BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020084
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 191 bits (485), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 170/302 (56%), Gaps = 9/302 (2%)
Query: 33 LQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTGV 92
L F++Y Q+CP+AE I+++ V + K A +R FHDC V+ CDAS+LL+
Sbjct: 9 LSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATG 68
Query: 93 ASEQASERSFGMR--NFKYVSTIKAALEAEC-PLKVSCADIVALSAREGIVMLGGPRIPI 149
EQ + + +R FK V+ I+ LE EC VSC+DI+AL+AR+ +V+ GGP +
Sbjct: 69 PGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYRV 128
Query: 150 KTGRRDSR-VSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCV 208
GRRDSR + +V +P + ++ + L++ +G+D +V + +G H++G HC
Sbjct: 129 PLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTI-SGGHTIGLAHCS 187
Query: 209 NLVHRLYPTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINH 268
+ RL+P DPT+ P + LK CP D V+ R TP + DN YY +++N
Sbjct: 188 SFEDRLFPRPDPTISPTFLSRLKRTCPAKGTDRRTVLDVR----TPNVFDNKYYIDLVNR 243
Query: 269 KGLLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEVRKDCRY 328
+GL + DQ L ++ T P V++ A + F EQF +I + + T DQGEVR++C
Sbjct: 244 EGLFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEVRRNCSV 303
Query: 329 VN 330
N
Sbjct: 304 RN 305
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 160/299 (53%), Gaps = 7/299 (2%)
Query: 33 LQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTGV 92
L N+YA CP A IK V K S +R FHDC V+ CDAS+LL+ +
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 93 ASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKT 151
E+ A + +R F+ + TIK+ +E+ CP VSCADI+A++AR+ +V LGG +
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 152 GRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLV 211
GRRDS + L+ +P +++ +S F++ G + +V L +GAH++G+ C
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTL-SGAHTIGQAQCTAFR 180
Query: 212 HRLYPTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGL 271
R+Y + +DP YA+ L+ CP+ D + + D TP DN YY N+ N KGL
Sbjct: 181 TRIYN--ESNIDPTYAKSLQANCPSVGGDTNLSPF---DVTTPNKFDNAYYINLRNKKGL 235
Query: 272 LIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEVRKDCRYVN 330
L DQQL + T V + N + F+ F A+ + +PLTG G++R +CR N
Sbjct: 236 LHSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 185 bits (469), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 159/307 (51%), Gaps = 12/307 (3%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y+ +CP A I++ + Q S +R FHDC V CDAS+LL+
Sbjct: 2 QLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGS 61
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+ SE+ A R F V IK ALE CP VSC+D++AL++ + + GGP +
Sbjct: 62 IQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVL 121
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNL 210
GRRDS + LA IP+ +S++ F+++G++ +VAL +GAH+ GR C
Sbjct: 122 LGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVAL-SGAHTFGRARCGVF 180
Query: 211 VHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 265
+RL+ DPTL+ L+ CP + A D TP DNNY+ N+
Sbjct: 181 NNRLFNFSGTGNPDPTLNSTLLSTLQQLCP---QNGSASTITNLDLSTPDAFDNNYFANL 237
Query: 266 INHKGLLIVDQQLAS--DPRTTPFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEVR 323
++ GLL DQ+L S T V A+N + F + F++++ + +PLTG GE+R
Sbjct: 238 QSNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIR 297
Query: 324 KDCRYVN 330
DC+ VN
Sbjct: 298 LDCKKVN 304
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 181 bits (460), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 156/308 (50%), Gaps = 12/308 (3%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y SCP I++ +V A S +R FHDC V CDAS+LL+ T
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+E+ A + R F + +KAA+E+ CP VSCAD++ ++A++ + + GGP +
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNL 210
GRRDS ++L +P ++ F ++G++ + +G H+ G+ C ++
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSI 181
Query: 211 VHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 265
+ RLY DPTL+ Y + L+G CP + + D TP I DN YY N+
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL---NGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 266 INHKGLLIVDQQLASDPRTT---PFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEV 322
KGL+ DQ+L S P T P V+ A + F F A+ + PLTG QG++
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 323 RKDCRYVN 330
R +CR VN
Sbjct: 299 RLNCRVVN 306
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 181 bits (459), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 155/308 (50%), Gaps = 12/308 (3%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y SCP I++ +V A S +R FHDC V CDAS+LL+ T
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+E+ A + R F + +KAA+E+ CP VSCAD++ ++A++ + + GGP +
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNL 210
GRRDS ++L +P ++ F ++G++ + +G HS G+ C +
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFI 180
Query: 211 VHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 265
+ RLY DPTL+ Y + L+G CP + + D TP I DN YY N+
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL---NGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 266 INHKGLLIVDQQLASDPRTT---PFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEV 322
KGL+ DQ+L S P T P V+ A + F F A+ + PLTG QG++
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 323 RKDCRYVN 330
R +CR VN
Sbjct: 298 RLNCRVVN 305
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 181 bits (459), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 155/308 (50%), Gaps = 12/308 (3%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y SCP I++ +V A S +R FHDC V CDAS+LL+ T
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+E+ A + R F + +KAA+E+ CP VSCAD++ ++A++ + + GGP +
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNL 210
GRRDS ++L +P ++ F ++G++ + +G H+ G+ C +
Sbjct: 122 LGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 211 VHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 265
+ RLY DPTL+ Y + L+G CP + + D TP I DN YY N+
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL---NGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 266 INHKGLLIVDQQLASDPRTT---PFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEV 322
KGL+ DQ+L S P T P V+ A + F F A+ + PLTG QG++
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 323 RKDCRYVN 330
R +CR VN
Sbjct: 299 RLNCRVVN 306
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 181 bits (459), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 155/308 (50%), Gaps = 12/308 (3%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y SCP I++ +V A S +R FHDC V CDAS+LL+ T
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+E+ A + R F + +KAA+E+ CP VSCAD++ ++A++ + + GGP +
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNL 210
GRRDS ++L +P ++ F ++G++ + +G H+ G+ C +
Sbjct: 122 LGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 211 VHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 265
+ RLY DPTL+ Y + L+G CP + + D TP I DN YY N+
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL---NGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 266 INHKGLLIVDQQLASDPRTT---PFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEV 322
KGL+ DQ+L S P T P V+ A + F F A+ + PLTG QG++
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 323 RKDCRYVN 330
R +CR VN
Sbjct: 299 RLNCRVVN 306
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 181 bits (458), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 155/308 (50%), Gaps = 12/308 (3%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y SCP I++ +V A S +R FHDC V CDAS+LL+ T
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+E+ A + R F + +KAA+E+ CP VSCAD++ ++A++ + + GGP +
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNL 210
GRRDS ++L +P ++ F ++G++ + +G H+ G+ C +
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 211 VHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 265
+ RLY DPTL+ Y + L+G CP + + D TP I DN YY N+
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL---NGNLSALVDMDLRTPTIFDNKYYVNL 238
Query: 266 INHKGLLIVDQQLASDPRTT---PFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEV 322
KGL+ DQ+L S P T P V+ A + F F A+ + PLTG QG++
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 323 RKDCRYVN 330
R +CR VN
Sbjct: 299 RLNCRVVN 306
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 180 bits (457), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 155/308 (50%), Gaps = 12/308 (3%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y SCP I++ +V A S +R FHDC V CDAS+LL+ T
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+E+ A + R F + +KAA+E+ CP VSCAD++ ++A++ + + GGP +
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNL 210
GRRDS ++L +P ++ F ++G++ + +G H+ G+ C +
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 211 VHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 265
