PF13518 HTH_28: Helix-turn-helix domain
Probab=23.22 E-value=97 Score=19.39 Aligned_cols=22 Identities=9% Similarity=0.516 Sum_probs=17.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHc
Q 020083 238 RIENLAKKYKCTSAQLALAWVLG 260 (331)
Q Consensus 238 ~l~~ia~~~g~s~~qlal~~~l~ 260 (331)
.+.++|+++|+|..++ .+|+-.
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~~ 35 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIKR 35 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHHH
Confidence 4678899999988775 777753
No 259
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=23.17 E-value=4.1e+02 Score=25.35 Aligned_cols=75 Identities=12% Similarity=0.086 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHcCCcceeecCCCCHHHHHHHhcC-CCceEEeccccccccch-hhhhHHHHHHhCCeeeecccCCcc
Q 020083 127 ETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV-HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRG 201 (331)
Q Consensus 127 ~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G 201 (331)
.++..++.+.+.+.++.+-+...+.+.+++.+.. ..+.++..+-|+.-+-. ..++.+.|+++|+.++.=.+.+.+
T Consensus 111 ~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~ 187 (405)
T PRK08776 111 GSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSP 187 (405)
T ss_pred HHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCccc
Confidence 4444555544445455555554567777776642 33445555656643322 267899999999998876666544
No 260
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=23.11 E-value=5.7e+02 Score=23.21 Aligned_cols=99 Identities=12% Similarity=0.189 Sum_probs=58.6
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEe-ccCCCC-CC----HHHHHHHHHHHHHcCCcceeecCCCCHHHHHHHhcCCCce
Q 020083 91 TPDYVRSCCEASLKRLDVDYIDLYYQ-HRVDTS-VP----IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPIT 164 (331)
Q Consensus 91 s~~~i~~~~~~sL~~L~~d~iDl~~l-H~~~~~-~~----~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~ 164 (331)
+.+.+.+..++.+ .-|.|-||+--- .+|... .+ ++.+...++.+++.-.+ -|.|-++.++.++++++.. .+
T Consensus 36 ~~~~a~~~a~~~~-~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~-~ISIDT~~~~va~~AL~~G-ad 112 (282)
T PRK11613 36 SLIDAVKHANLMI-NAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV-WISVDTSKPEVIRESAKAG-AH 112 (282)
T ss_pred CHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEECCCHHHHHHHHHcC-CC
Confidence 5555555555443 447777777532 234332 11 22356677777754222 3788899999999998763 33
Q ss_pred EEeccccccccchhhhhHHHHHHhCCeeeecc
Q 020083 165 AVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 196 (331)
Q Consensus 165 ~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~s 196 (331)
++ ...+-+. +.++++.++++|.+++.+.
T Consensus 113 iI-NDI~g~~---d~~~~~~~a~~~~~vVlmh 140 (282)
T PRK11613 113 II-NDIRSLS---EPGALEAAAETGLPVCLMH 140 (282)
T ss_pred EE-EECCCCC---CHHHHHHHHHcCCCEEEEc
Confidence 32 1111121 2467788899999998874
No 261
>PLN02428 lipoic acid synthase
Probab=23.06 E-value=6.1e+02 Score=23.86 Aligned_cols=157 Identities=15% Similarity=0.283 Sum_probs=83.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCc----cCcCCChHHHHHHHHhhcCC--CCcEEEEeeecccCCCCCCcccCCChHHH-
Q 020083 23 VSEEDGISMIKHAFSKGITFFDTA----DVYGQNANETLLGKAFKMLP--REKVQIATKFGVVGLRDNGVIVKGTPDYV- 95 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gin~~DtA----~~Yg~g~sE~~lG~~L~~~~--R~~~~I~tK~~~~~~~~~~~~~~~s~~~i- 95 (331)
.+.++..++.+.+.+.|++++=.. +.|.++..+ .+.+.++... -..+.|..= +++.+
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~-~~~elir~Ir~~~P~i~Ie~L---------------~pdf~~ 193 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSG-HFAETVRRLKQLKPEILVEAL---------------VPDFRG 193 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHH-HHHHHHHHHHHhCCCcEEEEe---------------CccccC
Confidence 456677788888889998876322 123333233 3333343321 112322221 11111
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCCC-----------CCCHHHHHHHHHHHHHc--CCcce----eecCCCCHHHHHHHh
Q 020083 96 RSCCEASLKRLDVDYIDLYYQHRVDT-----------SVPIEETIGEMKKLVEE--GKIKY----IGLSEASPDTIRRAH 158 (331)
Q Consensus 96 ~~~~~~sL~~L~~d~iDl~~lH~~~~-----------~~~~~~~~~~l~~l~~~--G~ir~----iGvS~~~~~~l~~~~ 158 (331)
. ++.|++|.---+|.+ -|+++. ....++.++.++.+++. |..-. +|+ .-+.+++.+.+
T Consensus 194 d---~elL~~L~eAG~d~i-~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l 268 (349)
T PLN02428 194 D---LGAVETVATSGLDVF-AHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTM 268 (349)
T ss_pred C---HHHHHHHHHcCCCEE-ccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHH
Confidence 1 233333333336663 366643 23467889999999988 76642 366 34555554443
Q ss_pred ---cCCCceEEec-cc----------ccc-ccchhhhhHHHHHHhCCeeeecccCCc
Q 020083 159 ---GVHPITAVQM-EW----------SLW-TRDIEEEIIPLCRELGIGIVPYSPLGR 200 (331)
Q Consensus 159 ---~~~~~~~~q~-~~----------n~~-~~~~~~~l~~~~~~~gi~v~a~spl~~ 200 (331)
....++++.+ +| +-+ .+.....+-+.+.+.|...++.+||.+
T Consensus 269 ~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 269 EDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 3344444433 22 111 112236788889999999999999875
No 262
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=23.03 E-value=2.5e+02 Score=29.11 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=32.6
Q ss_pred HHHHHcCCC-HHHHHHHHHHcCCC-CeEeecCCCCHHHHHHHHhcc-----CCCCCHHHHHHHHhhC
Q 020083 241 NLAKKYKCT-SAQLALAWVLGQGD-DVVPIPGTTKIKNLDDNIDSL-----RIKLTKEDLKEISDAV 300 (331)
Q Consensus 241 ~ia~~~g~s-~~qlal~~~l~~~~-v~~vi~G~~~~~~l~enl~a~-----~~~L~~~~~~~i~~~~ 300 (331)
.++++ +-+ -..+.=.|++.+|. ++..+-+...-.+..+..++. ...|+++|+++|.+.-
T Consensus 464 ~l~ek-~~~lfq~lIkkYilnn~h~~t~smqpd~e~~~~~~~eE~tkL~ek~~alteeD~~ei~k~~ 529 (998)
T KOG2019|consen 464 RLAEK-SKKLFQPLIKKYILNNPHCFTFSMQPDPEFAEKLEQEEATKLEEKKAALTEEDLAEIAKAG 529 (998)
T ss_pred HHhhh-chhHHHHHHHHHHhcCCceEEEEecCCchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 34444 444 45566679998883 333333333333332322222 2369999999998763
No 263
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=23.01 E-value=74 Score=20.18 Aligned_cols=42 Identities=14% Similarity=0.246 Sum_probs=28.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCCeEeecCCCCHHHHHHHHhccCC
