Query 020087
Match_columns 331
No_of_seqs 118 out of 1103
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 06:54:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00206 amino acid transporte 100.0 6.6E-43 1.4E-47 328.1 24.5 285 39-331 59-353 (467)
2 KOG1303 Amino acid transporter 100.0 4.1E-42 8.9E-47 314.5 22.5 296 24-330 22-321 (437)
3 KOG1304 Amino acid transporter 100.0 6.9E-41 1.5E-45 301.6 21.1 281 36-331 43-337 (449)
4 PF01490 Aa_trans: Transmembra 100.0 2E-41 4.4E-46 315.7 2.6 287 38-331 1-289 (409)
5 PLN03074 auxin influx permease 100.0 9.1E-34 2E-38 265.3 20.2 273 38-331 44-328 (473)
6 KOG1305 Amino acid transporter 100.0 4.5E-33 9.8E-38 253.9 14.2 283 37-331 3-296 (411)
7 KOG4303 Vesicular inhibitory a 100.0 8.8E-33 1.9E-37 236.1 4.9 280 34-331 111-395 (524)
8 COG0814 SdaC Amino acid permea 100.0 9.7E-29 2.1E-33 228.3 23.9 264 36-311 5-269 (415)
9 PRK10483 tryptophan permease; 99.9 2.7E-20 5.8E-25 169.8 22.7 279 36-329 7-298 (414)
10 PF03222 Trp_Tyr_perm: Tryptop 99.9 7.6E-20 1.6E-24 168.1 23.5 276 39-329 2-290 (394)
11 TIGR00837 araaP aromatic amino 99.9 1.8E-20 3.9E-25 173.1 18.5 269 46-329 3-284 (381)
12 PRK09664 tryptophan permease T 99.9 1.5E-19 3.2E-24 164.7 22.5 277 39-329 8-299 (415)
13 PRK15132 tyrosine transporter 99.8 2.1E-18 4.6E-23 157.9 21.6 271 41-329 4-287 (403)
14 PRK13629 threonine/serine tran 99.7 2.4E-16 5.1E-21 144.0 20.4 278 47-329 26-331 (443)
15 TIGR00814 stp serine transport 99.7 7.5E-16 1.6E-20 141.5 21.8 276 46-329 9-296 (397)
16 PRK10435 cadB lysine/cadaverin 99.7 8.6E-15 1.9E-19 137.5 21.9 243 36-295 3-246 (435)
17 PRK10655 potE putrescine trans 99.7 6.7E-15 1.5E-19 138.5 20.6 242 36-293 4-246 (438)
18 TIGR00906 2A0303 cationic amin 99.6 4.7E-14 1E-18 135.8 23.1 248 35-292 25-287 (557)
19 PRK10249 phenylalanine transpo 99.6 3.2E-14 6.9E-19 134.4 18.4 240 35-292 18-265 (458)
20 PRK10644 arginine:agmatin anti 99.6 7.4E-14 1.6E-18 131.6 20.7 244 35-295 5-250 (445)
21 TIGR00909 2A0306 amino acid tr 99.6 1.5E-13 3.3E-18 129.0 22.4 244 37-293 2-252 (429)
22 TIGR00905 2A0302 transporter, 99.6 1.1E-13 2.3E-18 131.5 21.4 247 36-295 5-257 (473)
23 PRK11387 S-methylmethionine tr 99.6 1.5E-13 3.2E-18 130.5 22.3 243 36-295 12-265 (471)
24 TIGR01773 GABAperm gamma-amino 99.6 8.5E-14 1.8E-18 131.5 20.2 241 35-294 9-259 (452)
25 PRK15049 L-asparagine permease 99.6 1.4E-13 3.1E-18 131.1 21.5 242 36-294 26-278 (499)
26 PRK11021 putative transporter; 99.6 2.3E-13 4.9E-18 127.0 21.6 231 40-290 1-231 (410)
27 TIGR00930 2a30 K-Cl cotranspor 99.6 1.4E-13 3.1E-18 138.7 20.5 247 35-291 73-335 (953)
28 PRK11049 D-alanine/D-serine/gl 99.6 1.4E-13 3.1E-18 130.4 19.0 241 34-292 16-267 (469)
29 PRK10836 lysine transporter; P 99.6 8E-13 1.7E-17 126.0 23.1 244 35-295 12-264 (489)
30 KOG1287 Amino acid transporter 99.6 3.9E-14 8.6E-19 129.8 13.2 242 35-292 9-260 (479)
31 PRK10238 aromatic amino acid t 99.6 3.4E-13 7.4E-18 127.4 19.4 236 35-288 9-252 (456)
32 TIGR00911 2A0308 L-type amino 99.6 3.3E-13 7.1E-18 129.1 19.0 249 34-294 38-293 (501)
33 TIGR00908 2A0305 ethanolamine 99.5 1.3E-12 2.9E-17 123.1 22.2 239 35-290 4-245 (442)
34 TIGR00912 2A0309 spore germina 99.5 3.6E-13 7.8E-18 123.5 17.3 237 38-298 1-240 (359)
35 PRK10580 proY putative proline 99.5 1.4E-12 3E-17 123.4 20.6 239 35-291 6-254 (457)
36 PRK10746 putative transport pr 99.5 1.7E-12 3.6E-17 122.8 20.7 243 35-295 7-259 (461)
37 TIGR03810 arg_ornith_anti argi 99.5 2.5E-12 5.5E-17 121.9 21.8 245 38-296 1-254 (468)
38 TIGR00913 2A0310 amino acid pe 99.5 3.2E-12 6.8E-17 121.7 21.3 237 37-290 1-251 (478)
39 COG1113 AnsP Gamma-aminobutyra 99.5 1.5E-12 3.3E-17 117.7 17.4 249 35-300 10-272 (462)
40 PRK11357 frlA putative fructos 99.5 1.8E-12 3.9E-17 122.3 18.6 239 35-291 5-250 (445)
41 PRK10197 gamma-aminobutyrate t 99.4 2E-11 4.2E-16 115.1 20.4 224 49-290 3-235 (446)
42 COG0531 PotE Amino acid transp 99.4 2.5E-11 5.4E-16 115.2 21.2 251 35-297 9-262 (466)
43 COG0833 LysP Amino acid transp 99.4 1.1E-11 2.4E-16 114.5 17.6 239 35-288 41-286 (541)
44 PF03845 Spore_permease: Spore 99.4 1E-10 2.2E-15 105.5 19.9 235 39-298 1-236 (320)
45 PF13520 AA_permease_2: Amino 99.3 3.9E-11 8.5E-16 112.6 16.0 242 40-297 1-247 (426)
46 TIGR03428 ureacarb_perm permea 99.3 9E-10 1.9E-14 104.8 24.1 252 35-296 10-273 (475)
47 KOG1286 Amino acid transporter 99.3 1.6E-11 3.6E-16 116.6 11.6 248 34-290 26-286 (554)
48 PF00324 AA_permease: Amino ac 99.2 9.3E-11 2E-15 111.7 11.8 239 49-299 6-263 (478)
49 TIGR00907 2A0304 amino acid pe 99.2 7.5E-09 1.6E-13 98.7 21.9 254 35-296 9-277 (482)
50 PRK15238 inner membrane transp 99.1 1E-08 2.2E-13 98.1 20.7 238 36-291 5-266 (496)
51 KOG3832 Predicted amino acid t 99.1 1.1E-09 2.4E-14 88.3 10.0 211 41-257 13-299 (319)
52 TIGR00910 2A0307_GadC glutamat 99.0 2.6E-08 5.7E-13 95.3 17.1 234 37-289 3-247 (507)
53 TIGR03813 put_Glu_GABA_T putat 98.7 9E-07 2E-11 84.3 18.8 243 39-296 2-254 (474)
54 KOG1289 Amino acid transporter 98.5 9E-06 2E-10 75.8 17.3 251 35-297 45-313 (550)
55 TIGR00800 ncs1 NCS1 nucleoside 98.4 0.00012 2.6E-09 69.1 23.2 251 37-298 11-273 (442)
56 COG3949 Uncharacterized membra 98.0 0.00042 9E-09 60.9 16.3 223 45-296 8-238 (349)
57 PRK11375 allantoin permease; P 98.0 0.0065 1.4E-07 58.0 24.3 241 37-289 24-280 (484)
58 TIGR02119 panF sodium/pantothe 97.9 0.0062 1.3E-07 58.1 22.7 157 35-205 37-199 (471)
59 PF02554 CstA: Carbon starvati 97.8 0.00081 1.8E-08 60.3 14.2 107 39-148 51-157 (376)
60 PRK09442 panF sodium/panthothe 97.8 0.008 1.7E-07 57.5 21.8 157 35-203 38-198 (483)
61 PRK12488 acetate permease; Pro 97.7 0.0072 1.6E-07 58.7 20.6 153 35-201 64-218 (549)
62 KOG1288 Amino acid transporter 97.7 0.00035 7.5E-09 66.7 10.7 221 59-290 88-348 (945)
63 TIGR00813 sss transporter, SSS 97.6 0.0073 1.6E-07 56.4 18.3 151 37-200 2-153 (407)
64 PRK09395 actP acetate permease 97.6 0.014 3.1E-07 56.7 20.6 152 35-200 66-219 (551)
65 COG0591 PutP Na+/proline sympo 97.6 0.024 5.2E-07 54.3 21.6 153 36-200 36-192 (493)
66 TIGR02711 symport_actP cation/ 97.5 0.019 4.2E-07 55.7 20.1 151 36-200 65-217 (549)
