Query 020084
Match_columns 331
No_of_seqs 184 out of 1476
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:53:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020084.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020084hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 1E-106 3E-111 773.8 24.5 295 28-330 20-324 (324)
2 cd00693 secretory_peroxidase H 100.0 1.8E-99 4E-104 722.2 24.2 293 32-329 1-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 1.3E-72 2.7E-77 520.8 15.3 228 49-294 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 1.6E-69 3.5E-74 511.4 21.1 232 46-327 14-257 (289)
5 cd00691 ascorbate_peroxidase A 100.0 7.6E-67 1.6E-71 487.7 19.9 229 44-315 11-251 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 4E-65 8.6E-70 474.7 19.3 231 35-315 3-248 (250)
7 cd00692 ligninase Ligninase an 100.0 6.8E-64 1.5E-68 480.8 20.8 236 45-330 16-287 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 2E-63 4.2E-68 462.8 19.6 220 46-315 17-248 (251)
9 cd00314 plant_peroxidase_like 100.0 1.6E-59 3.5E-64 439.1 17.2 223 48-311 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 1.7E-57 3.6E-62 443.4 18.6 276 31-320 27-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 3.6E-55 7.9E-60 451.1 18.9 275 31-317 37-405 (716)
12 PRK15061 catalase/hydroperoxid 100.0 3.2E-51 6.8E-56 419.8 19.2 276 31-320 39-414 (726)
13 cd08201 plant_peroxidase_like_ 100.0 4.8E-51 1E-55 379.6 10.9 212 55-311 33-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 3.6E-39 7.7E-44 303.6 16.4 220 51-313 17-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 6.4E-34 1.4E-38 293.9 16.4 220 47-313 428-709 (716)
16 PRK15061 catalase/hydroperoxid 100.0 1.6E-33 3.5E-38 289.5 16.9 219 51-313 442-721 (726)
17 COG0376 KatG Catalase (peroxid 100.0 3.2E-30 7E-35 254.7 15.8 255 47-313 70-416 (730)
18 COG0376 KatG Catalase (peroxid 99.4 6.9E-13 1.5E-17 132.5 10.9 216 51-313 452-725 (730)
19 PTZ00411 transaldolase-like pr 56.5 1.3E+02 0.0027 29.8 10.6 60 141-201 179-251 (333)
20 PF11895 DUF3415: Domain of un 45.5 18 0.00038 28.4 2.2 18 297-314 2-19 (80)
21 PRK12309 transaldolase/EF-hand 34.2 3.4E+02 0.0073 27.4 9.9 72 141-232 173-258 (391)
22 TIGR00874 talAB transaldolase. 34.2 3.9E+02 0.0084 26.2 10.1 73 140-232 166-252 (317)
23 PF06163 DUF977: Bacterial pro 22.0 1E+02 0.0023 26.2 3.2 23 177-200 16-39 (127)
24 PF04225 OapA: Opacity-associa 21.6 74 0.0016 24.9 2.2 24 176-200 11-34 (85)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.2e-106 Score=773.81 Aligned_cols=295 Identities=33% Similarity=0.600 Sum_probs=279.4
Q ss_pred cCCCCCCcchhhccCchHHHHHHHHHHHHHHhcCCchhhHHHHHhcccCcccCCCceecccCCCCccccccccCCCCchh
Q 020084 28 SGMSELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTGVASEQASERSFGMRNF 107 (331)
Q Consensus 28 ~~~~~L~~~fY~~sCP~~e~iVr~~v~~~~~~~~~~aa~llRL~FHDcfv~GcDgSilld~~~~~~~E~~~~~N~~L~g~ 107 (331)
++.++|+++||++|||++|+||++.|++.+.++|+++|++|||+||||||+||||||||+++ ..||++++|.+|+||
T Consensus 20 ~~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~---~~Ek~a~~N~~l~Gf 96 (324)
T PLN03030 20 VQGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS---NTEKTALPNLLLRGY 96 (324)
T ss_pred chhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC---cccccCCCCcCcchH
Confidence 44567999999999999999999999999999999999999999999999999999999964 479999999999999
Q ss_pred HHHHHHHHHHHhhCCCccChhhHHHhhcchhhhhcCCCccccccCCCCCCCcchhhhhcCCCCCCCCHHHHHHHHHHCCC
Q 020084 108 KYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGI 187 (331)
Q Consensus 108 ~~Id~iK~~le~~cp~~VScADilalAar~AV~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl 187 (331)
++||.||++||++||++|||||||||||||||+++|||.|+|++||||+++|...++. +||.|+.++++|++.|+++||
T Consensus 97 ~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~Gl 175 (324)
T PLN03030 97 DVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQKQKFAAKGL 175 (324)
T ss_pred HHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999877764 899999999999999999999
Q ss_pred ChHHHHHHhhccccccccccccccccccC------CCCCCCCHHHHHHhhcCCCCCCCCCCCcccccCCCCCCCccChHH
Q 020084 188 DDEGVVALYAGAHSVGRVHCVNLVHRLYP------TVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNY 261 (331)
Q Consensus 188 ~~~dlVaL~sGaHTiG~ahc~~f~~Rl~~------~~Dp~ld~~~~~~L~~~Cp~~~~~~~~~~~~~lD~~tp~~FDn~Y 261 (331)
+.+|||+| |||||||++||.+|.+|||+ .+||+||+.|+..|++.|| ..+...+. +++|+.||.+|||+|
T Consensus 176 ~~~DlVaL-sGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp-~~~~~~~~--~~lD~~Tp~~FDn~Y 251 (324)
T PLN03030 176 NTQDLVTL-VGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCP-QNGDGSRR--IALDTGSSNRFDASF 251 (324)
T ss_pred CHHHheee-eeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCC-CCCCCCcc--ccCCCCCCcccccHH
Confidence 99999999 99999999999999999992 3699999999999999999 33333345 889999999999999
Q ss_pred HHHhhcccccccchhhhccCCCCHHHHHHhhcCh----HHHHHHHHHHHHHHHhCCCCCCCCCcccccccccC
Q 020084 262 YKNIINHKGLLIVDQQLASDPRTTPFVQKMAANN----SYFHEQFSRAIALLSENNPLTGDQGEVRKDCRYVN 330 (331)
Q Consensus 262 y~~l~~~~glL~SD~~L~~d~~t~~~V~~yA~d~----~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~~~n 330 (331)
|+||++++|+|+|||+|+.|++|+++|++||.|+ +.|+++|++||+|||+|+|+||.+|||||+|+++|
T Consensus 252 y~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 252 FSNLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred HHHHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 9999999999999999999999999999999875 59999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.8e-99 Score=722.18 Aligned_cols=293 Identities=43% Similarity=0.750 Sum_probs=280.9
Q ss_pred CCCcchhhccCchHHHHHHHHHHHHHHhcCCchhhHHHHHhcccCcccCCCceecccCCCCccccccccCCCCchhHHHH
Q 020084 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTGVASEQASERSFGMRNFKYVS 111 (331)
Q Consensus 32 ~L~~~fY~~sCP~~e~iVr~~v~~~~~~~~~~aa~llRL~FHDcfv~GcDgSilld~~~~~~~E~~~~~N~~L~g~~~Id 111 (331)
||+++||++|||++|+||+++|++.+.++++++|++|||+||||||+||||||||+++.++.+|+++++|.+|+||++|+
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~~l~g~~~i~ 80 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNLSLRGFDVID 80 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCCCcchhHHHH
Confidence 69999999999999999999999999999999999999999999999999999999887778999999999999999999
Q ss_pred HHHHHHHhhCCCccChhhHHHhhcchhhhhcCCCccccccCCCCCCCcchhhhhcCCCCCCCCHHHHHHHHHHCCCChHH
Q 020084 112 TIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEG 191 (331)
Q Consensus 112 ~iK~~le~~cp~~VScADilalAar~AV~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d 191 (331)
.||++||+.||++||||||||||||+||+++|||.|+|++||+|++++.+..+ +.||+|+.+++++++.|+++||+++|
T Consensus 81 ~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~~d 159 (298)
T cd00693 81 DIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTVTD 159 (298)
T ss_pred HHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cCCCCcccCHHHHHHHHHHcCCCHHH
Confidence 99999999999999999999999999999999999999999999998877665 78999999999999999999999999
Q ss_pred HHHHhhccccccccccccccccccC-----CCCCCCCHHHHHHhhcCCCCCCCCCCCcccccCCCCCCCccChHHHHHhh
Q 020084 192 VVALYAGAHSVGRVHCVNLVHRLYP-----TVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNII 266 (331)
Q Consensus 192 lVaL~sGaHTiG~ahc~~f~~Rl~~-----~~Dp~ld~~~~~~L~~~Cp~~~~~~~~~~~~~lD~~tp~~FDn~Yy~~l~ 266 (331)
|||| +||||||++||.+|.+|+|+ ++||+||+.|+..|+..|| ..+.+.++ +++|+.||.+|||+||++|+
T Consensus 160 ~VaL-~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp-~~~~~~~~--~~lD~~Tp~~FDn~Yy~~l~ 235 (298)
T cd00693 160 LVAL-SGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCP-AGGDDDTL--VPLDPGTPNTFDNSYYKNLL 235 (298)
T ss_pred heee-cccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCC-CCCCCCcc--ccCCCCCCCccccHHHHHHH
Confidence 9999 99999999999999999982 4799999999999999999 33344556 89999999999999999999
Q ss_pred cccccccchhhhccCCCCHHHHHHhhcChHHHHHHHHHHHHHHHhCCCCCCCCCccccccccc
Q 020084 267 NHKGLLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEVRKDCRYV 329 (331)
Q Consensus 267 ~~~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~~~ 329 (331)
.++|+|+|||+|+.|++|+++|++||.||+.|+++|++||+||++++|+||.+||||++|+++
T Consensus 236 ~~~glL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 236 AGRGLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred hcccCccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 999999999999999999999999999999999999999999999999999999999999975
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=1.3e-72 Score=520.85 Aligned_cols=228 Identities=43% Similarity=0.749 Sum_probs=210.9
Q ss_pred HHHHHHHHHHhcCCchhhHHHHHhcccCc-ccCCCceecccCCCCccccccccCCCCc-hhHHHHHHHHHHHhhCCCccC
Q 020084 49 IKQQVVQLYYKHGNTAVSWVRNLFHDCAV-KSCDASLLLETVTGVASEQASERSFGMR-NFKYVSTIKAALEAECPLKVS 126 (331)
Q Consensus 49 Vr~~v~~~~~~~~~~aa~llRL~FHDcfv-~GcDgSilld~~~~~~~E~~~~~N~~L~-g~~~Id~iK~~le~~cp~~VS 126 (331)
||++|+++++++++++|+||||+|||||+ +|||||||+. ..|+++++|.+|+ |+++|+.||+++|++||++||
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~-----~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS 75 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLF-----SAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVS 75 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGS-----TTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceecc-----ccccccccccCcceeeechhhHHhhhcccccCCCC
Confidence 89999999999999999999999999999 9999999983 5899999999998 999999999999999999999
Q ss_pred hhhHHHhhcchhhhhcCCCccccccCCCCCCCcchhhhhcCCCCCCCCHHHHHHHHHHCCCChHHHHHHhhccccccccc
Q 020084 127 CADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVH 206 (331)
Q Consensus 127 cADilalAar~AV~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaL~sGaHTiG~ah 206 (331)
|||||+||||+||+.+|||.|+|++||+|+++++..++ .+||.|+.++++|++.|+++|||++||||| |||||||++|
T Consensus 76 ~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaL-sGaHTiG~~~ 153 (230)
T PF00141_consen 76 CADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVAL-SGAHTIGRAH 153 (230)
T ss_dssp HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHH-HGGGGSTEES
T ss_pred HHHHHHHHhhhccccccccccccccccccccccccccc-ccccccccccchhhhhhhccccchhhhcce-ecccccccce
Confidence 99999999999999999999999999999999999877 789999999999999999999999999999 9999999999
Q ss_pred cccccccccCCCCCCCCHHHHHHhhcCCCCCCCCCCCcccccCCCCCCCccChHHHHHhhcccccccchhhhccCCCCHH
Q 020084 207 CVNLVHRLYPTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASDPRTTP 286 (331)
Q Consensus 207 c~~f~~Rl~~~~Dp~ld~~~~~~L~~~Cp~~~~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~t~~ 286 (331)
|.+|. |+|.++||+||+.|+.. .|+ . +.+. . +++| ||.+|||+||++|++++|+|+|||+|++|++|+.
