Query 020086
Match_columns 331
No_of_seqs 242 out of 2071
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 06:54:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 4.3E-38 9.3E-43 295.1 32.1 267 63-330 12-283 (455)
2 PRK00187 multidrug efflux prot 100.0 3.6E-35 7.9E-40 277.1 33.7 266 63-329 5-277 (464)
3 PRK10367 DNA-damage-inducible 100.0 7.2E-35 1.6E-39 273.0 32.4 265 64-330 5-274 (441)
4 PRK10189 MATE family multidrug 100.0 1.6E-33 3.4E-38 266.4 34.0 265 64-329 25-300 (478)
5 PRK09575 vmrA multidrug efflux 100.0 8.3E-33 1.8E-37 260.6 31.0 264 65-329 9-276 (453)
6 PRK01766 multidrug efflux prot 100.0 5.6E-32 1.2E-36 255.6 33.0 268 61-329 5-280 (456)
7 TIGR00797 matE putative efflux 100.0 6.1E-27 1.3E-31 213.1 31.2 253 76-329 1-257 (342)
8 KOG1347 Uncharacterized membra 100.0 1.4E-27 3E-32 222.9 26.2 267 61-328 21-289 (473)
9 PRK00187 multidrug efflux prot 99.9 3.2E-25 6.8E-30 209.6 25.6 208 61-269 229-443 (464)
10 PRK01766 multidrug efflux prot 99.9 3.3E-24 7.2E-29 202.6 25.5 207 62-269 233-441 (456)
11 COG0534 NorM Na+-driven multid 99.9 7E-24 1.5E-28 199.1 25.8 211 60-272 233-445 (455)
12 PRK10189 MATE family multidrug 99.9 2.2E-23 4.7E-28 197.4 28.1 211 62-273 253-465 (478)
13 PRK09575 vmrA multidrug efflux 99.9 3.2E-23 6.9E-28 195.5 26.0 206 61-269 227-435 (453)
14 TIGR01695 mviN integral membra 99.9 1.4E-21 3.1E-26 186.9 29.1 233 63-304 218-455 (502)
15 PRK10367 DNA-damage-inducible 99.9 6.6E-20 1.4E-24 172.1 27.1 199 65-270 229-431 (441)
16 PF03023 MVIN: MviN-like prote 99.9 4.2E-19 9E-24 166.9 29.2 207 63-271 193-404 (451)
17 TIGR01695 mviN integral membra 99.9 5.6E-19 1.2E-23 169.0 30.6 254 70-329 2-264 (502)
18 TIGR02900 spore_V_B stage V sp 99.9 3.1E-19 6.8E-24 170.1 28.0 243 71-317 2-254 (488)
19 PRK15099 O-antigen translocase 99.9 7.2E-19 1.6E-23 164.3 27.0 251 70-329 3-257 (416)
20 COG0728 MviN Uncharacterized m 99.8 8E-18 1.7E-22 156.9 30.6 234 63-304 227-465 (518)
21 TIGR02900 spore_V_B stage V sp 99.8 2.5E-18 5.5E-23 163.9 25.5 204 61-269 218-433 (488)
22 PF01554 MatE: MatE; InterPro 99.8 7.8E-21 1.7E-25 154.2 6.9 160 76-236 1-162 (162)
23 PRK15099 O-antigen translocase 99.8 4.5E-17 9.8E-22 152.2 25.2 202 61-269 208-411 (416)
24 PRK10459 colanic acid exporter 99.8 3.1E-16 6.7E-21 149.8 28.5 201 63-269 202-404 (492)
25 COG2244 RfbX Membrane protein 99.7 5.6E-15 1.2E-19 140.7 26.3 187 63-255 208-396 (480)
26 PF03023 MVIN: MviN-like prote 99.6 1.8E-12 4E-17 122.1 28.5 225 98-327 5-237 (451)
27 TIGR00797 matE putative efflux 99.5 1E-12 2.2E-17 119.5 16.2 132 61-193 209-341 (342)
28 PF01943 Polysacc_synt: Polysa 99.4 4E-10 8.6E-15 98.7 27.9 243 71-328 2-246 (273)
29 COG0728 MviN Uncharacterized m 99.4 9.6E-10 2.1E-14 103.2 30.9 257 68-327 7-271 (518)
30 PRK10459 colanic acid exporter 99.4 5.7E-10 1.2E-14 106.7 26.5 240 68-327 5-247 (492)
31 KOG1347 Uncharacterized membra 99.3 4.5E-12 9.7E-17 119.0 10.4 204 64-268 243-450 (473)
32 PF13440 Polysacc_synt_3: Poly 99.2 2.7E-08 5.9E-13 86.1 27.8 221 87-329 3-225 (251)
33 COG2244 RfbX Membrane protein 99.1 3.3E-08 7.1E-13 94.3 24.5 244 67-325 5-251 (480)
34 PF07260 ANKH: Progressive ank 98.9 6.1E-06 1.3E-10 71.8 27.1 251 66-323 9-271 (345)
35 PF14667 Polysacc_synt_C: Poly 98.9 1.1E-07 2.4E-12 75.4 15.1 79 190-270 2-80 (146)
36 PF04506 Rft-1: Rft protein; 98.7 3E-06 6.4E-11 81.2 21.6 201 68-269 253-469 (549)
37 KOG2864 Nuclear division RFT1 98.5 0.00013 2.7E-09 66.6 23.3 198 70-269 241-448 (530)
38 PF01943 Polysacc_synt: Polysa 97.6 0.00033 7E-09 61.1 9.3 72 64-136 201-273 (273)
39 PF13440 Polysacc_synt_3: Poly 96.5 0.017 3.8E-07 49.6 9.1 67 69-135 184-251 (251)
40 COG4267 Predicted membrane pro 92.8 7.5 0.00016 35.5 23.0 138 117-269 73-210 (467)
41 COG4267 Predicted membrane pro 84.2 34 0.00074 31.5 12.9 117 140-260 318-436 (467)
42 TIGR01299 synapt_SV2 synaptic 77.3 89 0.0019 31.9 23.3 20 120-139 213-232 (742)
43 PRK03612 spermidine synthase; 53.6 2.2E+02 0.0048 27.7 20.8 46 220-267 152-197 (521)
44 PF14184 YrvL: Regulatory prot 52.8 1.1E+02 0.0023 23.7 13.5 107 152-260 8-115 (132)
45 PF02487 CLN3: CLN3 protein; 48.9 67 0.0015 30.0 6.9 31 57-87 232-262 (402)
46 PF04505 Dispanin: Interferon- 45.6 1E+02 0.0022 21.5 5.9 33 128-160 40-72 (82)
47 PF03904 DUF334: Domain of unk 42.4 1.2E+02 0.0025 25.7 6.6 38 164-201 166-212 (230)
48 PF07260 ANKH: Progressive ank 37.6 1.1E+02 0.0024 27.6 6.1 35 66-100 233-268 (345)
49 KOG0474 Cl- channel CLC-7 and 36.6 2.4E+02 0.0052 28.0 8.5 53 207-259 172-228 (762)
50 TIGR00927 2A1904 K+-dependent 35.7 69 0.0015 33.3 5.1 39 123-161 980-1018(1096)
51 PF02592 DUF165: Uncharacteriz 33.8 2.3E+02 0.0049 22.1 12.1 82 123-211 8-89 (145)
52 PF04506 Rft-1: Rft protein; 33.2 4.8E+02 0.01 25.6 18.3 41 72-112 5-46 (549)
53 PF08627 CRT-like: CRT-like; 31.4 2.2E+02 0.0048 21.7 6.0 29 69-97 50-78 (130)
54 KOG3880 Predicted small molecu 31.0 1.8E+02 0.0039 26.5 6.3 37 53-89 232-268 (409)
55 PF05975 EcsB: Bacterial ABC t 30.0 4.5E+02 0.0097 24.3 16.6 41 139-179 88-130 (386)
56 PTZ00370 STEVOR; Provisional 29.4 80 0.0017 27.8 3.9 29 243-271 254-282 (296)
57 TIGR01478 STEVOR variant surfa 28.8 73 0.0016 28.0 3.5 33 243-276 258-290 (295)
58 PRK10739 putative antibiotic t 28.5 3.4E+02 0.0075 22.5 11.3 64 119-187 13-76 (197)
59 PF01102 Glycophorin_A: Glycop 28.3 71 0.0015 24.3 3.0 6 264-269 85-90 (122)
60 COG4536 CorB Putative Mg2+ and 27.9 3.3E+02 0.0072 25.2 7.6 96 73-179 59-156 (423)
61 TIGR00427 membrane protein, Ma 27.9 3.6E+02 0.0077 22.4 9.2 63 120-187 17-79 (201)
62 PF03176 MMPL: MMPL family; I 25.7 4.5E+02 0.0097 23.5 8.5 21 290-310 244-264 (333)
63 COG3808 OVP1 Inorganic pyropho 23.5 4.6E+02 0.01 25.5 7.9 54 212-265 288-353 (703)
64 KOG3249 Uncharacterized conser 22.7 4.1E+02 0.0088 21.3 6.4 10 102-111 149-158 (181)
65 PRK11111 hypothetical protein; 22.2 4.8E+02 0.01 22.0 9.2 63 120-187 20-82 (214)
66 PF05313 Pox_P21: Poxvirus P21 21.8 4.5E+02 0.0097 21.5 7.9 26 244-269 135-160 (189)
67 KOG2468 Dolichol kinase [Lipid 21.0 63 0.0014 30.4 1.8 34 118-151 415-448 (510)
68 TIGR02972 TMAO_torE trimethyla 20.9 2.2E+02 0.0048 17.6 5.3 13 166-178 32-44 (47)
69 PF04144 SCAMP: SCAMP family; 20.9 4.6E+02 0.01 21.3 11.3 116 130-251 16-134 (177)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=4.3e-38 Score=295.08 Aligned_cols=267 Identities=25% Similarity=0.354 Sum_probs=247.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcc
Q 020086 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (331)
Q Consensus 63 ~~~~~~~il~~~~P~~~~~~~~~l~~~i~~~~i~~lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~ 142 (331)
.++..|+++++++|++++++...+++.+|++++||+|++++|+.++++++...+ +.+..+++.+.++++||++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 556779999999999999999999999999999999999999999999997665 7789999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHH
Q 020086 143 MMGVYLQRSWIILITTALMLMF-MYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAV 221 (331)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 221 (331)
++++..+++++++++++++..+ .+++.++++.+++.++|+.+.+.+|+++..++.|+..++.++.+++|+.||++.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 9999999999999999977664 577999999999998999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-cC-CccchhHHHHHHHHHHHHHHHHHHHhhCCC--CCCCCCCCHHhHHHHHHHHHHHHHH
Q 020086 222 IAAVALLLHTILSWLLILK-LG-LGLVGAAVALNASWWFIDITRLLYIFSGAC--GPTWSGFSWKAFHSLWSFVRLSLAS 297 (331)
Q Consensus 222 ~~i~~~~~~i~l~~~li~~-~~-~G~~Gaa~a~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~p~ 297 (331)
.+++++++|+++||+|++. ++ +|+.|+++||.+++++.+++..+++++++. .....+..+.+++.+++++++|.|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 67 999999999999999999999999888653 2332344456778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchHhhhhhhcc
Q 020086 298 AVMLCVEIWYFMALILFAGYLKNAKLSVAGLSI 330 (331)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~g~~~~aa~~i~i 330 (331)
+++...+...+.+.+.+.+++|+..+|||+++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~ 283 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLGTVALAAYGIAL 283 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 999999999999999999999999999999863
No 2
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=3.6e-35 Score=277.14 Aligned_cols=266 Identities=21% Similarity=0.198 Sum_probs=239.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcc
Q 020086 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (331)
Q Consensus 63 ~~~~~~~il~~~~P~~~~~~~~~l~~~i~~~~i~~lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~ 142 (331)
++++.|+++++++|.+++++...+.+.+|+.+++++|++++++++++.++.+.+ ..+..|++++.++++||++|++|+|
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~~ 83 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDIE 83 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChh
Confidence 456789999999999999999999999999999999999999999999996665 6688999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH
Q 020086 143 MMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (331)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 222 (331)
++++..++++.+.++++++..++.++.++++.+++.|+|+.+.+.+|++++.++.|+..+....++++|+.||++.+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 163 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVI 163 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999988887766667799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc----CCccchhHHHHHHHHHHHHHHHHHHHhhCCCC--CC-CCCCCHHhHHHHHHHHHHHH
Q 020086 223 AAVALLLHTILSWLLILKL----GLGLVGAAVALNASWWFIDITRLLYIFSGACG--PT-WSGFSWKAFHSLWSFVRLSL 295 (331)
Q Consensus 223 ~i~~~~~~i~l~~~li~~~----~~G~~Gaa~a~~~s~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~l~~~~ 295 (331)
++++.++|+++||+|++.. ++|+.|+++|+.+++++..+...+++++++.+ .+ ++++.+.+++.+|+++++++
T Consensus 164 ~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~ 243 (464)
T PRK00187 164 SLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGL 243 (464)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhh
Confidence 9999999999999999853 48999999999999998887776666653321 11 22223456778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHhhhhhhc
Q 020086 296 ASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLS 329 (331)
Q Consensus 296 p~~~~~~~~~~~~~~~~~~~~~~g~~~~aa~~i~ 329 (331)
|.++++..+...+.+.+.+++++|+.++||++++
T Consensus 244 P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~ 277 (464)
T PRK00187 244 PIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIA 277 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 9999999999999999999999999999999875
No 3
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=7.2e-35 Score=273.01 Aligned_cols=265 Identities=18% Similarity=0.222 Sum_probs=236.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcc
Q 020086 64 LKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHI-STLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (331)
Q Consensus 64 ~~~~~~il~~~~P~~~~~~~~~l~~~i~~~~i~~l-g~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~ 142 (331)
+++.|+++++++|.+++++...+++.+|+.++|++ |++++|+++++.++.... ..+..+++.+.++++||++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 34568999999999999999999999999999997 677899999999996665 6688899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHH
Q 020086 143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAV 221 (331)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 221 (331)