67 COG1953 FUI1 Cytosine/uracil/t 97.5 0.1 2.2E-06 49.0 23.3 283 27-323 28-333 (497)
68 TIGR02358 thia_cytX probable h 97.4 0.065 1.4E-06 49.7 21.6 226 43-298 8-234 (386)
69 COG1457 CodB Purine-cytosine p 97.4 0.054 1.2E-06 50.5 20.4 181 106-307 83-267 (442)
70 PRK11017 codB cytosine permeas 97.3 0.066 1.4E-06 50.0 20.9 205 68-297 39-244 (404)
71 TIGR00835 agcS amino acid carr 97.3 0.012 2.5E-07 54.8 14.6 81 38-119 45-132 (425)
72 TIGR00796 livcs branched-chain 97.2 0.015 3.3E-07 53.4 14.6 217 47-294 2-243 (378)
73 TIGR03648 Na_symport_lg probab 97.2 0.049 1.1E-06 53.0 18.9 152 35-199 29-181 (552)
74 KOG2083 Na+/K+ symporter [Inor 97.2 0.00063 1.4E-08 64.1 5.4 233 39-289 29-276 (643)
75 PF02133 Transp_cyt_pur: Perme 97.1 0.0058 1.3E-07 57.7 11.5 242 36-292 5-257 (440)
76 PRK15015 carbon starvation pro 97.1 0.0066 1.4E-07 58.4 11.1 144 43-198 86-230 (701)
77 TIGR02121 Na_Pro_sym sodium/pr 97.0 0.099 2.1E-06 50.1 19.4 156 35-200 33-193 (487)
78 PRK10484 putative transporter; 96.8 0.48 1E-05 45.9 22.0 156 35-200 35-198 (523)
79 PRK15419 proline:sodium sympor 96.7 0.63 1.4E-05 44.8 22.0 154 35-199 37-196 (502)
80 PF00474 SSF: Sodium:solute sy 96.7 0.016 3.4E-07 54.2 10.3 157 37-206 5-163 (406)
81 COG1966 CstA Carbon starvation 96.5 0.026 5.6E-07 53.2 10.2 103 40-145 52-154 (575)
82 KOG2082 K+/Cl- cotransporter K 95.8 0.23 5.1E-06 48.6 13.1 100 49-152 124-227 (1075)
83 COG4147 DhlC Predicted symport 95.6 0.5 1.1E-05 44.1 13.8 224 53-293 57-293 (529)
84 PF05525 Branch_AA_trans: Bran 94.8 0.24 5.2E-06 46.2 9.7 68 104-180 261-328 (427)
85 KOG2466 Uridine permease/thiam 94.6 4.1 8.9E-05 38.4 16.9 267 27-307 43-331 (572)
86 PF05525 Branch_AA_trans: Bran 94.2 1.9 4.1E-05 40.3 14.2 70 42-119 5-77 (427)
87 PF01235 Na_Ala_symp: Sodium:a 94.1 3.3 7.2E-05 38.6 15.4 42 36-79 15-57 (416)
88 PF01566 Nramp: Natural resist 93.7 5.5 0.00012 36.5 17.6 83 105-197 43-127 (358)
89 TIGR00796 livcs branched-chain 93.7 0.38 8.3E-06 44.3 8.5 76 103-188 254-329 (378)
90 PRK00701 manganese transport p 93.4 7.1 0.00015 36.9 18.5 44 105-149 95-138 (439)
91 PHA02764 hypothetical protein; 93.4 5.5 0.00012 35.5 17.0 92 37-133 11-105 (399)
92 COG1114 BrnQ Branched-chain am 93.1 0.9 2E-05 41.8 9.7 105 65-180 226-330 (431)
93 COG1914 MntH Mn2+ and Fe2+ tra 92.8 4.8 0.0001 37.6 14.3 106 39-150 16-122 (416)
94 PRK15433 branched-chain amino 90.3 12 0.00026 35.2 14.1 71 41-119 9-82 (439)
95 COG0733 Na+-dependent transpor 89.2 20 0.00042 33.7 18.0 237 40-288 9-266 (439)
96 PRK15433 branched-chain amino 84.9 5.1 0.00011 37.6 8.2 66 105-180 266-331 (439)
97 PF02028 BCCT: BCCT family tra 81.3 53 0.0011 31.6 13.6 95 106-205 164-261 (485)
98 PRK09950 putative transporter; 80.3 57 0.0012 31.5 13.4 164 38-203 82-269 (506)
99 COG1292 BetT Choline-glycine b 79.1 33 0.00072 33.0 11.3 155 41-200 89-269 (537)
100 COG4145 PanF Na+/panthothenate 76.6 63 0.0014 29.8 14.2 149 37-199 38-192 (473)
101 TIGR01197 nramp NRAMP (natural 73.5 79 0.0017 29.4 14.4 96 47-149 11-108 (390)
102 PF05915 DUF872: Eukaryotic pr 72.5 23 0.0005 26.6 6.9 26 40-65 39-64 (115)
103 KOG2349 Na+:iodide/myo-inosito 72.2 4.5 9.7E-05 39.3 3.8 240 36-296 43-302 (585)
104 PF00209 SNF: Sodium:neurotran 69.8 1.1E+02 0.0024 29.6 15.2 105 176-286 192-299 (523)
105 COG1115 AlsT Na+/alanine sympo 68.7 1.1E+02 0.0023 29.0 14.0 36 35-70 58-94 (452)
106 TIGR00842 bcct choline/carniti 67.9 1.1E+02 0.0025 29.0 12.2 159 40-202 37-221 (453)
107 PRK09928 choline transport pro 66.4 38 0.00083 33.8 8.8 163 39-203 92-276 (679)
108 PRK03356 L-carnitine/gamma-but 63.9 1.4E+02 0.0031 28.8 13.8 162 39-202 85-271 (504)
109 KOG3659 Sodium-neurotransmitte 56.1 2.1E+02 0.0046 28.2 14.8 85 41-130 83-172 (629)
110 KOG1289 Amino acid transporter 53.7 2.2E+02 0.0048 27.7 13.7 47 105-152 326-372 (550)
111 KOG3660 Sodium-neurotransmitte 51.9 2.6E+02 0.0056 28.0 15.0 50 41-90 39-89 (629)
112 PF02468 PsbN: Photosystem II 50.9 18 0.00039 21.8 2.3 28 272-299 4-31 (43)
113 PRK13183 psbN photosystem II r 50.1 21 0.00045 21.8 2.5 29 271-299 6-34 (46)
114 KOG2466 Uridine permease/thiam 48.4 59 0.0013 31.0 6.3 166 115-289 339-514 (572)
115 PLN02680 carbon-monoxide oxyge 46.8 1.4E+02 0.0031 25.5 8.0 87 228-326 47-133 (232)
116 CHL00020 psbN photosystem II p 46.5 18 0.00039 21.7 1.8 28 272-299 4-31 (43)
117 PF07672 MFS_Mycoplasma: Mycop 43.7 2.2E+02 0.0049 24.9 9.0 47 241-289 216-264 (267)
118 COG1114 BrnQ Branched-chain am 36.9 3.6E+02 0.0079 25.3 14.6 71 41-119 6-79 (431)
119 PLN00150 potassium ion transpo 34.4 1.1E+02 0.0024 31.1 6.2 31 234-271 287-317 (779)
120 COG2233 UraA Xanthine/uracil p 28.0 4.5E+02 0.0098 25.0 8.8 97 227-325 241-337 (451)
121 TIGR00909 2A0306 amino acid tr 27.7 5E+02 0.011 24.1 12.3 46 105-151 265-310 (429)
122 PF02028 BCCT: BCCT family tra 26.6 2.1E+02 0.0046 27.5 6.6 62 134-195 401-465 (485)
123 cd08765 Cyt_b561_CYBRD1 Verteb 24.8 3.6E+02 0.0077 21.4 6.8 58 267-326 44-101 (153)
124 TIGR00907 2A0304 amino acid pe 24.8 6E+02 0.013 24.1 13.7 48 105-152 290-337 (482)
125 PF04835 Pox_A9: A9 protein co 24.7 1.9E+02 0.0041 18.3 3.9 29 271-299 23-51 (54)
126 COG5264 VTC1 Vacuolar transpor 24.1 3.3E+02 0.0071 20.7 6.6 57 53-116 47-103 (126)
127 PRK09928 choline transport pro 23.3 7.9E+02 0.017 24.9 11.8 63 133-195 417-485 (679)
128 KOG3533 Inositol 1,4,5-trispho 23.3 5.3E+02 0.011 28.5 8.8 28 271-298 2420-2447(2706)
129 PF05767 Pox_A14: Poxvirus vir 22.7 1.7E+02 0.0037 20.8 3.8 57 236-299 16-72 (92)
130 PHA02680 ORF090 IMV phosphoryl 20.8 3.1E+02 0.0067 19.4 4.7 54 237-296 17-70 (91)
131 PF05781 MRVI1: MRVI1 protein; 20.1 2.4E+02 0.0051 27.4 5.4 61 41-109 460-520 (538)
132 PF09716 ETRAMP: Malarial earl 20.0 77 0.0017 22.3 1.8 39 253-297 42-80 (84)
No 1
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=6.6e-43 Score=328.11 Aligned_cols=285 Identities=19% Similarity=0.241 Sum_probs=235.1
Q ss_pred CCcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCccc
Q 020087 39 NAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKL 118 (331)
Q Consensus 39 ~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~ 118 (331)