+ RLY DPTL+ Y + L+G CP + + D TP I DN YY N+
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL---NGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 266 INHKGLLIVDQQLASDPRTT---PFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEV 322
KGL+ DQ+L S P T P V+ A + F F A+ + PLTG QG++
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 323 RKDCRYVN 330
R +CR VN
Sbjct: 299 RLNCRVVN 306
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 180 bits (457), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 155/308 (50%), Gaps = 12/308 (3%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y SCP I++ +V A S +R FHDC V CDAS+LL+ T
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+E+ A + R F + +KAA+E+ CP VSCAD++ ++A++ + + GGP +
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNL 210
GRRDS ++L +P ++ F ++G++ + +G H+ G+ C +
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 211 VHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 265
+ RLY DPTL+ Y + L+G CP + + D TP I DN YY N+
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL---NGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 266 INHKGLLIVDQQLASDPRTT---PFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEV 322
KGL+ DQ+L S P T P V+ A + F F A+ + PLTG QG++
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 323 RKDCRYVN 330
R +CR VN
Sbjct: 298 RLNCRVVN 305
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/309 (33%), Positives = 158/309 (51%), Gaps = 14/309 (4%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y SCP I++ +V A S +R FHDC V CDAS+LL+ T
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+E+ A + R F + +KAA+E+ CP VSCAD++ ++A++ + + GGP +
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGID-DEGVVALYAGAHSVGRVHCVN 209
GRRDS ++L +P ++ F ++G++ +VALY G H+ G+ C
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALY-GGHTFGKNQCRF 179
Query: 210 LVHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKN 264
++ RLY DPTL+ Y + L+G CP + + D TP I DN YY N
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL---NGNLSALVDFDLRTPTIFDNKYYVN 236
Query: 265 IINHKGLLIVDQQLASDPRTT---PFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGE 321
+ KGL+ DQ+L S P T P V+ A + F F A+ + PLTG QG+
Sbjct: 237 LEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQ 296
Query: 322 VRKDCRYVN 330
+R +CR VN
Sbjct: 297 IRLNCRVVN 305
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 155/308 (50%), Gaps = 12/308 (3%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y SCP I++ +V A S +R FHDC V CDAS+LL+ T
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+E+ A + R F + +KAA+E+ CP VSCAD++ ++A++ + + GGP +
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNL 210
GRRDS ++L +P ++ F ++G++ + +G H+ G+ C +
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 211 VHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 265
+ RLY DPTL+ Y + L+G CP + + D TP I DN YY N+
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL---NGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 266 INHKGLLIVDQQLASDPRTT---PFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEV 322
KGL+ DQ+L S P T P V+ A + F F A+ + PLTG QG++
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 323 RKDCRYVN 330
R +CR VN
Sbjct: 298 RLNCRVVN 305
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 155/308 (50%), Gaps = 12/308 (3%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y SCP I++ +V A S +R FHDC V CDAS+LL+ T
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+E+ A + R F + +KAA+E+ CP VSCAD++ ++A++ + + GGP +
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNL 210
GRRDS ++L +P ++ F ++G++ + +G H+ G+ C +
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 211 VHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 265
+ RLY DPTL+ Y + L+G CP + + D TP I DN YY N+
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL---NGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 266 INHKGLLIVDQQLASDPRTT---PFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEV 322
KGL+ DQ+L S P T P V+ A + F F A+ + PLTG QG++
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 323 RKDCRYVN 330
R +CR VN
Sbjct: 298 RLNCRVVN 305
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 177 bits (449), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 100/308 (32%), Positives = 154/308 (50%), Gaps = 12/308 (3%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y SCP I++ +V A S +R F DC V CDAS+LL+ T
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTS 61
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+E+ A + R F + +KAA+E+ CP VSCAD++ ++A++ + + GGP +
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNL 210
GRRDS ++L +P ++ F ++G++ + +G H+ G+ C +
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 211 VHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 265
+ RLY DPTL+ Y + L+G CP + + D TP I DN YY N+
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL---NGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 266 INHKGLLIVDQQLASDPRTT---PFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEV 322
KGL+ DQ+L S P T P V+ A + F F A+ + PLTG QG++
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 323 RKDCRYVN 330
R +CR VN
Sbjct: 299 RLNCRVVN 306
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 176 bits (447), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 163/305 (53%), Gaps = 8/305 (2%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLE-TVT 90
+LQ +Y SCP AE +++Q V + + A +R FHDC V+ CDAS+LL+ T
Sbjct: 1 DLQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTAN 60
Query: 91 GVASEQASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
A + A + +R F+ ++ K+A+EA CP VSCADI+A +AR+ + G +
Sbjct: 61 NTAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVP 120
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNL 210
+GRRD VS +E IP+ + ++ F + + + +V L +GAHS+G HC +
Sbjct: 121 SGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTL-SGAHSIGVAHCSSF 179
Query: 211 VHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 265
+RLY +DPTL P YA L+ CP + + D TP +LDN YY +
Sbjct: 180 TNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSL-DIITPSVLDNMYYTGV 238
Query: 266 INHKGLLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEVRKD 325
GLL DQ L ++ + V+ A N + + +F++A+ + + LTG QGE+R +
Sbjct: 239 QLTLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTN 298
Query: 326 CRYVN 330
C VN
Sbjct: 299 CSVVN 303
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 174 bits (442), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 153/308 (49%), Gaps = 12/308 (3%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y SCP I++ +V A S + F DC V CDAS+LL+ T
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTS 60
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+E+ A + R F + +KAA+E+ CP VSCAD++ ++A++ + + GGP +
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNL 210
GRRDS ++L +P ++ F ++G++ + +G H+ G+ C +
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 211 VHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 265
+ RLY DPTL+ Y + L+G CP + + D TP I DN YY N+
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL---NGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 266 INHKGLLIVDQQLASDPRTT---PFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEV 322
KGL+ DQ+L S P T P V+ A + F F A+ + PLTG QG++
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 323 RKDCRYVN 330
R +CR VN
Sbjct: 298 RLNCRVVN 305
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 156/307 (50%), Gaps = 12/307 (3%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
L +YA +CP A +++ V Q + S +R FHDC V CDAS+LL+
Sbjct: 3 SLNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGS 62
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+ SE+ A + R F V IK ALE CP VSC D++AL+++ + + GGP +
Sbjct: 63 IISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVD 122
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNL 210
GRRD+ + A IP+ ++ S F+++G++ +VAL +GAH+ GR C
Sbjct: 123 LGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVAL-SGAHTFGRATCGVF 181
Query: 211 VHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 265
+RL+ DPTL+ L+ CP + D TP DNNY+ N+
Sbjct: 182 SNRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNL---DLSTPDAFDNNYFTNL 238
Query: 266 INHKGLLIVDQQLAS--DPRTTPFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEVR 323
++ GLL DQ+L S T V A+N + F + F++++ + +PLTG GE+R
Sbjct: 239 QSNNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIR 298
Query: 324 KDCRYVN 330
DC+ N
Sbjct: 299 LDCKKTN 305
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 158 bits (400), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/309 (34%), Positives = 160/309 (51%), Gaps = 20/309 (6%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L + YA+SCP +I+++QV A S +R FHDC V CDASLLL+ G