++++..++++.++++++++..++ ..+.++++.+++.|+|+.+.+.+|++++.++.|+..+..+.++++|+.||++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999998887754 55889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhhCCCCCC--CCCCCHHh-HHHHHHHHHHHHHHH
Q 020086 222 IAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPT--WSGFSWKA-FHSLWSFVRLSLASA 298 (331)
Q Consensus 222 ~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~l~~~~p~~ 298 (331)
.++++.++|+++|+++++.+++|+.|+++||.+++++.+++..++++++++.+. ++.+ +++ ++..|+++++|.|.+
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~il~ig~P~~ 242 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEML-KTAWRGNFRRLLALNRDIM 242 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHh-hhhhHHHHHHHHHhCchHH
Confidence 999999999999999999889999999999999999999888777765322111 1111 112 246899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchHhhhhhhcc
Q 020086 299 VMLCVEIWYFMALILFAGYLKNAKLSVAGLSI 330 (331)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~g~~~~aa~~i~i 330 (331)
++...+...+.+.+.+++++|+.++||++++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~ 274 (441)
T PRK10367 243 LRSLLLQLCFGAITVLGARLGSDIIAVNAVLM 274 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999999999999999863
No 4
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=1.6e-33 Score=266.36 Aligned_cols=265 Identities=17% Similarity=0.228 Sum_probs=236.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcch
Q 020086 64 LKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDM 143 (331)
Q Consensus 64 ~~~~~~il~~~~P~~~~~~~~~l~~~i~~~~i~~lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~ 143 (331)
-+..|+++++++|.++++++..+.+.+|+.++|++|++++|+++++.++... .+.+..|++++.++++||++|++|+|+
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~-~~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMV-IMAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 3458999999999999999999999999999999999999999999999554 477899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 020086 144 MGVYLQRSWIILITTALMLMFM-YIFAQQILSLIG--QTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (331)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~--~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 220 (331)
+++..++++.++++++++.+++ +++.++++.+++ .|+|+.+.+.+|+++..++.|+..+..+.++++|+.||++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 9999999999999999888755 558899999984 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhc----CCccchhHHHHHHHHHHHHHHHHHHHhhCCC---CCCCCC-CCHHhHHHHHHHHH
Q 020086 221 VIAAVALLLHTILSWLLILKL----GLGLVGAAVALNASWWFIDITRLLYIFSGAC---GPTWSG-FSWKAFHSLWSFVR 292 (331)
Q Consensus 221 ~~~i~~~~~~i~l~~~li~~~----~~G~~Gaa~a~~~s~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~l~ 292 (331)
++++++.++|+++++++++.+ ++|+.|+|+|+.+++++..++..+++.++++ +.++++ +.+.+++.++++++
T Consensus 184 ~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 263 (478)
T PRK10189 184 LINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMG 263 (478)
T ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHH
Confidence 999999999999999999853 7999999999999999998887766654322 111222 11235778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHhhhhhhc
Q 020086 293 LSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLS 329 (331)
Q Consensus 293 ~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~aa~~i~ 329 (331)
+|+|.+++.......+.+.+.+++++|+.++||++++
T Consensus 264 iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~ 300 (478)
T PRK10189 264 IGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIA 300 (478)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 9999999999999999999999999999999999986
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=8.3e-33 Score=260.57 Aligned_cols=264 Identities=17% Similarity=0.197 Sum_probs=237.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcch
Q 020086 65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDM 143 (331)
Q Consensus 65 ~~~~~il~~~~P~~~~~~~~~l~~~i~~~~i~~-lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~ 143 (331)
+..|+++++++|.+++++...+++.+|+.++|+ +|++++++++++.++.... ..+..+++.+.+++++|++|+||+|+
T Consensus 9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~~ 87 (453)
T PRK09575 9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLEK 87 (453)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHHH
Confidence 456899999999999999999999999999999 5999999999999996655 56788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH
Q 020086 144 MGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (331)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 222 (331)
+++..+++++++++++++..++ +++.++++.+++.|+++.+.+.+|+++..++.|+..+.....+++|+.||++.++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 167 (453)
T PRK09575 88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL 167 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 9999999999999999888765 558999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhhCCCCCCCC-CCCHHhHHHHHHHHHHHHHHHHHH
Q 020086 223 AAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWS-GFSWKAFHSLWSFVRLSLASAVML 301 (331)
Q Consensus 223 ~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~p~~~~~ 301 (331)
++++.++|+++++++++.+++|+.|+++|+.+++++.+++..+++++++.+.+++ +..+.+++.+|+++++|+|..++.
T Consensus 168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~ 247 (453)
T PRK09575 168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMY 247 (453)
T ss_pred HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHH
Confidence 9999999999999999988999999999999999999998877776544332221 112345678899999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCc-hHhhhhhhc
Q 020086 302 CVEIWYFMALILFAGYLKN-AKLSVAGLS 329 (331)
Q Consensus 302 ~~~~~~~~~~~~~~~~~g~-~~~aa~~i~ 329 (331)
..+...+.+.+.+.+++|+ .++|+++++
T Consensus 248 ~~~~~~~~~~~~~~~~~g~~~~lAa~~i~ 276 (453)
T PRK09575 248 LYGSFVVALHNRLFMEYGSALTVGAYAIV 276 (453)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 9999999999999999996 579998875
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=5.6e-32 Score=255.56 Aligned_cols=268 Identities=21% Similarity=0.336 Sum_probs=239.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCC
Q 020086 61 REFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQ 140 (331)
Q Consensus 61 ~~~~~~~~~il~~~~P~~~~~~~~~l~~~i~~~~i~~lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~ 140 (331)
+..++.+|+++++++|.++++++..+.+.+|+.+++++|++++++++++.++.... ..+..|++.+..+.+||++|++|
T Consensus 5 ~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~ 83 (456)
T PRK01766 5 QKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGR 83 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCC
Confidence 44567789999999999999999999999999999999999999999999885544 66788999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHH
Q 020086 141 LDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVL 219 (331)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 219 (331)
++++++..++++.+++++++++.++ +.+.++++.+++.|+++.+.+..|+++.+++.|+..+..+.++++|+.||++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 163 (456)
T PRK01766 84 RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT 163 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 9999999999999999999887765 557789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----cCCccchhHHHHHHHHHHHHHHHHHHHhhCCCC---CCCCCCCHHhHHHHHHHHH
Q 020086 220 AVIAAVALLLHTILSWLLILK----LGLGLVGAAVALNASWWFIDITRLLYIFSGACG---PTWSGFSWKAFHSLWSFVR 292 (331)
Q Consensus 220 ~~~~i~~~~~~i~l~~~li~~----~~~G~~Gaa~a~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~ 292 (331)
++.++++.++|+++++++++. .++|+.|+++|+.+++++..++..+++++++.. +.+.++.+.+++.+|++++
T Consensus 164 ~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~ 243 (456)
T PRK01766 164 MVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLK 243 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHH
Confidence 999999999999999999964 258999999999999999999888777654321 1223333456778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHhhhhhhc
Q 020086 293 LSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLS 329 (331)
Q Consensus 293 ~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~aa~~i~ 329 (331)
+++|..++...+...+.+.+.+++++|+.++|+++++
T Consensus 244 l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~ 280 (456)
T PRK01766 244 LGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIA 280 (456)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 9999999999999999999999999999999999875
No 7
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.96 E-value=6.1e-27 Score=213.07 Aligned_cols=253 Identities=32% Similarity=0.531 Sum_probs=225.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcchHHHHHHHHHHHH
Q 020086 76 PAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIIL 155 (331)
Q Consensus 76 P~~~~~~~~~l~~~i~~~~i~~lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~ 155 (331)
|.++++++..+...+|+.+++++|++++++++++.++.... ..+..|++++..+.+++++|++|+|+.++..+.++.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999885554 66889999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHH
Q 020086 156 ITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILS 234 (331)
Q Consensus 156 ~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~ 234 (331)
.+++++.+++ +++.+++..+++.|++..+.+..|+++++++.++..+.....+++|+.||++.++..++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999888855 568899999998888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-hcC-CccchhHHHHHHHHHHHHHHHHHHHhhC-CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020086 235 WLLIL-KLG-LGLVGAAVALNASWWFIDITRLLYIFSG-ACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMAL 311 (331)
Q Consensus 235 ~~li~-~~~-~G~~Gaa~a~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~ 311 (331)
+++++ .++ +|+.|+++++.+++++..++..++.+++ +.+.+|+...+.+++.+|++++++.|..+..+..+..+.+.
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99998 777 8899999999999999999887777652 22223333334456789999999999999999999999999
Q ss_pred HHHHhcCCchHhhhhhhc
Q 020086 312 ILFAGYLKNAKLSVAGLS 329 (331)
Q Consensus 312 ~~~~~~~g~~~~aa~~i~ 329 (331)
..+++.+|+.++++++++
T Consensus 240 ~~i~~~~g~~~v~~~~~a 257 (342)
T TIGR00797 240 ALLVARLGSIALAAHQIA 257 (342)
T ss_pred HHHHHHcCcHHHHHHHHH
Confidence 999999999998887764
No 8
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.96 E-value=1.4e-27 Score=222.93 Aligned_cols=267 Identities=45% Similarity=0.745 Sum_probs=252.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCC
Q 020086 61 REFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQ 140 (331)
Q Consensus 61 ~~~~~~~~~il~~~~P~~~~~~~~~l~~~i~~~~i~~lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~ 140 (331)
+....+.|++++++.|..+..+.++..+.+++.++||+|+.++++.+++.+..+...+.+..|+..+..++++|++|+++
T Consensus 21 ~~~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~ 100 (473)
T KOG1347|consen 21 SQLVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKK 100 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccc
Confidence 33378889999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 020086 141 LDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (331)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 220 (331)
++....+.+++..+....+++..+++.+.++++..+++|+++...+..|.++..+..+.......++.++|+++++....