+.|..++++|++|+++|+|+|++|++|+++||+.|++++++++.++.|+.+++.++.++ ++ ..+|+|++++++|| +
T Consensus 59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~-~~--~~sY~~la~~~~G~-~ 134 (467)
T PTZ00206 59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK-TN--IRTYEGVARVLLGP-W 134 (467)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CC--CCCHHHHHHHHhCH-H
Confidence 55779999999999999999999999999999999999999999999999999998874 33 35999999999998 5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCC--CC-CccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 020087 119 GLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEP--CK-EIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAV 195 (331)
Q Consensus 119 g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~--~~-~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~~ 195 (331)
+++++++.+.+.++|+|++|+++.+|.+..+++.....+ .. ..++..+.++..++++|++++|++++++++|.++..
T Consensus 135 g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~ 214 (467)
T PTZ00206 135 GSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVS 214 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHH
Confidence 679999999999999999999999999998886432110 00 112334455667789999999999999999999998
Q ss_pred HHHHHHHhhheeeeeecCCCccc---cccc---cccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccc
Q 020087 196 MSLSYSTIAWSASVRKGVQPDVA---YGYK---AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPM 269 (331)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~ 269 (331)
+.+..++.+++....++..++.+ .+.+ .........+++.++++++|||.||.+++++++|| |||+++++
T Consensus 215 ~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M----~~~t~~~~ 290 (467)
T PTZ00206 215 FMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDM----TNRSVGKF 290 (467)
T ss_pred HHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhh----cccchhHH
Confidence 77766666555554443322111 1110 00111223468899999999999999999999999 88888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccCCCCchhhhhCC-CCChHHHHHHHHHHHHHhheeecC
Q 020087 270 WRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSL-EKPTWLIVMANFFVVVHVIGSYQV 331 (331)
Q Consensus 270 ~~~~~~~~~~~~~~y~~~~~~gy~~fg~~~~~~il~~~-~~~~~~~~~~~~~~~i~v~~syPl 331 (331)
.+++..++.+++++|.++|++||++||+++++++++|+ |.++....++++++++.++.+|||
T Consensus 291 ~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL 353 (467)
T PTZ00206 291 VLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYAL 353 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhh
Confidence 89999999999999999999999999999999999999 566788999999999999999996
No 2
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-42 Score=314.54 Aligned_cols=296 Identities=47% Similarity=0.839 Sum_probs=256.0
Q ss_pred hhccccccccccccCCCcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhh---cCC
Q 020087 24 KQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEM---VPG 100 (331)
Q Consensus 24 ~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~---~~~ 100 (331)
++.+++++++...+++.|++++.++.++.++|+|+|++||+++++||..|+++++..++++.||..+|.+|.+. +++
T Consensus 22 ~~~~~~~~~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~ 101 (437)
T KOG1303|consen 22 RKSDVDDWDPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPG 101 (437)
T ss_pred cccccccCCccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 34455556666678889999999999999999999999999999999999999999999999999999998864 345
Q ss_pred cccccHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCC
Q 020087 101 KRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHL 180 (331)
Q Consensus 101 ~~~~~y~~l~~~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~ 180 (331)
+|++.|+|+++++||++. ++++.+++.+..+++++.|.+..+|.+..+++....+.+ ..+.+.|.++++++.+|++++
T Consensus 102 ~r~~~Y~dl~~~afG~~~-~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~-~l~~~~f~iif~~i~~~~s~l 179 (437)
T KOG1303|consen 102 KRRYRYPDLGQAAFGPKG-RLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN-SLDKQYFIIIFGLIVLPLSQL 179 (437)
T ss_pred ccCCChHHHHHHHhCCCc-eEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-cccceehhhhHHHHHHHHHHC
Confidence 566789999999999865 899999999999999999999999999999998874322 344689999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhheeeeeecCCCc-cccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCC
Q 020087 181 PNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPD-VAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPS 259 (331)
Q Consensus 181 ~~~~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~ 259 (331)
+|++.+++.|..+.+..+.+..+.+...+.++.... .+.+.+... .....++++|++.|+|.||.++|+++++|
T Consensus 180 p~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~---~~~~~f~a~g~iaFaf~gH~v~peIq~tM-- 254 (437)
T KOG1303|consen 180 PNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLG---TIPTVFTALGIIAFAYGGHAVLPEIQHTM-- 254 (437)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCC---CCcchhhhhhheeeeecCCeeeeehHhhc--
Confidence 999999999999999998888888777777764432 212221111 11111899999999999999999999999
Q ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchhhhhCCCCChHHHHHHHHHHHHHhheeec
Q 020087 260 TPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQ 330 (331)
Q Consensus 260 ~~~~p~~~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~v~~syP 330 (331)
|+|++ ++|++..++.+++.+|+.+++.||++|||+++|+++.|+.++.|+...+++++.+|++.+|+
T Consensus 255 --k~p~~--f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~ 321 (437)
T KOG1303|consen 255 --KSPPK--FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQ 321 (437)
T ss_pred --CCchh--hhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhh
Confidence 88888 66999999999999999999999999999999999999965689999999999999999886
No 3
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=6.9e-41 Score=301.60 Aligned_cols=281 Identities=21% Similarity=0.315 Sum_probs=244.6
Q ss_pred ccCCCcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcC---CcccccHHHHHHH