Sbjct: 1 QLSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLD---G 57
Query: 92 VASEQASERSF-GMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
SE+ + + R F+ + TIKAA+E CP VSCADI+ L+AR+ +V+ GGP +
Sbjct: 58 ADSEKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVA 117
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNL 210
GR+D V+ +P+ + + ++ F ++ ++ VVAL +GAH+ G+ C
Sbjct: 118 LGRKDGLVANQNSANN-LPSPFEPLDAIIAKFVAVNLNITDVVAL-SGAHTFGQAKCAVF 175
Query: 211 VHRLYPTV-----DPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 265
+RL+ D TL+ L+ CP ++ + A DR T DNNY+KN+
Sbjct: 176 SNRLFNFTGAGNPDATLETSLLSNLQTVCPL---GGNSNITAPLDRSTTDTFDNNYFKNL 232
Query: 266 INHKGLLIVDQQLASDP----RTTPFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGE 321
+ KGLL DQ L S T V+ + + S F F+ A++ N G GE
Sbjct: 233 LEGKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFT--CAMIRMGNISNGASGE 290
Query: 322 VRKDCRYVN 330
VR +CR +N
Sbjct: 291 VRTNCRVIN 299
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 150/307 (48%), Gaps = 12/307 (3%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y ++CP I+ + + S +R FHDC V+ CD S+LL
Sbjct: 1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDT 60
Query: 92 VASEQASERSFG-MRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+ SEQ + + +R V+ IK A+E CP VSCADI+A++A V+ GGP P+
Sbjct: 61 IESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVP 120
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNL 210
GRRDS + + +P ++ + F G++ +V L +G H+ GR C
Sbjct: 121 LGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTL-SGGHTFGRARCSTF 179
Query: 211 VHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 265
++RLY DPTL+ Y E L+ RCP + D TP DN YY N+
Sbjct: 180 INRLYNFSNTGNPDPTLNTTYLEVLRARCPQ---NATGDNLTNLDLSTPDQFDNRYYSNL 236
Query: 266 INHKGLLIVDQQLASDP--RTTPFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEVR 323
+ GLL DQ+L S P T P V ++N + F F ++ + LTGD+GE+R
Sbjct: 237 LQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIR 296
Query: 324 KDCRYVN 330
C +VN
Sbjct: 297 LQCNFVN 303
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 44/200 (22%)
Query: 117 LEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIA 176
L+AE P+ +S AD L+ + + GGP +P GR D E +P+
Sbjct: 95 LKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKGSD 150
Query: 177 TALSVFN-SIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCP 235
VF ++G+ D+ +VAL +G H++G H K R
Sbjct: 151 HLRDVFGKAMGLTDQDIVAL-SGGHTIGAAH------------------------KERSG 185
Query: 236 TPDPDPDAVVYARNDRETPMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKM 291
P + N P+I DN+Y+ +++ +GLL + D+ L SDP P V K
Sbjct: 186 FEGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKY 235
Query: 292 AANNSYFHEQFSRAIALLSE 311
AA+ F ++ A LSE
Sbjct: 236 AADEDAFFADYAEAHQKLSE 255
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 44/200 (22%)
Query: 117 LEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIA 176
L+AE P+ +S AD L+ + + GGP +P GR D E +P+
Sbjct: 95 LKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKGSD 150
Query: 177 TALSVFN-SIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCP 235
VF ++G+ D+ +VAL +G H++G H K R
Sbjct: 151 HLRDVFGKAMGLTDQDIVAL-SGGHTIGAAH------------------------KERSG 185
Query: 236 TPDPDPDAVVYARNDRETPMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKM 291
P + N P+I DN+Y+ +++ +GLL + D+ L SDP P V K
Sbjct: 186 FEGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKY 235
Query: 292 AANNSYFHEQFSRAIALLSE 311
AA+ F ++ A LSE
Sbjct: 236 AADEDAFFADYAEAHQKLSE 255
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 44/200 (22%)
Query: 117 LEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIA 176
L+AE P+ +S AD L+ + + GGP +P GR D E +P+
Sbjct: 83 LKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKGSD 138
Query: 177 TALSVFN-SIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCP 235
VF ++G+ D+ +VAL +G H++G H K R
Sbjct: 139 HLRDVFGKAMGLTDQDIVAL-SGGHTIGAAH------------------------KERSG 173
Query: 236 TPDPDPDAVVYARNDRETPMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKM 291
P + N P+I DN+Y+ +++ +GLL + D+ L SDP P V K
Sbjct: 174 FEGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKY 223
Query: 292 AANNSYFHEQFSRAIALLSE 311
AA+ F ++ A LSE
Sbjct: 224 AADEDAFFADYAEAHQKLSE 243
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 44/200 (22%)
Query: 117 LEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIA 176
L+AE P+ +S AD L+ + + GGP +P GR D E +P+
Sbjct: 95 LKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKGSD 150
Query: 177 TALSVFN-SIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCP 235
VF ++G+ D+ +VAL +G H++G H K R
Sbjct: 151 HLRDVFGKAMGLTDQDIVAL-SGGHTIGAAH------------------------KERSG 185
Query: 236 TPDPDPDAVVYARNDRETPMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKM 291
P + N P+I DN+Y+ +++ +GLL + D+ L SDP P V K
Sbjct: 186 FEGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKY 235
Query: 292 AANNSYFHEQFSRAIALLSE 311
AA+ F ++ A LSE
Sbjct: 236 AADEDAFFADYAEAHQKLSE 255
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 83/200 (41%), Gaps = 44/200 (22%)
Query: 117 LEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIA 176
L+AE P+ +S AD L+ + + GGP +P GR D E +P+
Sbjct: 95 LKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKGSD 150
Query: 177 TALSVFN-SIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCP 235
VF ++G+ D+ +VAL +G H++G H
Sbjct: 151 HLRDVFGKAMGLTDQDIVAL-SGGHTIGAAHK---------------------------- 181
Query: 236 TPDPDPDAVVYARNDRETPMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKM 291
+A + P+I DN+Y+ +++ +GLL + D+ L SDP P V K
Sbjct: 182 ------EASGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKY 235
Query: 292 AANNSYFHEQFSRAIALLSE 311
AA+ F ++ A LSE
Sbjct: 236 AADEDAFFADYAEAHQKLSE 255
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 44/200 (22%)
Query: 117 LEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIA 176
L+AE P+ +S AD L+ + + GGP +P GR D E +P+
Sbjct: 83 LKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKGSD 138
Query: 177 TALSVFN-SIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCP 235
VF ++G+ D+ +VAL +G H++G H K R
Sbjct: 139 HLRDVFGKAMGLTDQDIVAL-SGGHTIGAAH------------------------KERSG 173
Query: 236 TPDPDPDAVVYARNDRETPMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKM 291
P + N P+I DN+Y+ +++ +GLL + D+ L SDP P V K
Sbjct: 174 FEGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKY 223
Query: 292 AANNSYFHEQFSRAIALLSE 311
AA+ F ++ A LSE
Sbjct: 224 AADEDAFFADYAEAHQKLSE 243
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 44/200 (22%)
Query: 117 LEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIA 176
L+AE P+ +S AD L+ + + GGP +P GR D E +P+
Sbjct: 83 LKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKGSD 138
Query: 177 TALSVFN-SIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCP 235
VF ++G+ D+ +VAL +G H++G H K R
Sbjct: 139 HLRDVFGKAMGLTDQDIVAL-SGGHTIGAAH------------------------KERSG 173
Query: 236 TPDPDPDAVVYARNDRETPMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKM 291
P + N P+I DN+Y+ +++ +GLL + D+ L SDP P V K
Sbjct: 174 FEGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKY 223
Query: 292 AANNSYFHEQFSRAIALLSE 311
AA+ F ++ A LSE
Sbjct: 224 AADEDAFFADYAEAHQKLSE 243
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 44/200 (22%)
Query: 117 LEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIA 176
L+AE P+ +S AD L+ + + GGP +P GR D E +P+
Sbjct: 83 LKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKGSD 138
Query: 177 TALSVFN-SIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCP 235
VF ++G+ D+ +VAL +G H++G H K R
Sbjct: 139 HLRDVFGKAMGLTDQDIVAL-SGGHTIGAAH------------------------KERSG 173
Query: 236 TPDPDPDAVVYARNDRETPMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKM 291
P + N P+I DN+Y+ +++ +GLL + D+ L SDP P V K
Sbjct: 174 FEGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKY 223
Query: 292 AANNSYFHEQFSRAIALLSE 311
AA+ F ++ A LSE
Sbjct: 224 AADEDAFFADYAEAHQKLSE 243
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 44/200 (22%)
Query: 117 LEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIA 176
L+AE P+ +S AD L+ + + GGP +P GR D E +P+
Sbjct: 95 LKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKGSD 150
Query: 177 TALSVFN-SIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCP 235
VF ++G+ D+ +VAL +G H++G H K R
Sbjct: 151 HLRDVFGKAMGLTDQDIVAL-SGGHTIGAAH------------------------KERSG 185
Query: 236 TPDPDPDAVVYARNDRETPMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKM 291
P + N P+I DN+Y+ +++ +GLL + D+ L SDP P V K
Sbjct: 186 FEGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKY 235
Query: 292 AANNSYFHEQFSRAIALLSE 311
AA+ F ++ A LSE