T Consensus 101 ~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 101 FTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHhHHHHHHHHHHHHHHHHH
Q 020086 221 VIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVM 300 (331)
Q Consensus 221 ~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~ 300 (331)
++.....++|+++++++++.+++|..|++++..+++|.....+..|.....+...|..+.++ +++++++++++.|.++|
T Consensus 181 ~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~m 259 (473)
T KOG1347|consen 181 VIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAVM 259 (473)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchhe
Confidence 99999999999999999999999999999999999999999999888875577888888887 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCch--Hhhhhhh
Q 020086 301 LCVEIWYFMALILFAGYLKNA--KLSVAGL 328 (331)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~g~~--~~aa~~i 328 (331)
.++|+|.+.+..++.|.+|+. ++++++|
T Consensus 260 iclE~w~~eil~l~~G~l~np~~~~~~~sI 289 (473)
T KOG1347|consen 260 ICLEWWAYEILVLLAGLLGNAKVSLASQSI 289 (473)
T ss_pred eHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 999999999999999999974 4444444
No 9
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.94 E-value=3.2e-25 Score=209.56 Aligned_cols=208 Identities=19% Similarity=0.172 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCC
Q 020086 61 REFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQ 140 (331)
Q Consensus 61 ~~~~~~~~~il~~~~P~~~~~~~~~l~~~i~~~~i~~lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~ 140 (331)
+.+++..|+++++++|.+++++.+.....+|+.+++++|++++++++++.++... .+.+..|++++.+++++|++|+||
T Consensus 229 ~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l-~~~~~~gi~~a~~~lvgq~~Ga~~ 307 (464)
T PRK00187 229 RPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSV-AFMVPVGLSYAVTMRVGQHYGAGR 307 (464)
T ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3456778999999999999999999999999999999999999999999999665 477999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCC--Ch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 020086 141 LDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQ--TQ---EISNAAGTFATWMIPQLFAYALNFPMVKFLQAQS 214 (331)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~--~~---~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g 214 (331)
+|++++..+.++.++.+.+++.+++ +++.+++.++|.. ++ |+.+.+..|+++.+++.++..++.+..+++||.|
T Consensus 308 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G 387 (464)
T PRK00187 308 LLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLK 387 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccC
Confidence 9999999999999999999887765 6689999999953 44 7899999999999999999999999999999999
Q ss_pred chhHHHHHHHHHH-HHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhh
Q 020086 215 KIMVLAVIAAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (331)
Q Consensus 215 ~~~~~~~~~i~~~-~~~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~~~~~~~~ 269 (331)
|++.+++.++++. ++++++++++++.+++|+.|+|+++.+++++..++....+++
T Consensus 388 ~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 388 DARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 999999999999889999999999999999988777655543
No 10
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.93 E-value=3.3e-24 Score=202.62 Aligned_cols=207 Identities=20% Similarity=0.170 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCc
Q 020086 62 EFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL 141 (331)
Q Consensus 62 ~~~~~~~~il~~~~P~~~~~~~~~l~~~i~~~~i~~lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~ 141 (331)
.+++..|+++++++|..++++.+.+...++..+++++|++++++++++.++.+.+ +.+..|++.+.++.++|++|+||+
T Consensus 233 ~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gl~~a~~~~v~~~~Ga~~~ 311 (456)
T PRK01766 233 PDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL-FMLPLSLAMALTIRVGFELGAGRT 311 (456)
T ss_pred CCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCH
Confidence 3456789999999999999999999999999999999999999999999996665 678899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 020086 142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (331)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 220 (331)
+++++..+.++.++..++++.+++ +.+.+++.++|+.|+++.+.+..|+++..++.++..++.+.++++||.||++.++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~ 391 (456)
T PRK01766 312 LDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIF 391 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHH
Confidence 999999999999999999887754 5689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhh
Q 020086 221 VIAAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (331)
Q Consensus 221 ~~~i~~~-~~~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~~~~~~~~ 269 (331)
+.++++. ++++++.+++.+..++|+.|+|+++.+++++..++..+++++
T Consensus 392 ~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
T PRK01766 392 FITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRK 441 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 889999999998888999999999999999999988777665
No 11
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.93 E-value=7e-24 Score=199.14 Aligned_cols=211 Identities=20% Similarity=0.226 Sum_probs=197.2
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCC
Q 020086 60 SREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAG 139 (331)
Q Consensus 60 ~~~~~~~~~~il~~~~P~~~~~~~~~l~~~i~~~~i~~lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~ 139 (331)
.+++++..|+++++++|.++++++......+.+.+++++|++.+|+++++.++.+.. +++..|++++++++++|++|+|
T Consensus 233 ~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvG~~~Ga~ 311 (455)
T COG0534 233 LKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFI-FMPPFGIAQAVTILVGQNLGAG 311 (455)
T ss_pred cCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCC
Confidence 356678899999999999999999999999999999999999999999999996655 7899999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhH
Q 020086 140 QLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMV 218 (331)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 218 (331)
|+|++++..+.+..++.++++..+++ +++++++..+|..|+|+.+.+..++++..+..++.+.+.+..+++||.||++.
T Consensus 312 ~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~ 391 (455)
T COG0534 312 NYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKI 391 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 99999999999999999999888854 66999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhhCCC
Q 020086 219 LAVIAAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGAC 272 (331)
Q Consensus 219 ~~~~~i~~~-~~~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~~~~~~~~~~~ 272 (331)
+++.++++. ++.+++.+++.+.+ +|..|+|++...++.+..++..++++++++
T Consensus 392 ~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~ 445 (455)
T COG0534 392 PFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRW 445 (455)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999998 77899999999877 999999999999999999999888877443
No 12
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.93 E-value=2.2e-23 Score=197.37 Aligned_cols=211 Identities=15% Similarity=0.136 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCc
Q 020086 62 EFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL 141 (331)
Q Consensus 62 ~~~~~~~~il~~~~P~~~~~~~~~l~~~i~~~~i~~lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~ 141 (331)
.+++.+|+++++|.|..++.....+...+.+.+++++|++++|+++++.++.+.. +.+..|++++.+++++|++|+||.
T Consensus 253 ~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~-~~~~~gi~~A~~~lvg~~~Ga~~~ 331 (478)
T PRK10189 253 LNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALI-NLPGNALGSASTIITGTRLGKGQI 331 (478)
T ss_pred CCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCH
Confidence 3567889999999999999999999999999999999999999999999996554 778999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 020086 142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (331)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 220 (331)
+++++..+.+..++.+.++.++++ +++++++..+|..|+|+.+.+..++++.++..++.+++.+..+.+||.||++.++
T Consensus 332 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~ 411 (478)
T PRK10189 332 AQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAM 411 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHH
Confidence 999999999999999998888765 5589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhhCCCC
Q 020086 221 VIAAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACG 273 (331)
Q Consensus 221 ~~~i~~~-~~~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~~~~~~~~~~~~ 273 (331)
++++++. ++.+++.+++...+++|+.|+|++..+++.+..++..+.+++++++
T Consensus 412 ~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~ 465 (478)
T PRK10189 412 WVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWL 465 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 9999998 8889999998888889999999999999999998877777664443
No 13
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.92 E-value=3.2e-23 Score=195.50 Aligned_cols=206 Identities=13% Similarity=0.167 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCC
Q 020086 61 REFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHIST-LALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAG 139 (331)
Q Consensus 61 ~~~~~~~~~il~~~~P~~~~~~~~~l~~~i~~~~i~~lg~-~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~ 139 (331)
+.+++..|++++++.|..+++....+...+.+.+++++|+ .++|+++++.++.... +.+..|++.+.++++||++|+|
T Consensus 227 ~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvg~~~Ga~ 305 (453)
T PRK09575 227 RFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLY-YLVAEGIAEGMQPPVSYYFGAR 305 (453)
T ss_pred CcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhcCC
Confidence 4456778999999999999999999999999999999885 5899999999996654 7789999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh
Q 020086 140 QLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQ-TQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIM 217 (331)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~-~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 217 (331)
|+|++++..+.++.+++..+++.+++ +.+.+++..+|+. |+|+.+.+.+|+++..++.++.+++.+..+++||.||++
T Consensus 306 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~ 385 (453)
T PRK09575 306 QYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGG 385 (453)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 99999999999999999999988865 5589999999985 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhh
Q 020086 218 VLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (331)
Q Consensus 218 ~~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~~~~~~~~ 269 (331)
.++..++...++++++.+++... +|+.|+|+++.+++++..++..+++++
T Consensus 386 ~~~~~~~~~~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 386 KALFISIGNMLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999998888899999988766 799999999999999988887776665
No 14
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.91 E-value=1.4e-21 Score=186.87 Aligned_cols=233 Identities=18% Similarity=0.149 Sum_probs=198.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcc
Q 020086 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (331)
Q Consensus 63 ~~~~~~~il~~~~P~~~~~~~~~l~~~i~~~~i~~lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~ 142 (331)
+++..|++++.+.|..++++...+...+|+.+.+.+|+.++++|+.+.++.+.....+..+++++..|.+++++|+||++
T Consensus 218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~ 297 (502)
T TIGR01695 218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWN 297 (502)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 34567999999999999999999999999998666999999999999999776534467899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh
Q 020086 143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQ----TQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIM 217 (331)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~----~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 217 (331)
+.++..+++..+...++++.+++ +.++++++.++.+ |+|..+.+..++++++++.++..++....+.+++.||++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~ 377 (502)
T TIGR01695 298 ELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTR 377 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCc
Confidence 99999999999999999988865 5589999988755 567788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHhHHHHHHHHHHHHHH
Q 020086 218 VLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLAS 297 (331)
Q Consensus 218 ~~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 297 (331)
.+++.++++.++|++++++++.. +|..|+|+|+.+++.+..++..++++|+..... ..+..+.+.|...++
T Consensus 378 ~~~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~as 448 (502)
T TIGR01695 378 TPFINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRRLKGIL-------PFGVLKVLAKLVIAS 448 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcCC-------chHHHHHHHHHHHHH
Confidence 99999999999999999999877 899999999999999999988777765322111 123445566655556
Q ss_pred HHHHHHH
Q 020086 298 AVMLCVE 304 (331)
Q Consensus 298 ~~~~~~~ 304 (331)
.+|....
T Consensus 449 ~~m~~~~ 455 (502)
T TIGR01695 449 AIIGGVL 455 (502)
T ss_pred HHHHHHH
Confidence 6655544
No 15
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.87 E-value=6.6e-20 Score=172.06 Aligned_cols=199 Identities=16% Similarity=0.141 Sum_probs=168.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcchH
Q 020086 65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMM 144 (331)
Q Consensus 65 ~~~~~il~~~~P~~~~~~~~~l~~~i~~~~i~~lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~ 144 (331)
+..|++++++.|..+++........+-+.+++++|++++|+++++.++... .+.+..|++++.+++++|++|+||.|++
T Consensus 229 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~-~~~~~~gl~~a~~~lvg~~~Ga~~~~~a 307 (441)
T PRK10367 229 GNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTF-TAYALDGFAYAVEAHSGQAYGARDGSQL 307 (441)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHcCCCHHHH
Confidence 468999999999999999999999999999999999999999999999555 4789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---chhHHH
Q 020086 145 GVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQS---KIMVLA 220 (331)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g---~~~~~~ 220 (331)
++..+.+..++.+++++.+++ +++++++..+|.+|+|+.+.+..++++.++..+.........+.++|.+ |++.++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~ 387 (441)
T PRK10367 308 LDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSM 387 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 999999999999999988865 5588999999999999999999999998876443334444444444444 599999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhhC
Q 020086 221 VIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSG 270 (331)
Q Consensus 221 ~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~~~~~~~~~ 270 (331)
+.++++..+ .++... ++|+.|+|++..+++.+..+++.+.++++
T Consensus 388 ~~~~~~~~~----~~~~~~--~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~ 431 (441)
T PRK10367 388 AVAAAGFAL----TLLTLP--WLGNHGLWLALTVFLALRGLSLAAIWRRH 431 (441)
T ss_pred HHHHHHHHH----HHHHHH--HcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988643 111222 38999999999999999999888776654
No 16
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.86 E-value=4.2e-19 Score=166.94 Aligned_cols=207 Identities=14% Similarity=0.101 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcc
Q 020086 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (331)
Q Consensus 63 ~~~~~~~il~~~~P~~~~~~~~~l~~~i~~~~i~~lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~ 142 (331)
..+..|++++...|.++.....++...+|+.+.+.+++.++++++.+.++.+.....+..+++++..|..++...+||.+
T Consensus 193 ~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~ 272 (451)
T PF03023_consen 193 RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWE 272 (451)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 34457899999999999999999999999999999999999999999999988766788899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcC----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh
Q 020086 143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIG----QTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIM 217 (331)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~----~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 217 (331)
+.++.+++++...+.+.+|.++. +.+++++++++. -+.|-.+.+..+++++++++|+..++..+...+.+.||+|
T Consensus 273 ~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~ 352 (451)
T PF03023_consen 273 EFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTK 352 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcH
Confidence 99999999999999999999865 559999998763 3566678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhhCC
Q 020086 218 VLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGA 271 (331)
Q Consensus 218 ~~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~~~~~~~~~~ 271 (331)
.+++.++++.++|++++.+++.. +|..|.++|+.++.++.++++...++|+.