Q 020087 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVP---GKRFDRYHELGQH 112 (331)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~---~~~~~~y~~l~~~ 112 (331)
.++..|..++..++.+.++|+|+|++|++|+++|+..|.+..++++.++.||++.+++|.+... +....+|++.++.
T Consensus 43 ~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~ 122 (449)
T KOG1304|consen 43 REHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAES 122 (449)
T ss_pred CCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHH
Confidence 3456889999999999999999999999999999999999999999999999999999986422 2224678877776
Q ss_pred Hh----------CccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCC
Q 020087 113 AF----------GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPN 182 (331)
Q Consensus 113 ~~----------G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~ 182 (331)
++ |+ ++|.+++.++.++++|.|++|++++++++.++.+... ...++.+.++.+..+..++++++||
T Consensus 123 a~~~~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~---~~~~s~~~~i~~~~~~~lll~~Ir~ 198 (449)
T KOG1304|consen 123 AMEGGPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHS---PGVLSVRLYILIQLPPLLLLNLIRN 198 (449)
T ss_pred HHcCCcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccC---CCCccHHHHHHHHHHHHHHHHHHHh
Confidence 65 33 5679999999999999999999999999999999432 2357889999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhheeeeeecCCCccccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCC
Q 020087 183 FNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPE 262 (331)
Q Consensus 183 ~~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~ 262 (331)
++.+...|.++.++.+..+.++..+.+.... +.+..+...++.+++.++|+.+|||+|+.++.|+.++| |
T Consensus 199 Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~------~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~M----k 268 (449)
T KOG1304|consen 199 LKILSPFSLFANVFILVGLAIIMYYLVQDLP------PTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSM----K 268 (449)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHhccC------CccccccccchhhhHHHHHHHHHHhccceEEEehhhcc----c
Confidence 9999999999999888877777765554432 12223345568999999999999999999999999999 9
Q ss_pred CCCCcc-chhHHHHHHHHHHHHHHHHHHHHhhccCCCCchhhhhCCCCChHHHHHHHHHHHHHhheeecC
Q 020087 263 KPSKGP-MWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQV 331 (331)
Q Consensus 263 ~p~~~~-~~~~~~~~~~~~~~~y~~~~~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~v~~syPl 331 (331)
+|+++. ..+++..++.+++++|+.+|++||++||+++++.+++|+|+ +++...++++++++++.+|||
T Consensus 269 ~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pL 337 (449)
T KOG1304|consen 269 KPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPL 337 (449)
T ss_pred ChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCch
Confidence 998843 22888899999999999999999999999999999999998 999999999999999999997
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=2e-41 Score=315.74 Aligned_cols=287 Identities=28% Similarity=0.492 Sum_probs=245.8
Q ss_pred CCCcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CcccccHHHHHHHHhCc
Q 020087 38 RNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVP-GKRFDRYHELGQHAFGE 116 (331)
Q Consensus 38 ~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~-~~~~~~y~~l~~~~~G~ 116 (331)
+|.|+++++++++|+++|+|+|++|++++++||+.|++++++++.++.+|.+++.++.+..+ +.+..+|+|++++++||
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 47899999999999999999999999999999999999999999999999999999988543 34467999999999998
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 020087 117 KLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVM 196 (331)
Q Consensus 117 ~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~~~ 196 (331)
+. ++++++++.+.++|.+++|++..+|.+.++++...++ ...++..+.++..++++|++++|+++++++.+.++.++
T Consensus 81 ~~-~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~--~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~ 157 (409)
T PF01490_consen 81 KG-KWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD--LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFS 157 (409)
T ss_pred cc-cccccchheeccccccceeEEEeeeeeeccccccccc--ccccccccccccccccccccccchhhHHHHHhhhhhhc
Confidence 65 5999999999999999999999999999999876532 23566788888999999999999999999999999997
Q ss_pred HHHHHHhhheeeeeecCCCccccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCC-ccchhHHHH
Q 020087 197 SLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSK-GPMWRGVVV 275 (331)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~-~~~~~~~~~ 275 (331)
.+..+.+...........++.+...+......++.++++++++.+|||.||.++|++.+|| |+|++ ++++++..+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m----~~~~~~~~~~~~~~~ 233 (409)
T PF01490_consen 158 IFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEM----KDPSKFKKMKKVLSI 233 (409)
T ss_pred cceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeec----cCCccccccceeeee
Confidence 7654222222222222222111111112234577899999999999999999999999999 88888 678899999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCchhhhhCCCCChHHHHHHHHHHHHHhheeecC
Q 020087 276 AYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQV 331 (331)
Q Consensus 276 ~~~~~~~~y~~~~~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~v~~syPl 331 (331)
++.+++++|..+|+.||++||+++++|+++|++++++...++++++.++++.+||+
T Consensus 234 s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl 289 (409)
T PF01490_consen 234 SMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPL 289 (409)
T ss_pred hhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhcccc
Confidence 99999999999999999999999999999999987889999999999999999996
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=9.1e-34 Score=265.29 Aligned_cols=273 Identities=16% Similarity=0.244 Sum_probs=220.6
Q ss_pred CCCcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhh----cC--Cc--c--cccHH
Q 020087 38 RNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEM----VP--GK--R--FDRYH 107 (331)
Q Consensus 38 ~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~----~~--~~--~--~~~y~ 107 (331)
.+.+..++.+++++..+|.|+|+||++|+++||+.|++.+++.++++.||.+++.++... .+ +. + ..+|.