Q 020083 239 IENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRI 286 (331)
Q Consensus 239 l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~ 286 (331)
|++||+..|+|++-+. .+|+.+ .-++..+.+++.+.++.+++
T Consensus 2 i~dIA~~agvS~~TVS--r~ln~~----~~vs~~tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVS--RVLNGP----PRVSEETRERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHHH--HHHTTC----SSSTHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHHH--HHHhCC----CCCCHHHHHHHHHHHHHHCC
Confidence 6789999999998765 445544 23455677777777666554
No 264
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=22.93 E-value=85 Score=24.95 Aligned_cols=19 Identities=11% Similarity=0.174 Sum_probs=15.6
Q ss_pred HHHHHHHHHHcCCCeEeCc
Q 020083 28 GISMIKHAFSKGITFFDTA 46 (331)
Q Consensus 28 ~~~~l~~A~~~Gin~~DtA 46 (331)
....+..+++.|+++||.=
T Consensus 30 q~~~i~~qL~~GvR~~dir 48 (135)
T smart00148 30 SVEGYIQALDHGCRCVELD 48 (135)
T ss_pred cHHHHHHHHHhCCCEEEEE
Confidence 3568889999999999843
No 265
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=22.78 E-value=5.4e+02 Score=22.83 Aligned_cols=101 Identities=9% Similarity=0.073 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCccCcC----CChHH--HHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHH
Q 020083 22 PVSEEDGISMIKHAFSKGITFFDTADVYG----QNANE--TLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYV 95 (331)
Q Consensus 22 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg----~g~sE--~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i 95 (331)
.+|.+...+.++..++.|++-+=....-| ....| +++-.+.+. -.+++-|..-++.. +.+..
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~-~~~~~~vi~gv~~~-----------~~~~~ 81 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEA-VAGRVPVIAGVGAN-----------STREA 81 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHH-hCCCCeEEEecCCc-----------cHHHH
Confidence 36889999999999999999886444433 32333 444444443 22344444444432 22222
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCCCCC-CHHHHHHHHHHHHHc
Q 020083 96 RSCCEASLKRLDVDYIDLYYQHRVDTSV-PIEETIGEMKKLVEE 138 (331)
Q Consensus 96 ~~~~~~sL~~L~~d~iDl~~lH~~~~~~-~~~~~~~~l~~l~~~ 138 (331)
.+..+ ..+.+| +|-+++.-|.... .-+++++.+.++.+.
T Consensus 82 i~~a~-~a~~~G---ad~v~v~pP~y~~~~~~~~~~~~~~ia~~ 121 (281)
T cd00408 82 IELAR-HAEEAG---ADGVLVVPPYYNKPSQEGIVAHFKAVADA 121 (281)
T ss_pred HHHHH-HHHHcC---CCEEEECCCcCCCCCHHHHHHHHHHHHhc
Confidence 22111 224555 4555555553322 235555666655554
No 266
>PRK10200 putative racemase; Provisional
Probab=22.76 E-value=3.9e+02 Score=23.29 Aligned_cols=63 Identities=21% Similarity=0.074 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEeccCCC------------CCCHHHHHHHHHHHHHcCCcceeecCCCCHHHH
Q 020083 91 TPDYVRSCCEASLKRLDVDYIDLYYQHRVDT------------SVPIEETIGEMKKLVEEGKIKYIGLSEASPDTI 154 (331)
Q Consensus 91 s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~------------~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l 154 (331)
+.+..++-++..-.+.+-++++.+.+|.++- ..+.+...+.++.|.+.| +..|.+...++...
T Consensus 15 T~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~~ 89 (230)
T PRK10200 15 TIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHKV 89 (230)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHHH
Confidence 6677777777877888889999999999842 123455677788888887 68888876555443
No 267
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=22.68 E-value=3.5e+02 Score=23.94 Aligned_cols=17 Identities=35% Similarity=0.774 Sum_probs=12.4
Q ss_pred hhhHHHHHHhCCeeeec
Q 020083 179 EEIIPLCRELGIGIVPY 195 (331)
Q Consensus 179 ~~l~~~~~~~gi~v~a~ 195 (331)
+..+++|++.|+..+..
T Consensus 88 ~~~i~~A~~lG~~~v~~ 104 (279)
T cd00019 88 KDEIERCEELGIRLLVF 104 (279)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 56777788888877654
No 268
>PRK06740 histidinol-phosphatase; Validated
Probab=22.66 E-value=3.2e+02 Score=25.34 Aligned_cols=23 Identities=22% Similarity=0.095 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCCCeEeCccC
Q 020083 26 EDGISMIKHAFSKGITFFDTADV 48 (331)
Q Consensus 26 ~~~~~~l~~A~~~Gin~~DtA~~ 48 (331)
....+.|++|++.|+..+=-++|
T Consensus 61 ~~~e~yv~~Ai~~G~~~ig~SdH 83 (331)
T PRK06740 61 KWIDLYLEEALRKGIKEVGIVDH 83 (331)
T ss_pred chHHHHHHHHHHCCCcEEEECCC
Confidence 44789999999999998855554
No 269
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=22.63 E-value=82 Score=20.05 Aligned_cols=22 Identities=23% Similarity=0.007 Sum_probs=14.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHH
Q 020083 237 FRIENLAKKYKCTSAQLALAWV 258 (331)
Q Consensus 237 ~~l~~ia~~~g~s~~qlal~~~ 258 (331)
+.+.++.++.|+|..++|-..-
T Consensus 5 ~~l~~~r~~~gltq~~lA~~~g 26 (58)
T TIGR03070 5 MLVRARRKALGLTQADLADLAG 26 (58)
T ss_pred HHHHHHHHHcCCCHHHHHHHhC
Confidence 4566667777888777775543
No 270
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=22.57 E-value=6.2e+02 Score=23.43 Aligned_cols=103 Identities=17% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHc-CCCeEeCccCcCCChHHHHHHHHhhcC----CCCcEEEEeeecccCCCCCCcccCCChHHHHHHH
Q 020083 25 EEDGISMIKHAFSK-GITFFDTADVYGQNANETLLGKAFKML----PREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCC 99 (331)
Q Consensus 25 ~~~~~~~l~~A~~~-Gin~~DtA~~Yg~g~sE~~lG~~L~~~----~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~ 99 (331)
.++..++++...++ |++-+--+..=..-.+...+.+.++.. .-+.+-|.|+.... .+..|...+
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~-----------~P~rit~el 212 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILISGGDPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVV-----------IPQRITDEL 212 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEEECCccccCCHHHHHHHHHHHHhcCCccEEEeecCCCcc-----------CchhcCHHH
Q ss_pred HHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCC
Q 020083 100 EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK 140 (331)
Q Consensus 100 ~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ 140 (331)
-+.|+..+...+.+...-.+.... +++.++++.|++.|.