T Consensus 353 ~~~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~~ 404 (451)
T PF03023_consen 353 TPVRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRRL 404 (451)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999988 99999999999999999999888887644
No 17
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.86 E-value=5.6e-19 Score=169.00 Aligned_cols=254 Identities=13% Similarity=0.060 Sum_probs=200.1
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHhc-CChhhH-HHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHhhhcCCCcchHHH
Q 020086 70 LWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLAL-AAVSVENSVIAGFSFGAM-LGMGSALETLCGQAYGAGQLDMMGV 146 (331)
Q Consensus 70 il~~~~P~~~~~~~~~l~~~i~~~~i~~-lg~~~~-aa~~~~~~i~~~~~~~~~-~gl~~a~~~~vs~~~g~~~~~~~~~ 146 (331)
++|.+.-..+.++...+++++|..++++ +|++++ ++++++.++.+.+..... .|++++..+...++.+++ |+.++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5677888899999999999999999999 999999 899999999766533333 467787777776654333 67777
Q ss_pred HHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH
Q 020086 147 YLQRSWIILITTAL-MLMF-MYIFAQQILSLI--GQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (331)
Q Consensus 147 ~~~~~~~~~~~~~~-~~~~-~~~~~~~i~~l~--~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 222 (331)
...++.......+. +..+ .+++++++..++ +.+++..+.+.+|++++.++.|+..+....++++|+.||.+.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 77776665554443 3344 456788888887 4577778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccchhH--HHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHhHHHHHHHHHHHHHHHHH
Q 020086 223 AAVALLLHTILSWLLILKLGLGLVGAA--VALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVM 300 (331)
Q Consensus 223 ~i~~~~~~i~l~~~li~~~~~G~~Gaa--~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~ 300 (331)
+++..+++++..+++. .++|..|++ +++.+++.+..++..+++++++.+ ++...+.+++..|++++.+.|..+.
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~~l~~~~p~~~~ 235 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFL--LKPRFNFRDPGLKRFLKLFLPTTLG 235 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc--ccCcCCCCChhHHHHHHHHHHHHHH
Confidence 9999888777544443 458999998 999999999988877766653322 1111122446789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchHhhhhhhc
Q 020086 301 LCVEIWYFMALILFAGYLKNAKLSVAGLS 329 (331)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~g~~~~aa~~i~ 329 (331)
.........+...+.+.+|+.++++.+.+
T Consensus 236 ~~~~~~~~~id~~~~~~~~~~~v~~~~~a 264 (502)
T TIGR01695 236 SSASQITLLINTALASFLEIGSVSALYYA 264 (502)
T ss_pred HHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 99999999999988888898888876653
No 18
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.86 E-value=3.1e-19 Score=170.11 Aligned_cols=243 Identities=13% Similarity=0.094 Sum_probs=199.8
Q ss_pred HHHHhHHHHHHHHHhHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcchHHHHHH
Q 020086 71 WYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQ 149 (331)
Q Consensus 71 l~~~~P~~~~~~~~~l~~~i~~~~i~~-lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~~ 149 (331)
+|.+.|.+++++...+.+++|+.+++| +|++++|+++.+.++...+......|++++....++|+.|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999999 8999999999999987765443446899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHH
Q 020086 150 RSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALL 228 (331)
Q Consensus 150 ~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~ 228 (331)
+++++..+.+++.+++ +.+.+++...++++++. ..+++++.+..++..+....++++|+.+|.+..+..++++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999998887755 45777777776666653 356788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-----cCCccchhHHHHHHHHHHHHHHHHHHHhhCCC---CCCCCCCCHHhHHHHHHHHHHHHHHHHH
Q 020086 229 LHTILSWLLILK-----LGLGLVGAAVALNASWWFIDITRLLYIFSGAC---GPTWSGFSWKAFHSLWSFVRLSLASAVM 300 (331)
Q Consensus 229 ~~i~l~~~li~~-----~~~G~~Gaa~a~~~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~p~~~~ 300 (331)
+|++++..++.. .++|+.|+++++.+++++..++..++++++++ +..+.++.+.+++.+|++++++.|..+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 998887666542 23678889999999999999887766554322 1112222234567899999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 020086 301 LCVEIWYFMALILFAGY 317 (331)
Q Consensus 301 ~~~~~~~~~~~~~~~~~ 317 (331)
+........+.+.++++
T Consensus 238 ~~~~~~~~~~d~~ii~~ 254 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQ 254 (488)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998888887776654
No 19
>PRK15099 O-antigen translocase; Provisional
Probab=99.85 E-value=7.2e-19 Score=164.34 Aligned_cols=251 Identities=10% Similarity=-0.011 Sum_probs=202.8
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcchHHHHH
Q 020086 70 LWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYL 148 (331)
Q Consensus 70 il~~~~P~~~~~~~~~l~~~i~~~~i~~-lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~ 148 (331)
++|.+......++...+.+++-..++.+ +|++++|.++....+...+......|++++.+..++|+ ++|+++.++..
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 5677777888888999899999999999 99999999999998877665555778888888889988 68888999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHH
Q 020086 149 QRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVAL 227 (331)
Q Consensus 149 ~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~ 227 (331)
+.++.+.++.+++.+++ +++.+++...++.+++. ..+..+..+..++..+....++.+|+.||++.++...+++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988887754 66889999887777652 34556666666677888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhhCCCC-CCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 020086 228 LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACG-PTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIW 306 (331)
Q Consensus 228 ~~~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~ 306 (331)
++|+.+ +++++.. .|+.|+++|+.+++.+..+...+++++++.. ..+.++ +.+++.+|+++++|.|...++.....
T Consensus 157 ~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKP-SWDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 4444432 4999999999999999888777666653321 111111 23567789999999999999999999
Q ss_pred HHHHHHHHHh-cCCchHhhhhhhc
Q 020086 307 YFMALILFAG-YLKNAKLSVAGLS 329 (331)
Q Consensus 307 ~~~~~~~~~~-~~g~~~~aa~~i~ 329 (331)
.......+++ .+|+.++++.+++
T Consensus 234 ~~~~~~~~l~~~~g~~~vg~y~~a 257 (416)
T PRK15099 234 AYVMMRNLLAAHYSWDEVGIWQGV 257 (416)
T ss_pred HHHHHHHHHHhcCCHHHhhHHHHH
Confidence 9999988885 9999999888754
No 20
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.84 E-value=8e-18 Score=156.87 Aligned_cols=234 Identities=17% Similarity=0.086 Sum_probs=201.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcc
Q 020086 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (331)
Q Consensus 63 ~~~~~~~il~~~~P~~~~~~~~~l~~~i~~~~i~~lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~ 142 (331)
+....|++++...|..+.....++...+|+.+.+.+.+.+++.+..+.++.+...-.+..++++...|..||+..++|.+
T Consensus 227 ~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~ 306 (518)
T COG0728 227 KDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWP 306 (518)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChH
Confidence 33678999999999999999999999999999999999999999999999988766789999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcC----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh
Q 020086 143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIG----QTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIM 217 (331)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~----~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 217 (331)
+.++..++++.++.++.+|..+. +.+++|+++.+. -+++-...+.+.+..+.++++++.+..++...+++.+|+|
T Consensus 307 ~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~k 386 (518)
T COG0728 307 EFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTK 386 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999975 559999998752 2455567789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHhHHHHHHHHHHHHHH
Q 020086 218 VLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLAS 297 (331)
Q Consensus 218 ~~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 297 (331)
.|+++++++.++|+.+++++... +|..|.++++.++.++.+.++++.++|+......+ .|.... ..|..+..
T Consensus 387 tP~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~~~-----~~~~~~-~~k~~l~~ 458 (518)
T COG0728 387 TPMKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKRLVYLPGR-----GWGLFL-ILKLLLAS 458 (518)
T ss_pred cChHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-----hhhHHH-HHHHHHHH
Confidence 99999999999999999888887 88899999999999999999888888755433332 233333 44555555
Q ss_pred HHHHHHH
Q 020086 298 AVMLCVE 304 (331)
Q Consensus 298 ~~~~~~~ 304 (331)
.++....
T Consensus 459 ~i~~~~~ 465 (518)
T COG0728 459 AIMAAAL 465 (518)
T ss_pred HHHHHHH
Confidence 5544443
No 21
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.83 E-value=2.5e-18 Score=163.86 Aligned_cols=204 Identities=14% Similarity=0.115 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhc-CCh------hhHHHH----HHHHHHHHHHHHHHHHHHhhhHH
Q 020086 61 REFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGH-IST------LALAAV----SVENSVIAGFSFGAMLGMGSALE 129 (331)
Q Consensus 61 ~~~~~~~~~il~~~~P~~~~~~~~~l~~~i~~~~i~~-lg~------~~~aa~----~~~~~i~~~~~~~~~~gl~~a~~ 129 (331)
+.+++.+|++++++.|.+++++...+.+.+|+.++++ +++ ++.+.+ +++.++.... ..+..+++++..
T Consensus 218 ~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~ 296 (488)
T TIGR02900 218 SEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALV 296 (488)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHH
Confidence 3456788999999999999999999999999999987 432 122222 3444554544 456789999999
Q ss_pred HHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020086 130 TLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVK 208 (331)
Q Consensus 130 ~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~ 208 (331)
|.+++++|+||+++.++..++...+...++++.+++ .+++++++.++..+++ +.+++++++++.++..+.....+
T Consensus 297 p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~ 372 (488)
T TIGR02900 297 PDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQS 372 (488)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988865 5588999988765443 67889999999999999999999
Q ss_pred HHhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhh
Q 020086 209 FLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (331)
Q Consensus 209 ~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~~~~~~~~ 269 (331)
.+++.||++.+++.++++.++|++++++++...++|+.|+|+|+.+++.+..++..+..+|
T Consensus 373 ~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 373 ILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999884444999999999999999999988877764
No 22
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.83 E-value=7.8e-21 Score=154.20 Aligned_cols=160 Identities=24% Similarity=0.402 Sum_probs=152.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcchHHHHHHHHHHHH
Q 020086 76 PAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIIL 155 (331)
Q Consensus 76 P~~~~~~~~~l~~~i~~~~i~~lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~ 155 (331)
|.+++++...+.+.+|+.+++++|++++++++++.++.+.. ..+..|++++..+.+||++|++|+|++++..++++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999997766 66999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHH-HHHHHH
Q 020086 156 ITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVAL-LLHTIL 233 (331)
Q Consensus 156 ~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~-~~~i~l 233 (331)
.+++++..++ +++.+++..+++.|+++.+.+..|+++..++.|+..+....++++||.||++.+++.++++. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999998866 66889999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHH
Q 020086 234 SWL 236 (331)
Q Consensus 234 ~~~ 236 (331)
+|+
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 885
No 23
>PRK15099 O-antigen translocase; Provisional
Probab=99.79 E-value=4.5e-17 Score=152.24 Aligned_cols=202 Identities=10% Similarity=-0.002 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHh-cCChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCC
Q 020086 61 REFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSG-HISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAG 139 (331)
Q Consensus 61 ~~~~~~~~~il~~~~P~~~~~~~~~l~~~i~~~~i~-~lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~ 139 (331)
+.+++..|+++++|.|..++++...+...+|+.+++ ++|++++|+|+.+.++.+.+...+..+++++..|.+++. +
T Consensus 208 ~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~ 284 (416)
T PRK15099 208 SWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---T 284 (416)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 345677899999999999999999999999999998 599999999999999977554568899999999999995 6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhH
Q 020086 140 QLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMV 218 (331)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 218 (331)
|+++.++..+........++++.+++ ++++++++.++.+++ .+.+.+++++++++.++...+......+...++++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~ 362 (416)
T PRK15099 285 EKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRF 362 (416)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999998888888877754 569999999987654 223678899999999988888877777778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhh
Q 020086 219 LAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (331)
Q Consensus 219 ~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~~~~~~~~ 269 (331)
.....+...++++++++++++. +|..|+++++.+++.+..++......+
T Consensus 363 ~~~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 363 YILAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998988889999999999988 899999999999999999877655543
No 24
>PRK10459 colanic acid exporter; Provisional
Probab=99.78 E-value=3.1e-16 Score=149.78 Aligned_cols=201 Identities=11% Similarity=0.043 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCc
Q 020086 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL 141 (331)
Q Consensus 63 ~~~~~~~il~~~~P~~~~~~~~~l~~~i~~~~i~~-lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~ 141 (331)
+++..|++++++.|...+++...+...+|+.++|+ +|++++|.|+.+.++.+.....+...+++...|..++. ++|+
T Consensus 202 ~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~ 279 (492)
T PRK10459 202 SLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDT 279 (492)
T ss_pred cHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCH
Confidence 35667999999999999999999999999999999 89999999999999977654445556778889999886 6788
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 020086 142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (331)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 220 (331)
++.++.+++...+...+++|+.++ ..++++++.++.+++ ...+...+++++++..+..+.......+++.||++..+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~ 357 (492)
T PRK10459 280 EKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSF 357 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhH
Confidence 899999999999998889988865 558899988775554 34578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhh
Q 020086 221 VIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (331)
Q Consensus 221 ~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~~~~~~~~ 269 (331)
..+++..+++++..+++... +|+.|+++|+.+++.+......++..|
T Consensus 358 ~~~~~~~~~~i~~~~~~~~~--~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 358 KWNVFKTFLFIPAIVIGGQL--AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888777766 899999999999999998888777754
No 25
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.71 E-value=5.6e-15 Score=140.68 Aligned_cols=187 Identities=21% Similarity=0.283 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCc
Q 020086 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL 141 (331)
Q Consensus 63 ~~~~~~~il~~~~P~~~~~~~~~l~~~i~~~~i~~-lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~ 141 (331)
.++..|++++.+.|..+..+...+.+.+|+.++++ +|++++|.|+.+.++.... ..+...++.+..|..++.+.++|+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence 46788999999999999999999999999999999 9999999999888885555 668889999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 020086 142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (331)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 220 (331)
++.++..+++..+...++++..++ .+++++++.++.+++.. .+...+++++++.++..+.......+++.|+++..+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999998875 55888998877665532 278889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHH
Q 020086 221 VIAAVALLLHTILSWLLILKLGLGLVGAAVALNAS 255 (331)
Q Consensus 221 ~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~~s 255 (331)
+.+.++.++|++++++++.. +|..|+++++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLIPR--FGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH
Confidence 99999999999999999988 8999999999 44
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.60 E-value=1.8e-12 Score=122.08 Aligned_cols=225 Identities=15% Similarity=0.122 Sum_probs=184.5
Q ss_pred CChh-hHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 020086 98 ISTL-ALAAVSVENSVIAGFSFGAM-LGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILS 174 (331)
Q Consensus 98 lg~~-~~aa~~~~~~i~~~~~~~~~-~gl~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 174 (331)
+|.. +..+|.++.++.+.+...+. .+++++..|...+.. ++++|+.++..+....+..+..+.++++ +++++++++
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5654 56789999999887744444 468999999999999 8899999999999888877777777654 668899998
Q ss_pred Hc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCc---cchhH
Q 020086 175 LI--GQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLG---LVGAA 249 (331)
Q Consensus 175 l~--~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~G---~~Gaa 249 (331)
++ +.|++..+.+.+++++..+..++.++..++.+++|+.+|...+....++.++..++...++... +| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~--~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNS--WGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHHH
Confidence 87 5578899999999999999999999999999999999999999998888887766655555544 67 88999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhhhhh
Q 020086 250 VALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAG 327 (331)
Q Consensus 250 ~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~aa~~ 327 (331)
+|+.++..+..++.+...++...+.+. .+ ....++.|++++...|..+..........+...+++.+++..+++..