T Consensus 154 c~~f~-rl~~~~dp~~d~~~~~~---~C~-~-~~~~-~--~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~~t~~ 222 (230)
T PF00141_consen 154 CSSFS-RLYFPPDPTMDPGYAGQ---NCN-S-GGDN-G--VPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDPETRP 222 (230)
T ss_dssp GGCTG-GTSCSSGTTSTHHHHHH---SSS-T-SGCT-C--EESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHSTTHHH
T ss_pred ecccc-cccccccccccccccee---ccC-C-Cccc-c--cccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCHHHHH
Confidence 99999 99977899999999988 994 2 3222 5 8888 9999999999999999999999999999999999
Q ss_pred HHHHhhcC
Q 020084 287 FVQKMAAN 294 (331)
Q Consensus 287 ~V~~yA~d 294 (331)
+|++||+|
T Consensus 223 ~V~~yA~d 230 (230)
T PF00141_consen 223 IVERYAQD 230 (230)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhcC
Confidence 99999986
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=1.6e-69 Score=511.43 Aligned_cols=232 Identities=25% Similarity=0.391 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHhcccC-------cccCCCceecccCCCCccccccccCCCCc-hhHHHHHHHHHH
Q 020084 46 EEIIKQQVVQLYYKHGNTAVSWVRNLFHDCA-------VKSCDASLLLETVTGVASEQASERSFGMR-NFKYVSTIKAAL 117 (331)
Q Consensus 46 e~iVr~~v~~~~~~~~~~aa~llRL~FHDcf-------v~GcDgSilld~~~~~~~E~~~~~N~~L~-g~~~Id~iK~~l 117 (331)
-+.+++++.+ +.++|.++|.+|||+||||| ++||||||+++ +|+++++|.+|+ ||++|+.||+++
T Consensus 14 ~~~~~~~~~~-~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~------~E~~~~~N~gL~~g~~vid~iK~~~ 86 (289)
T PLN02608 14 IEKARRDLRA-LIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE------EEYSHGANNGLKIAIDLCEPVKAKH 86 (289)
T ss_pred HHHHHHHHHH-HHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc------cccCCccccchHHHHHHHHHHHHHc
Confidence 4567777744 66799999999999999999 89999999984 699999999995 999999999987
Q ss_pred HhhCCCccChhhHHHhhcchhhhhcCCCccccccCCCCCCCcchhhhhcCCCCCCCCHHHHHHHHHHCCCChHHHHHHhh
Q 020084 118 EAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYA 197 (331)
Q Consensus 118 e~~cp~~VScADilalAar~AV~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaL~s 197 (331)
++||||||||||||+||+++|||.|+|++||+|++++++ +++||+|+.+++++++.|+++|||++|||+| +
T Consensus 87 -----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaL-s 157 (289)
T PLN02608 87 -----PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPE---EGRLPDAKKGAKHLRDVFYRMGLSDKDIVAL-S 157 (289)
T ss_pred -----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCc---cCCCcCCCCCHHHHHHHHHHcCCCHHHHhhh-c
Confidence 489999999999999999999999999999999999853 4689999999999999999999999999999 9
Q ss_pred ccccccccccccccccccCCCCCCCCHHHHHHhhcCCCCCCCCCCCcccccCCCCCCCccChHHHHHhhcc--ccc--cc
Q 020084 198 GAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINH--KGL--LI 273 (331)
Q Consensus 198 GaHTiG~ahc~~f~~Rl~~~~Dp~ld~~~~~~L~~~Cp~~~~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~--~gl--L~ 273 (331)
||||||++||. |+ + ..+++ + .||.+|||+||++++.+ +|+ |+
T Consensus 158 GAHTiG~ahc~----r~-g-----------------------~~g~~-----~-~Tp~~FDN~Yy~~ll~~~~~gll~L~ 203 (289)
T PLN02608 158 GGHTLGRAHPE----RS-G-----------------------FDGPW-----T-KEPLKFDNSYFVELLKGESEGLLKLP 203 (289)
T ss_pred ccccccccccc----CC-C-----------------------CCCCC-----C-CCCCccChHHHHHHHcCCcCCccccc
Confidence 99999999994 43 0 00112 2 68999999999999999 788 79
Q ss_pred chhhhccCCCCHHHHHHhhcChHHHHHHHHHHHHHHHhCCCCCCCCCccccccc
Q 020084 274 VDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEVRKDCR 327 (331)
Q Consensus 274 SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~ 327 (331)
|||+|+.|++|+++|++||.||+.|+++|++||+||++++|+||++||+.+.-+
T Consensus 204 SD~~L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~~ 257 (289)
T PLN02608 204 TDKALLEDPEFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKSTS 257 (289)
T ss_pred cCHhhhcChhHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccCc
Confidence 999999999999999999999999999999999999999999999999987643
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=7.6e-67 Score=487.74 Aligned_cols=229 Identities=28% Similarity=0.421 Sum_probs=207.6
Q ss_pred hHHHHHHHHHHHHHHhcCCchhhHHHHHhcccCcccCCCceeccc---CCCCccccccccCCCC-chhHHHHHHHHHHHh
Q 020084 44 KAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLET---VTGVASEQASERSFGM-RNFKYVSTIKAALEA 119 (331)
Q Consensus 44 ~~e~iVr~~v~~~~~~~~~~aa~llRL~FHDcfv~GcDgSilld~---~~~~~~E~~~~~N~~L-~g~~~Id~iK~~le~ 119 (331)
..++||+++|++.++ +++++|++|||+|||||+ ||+|+++++ +..+.+|+++++|.+| +||++|++||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~-- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY-- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc--
Confidence 457899999999999 999999999999999994 888887743 3334579999999999 7999999999986
Q ss_pred hCCCccChhhHHHhhcchhhhhcCCCccccccCCCCCCCcchhhhhcCCCCCCCCHHHHHHHHHHCCCChHHHHHHhhcc
Q 020084 120 ECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGA 199 (331)
Q Consensus 120 ~cp~~VScADilalAar~AV~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaL~sGa 199 (331)
++||||||||||||+||+.+|||.|+|++||+|++++....++.+||.|+.+++++++.|+++|||++|||+| +||
T Consensus 86 ---~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaL-sGa 161 (253)
T cd00691 86 ---PDISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVAL-SGA 161 (253)
T ss_pred ---CCCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHh-ccc
Confidence 4899999999999999999999999999999999999877777889999999999999999999999999999 999
Q ss_pred ccccccccccccccccCCCCCCCCHHHHHHhhcCCCCCCCCCCCcccccCCCCCCCccChHHHHHhhcccc--------c
Q 020084 200 HSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG--------L 271 (331)
Q Consensus 200 HTiG~ahc~~f~~Rl~~~~Dp~ld~~~~~~L~~~Cp~~~~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~~g--------l 271 (331)
||||++||..+ . + .+ .+ ..||.+|||+||+||+.++| +
T Consensus 162 HTiG~a~c~~~--~-~----------------------~g---~~------~~tp~~FDn~Yy~~ll~~~g~~~~~~~~~ 207 (253)
T cd00691 162 HTLGRCHKERS--G-Y----------------------DG---PW------TKNPLKFDNSYFKELLEEDWKLPTPGLLM 207 (253)
T ss_pred ceeecccccCC--C-C----------------------CC---CC------CCCCCcccHHHHHHHhcCCCccCcCccee
Confidence 99999999521 0 0 01 11 26999999999999999999 9
Q ss_pred ccchhhhccCCCCHHHHHHhhcChHHHHHHHHHHHHHHHhCCCC
Q 020084 272 LIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSENNPL 315 (331)
Q Consensus 272 L~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~ 315 (331)
|+|||+|+.|++|+.+|+.||.|+++|+++|++||+||+++||.