T Consensus 213 ~~~L~~~~~~~~~vsh~nh~~Ei~--~~~~~ai~~L~~aGi 251 (331)
T TIGR00238 213 CELLASFELQLMLVTHINHCNEIT--EEFAEAMKKLRTVNV 251 (331)
T ss_pred HHHHHhcCCcEEEEccCCChHhCC--HHHHHHHHHHHHcCC
No 271
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=22.52 E-value=4.3e+02 Score=21.50 Aligned_cols=99 Identities=18% Similarity=0.126 Sum_probs=69.1
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCc-ceeecCCCCHHHHHHHhcCCCceEEe
Q 020083 89 KGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI-KYIGLSEASPDTIRRAHGVHPITAVQ 167 (331)
Q Consensus 89 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q 167 (331)
|..--.+++.+.+-|+..|-+.+|+=. +..+...+..+....+.+.+.+|.. +.|-++....-..-.+.+...+-+.+
T Consensus 8 DhaG~~lK~~l~~~L~~~g~eV~D~G~-~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~siaANK~~GIRAA~ 86 (148)
T PRK05571 8 DHAGFELKEEIIEHLEELGHEVIDLGP-DSYDASVDYPDYAKKVAEAVVAGEADRGILICGTGIGMSIAANKVKGIRAAL 86 (148)
T ss_pred CCchHHHHHHHHHHHHHCCCEEEEcCC-CCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHhcCCCeEEEE
Confidence 345567899999999999988888642 3333235678888888888999977 88888988877766666666665544
Q ss_pred ccccccccchhhhhHHHHHHh-CCeeeecc
Q 020083 168 MEWSLWTRDIEEEIIPLCREL-GIGIVPYS 196 (331)
Q Consensus 168 ~~~n~~~~~~~~~l~~~~~~~-gi~v~a~s 196 (331)
+. +......+++| +..|++++
T Consensus 87 ~~--------d~~~A~~ar~hNnaNVL~lG 108 (148)
T PRK05571 87 CH--------DTYSAHLAREHNNANVLALG 108 (148)
T ss_pred EC--------CHHHHHHHHHhcCCcEEEEC
Confidence 42 12334455544 57788763
No 272
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=22.29 E-value=2e+02 Score=27.19 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=14.6
Q ss_pred hhhHHHHHHhCCeeeec
Q 020083 179 EEIIPLCRELGIGIVPY 195 (331)
Q Consensus 179 ~~l~~~~~~~gi~v~a~ 195 (331)
+.+++.|+++||.|+.-
T Consensus 61 ~~~L~~~~~~gIkvI~N 77 (362)
T PF07287_consen 61 RPLLPAAAEKGIKVITN 77 (362)
T ss_pred HHHHHHHHhCCCCEEEe
Confidence 67899999999999874
No 273
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=22.27 E-value=2.3e+02 Score=21.53 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=28.6
Q ss_pred CCCHHHHHHHhcCCCceEEeccccccccchhhhhHHHHHHhCCeeeeccc
Q 020083 148 EASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSP 197 (331)
Q Consensus 148 ~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~sp 197 (331)
.-+.+++..+....+++++-+.-.--.+....++.++++++||++-.+..
T Consensus 38 ~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T 87 (109)
T cd00248 38 DLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMST 87 (109)
T ss_pred cCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCc
Confidence 34556665555433344443322221122336788999999999988754
No 274
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=22.23 E-value=2.5e+02 Score=24.82 Aligned_cols=97 Identities=16% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHH--------cCCcceeecCCCCHHHHHHHhcCCCceEEec
Q 020083 97 SCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVE--------EGKIKYIGLSEASPDTIRRAHGVHPITAVQM 168 (331)
Q Consensus 97 ~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~--------~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~ 168 (331)
+.++..|+.+| +|||.+=+-|-......++.++..-++.+ =|..-.+-++.-..++..+..+...|+++.+
T Consensus 12 ~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEi 90 (237)
T TIGR03849 12 KFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPGGTLFEIAHSKGKFDEYLNECDELGFEAVEI 90 (237)
T ss_pred HHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEE
Q ss_pred cccccccchh--hhhHHHHHHhCCeeee
Q 020083 169 EWSLWTRDIE--EEIIPLCRELGIGIVP 194 (331)
Q Consensus 169 ~~n~~~~~~~--~~l~~~~~~~gi~v~a 194 (331)
.-..+.-..+ ..+++.++++|..+..
T Consensus 91 S~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 91 SDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred cCCccCCCHHHHHHHHHHHHhCCCeEec
No 275
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.23 E-value=6.6e+02 Score=23.59 Aligned_cols=88 Identities=13% Similarity=0.026 Sum_probs=55.1
Q ss_pred EEEeccCCCC-----------CCHHHHHHHHHHHHHcCC----cceeecC--CCCHHH---HHHHhcCCCceEEeccccc
Q 020083 113 LYYQHRVDTS-----------VPIEETIGEMKKLVEEGK----IKYIGLS--EASPDT---IRRAHGVHPITAVQMEWSL 172 (331)
Q Consensus 113 l~~lH~~~~~-----------~~~~~~~~~l~~l~~~G~----ir~iGvS--~~~~~~---l~~~~~~~~~~~~q~~~n~ 172 (331)
.+-||.|+.. -++++++++++++.++.. +-|+=+. |.+.++ +.++++..+..++-++||+
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np 289 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHA 289 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCC
Confidence 5788988642 257889999988654431 1222222 445544 4445555667888999997
Q ss_pred cccc----h-h---hhhHHHHHHhCCeeeecccCCc
Q 020083 173 WTRD----I-E---EEIIPLCRELGIGIVPYSPLGR 200 (331)
Q Consensus 173 ~~~~----~-~---~~l~~~~~~~gi~v~a~spl~~ 200 (331)
.... + . ....+..+++|+.+......+.