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~ 237 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRP-KF-DWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALN 237 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccc-cC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 999999999999888887763332111 11 11234688999999999999999999999999999999999888754
No 27
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.49 E-value=1e-12 Score=119.49 Aligned_cols=132 Identities=23% Similarity=0.289 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCC
Q 020086 61 REFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQ 140 (331)
Q Consensus 61 ~~~~~~~~~il~~~~P~~~~~~~~~l~~~i~~~~i~~lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~ 140 (331)
+.+++..|++++++.|.+++++...+...+|+.+++++|++++++|+++.++.+.. ..+..+++++..|.+++++|+||
T Consensus 209 ~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~ 287 (342)
T TIGR00797 209 KPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLL-FMPAFGFGIAVSILVGQALGAGD 287 (342)
T ss_pred CCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCC
Confidence 34566789999999999999999999999999999999999999999999996655 66889999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 020086 141 LDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWM 193 (331)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~a~~~l~i~ 193 (331)
.++.++..+++.++...++++..++ +++++++.+++.+|+++.+.+..++++.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 288 PKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999988865 5588999999999999999999888764
No 28
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.43 E-value=4e-10 Score=98.69 Aligned_cols=243 Identities=18% Similarity=0.220 Sum_probs=170.6
Q ss_pred HHHHhHHHHHHHHHhHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcchHHHHHH
Q 020086 71 WYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQ 149 (331)
Q Consensus 71 l~~~~P~~~~~~~~~l~~~i~~~~i~~-lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~~ 149 (331)
+|.+.-....++...+.+++-..++.| +|+++.|.++....+.+.+......|++++....+++...+ +++.+....
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 466677788889999999999999999 99999999999999987765555788888887777776433 334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHH
Q 020086 150 RSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLL 229 (331)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~ 229 (331)
.......+.+++..+.... ...++.+ +.. ..+........+..........++++.++.+.....++...+.
T Consensus 80 ~~~~~~~~~~~i~~~~~~~----~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLI----ASFFGNP-SLS---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHcCCc-hHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433333333322222 1233333 321 2222222222357788888999999999999999999999988
Q ss_pred HHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020086 230 HTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFM 309 (331)
Q Consensus 230 ~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~ 309 (331)
..++..+++.. +.+..+..++..++..+..++..++.+++.+ . ++...+++..+++++.+.|..+..+.......
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR-P---RFSFFSKKFFKEILRFGLPLFLSSLLSWLYSQ 226 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c---cccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777666654 2448899999999999998888877775332 1 22223367899999999999999999999888
Q ss_pred HHHHHHhcC-CchHhhhhhh
Q 020086 310 ALILFAGYL-KNAKLSVAGL 328 (331)
Q Consensus 310 ~~~~~~~~~-g~~~~aa~~i 328 (331)
....+++.+ |+.+++..++
T Consensus 227 ~d~~ii~~~~g~~~vg~Y~~ 246 (273)
T PF01943_consen 227 IDRLIIGYFLGPEAVGIYSV 246 (273)
T ss_pred hHHHHHHHhCCHHHHHHHHH
Confidence 888776655 5666555444
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.42 E-value=9.6e-10 Score=103.18 Aligned_cols=257 Identities=14% Similarity=0.071 Sum_probs=199.7
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHhc-CCh-hhHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHhhhcCCCcchH
Q 020086 68 KKLWYLAGPAIFMTICQYPLGAITQVFSGH-IST-LALAAVSVENSVIAGFSFGAMLG-MGSALETLCGQAYGAGQLDMM 144 (331)
Q Consensus 68 ~~il~~~~P~~~~~~~~~l~~~i~~~~i~~-lg~-~~~aa~~~~~~i~~~~~~~~~~g-l~~a~~~~vs~~~g~~~~~~~ 144 (331)
.+++|.+.-.....+++.+.+++-..+++. +|. ....++.++.++.+.+--.+.-| ++++..|...++..++++|+.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 457777778888888888889987777777 898 46789999999998764444433 689999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHc-CC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 020086 145 GVYLQRSWIILITTALMLMFM-YIFAQQILSLI-GQ--TQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (331)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~-~~--~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 220 (331)
++..+....+...+.+.++++ .++.+.+++.. +. |++....+....+++.+..++..+.....+.++..++...+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 888777775555555555544 55677777444 33 234444688888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCCCHHhHHHHHHHHHHHHHHHH
Q 020086 221 VIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTW-SGFSWKAFHSLWSFVRLSLASAV 299 (331)
Q Consensus 221 ~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~p~~~ 299 (331)
+.-+.-++.-+...+.+....+.-..+.++++.++-++..++.+..++|.....++ ..++ -...|++.+...|..+
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~---~~~lk~~~~~~~p~~l 243 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFK---DPGLKRFLKLMLPALL 243 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCC---chhHHHHHHHHHHHHH
Confidence 98888887777566655554333467889999999999999999998873322111 1122 2478999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHhhhhh
Q 020086 300 MLCVEIWYFMALILFAGYLKNAKLSVAG 327 (331)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~g~~~~aa~~ 327 (331)
.....+....+.+.+++.+++...+..+
T Consensus 244 ~~sisQi~lli~~~iAS~l~~Gsis~l~ 271 (518)
T COG0728 244 GVSISQINLLIDTAIASFLAEGSVSWLY 271 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 9999999999999999999888776543
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.37 E-value=5.7e-10 Score=106.69 Aligned_cols=240 Identities=10% Similarity=0.055 Sum_probs=173.0
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcchHHH
Q 020086 68 KKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGV 146 (331)
Q Consensus 68 ~~il~~~~P~~~~~~~~~l~~~i~~~~i~~-lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~ 146 (331)
++..+-+....+.++...+.+++...+++| +|+++.|.++.+..+...+......|++++. .|. +|.+ ++
T Consensus 5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai----i~~---~~~~--~~ 75 (492)
T PRK10459 5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASI----IQR---QDIS--HL 75 (492)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHH----Hhc---ccCC--HH
Confidence 567788888899999999999999999999 9999999999999997776555556666654 222 1211 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHH
Q 020086 147 YLQRSWIILITTALMLMFMYI-FAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAV 225 (331)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~ 225 (331)
.....+++..+.++.+.++.+ +.+++..++ ++++. ...+++..+..++..+.....+.+|..++.+......++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~ 150 (492)
T PRK10459 76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFY-HNPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEIS 150 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHH
Confidence 344556666666666655434 555555555 44443 356777788888888888899999999999999988888
Q ss_pred HHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHH
Q 020086 226 ALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEI 305 (331)
Q Consensus 226 ~~~~~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~ 305 (331)
..++..++...+.+ .++|..+..++..+++.+..+...+..+ ++.++.+ +.+++..|++++.+.|.....+...
T Consensus 151 ~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~-~~~~~~~----~~~~~~~k~ll~~~~~~~~~~~~~~ 224 (492)
T PRK10459 151 AVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGR-KIYRPAL----HFSLASVKPNLSFGAWQTAERIINY 224 (492)
T ss_pred HHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhc-ccCCccc----eecHHHHHHHHhhhHHHHHHHHHHH
Confidence 88777766655544 4689999999999998887765433332 2222211 1234578999999999999999998
Q ss_pred HHHHHHHHHHhc-CCchHhhhhh
Q 020086 306 WYFMALILFAGY-LKNAKLSVAG 327 (331)
Q Consensus 306 ~~~~~~~~~~~~-~g~~~~aa~~ 327 (331)
....+...++++ +|+.+++..+
T Consensus 225 ~~~~~d~~~lg~~lg~~~vG~Y~ 247 (492)
T PRK10459 225 LNTNIDTILIGRILGAEVLGGYN 247 (492)
T ss_pred HHhcCchhhhhHhhchHhhhhHH
Confidence 888888887655 4666665544
No 31
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.35 E-value=4.5e-12 Score=119.04 Aligned_cols=204 Identities=14% Similarity=0.122 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhcCCh--hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCc
Q 020086 64 LKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHIST--LALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL 141 (331)
Q Consensus 64 ~~~~~~il~~~~P~~~~~~~~~l~~~i~~~~i~~lg~--~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~ 141 (331)
.+.+++++++++|..++...+.....+-....|.+++ .++++.++...+.. ..+++..+++.++++.+++.+|++|.
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~-~~~~~~~~~~~a~strv~neLGag~p 321 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGG-WHLMIPGAFSAAVSTRVSNELGAGKP 321 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHH-HHHHHhhhhhhhHHHHHHHHHcCCCh
Confidence 7888999999999999999999999999999999885 67899999888844 44778889999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 020086 142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (331)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 220 (331)
+.+|.....+...+..+++..+.. +.+.+.+..+|..|+|+.+...+..+++++.....+.+.+..+..+|.|..+...
T Consensus 322 ~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga 401 (473)
T KOG1347|consen 322 KRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGA 401 (473)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceE
Confidence 999999999999998888877754 5578888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHh
Q 020086 221 VIAAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIF 268 (331)
Q Consensus 221 ~~~i~~~-~~~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~~~~~~~ 268 (331)
++++... ++.+++..++-+..++|..|.|++...+..+....+.....