Sbjct: 236 AADEDAFFADYAEAHQKLSE 255
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 44/200 (22%)
Query: 117 LEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIA 176
L+AE P+ +S AD L+ + + GGP +P GR D E +P+
Sbjct: 95 LKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKGSD 150
Query: 177 TALSVFN-SIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCP 235
VF ++G+ D+ +VAL +G H++G H K R
Sbjct: 151 HLRDVFGKAMGLTDQDIVAL-SGGHTIGAAH------------------------KERSG 185
Query: 236 TPDPDPDAVVYARNDRETPMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKM 291
P + N P+I DN+Y+ +++ +GLL + D+ L SDP P V K
Sbjct: 186 FEGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKY 235
Query: 292 AANNSYFHEQFSRAIALLSE 311
AA+ F ++ A LSE
Sbjct: 236 AADEDAFFADYAEAHQKLSE 255
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 44/200 (22%)
Query: 117 LEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIA 176
L+AE P+ +S AD L+ + + GGP +P GR D E +P+
Sbjct: 95 LKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKGSD 150
Query: 177 TALSVFN-SIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCP 235
VF ++G+ D+ +VAL +G H++G H K R
Sbjct: 151 HLRDVFGKAMGLTDQDIVAL-SGGHTIGAAH------------------------KERSG 185
Query: 236 TPDPDPDAVVYARNDRETPMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKM 291
P + N P+I DN+Y+ +++ +GLL + D+ L SDP P V K
Sbjct: 186 FEGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKY 235
Query: 292 AANNSYFHEQFSRAIALLSE 311
AA+ F ++ A LSE
Sbjct: 236 AADEDAFFADYAEAHQKLSE 255
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 89/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N + T +P
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVAL-MGAHTLGKTHLKNSGYEGPWTANPN 196
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
+ DN++Y N++N
Sbjct: 197 ----------------------------------VFDNSFYLNLLNEDWKLEKNDANNEQ 222
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 223 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 90/230 (39%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVAL-MGAHTLGKTHLKNSGY--------- 187
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
+ A N+ + DN++Y N++N
Sbjct: 188 --------------------EGPWTANNN-----VFDNSFYLNLLNEDWKLEKNDANNEQ 222
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 223 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 89/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVAL-MGAHTLGKTHLKNSGYE-------- 188
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
P A T + DN++Y N++N
Sbjct: 189 -GPWDA-------------------------TNNVFDNSFYLNLLNEDWKLEKNDANNEQ 222
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 223 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 84/192 (43%), Gaps = 25/192 (13%)
Query: 125 VSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHN-DSIATAL-SVF 182
V+ AD+ L++ I GGP+IP+K GR D E +P+ S A L VF
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVF 146
Query: 183 NSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCPTPDPDPD 242
+G++D+ +VAL +GAH++GR P P +Y K P
Sbjct: 147 YRMGLNDKEIVAL-SGAHTLGRSR---------PDRSGWGKPE-TKYTKDGPGAPGGQSW 195
Query: 243 AVVYARNDRETPMILDNNYYKNIINHKG----LLIVDQQLASDPRTTPFVQKMAANNSYF 298
+ + DN+Y+K+I + +L D L DP + +K AA+ F
Sbjct: 196 TAQW--------LKFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAADPEAF 247
Query: 299 HEQFSRAIALLS 310
+ ++ A A LS
Sbjct: 248 FKDYAEAHAKLS 259
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 90/230 (39%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL +GAH++G+ H N +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVAL-SGAHTLGKTHLKNSGY--------- 187
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
+ A N+ + DN++Y N++N
Sbjct: 188 --------------------EGPWTANNN-----VFDNSFYLNLLNEDWKLEKNDANNEQ 222
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
L D L DP+ V++ A + F + FS+A L EN
Sbjct: 223 WDSKSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 17/189 (8%)
Query: 124 KVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIATALSVFN 183
++S AD+ L+A I +GGP IP GR D++ + + +P+ + + + VF
Sbjct: 85 QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFR 144
Query: 184 SIGIDDEGVVALYAGAHSVGRVHC-VNLVHRLYPTVDPTLDPVYAEYLKGRCPTPDPDPD 242
+G +D+ VAL GAH+ G H + H + D + L D D
Sbjct: 145 RLGFNDQETVAL-IGAHTCGETHIEFSGYHGPWTHDKNGFDNSFFTQLL--------DED 195
Query: 243 AVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASDPRTTPFVQKMAANNSYFHEQF 302
V+ N + M L + ++ +L D L DP +V+ A +N F++ F
Sbjct: 196 WVL---NPKVEQMQLMDRATTKLM----MLPSDVCLLLDPSYRKYVELYAKDNDRFNKDF 248
Query: 303 SRAIALLSE 311
+ A L+E
Sbjct: 249 ANAFKKLTE 257
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 17/189 (8%)
Query: 124 KVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIATALSVFN 183
++S AD+ L+A I +GGP IP GR D++ + + +P+ + + + VF
Sbjct: 84 QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFR 143
Query: 184 SIGIDDEGVVALYAGAHSVGRVHC-VNLVHRLYPTVDPTLDPVYAEYLKGRCPTPDPDPD 242
+G +D+ VAL GAH+ G H + H + D + L D D
Sbjct: 144 RLGFNDQETVAL-IGAHTCGECHIEFSGYHGPWTHDKNGFDNSFFTQLL--------DED 194
Query: 243 AVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASDPRTTPFVQKMAANNSYFHEQF 302
V+ N + M L + ++ +L D L DP +V+ A +N F++ F
Sbjct: 195 WVL---NPKVEQMQLMDRATTKLM----MLPSDVCLLLDPSYRKYVELYAKDNDRFNKDF 247
Query: 303 SRAIALLSE 311
+ A L+E
Sbjct: 248 ANAFKKLTE 256
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 17/189 (8%)
Query: 124 KVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIATALSVFN 183
++S AD+ L+A I +GGP IP GR D++ + + +P+ + + + VF
Sbjct: 85 QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFR 144
Query: 184 SIGIDDEGVVALYAGAHSVGRVHC-VNLVHRLYPTVDPTLDPVYAEYLKGRCPTPDPDPD 242
+G +D+ VAL GAH+ G H + H + D + L D D
Sbjct: 145 RLGFNDQETVAL-IGAHTCGECHIEFSGYHGPWTHDKNGFDNSFFTQLL--------DED 195
Query: 243 AVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASDPRTTPFVQKMAANNSYFHEQF 302
V+ N + M L + ++ +L D L DP +V+ A +N F++ F
Sbjct: 196 WVL---NPKVEQMQLMDRATTKLM----MLPSDVCLLLDPSYRKYVELYAKDNDRFNKDF 248
Query: 303 SRAIALLSE 311
+ A L+E
Sbjct: 249 ANAFKKLTE 257
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 25/211 (11%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 82 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 136
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N + +
Sbjct: 137 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGYEGGGANNVF 194
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASD 281
+ Y L + +ND NN + + +L D L D
Sbjct: 195 TNEFYLNLLN----------EDWKLEKNDA-------NNEQWDSKSGYMMLPTDYSLIQD 237
Query: 282 PRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
P+ V++ A + F + FS+A L EN
Sbjct: 238 PKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 268
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 25/211 (11%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 87 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 141
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N + +
Sbjct: 142 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGYEGGGANNVF 199
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASD 281
+ Y L + +ND NN + + +L D L D
Sbjct: 200 TNEFYLNLLN----------EDWKLEKNDA-------NNEQWDSKSGYMMLPTDYSLIQD 242
Query: 282 PRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
P+ V++ A + F + FS+A L EN
Sbjct: 243 PKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 273
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 89/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVAL-MGAHTLGKTHLKNSGY--------- 187
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
+ A N+ + DN++Y N++N
Sbjct: 188 --------------------EGPWTANNN-----VFDNSFYLNLLNEDWKLEKNDANNEQ 222
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
L D L DP+ V++ A + F + FS+A L EN
Sbjct: 223 WDSKSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 25/211 (11%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N + +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGYEGGGANNVF 193
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASD 281
+ Y L + +ND NN + + +L D L D
Sbjct: 194 TNEFYLNLLN----------EDWKLEKNDA-------NNEQWDSKSGYMMLPTDYSLIQD 236
Query: 282 PRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
P+ V++ A + F + FS+A L EN
Sbjct: 237 PKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 267
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 89/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+++ + F + ++D VVAL GAH++G+ H N +
Sbjct: 139 PDNGR-LPDYDKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGYE-------- 188
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
P A A N + N +Y N++N
Sbjct: 189 -GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQ 222
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 223 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 88/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGYE-------- 185