T Consensus 290 ~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~ 325 (345)
T PRK14466 290 IPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGE 325 (345)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 5331 1 1 3556667789999988777654
No 276
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=22.20 E-value=5.1e+02 Score=22.32 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHHc-----CCCeEeCccCcCCChHHHHHHHHhhcC-CCCcEEEEeeec
Q 020083 23 VSEEDGISMIKHAFSK-----GITFFDTADVYGQNANETLLGKAFKML-PREKVQIATKFG 77 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~-----Gin~~DtA~~Yg~g~sE~~lG~~L~~~-~R~~~~I~tK~~ 77 (331)
.+.++....++.|++. |+|--=.+..-. ++..+...++.. .|.-+||=|+..
T Consensus 71 ~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~---~~~~m~~vl~~l~~~gl~FvDS~T~ 128 (213)
T PF04748_consen 71 MSEEEIRKRLEAALARVPGAVGVNNHMGSRFTS---DREAMRWVLEVLKERGLFFVDSRTT 128 (213)
T ss_dssp S-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC----HHHHHHHHHHHHHTT-EEEE-S--
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecCCCccccC---CHHHHHHHHHHHHHcCCEEEeCCCC
Confidence 4788999999999987 544333222222 677777777654 567777856553
No 277
>COG2052 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.11 E-value=63 Score=22.94 Aligned_cols=47 Identities=26% Similarity=0.447 Sum_probs=31.6
Q ss_pred CCccccccccccccCCCCCCCCCCHH--HHHHHHHHHHHcCCCeEeCccCcC
Q 020083 1 MVLQVSKLGLGCMNLSSGYSSPVSEE--DGISMIKHAFSKGITFFDTADVYG 50 (331)
Q Consensus 1 ~~~~vs~lglG~~~~~~~~~~~~~~~--~~~~~l~~A~~~Gin~~DtA~~Yg 50 (331)
|.+++-.||||-.--+...-.-++++ -.++++..|-+.|- ++|.. ||
T Consensus 1 m~i~LINIGFGNivsanRviaIVsPESaPiKRii~eArdr~~-LIDAT--YG 49 (89)
T COG2052 1 MEIKLINIGFGNIVSANRVIAIVSPESAPIKRIIQEARDRGM-LIDAT--YG 49 (89)
T ss_pred CceEEEEeccccEeecceEEEEECCCcccHHHHHHHHHhcCc-EEEcc--cC
Confidence 55667778998765544221112333 35899999999997 89965 87
No 278
>PRK12569 hypothetical protein; Provisional
Probab=21.96 E-value=2.1e+02 Score=25.45 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=50.1
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCCCC-CCcc
Q 020083 9 GLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRD-NGVI 87 (331)
Q Consensus 9 glG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~-~~~~ 87 (331)
+||.|.+|. . -.++..++|..|- |=|.-|.| ....+-+.++-.....|-|-..-++.+..+ ++..
T Consensus 14 sfG~~~~g~----~-~D~~lmp~ItsaN------IACG~HAG---Dp~~M~~tv~lA~~~~V~IGAHPsyPD~~gFGRr~ 79 (245)
T PRK12569 14 GFGPWRIGD----G-VDEALMPLISSAN------IATGFHAG---DPNIMRRTVELAKAHGVGIGAHPGFRDLVGFGRRH 79 (245)
T ss_pred CCCCcCCCC----c-cHHHHHHHhhhHH------HhccccCC---CHHHHHHHHHHHHHcCCEeccCCCCCcCCCCCCCC
Confidence 578877642 0 1566677777763 12333666 477777777654555566655554443322 2334
Q ss_pred cCCChHHHHHHHHHHHHHc
Q 020083 88 VKGTPDYVRSCCEASLKRL 106 (331)
Q Consensus 88 ~~~s~~~i~~~~~~sL~~L 106 (331)
...++++++.++...+..|
T Consensus 80 m~~s~~el~~~v~yQigaL 98 (245)
T PRK12569 80 INASPQELVNDVLYQLGAL 98 (245)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 5788999888877666655
No 279
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=21.87 E-value=5.1e+02 Score=25.62 Aligned_cols=125 Identities=16% Similarity=0.199 Sum_probs=68.1
Q ss_pred HHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHHHHcCCCcccEEEeccCC-CCCCHHHHHHHHH
Q 020083 55 ETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVD-TSVPIEETIGEMK 133 (331)
Q Consensus 55 E~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~-~~~~~~~~~~~l~ 133 (331)
-+-||.+|+. +.+++|+-.+... ++.-..+..-+.+-+++-++..=-+. |.--. ...+.......+.