T Consensus 402 ~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~ 450 (473)
T KOG1347|consen 402 VINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTA 450 (473)
T ss_pred EEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHhee
Confidence 9999998 88899999998888999999999999996666665555544
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.24 E-value=2.7e-08 Score=86.12 Aligned_cols=221 Identities=18% Similarity=0.174 Sum_probs=149.2
Q ss_pred HHHHHHHHHhc-CChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 020086 87 LGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM 165 (331)
Q Consensus 87 ~~~i~~~~i~~-lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (331)
.+++-..+++| +|+++.|.++....+...+......|+.+... + ..++++++.++..+.......+.++...++
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLV----R-SAARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----H-hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888 99999999999999977664433455555433 3 234556666666666555444433333322
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 020086 166 YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGL 245 (331)
Q Consensus 166 ~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~G~ 245 (331)
...+..++ .+++ ...++.+..+..+...+....++.+++.+|.+......+...++...+..++... +.+.
T Consensus 78 ---~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 148 (251)
T PF13440_consen 78 ---AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLNL 148 (251)
T ss_pred ---HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-HhhH
Confidence 12222233 3332 3445667778888899999999999999999999999999998875444444433 3488
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchHhh
Q 020086 246 VGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGY-LKNAKLS 324 (331)
Q Consensus 246 ~Gaa~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~~~a 324 (331)
.+..++..++..+..+......++ +.+ ..+ ..+.. +.++.+.|........+........+++. +|+.+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g 220 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLRR-KLR--LSF----KFSWR-RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVG 220 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-ccC--CCc----hhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 889999889988877765553331 111 111 22222 47899999999999999999999888888 8888777
Q ss_pred hhhhc
Q 020086 325 VAGLS 329 (331)
Q Consensus 325 a~~i~ 329 (331)
..+++
T Consensus 221 ~y~~a 225 (251)
T PF13440_consen 221 IYSVA 225 (251)
T ss_pred HHHHH
Confidence 66553
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.12 E-value=3.3e-08 Score=94.27 Aligned_cols=244 Identities=15% Similarity=0.118 Sum_probs=168.0
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcchHH
Q 020086 67 GKKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMG 145 (331)
Q Consensus 67 ~~~il~~~~P~~~~~~~~~l~~~i~~~~i~~-lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~ 145 (331)
.+++.|.+.-....++...+..++-...++| +|+++.|.++.+..+...+......|+..+....++++..++++...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~~ 84 (480)
T COG2244 5 KKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLLI 84 (480)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHHH
Confidence 3678888899999999999999999999999 999999999999999887766666889999888888887666665555
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHH
Q 020086 146 VY-LQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAA 224 (331)
Q Consensus 146 ~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i 224 (331)
.. ....+....+.+++......+..+. ++ .....+++..++.+.........+.+|+.++.+......+
T Consensus 85 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (480)
T COG2244 85 LLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIV 154 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Confidence 55 4444444444433333332222222 22 2345567888999999999999999999999999998844
Q ss_pred HHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHH
Q 020086 225 VALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVE 304 (331)
Q Consensus 225 ~~~~~~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~ 304 (331)
.. .+-+.....+.. ....+..++...+..........+.++++....+..+ +..++.++++++.++|........
T Consensus 155 ~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~p~~~~~~~~ 229 (480)
T COG2244 155 SS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPIL-RFSLALLKELLRFGLPLLLSSLLN 229 (480)
T ss_pred HH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc-CchhHHHHHHHHHhhHHHHHHHHH
Confidence 44 222222222222 3455566666666666555555555421111111111 224678999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CchHhhh
Q 020086 305 IWYFMALILFAGYL-KNAKLSV 325 (331)
Q Consensus 305 ~~~~~~~~~~~~~~-g~~~~aa 325 (331)
.....+...+++++ |+.+++.
T Consensus 230 ~l~~~~D~~~i~~~l~~~~vG~ 251 (480)
T COG2244 230 FLFTNIDTLLLGLFLGPAQVGI 251 (480)
T ss_pred HHHHHHHHHHHHHHhhhhHhee
Confidence 99998888876654 4444433
No 34
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.91 E-value=6.1e-06 Score=71.77 Aligned_cols=251 Identities=12% Similarity=0.053 Sum_probs=156.0
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhcCC--h-hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcc
Q 020086 66 EGKKLWYLAGPAIFMTICQYPLGAITQVFSGHIS--T-LALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (331)
Q Consensus 66 ~~~~il~~~~P~~~~~~~~~l~~~i~~~~i~~lg--~-~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~ 142 (331)
..+.+.++-+|..++.+...+...+.+.-+++-. + +.+|+|+++..+.-.+ -.+...+-.. +-.++.++++
T Consensus 9 ~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~i-----gl~~V~s~rs 82 (345)
T PF07260_consen 9 SYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHI-----GLVFVNSKRS 82 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHH-----HHHHhcchhh
Confidence 4578999999999999999999777667676632 2 3489999999985444 3343333333 3344444433
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHH-HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHH
Q 020086 143 MMGVYLQRSWIILITTALMLMFM-YI-FAQQIL-SLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVL 219 (331)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~i~-~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 219 (331)
+.+.. ......+.+...+..++ +- +...++ .+++.++++.+.++..+.++.+..++.++....+|++-=.+++...
T Consensus 83 rr~~v-l~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV 161 (345)
T PF07260_consen 83 RRKAV-LCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIV 161 (345)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEe
Confidence 22222 22222222222222222 22 444444 5678999999999999999999999999999999999877888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccchhH---HHHHHHHHHHHHHHH-HHHhh-CCCCCCCCCCCHHhHHHHHHHHHHH
Q 020086 220 AVIAAVALLLHTILSWLLILKLGLGLVGAA---VALNASWWFIDITRL-LYIFS-GACGPTWSGFSWKAFHSLWSFVRLS 294 (331)
Q Consensus 220 ~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa---~a~~~s~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 294 (331)
...++...+..+++..+++...--....++ ++...+..+.+-+.. -|+.. ....+...+.........++++++.
T Consensus 162 ~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F~ 241 (345)
T PF07260_consen 162 GSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKFW 241 (345)
T ss_pred ehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHHH
Confidence 777777776666666555532101111111 222233322222221 12211 2222222222233445788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CCchHh
Q 020086 295 LASAVMLCVEIWYFMALILFAGY-LKNAKL 323 (331)
Q Consensus 295 ~p~~~~~~~~~~~~~~~~~~~~~-~g~~~~ 323 (331)
+|.+.........--+.+.+.+| +|..+-
T Consensus 242 ~PL~~~~~tq~~SrplVnl~vsR~l~gs~a 271 (345)
T PF07260_consen 242 WPLALVLATQRISRPLVNLFVSRDLSGSQA 271 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCccc
Confidence 99999999999999999999999 665433
No 35
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.89 E-value=1.1e-07 Score=75.41 Aligned_cols=79 Identities=25% Similarity=0.328 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhh
Q 020086 190 ATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (331)
Q Consensus 190 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~~~~~~~~ 269 (331)
+++++++.++..+....+..+++.||++..+..++++.++|+++++++++. +|..|+++|+.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999877 999999999999999999988888876
Q ss_pred C
Q 020086 270 G 270 (331)
Q Consensus 270 ~ 270 (331)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 3
No 36
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.73 E-value=3e-06 Score=81.24 Aligned_cols=201 Identities=14% Similarity=0.061 Sum_probs=161.7
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHhc---CChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCc---
Q 020086 68 KKLWYLAGPAIFMTICQYPLGAITQVFSGH---ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL--- 141 (331)
Q Consensus 68 ~~il~~~~P~~~~~~~~~l~~~i~~~~i~~---lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~--- 141 (331)
++.+++........+.-.+.+--|+.++.. ...++-|.|++++++-+++.-.+..++-...-...++...+++.
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~ 332 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKK 332 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhh
Confidence 678889999999999999999999999988 45678999999999988888888899999999999998765433
Q ss_pred ------chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 020086 142 ------DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQS 214 (331)
Q Consensus 142 ------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g 214 (331)
++..+.....+++...+++++.++ ...++.++.+++++......+...+++++..+|+.+++.+.-.++++..
T Consensus 333 ~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a 412 (549)
T PF04506_consen 333 QPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVA 412 (549)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhC
Confidence 335556666677777777655543 5577788888766655555578889999999999999999999999887
Q ss_pred chhHHHHH---HHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhh
Q 020086 215 KIMVLAVI---AAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (331)
Q Consensus 215 ~~~~~~~~---~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~~~~~~~~ 269 (331)
+.+-.... ..+..++-+..+++++.. ++|..|..+|..+.+.+..+....++++
T Consensus 413 ~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 413 SESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554443 344446667788888886 7999999999999999999998888876
No 37
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=0.00013 Score=66.59 Aligned_cols=198 Identities=15% Similarity=0.084 Sum_probs=142.7
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHhc---CChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcchHHH
Q 020086 70 LWYLAGPAIFMTICQYPLGAITQVFSGH---ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGV 146 (331)
Q Consensus 70 il~~~~P~~~~~~~~~l~~~i~~~~i~~---lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~ 146 (331)
.++...-..-..+.-.+.+-=|..++.. +.-.+-|.|.+.++.-.++.-.+..++-.......+|....++.|+.++
T Consensus 241 ~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~ 320 (530)
T KOG2864|consen 241 LLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVKK 320 (530)
T ss_pred HHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHHH
Confidence 3333334444555566666667777774 4445677888887776666677788888888889999888877777766
Q ss_pred HHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH--
Q 020086 147 YLQRS---WIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA-- 220 (331)
Q Consensus 147 ~~~~~---~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~-- 220 (331)
..... +.+...+++..+.. .-.++.++.++++++-....+...++++++.+|+.+++.+.-+++++.++.+-..
T Consensus 321 a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~ 400 (530)
T KOG2864|consen 321 AVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKH 400 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhc
Confidence 55544 44444444443332 3356777888877665555567889999999999999999999999987665543
Q ss_pred -HHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhh
Q 020086 221 -VIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (331)
Q Consensus 221 -~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~~~~~~~~ 269 (331)
+..++..++.++++|+++.. +|..|.-+|.++.+.+.-+....++++
T Consensus 401 n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 401 NKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred ccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455567788999999999 778999999999888888777777665
No 38
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.64 E-value=0.00033 Score=61.05 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhh
Q 020086 64 LKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAY 136 (331)
Q Consensus 64 ~~~~~~il~~~~P~~~~~~~~~l~~~i~~~~i~~-lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~ 136 (331)
++..|++++.+.|..++.+...+...+|+.++++ .|++++|.|+.+.++.... ..+...+.+...|.++|.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~-~~~~~~~~~~~~P~~s~l~ 273 (273)
T PF01943_consen 201 KKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAI-SFLLSSISTVLFPRLSRLW 273 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC
Confidence 6778999999999999999999999999999999 9999999999999997776 5688899999999998853
No 39
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=96.52 E-value=0.017 Score=49.55 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=60.4
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 020086 69 KLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQA 135 (331)
Q Consensus 69 ~il~~~~P~~~~~~~~~l~~~i~~~~i~~-lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~ 135 (331)
+.++.+.|..+..+...+.+.+|..+++. +|++++|.|+.+.++...+...+..++++...|.++|.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 37899999999999999999999999999 99999999999999977664368899999999988873
No 40
>COG4267 Predicted membrane protein [Function unknown]
Probab=92.84 E-value=7.5 Score=35.52 Aligned_cols=138 Identities=11% Similarity=0.127 Sum_probs=94.9
Q ss_pred HHHHHHHHhhhHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 020086 117 SFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQ 196 (331)
Q Consensus 117 ~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~ 196 (331)
+..+..|+....+..+|...=+++.+++.....-...+....+..+.. ++-...++.. ..|=...+..
T Consensus 73 S~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~-------~vf~~~~~~s-----i~yk~l~~~~ 140 (467)
T COG4267 73 SQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGL-------IVFFVNNQYS-----IVYKILACAL 140 (467)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH-------HhhhhcCchh-----HHHHHHHHHH
Confidence 344556777777777787777777777665554444433333222221 1112223322 2222344556
Q ss_pred HHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhh
Q 020086 197 LFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (331)
Q Consensus 197 ~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~~~~~~~~ 269 (331)
...++..+....++.+.+|.+...+...++.++.+.+..++-. .++.|.-++..++..+.......++.+
T Consensus 141 FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 141 FVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6777888889999999999999999999999999888877665 489999999999999988888777776
No 41
>COG4267 Predicted membrane protein [Function unknown]
Probab=84.23 E-value=34 Score=31.46 Aligned_cols=117 Identities=12% Similarity=0.097 Sum_probs=68.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhH
Q 020086 140 QLDMMGVYLQRSWIILITTALMLM-FMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMV 218 (331)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 218 (331)
+.+++....++.+.-.+-+-...+ .++++++.++.+++-++. -.+..++-.++.-+......+-.+.--..+-+.