T Consensus 208 L~sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 208 LPTDKALLEDPKFRPYVELYAKDQDAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred chhhHHHHcCccHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999986
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=4e-65 Score=474.74 Aligned_cols=231 Identities=30% Similarity=0.459 Sum_probs=207.1
Q ss_pred cchhhc--cCchHHHHHHHHHHHHHHhcCCchhhHHHHHhc-----ccCcc--cCCCceecccCCCCccccccccCCCC-
Q 020084 35 FNYYAQ--SCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFH-----DCAVK--SCDASLLLETVTGVASEQASERSFGM- 104 (331)
Q Consensus 35 ~~fY~~--sCP~~e~iVr~~v~~~~~~~~~~aa~llRL~FH-----Dcfv~--GcDgSilld~~~~~~~E~~~~~N~~L- 104 (331)
.+||.. -|+.+++.+++.+++.+ .+++++|.||||+|| ||+++ ||||||.+ .+|+++++|.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~------~~E~~~~~N~gl~ 75 (250)
T PLN02364 3 KNYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF------DAEQAHGANSGIH 75 (250)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccc------cccccCCCccCHH
Confidence 356663 48899999999999988 689999999999999 88886 99999944 479999999999
Q ss_pred chhHHHHHHHHHHHhhCCCccChhhHHHhhcchhhhhcCCCccccccCCCCCCCcchhhhhcCCCCCCCCHHHHHHHHHH
Q 020084 105 RNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNS 184 (331)
Q Consensus 105 ~g~~~Id~iK~~le~~cp~~VScADilalAar~AV~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~ 184 (331)
+||++|+.||+++ ++||||||||||||+||+++|||.|+|++||+|++++++ +++||.|+.++++|++.|++
T Consensus 76 ~~~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~lP~p~~~~~~l~~~F~~ 147 (250)
T PLN02364 76 IALRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPP---EGRLPDATKGCDHLRDVFAK 147 (250)
T ss_pred HHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccc---cCCCCCCCcCHHHHHHHHHH
Confidence 6999999999998 589999999999999999999999999999999999864 45799999999999999997
Q ss_pred -CCCChHHHHHHhhccccccccccccccccccCCCCCCCCHHHHHHhhcCCCCCCCCCCCcccccCCCCCCCccChHHHH
Q 020084 185 -IGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYK 263 (331)
Q Consensus 185 -~Gl~~~dlVaL~sGaHTiG~ahc~~f~~Rl~~~~Dp~ld~~~~~~L~~~Cp~~~~~~~~~~~~~lD~~tp~~FDn~Yy~ 263 (331)
+|||++||||| +||||||++||. |+. ..+.+ + .||.+|||+||+
T Consensus 148 ~~Gl~~~d~VaL-sGaHTiG~~hc~----r~~------------------------~~g~~-----~-~tp~~fDn~Yy~ 192 (250)
T PLN02364 148 QMGLSDKDIVAL-SGAHTLGRCHKD----RSG------------------------FEGAW-----T-SNPLIFDNSYFK 192 (250)
T ss_pred hcCCCHHHheee-ecceeeccccCC----CCC------------------------CCCCC-----C-CCCCccchHHHH
Confidence 69999999999 999999999993 320 01112 2 689999999999
Q ss_pred Hhhcc--ccccc--chhhhccCCCCHHHHHHhhcChHHHHHHHHHHHHHHHhCCCC
Q 020084 264 NIINH--KGLLI--VDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSENNPL 315 (331)
Q Consensus 264 ~l~~~--~glL~--SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~ 315 (331)
+|+.+ +|+|. |||+|+.|++|+.+|++||.|++.|+++|++||+||+++|+-
T Consensus 193 ~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 193 ELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred HHhcCCcCCCccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 99999 89875 999999999999999999999999999999999999999873
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=6.8e-64 Score=480.82 Aligned_cols=236 Identities=26% Similarity=0.345 Sum_probs=212.5
Q ss_pred HHHHHHHHHHHHHHhcC---CchhhHHHHHhcccCc------------ccCCCceecccCCCCccccccccCCCCchhHH
Q 020084 45 AEEIIKQQVVQLYYKHG---NTAVSWVRNLFHDCAV------------KSCDASLLLETVTGVASEQASERSFGMRNFKY 109 (331)
Q Consensus 45 ~e~iVr~~v~~~~~~~~---~~aa~llRL~FHDcfv------------~GcDgSilld~~~~~~~E~~~~~N~~L~g~~~ 109 (331)
+|..|+++|++.+..+. ..|+.+|||+||||++ +||||||||+.+ .|+++++|.+|+ ++
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~----~E~~~~~N~gL~--~v 89 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD----IETAFHANIGLD--EI 89 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc----ccccCCCCCCHH--HH
Confidence 48899999999998554 4577799999999997 899999999753 699999999998 99
Q ss_pred HHHHHHHHHhhCCCccChhhHHHhhcchhhhh-cCCCccccccCCCCCCCcchhhhhcCCCCCCCCHHHHHHHHHHCCCC
Q 020084 110 VSTIKAALEAECPLKVSCADIVALSAREGIVM-LGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGID 188 (331)
Q Consensus 110 Id~iK~~le~~cp~~VScADilalAar~AV~~-~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~ 188 (331)
|+.||..+|+.| ||||||||||||+||+. .|||.|+|++||+|++++.+ +++||.|+.++++|++.|+++||+
T Consensus 90 vd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~---~g~LP~p~~sv~~l~~~F~~~Gf~ 163 (328)
T cd00692 90 VEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAP---DGLVPEPFDSVDKILARFADAGFS 163 (328)
T ss_pred HHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCc---ccCCCCCCCCHHHHHHHHHHcCCC
Confidence 999999999998 99999999999999995 69999999999999999864 457999999999999999999999
Q ss_pred hHHHHHHhhccccccccccccccccccCCCCCCCCHHHHHHhhcCCCCCCCCCCCcccccCCCCCCCccChHHHHHhh-c
Q 020084 189 DEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNII-N 267 (331)
Q Consensus 189 ~~dlVaL~sGaHTiG~ahc~~f~~Rl~~~~Dp~ld~~~~~~L~~~Cp~~~~~~~~~~~~~lD~~tp~~FDn~Yy~~l~-~ 267 (331)
.+|||+| +||||||++|. .||+++ + .++| .||.+|||+||+|++ .
T Consensus 164 ~~E~VaL-sGAHTiG~a~~----------~Dps~~---------------g-------~p~D-~TP~~FDn~Yf~~ll~~ 209 (328)
T cd00692 164 PDELVAL-LAAHSVAAQDF----------VDPSIA---------------G-------TPFD-STPGVFDTQFFIETLLK 209 (328)
T ss_pred HHHHhhh-cccccccccCC----------CCCCCC---------------C-------CCCC-CCcchhcHHHHHHHHHc
Confidence 9999999 99999999983 477653 1 4668 699999999999987 4
Q ss_pred ccc-------------------cccchhhhccCCCCHHHHHHhhcChHHHHHHHHHHHHHHHhCCCCCCCCCcccccccc
Q 020084 268 HKG-------------------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEVRKDCRY 328 (331)
Q Consensus 268 ~~g-------------------lL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~~ 328 (331)
+++ +|+||++|+.|++|+.+|++||+||++|+++|++||+||+++||. ...+.+|+.
T Consensus 210 ~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~----~~~l~dcs~ 285 (328)
T cd00692 210 GTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQD----NISLTDCSD 285 (328)
T ss_pred CCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCC----cchhccCcc
Confidence 555 499999999999999999999999999999999999999999886 447889998
Q ss_pred cC
Q 020084 329 VN 330 (331)
Q Consensus 329 ~n 330 (331)
|+
T Consensus 286 v~ 287 (328)
T cd00692 286 VI 287 (328)
T ss_pred cC
Confidence 86
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=2e-63 Score=462.77 Aligned_cols=220 Identities=29% Similarity=0.433 Sum_probs=198.4
Q ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHhcccCc-------ccCCCceecccCCCCccccccccCCCCc-hhHHHHHHHHHH
Q 020084 46 EEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAV-------KSCDASLLLETVTGVASEQASERSFGMR-NFKYVSTIKAAL 117 (331)
Q Consensus 46 e~iVr~~v~~~~~~~~~~aa~llRL~FHDcfv-------~GcDgSilld~~~~~~~E~~~~~N~~L~-g~~~Id~iK~~l 117 (331)
.+-++..+.+.+. +...+|.+|||+||||.+ +||||||.+. .|+++++|.||+ ++++|+.||+++
T Consensus 17 ~~~~~~~~~~~~~-~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~------~E~~~~~N~gL~~~~~~i~~iK~~~ 89 (251)
T PLN02879 17 VQRCKRKLRGLIA-EKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP------QELAHDANNGLDIAVRLLDPIKELF 89 (251)
T ss_pred HHHHHHHHHHHHh-CCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh------hhccCCCcCChHHHHHHHHHHHHHc
Confidence 4456778888774 679999999999999975 8999999763 699999999998 999999999998
Q ss_pred HhhCCCccChhhHHHhhcchhhhhcCCCccccccCCCCCCCcchhhhhcCCCCCCCCHHHHHHHHHHCCCChHHHHHHhh
Q 020084 118 EAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYA 197 (331)
Q Consensus 118 e~~cp~~VScADilalAar~AV~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaL~s 197 (331)
++||||||||||||+||+.+|||.|+|++||+|++++.+ +++||.|+.++++|++.|+++||+++||||| +
T Consensus 90 -----~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~---~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVAL-s 160 (251)
T PLN02879 90 -----PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPP---EGRLPQATKGVDHLRDVFGRMGLNDKDIVAL-S 160 (251)
T ss_pred -----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCc---ccCCCCCCCCHHHHHHHHHHcCCCHHHHeee-e
Confidence 589999999999999999999999999999999998753 5689999999999999999999999999999 9
Q ss_pred ccccccccccccccccccCCCCCCCCHHHHHHhhcCCCCCCCCCCCcccccCCCCCCCccChHHHHHhhcc--ccc--cc
Q 020084 198 GAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINH--KGL--LI 273 (331)
Q Consensus 198 GaHTiG~ahc~~f~~Rl~~~~Dp~ld~~~~~~L~~~Cp~~~~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~--~gl--L~ 273 (331)
||||||++||. |. +.++.+ | .||.+|||+||++|+.+ +|+ |+
T Consensus 161 GaHTiG~ah~~----r~------------------------g~~g~~-----d-~tp~~FDN~Yy~~ll~~~~~gll~L~ 206 (251)
T PLN02879 161 GGHTLGRCHKE----RS------------------------GFEGAW-----T-PNPLIFDNSYFKEILSGEKEGLLQLP 206 (251)
T ss_pred ccccccccccc----cc------------------------cCCCCC-----C-CCccceeHHHHHHHHcCCcCCCccch
Confidence 99999999995 21 111123 3 69999999999999999 888 67
Q ss_pred chhhhccCCCCHHHHHHhhcChHHHHHHHHHHHHHHHhCCCC
Q 020084 274 VDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSENNPL 315 (331)
Q Consensus 274 SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~ 315 (331)
|||+|+.||+|+++|++||.||++|+++|++||+||++||+.