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
P A A N + N YY N++N
Sbjct: 186 -GPWGA-------------------ANN------VFTNEYYLNLLNEDWKLEKNDANNEQ 219
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 220 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 78/192 (40%), Gaps = 43/192 (22%)
Query: 125 VSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIATALSVFN- 183
VS AD L+ + + GGP +P GR D E +P+ VF
Sbjct: 90 VSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEP---PPEGRLPDATKGSDHLRDVFGK 146
Query: 184 SIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCPTPDPDPDA 243
++G+ D+ +VAL +G H++G H K R P
Sbjct: 147 AMGLSDQDIVAL-SGGHTIGAAH------------------------KERSGFEGP---- 177
Query: 244 VVYARNDRETPMILDNNYYKNIINHK--GLLIV--DQQLASDPRTTPFVQKMAANNSYFH 299
+ N P+I DN+Y+ ++ + GLL + D+ L +D P V+K AA+ F
Sbjct: 178 --WTSN----PLIFDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRPLVEKYAADEDVFF 231
Query: 300 EQFSRAIALLSE 311
++ A LSE
Sbjct: 232 ADYAEAHLKLSE 243
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 23/211 (10%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N Y
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKN---SGYEGPQGA 195
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASD 281
+ V+ D +ND NN + + +L D L D
Sbjct: 196 ANNVFTNEFYLNLLNED-----WKLEKNDA-------NNEQWDSKSGYMMLPTDYSLIQD 243
Query: 282 PRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
P+ V++ A + F + FS+A L EN
Sbjct: 244 PKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 23/211 (10%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N Y
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKN---SGYEGPGGA 193
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASD 281
+ V+ D +ND NN + + +L D L D
Sbjct: 194 ANNVFTNEFYLNLLNED-----WKLEKNDA-------NNEQWDSKSGYMMLPTDYSLIQD 241
Query: 282 PRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
P+ V++ A + F + FS+A L EN
Sbjct: 242 PKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 88/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 87 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 141
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 142 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGY--------- 190
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
+ A N+ + N +Y N++N
Sbjct: 191 --------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQ 225
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 226 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 275
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 88/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGY--------- 189
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
+ A N+ + N +Y N++N
Sbjct: 190 --------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQ 224
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 225 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 88/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGY--------- 189
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
+ A N+ + N +Y N++N
Sbjct: 190 --------------------EGPFGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQ 224
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 225 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 88/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGYE-------- 190
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
P A A N + N +Y N++N
Sbjct: 191 -GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQ 224
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 225 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 88/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 139 PDNGR-LPDMDKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGYE-------- 188
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
P A A N + N +Y N++N
Sbjct: 189 -GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQ 222
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 223 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 88/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-KGAHALGKTHLKNSGYE-------- 185
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
P A A N + N +Y N++N
Sbjct: 186 -GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQ 219
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 220 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 23/211 (10%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N Y
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKN---SGYEGPGGA 195
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASD 281
+ V+ D +ND NN + + +L D L D
Sbjct: 196 ANNVFTNEFYLNLLNED-----WKLEKNDA-------NNEQWDSKSGYMMLPTDYSLIQD 243
Query: 282 PRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
P+ V++ A + F + FS+A L EN
Sbjct: 244 PKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 88/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGYE-------- 190
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
P A A N + N +Y N++N
Sbjct: 191 -GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQ 224
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 225 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 88/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGYE-------- 188
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
P A A N + N +Y N++N
Sbjct: 189 -GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQ 222
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 223 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 88/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGY--------- 189
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
+ A N+ + N +Y N++N
Sbjct: 190 --------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQ 224
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 225 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 88/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGY--------- 187
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
+ A N+ + N +Y N++N
Sbjct: 188 --------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQ 222
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 223 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 88/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGYE-------- 185
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
P A A N + N +Y N++N
Sbjct: 186 -GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQ 219
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 220 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 88/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGY--------- 189
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
+ A N+ + N +Y N++N
Sbjct: 190 --------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQ 224
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 225 WDSKSGYIMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 88/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGY--------- 189
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
+ A N+ + N +Y N++N
Sbjct: 190 --------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQ 224
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 225 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 88/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGYE-------- 188
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
P A A N + N +Y N++N
Sbjct: 189 -GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQ 222
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 223 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 86/235 (36%), Gaps = 71/235 (30%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGY--------- 189
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPM-----ILDNNYYKNIINHKG------ 270
E P + N +Y N++N
Sbjct: 190 ------------------------------EGPWGCANNVFTNEFYLNLLNEDWKLEKND 219
Query: 271 -------------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 220 ANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 88/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 141 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGYE-------- 190
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
P A A N + N +Y N++N
Sbjct: 191 -GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQ 224
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 225 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 86/214 (40%), Gaps = 29/214 (13%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N Y
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKN---SGYEGPGGA 193
Query: 222 LDPVYAEYLKGRCPTPD---PDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQL 278
+ V+ D DA + + M+L NY L
Sbjct: 194 ANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTNY---------------SL 238
Query: 279 ASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