T Consensus 318 ~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~----~l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i 393 (467)
T COG4267 318 NLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEY----YLDLFYVDVLGVSCQIVFMSLLNIFLYFDYRRI 393 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334445555555443333333334 345688888888876543 334455556666655555555555555666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-cCCccchhHHHHHHHHHHHH
Q 020086 219 LAVIAAVALLLHTILSWLLILK-LGLGLVGAAVALNASWWFID 260 (331)
Q Consensus 219 ~~~~~i~~~~~~i~l~~~li~~-~~~G~~Gaa~a~~~s~~~~~ 260 (331)
.+..+..-.+.|.++++++... .++--.|..+|..+.-.+..
T Consensus 394 ~l~~t~~fli~N~ilT~i~l~lgp~~~g~gff~a~fl~vlv~~ 436 (467)
T COG4267 394 ALELTALFLISNGILTFIFLELGPGYYGVGFFLASFLYVLVAF 436 (467)
T ss_pred hhhhhhHHHHHhHHHHHHHHHhCccceehHHHHHHHHHHHHHH
Confidence 7777777778888888887763 23444555555555544443
No 42
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=77.34 E-value=89 Score=31.88 Aligned_cols=20 Identities=10% Similarity=-0.027 Sum_probs=10.8
Q ss_pred HHHHHhhhHHHHHHhhhcCC
Q 020086 120 AMLGMGSALETLCGQAYGAG 139 (331)
Q Consensus 120 ~~~gl~~a~~~~vs~~~g~~ 139 (331)
+...++.-....++..+|.+
T Consensus 213 lG~iiG~li~G~LsDR~GRR 232 (742)
T TIGR01299 213 LGMMVGAFFWGGLADKLGRK 232 (742)
T ss_pred HHHHHHHHHHHHHHHHhCcH
Confidence 33445555555666666554
No 43
>PRK03612 spermidine synthase; Provisional
Probab=53.58 E-value=2.2e+02 Score=27.65 Aligned_cols=46 Identities=22% Similarity=0.195 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHH
Q 020086 220 AVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYI 267 (331)
Q Consensus 220 ~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~~~~~~ 267 (331)
...++.+.+-.+...++++.. +|..+..+....-+++..++..+..
T Consensus 152 ~~ntlGa~~G~l~~~~vLlp~--lG~~~t~~~~a~l~~~~a~~~~~~~ 197 (521)
T PRK03612 152 AADYLGALVGGLAFPFLLLPR--LGLIRTAALTGSLNLLAALVFLWLF 197 (521)
T ss_pred hHHhHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334446667777767 7887776666555555554443333
No 44
>PF14184 YrvL: Regulatory protein YrvL
Probab=52.84 E-value=1.1e+02 Score=23.71 Aligned_cols=107 Identities=14% Similarity=0.172 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 020086 152 WIILITTALMLMFMYIFAQQILSLIGQTQE-ISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLH 230 (331)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~ 230 (331)
........++.+..++...-+.+++|.+=+ .....--.+....++.|+..+..++...+.-.+-++.... .....+.
T Consensus 8 i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~~--~l~~~id 85 (132)
T PF14184_consen 8 IIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLFI--LLAFIID 85 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHH--HHHHHHH
Confidence 333444444444445566778888876432 3333333344456677877777777666665544443332 3444777
Q ss_pred HHHHHHHHHhcCCccchhHHHHHHHHHHHH
Q 020086 231 TILSWLLILKLGLGLVGAAVALNASWWFID 260 (331)
Q Consensus 231 i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~ 260 (331)
..+++..++..|.=+.++++.+..--.+..
T Consensus 86 ~~~t~~~i~~aD~~m~sI~is~~~e~i~al 115 (132)
T PF14184_consen 86 FLFTWITIYTADELMESISISTLSEIIFAL 115 (132)
T ss_pred HHHHHHHHHHHHHHhcceeeCcHHHHHHHH
Confidence 788888888766556676666544333333
No 45
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=48.86 E-value=67 Score=29.98 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=25.6
Q ss_pred chhhHHHHHHHHHHHHHHhHHHHHHHHHhHH
Q 020086 57 RDFSREFLKEGKKLWYLAGPAIFMTICQYPL 87 (331)
Q Consensus 57 ~~~~~~~~~~~~~il~~~~P~~~~~~~~~l~ 87 (331)
+..++.+.+..|.++.+.+|..+..+.+++.
T Consensus 232 ~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~I 262 (402)
T PF02487_consen 232 KLSFKEKLKRLKPLLWYMIPLFLVYFAEYFI 262 (402)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667778899999999999999999887
No 46
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=45.55 E-value=1e+02 Score=21.51 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=24.7
Q ss_pred HHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHH
Q 020086 128 LETLCGQAYGAGQLDMMGVYLQRSWIILITTAL 160 (331)
Q Consensus 128 ~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~ 160 (331)
.+..+-..+.+||++++++.-+++..++.+-.+
T Consensus 40 ~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~ 72 (82)
T PF04505_consen 40 YSSKVRSRYAAGDYEGARRASRKAKKWSIIAII 72 (82)
T ss_pred echhhHHHHHCCCHHHHHHHHHHhHHHHHHHHH
Confidence 335566678899999999999998877655333
No 47
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=42.38 E-value=1.2e+02 Score=25.74 Aligned_cols=38 Identities=5% Similarity=0.037 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHcCCChH---------HHHHHHHHHHHHHHHHHHHH
Q 020086 164 FMYIFAQQILSLIGQTQE---------ISNAAGTFATWMIPQLFAYA 201 (331)
Q Consensus 164 ~~~~~~~~i~~l~~~~~~---------~~~~a~~~l~i~~~~~~~~~ 201 (331)
+++.+..++..+++.|.- ..+-...|+++++.++|...
T Consensus 166 lvmt~g~d~m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~~ 212 (230)
T PF03904_consen 166 LVMTIGSDFMDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPYIF 212 (230)
T ss_pred HHHHhcccchhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHHHH
Confidence 344455566666653211 12234566666666666544
No 48
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=37.60 E-value=1.1e+02 Score=27.55 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=31.1
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhc-CCh
Q 020086 66 EGKKLWYLAGPAIFMTICQYPLGAITQVFSGH-IST 100 (331)
Q Consensus 66 ~~~~il~~~~P~~~~~~~~~l~~~i~~~~i~~-lg~ 100 (331)
..++++++.+|.+.....+....-+-+.+++| +|.
T Consensus 233 tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~g 268 (345)
T PF07260_consen 233 TLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSG 268 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 34789999999999999999999999999999 653
No 49
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=36.63 E-value=2.4e+02 Score=28.03 Aligned_cols=53 Identities=17% Similarity=0.046 Sum_probs=34.2
Q ss_pred HHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcC----CccchhHHHHHHHHHHH
Q 020086 207 VKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLG----LGLVGAAVALNASWWFI 259 (331)
Q Consensus 207 ~~~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~----~G~~Gaa~a~~~s~~~~ 259 (331)
..+++|..-+...-.-+++.-++..+....--...+ +=-.|+.+|..++|.-+
T Consensus 172 K~YLNGV~iP~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S 228 (762)
T KOG0474|consen 172 KCYLNGVKIPGIVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGS 228 (762)
T ss_pred hhhhcCccCcceeehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCc
Confidence 467788877777776666666666666554433221 44568888888887543
No 50
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=35.71 E-value=69 Score=33.33 Aligned_cols=39 Identities=8% Similarity=0.091 Sum_probs=17.3
Q ss_pred HHhhhHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHH
Q 020086 123 GMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALM 161 (331)
Q Consensus 123 gl~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 161 (331)
++...+...++-..|.+|.--...+-...+-+.+.++++
T Consensus 980 SIPDlisSvivArkG~gdMAVan~iGSNIFnIllgLGlP 1018 (1096)
T TIGR00927 980 SIPDLITSVIVARKGLGDMAVSSSVGSNIFDITVGLPVP 1018 (1096)
T ss_pred ccHHHHHHHHHHHccCCcceeeeccccchheeeeeccHH
Confidence 333333444444456555544444444444444444444
No 51
>PF02592 DUF165: Uncharacterized ACR, YhhQ family COG1738; InterPro: IPR003744 This is a family of uncharacterised proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins.
Probab=33.76 E-value=2.3e+02 Score=22.06 Aligned_cols=82 Identities=7% Similarity=0.157 Sum_probs=40.4
Q ss_pred HHhhhHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 020086 123 GMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYAL 202 (331)
Q Consensus 123 gl~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~ 202 (331)
++.--..-.+++.+|++ ++++.+..++...+++.+...+...++++- . .+++....-....++...+.....+
T Consensus 8 p~~fl~~Dii~E~yG~~---~a~~~i~~g~~~~~~~~~~~~~~~~lp~~~-~---~~~~~~~vf~~~~ri~~aS~~a~li 80 (145)
T PF02592_consen 8 PLTFLITDIISEVYGKK---AARKAIWIGFLANLLFSLLIWIVILLPPAP-F---WQEAFESVFGPTPRIALASLIAFLI 80 (145)
T ss_pred HHHHHHHHHHHHHhCHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-h---hHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33344446778888654 555556655555544433332222221110 0 1223333334556666667776766
Q ss_pred HHHHHHHHh
Q 020086 203 NFPMVKFLQ 211 (331)
Q Consensus 203 ~~~~~~~l~ 211 (331)
.+.......
T Consensus 81 sq~~d~~if 89 (145)
T PF02592_consen 81 SQLLDVYIF 89 (145)
T ss_pred HHHHHHHHH
Confidence 666654433
No 52
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=33.19 E-value=4.8e+02 Score=25.62 Aligned_cols=41 Identities=15% Similarity=0.047 Sum_probs=27.9
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHhc-CChhhHHHHHHHHHH
Q 020086 72 YLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSV 112 (331)
Q Consensus 72 ~~~~P~~~~~~~~~l~~~i~~~~i~~-lg~~~~aa~~~~~~i 112 (331)
+-+.-.++.|++..+.+++-+.++=| ++++.+|..++=..+
T Consensus 5 ~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeL 46 (549)
T PF04506_consen 5 KGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLEL 46 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHH
Confidence 44555677888888887765555555 999887776544444
No 53
>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT).
Probab=31.42 E-value=2.2e+02 Score=21.73 Aligned_cols=29 Identities=10% Similarity=-0.005 Sum_probs=20.6
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHHHhc
Q 020086 69 KLWYLAGPAIFMTICQYPLGAITQVFSGH 97 (331)
Q Consensus 69 ~il~~~~P~~~~~~~~~l~~~i~~~~i~~ 97 (331)
.+.+-++++.+..++..+...+|+++.-+
T Consensus 50 s~~ke~~~L~v~~vv~V~s~v~N~VL~K~ 78 (130)
T PF08627_consen 50 SYSKENFKLLVYVVVYVVSGVINRVLYKK 78 (130)
T ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777777777777777655
No 54
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=30.95 E-value=1.8e+02 Score=26.46 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=29.3
Q ss_pred CCCcchhhHHHHHHHHHHHHHHhHHHHHHHHHhHHHH
Q 020086 53 INGVRDFSREFLKEGKKLWYLAGPAIFMTICQYPLGA 89 (331)
Q Consensus 53 ~~~~~~~~~~~~~~~~~il~~~~P~~~~~~~~~l~~~ 89 (331)
..++....+...+.+|.++++-+|.....+.++..+.