T Consensus 207 SD~aL~~D~~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 207 TDKALLDDPLFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred hhHHHhcCCcHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999999974
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=1.6e-59 Score=439.13 Aligned_cols=223 Identities=30% Similarity=0.457 Sum_probs=204.3
Q ss_pred HHHHHHHHHHHhcCCchhhHHHHHhcccCcc--------cCCCceecccCCCCccccccccCCCC-chhHHHHHHHHHHH
Q 020084 48 IIKQQVVQLYYKHGNTAVSWVRNLFHDCAVK--------SCDASLLLETVTGVASEQASERSFGM-RNFKYVSTIKAALE 118 (331)
Q Consensus 48 iVr~~v~~~~~~~~~~aa~llRL~FHDcfv~--------GcDgSilld~~~~~~~E~~~~~N~~L-~g~~~Id~iK~~le 118 (331)
.|++.|++.+.+++.+++++|||+||||++. ||||||+++ +|+++++|.+| +++++|+.||+++|
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~------~e~~~~~N~~l~~~~~~l~~ik~~~~ 75 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE------PELDRPENGGLDKALRALEPIKSAYD 75 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEecc------ccccCcccccHHHHHHHHHHHHHHcC
Confidence 5889999999999999999999999999996 999999997 39999999986 79999999999999
Q ss_pred hhCCCccChhhHHHhhcchhhhhc--CCCccccccCCCCCCCcc--hhhhhcCCCCCCCCHHHHHHHHHHCCCChHHHHH
Q 020084 119 AECPLKVSCADIVALSAREGIVML--GGPRIPIKTGRRDSRVSY--LAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVA 194 (331)
Q Consensus 119 ~~cp~~VScADilalAar~AV~~~--GGP~~~v~~GR~D~~~s~--~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVa 194 (331)
. |++|||||||++|+++||+.+ |||.|+|++||+|++.+. ...+...+|.|+.+++++++.|+++||+++||||
T Consensus 76 ~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VA 153 (255)
T cd00314 76 G--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVA 153 (255)
T ss_pred C--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHh
Confidence 8 899999999999999999999 999999999999999764 2234556788888899999999999999999999
Q ss_pred Hhh-ccccc-cccccccccccccCCCCCCCCHHHHHHhhcCCCCCCCCCCCcccccCCCCCCCccChHHHHHhhccc---
Q 020084 195 LYA-GAHSV-GRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHK--- 269 (331)
Q Consensus 195 L~s-GaHTi-G~ahc~~f~~Rl~~~~Dp~ld~~~~~~L~~~Cp~~~~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~~--- 269 (331)
| + ||||| |++||..|..|+ |+ +|..||.+|||+||++++.++
T Consensus 154 L-~~GaHti~G~~~~~~~~~~~-------------------~~-------------~~~~tp~~fDN~yy~~l~~~~~~~ 200 (255)
T cd00314 154 L-SAGAHTLGGKNHGDLLNYEG-------------------SG-------------LWTSTPFTFDNAYFKNLLDMNWEW 200 (255)
T ss_pred h-ccCCeeccCcccCCCCCccc-------------------CC-------------CCCCCCCccchHHHHHHhcCCccc
Confidence 9 9 99999 999998775543 22 234799999999999999998
Q ss_pred -------------ccccchhhhccCCCCHHHHHHhhcChHHHHHHHHHHHHHHHh
Q 020084 270 -------------GLLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSE 311 (331)
Q Consensus 270 -------------glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 311 (331)
++|+||++|+.|++|+.+|++||.|+++|+++|++||+||++
T Consensus 201 ~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 201 RVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred ccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999999999984
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=1.7e-57 Score=443.37 Aligned_cols=276 Identities=21% Similarity=0.279 Sum_probs=237.1
Q ss_pred CCCCcch-hhccCchH-HHHHHHHHHHHHHhc--------CCchhhHHHHHhcccCc-------ccCC-CceecccCCCC
Q 020084 31 SELQFNY-YAQSCPKA-EEIIKQQVVQLYYKH--------GNTAVSWVRNLFHDCAV-------KSCD-ASLLLETVTGV 92 (331)
Q Consensus 31 ~~L~~~f-Y~~sCP~~-e~iVr~~v~~~~~~~--------~~~aa~llRL~FHDcfv-------~GcD-gSilld~~~~~ 92 (331)
.++-.+| |.+.+-.. .+.|+++|++.+... ...+|.+|||+|||+.+ +|++ |+|.+.
T Consensus 27 ~p~~~~~~~~~~~~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~----- 101 (409)
T cd00649 27 NPMGEDFNYAEEFKKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA----- 101 (409)
T ss_pred CCCCCCCCHHHHhhhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc-----
Confidence 3455555 55555444 378999999999865 37999999999999997 8897 788764
Q ss_pred ccccccccCCCCc-hhHHHHHHHHHHHhhCCCccChhhHHHhhcchhhhhcCCCccccccCCCCCCCcchh---------
Q 020084 93 ASEQASERSFGMR-NFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLA--------- 162 (331)
Q Consensus 93 ~~E~~~~~N~~L~-g~~~Id~iK~~le~~cp~~VScADilalAar~AV~~~GGP~~~v~~GR~D~~~s~~~--------- 162 (331)
+|++++.|.+|. +..+++.||+++ |..||+||+|+||+..|||.+|||.|+|..||.|...+...
T Consensus 102 -pe~~~~~N~gL~~a~~~L~pik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~ 176 (409)
T cd00649 102 -PLNSWPDNVNLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEW 176 (409)
T ss_pred -cccCcHhhhhHHHHHHHHHHHHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhc
Confidence 799999999996 899999999987 34799999999999999999999999999999999764320
Q ss_pred ----------------------------hhhcCCCCCCCCHHHHHHHHHHCCCChHHHHHHhhccccccccccccccccc
Q 020084 163 ----------------------------EVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRL 214 (331)
Q Consensus 163 ----------------------------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaL~sGaHTiG~ahc~~f~~Rl 214 (331)
+....||+|..++.+|++.|++||||++|||||++||||||++||.+|.+||
T Consensus 177 ~~~~~~~~~~~l~~pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rl 256 (409)
T cd00649 177 LADKRYSGDRDLENPLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHV 256 (409)
T ss_pred ccccccccchhhccchhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccC
Confidence 1122699999999999999999999999999994599999999999999999
Q ss_pred cCCCCCCCCHHHHHHhh--cCCCCCCCCCCCcccccCC---CCCCCccChHHHHHhhc----------------------
Q 020084 215 YPTVDPTLDPVYAEYLK--GRCPTPDPDPDAVVYARND---RETPMILDNNYYKNIIN---------------------- 267 (331)
Q Consensus 215 ~~~~Dp~ld~~~~~~L~--~~Cp~~~~~~~~~~~~~lD---~~tp~~FDn~Yy~~l~~---------------------- 267 (331)
. +||.+++.|+..|. ++||...+.+..+ +.+| +.||.+|||+||++|++
T Consensus 257 g--~dP~~~~~~~~gLgw~~~Cp~g~g~~t~~--sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~ 332 (409)
T cd00649 257 G--PEPEAAPIEQQGLGWKNSYGTGKGKDTIT--SGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAG 332 (409)
T ss_pred C--CCCCcCHHHHHhhcccccCCCCCCCCCcc--ccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccc
Confidence 4 79999999999995 8999322333334 5688 47999999999999998
Q ss_pred --------------ccccccchhhhccCCCCHHHHHHhhcChHHHHHHHHHHHHHH--HhCCCCCCCCC
Q 020084 268 --------------HKGLLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALL--SENNPLTGDQG 320 (331)
Q Consensus 268 --------------~~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km--~~lgv~tg~~G 320 (331)
+++||+||++|+.||+++++|++||+|+++||++|++||+|| +.+||++--.|
T Consensus 333 ~~~~~d~~~~~~~~~~gmL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 333 ENTVPDAHDPSKKHAPMMLTTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred cccCCCccccccccCcccchhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 568999999999999999999999999999999999999999 69999986554
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=3.6e-55 Score=451.07 Aligned_cols=275 Identities=21% Similarity=0.263 Sum_probs=233.2
Q ss_pred CCCCcch-hhccCchH-HHHHHHHHHHHHHhc--------CCchhhHHHHHhcccCc-------ccCC-CceecccCCCC
Q 020084 31 SELQFNY-YAQSCPKA-EEIIKQQVVQLYYKH--------GNTAVSWVRNLFHDCAV-------KSCD-ASLLLETVTGV 92 (331)
Q Consensus 31 ~~L~~~f-Y~~sCP~~-e~iVr~~v~~~~~~~--------~~~aa~llRL~FHDcfv-------~GcD-gSilld~~~~~ 92 (331)
..+-.+| |.+.+-+. .+.|+++|++.+... ...+|.+|||+||++.+ |||+ |+|.+.