DP+ V++ A + F + FS+A L EN
Sbjct: 239 IQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 90/211 (42%), Gaps = 23/211 (10%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N Y
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKN---SGYEGPWGA 193
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASD 281
+ V+ +G + D +ND NN + + +L D L D
Sbjct: 194 ANNVFTN--EGYLNLLNED---WKLEKNDA-------NNEQWDSKSGYMMLPTDYSLIQD 241
Query: 282 PRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
P+ V++ A + F + FS+A L EN
Sbjct: 242 PKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 88/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGYE-------- 188
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
P A A N + N +Y N++N
Sbjct: 189 -GPWGA-------------------ANN------VFTNEFYLNLLNENWKLEKNDANNEQ 222
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 223 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 88/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGYE-------- 188
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
P A A N + N +Y N++N
Sbjct: 189 -GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQ 222
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 223 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 88/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 83 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 137
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 138 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGY--------- 186
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
+ A N+ + N +Y N++N
Sbjct: 187 --------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQ 221
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 222 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 271
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 88/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGY--------- 187
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
+ A N+ + N +Y N++N
Sbjct: 188 --------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQ 222
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 223 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 29/214 (13%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGYE-------- 188
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG---LLIVDQQL 278
P A C T + Y E + N+ + K +L D L
Sbjct: 189 -GPWGA---ANNCFTNE------FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL 238
Query: 279 ASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
DP+ V++ A + F + FS+A L EN
Sbjct: 239 IQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 27/213 (12%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHR--LYPTVD 219
+ + +P+ + + F + ++D VVAL GAH++G+ H N + +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGYEGPWGAANN 198
Query: 220 PTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLA 279
+ Y L D + + + + M+L NY L
Sbjct: 199 VFTNEFYLNLLNEDWKLEKNDANNEQW--DSKSGYMMLPTNY---------------SLI 241
Query: 280 SDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
DP+ V++ A + F + FS+A L EN
Sbjct: 242 QDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 23/211 (10%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N Y
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKN---SGYEGPQGA 190
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASD 281
+ V+ D +ND NN + + +L D L D
Sbjct: 191 ANNVFTNEFYLNLLNED-----WKLEKNDA-------NNEQWDSKSGYMMLPTDYSLIQD 238
Query: 282 PRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
P+ V++ A + F + FS+A L E+
Sbjct: 239 PKYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 86/235 (36%), Gaps = 71/235 (30%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H
Sbjct: 141 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVAL-MGAHALGKTHL-------------- 184
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPM-----ILDNNYYKNIINHKG------ 270
R+ E P + N +Y N++N
Sbjct: 185 -------------------------KRSGYEGPWGAANNVFTNEFYLNLLNENWKLEKND 219
Query: 271 -------------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 220 ANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 86/211 (40%), Gaps = 23/211 (10%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGY--------- 184
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASD 281
E G + + D + NN + + +L D L D
Sbjct: 185 ------EGPWGAANNVFTNEKYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQD 238
Query: 282 PRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
P+ V++ A + F + FS+A L EN
Sbjct: 239 PKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 23/211 (10%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N Y
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKN---SGYEGPGGA 193
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASD 281
+ V+ D +ND NN + + +L D L D
Sbjct: 194 ANNVFTNEFYLNLLNED-----WKLEKNDA-------NNEQWDSKSGYMMLPTDYSLIQD 241
Query: 282 PRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
P+ V++ A + F + FS+A L E+
Sbjct: 242 PKYLSIVKEYANDQDKFFKDFSKAFEKLLED 272
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 86/235 (36%), Gaps = 71/235 (30%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 77 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 131
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H
Sbjct: 132 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVAL-MGAHALGKTHL-------------- 175
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPM-----ILDNNYYKNIINHKG------ 270
R+ E P + N +Y N++N
Sbjct: 176 -------------------------KRSGYEGPFGAANNVFTNEFYLNLLNEDWKLEKND 210
Query: 271 -------------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 211 ANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 265
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 86/235 (36%), Gaps = 71/235 (30%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H
Sbjct: 136 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVAL-MGAHALGKTHL-------------- 179
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPM-----ILDNNYYKNIINHKG------ 270
R+ E P + N +Y N++N
Sbjct: 180 -------------------------KRSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKND 214
Query: 271 -------------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 215 ANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 23/211 (10%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N Y
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKN---SGYEGPGGA 190
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASD 281
+ V+ D +ND NN + + +L D L D
Sbjct: 191 ANNVFTNEFYLNLLNED-----WKLEKNDA-------NNEQWDSKSGYMMLPTDYSLIQD 238
Query: 282 PRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
P+ V++ A + F + FS+A L E+
Sbjct: 239 PKYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 87/230 (37%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEWQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 141 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGYE-------- 190
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
P A A N + N +Y N++N
Sbjct: 191 -GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQ 224
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 225 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 86/235 (36%), Gaps = 71/235 (30%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 83 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 137
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H
Sbjct: 138 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVAL-MGAHALGKTHL-------------- 181
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPM-----ILDNNYYKNIINHKG------ 270
R+ E P + N +Y N++N
Sbjct: 182 -------------------------KRSGYEGPFGAANNVFTNEFYLNLLNEDWKLEKND 216
Query: 271 -------------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 217 ANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDRFFKDFSKAFEKLLEN 271
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 88/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 87 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 141
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 142 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGY--------- 190
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
+ A N+ + N +Y N++N
Sbjct: 191 --------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQ 225
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L + L DP+ V++ A + F + FS+A L EN
Sbjct: 226 WDSKSGYMMLPTEYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 275
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 85/211 (40%), Gaps = 23/211 (10%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N Y
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKN---SGYEGPWGA 190
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASD 281
