Query 020086
Match_columns 331
No_of_seqs 242 out of 2071
Neff 9.7
Searched_HMMs 13730
Date Mon Mar 25 11:34:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020086.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020086hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 67.2 30 0.0022 28.1 19.4 26 243-268 407-432 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 22.1 1.6E+02 0.012 22.5 17.6 20 243-262 376-395 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 8.7 4.1E+02 0.03 20.4 17.6 13 125-137 75-87 (447)
4 d1q90b_ f.21.1.2 (B:) Cytochro 6.5 4.5E+02 0.033 19.0 6.9 62 201-262 94-156 (212)
5 d2jeka1 a.255.1.1 (A:6-145) Hy 6.4 2.7E+02 0.02 18.9 3.9 95 123-222 42-137 (140)
6 d1ppjc2 f.21.1.2 (C:15-260) Mi 5.6 5.4E+02 0.039 19.0 6.8 14 203-216 111-124 (246)
7 d1xmeb2 f.17.2.1 (B:3-36) Bact 5.4 2E+02 0.014 13.6 3.1 15 249-263 16-30 (34)
8 d2nwwa1 f.49.1.1 (A:12-416) Pr 4.6 7.4E+02 0.054 19.4 9.6 29 59-87 31-60 (405)
9 d2csba3 a.60.2.4 (A:410-464) T 3.1 2.5E+02 0.018 14.7 1.3 18 170-187 16-33 (55)
10 d1fftc_ f.25.1.1 (C:) Cytochro 2.9 3.8E+02 0.027 18.6 2.6 90 72-161 8-97 (185)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=67.24 E-value=30 Score=28.14 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=14.0
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHh
Q 020086 243 LGLVGAAVALNASWWFIDITRLLYIF 268 (331)
Q Consensus 243 ~G~~Gaa~a~~~s~~~~~~~~~~~~~ 268 (331)
+|..+..+.......+..++......
T Consensus 407 ~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 407 FGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666665555555555554444433
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=22.13 E-value=1.6e+02 Score=22.52 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=8.3
Q ss_pred CccchhHHHHHHHHHHHHHH
Q 020086 243 LGLVGAAVALNASWWFIDIT 262 (331)
Q Consensus 243 ~G~~Gaa~a~~~s~~~~~~~ 262 (331)
+|...+.+...+...+..++
T Consensus 376 ~g~~~~~~~~~~~~~~~~~~ 395 (417)
T d1pv7a_ 376 IGFQGAYLVLGLVALGFTLI 395 (417)
T ss_dssp HCHHHHHHHHHHHHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHHH
Confidence 45544444333333333333
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=8.74 E-value=4.1e+02 Score=20.44 Aligned_cols=13 Identities=0% Similarity=-0.125 Sum_probs=5.6
Q ss_pred hhhHHHHHHhhhc
Q 020086 125 GSALETLCGQAYG 137 (331)
Q Consensus 125 ~~a~~~~vs~~~g 137 (331)
+.-.....+..+|
T Consensus 75 ~~~~~G~l~Dr~g 87 (447)
T d1pw4a_ 75 SKFIMGSVSDRSN 87 (447)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcC
Confidence 3333344455544
No 4
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.50 E-value=4.5e+02 Score=19.00 Aligned_cols=62 Identities=13% Similarity=-0.039 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhh-cCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHH
Q 020086 201 ALNFPMVKFLQA-QSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDIT 262 (331)
Q Consensus 201 ~~~~~~~~~l~~-~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~~s~~~~~~~ 262 (331)
..-...+.++.| .++++...+..-+...+......+.-+.+.||-.+-|-+++..+....+-
T Consensus 94 ~~lHm~r~~~~gsyk~pre~~W~~Gv~l~~l~m~~aftGY~Lpw~q~sywa~~V~~~l~~~iP 156 (212)
T d1q90b_ 94 MVLHVFRVYLTGGFKRPRELTWVTGVIMAVCTVSFGVTGYSLPWDQVGYWAVKIVTGVPDAIP 156 (212)
T ss_dssp HHHHHHHHHTTTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHGGGGST
T ss_pred HHHHHHHHHHcCcccCcccceehHhHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHHHh
Confidence 444555666654 46667777777666666666666677778899999999999998876553
No 5
>d2jeka1 a.255.1.1 (A:6-145) Hypothetical protein Rv1873 (MT1922) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.36 E-value=2.7e+02 Score=18.85 Aligned_cols=95 Identities=15% Similarity=0.181 Sum_probs=52.4
Q ss_pred HHhhhHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH-HHH
Q 020086 123 GMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLF-AYA 201 (331)
Q Consensus 123 gl~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~a~~~l~i~~~~~~-~~~ 201 (331)
|+|. +-.++.||-++.++++.++..-+.-.=..-+.-.+.-.-......+||...+. .. ..-+.......+ -..