T Consensus 341 ~~dlG~~L~~--~~~l~VsINl~a~---------Dl~s~rli~~~~~~l~~~~v~pqQI~-lElTER~f~D~~~~~~iI~ 408 (524)
T COG4943 341 FRDLGDLLRQ--HRDLHVSINLSAS---------DLASPRLIDRLNRKLAQYQVRPQQIA-LELTERTFADPKKMTPIIL 408 (524)
T ss_pred HHHhHHHHHh--CcceEEEEeeeeh---------hhcCchHHHHHHHHHHhcCcChHHhe-eehhhhhhcCchhhhHHHH
Confidence 3567888874 4567888777544 33444566667766666664321111 10000 1123456677888
Q ss_pred HHHHcCCccee---ecCCCCHHHHHHHhcCCCceEEec--------cccccccchhhhhHHHHHHhCCeeeec
Q 020083 134 KLVEEGKIKYI---GLSEASPDTIRRAHGVHPITAVQM--------EWSLWTRDIEEEIIPLCRELGIGIVPY 195 (331)
Q Consensus 134 ~l~~~G~ir~i---GvS~~~~~~l~~~~~~~~~~~~q~--------~~n~~~~~~~~~l~~~~~~~gi~v~a~ 195 (331)
.+++.|.--+| |..--+...+.. -++|++-+ .++........-+++.|+.+|+.+++=
T Consensus 409 r~ReaG~~IyIDDFGTGYSnL~YLq~----L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaE 477 (524)
T COG4943 409 RLREAGHEIYIDDFGTGYSNLHYLQS----LPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAE 477 (524)
T ss_pred HHHhcCCeEEEccCcCcchhHHHHhh----CCccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEee
Confidence 99999985555 221111222322 22333322 333323333467999999999999873
No 280
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=21.75 E-value=6.6e+02 Score=23.39 Aligned_cols=150 Identities=7% Similarity=0.025 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCC--hHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHH
Q 020083 24 SEEDGISMIKHAFSKGITFFDTADVYGQN--ANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEA 101 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g--~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~ 101 (331)
+.++..+-+..+.+.|++.|=.-- |.. +..+.+ +++++.-.+++.|.-=. . ..++.+...+-+ +
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikv--g~~~~~d~~~v-~~vRe~~G~~~~l~vDa--N--------~~~~~~~A~~~~-~ 203 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKI--GRDPRRDPDRV-AAARRAIGPDAELFVDA--N--------GAYSRKQALALA-R 203 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeec--CCCHHHHHHHH-HHHHHHcCCCCeEEEEC--C--------CCCCHHHHHHHH-H
Confidence 445566667777789999875321 211 112222 34443222222222111 1 023444433222 2
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc--CCc-ceeecCCCCHHHHHHHhcCCCceEEecccccccc-ch
Q 020083 102 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GKI-KYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DI 177 (331)
Q Consensus 102 sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~--G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~ 177 (331)
.|+. +++.++-.|-+ .+.++.+.+|+++ -.| -..|=|.++...+.++++..-++++|+...-.-- ..
T Consensus 204 ~l~~-----~~~~~~EeP~~----~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit~ 274 (352)
T cd03328 204 AFAD-----EGVTWFEEPVS----SDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTG 274 (352)
T ss_pred HHHH-----hCcchhhCCCC----hhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHHH
Confidence 2333 35555665543 2446777778776 222 2445567889999999988889999998765421 12
Q ss_pred hhhhHHHHHHhCCeeeecc
Q 020083 178 EEEIIPLCRELGIGIVPYS 196 (331)
Q Consensus 178 ~~~l~~~~~~~gi~v~a~s 196 (331)
..++.+.|+.+|+.++.+.
T Consensus 275 ~~~ia~~A~a~gi~~~~h~ 293 (352)
T cd03328 275 FLQAAALAAAHHVDLSAHC 293 (352)
T ss_pred HHHHHHHHHHcCCeeccCc
Confidence 3689999999999998753
No 281
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=21.56 E-value=5.8e+02 Score=22.72 Aligned_cols=28 Identities=11% Similarity=0.048 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCccCc
Q 020083 22 PVSEEDGISMIKHAFSKGITFFDTADVY 49 (331)
Q Consensus 22 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Y 49 (331)
.+|.+...+.++..++.|++-+=.....
T Consensus 17 ~iD~~~~~~~i~~l~~~Gv~gl~v~Gst 44 (284)
T cd00950 17 SVDFDALERLIEFQIENGTDGLVVCGTT 44 (284)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 3688999999999999999987644333
No 282
>PRK15108 biotin synthase; Provisional
Probab=21.12 E-value=6.8e+02 Score=23.33 Aligned_cols=106 Identities=9% Similarity=-0.007 Sum_probs=58.8
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEeccCCC-CCCHHHHHHHHHHHHHcCCcceeecCC--CCHHHHHHHhcCC-----
Q 020083 90 GTPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSE--ASPDTIRRAHGVH----- 161 (331)
Q Consensus 90 ~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvS~--~~~~~l~~~~~~~----- 161 (331)
.++++|.+.++. ...+|++.+- ....+.++ ...++.+.+.++.+++.|. .+.+|+ .+.+.++++.+..
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i~-i~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeAGld~~n 151 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRFC-MGAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANAGLDYYN 151 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEE-EEecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 689999988875 5678998883 33333232 3346677777777777664 343444 5667776664431
Q ss_pred -CceEEecccccc-cc-c--hhhhhHHHHHHhCCeeeecccCC
Q 020083 162 -PITAVQMEWSLW-TR-D--IEEEIIPLCRELGIGIVPYSPLG 199 (331)
Q Consensus 162 -~~~~~q~~~n~~-~~-~--~~~~l~~~~~~~gi~v~a~spl~ 199 (331)
.++...--|.-+ .. . ...+.++.+++.|+.+-+--.++
T Consensus 152 ~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~G 194 (345)
T PRK15108 152 HNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVG 194 (345)
T ss_pred eccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEe
Confidence 111111111111 11 1 12467888888888665433333
No 283
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=21.10 E-value=6.9e+02 Score=24.64 Aligned_cols=108 Identities=11% Similarity=0.088 Sum_probs=58.7
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeccC--C-CCCCH----HHHHHHHHHHHH-cCCcc--eeecCCCCHHHHHHHh
Q 020083 89 KGTPDYVRSCCEASLKRLDVDYIDLYYQHRV--D-TSVPI----EETIGEMKKLVE-EGKIK--YIGLSEASPDTIRRAH 158 (331)
Q Consensus 89 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~--~-~~~~~----~~~~~~l~~l~~-~G~ir--~iGvS~~~~~~l~~~~ 158 (331)
.++++...+.+.+.. .=| +|++==... + +..++ ..+++++++..+ .|+-+ ++-|+.-+.+++.+-.