T Consensus 37 ~p~~~~f~y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~----- 111 (716)
T TIGR00198 37 NPMGEDFDYAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFA----- 111 (716)
T ss_pred CCCCCCccHHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecc-----
Confidence 3465666 66666444 467999999999875 36899999999999997 7884 778764
Q ss_pred ccccccccCCCCc-hhHHHHHHHHHHHhhCCCccChhhHHHhhcchhhhhcCCCccccccCCCCCCCcch----------
Q 020084 93 ASEQASERSFGMR-NFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL---------- 161 (331)
Q Consensus 93 ~~E~~~~~N~~L~-g~~~Id~iK~~le~~cp~~VScADilalAar~AV~~~GGP~~~v~~GR~D~~~s~~---------- 161 (331)
+|++++.|.+|. .+.+++.||++ ||++|||||||+||+++||+.+|||.|+|.+||+|+..+..
T Consensus 112 -P~~sw~~N~~Ldka~~lL~pIk~k----yp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~ 186 (716)
T TIGR00198 112 -PLNSWPDNVNLDKARRLLWPIKKK----YGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEW 186 (716)
T ss_pred -cccCchhhhhHHHHHHHHHHHHHH----CCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccch
Confidence 799999999996 88999999885 78999999999999999999999999999999999943210
Q ss_pred ----------------h----------hhhcCCCCCCCCHHHHHHHHHHCCCChHHHHHHhhcccccccccccccccccc
Q 020084 162 ----------------A----------EVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLY 215 (331)
Q Consensus 162 ----------------~----------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaL~sGaHTiG~ahc~~f~~Rl~ 215 (331)
. +....+|.|..++++|++.|++||||++|||||++||||||++||.+|.+||
T Consensus 187 l~~~~~~~~~l~~p~a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl- 265 (716)
T TIGR00198 187 LTSSREDRESLENPLAATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI- 265 (716)
T ss_pred hhccccccccccccchhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC-
Confidence 0 1122699999999999999999999999999995699999999999999998
Q ss_pred CCCCCCCCHHHHHHhhcCCCCCCCCCCCcccccCC---CCCCCccChHHHHHhhcc------------------------
Q 020084 216 PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARND---RETPMILDNNYYKNIINH------------------------ 268 (331)
Q Consensus 216 ~~~Dp~ld~~~~~~L~~~Cp~~~~~~~~~~~~~lD---~~tp~~FDn~Yy~~l~~~------------------------ 268 (331)
+ +||++++.|++.|+.+||...+....+..+.+| ..||.+|||+||+||+.+
T Consensus 266 g-~dP~~~~~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p 344 (716)
T TIGR00198 266 G-PDPEGAPIEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIP 344 (716)
T ss_pred C-CCCCcCHHHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccc
Confidence 4 899999999999999998533322111115677 579999999999999975
Q ss_pred ----------cccccchhhhccCCCCHHHHHHhhcChHHHHHHHHHHHHHHH--hCCCCCC
Q 020084 269 ----------KGLLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLS--ENNPLTG 317 (331)
Q Consensus 269 ----------~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~--~lgv~tg 317 (331)
+++|+||++|..||+++++|++||.|++.|+++|++||+||+ .+|++.-
T Consensus 345 ~~~~~~~~~~~~mL~SDlaL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~~ 405 (716)
T TIGR00198 345 DVEDPNKKHNPIMLDADLALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKSR 405 (716)
T ss_pred cccccccccccCccchhHHhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchhh
Confidence 689999999999999999999999999999999999999999 5666553
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=3.2e-51 Score=419.84 Aligned_cols=276 Identities=20% Similarity=0.284 Sum_probs=233.5
Q ss_pred CCCCcch-hhccCchH-HHHHHHHHHHHHHhc--------CCchhhHHHHHhcccCc-------ccCC-CceecccCCCC
Q 020084 31 SELQFNY-YAQSCPKA-EEIIKQQVVQLYYKH--------GNTAVSWVRNLFHDCAV-------KSCD-ASLLLETVTGV 92 (331)
Q Consensus 31 ~~L~~~f-Y~~sCP~~-e~iVr~~v~~~~~~~--------~~~aa~llRL~FHDcfv-------~GcD-gSilld~~~~~ 92 (331)
..+-.+| |.+.+-.. .+.|+++|.+.+... ...+|.+|||+||++.+ +||+ |+|.+.
T Consensus 39 ~p~~~~f~y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~----- 113 (726)
T PRK15061 39 NPMGEDFDYAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA----- 113 (726)
T ss_pred CCCCCCCCHHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCc-----
Confidence 3455666 66665444 468999999999865 37899999999999997 7886 678664
Q ss_pred ccccccccCCCCc-hhHHHHHHHHHHHhhCCCccChhhHHHhhcchhhhhcCCCccccccCCCCCCCcchh---------
Q 020084 93 ASEQASERSFGMR-NFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLA--------- 162 (331)
Q Consensus 93 ~~E~~~~~N~~L~-g~~~Id~iK~~le~~cp~~VScADilalAar~AV~~~GGP~~~v~~GR~D~~~s~~~--------- 162 (331)
+|++++.|.+|. +..+++.||+++ |..||+||+|+||+..|||.+|||.+++..||.|...+...
T Consensus 114 -pe~~w~~N~gL~ka~~~L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~ 188 (726)
T PRK15061 114 -PLNSWPDNVNLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEW 188 (726)
T ss_pred -ccccchhhhhHHHHHHHHHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccc
Confidence 799999999996 899999999998 35799999999999999999999999999999998654321
Q ss_pred -----------------------------hhhcCCCCCCCCHHHHHHHHHHCCCChHHHHHHhhcccccccccccccccc
Q 020084 163 -----------------------------EVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHR 213 (331)
Q Consensus 163 -----------------------------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaL~sGaHTiG~ahc~~f~~R 213 (331)
+-...+|+|..++.+|++.|++||||++|||||++||||||++||..|.+|
T Consensus 189 l~~~~r~~~~~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~r 268 (726)
T PRK15061 189 LGGDERYSGERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASH 268 (726)
T ss_pred cccccccccccccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCcccc
Confidence 001237999999999999999999999999999559999999999999999
Q ss_pred ccCCCCCCCCHHHHHHhh--cCCCCCCCCCCCcccccCC---CCCCCccChHHHHHhhcc--------------------
Q 020084 214 LYPTVDPTLDPVYAEYLK--GRCPTPDPDPDAVVYARND---RETPMILDNNYYKNIINH-------------------- 268 (331)
Q Consensus 214 l~~~~Dp~ld~~~~~~L~--~~Cp~~~~~~~~~~~~~lD---~~tp~~FDn~Yy~~l~~~-------------------- 268 (331)
| + +||.+++.+++.|. +.||...+.+..+ ..+| ..||.+|||+||++|+.+
T Consensus 269 l-g-pdP~~a~~~~qgLgw~~~c~~g~g~dt~t--sGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~ 344 (726)
T PRK15061 269 V-G-PEPEAAPIEEQGLGWKNSYGSGKGADTIT--SGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGA 344 (726)
T ss_pred c-C-CCCCcCHHHHHhccccccCCCCCCCCCcc--ccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCcc
Confidence 8 3 89999999999985 8999322333334 5677 579999999999999985
Q ss_pred ----------------cccccchhhhccCCCCHHHHHHhhcChHHHHHHHHHHHHHHH--hCCCCCCCCC
Q 020084 269 ----------------KGLLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLS--ENNPLTGDQG 320 (331)
Q Consensus 269 ----------------~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~--~lgv~tg~~G 320 (331)
.+||+||++|..||+++++|++||+|+++|+++|++||+||+ .+|+++---|
T Consensus 345 ~~~~~pd~~~~~~~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~ry~g 414 (726)
T PRK15061 345 AEDTVPDAHDPSKKHAPTMLTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSRYLG 414 (726)
T ss_pred ccccCCcccccccccCcccccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhhhcC
Confidence 589999999999999999999999999999999999999994 4777654333
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=4.8e-51 Score=379.64 Aligned_cols=212 Identities=22% Similarity=0.319 Sum_probs=180.0
Q ss_pred HHHHhcCCchhhHHHHHhcccC-------cccCCCceecccCCCCccccc-cccCCCCchhHHHHHHHHHHHhhCCCccC
Q 020084 55 QLYYKHGNTAVSWVRNLFHDCA-------VKSCDASLLLETVTGVASEQA-SERSFGMRNFKYVSTIKAALEAECPLKVS 126 (331)
Q Consensus 55 ~~~~~~~~~aa~llRL~FHDcf-------v~GcDgSilld~~~~~~~E~~-~~~N~~L~g~~~Id~iK~~le~~cp~~VS 126 (331)
.+...++.++|+||||+||||| ++||||||+++.. .+|+. .+.|.+|++|+.|+.+ +||
T Consensus 33 ~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~---~~En~G~~~n~~l~~~~~i~~~----------~VS 99 (264)
T cd08201 33 CAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD---RPENIGSGFNTTLNFFVNFYSP----------RSS 99 (264)
T ss_pred cCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC---ChhhccCchhhccccceeeccC----------ccC
Confidence 3445788999999999999999 8999999999842 46877 5667788898887653 699
Q ss_pred hhhHHHhhcchhhhhcCCCccccccCCCCCCCcchhhhhcCCCCCCCCHHHHHHHHHHCCCChHHHHHHhhc-ccccccc
Q 020084 127 CADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAG-AHSVGRV 205 (331)
Q Consensus 127 cADilalAar~AV~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaL~sG-aHTiG~a 205 (331)
||||||||||+||+.+|||.|+|++||+|++++.+. .||.|+.++++|++.|++|||+++|||+| +| |||||++
T Consensus 100 cADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~----glP~P~~~v~~l~~~Fa~~Gfs~~DmVaL-sggaHTiG~a 174 (264)
T cd08201 100 MADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA----GVPEPQTDLGTTTESFRRQGFSTSEMIAL-VACGHTLGGV 174 (264)
T ss_pred HHHHHHHHHHHHHHHcCCCeecccccCCCccccccc----cCCCCccCHHHHHHHHHHcCCChHHHhee-ecCCeeeeec
Confidence 999999999999999999999999999999988653 49999999999999999999999999999 95 9999999
Q ss_pred ccccccccccCCCCCCCCHHHHHHhhcCCCCCCCCC-CCcccccCCCCCCCccChHHHHHhhcccc----------cccc
Q 020084 206 HCVNLVHRLYPTVDPTLDPVYAEYLKGRCPTPDPDP-DAVVYARNDRETPMILDNNYYKNIINHKG----------LLIV 274 (331)
Q Consensus 206 hc~~f~~Rl~~~~Dp~ld~~~~~~L~~~Cp~~~~~~-~~~~~~~lD~~tp~~FDn~Yy~~l~~~~g----------lL~S 274 (331)
||..|.+++- | +.. +.. .++| .||.+|||+||.+++.+.. -++|
T Consensus 175 hc~~f~~~~~----~------------------g~~~~~~--~p~d-stp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~s 229 (264)
T cd08201 175 HSEDFPEIVP----P------------------GSVPDTV--LQFF-DTTIQFDNKVVTEYLSGTTNNPLVVGPNNTTNS 229 (264)
T ss_pred ccccchhhcC----C------------------ccccCCC--CCCC-CCccccchHHHHHHhcCCCCCceeecCCCCccc
Confidence 9998876642 1 111 011 4667 7999999999999998742 3689
Q ss_pred hhhhccCCCCHHHHHHhhcChHHHHHHHHHHHHHHHh
Q 020084 275 DQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSE 311 (331)
Q Consensus 275 D~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 311 (331)
|..+++....+.+ +..| ++..|.+.++..+.||.+
T Consensus 230 d~r~f~~d~n~t~-~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 230 DLRIFSSDGNVTM-NELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred hhhheecCccHHH-HHhc-ChHHHHHHHHHHHHHHhC
Confidence 9999998877766 6677 799999999999999974
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=3.6e-39 Score=303.62 Aligned_cols=220 Identities=15% Similarity=0.219 Sum_probs=180.2
Q ss_pred HHHHHHHHhcCCchhhHHHHHhcccCc-------ccCCCc-eecccCCCCccccccccCCC--Cc-hhHHHHHHHHHHHh
Q 020084 51 QQVVQLYYKHGNTAVSWVRNLFHDCAV-------KSCDAS-LLLETVTGVASEQASERSFG--MR-NFKYVSTIKAALEA 119 (331)
Q Consensus 51 ~~v~~~~~~~~~~aa~llRL~FHDcfv-------~GcDgS-illd~~~~~~~E~~~~~N~~--L~-g~~~Id~iK~~le~ 119 (331)
+.+++.+......++.||||+||++.+ ||++|+ |.| .+|++++.|.+ |. .+.+++.||+++..