T Consensus 232 v~s~~~~~~e~~~~i~pll~~MvPL~~VY~~EY~INQ 268 (409)
T KOG3880|consen 232 VPSRRLGLKETLKRIKPLLKYMVPLALVYFAEYFINQ 268 (409)
T ss_pred CchhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445556778888999999999999999988877643
No 55
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=30.03 E-value=4.5e+02 Score=24.31 Aligned_cols=41 Identities=15% Similarity=0.319 Sum_probs=30.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HcCCC
Q 020086 139 GQLDMMGVYLQRSWIILITTALMLMF-MYIFAQQILS-LIGQT 179 (331)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~-l~~~~ 179 (331)
.++++.+++.+.+...+.+......+ +....-|+.. ..+.+
T Consensus 88 p~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~~~~~ 130 (386)
T PF05975_consen 88 PKESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQVYGFS 130 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 36678999999999999888877664 4556777766 34433
No 56
>PTZ00370 STEVOR; Provisional
Probab=29.44 E-value=80 Score=27.78 Aligned_cols=29 Identities=10% Similarity=0.078 Sum_probs=19.3
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHhhCC
Q 020086 243 LGLVGAAVALNASWWFIDITRLLYIFSGA 271 (331)
Q Consensus 243 ~G~~Gaa~a~~~s~~~~~~~~~~~~~~~~ 271 (331)
++..|.+.-..+--.+.+++++++++|||
T Consensus 254 F~Pygiaalvllil~vvliilYiwlyrrR 282 (296)
T PTZ00370 254 FYPYGIAALVLLILAVVLIILYIWLYRRR 282 (296)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566666666777777777777777543
No 57
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=28.83 E-value=73 Score=27.96 Aligned_cols=33 Identities=12% Similarity=0.211 Sum_probs=21.2
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 020086 243 LGLVGAAVALNASWWFIDITRLLYIFSGACGPTW 276 (331)
Q Consensus 243 ~G~~Gaa~a~~~s~~~~~~~~~~~~~~~~~~~~~ 276 (331)
++..|.+.-..+--.+.+++++++++||| +..|
T Consensus 258 F~Pcgiaalvllil~vvliiLYiWlyrrR-K~sw 290 (295)
T TIGR01478 258 FLPYGIAALVLIILTVVLIILYIWLYRRR-KKSW 290 (295)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHhh-cccc
Confidence 34666666667777777777777777543 3444
No 58
>PRK10739 putative antibiotic transporter; Provisional
Probab=28.49 E-value=3.4e+02 Score=22.49 Aligned_cols=64 Identities=13% Similarity=0.189 Sum_probs=39.0
Q ss_pred HHHHHHhhhHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 020086 119 GAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAG 187 (331)
Q Consensus 119 ~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~a~ 187 (331)
.+...+++. |..-..-...++++.++..+++...+.+ .+.+..++.+.++++|+-+-+..+.+.
T Consensus 13 ~iinPig~i--piflslt~~~~~~~r~~ia~~a~~~a~~---ill~f~~~G~~iL~~fGIsl~afrIAG 76 (197)
T PRK10739 13 LIMDPLGNL--PIFMSVLKHLEPKRRRAIMIRELLIALL---VMLVFLFAGEKILAFLNLRTETVSISG 76 (197)
T ss_pred HHHhHhhHH--HHHHHHhCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 344555555 6665555556666666666665544433 222445578899999998866555444
No 59
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=28.33 E-value=71 Score=24.27 Aligned_cols=6 Identities=17% Similarity=-0.108 Sum_probs=2.4
Q ss_pred HHHHhh
Q 020086 264 LLYIFS 269 (331)
Q Consensus 264 ~~~~~~ 269 (331)
.|+++|
T Consensus 85 ~y~irR 90 (122)
T PF01102_consen 85 SYCIRR 90 (122)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334444
No 60
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=27.88 E-value=3.3e+02 Score=25.21 Aligned_cols=96 Identities=10% Similarity=0.054 Sum_probs=55.9
Q ss_pred HHhHHHHHHHHHhHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcchHHHHHHHH
Q 020086 73 LAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRS 151 (331)
Q Consensus 73 ~~~P~~~~~~~~~l~~~i~~~~i~~-lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~~~~ 151 (331)
+|.-.+.+++.+.+...+-+.+.-+ +|+.+++.-+.+..+.-++ +. -..-+.+++-..|++....+..
T Consensus 59 ig~iLIGNNLvNilasalaT~~~irl~Gd~GvaIAt~~mT~vilv---Fa--------EVlPKt~Aa~~perva~~~s~~ 127 (423)
T COG4536 59 IGTILIGNNLVNILASALATILGIRLYGDAGVAIATGVLTFVILV---FA--------EVLPKTIAALYPERVALPSSFI 127 (423)
T ss_pred eeeeeecccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH---HH--------HhcchHHhhhChhhhhhhhhHH
Confidence 3555666777777776665555545 8877765544444432211 11 3344555666777776666555
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHcCCC
Q 020086 152 WIILITTALMLM-FMYIFAQQILSLIGQT 179 (331)
Q Consensus 152 ~~~~~~~~~~~~-~~~~~~~~i~~l~~~~ 179 (331)
+.....+.-|+. ++-++.+.++++|+-+
T Consensus 128 l~~l~~l~~Plv~lln~it~~llrl~gi~ 156 (423)
T COG4536 128 LAILVRLFGPLVWLLNAITRRLLRLLGIN 156 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 555544444544 4455778888888643
No 61
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=27.86 E-value=3.6e+02 Score=22.45 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=37.3
Q ss_pred HHHHHhhhHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 020086 120 AMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAG 187 (331)
Q Consensus 120 ~~~gl~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~a~ 187 (331)
+...+++. |..-..-...+.++.++..+++...+.+ .+.+..++.+.++++|+-+-+..+.+.
T Consensus 17 iinPig~i--pvfl~lt~~~~~~~r~~ia~~~~l~a~~---ill~f~~~G~~iL~~fgIsl~afrIaG 79 (201)
T TIGR00427 17 IINPIGNI--PIFISLTEYYTAAERNKIAKKANISSFI---ILLIFLVFGDTILKLFGISIDAFRIAG 79 (201)
T ss_pred HhCcchHH--HHHHHHhCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 44555555 6666665555666666666655444333 223445577889999988766554444
No 62
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=25.70 E-value=4.5e+02 Score=23.46 Aligned_cols=21 Identities=10% Similarity=-0.159 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020086 290 FVRLSLASAVMLCVEIWYFMA 310 (331)
Q Consensus 290 ~l~~~~p~~~~~~~~~~~~~~ 310 (331)
+-+.|-|.....+....+|..
T Consensus 244 ~~~~g~~i~~s~ltt~~gf~~ 264 (333)
T PF03176_consen 244 VRSTGRAILLSALTTAIGFGS 264 (333)
T ss_pred HhccCchhHHHHHHHHHHHHH
Confidence 333444555544444444443
No 63
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=23.53 E-value=4.6e+02 Score=25.49 Aligned_cols=54 Identities=11% Similarity=0.039 Sum_probs=33.3
Q ss_pred hcCchhHHHHHHHHHH-HHHHHHHHHHHHhcC-----------CccchhHHHHHHHHHHHHHHHHH
Q 020086 212 AQSKIMVLAVIAAVAL-LLHTILSWLLILKLG-----------LGLVGAAVALNASWWFIDITRLL 265 (331)
Q Consensus 212 ~~g~~~~~~~~~i~~~-~~~i~l~~~li~~~~-----------~G~~Gaa~a~~~s~~~~~~~~~~ 265 (331)
..++.....+..++.. ++.++..++..+.+. ++..-.+.++.++-.+..++..+
T Consensus 288 ~~~~i~~al~~gl~~t~~Lsvv~~~~~t~~l~g~~~~~v~g~~~~~~~lf~~~~~Glv~~~lIv~i 353 (703)
T COG3808 288 KSGSIMGALYKGLIATGILSVVALAFVTSFLLGGTIGTVAGMSIGAINLFFCGVIGLVVTALIVVI 353 (703)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHheee
Confidence 4455555666666666 777777776666432 44444677777777777665443
No 64
>KOG3249 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.71 E-value=4.1e+02 Score=21.33 Aligned_cols=10 Identities=40% Similarity=0.365 Sum_probs=4.9
Q ss_pred hHHHHHHHHH
Q 020086 102 ALAAVSVENS 111 (331)
Q Consensus 102 ~~aa~~~~~~ 111 (331)
+++||++.+.
T Consensus 149 EmSAYSVFN~ 158 (181)
T KOG3249|consen 149 EMSAYSVFNE 158 (181)
T ss_pred ccchhhhhcc
Confidence 4555554443
No 65
>PRK11111 hypothetical protein; Provisional
Probab=22.22 E-value=4.8e+02 Score=21.97 Aligned_cols=63 Identities=13% Similarity=0.100 Sum_probs=34.6
Q ss_pred HHHHHhhhHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 020086 120 AMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAG 187 (331)
Q Consensus 120 ~~~gl~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~a~ 187 (331)
+...++.. |..-..-...+.++.++..+++...+. +.+.+..++.+.++++|+-+-+..+.+.
T Consensus 20 iinPig~i--piflslt~~~s~~~r~~ia~~a~l~a~---~ill~f~~~G~~iL~~fGIsl~afrIaG 82 (214)
T PRK11111 20 LVNPVGIL--PVFISMTSHQTAAERNKTNLTANLSVA---IILLISLFLGDFILNLFGISIDSFRIAG 82 (214)
T ss_pred HhCcchhH--HHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 33444444 444444444455555555555443322 2233445678899999998766555444
No 66
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=21.82 E-value=4.5e+02 Score=21.50 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=20.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhh
Q 020086 244 GLVGAAVALNASWWFIDITRLLYIFS 269 (331)
Q Consensus 244 G~~Gaa~a~~~s~~~~~~~~~~~~~~ 269 (331)
+..|...++.+++.+..++...|.++
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~n 160 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFN 160 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheee
Confidence 45577788889999888888877776
No 67
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=21.02 E-value=63 Score=30.36 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=27.8
Q ss_pred HHHHHHHhhhHHHHHHhhhcCCCcchHHHHHHHH
Q 020086 118 FGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRS 151 (331)
Q Consensus 118 ~~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~~~~ 151 (331)
-.+..|+|.++..++++.+|+.+..+.++.+--.
T Consensus 415 GiLalGiGDTmASiiG~r~G~~RW~~TkKTlEGT 448 (510)
T KOG2468|consen 415 GILALGIGDTMASIIGKRYGRIRWSGTKKTLEGT 448 (510)
T ss_pred hheeeccchHHHHHHhhhhcceecCCCcceeehh
Confidence 3466899999999999999999998887766543
No 68
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=20.86 E-value=2.2e+02 Score=17.57 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=6.8
Q ss_pred HHHHHHHHHHcCC
Q 020086 166 YIFAQQILSLIGQ 178 (331)
Q Consensus 166 ~~~~~~i~~l~~~ 178 (331)
+-|.-++..++.+
T Consensus 32 YGF~vWm~Q~~~G 44 (47)
T TIGR02972 32 YGFIIWMIQAFGG 44 (47)
T ss_pred HHHHHHHHHHHcC
Confidence 3355566655543
No 69
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=20.85 E-value=4.6e+02 Score=21.25 Aligned_cols=116 Identities=13% Similarity=0.114 Sum_probs=52.6
Q ss_pred HHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020086 130 TLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQ-EISNAAGTFATWMIPQLFAYALNFPMVK 208 (331)
Q Consensus 130 ~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~~~a~~~l~i~~~~~~~~~~~~~~~~ 208 (331)
|.+-+...++=+++.++.++.....-...++.+. +-+..-+..+...++ ...-.+. ..+.++.|...... ...
T Consensus 16 P~~y~di~~eIP~~~q~~v~~~y~~w~~~~~~l~--~N~i~~~~~~~~~~~~~~~~lai---~y~~~~~P~sf~~w-yrp 89 (177)
T PF04144_consen 16 PCFYHDISEEIPEEFQRLVKRAYYLWLFLAITLF--WNFIACLALLIAGGSGSDFGLAI---LYLLLGTPASFFCW-YRP 89 (177)
T ss_pred CeEEeCHhHhCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCCcceehHHH---HHHHHHhHHHHHHH-HHH
Confidence 3444445555566777777777655444322211 112222333332222 1111222 22234444443322 344
Q ss_pred HHhhc-CchhHHHHHHHHHHHHHHHHHHHHHHh-cCCccchhHHH
Q 020086 209 FLQAQ-SKIMVLAVIAAVALLLHTILSWLLILK-LGLGLVGAAVA 251 (331)
Q Consensus 209 ~l~~~-g~~~~~~~~~i~~~~~~i~l~~~li~~-~~~G~~Gaa~a 251 (331)
..++. .|.............+.++.+.+.... .++|..|...+
T Consensus 90 lY~A~r~dss~~f~~ff~~~~~~i~f~i~~aIG~p~~G~~G~i~a 134 (177)
T PF04144_consen 90 LYKAFRTDSSFRFMWFFFFFFVHIIFCIIMAIGIPGWGSCGWITA 134 (177)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 44444 444455555555667777776665543 34565555444
Done!