T Consensus 44 ~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~ 123 (473)
T PLN03074 44 HGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWF 123 (473)
T ss_pred CCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHH
Confidence 367889999999999999999999999999999999999999999999999999987432 11 11 1 12678
Q ss_pred HHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHH
Q 020087 108 ELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIA 187 (331)
Q Consensus 108 ~l~~~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~ 187 (331)
|+++..+||+++ .+......+..++.|+.|++..++.+..+. ..++.+.|.+++.++.+|++++|++++++
T Consensus 124 e~~~~~~G~~~~-~~~~~~~~v~l~~~~v~~li~~~~~~~~l~--------~~~~~~~~~~i~~~v~~~~~~i~sl~~l~ 194 (473)
T PLN03074 124 EVLDGLLGPYWK-NVGLAFNCTFLLFGSVIQLIACASNIYYIN--------DNLDKRTWTYIFGACCATTVFIPSFHNYR 194 (473)
T ss_pred HHHHHhcChhHH-HHHHHHHhhhhHHHHHHHHHHHhhhhhhhC--------CCcCCCeEEeehHHHHHHHHHccCHHHHH
Confidence 999999998655 777777888889989999998777665542 13566888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhheeeeeecCCCccccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCc
Q 020087 188 GVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKG 267 (331)
Q Consensus 188 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~ 267 (331)
++|.+++.+++...+.+++..+..+..++.+. ..+.++..++.++++++|+|+||.++|++++|| |||+++
T Consensus 195 ~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~-----~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M----~~P~~F 265 (473)
T PLN03074 195 IWSFLGLLMTTYTAWYMTIAALSHGQVEGVKH-----SGPTKLVLYFTGATNILYTFGGHAVTVEIMHAM----WKPQKF 265 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-----CCchhHHHHHHHHHHHHHHhcccccHHHHHHhc----cChhcc
Confidence 99999998765543344443433332222111 123467788888999999999999999999999 999987
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhccCCCCc--hhhhhCCCCChHHHHHHHHHHHHHhheeecC
Q 020087 268 PMWRGVVVAYIVVALCYFPVALIGYWMFGNKVE--DNILLSLEKPTWLIVMANFFVVVHVIGSYQV 331 (331)
Q Consensus 268 ~~~~~~~~~~~~~~~~y~~~~~~gy~~fg~~~~--~~il~~~~~~~~~~~~~~~~~~i~v~~syPl 331 (331)
+ ++..++...++.+|+.+++.||+.|||+++ ++.++|+|++. ...+++++++++++.+||+
T Consensus 266 ~--~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~-~~~~~~~~~~i~~~~sy~l 328 (473)
T PLN03074 266 K--YIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSG-WRDAAVILMLIHQFITFGF 328 (473)
T ss_pred c--chHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCch-HHHHHHHHHHHHHHHHHHH
Confidence 6 888899999999999999999999999876 46787898644 5789999999999999975
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=4.5e-33 Score=253.88 Aligned_cols=283 Identities=22% Similarity=0.357 Sum_probs=235.6
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCc
Q 020087 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGE 116 (331)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~ 116 (331)
+++.|.+.+++++.|+++|+|++++|++|++.|.+.|+++....+.++.++.+++.++.... +.+ +|++++++.+|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~-~~~--ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKS-GER--TYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhc-CCC--CHHHHHHHHcCC
Confidence 45678899999999999999999999999999999999999999999999999999999854 333 999999999997
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCC---Cccchh-HHHHHHHHHHHhcCCCCchhHHHHHHH
Q 020087 117 KLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCK---EIKLSY-FIMIFASVHFVLSHLPNFNAIAGVSLA 192 (331)
Q Consensus 117 ~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~---~~~~~~-~~~v~~~~~~pl~~~~~~~~l~~~s~~ 192 (331)
.|+....+.......| +++|++.++|.+..+.......+.. +.++.. +.++...+++|+++.|+++++++.|.+
T Consensus 80 -~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~ 157 (411)
T KOG1305|consen 80 -LGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSAL 157 (411)
T ss_pred -CceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 6666666666666666 7999999999999776665532211 234444 678888899999999999999999999
Q ss_pred HHHHHHHHHHhhheeeeeecC-CCccccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccchh
Q 020087 193 AAVMSLSYSTIAWSASVRKGV-QPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWR 271 (331)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~ 271 (331)
+....+..+.++++....... .+...+ ..+....+++.+.++++.+|+|.||.++.++++|| |||+++++.+
T Consensus 158 s~~~~~~fv~~vv~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El----~~~s~~~i~~ 230 (411)
T KOG1305|consen 158 SLASVVYFVVLVVYKYFQGPCALGRLSY---LVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNEL----KDRSVKKIQR 230 (411)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCccc---ccCCcchhhhhhhhhhhhheeeeccccceeeeeee----eCchHHHHHH
Confidence 999888887777776655322 011111 11222233789999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCchhhhhCCCCChHH------HHHHHHHHHHHhheeecC
Q 020087 272 GVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWL------IVMANFFVVVHVIGSYQV 331 (331)
Q Consensus 272 ~~~~~~~~~~~~y~~~~~~gy~~fg~~~~~~il~~~~~~~~~------~~~~~~~~~i~v~~syPl 331 (331)
+...+...+.++|..+|.+||++||+++.+|++.++++.+-. ...+|..+.++++.++|+
T Consensus 231 v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi 296 (411)
T KOG1305|consen 231 VSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPI 296 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999764444 478999999999998884
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.97 E-value=8.8e-33 Score=236.08 Aligned_cols=280 Identities=19% Similarity=0.267 Sum_probs=247.4
Q ss_pred ccccCCCcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc-----ccccHHH
Q 020087 34 ITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGK-----RFDRYHE 108 (331)
Q Consensus 34 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~-----~~~~y~~ 108 (331)
++.+.|++-+|+.+++.|++-|.=++++|++....|+ .++..++.++.++.||..+|++|....+.. .+++|.+
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGy-w~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYva 189 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGY-WSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVA 189 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcch-hHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHH
Confidence 4556789999999999999999999999999999998 599999999999999999999998743211 1579999
Q ss_pred HHHHHhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHH
Q 020087 109 LGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAG 188 (331)
Q Consensus 109 l~~~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~ 188 (331)
++...++|+.|-..+.+.+.+....+|+.|++..+|.+..-+|... .++.-|+++..+.++|+.++|+++..+.