T Consensus 42 GLG~---S~~a~~YaI~sl~EA~AYL~HPvLG~RL~ec~~~ll~~~~~s~~~IfG~~D~l-Kl-rSsmTLF~~a~~~~~~ 116 (140)
T d2jeka1 42 GLGS---SPLAVRYGISSLEEAQAYLQHDLLGPRLHECTGLVNQVQGRSIEEIFGPPDDL-KL-CSSMTLFARATDANQD 116 (140)
T ss_dssp TSCC---SHHHHHTSBCSHHHHHHHHHSTTHHHHHHHHHHHHHHCCSCCHHHHSCTTHHH-HH-HHHHHHHHHHCSCCHH
T ss_pred ccCc---CHHHHHhccCCHHHHHHHHhChHhHHHHHHHHHHHHHccCCCHHHHCCChhHH-HH-HhHHHHHHHhCCCchH
Confidence 4554 34789999999999999987654322221111111122334556677664332 21 111222222211 225
Q ss_pred HHHHHHHHHhhcCchhHHHHH
Q 020086 202 LNFPMVKFLQAQSKIMVLAVI 222 (331)
Q Consensus 202 ~~~~~~~~l~~~g~~~~~~~~ 222 (331)
+..++..++.|..|.+..-..
T Consensus 117 F~~~L~~~f~G~~d~~Tl~~L 137 (140)
T d2jeka1 117 FVALLAKYYGGGEDRRTVALL 137 (140)
T ss_dssp HHHHHHHHSTTCCCHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHH
Confidence 677888888899888776543
No 6
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.62 E-value=5.4e+02 Score=18.97 Aligned_cols=14 Identities=0% Similarity=0.173 Sum_probs=5.7
Q ss_pred HHHHHHHHhhcCch
Q 020086 203 NFPMVKFLQAQSKI 216 (331)
Q Consensus 203 ~~~~~~~l~~~g~~ 216 (331)
...+.|+.---|+.
T Consensus 111 ~~af~GY~Lpw~qm 124 (246)
T d1ppjc2 111 ATAFMGYVLPWGQM 124 (246)
T ss_dssp HHHHHHHHTTCBHH
T ss_pred HHHHeeccCCCcch
Confidence 33344444444433
No 7
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=5.36 E-value=2e+02 Score=13.59 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 020086 249 AVALNASWWFIDITR 263 (331)
Q Consensus 249 a~a~~~s~~~~~~~~ 263 (331)
|++..++.++.++.+
T Consensus 16 wlafslamlfvfial 30 (34)
T d1xmeb2 16 WLAFSLAMLFVFIAL 30 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555444433
No 8
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=4.59 E-value=7.4e+02 Score=19.39 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHH-HHhHHHHHHHHHhHH
Q 020086 59 FSREFLKEGKKLWY-LAGPAIFMTICQYPL 87 (331)
Q Consensus 59 ~~~~~~~~~~~il~-~~~P~~~~~~~~~l~ 87 (331)
..+...+.+-+++| .-.|.....+...+.
T Consensus 31 ~l~~~g~lFi~lL~m~v~PLIf~sii~gi~ 60 (405)
T d2nwwa1 31 YVKPFGDLFVRLLKMLVMPIVFASLVVGAA 60 (405)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677778888 455555555554443
No 9
>d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=3.11 E-value=2.5e+02 Score=14.65 Aligned_cols=18 Identities=17% Similarity=0.431 Sum_probs=9.4
Q ss_pred HHHHHHcCCChHHHHHHH
Q 020086 170 QQILSLIGQTQEISNAAG 187 (331)
Q Consensus 170 ~~i~~l~~~~~~~~~~a~ 187 (331)
+.+++.|++++.+.+.+.
T Consensus 16 erllrafgnpervkqlar 33 (55)
T d2csba3 16 ERLLRAFGNPERVKQLAR 33 (55)
T ss_dssp HHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 445566665555544443
No 10
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=2.88 E-value=3.8e+02 Score=18.60 Aligned_cols=90 Identities=10% Similarity=-0.126 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcchHHHHHHHH
Q 020086 72 YLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRS 151 (331)
Q Consensus 72 ~~~~P~~~~~~~~~l~~~i~~~~i~~lg~~~~aa~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~~~~ 151 (331)
++|...++..-......++-..+..+.++..-..-................-.++.+....-++..+||.++.+.....+
T Consensus 8 ~~G~w~Fi~se~~~F~~lf~~y~~~~~~~~~~~~~~~~~~~~~~~~nT~vLl~SS~~~~~a~~~~~~~~~~~~~~~L~~t 87 (185)
T d1fftc_ 8 IFGFWIYLMSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKNNKSQVISWLALT 87 (185)
T ss_dssp HHHHHTTHHHHTTHHHHHHHHHTTTTTTCCCSCCCCCCTTHHHHHHHHHHHGGGTTTTTSGGGTTTTCCGGGGTHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 020086 152 WIILITTALM 161 (331)
Q Consensus 152 ~~~~~~~~~~ 161 (331)
..++.++...
T Consensus 88 ~~lG~~Fl~~ 97 (185)
T d1fftc_ 88 WLFGAGFIGM 97 (185)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Done!