T Consensus 179 GLsp~~~A~~~y~~~-~GG---vD~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra 254 (475)
T CHL00040 179 GLSAKNYGRAVYECL-RGG---LDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMYKRA 254 (475)
T ss_pred CCCHHHHHHHHHHHH-cCC---CcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeeccCCCCHHHHHHHH
Confidence 567888877776655 223 444211100 0 11233 445666776544 45433 4444433455554322
Q ss_pred c---CCCceEEeccccccccchhhhhHHHHHHhCCeeeecccCCc
Q 020083 159 G---VHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGR 200 (331)
Q Consensus 159 ~---~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~ 200 (331)
+ .....++++.++..--.....+.+.|+..++.++++-.+.+
T Consensus 255 ~~a~e~G~~~~mv~~~~~G~~al~~l~~~~~~~~l~IhaHrA~~g 299 (475)
T CHL00040 255 VFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHA 299 (475)
T ss_pred HHHHHcCCceEEEeccccccchHHHHHHHhhhcCceEEecccccc
Confidence 2 23345566665554333346777788889999999988774
No 284
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=21.09 E-value=2.9e+02 Score=26.31 Aligned_cols=96 Identities=14% Similarity=0.169 Sum_probs=53.9
Q ss_pred HcCCCeEe-----CccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCC-----CCCCcccCCChHHHHHHHHHHHHHc
Q 020083 37 SKGITFFD-----TADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGL-----RDNGVIVKGTPDYVRSCCEASLKRL 106 (331)
Q Consensus 37 ~~Gin~~D-----tA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~-----~~~~~~~~~s~~~i~~~~~~sL~~L 106 (331)
+.++.-|| ++.-+. .++..|.+.++.....=+||-||+...-. .+..+.....-+.|++.+.+.|++-
T Consensus 109 ~~~~~~yD~fiii~s~rf~--~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 109 EVKFYRYDFFIIISSERFT--ENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp HTTGGG-SEEEEEESSS----HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred HccccccCEEEEEeCCCCc--hhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 45666665 233333 58888889888744455689999965211 1111111223456788888999999
Q ss_pred CCCcccEEEeccCCCCC-CHHHHHHHHHH
Q 020083 107 DVDYIDLYYQHRVDTSV-PIEETIGEMKK 134 (331)
Q Consensus 107 ~~d~iDl~~lH~~~~~~-~~~~~~~~l~~ 134 (331)
|+...-++++-+.+... ++....++|+.
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~ 215 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEK 215 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHH
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHH
Confidence 99999999999887653 56566666553
No 285
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=21.07 E-value=5.4e+02 Score=22.19 Aligned_cols=22 Identities=18% Similarity=0.542 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC
Q 020083 24 SEEDGISMIKHAFSKGITFFDT 45 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~Dt 45 (331)
-++.....++.|++.|+.+|.+
T Consensus 13 ~pENTl~Af~~A~~~G~d~iE~ 34 (237)
T cd08583 13 TYTNSLDAFEHNYKKGYRVFEV 34 (237)
T ss_pred CCccHHHHHHHHHHhCCCEEEE
Confidence 3577899999999999998853
No 286
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=20.92 E-value=86 Score=19.31 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=19.3
Q ss_pred cccccccccccCCCCCCCCCCHHHHHHHHHHHHH
Q 020083 4 QVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFS 37 (331)
Q Consensus 4 ~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~ 37 (331)
+++.-||.+.+.|..... ..+++..+-|.+|++
T Consensus 6 Rl~~AgF~~i~~g~g~~~-~~eeEt~qkL~~AF~ 38 (41)
T PF11590_consen 6 RLRSAGFATIGSGAGLPS-SEEEETRQKLRRAFD 38 (41)
T ss_dssp HHHHTT-EEECTTS-------HHHHHHHHHHHHH
T ss_pred HHHHHhHHHhccCccccc-hhhHHHHHHHHHHHH
Confidence 456677877776653332 266778888998876
No 287
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=20.87 E-value=7.5e+02 Score=23.75 Aligned_cols=152 Identities=11% Similarity=0.057 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHH
Q 020083 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASL 103 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 103 (331)
+.++..+.++.+++.|++.|=.--.-......+.+ +++++.-.+++.|.-=.. ..++++...+.+
T Consensus 196 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~d~~~v-~avRe~vG~~~~L~vDaN----------~~w~~~~A~~~~---- 260 (415)
T cd03324 196 SDEKLRRLCKEALAQGFTHFKLKVGADLEDDIRRC-RLAREVIGPDNKLMIDAN----------QRWDVPEAIEWV---- 260 (415)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH-HHHHHhcCCCCeEEEECC----------CCCCHHHHHHHH----
Confidence 44556666777778899887532110100112222 334432122332222211 023554433332
Q ss_pred HHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC----CcceeecCCCCHHHHHHHhcCCCceEEecccccccc-chh
Q 020083 104 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG----KIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIE 178 (331)
Q Consensus 104 ~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G----~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~ 178 (331)
++|. ..++.++-.|-+.. .++.+.+|+++. .=-..|=|.++...++.++....++++|....-.-- ...
T Consensus 261 ~~L~--~~~l~~iEEP~~~~----d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~d~~~~GGit~~ 334 (415)
T cd03324 261 KQLA--EFKPWWIEEPTSPD----DILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLGGVNEN 334 (415)
T ss_pred HHhh--ccCCCEEECCCCCC----cHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHH
Confidence 3342 24666677775443 355566666653 223334466788899999888889999988665432 123
Q ss_pred hhhHHHHHHhCCeeeecc
Q 020083 179 EEIIPLCRELGIGIVPYS 196 (331)
Q Consensus 179 ~~l~~~~~~~gi~v~a~s 196 (331)
.++...|+.+|+.++.++
T Consensus 335 ~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 335 LAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred HHHHHHHHHcCCeEEEcC
Confidence 689999999999997763
No 288
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.82 E-value=1.4e+02 Score=22.66 Aligned_cols=53 Identities=23% Similarity=0.141 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccC
Q 020083 26 EDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVG 80 (331)
Q Consensus 26 ~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~ 80 (331)
.......--.+++|.-|+-|-..|.-| .|..+---|-+ ..++++|++|+.+..
T Consensus 20 a~LYsaYMpfl~nGglFVpTnk~y~iG-~evfl~l~lld-~pekl~vagkVaWit 72 (117)
T COG3215 20 ALLYSAYMPFLENGGLFVPTNKVYSIG-EEVFLLLELLD-FPEKLPVAGKVAWIT 72 (117)
T ss_pred HHHHHHHhHHHhcCcEEcccCCccccc-hhhhhhhhhcC-chhhccccceEEEEc
Confidence 334555555678999999999999765 45555433332 456899999996543
No 289
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=20.73 E-value=1e+02 Score=18.59 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=13.1
Q ss_pred HHHHHHHHHcCCCHHHHH
Q 020083 237 FRIENLAKKYKCTSAQLA 254 (331)
Q Consensus 237 ~~l~~ia~~~g~s~~qla 254 (331)
+.+..||++++++..++.