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl------~pe~~w~~N~~~~L~~~~~~Le~ik~~~~~ 90 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRL------APQKDWEVNEPEELAKVLAVLEGIQKEFNE 90 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccC------ccccCcCccCcHHHHHHHHHHHHHHHHhcc
Confidence 566777777788999999999999997 899998 766 47999999998 86 89999999999842
Q ss_pred h-CCC-ccChhhHHHhhcchhhhhcCC-----CccccccCCCCCCCcchhhh--hcCCCCCC------------CCHHHH
Q 020084 120 E-CPL-KVSCADIVALSAREGIVMLGG-----PRIPIKTGRRDSRVSYLAEV--EKFIPNHN------------DSIATA 178 (331)
Q Consensus 120 ~-cp~-~VScADilalAar~AV~~~GG-----P~~~v~~GR~D~~~s~~~~~--~~~lP~p~------------~~~~~l 178 (331)
. -++ .||.||+|+||+..|||.+|| |.+++..||.|.+....... ...+|.+. ...+.|
T Consensus 91 ~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~L 170 (297)
T cd08200 91 SQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEML 170 (297)
T ss_pred cccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHH
Confidence 2 122 699999999999999999999 99999999999987633211 11345432 235789
Q ss_pred HHHHHHCCCChHHHHHHhhccc-cccccccccccccccCCCCCCCCHHHHHHhhcCCCCCCCCCCCcccccCCCCCCCcc
Q 020084 179 LSVFNSIGIDDEGVVALYAGAH-SVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMIL 257 (331)
Q Consensus 179 ~~~F~~~Gl~~~dlVaL~sGaH-TiG~ahc~~f~~Rl~~~~Dp~ld~~~~~~L~~~Cp~~~~~~~~~~~~~lD~~tp~~F 257 (331)
++.|.++|||++||||| +||| ++|..|..++ . +.| ..+|.+|
T Consensus 171 rd~f~rlglsd~EmvaL-~Gg~r~lG~~~~~s~-----------------------------~-G~w------T~~p~~f 213 (297)
T cd08200 171 VDKAQLLTLTAPEMTVL-VGGLRVLGANYGGSK-----------------------------H-GVF------TDRPGVL 213 (297)
T ss_pred HHHHHhCCCChHHHhhe-ecchhhcccCCCCCC-----------------------------C-CCC------cCCCCcc
Confidence 99999999999999999 9997 6998874321 1 123 2689999
Q ss_pred ChHHHHHhhccc--------------------c-----cccchhhhccCCCCHHHHHHhhcC--hHHHHHHHHHHHHHHH
Q 020084 258 DNNYYKNIINHK--------------------G-----LLIVDQQLASDPRTTPFVQKMAAN--NSYFHEQFSRAIALLS 310 (331)
Q Consensus 258 Dn~Yy~~l~~~~--------------------g-----lL~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am~Km~ 310 (331)
||.||+||+... | .+.+|.+|.+|++.|++|+.||.| ++.||+||++||.||+
T Consensus 214 ~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~Klm 293 (297)
T cd08200 214 TNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWTKVM 293 (297)
T ss_pred ccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 999999999520 1 267899999999999999999998 9999999999999999
Q ss_pred hCC
Q 020084 311 ENN 313 (331)
Q Consensus 311 ~lg 313 (331)
++.
T Consensus 294 eld 296 (297)
T cd08200 294 NLD 296 (297)
T ss_pred hcC
Confidence 874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=6.4e-34 Score=293.93 Aligned_cols=220 Identities=16% Similarity=0.251 Sum_probs=177.9
Q ss_pred HHHHHHHHHH---HHhcCCchhhHHHHHhcccCc-------ccCCCc-eecccCCCCccccccccC--CCCc-hhHHHHH
Q 020084 47 EIIKQQVVQL---YYKHGNTAVSWVRNLFHDCAV-------KSCDAS-LLLETVTGVASEQASERS--FGMR-NFKYVST 112 (331)
Q Consensus 47 ~iVr~~v~~~---~~~~~~~aa~llRL~FHDcfv-------~GcDgS-illd~~~~~~~E~~~~~N--~~L~-g~~~Id~ 112 (331)
++|+++|.+. +.......+.||||+||++.+ ||++|+ |.|. +|++++.| .+|. .+++++.
T Consensus 428 ~~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~------pe~~w~~N~p~gL~~vl~~Le~ 501 (716)
T TIGR00198 428 TLSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE------PQKNWPVNEPTRLAKVLAVLEK 501 (716)
T ss_pred hhHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc------hhcCcccCCHHHHHHHHHHHHH
Confidence 3456666654 445677889999999999997 899998 7764 79999999 6885 8999999
Q ss_pred HHHHHHhhCCCccChhhHHHhhcchhhhhc---CCC--ccccccCCCCCCCcchhhhhcCCC---CC------------C
Q 020084 113 IKAALEAECPLKVSCADIVALSAREGIVML---GGP--RIPIKTGRRDSRVSYLAEVEKFIP---NH------------N 172 (331)
Q Consensus 113 iK~~le~~cp~~VScADilalAar~AV~~~---GGP--~~~v~~GR~D~~~s~~~~~~~~lP---~p------------~ 172 (331)
||+++.. ..||.||+|+||+..|||.+ ||| .+++..||.|.+.... +++...| .+ .
T Consensus 502 Ik~~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~~ 577 (716)
T TIGR00198 502 IQAEFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-DAESFTPLEPIADGFRNYLKRDYAV 577 (716)
T ss_pred HHHHcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-CccccccCCCCCcccchhccccccC
Confidence 9999842 27999999999999999999 898 5899999999987642 2222222 11 1
Q ss_pred CCHHHHHHHHHHCCCChHHHHHHhhcc-ccccccccccccccccCCCCCCCCHHHHHHhhcCCCCCCCCCCCcccccCCC
Q 020084 173 DSIATALSVFNSIGIDDEGVVALYAGA-HSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDR 251 (331)
Q Consensus 173 ~~~~~l~~~F~~~Gl~~~dlVaL~sGa-HTiG~ahc~~f~~Rl~~~~Dp~ld~~~~~~L~~~Cp~~~~~~~~~~~~~lD~ 251 (331)
...+.|++.|..+|||++||||| +|| |++|+.|..++ . +.+ .