T Consensus 190 IA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~s------vd~~sWm~i~~a~LLpc~FLk~Lk~VS~ 263 (524)
T KOG4303|consen 190 IADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLS------VDKASWMMITSASLLPCSFLKDLKIVSR 263 (524)
T ss_pred HHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCC------ccccchhhhhhHHHhhhHHHHHHHHHHH
Confidence 9999999988867788889999999999999999999998877643 5668899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhheeeeeecCCCccccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCcc
Q 020087 189 VSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGP 268 (331)
Q Consensus 189 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~ 268 (331)
+|.+....-+..-++++.+|+-... |+++.......+...++..+|+++|+|.-|...|++..+| +||++++
T Consensus 264 lSf~ct~sH~viN~i~v~YCLs~~~----dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM----~~ps~Fn 335 (524)
T KOG4303|consen 264 LSFFCTISHLVINLIMVLYCLSFVS----DWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNM----KNPSQFN 335 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----hccceeEEEEEEcccCceEEEEEEEeeeceeecccccccc----CChhHhe
Confidence 9999988888777777777765432 3455445556677888999999999999999999999999 9999988
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccCCCCchhhhhCCCCChHHHHHHHHHHHHHhheeecC
Q 020087 269 MWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQV 331 (331)
Q Consensus 269 ~~~~~~~~~~~~~~~y~~~~~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~v~~syPl 331 (331)
-.+.|+-+...++-..+|.+||++|++.+++.|++|+|+ ..+..++++++++..+.||||
T Consensus 336 --~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~-qsfk~~VN~fLV~KALLSYPL 395 (524)
T KOG4303|consen 336 --VMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPN-QSFKILVNLFLVVKALLSYPL 395 (524)
T ss_pred --eeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCc-cchhhhhhHHHHHHHHHcCCc
Confidence 778999999999999999999999999999999999996 568999999999999999997
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.97 E-value=9.7e-29 Score=228.27 Aligned_cols=264 Identities=20% Similarity=0.232 Sum_probs=223.0
Q ss_pred ccCCCcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhC
Q 020087 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFG 115 (331)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G 115 (331)
.+.+.+..++++++.++++|+|+|++|++++..|+..+++.+++.+..++++.++++|+..+.++.+ .++.+++++.+|
T Consensus 5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~-~~~~~~~~~~~G 83 (415)
T COG0814 5 MKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGK-ASITSLVEDYLG 83 (415)
T ss_pred ccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ccHHHHHHHHhC
Confidence 4556788999999999999999999999999999999999999999999999999999998766542 489999999999
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 020087 116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAV 195 (331)
Q Consensus 116 ~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~~ 195 (331)
|+++ +++++.+.+.+++.+.+|.+..++.+++.++.....+. .++....++++.++.+++..++...++..+.+...
T Consensus 84 ~~~~-~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~--~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~ 160 (415)
T COG0814 84 KKGG-ILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNP--LPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFG 160 (415)
T ss_pred cchH-HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCC--cchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 9665 99999999999999999999999999999998553211 56778888888888899999999999999999998
Q ss_pred HHHHHHHhhheeeeeecCCCccccccccccc-cchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccchhHHH
Q 020087 196 MSLSYSTIAWSASVRKGVQPDVAYGYKAKTA-AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV 274 (331)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~ 274 (331)
.+..+++...+....- +.+........ ...+..+..++|+++|||+||+++|++.+|| |++++++.+|+..
T Consensus 161 ~v~~~~~l~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~----~~~~~~~~~k~~~ 232 (415)
T COG0814 161 KVIYLVLLVVYLIPHW----NPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYM----RKNSKKAVRKAIL 232 (415)
T ss_pred HHHHHHHHHHHHhccc----CHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHh----ccchhHHHHHHHH
Confidence 6666555444433221 11111111111 3678899999999999999999999999999 7777756889999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCchhhhhCCCCCh
Q 020087 275 VAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPT 311 (331)
Q Consensus 275 ~~~~~~~~~y~~~~~~gy~~fg~~~~~~il~~~~~~~ 311 (331)
.+..+..++|+.+++.+|..+|++++++++++.++++
T Consensus 233 ~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~ 269 (415)
T COG0814 233 IGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNI 269 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchH
Confidence 9999999999999999999999999999999986543
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.87 E-value=2.7e-20 Score=169.77 Aligned_cols=279 Identities=15% Similarity=0.133 Sum_probs=194.0
Q ss_pred ccCCCcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhC
Q 020087 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFG 115 (331)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G 115 (331)
++++.+.+++.+++.+++||+|+|++|.+.++.|+..+.++++++|.++.+|..++.|...+.++. .++.+++++.+|
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g--~~~~tma~~~LG 84 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIG--SSFDTITKDLLG 84 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCHHHHHHHHcC
Confidence 456788999999999999999999999999999999999999999999999999999998765543 589999999999
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 020087 116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAV 195 (331)
Q Consensus 116 ~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~~ 195 (331)
|+ ++.+.++...+..|+.+.+|+...++.+.+.++... ...++..-.++++++.-.+... ..+...+++.+-..
T Consensus 85 ~~-g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~----~~i~~~~~~llF~~~~~~iv~~-gt~~vd~~n~~l~~ 158 (414)
T PRK10483 85 KG-WNVVNGISIAFVLYILTYAYISASGSILHHTFAEMS----LNVPARAAGFGFALLVAFVVWL-STKAVSRMTAIVLG 158 (414)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcC----CCCcHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 84 669999999999999999999999999999998622 1123344444444444444432 33444444444333
Q ss_pred HHHHHHHhhheeeeeecCCCccccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccchhHHHH
Q 020087 196 MSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVV 275 (331)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~ 275 (331)
..+...+..+....-+.. .+...+. .......+..++.+++++++||+.|+++|++.+.+ ++..| +.+|++.+
T Consensus 159 ~~i~~f~~~~~~l~~~i~-~~~L~~~-~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~----~~d~~-kir~~I~i 231 (414)
T PRK10483 159 AKVITFFLTFGSLLGHVQ-PATLFNV-AESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYY----GKDPK-TIVKCLVY 231 (414)
T ss_pred HHHHHHHHHHHHHHhhcC-HHHHhcc-ccccchhHHHHHHHHHHHHhhccCCCcchHHHHHh----CcCHH-HHHHHHHH
Confidence 322222222221111111 1000000 01122345678899999999999999999999998 43333 57799999
Q ss_pred HHHHHHHHHHHH--HHHHhhc---------cCCCCch--hhhhCCCCChHHHHHHHHHHHHHhheee
Q 020087 276 AYIVVALCYFPV--ALIGYWM---------FGNKVED--NILLSLEKPTWLIVMANFFVVVHVIGSY 329 (331)
Q Consensus 276 ~~~~~~~~y~~~--~~~gy~~---------fg~~~~~--~il~~~~~~~~~~~~~~~~~~i~v~~sy 329 (331)
+..+..++|++. ++.|-.. -+++.+. +.+.+..++.+...+..++..+++.+||
T Consensus 232 Gs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSF 298 (414)
T PRK10483 232 GTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSF 298 (414)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 999999999974 3333222 2333321 1222223445667788888888887775
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.86 E-value=7.6e-20 Score=168.11 Aligned_cols=276 Identities=15% Similarity=0.260 Sum_probs=194.1
Q ss_pred CCcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCccc
Q 020087 39 NAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKL 118 (331)
Q Consensus 39 ~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~ 118 (331)
+.+.+++++.+.+++||+|+|++|++....|...+.+.+++++..+++++.++.|...+.++ ..++.+++++.+||+
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~--~~~~~~~a~~~lG~~- 78 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE--GSSLTSMAEKYLGKK- 78 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHhChH-
Confidence 45779999999999999999999999999999999999999999999999999999876555 359999999999985
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHH
Q 020087 119 GLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSL 198 (331)
Q Consensus 119 g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~~~~~ 198 (331)
++++..+...+..++.+++|....++.+.+.++...+ ...++....+++.++...+... .-+...+++.+-+...+
T Consensus 79 g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~---~~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~i 154 (394)
T PF03222_consen 79 GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG---TDLSPWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGMI 154 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 4599999999999999999999999999999988652 1123233333333332222221 33334444444333222
Q ss_pred HHHHhhheeeeeecCCCccccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccchhHHHHHHH
Q 020087 199 SYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYI 278 (331)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~ 278 (331)
..........+-+. +.+.-....+...++...+.++|+.++||..|+++|++.+.+ ++. +++.+|++.++..