T Consensus 7 Dtl~~IA~~~~~~~~~l~ 24 (44)
T PF01476_consen 7 DTLWSIAKRYGISVDELM 24 (44)
T ss_dssp --HHHHHHHTTS-HHHHH
T ss_pred CcHHHHHhhhhhhHhHHH
Confidence 478899999999998864
No 290
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=20.64 E-value=4.7e+02 Score=25.07 Aligned_cols=82 Identities=9% Similarity=0.049 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHcCCcceeecCCCCHHHHHHHhc--CCCceEEeccccccccchh-hhhHHHHHHhCCeeeecccCCcc
Q 020083 125 IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHG--VHPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRG 201 (331)
Q Consensus 125 ~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~--~~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G 201 (331)
...+...++.+.++.-|....+.......+.+.+. ...+.++..+-|++.+-.+ ..+.+.|+++|+-++.=+.++.+
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP 191 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP 191 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc
Confidence 46778888888777777777776666655555443 4667788888888876444 67999999999889988888887
Q ss_pred ccCCC
Q 020083 202 FFGGK 206 (331)
Q Consensus 202 ~L~~~ 206 (331)
++...
T Consensus 192 ~~q~P 196 (396)
T COG0626 192 VLQRP 196 (396)
T ss_pred cccCh
Confidence 76544
No 291
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=20.64 E-value=5e+02 Score=21.72 Aligned_cols=84 Identities=15% Similarity=0.118 Sum_probs=52.2
Q ss_pred HHHHcCCCc----ccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCHHHHHHHhcCCCceEEeccccccccch
Q 020083 102 SLKRLDVDY----IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDI 177 (331)
Q Consensus 102 sL~~L~~d~----iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~ 177 (331)
.|++.|+.- +|==++-|-.++. -+++.+.+.+++.+| ++-+=+||.+...++.......++++-----++
T Consensus 22 ~L~~~Gikgvi~DlDNTLv~wd~~~~-tpe~~~W~~e~k~~g-i~v~vvSNn~e~RV~~~~~~l~v~fi~~A~KP~---- 95 (175)
T COG2179 22 ILKAHGIKGVILDLDNTLVPWDNPDA-TPELRAWLAELKEAG-IKVVVVSNNKESRVARAAEKLGVPFIYRAKKPF---- 95 (175)
T ss_pred HHHHcCCcEEEEeccCceecccCCCC-CHHHHHHHHHHHhcC-CEEEEEeCCCHHHHHhhhhhcCCceeecccCcc----
Confidence 455666432 3434444444433 368999999999998 466668999988888777655554442222221
Q ss_pred hhhhHHHHHHhCCe
Q 020083 178 EEEIIPLCRELGIG 191 (331)
Q Consensus 178 ~~~l~~~~~~~gi~ 191 (331)
...+..++++.++.
T Consensus 96 ~~~fr~Al~~m~l~ 109 (175)
T COG2179 96 GRAFRRALKEMNLP 109 (175)
T ss_pred HHHHHHHHHHcCCC
Confidence 24566677777654
No 292
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=20.46 E-value=1.3e+02 Score=27.73 Aligned_cols=107 Identities=14% Similarity=0.224 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHcCCCeEeCccCcCCChHHHHHHHHhhcCCCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHHHH
Q 020083 26 EDGISMIKHAFSKGITFFDTADVYGQNANETLLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKR 105 (331)
Q Consensus 26 ~~~~~~l~~A~~~Gin~~DtA~~Yg~g~sE~~lG~~L~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~ 105 (331)
+.-+++|++.-+.|+ .+|.|.. ||+..=++++- -+.-+|+|..+.+.-.+ .++.-.++..+++. ++
T Consensus 160 ~~G~~vV~~mn~lGm-~vDvSH~-----s~~t~~Dv~~~--s~~PviaSHSn~ral~~---h~RNltDe~iraia---~~ 225 (320)
T PF01244_consen 160 PFGREVVREMNRLGM-LVDVSHL-----SEKTFWDVLEI--SKKPVIASHSNARALCP---HPRNLTDEQIRAIA---ER 225 (320)
T ss_dssp HHHHHHHHHHHHHT--EEE-TTB------HHHHHHHHHH---SSEEEECCEEBTTTS-----TTSB-HHHHHHHH---HT
T ss_pred hHHHHHHHHHHHcCC-eeeeccC-----CHHHHHHHHhh--cCCCEEEeccChHhhCC---CCCCCCHHHHHHHH---HC
Confidence 446899999999999 9999975 89999999974 34578888876653221 11222222222332 22
Q ss_pred cCCCcccEEEeccC-----CCCCCHHHHHHHHHHHHHcCCcceeecCC
Q 020083 106 LDVDYIDLYYQHRV-----DTSVPIEETIGEMKKLVEEGKIKYIGLSE 148 (331)
Q Consensus 106 L~~d~iDl~~lH~~-----~~~~~~~~~~~~l~~l~~~G~ir~iGvS~ 148 (331)
=| .|=+.++... +....+++.++.++.+++.+=+.+||+..
T Consensus 226 GG--viGi~~~~~fl~~~~~~~~~~~~~~~Hi~y~~~l~G~dhVgiGs 271 (320)
T PF01244_consen 226 GG--VIGINFYPAFLGDDWDPRASLDDLVDHIDYIVDLVGIDHVGIGS 271 (320)
T ss_dssp T---EEEEESSHHHHSTTHSSG-BHHHHHHHHHHHHHHH-GGGEEEE-
T ss_pred Cc--EEEEEcchhhhcccccccccHHHHHHHHHHHHHhcCCCeEEECc
Confidence 22 3444433321 13456889999999988887789999854
No 293
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=20.45 E-value=7.7e+02 Score=23.66 Aligned_cols=106 Identities=8% Similarity=0.113 Sum_probs=54.3
Q ss_pred CcCCChHHHHHHHHhhcC----CCCcEEEEeeecccCCCCCCcccCCChHHHHHHHHHHHHHcC-CCcccEEEeccCCCC
Q 020083 48 VYGQNANETLLGKAFKML----PREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLD-VDYIDLYYQHRVDTS 122 (331)
Q Consensus 48 ~Yg~g~sE~~lG~~L~~~----~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~-~d~iDl~~lH~~~~~ 122 (331)
.|| .|+.|-+++++. +.+-++|.|-+....-+ +.+..-+++.-++.. ...+.++.+|.|+..