T Consensus 578 ~~~~~l~d~a~~lglt~~EmvaL-~Gg~r~lG~~~~~s~-----------------------------~-G~~------T 620 (716)
T TIGR00198 578 TPEELLLDKAQLLTLTAPEMTVL-IGGMRVLGANHGGSK-----------------------------H-GVF------T 620 (716)
T ss_pred CHHHHHHHHHHhCCCChHHHHhe-ecchhhccccCCCCC-----------------------------C-CCC------c
Confidence 24567899999999999999999 998 59999985321 1 122 1
Q ss_pred CCCCccChHHHHHhhccc--------------------c---c--ccchhhhccCCCCHHHHHHhhcCh--HHHHHHHHH
Q 020084 252 ETPMILDNNYYKNIINHK--------------------G---L--LIVDQQLASDPRTTPFVQKMAANN--SYFHEQFSR 304 (331)
Q Consensus 252 ~tp~~FDn~Yy~~l~~~~--------------------g---l--L~SD~~L~~d~~t~~~V~~yA~d~--~~F~~~Fa~ 304 (331)
.+|.+|||.||+||+... | + ..+|.+|.+|++.|++|+.||.|+ +.|++||++
T Consensus 621 ~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~~ 700 (716)
T TIGR00198 621 DRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDFVA 700 (716)
T ss_pred CCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHHHH
Confidence 689999999999999621 2 2 268999999999999999999997 899999999
Q ss_pred HHHHHHhCC
Q 020084 305 AIALLSENN 313 (331)
Q Consensus 305 Am~Km~~lg 313 (331)
||.|+++++
T Consensus 701 Aw~Klm~ld 709 (716)
T TIGR00198 701 AWTKVMNLD 709 (716)
T ss_pred HHHHHHhCC
Confidence 999999987
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1.6e-33 Score=289.53 Aligned_cols=219 Identities=16% Similarity=0.260 Sum_probs=180.6
Q ss_pred HHHHHHHHhcCCchhhHHHHHhcccCc-------ccCCCc-eecccCCCCccccccccCC--CCc-hhHHHHHHHHHHHh
Q 020084 51 QQVVQLYYKHGNTAVSWVRNLFHDCAV-------KSCDAS-LLLETVTGVASEQASERSF--GMR-NFKYVSTIKAALEA 119 (331)
Q Consensus 51 ~~v~~~~~~~~~~aa~llRL~FHDcfv-------~GcDgS-illd~~~~~~~E~~~~~N~--~L~-g~~~Id~iK~~le~ 119 (331)
..+++.+....-..+.|||++||++.+ +|++|+ |.|. +|++++.|. +|. .+++++.||++++.
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~------Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~ 515 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNEPAQLAKVLAVLEGIQAEFNA 515 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc------cccCccccCHHHHHHHHHHHHHHHHHHhh
Confidence 556677777778899999999999997 899998 8775 799999999 886 89999999999965
Q ss_pred hCC--CccChhhHHHhhcchhhhhc---CC--CccccccCCCCCCCcchhhhh---cCCCCCC------------CCHHH
Q 020084 120 ECP--LKVSCADIVALSAREGIVML---GG--PRIPIKTGRRDSRVSYLAEVE---KFIPNHN------------DSIAT 177 (331)
Q Consensus 120 ~cp--~~VScADilalAar~AV~~~---GG--P~~~v~~GR~D~~~s~~~~~~---~~lP~p~------------~~~~~ 177 (331)
.-. ..||.||+|+||+..|||.+ || |.+++..||.|.+.... +++ ..+|.+. ...+.
T Consensus 516 ~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~t-d~esf~~l~P~Adgfrny~~~~~~~~~e~~ 594 (726)
T PRK15061 516 AQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQT-DVESFAVLEPKADGFRNYLKKGYSVSPEEL 594 (726)
T ss_pred ccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCC-CcccccccCCCCccccccccccCCCCHHHH
Confidence 322 36999999999999999998 68 99999999999987532 222 1456543 13478
Q ss_pred HHHHHHHCCCChHHHHHHhhccc-cccccccccccccccCCCCCCCCHHHHHHhhcCCCCCCCCCCCcccccCCCCCCCc
Q 020084 178 ALSVFNSIGIDDEGVVALYAGAH-SVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMI 256 (331)
Q Consensus 178 l~~~F~~~Gl~~~dlVaL~sGaH-TiG~ahc~~f~~Rl~~~~Dp~ld~~~~~~L~~~Cp~~~~~~~~~~~~~lD~~tp~~ 256 (331)
|++.|.++|||++||||| +||| ++|..|-.+ +. +.+ ..+|.+
T Consensus 595 L~d~a~~lglt~~EmvaL-~Gg~r~Lg~~~~~S-----------------------------~~-G~~------T~~p~~ 637 (726)
T PRK15061 595 LVDKAQLLTLTAPEMTVL-VGGLRVLGANYGGS-----------------------------KH-GVF------TDRPGV 637 (726)
T ss_pred HHHHHHhCCCChHHHhhe-ecchhhcccCCCCC-----------------------------CC-CCC------cCCCCc
Confidence 999999999999999999 9997 788887431 11 122 168999
Q ss_pred cChHHHHHhhccc--------------------c---c--ccchhhhccCCCCHHHHHHhhcC--hHHHHHHHHHHHHHH
Q 020084 257 LDNNYYKNIINHK--------------------G---L--LIVDQQLASDPRTTPFVQKMAAN--NSYFHEQFSRAIALL 309 (331)
Q Consensus 257 FDn~Yy~~l~~~~--------------------g---l--L~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am~Km 309 (331)
|||.||+||+... | + +.+|..|.+|++.|++|+.||.| ++.|++||++||.|+
T Consensus 638 fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kv 717 (726)
T PRK15061 638 LTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWTKV 717 (726)
T ss_pred cccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 9999999999521 1 1 47899999999999999999999 999999999999999
Q ss_pred HhCC
Q 020084 310 SENN 313 (331)
Q Consensus 310 ~~lg 313 (331)
++++
T Consensus 718 meld 721 (726)
T PRK15061 718 MNLD 721 (726)
T ss_pred HhCC
Confidence 9986
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.2e-30 Score=254.67 Aligned_cols=255 Identities=18% Similarity=0.251 Sum_probs=198.1
Q ss_pred HHHHHHHHHHHHhcC--------CchhhHHHHHhcccCc-------ccCCCceecccCCCCccccccccCCCCc-hhHHH
Q 020084 47 EIIKQQVVQLYYKHG--------NTAVSWVRNLFHDCAV-------KSCDASLLLETVTGVASEQASERSFGMR-NFKYV 110 (331)
Q Consensus 47 ~iVr~~v~~~~~~~~--------~~aa~llRL~FHDcfv-------~GcDgSilld~~~~~~~E~~~~~N~~L~-g~~~I 110 (331)
..|+.++...+.... ..++.+|||+||-+.+ +|..+. ..++.++.++|.|.+|+ ++.++
T Consensus 70 ~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G-----~qRFaPlnSWPDN~nLDKarRLL 144 (730)
T COG0376 70 AAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGG-----QQRFAPLNSWPDNANLDKARRLL 144 (730)
T ss_pred HHHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCC-----ceecccccCCCcccchHHHHHHh
Confidence 467788888877653 4789999999999987 344332 23467899999999997 99999
Q ss_pred HHHHHHHHhhCCCccChhhHHHhhcchhhhhcCCCccccccCCCCCCCcchh----------------------------
Q 020084 111 STIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLA---------------------------- 162 (331)
Q Consensus 111 d~iK~~le~~cp~~VScADilalAar~AV~~~GGP~~~v~~GR~D~~~s~~~---------------------------- 162 (331)
..||+++ +.++|+||+|.||+..|++.+|++.+.+..||.|-..+...
T Consensus 145 WPIKkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~Plaav 220 (730)
T COG0376 145 WPIKKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAV 220 (730)
T ss_pred hhHhHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhh
Confidence 9999998 45899999999999999999999999999999998766540
Q ss_pred ---------hhhcCCCCCCCCHHHHHHHHHHCCCChHHHHHHhhccccccccccccccccccCCCCCCCCHHHHH--Hhh
Q 020084 163 ---------EVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAE--YLK 231 (331)
Q Consensus 163 ---------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaL~sGaHTiG~ahc~~f~~Rl~~~~Dp~ld~~~~~--~L~ 231 (331)
+-++..|+|..+..+++..|++|+++++|.||||.||||+|.+|-..-.+-+ +++|.--+-=.+ -++
T Consensus 221 qMGLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~v--g~ePe~a~ie~qGlGW~ 298 (730)
T COG0376 221 QMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNV--GPEPEAAPIEQQGLGWA 298 (730)
T ss_pred eeeeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhc--CCCccccchhhhccccc
Confidence 1124589999999999999999999999999999999999999976532222 245542221111 234
Q ss_pred cCCCCCCCCCCCc--ccccCCCCCCCccChHHHHHhhccc-----------------------------------ccccc
Q 020084 232 GRCPTPDPDPDAV--VYARNDRETPMILDNNYYKNIINHK-----------------------------------GLLIV 274 (331)
Q Consensus 232 ~~Cp~~~~~~~~~--~~~~lD~~tp~~FDn~Yy~~l~~~~-----------------------------------glL~S 274 (331)
++|....|.+.-+ ..+.. ..||++|||+||.+|.... .||++
T Consensus 299 ~~~g~G~G~dtitsGlE~~W-t~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~Mltt 377 (730)
T COG0376 299 NTYGSGKGPDTITSGLEGAW-TTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMMLTT 377 (730)
T ss_pred cccCCCcCcccccccccccC-CCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCceeecc
Confidence 4554212221111 00112 2689999999999998641 48999
Q ss_pred hhhhccCCCCHHHHHHhhcChHHHHHHHHHHHHHHHhCC
Q 020084 275 DQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSENN 313 (331)
Q Consensus 275 D~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lg 313 (331)
|.+|.-||..+.|.++|.+|++.|.+.|++||.||..-.