+ V+ D +ND + Y + L D L D
Sbjct: 191 ANNVFTNEFYLNLLNED-----WKLEKNDANNEQWDSKSGYMH-------LPTDYSLIQD 238
Query: 282 PRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
P+ V++ A + F + FS+A L EN
Sbjct: 239 PKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 23/211 (10%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 82 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 136
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N Y
Sbjct: 137 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKN---SGYEGPGGA 191
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASD 281
+ V+ D +ND NN + + +L D L D
Sbjct: 192 ANNVFTNEFYLNLLNED-----WKLEKNDA-------NNEQWDSKSGYMMLPTDYSLIQD 239
Query: 282 PRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
P+ V++ A + F + FS+A L E+
Sbjct: 240 PKYLSIVKEYANDQDKFFKDFSKAFEKLLED 270
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 86/235 (36%), Gaps = 71/235 (30%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVAL-MGAHALGKTHL-------------- 182
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPM-----ILDNNYYKNIINHKG------ 270
R+ E P + N +Y N++N
Sbjct: 183 -------------------------KRSGYEGPWGAANNVFTNEFYLNLLNENWKLEKND 217
Query: 271 -------------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 218 ANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 86/235 (36%), Gaps = 71/235 (30%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H
Sbjct: 141 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVAL-MGAHALGKTHL-------------- 184
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPM-----ILDNNYYKNIINHKG------ 270
R+ E P + N +Y N++N
Sbjct: 185 -------------------------KRSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKND 219
Query: 271 -------------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 220 ANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 87 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 141
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVN 209
+ + +P+ + + F + ++D VVAL GAH++G+ H N
Sbjct: 142 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKN 187
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 88/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGYE-------- 185
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
P A A N + N +Y N++N
Sbjct: 186 -GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQ 219
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L E+
Sbjct: 220 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 88/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGYE-------- 185
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
P A A N + N +Y N++N
Sbjct: 186 -GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQ 219
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L E+
Sbjct: 220 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVN 209
+ + +P+ + + F + ++D VVAL GAH++G+ H N
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKN 181
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 88/230 (38%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVAL-MGAHALGKTHLKNSGYE-------- 188
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
P A A N + N +Y N++N
Sbjct: 189 -GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQ 222
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L E+
Sbjct: 223 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 272
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 87/230 (37%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GAH++G+ N +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAHALGKTELKNSGY--------- 184
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
+ A N+ + N +Y N++N
Sbjct: 185 --------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQ 219
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 220 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 87/230 (37%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 82 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 136
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GA ++G+ H N +
Sbjct: 137 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAGALGKTHLKNSGYE-------- 186
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
P A A N + N +Y N++N
Sbjct: 187 -GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQ 220
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 221 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 270
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 87/230 (37%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 82 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 136
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GA ++G+ H N +
Sbjct: 137 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAGALGKTHLKNSGYE-------- 186
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
P A A N + N +Y N++N
Sbjct: 187 -GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQ 220
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 221 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 270
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 87/230 (37%), Gaps = 61/230 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPT 221
+ + +P+ + + F + ++D VVAL GA ++G+ H N +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-MGAGALGKTHLKNSGYE-------- 185
Query: 222 LDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG----------- 270
P A A N + N +Y N++N
Sbjct: 186 -GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQ 219
Query: 271 --------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 312
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 220 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHC 207
+ + +P+ + + F + ++D VVAL GAH++G+ H
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVAL-MGAHALGKTHL 182
>pdb|1MN1|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant D179n
Length = 357
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 79/196 (40%), Gaps = 28/196 (14%)
Query: 125 VSCADIVALSAREGIVML----GGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIATALS 180
+S AD+V + G V L G PR+ GR + + A V+ IP DS+ L
Sbjct: 100 ISAADLVQFA---GAVALSNCPGAPRLEFLAGRPNKTI---AAVDGLIPEPQDSVTKILQ 153
Query: 181 VF-NSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYP--TVDPTLDP-VYAEYLKGRCPT 236
F ++ G VV+L A +HSV R + V+ P + T D V+ E L
Sbjct: 154 RFEDAGGFTPFEVVSLLA-SHSVARANKVDQTIDAAPFDSTPFTFDTQVFLEVLLKGVGF 212
Query: 237 PDPDPDAVVYARNDRE--TPMILDNNYYKNIINHKGLLIVDQQLASDPRTTPFVQKMAAN 294
P A N E +P+ L + + L D LA DPRT Q
Sbjct: 213 PG-------SANNTGEVASPLPLGSGSDTGEMR----LQSDFALAHDPRTACIWQGFVNE 261
Query: 295 NSYFHEQFSRAIALLS 310
++ F A++ L+
Sbjct: 262 QAFMAASFRAAMSKLA 277
>pdb|1MN2|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant E35q,
D179n
Length = 357
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 79/196 (40%), Gaps = 28/196 (14%)
Query: 125 VSCADIVALSAREGIVML----GGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIATALS 180
+S AD+V + G V L G PR+ GR + + A V+ IP DS+ L
Sbjct: 100 ISAADLVQFA---GAVALSNCPGAPRLEFLAGRPNKTI---AAVDGLIPEPQDSVTKILQ 153
Query: 181 VF-NSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYP--TVDPTLDP-VYAEYLKGRCPT 236
F ++ G VV+L A +HSV R + V+ P + T D V+ E L
Sbjct: 154 RFEDAGGFTPFEVVSLLA-SHSVARANKVDQTIDAAPFDSTPFTFDTQVFLEVLLKGVGF 212
Query: 237 PDPDPDAVVYARNDRE--TPMILDNNYYKNIINHKGLLIVDQQLASDPRTTPFVQKMAAN 294
P A N E +P+ L + + L D LA DPRT Q
Sbjct: 213 PG-------SANNTGEVASPLPLGSGSDTGEMR----LQSDFALAHDPRTACIWQGFVNE 261
Query: 295 NSYFHEQFSRAIALLS 310
++ F A++ L+
Sbjct: 262 QAFMAASFRAAMSKLA 277
>pdb|1YYD|A Chain A, High Resolution Crystal Structure Of Manganese Peroxidase
pdb|1YYG|A Chain A, Manganese Peroxidase Complexed With Cd(Ii) Inhibitor
pdb|1YZP|A Chain A, Substrate-free Manganese Peroxidase
pdb|1YZR|A Chain A, Manganese Peroxidase-Sm(Iii) Complex
pdb|1MNP|A Chain A, Manganese Peroxidase
pdb|3M5Q|A Chain A, 0.93 A Structure Of Manganese-Bound Manganese Peroxidase
pdb|3M8M|A Chain A, 1.05 A Structure Of Manganese-Free Manganese Peroxidase
Length = 357
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 78/196 (39%), Gaps = 28/196 (14%)
Query: 125 VSCADIVALSAREGIVML----GGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIATALS 180
+S AD+V + G V L G PR+ GR + + A V+ IP DS+ L
Sbjct: 100 ISAADLVQFA---GAVALSNCPGAPRLEFLAGRPNKTI---AAVDGLIPEPQDSVTKILQ 153
Query: 181 VF-NSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYP--TVDPTLDP-VYAEYLKGRCPT 236
F ++ G VV+L A +HSV R V+ P + T D V+ E L
Sbjct: 154 RFEDAGGFTPFEVVSLLA-SHSVARADKVDQTIDAAPFDSTPFTFDTQVFLEVLLKGVGF 212
Query: 237 PDPDPDAVVYARNDRE--TPMILDNNYYKNIINHKGLLIVDQQLASDPRTTPFVQKMAAN 294
P A N E +P+ L + + L D LA DPRT Q
Sbjct: 213 PG-------SANNTGEVASPLPLGSGSDTGEMR----LQSDFALAHDPRTACIWQGFVNE 261
Query: 295 NSYFHEQFSRAIALLS 310
++ F A++ L+
Sbjct: 262 QAFMAASFRAAMSKLA 277
