Query 020086
Match_columns 331
No_of_seqs 242 out of 2071
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 11:34:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020086.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020086hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 2.9E-30 9.9E-35 242.4 21.6 268 61-329 5-279 (460)
2 3mkt_A Multi antimicrobial ext 99.9 3.7E-24 1.3E-28 200.8 19.6 205 64-269 234-445 (460)
3 1pw4_A Glycerol-3-phosphate tr 48.7 1.4E+02 0.0047 26.1 19.6 30 68-97 28-57 (451)
4 2ks1_B Epidermal growth factor 27.8 94 0.0032 18.0 4.6 10 261-270 29-38 (44)
5 2k1k_A Ephrin type-A receptor 27.4 66 0.0023 18.0 3.0 11 247-257 15-25 (38)
6 2jwa_A Receptor tyrosine-prote 25.9 86 0.0029 18.2 3.3 9 263-271 31-39 (44)
7 1pw4_A Glycerol-3-phosphate tr 10.2 7.8E+02 0.027 20.9 19.9 22 243-264 410-431 (451)
8 4ev6_A Magnesium transport pro 10.0 5.1E+02 0.018 22.0 6.0 14 256-269 322-335 (339)
9 2jek_A RV1873; structural geno 9.0 4.7E+02 0.016 19.4 4.5 90 131-222 52-142 (145)
10 3zux_A Transporter, ASBTNM; tr 8.2 9.3E+02 0.032 20.4 11.4 117 140-267 61-177 (332)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.97 E-value=2.9e-30 Score=242.39 Aligned_cols=268 Identities=22% Similarity=0.333 Sum_probs=241.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCC
Q 020086 61 REFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQ 140 (331)
Q Consensus 61 ~~~~~~~~~il~~~~P~~~~~~~~~l~~~i~~~~i~~lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~ 140 (331)
...++..|++++.++|.+++++...+.+.+|+.+++++|++++|+++++.++.... ..+..|++.+..+.++|++|++|
T Consensus 5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~ 83 (460)
T 3mkt_A 5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGR 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 45667889999999999999999999999999999999999999999999995554 56789999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 020086 141 LDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (331)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 220 (331)
+++.++.+++++.+..+++++..+++++.++++.+++.+++..+.+..|+++++++.++..+....++++|+.||++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (460)
T 3mkt_A 84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM 163 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999998877777788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh-c---CCccchhHHHHHHHHHHHHHHHHHHHhhCCCCCC---CCCCCHHhHHHHHHHHHH
Q 020086 221 VIAAVALLLHTILSWLLILK-L---GLGLVGAAVALNASWWFIDITRLLYIFSGACGPT---WSGFSWKAFHSLWSFVRL 293 (331)
Q Consensus 221 ~~~i~~~~~~i~l~~~li~~-~---~~G~~Gaa~a~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~ 293 (331)
+.++++.++|+++++++++. + ++|+.|+++|+.+++++..++..+++++++.... ++++.+.+++.+|++++.
T Consensus 164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (460)
T 3mkt_A 164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL 243 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence 99999999999999999985 4 6999999999999999999988888776433221 233334456688999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHhhhhhhc
Q 020086 294 SLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLS 329 (331)
Q Consensus 294 ~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~aa~~i~ 329 (331)
+.|..++.+.+...+.+.+.+++++|+.++++++++
T Consensus 244 ~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~ 279 (460)
T 3mkt_A 244 GFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVA 279 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 999999999999999999999999999999998875
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.92 E-value=3.7e-24 Score=200.75 Aligned_cols=205 Identities=15% Similarity=0.114 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcch
Q 020086 64 LKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDM 143 (331)
Q Consensus 64 ~~~~~~il~~~~P~~~~~~~~~l~~~i~~~~i~~lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~ 143 (331)
++..|++++++.|.+++++...+...+|+.+++++|++++|+|+++.++.+.. ..+..+++++..|.+++++|++|+++
T Consensus 234 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~~~~ 312 (460)
T 3mkt_A 234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQDTKG 312 (460)
T ss_dssp TSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 34558899999999999999999999999999999999999999999997766 57889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH
Q 020086 144 MGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (331)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 222 (331)
.++..+.+..+...++++.+++ +++++++..++..|+++.+.+..++++++++.++.+++.+..+++++.||++.+++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 392 (460)
T 3mkt_A 313 AAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHR 392 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 9999999999999999988865 568999999998888988999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHh----cC-CccchhHHHHHHHHHHHHHHHHHHHhh
Q 020086 223 AAVAL-LLHTILSWLLILK----LG-LGLVGAAVALNASWWFIDITRLLYIFS 269 (331)
Q Consensus 223 ~i~~~-~~~i~l~~~li~~----~~-~G~~Gaa~a~~~s~~~~~~~~~~~~~~ 269 (331)
++++. ++++++++++++. ++ +|+.|+|+|+.+++.+..++..+.++|
T Consensus 393 ~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~ 445 (460)
T 3mkt_A 393 TFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYW 445 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999987 77 999999999999999998877665554
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=48.75 E-value=1.4e+02 Score=26.11 Aligned_cols=30 Identities=0% Similarity=-0.171 Sum_probs=12.9
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHhc
Q 020086 68 KKLWYLAGPAIFMTICQYPLGAITQVFSGH 97 (331)
Q Consensus 68 ~~il~~~~P~~~~~~~~~l~~~i~~~~i~~ 97 (331)
+.++....-.++..............+..+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ 57 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=27.79 E-value=94 Score=18.03 Aligned_cols=10 Identities=10% Similarity=0.072 Sum_probs=4.0
Q ss_pred HHHHHHHhhC
Q 020086 261 ITRLLYIFSG 270 (331)
Q Consensus 261 ~~~~~~~~~~ 270 (331)
+..+++++++
T Consensus 29 ~~~~~~~RRr 38 (44)
T 2ks1_B 29 LGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHhhhh
Confidence 3333444443
No 5
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=27.43 E-value=66 Score=17.98 Aligned_cols=11 Identities=9% Similarity=-0.197 Sum_probs=4.5
Q ss_pred hhHHHHHHHHH
Q 020086 247 GAAVALNASWW 257 (331)
Q Consensus 247 Gaa~a~~~s~~ 257 (331)
|+.++.+.+-.