T Consensus 155 ~~~~~l~~~~~p~~---~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~----~~d-~~k~~~ai~~Gs~ 226 (394)
T PF03222_consen 155 ISFIILVVYLIPHW---NPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYL----GGD-PKKIRKAIIIGSL 226 (394)
T ss_pred HHHHHHHHHHhhhc---CHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHh----Ccc-HHHHHHHHHHHHH
Confidence 22222222222111 111111112234688889999999999999999999999999 433 3357799999999
Q ss_pred HHHHHHHHHH--HHHhh---------ccCCCCch--hhhhCCCCChHHHHHHHHHHHHHhheee
Q 020087 279 VVALCYFPVA--LIGYW---------MFGNKVED--NILLSLEKPTWLIVMANFFVVVHVIGSY 329 (331)
Q Consensus 279 ~~~~~y~~~~--~~gy~---------~fg~~~~~--~il~~~~~~~~~~~~~~~~~~i~v~~sy 329 (331)
+..++|++.- +.|-. .-+.+..+ ..+.+..++.+...+..++..+++.+||
T Consensus 227 i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSF 290 (394)
T PF03222_consen 227 IPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSF 290 (394)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHH
Confidence 9999998753 33311 22222221 3444555567788888999998888875
No 11
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.86 E-value=1.8e-20 Score=173.11 Aligned_cols=269 Identities=14% Similarity=0.125 Sum_probs=193.7
Q ss_pred HHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCccccchhhHH
Q 020087 46 AFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVP 125 (331)
Q Consensus 46 ~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~~ 125 (331)
+.+++++++|+|+|.+|..+++.|...+++.+++.++++.++..++.|...+.|+.+ ++.+++++++||+.+ ++..+
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~--~~~~~~~~~~G~~~g-~~~~~ 79 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGA--SFNTIAKDLLGKTGN-IIAGL 79 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHhCHHHH-HHHHH
Confidence 456789999999999999999999999999999999999999999999988777544 899999999998655 99999
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHhhh
Q 020087 126 QQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAW 205 (331)
Q Consensus 126 ~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~ 205 (331)
...+.++..+.+|.+..++++.++++..... ..+.....++..+++.+ ...+..+...+++.+.+...+..++.++
T Consensus 80 ~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~v~~~-l~~~G~~~~~~v~~i~~~~~l~~l~~~i 155 (381)
T TIGR00837 80 SLLFVLYILTYAYISGGGSILSRLIGEYFGF---PWSARAIVLIFTVLFGS-FVWLSTSAVDRITRVLIFGKIIAFALVF 155 (381)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHhcCC---CccHHHHHHHHHHHHHH-HHHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998864421 12333333333333333 3345667777777777776555444443
Q ss_pred eeeeeecCCCccccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccchhHHHHHHHHHHHHHH
Q 020087 206 SASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYF 285 (331)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~y~ 285 (331)
+....+....+ ..+.......+.++..+++...++|++|.+++.+.+|+ +|+ +|+++|++.++..+++++|+
T Consensus 156 i~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~----~~~-~k~i~raii~g~~i~~~lY~ 227 (381)
T TIGR00837 156 SGLLPHVKGDL---LLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYY----DGN-VKKVKKSILIGSAIALVLYI 227 (381)
T ss_pred HHHHhhccHHH---HhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHh----ccC-HHHHHHHHHHHHHHHHHHHH
Confidence 33332211111 10100112356788899999999999999999999999 766 45799999999999999999
Q ss_pred HHHHHHhhccCCCCch----------h---hhhCCCCChHHHHHHHHHHHHHhheee
Q 020087 286 PVALIGYWMFGNKVED----------N---ILLSLEKPTWLIVMANFFVVVHVIGSY 329 (331)
Q Consensus 286 ~~~~~gy~~fg~~~~~----------~---il~~~~~~~~~~~~~~~~~~i~v~~sy 329 (331)
++........+.+.-. . ...+.-++.+...+..++..+++..|+
T Consensus 228 l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~ 284 (381)
T TIGR00837 228 LWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSF 284 (381)
T ss_pred HHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 9887766666432211 1 122211234566777777777777665
No 12
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.85 E-value=1.5e-19 Score=164.70 Aligned_cols=277 Identities=13% Similarity=0.120 Sum_probs=187.6
Q ss_pred CCcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCccc
Q 020087 39 NAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKL 118 (331)
Q Consensus 39 ~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~ 118 (331)
|.+.+.+.+++.+++||+|+|++|.+.++.|+..+.+.++++|+++.+|+.++.|+..+.++. .++.+++|+.+|| .
T Consensus 8 ~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g--~~l~tma~~~LG~-~ 84 (415)
T PRK09664 8 KHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVG--SSFNTITKDLIGN-T 84 (415)
T ss_pred ccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCHHHHHHHHcCh-H
Confidence 347788999999999999999999999999999999999999999999999999998766543 4899999999998 5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHH
Q 020087 119 GLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSL 198 (331)
Q Consensus 119 g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~~~~~ 198 (331)
|+.+.++...+..|+.+++|+...++.+++.++...+ .+.+.....++++++.-.+... ..+...+.+.+-....+
T Consensus 85 g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~---~~i~~~~~~llF~~~~~~~v~~-gt~~vd~~nr~l~~~~i 160 (415)
T PRK09664 85 WNIISGITVAFVLYILTYAYISANGAIISETISMNLG---YHANPRIVGICTAIFVASVLWI-SSLAASRITSLFLGLKI 160 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhcc---CCCcHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHH
Confidence 6699999999999999999999999999999976321 1122233334444444444332 23444444433333222
Q ss_pred HHHHhhheeeeeecCCCcccccccccc-ccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccchhHHHHHH
Q 020087 199 SYSTIAWSASVRKGVQPDVAYGYKAKT-AAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAY 277 (331)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~ 277 (331)
...+..+....-+...+.-. ..+... ....+..++.++|++++||+.|+++|++.+.++ +|++ +.+|++..+.
T Consensus 161 i~f~~~~~~l~~~i~~~~L~-~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~---~d~~--~~~kaIl~Gs 234 (415)
T PRK09664 161 ISFVIVFGSFFFQVDYSILR-DATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYG---KRKD--KLIKSVVFGS 234 (415)
T ss_pred HHHHHHHHHHhhcccHHHHh-cCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhC---ccHH--HHHHHHHHHH
Confidence 22222121111111111000 000000 011244688899999999999999999999982 3333 3569999998
Q ss_pred HHHHHHHHH--HHHHHh---------hccCCCCchh---hhhCCCCChHHHHHHHHHHHHHhheee
Q 020087 278 IVVALCYFP--VALIGY---------WMFGNKVEDN---ILLSLEKPTWLIVMANFFVVVHVIGSY 329 (331)
Q Consensus 278 ~~~~~~y~~--~~~~gy---------~~fg~~~~~~---il~~~~~~~~~~~~~~~~~~i~v~~sy 329 (331)
.+..++|++ .++.|- ...|++.++. ...+ .+..+...+..++..+++.+||
T Consensus 235 ~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~-~~~~~i~~~~~~Fa~~Ai~TSF 299 (415)
T PRK09664 235 LLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGT-KQHGIIEFCLLVFSNLAVASSF 299 (415)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhh-ccChHHHHHHHHHHHHHHHHHH
Confidence 888888864 344442 2334444431 1223 3456778888888888888775
No 13
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.82 E-value=2.1e-18 Score=157.94 Aligned_cols=271 Identities=13% Similarity=0.127 Sum_probs=185.5
Q ss_pred cHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCccccc
Q 020087 41 KWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGL 120 (331)
Q Consensus 41 s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~ 120 (331)
+.+.+.+.+.++.||+|+|++|.+....|+.++.+++++++.+..+++++++|+..+.++ ..++.+++++.+||++ +
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~--~~~~~~~a~~~LG~~g-~ 80 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPA--DTGLGTLAKRYLGRYG-Q 80 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CCCHHHHHHHHhChHH-H
Confidence 678999999999999999999999999999999999999999999999999997654443 3589999999999865 4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHH
Q 020087 121 YIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSY 200 (331)
Q Consensus 121 ~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~ 200 (331)
++..+...+..|..+.+|....++.+.+.++.+.+. +.+.....+++.++...... ...+...+.+.+-+...+..