>pdb|3UT2|A Chain A, Crystal Structure Of Fungal Magkatg2
pdb|3UT2|B Chain B, Crystal Structure Of Fungal Magkatg2
Length = 764
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 40/204 (19%), Positives = 65/204 (31%), Gaps = 60/204 (29%)
Query: 124 KVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVS----YLAEVEKFIPNHND------ 173
K+S AD++ L+ + +G + GR D+ S Y F+P ND
Sbjct: 169 KISWADLMLLTGNVALENMGFKTLGFGGGRADTWQSDEAVYWGAETTFVPQGNDVRYNNS 228
Query: 174 -------------------------------------SIATALSVFNSIGIDDEGVVALY 196
S F +G++D VAL
Sbjct: 229 VDINARADKLEKPLAATHMGLIYVNPEGPNGTPDPAASAKDIREAFGRMGMNDTETVALI 288
Query: 197 AGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYL-------KGRCPTPDPDPDAVVYARN 249
AG H+ G+ H + P P + + L G P V++ +
Sbjct: 289 AGGHAFGKTHGAVKGSNIGPA--PEAADLGMQGLGWHNSVGDGNGPNQMTSGLEVIWTK- 345
Query: 250 DRETPMILDNNYYKNIINHKGLLI 273
TP N Y +++IN+ L+
Sbjct: 346 ---TPTKWSNGYLESLINNNWTLV 366
>pdb|1UB2|A Chain A, Crystal Structure Of Catalase-Peroxidase From
Synechococcus Pcc 7942
Length = 720
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 173 DSIATALSV---FNSIGIDDEGVVALYAGAHSVGRVH 206
D + TA V F + ++DE VAL AG H+VG+ H
Sbjct: 232 DPLKTAHDVRVTFARMAMNDEETVALTAGGHTVGKCH 268
>pdb|1X7U|A Chain A, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
pdb|1X7U|B Chain B, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
Length = 748
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 169 PNHN-DSIATALSV---FNSIGIDDEGVVALYAGAHSVGRVHCVN 209
P+ N D +A A + F + ++DE VAL AG H+ G+ H
Sbjct: 244 PDGNPDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGKTHGAG 288
>pdb|1MWV|A Chain A, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|1MWV|B Chain B, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|2B2O|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2O|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2Q|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2Q|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2R|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2R|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2S|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
pdb|2B2S|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
Length = 714
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 169 PNHN-DSIATALSV---FNSIGIDDEGVVALYAGAHSVGRVHCVN 209
P+ N D +A A + F + ++DE VAL AG H+ G+ H
Sbjct: 210 PDGNPDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGKTHGAG 254
>pdb|3N3Q|A Chain A, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
pdb|3N3Q|B Chain B, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
Length = 748
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 169 PNHN-DSIATALSV---FNSIGIDDEGVVALYAGAHSVGRVHCVN 209
P+ N D +A A + F + ++DE VAL AG H+ G+ H
Sbjct: 244 PDGNPDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGKTHGAG 288
>pdb|2DV2|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
pdb|2DV2|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
Length = 748
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 169 PNHN-DSIATALSV---FNSIGIDDEGVVALYAGAHSVGRVHCVN 209
P+ N D +A A + F + ++DE VAL AG H+ G+ H
Sbjct: 244 PDGNPDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGKTHGAG 288
>pdb|2DV1|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg
pdb|2DV1|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg
Length = 748
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 169 PNHN-DSIATALSV---FNSIGIDDEGVVALYAGAHSVGRVHCVN 209
P+ N D +A A + F + ++DE VAL AG H+ G+ H
Sbjct: 244 PDGNPDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGKTHGAG 288
>pdb|2FXJ|A Chain A, Crystal Structure Of Katg At Ph 8.5
pdb|2FXJ|B Chain B, Crystal Structure Of Katg At Ph 8.5
pdb|3N3O|A Chain A, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
pdb|3N3O|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
Length = 748
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 169 PNHN-DSIATALSV---FNSIGIDDEGVVALYAGAHSVGRVHCVN 209
P+ N D +A A + F + ++DE VAL AG H+ G+ H
Sbjct: 244 PDGNPDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGKTHGAG 288
>pdb|2FXG|A Chain A, Crystal Structure Of Katg At Ph 4.5
pdb|2FXG|B Chain B, Crystal Structure Of Katg At Ph 4.5
pdb|2FXH|A Chain A, Crystal Structure Of Katg At Ph 6.5
pdb|2FXH|B Chain B, Crystal Structure Of Katg At Ph 6.5
pdb|3N3N|A Chain A, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3N|B Chain B, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3P|A Chain A, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
pdb|3N3P|B Chain B, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
Length = 748
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 169 PNHN-DSIATALSV---FNSIGIDDEGVVALYAGAHSVGRVHCVN 209
P+ N D +A A + F + ++DE VAL AG H+ G+ H
Sbjct: 244 PDGNPDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGKTHGAG 288
>pdb|3N3R|A Chain A, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
pdb|3N3R|B Chain B, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
Length = 748
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 169 PNHN-DSIATALSV---FNSIGIDDEGVVALYAGAHSVGRVHCVN 209
P+ N D +A A + F + ++DE VAL AG H+ G+ H
Sbjct: 244 PDGNPDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGKTHGAG 288
>pdb|3N3S|A Chain A, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
pdb|3N3S|B Chain B, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
Length = 748
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 169 PNHN-DSIATALSV---FNSIGIDDEGVVALYAGAHSVGRVHCVN 209
P+ N D +A A + F + ++DE VAL AG H+ G+ H
Sbjct: 244 PDGNPDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGKTHGAG 288
>pdb|3VLK|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLK|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLL|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
pdb|3VLL|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
Length = 737
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 169 PNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVN 209
P+ S F+ + ++D+ AL AG H+ G+VH +
Sbjct: 228 PDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFGKVHGAD 268
>pdb|3VLH|A Chain A, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLH|B Chain B, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLI|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLI|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLJ|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
pdb|3VLJ|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
Length = 737
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 169 PNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVN 209
P+ S F+ + ++D+ AL AG H+ G+VH +
Sbjct: 228 PDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFGKVHGAD 268
>pdb|3UW8|A Chain A, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
pdb|3UW8|B Chain B, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
Length = 737
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 169 PNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVN 209
P+ S F+ + ++D+ AL AG H+ G+VH +
Sbjct: 228 PDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFGKVHGAD 268
>pdb|1ITK|A Chain A, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
pdb|1ITK|B Chain B, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
Length = 731
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 169 PNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVN 209
P+ S F+ + ++D+ AL AG H+ G+VH +
Sbjct: 228 PDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFGKVHGAD 268
>pdb|3VLM|A Chain A, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLM|B Chain B, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
Length = 737
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 169 PNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVN 209
P+ S F+ ++D+ AL AG H+ G+VH +
Sbjct: 228 PDPEASAKNIRQTFDRAAMNDKETAALIAGGHTFGKVHGAD 268
>pdb|1UYJ|A Chain A, Clostridium Perfringens Epsilon Toxin Shows Structural
Similarity With The Pore Forming Toxin Aerolysin
pdb|1UYJ|B Chain B, Clostridium Perfringens Epsilon Toxin Shows Structural
Similarity With The Pore Forming Toxin Aerolysin
pdb|1UYJ|C Chain C, Clostridium Perfringens Epsilon Toxin Shows Structural
Similarity With The Pore Forming Toxin Aerolysin
Length = 296
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 7/43 (16%)
Query: 149 IKTGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEG 191
I+ GR +++ +YL +EK+ PN A++ F+ + I+ +G
Sbjct: 24 IEKGRYNTKYNYLKRMEKYYPN-------AMAYFDKVTINPQG 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,136,930
Number of Sequences: 62578
Number of extensions: 371625
Number of successful extensions: 1053
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 219
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)