T Consensus 378 DlaLr~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 378 DLALRFDPEYEKISRRFLEDPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred chhhhcChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999998754
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.42 E-value=6.9e-13 Score=132.51 Aligned_cols=216 Identities=16% Similarity=0.236 Sum_probs=156.2
Q ss_pred HHHHHHHHhcCCchhhHHHHHhcccCc-------ccCCCc-eecccCCCCccccccccCC--CCc-hhHHHHHHHHHHHh
Q 020084 51 QQVVQLYYKHGNTAVSWVRNLFHDCAV-------KSCDAS-LLLETVTGVASEQASERSF--GMR-NFKYVSTIKAALEA 119 (331)
Q Consensus 51 ~~v~~~~~~~~~~aa~llRL~FHDcfv-------~GcDgS-illd~~~~~~~E~~~~~N~--~L~-g~~~Id~iK~~le~ 119 (331)
..+++.+....-....|+-.+|-.+.+ +|.+|. |.|. +.++++.|. -|. -+.+++.|.+..+
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa------PqkdWevN~P~~l~kvl~~le~iq~~fn- 524 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNQPAELAKVLAVLEKIQKEFN- 524 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec------ccccCCCCCHHHHHHHHHHHHHHHHHhc-
Confidence 456677777788899999999998886 688886 6664 579999997 343 6888899988886
Q ss_pred hCCCccChhhHHHhhcchhhhhc---CCCc--cccccCCCCCCCcchhhhhc-CC--CCC------------CCCHHHHH
Q 020084 120 ECPLKVSCADIVALSAREGIVML---GGPR--IPIKTGRRDSRVSYLAEVEK-FI--PNH------------NDSIATAL 179 (331)
Q Consensus 120 ~cp~~VScADilalAar~AV~~~---GGP~--~~v~~GR~D~~~s~~~~~~~-~l--P~p------------~~~~~~l~ 179 (331)
..||.||+|.|++..||+.+ +|-. +|+..||.|+...... ++. .. |-. .....-|+
T Consensus 525 ---kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtD-v~sf~~LeP~aDGfRNy~~~~~~~~pe~~Lv 600 (730)
T COG0376 525 ---KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTD-VESFAVLEPIADGFRNYVKKDYVLTPEELLV 600 (730)
T ss_pred ---CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcc-hhhhhcccccchhhhhhccCCCcCCHHHHHH
Confidence 46999999999999999885 5654 5778999999765432 211 11 211 12244577
Q ss_pred HHHHHCCCChHHHHHHhhccccccccccccccccccCCCCCCCCHHHHHHhhcCCCCCCCCCCCcccccCCCCCCCccCh
Q 020084 180 SVFNSIGIDDEGVVALYAGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDN 259 (331)
Q Consensus 180 ~~F~~~Gl~~~dlVaL~sGaHTiG~ahc~~f~~Rl~~~~Dp~ld~~~~~~L~~~Cp~~~~~~~~~~~~~lD~~tp~~FDn 259 (331)
+.-+-.+||..||++||-|-.-+|.-+. ..... |.- ..|..+.|
T Consensus 601 DkAqlL~LtapemtVLiGGlRvLg~n~g--------------------------------~s~~G--VfT--~~pg~Ltn 644 (730)
T COG0376 601 DKAQLLTLTAPEMTVLIGGLRVLGANYG--------------------------------GSKHG--VFT--DRPGVLTN 644 (730)
T ss_pred HHHHHhccCCccceEEEcceEeeccCCC--------------------------------CCccc--eec--cCcccccc
Confidence 8888899999999999444344443321 10111 222 36778888
Q ss_pred HHHHHhhccc--------------------cc-----ccchhhhccCCCCHHHHHHhhcC--hHHHHHHHHHHHHHHHhC
Q 020084 260 NYYKNIINHK--------------------GL-----LIVDQQLASDPRTTPFVQKMAAN--NSYFHEQFSRAIALLSEN 312 (331)
Q Consensus 260 ~Yy~~l~~~~--------------------gl-----L~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am~Km~~l 312 (331)
.||.||+.-. |- -..|..+-+++..|.+.+.||.+ ++.|.+||+.||.|+.++
T Consensus 645 dFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn~ 724 (730)
T COG0376 645 DFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKVMNL 724 (730)
T ss_pred hhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc
Confidence 8888887531 21 24677777888999999999975 889999999999999987
Q ss_pred C
Q 020084 313 N 313 (331)
Q Consensus 313 g 313 (331)
.
T Consensus 725 D 725 (730)
T COG0376 725 D 725 (730)
T ss_pred c
Confidence 4
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=56.47 E-value=1.3e+02 Score=29.83 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=36.9
Q ss_pred hcCCCccccccCCCCCCCcchhhhhcCCCCC---CCCHHHHHHHHHHCCCC----------hHHHHHHhhcccc
Q 020084 141 MLGGPRIPIKTGRRDSRVSYLAEVEKFIPNH---NDSIATALSVFNSIGID----------DEGVVALYAGAHS 201 (331)
Q Consensus 141 ~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p---~~~~~~l~~~F~~~Gl~----------~~dlVaL~sGaHT 201 (331)
.+|-..+..+.||-+...-.+.......+.. -..+.++.+.|++.|+. .+|+..| +|+|.
T Consensus 179 eAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qi~~l-aG~D~ 251 (333)
T PTZ00411 179 QAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEILEL-AGCDK 251 (333)
T ss_pred HcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHHHHHH-HCCCE
Confidence 3577788999999965432211111111211 23567788888888864 5777787 88774
No 20
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=45.55 E-value=18 Score=28.37 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhCCC
Q 020084 297 YFHEQFSRAIALLSENNP 314 (331)
Q Consensus 297 ~F~~~Fa~Am~Km~~lgv 314 (331)
.....|..||.||+.+|-
T Consensus 2 ~m~~~F~~am~KlavLG~ 19 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGH 19 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS
T ss_pred hHHHHHHHHHHHHHHhcC
Confidence 356889999999999864
No 21
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=34.24 E-value=3.4e+02 Score=27.42 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=44.4
Q ss_pred hcCCCccccccCCCCCCCcchhhhhcCCCCCC----CCHHHHHHHHHHCCCC----------hHHHHHHhhccccccccc
Q 020084 141 MLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHN----DSIATALSVFNSIGID----------DEGVVALYAGAHSVGRVH 206 (331)
Q Consensus 141 ~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~----~~~~~l~~~F~~~Gl~----------~~dlVaL~sGaHTiG~ah 206 (331)
.+|-..+..+.||-|........ ...+|... ..+.++...|++.|+. ..++..| +|+|.+
T Consensus 173 eAGa~~ISPfVgRi~dw~~~~~g-~~~~~~~~dpGv~~v~~i~~~~~~~~~~T~Im~ASfRn~~~v~~l-aG~d~~---- 246 (391)
T PRK12309 173 EAGVTLISPFVGRILDWYKKETG-RDSYPGAEDPGVQSVTQIYNYYKKFGYKTEVMGASFRNIGEIIEL-AGCDLL---- 246 (391)
T ss_pred HcCCCEEEeecchhhhhhhhccC-CCccccccchHHHHHHHHHHHHHhcCCCcEEEecccCCHHHHHHH-HCCCee----
Confidence 35778899999998764322111 11244332 2477888888888764 5666666 666632
Q ss_pred cccccccccCCCCCCCCHHHHHHhhc
Q 020084 207 CVNLVHRLYPTVDPTLDPVYAEYLKG 232 (331)
Q Consensus 207 c~~f~~Rl~~~~Dp~ld~~~~~~L~~ 232 (331)
++.|....+|..
T Consensus 247 --------------Ti~p~ll~~L~~ 258 (391)
T PRK12309 247 --------------TISPKLLEQLRS 258 (391)
T ss_pred --------------eCCHHHHHHHHh
Confidence 456666666654
No 22
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=34.24 E-value=3.9e+02 Score=26.23 Aligned_cols=73 Identities=21% Similarity=0.177 Sum_probs=44.5
Q ss_pred hhcCCCccccccCCCCCCCcchhhhhcCCC----CCCCCHHHHHHHHHHCCCC----------hHHHHHHhhcccccccc
Q 020084 140 VMLGGPRIPIKTGRRDSRVSYLAEVEKFIP----NHNDSIATALSVFNSIGID----------DEGVVALYAGAHSVGRV 205 (331)
Q Consensus 140 ~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP----~p~~~~~~l~~~F~~~Gl~----------~~dlVaL~sGaHTiG~a 205 (331)
..+|-..+..+.||-|-........ ...+ ++-..+.++.+.|++.|+. .+|+.+| .|+|.+
T Consensus 166 a~AGa~~ISPFVgRi~dw~~~~~g~-~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qv~~l-aG~d~~--- 240 (317)
T TIGR00874 166 AEAKVTLISPFVGRILDWYKAATGK-KEYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASFRNKEEILAL-AGCDRL--- 240 (317)
T ss_pred HHcCCCEEEeecchHhHhhhhccCc-cccccccCchHHHHHHHHHHHHHcCCCcEEEeeccCCHHHHHHH-HCCCeE---
Confidence 4458888999999987632211100 0111 1234677888889888874 5666776 766532
Q ss_pred ccccccccccCCCCCCCCHHHHHHhhc
Q 020084 206 HCVNLVHRLYPTVDPTLDPVYAEYLKG 232 (331)
Q Consensus 206 hc~~f~~Rl~~~~Dp~ld~~~~~~L~~ 232 (331)
++.|....+|..
T Consensus 241 ---------------Ti~p~ll~~L~~ 252 (317)
T TIGR00874 241 ---------------TISPALLDELKE 252 (317)
T ss_pred ---------------eCCHHHHHHHHh
Confidence 456666666654
No 23
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.01 E-value=1e+02 Score=26.22 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=16.6
Q ss_pred HHHHHHHHCC-CChHHHHHHhhccc
Q 020084 177 TALSVFNSIG-IDDEGVVALYAGAH 200 (331)
Q Consensus 177 ~l~~~F~~~G-l~~~dlVaL~sGaH 200 (331)
.+++.-+..| +|..||+++ .|+|
T Consensus 16 rIvElVRe~GRiTi~ql~~~-TGas 39 (127)
T PF06163_consen 16 RIVELVREHGRITIKQLVAK-TGAS 39 (127)
T ss_pred HHHHHHHHcCCccHHHHHHH-HCCC
Confidence 4555556666 688999998 7765
No 24
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=21.65 E-value=74 Score=24.86 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=17.6
Q ss_pred HHHHHHHHHCCCChHHHHHHhhccc
Q 020084 176 ATALSVFNSIGIDDEGVVALYAGAH 200 (331)
Q Consensus 176 ~~l~~~F~~~Gl~~~dlVaL~sGaH 200 (331)
+.|-..|.+.||+.+||-.| +-+.
T Consensus 11 DtLs~iF~~~gls~~dl~~v-~~~~ 34 (85)
T PF04225_consen 11 DTLSTIFRRAGLSASDLYAV-LEAD 34 (85)
T ss_dssp --HHHHHHHTT--HHHHHHH-HHHG
T ss_pred CcHHHHHHHcCCCHHHHHHH-Hhcc
Confidence 57889999999999999999 7554
Done!