T Consensus 15 GiVvG~v~gv~ 25 (38)
T 2k1k_A 15 AVIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred eeehHHHHHHH
Confidence 44444444333
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=25.87 E-value=86 Score=18.21 Aligned_cols=9 Identities=11% Similarity=-0.201 Sum_probs=4.0
Q ss_pred HHHHHhhCC
Q 020086 263 RLLYIFSGA 271 (331)
Q Consensus 263 ~~~~~~~~~ 271 (331)
...+++|++
T Consensus 31 ~~~~~RRR~ 39 (44)
T 2jwa_A 31 FGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHC
T ss_pred HHhheehhh
Confidence 344555533
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=10.17 E-value=7.8e+02 Score=20.94 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=10.7
Q ss_pred CccchhHHHHHHHHHHHHHHHH
Q 020086 243 LGLVGAAVALNASWWFIDITRL 264 (331)
Q Consensus 243 ~G~~Gaa~a~~~s~~~~~~~~~ 264 (331)
.|.....+...+...+..++..
T Consensus 410 ~g~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 410 FGWDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHH
Confidence 4655555554444444444433
No 8
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=9.95 E-value=5.1e+02 Score=22.01 Aligned_cols=14 Identities=7% Similarity=-0.138 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHhh
Q 020086 256 WWFIDITRLLYIFS 269 (331)
Q Consensus 256 ~~~~~~~~~~~~~~ 269 (331)
.++.+++.+++++|
T Consensus 322 m~~~~~~~~~~fkr 335 (339)
T 4ev6_A 322 MVVIIMIFVYIFRR 335 (339)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 34444445555554
No 9
>2jek_A RV1873; structural genomics, unknown function, hypothetical protein, right-handed superhelix, TB structural genomics consortium; 1.38A {Mycobacterium tuberculosis} SCOP: a.255.1.1
Probab=8.99 E-value=4.7e+02 Score=19.43 Aligned_cols=90 Identities=12% Similarity=0.118 Sum_probs=52.1
Q ss_pred HHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 020086 131 LCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLF-AYALNFPMVKF 209 (331)
Q Consensus 131 ~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~-~~~~~~~~~~~ 209 (331)
-.+++||-.+.++++.+...-+.-.=..-+.-.+.-.-....-.+||...+. .. ..-+..+....+ -..+..++..+
T Consensus 52 ~~A~~YgI~sl~EA~AYL~hpvLg~RL~e~~~~ll~~~~~sa~~IfG~~D~~-Kl-rSsMTLFa~a~~~~~~F~~vL~~~ 129 (145)
T 2jek_A 52 PLAVRYGISSLEEAQAYLQHDLLGPRLHECTGLVNQVQGRSIEEIFGPPDDL-KL-CSSMTLFARATDANQDFVALLAKY 129 (145)
T ss_dssp HHHHHTSBCSHHHHHHHHHSTTHHHHHHHHHHHHHHCCSCCHHHHSCTTHHH-HH-HHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred hhhhHhccCCHHHHHHHHcChHHHHHHHHHHHHHHhccCCCHHHHcCChhHH-HH-HhHHHHHHHcCCCchHHHHHHHHH
Confidence 4589999999999999987765432221111111112334666777764443 21 112222222222 24678888999
Q ss_pred HhhcCchhHHHHH
Q 020086 210 LQAQSKIMVLAVI 222 (331)
Q Consensus 210 l~~~g~~~~~~~~ 222 (331)
+.|..|.+..-..
T Consensus 130 f~G~~D~~Tl~~L 142 (145)
T 2jek_A 130 YGGGEDRRTVALL 142 (145)
T ss_dssp STTCCCHHHHHHH
T ss_pred cCCCCCHHHHHHh
Confidence 9999998876543
No 10
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=8.22 E-value=9.3e+02 Score=20.38 Aligned_cols=117 Identities=13% Similarity=0.199 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHH
Q 020086 140 QLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVL 219 (331)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 219 (331)
+.++.++..++--........=..+.=+..--+..+++.+++...- .++..+.|......+.+...+ ||....
T Consensus 61 ~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~~~~~~G-----lil~~~~P~~~~s~v~t~~a~--Gd~~la 133 (332)
T 3zux_A 61 KPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVG-----VILVGCCPGGTASNVMTYLAR--GNVALS 133 (332)
T ss_dssp CGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH-----HHHHHHSCCCTHHHHHHHHTT--CCHHHH
T ss_pred CHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHH-----HHHHhcCCchhHHHHHHHHhC--CCHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHH
Q 020086 220 AVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYI 267 (331)
Q Consensus 220 ~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~~~~~~ 267 (331)
.....+++++.++..+++... ..|..........+..+.....+
T Consensus 134 ~~~~~~stll~~~~~Pl~~~l----~~g~~~~v~~~~~~~~l~~~vll 177 (332)
T 3zux_A 134 VAVTSVSTLTSPLLTPAIFLM----LAGEMLEIQAAGMLMSIVKMVLL 177 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHCGGGHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HcCCccCCCHHHHHHHHHHHHHH
Done!