T Consensus 62 VfG---g~~~L~~~i~~~~~~~~p~~I~V~ttc~~eiIG----------dDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~ 128 (417)
T cd01966 62 ILG---GGENLEEALDTLAERAKPKVIGLLSTGLTETRG----------EDIAGALKQFRAEHPELADVPVVYVSTPDFE 128 (417)
T ss_pred EEC---CHHHHHHHHHHHHHhcCCCEEEEECCCcccccc----------cCHHHHHHHHHhhccccCCCeEEEecCCCCC
Confidence 577 466665666543 45557777777543221 223333333223311 013678889998765
Q ss_pred CC----HHHHHHHHHH-H--------HHcCCcceeecCCCCH---HHHHHHhcCCCceEE
Q 020083 123 VP----IEETIGEMKK-L--------VEEGKIKYIGLSEASP---DTIRRAHGVHPITAV 166 (331)
Q Consensus 123 ~~----~~~~~~~l~~-l--------~~~G~ir~iGvS~~~~---~~l~~~~~~~~~~~~ 166 (331)
.. .+.++++|-+ + +++++|.=||-++.++ +.++++++...+.++
T Consensus 129 g~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~ 188 (417)
T cd01966 129 GSLEDGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPI 188 (417)
T ss_pred CcHHHHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 32 2334444332 2 2356688887554433 455566655555444
No 294
>PRK06256 biotin synthase; Validated
Probab=20.40 E-value=6.7e+02 Score=22.98 Aligned_cols=108 Identities=24% Similarity=0.274 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCC-CeEeCccCcCCChHH-HHHHHHhhcC-CCCcEEEEeeecccCCCCCCcccCCChHHHHHHH
Q 020083 23 VSEEDGISMIKHAFSKGI-TFFDTADVYGQNANE-TLLGKAFKML-PREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCC 99 (331)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gi-n~~DtA~~Yg~g~sE-~~lG~~L~~~-~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~~ 99 (331)
.+.++..+.++.+.+.|+ .++-.+..++....+ +.+-+.++.. .+-.+-+.+-.|.. +++.+.+
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~l-----------~~e~l~~-- 157 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGLL-----------TEEQAER-- 157 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCcC-----------CHHHHHH--
Q ss_pred HHHHHHcCCCcccEE------EeccCCCCCCHHHHHHHHHHHHHcCCcceeec
Q 020083 100 EASLKRLDVDYIDLY------YQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL 146 (331)
Q Consensus 100 ~~sL~~L~~d~iDl~------~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGv 146 (331)
|+..|.+.+-+- .+........+++.+++++.+++.|.--..|+
T Consensus 158 ---LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 158 ---LKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred ---HHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCe
No 295
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=20.17 E-value=4.7e+02 Score=21.15 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc
Q 020083 24 SEEDGISMIKHAFSKGITFFDTA 46 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA 46 (331)
-++.....++.|++.|..+|++-
T Consensus 11 ~pent~~a~~~a~~~g~~~iE~D 33 (189)
T cd08556 11 APENTLAAFRKALEAGADGVELD 33 (189)
T ss_pred CCchHHHHHHHHHHcCCCEEEEE
Confidence 35778999999999999988643
No 296
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=20.09 E-value=6.7e+02 Score=22.89 Aligned_cols=138 Identities=12% Similarity=0.061 Sum_probs=78.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc---------cCcCCC---hHHHHHHHHhhcC-CCCcEEEEeeecccCCCCCCcccCC
Q 020083 24 SEEDGISMIKHAFSKGITFFDTA---------DVYGQN---ANETLLGKAFKML-PREKVQIATKFGVVGLRDNGVIVKG 90 (331)
Q Consensus 24 ~~~~~~~~l~~A~~~Gin~~DtA---------~~Yg~g---~sE~~lG~~L~~~-~R~~~~I~tK~~~~~~~~~~~~~~~ 90 (331)
+.++..+..+.+.+.|+..+|.- ..|++. ...+.+.+.++.. .+-.+-|+.|+......
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~-------- 144 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD-------- 144 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC--------
Confidence 67888888889999999999852 123321 1235555555542 11125577887432111
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCC--HHHHHHHHHHHHHcCCcceeecCCC-CHHHHHHHhcCCCceEEe
Q 020083 91 TPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP--IEETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGVHPITAVQ 167 (331)
Q Consensus 91 s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~--~~~~~~~l~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q 167 (331)
+...+ ..+-+.|+..|+ |.+.+|....... -...|+.+.++++.=.+--||.... +++++.++++....+.+|
T Consensus 145 ~~~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vm 220 (319)
T TIGR00737 145 AHINA-VEAARIAEDAGA---QAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVM 220 (319)
T ss_pred CcchH-HHHHHHHHHhCC---CEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEE
Confidence 11111 234445667774 5556675432211 1234677777777655666666553 677788877666677777
Q ss_pred cccccc
Q 020083 168 MEWSLW 173 (331)
Q Consensus 168 ~~~n~~ 173 (331)
+---++
T Consensus 221 igR~~l 226 (319)
T TIGR00737 221 IGRGAL 226 (319)
T ss_pred EChhhh
Confidence 754443
No 297
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=20.09 E-value=4.7e+02 Score=21.09 Aligned_cols=96 Identities=9% Similarity=0.081 Sum_probs=66.0
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCc-ceeecCCCCHHHHHHHhcCCCceEEe
Q 020083 89 KGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI-KYIGLSEASPDTIRRAHGVHPITAVQ 167 (331)
Q Consensus 89 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q 167 (331)
|..--.+++.+.+-|+..|-+-+|+=- +...+..+....+.+.+.+|.. +.|-++....-.--.+.+...+-+.+
T Consensus 8 DhaG~~lK~~l~~~L~~~G~eV~D~G~----~~~~dYpd~a~~va~~V~~~~~~~GIliCGTGiG~siaANK~~GIRAA~ 83 (142)
T PRK08621 8 DKAGFELKEVVKDYLEDNKYEVVDVTE----EGAEDFVDSTLAVAKEVNKSEDNLGIVIDAYGAGSFMVATKIKGMVAAE 83 (142)
T ss_pred CcchHHHHHHHHHHHHHCCCEEEECCC----CCCCCcHHHHHHHHHHHHcCCCceEEEEcCCChhhhhhhhcCCCeEEEE
Confidence 345567899999999999988888743 3335677888888888888886 78888888776665555556665444
Q ss_pred ccccccccchhhhhHHHHHHh-CCeeeecc
Q 020083 168 MEWSLWTRDIEEEIIPLCREL-GIGIVPYS 196 (331)
Q Consensus 168 ~~~n~~~~~~~~~l~~~~~~~-gi~v~a~s 196 (331)
+. .......+++| +..|++++
T Consensus 84 ~~--------d~~~A~~ar~hNnaNVL~lG 105 (142)
T PRK08621 84 VS--------DERSAYMTRGHNNARMITMG 105 (142)
T ss_pred EC--------CHHHHHHHHHHcCCcEEEEC
Confidence 42 12344455544 57788753
Done!