BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020087
         (331 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
           Perniciosa In Complex With Cyclosporin A
 pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
           Perniciosa In Complex With Cyclosporin A
          Length = 164

 Score = 30.4 bits (67), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 96  EMVPGKRFDRYHEL--GQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLH 147
           E VP K    + EL  GQH FG K  ++  V  Q +++ G    +  TGGKS++
Sbjct: 26  EAVP-KTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIY 78


>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
           Perniciosa
          Length = 164

 Score = 30.4 bits (67), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 96  EMVPGKRFDRYHEL--GQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLH 147
           E VP K    + EL  GQH FG K  ++  V  Q +++ G    +  TGGKS++
Sbjct: 27  EAVP-KTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIY 79


>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
          Length = 460

 Score = 27.7 bits (60), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 69  GWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHE 108
           G G GVA  I+ WI+ L  L+ +V    +   K F+ +H+
Sbjct: 192 GVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHK 231


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,970,112
Number of Sequences: 62578
Number of extensions: 394859
Number of successful extensions: 660
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 659
Number of HSP's gapped (non-prelim): 9
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)