T Consensus 81 ~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~---~i~~~~~~l~F~~~~~~iv~-~g~~~v~~~n~~L~~~~ii~ 156 (403)
T PRK15132 81 WLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI---SMSPTAGVLLFTLVAGGVVC-VGTSSVDLFNRFLFSAKIIF 156 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC---CCChHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998874421 12323333333333222222 23344444444433322222
Q ss_pred HHhhheeeeeecCCCccccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccchhHHHHHHHHH
Q 020087 201 STIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVV 280 (331)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~ 280 (331)
.+......+-+. +.+.-.+ . +.+...++.++|++++||+.|+++|++.+.+ ++.. ++.+|++..+..+.
T Consensus 157 ~~~~~~~l~p~~---~~~~L~~-~--~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~----~~~~-~~~~k~i~~Gs~i~ 225 (403)
T PRK15132 157 LVVMLALMMPHI---HKVNLLT-L--PLQQGLALSAIPVIFTSFGFHGSVPSIVSYM----GGNI-RKLRWVFIIGSAIP 225 (403)
T ss_pred HHHHHHHHHHhc---CHHHHhc-C--CccccHHHHHHHHHHHHhhCCcccHHHHHHh----CcCH-HHHHHHHHHHHHHH
Confidence 211111111111 1111100 0 1111248899999999999999999999998 4433 35779999999999
Q ss_pred HHHHHHHHHHHhhccCCCC----------chhhhhCC---CCChHHHHHHHHHHHHHhheee
Q 020087 281 ALCYFPVALIGYWMFGNKV----------EDNILLSL---EKPTWLIVMANFFVVVHVIGSY 329 (331)
Q Consensus 281 ~~~y~~~~~~gy~~fg~~~----------~~~il~~~---~~~~~~~~~~~~~~~i~v~~sy 329 (331)
.++|++.-..+...-+.+. -++++..+ .+..+...+..++..+++.+||
T Consensus 226 li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSF 287 (403)
T PRK15132 226 LVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSF 287 (403)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHH
Confidence 9999976555444433221 11222222 2456778888888888887775
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.74 E-value=2.4e-16 Score=144.02 Aligned_cols=278 Identities=11% Similarity=0.090 Sum_probs=179.1
Q ss_pred HHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCccccchhhHHH
Q 020087 47 FHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQ 126 (331)
Q Consensus 47 ~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~~~ 126 (331)
..+.++.||+|+|++|-.....|..++++.+++++..+++++..++|.....++ +..++.+++++.+||+++ .+..+.
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~-~~~~i~~v~~~~lG~~g~-~i~~il 103 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSN-PSGNITETVEEHFGKTGG-VVITFL 103 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CCCCHHHHHHHHcChhHH-HHHHHH
Confidence 788899999999999999999999999999999999999999999998764422 245899999999999766 999999
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHhhhe
Q 020087 127 QLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWS 206 (331)
Q Consensus 127 ~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~ 206 (331)
..+..|..+.+|.....+.+.+.+.+..+- ...++....+++.+++...... .-+.+-+++.+-+...+...+....
T Consensus 104 Yff~ly~ll~aY~~~itn~l~sfl~~ql~~--~~~~r~l~slifv~~l~~iv~~-G~~~v~kv~~~Lv~~~i~~l~~l~~ 180 (443)
T PRK13629 104 YFFAICPLLWIYGVTITNTFMTFWENQLGF--APLNRGFVALFLLLLMAFVIWF-GKDLMVKVMSYLVWPFIASLVLISL 180 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCc--CCccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888887765553321 0123344444443333333322 2233333333333322222121211
Q ss_pred eeeeecCCCcccc-cc---ccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCC---CCC--CccchhHHHHHH
Q 020087 207 ASVRKGVQPDVAY-GY---KAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPE---KPS--KGPMWRGVVVAY 277 (331)
Q Consensus 207 ~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~---~p~--~~~~~~~~~~~~ 277 (331)
..+-+...+.... +. +..........++.++|++++||+.|+.+|++...+|+..+ +++ ++|.+|++..+.
T Consensus 181 ~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs 260 (443)
T PRK13629 181 SLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRAS 260 (443)
T ss_pred HHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 1111111110000 00 00000112245889999999999999999999988543222 233 567889999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCC-------chh----hhhCCCC---C-----hHHHHHHHHHHHHHhheee
Q 020087 278 IVVALCYFPVALIGYWMFGNKV-------EDN----ILLSLEK---P-----TWLIVMANFFVVVHVIGSY 329 (331)
Q Consensus 278 ~~~~~~y~~~~~~gy~~fg~~~-------~~~----il~~~~~---~-----~~~~~~~~~~~~i~v~~sy 329 (331)
.+..++|+..-+.+...-+++. +.+ +.+.+++ . .+...+..++..+++..||
T Consensus 261 ~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSF 331 (443)
T PRK13629 261 MLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSF 331 (443)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHH
Confidence 9999999987776666655321 112 1122332 1 3466777777777777664
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.73 E-value=7.5e-16 Score=141.51 Aligned_cols=276 Identities=11% Similarity=0.065 Sum_probs=185.9
Q ss_pred HHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCccccchhhHH
Q 020087 46 AFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVP 125 (331)
Q Consensus 46 ~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~~ 125 (331)
.+.+.++++|+|+|.+|....+.||...++..+++..+++++...+.|.....+. ...++.|++++.|||+.| .+..+
T Consensus 9 ~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~-p~~~i~~~~~~~fGk~~G-~ii~~ 86 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKN-PCEDITEVVEEHFGKNWG-ILITL 86 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHcCHHHH-HHHHH
Confidence 4578899999999999999999999988898999999999999999998553332 134899999999999777 89999
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHhhh
Q 020087 126 QQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAW 205 (331)
Q Consensus 126 ~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~ 205 (331)
...+..+..+.+|....++.+.+.+......+. ..+....+..++++-.......+.+.+.+.+-+...+...+.+.
T Consensus 87 lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~---p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~ 163 (397)
T TIGR00814 87 LYFFAIYPILLIYSVAITNDSASFLVNQLGTAP---PLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLS 163 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998877542111 11212222222222333344677777777766654443333333
Q ss_pred eeeeeecCCCccccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCC--CccchhHHHHHHHHHHHH
Q 020087 206 SASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS--KGPMWRGVVVAYIVVALC 283 (331)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~--~~~~~~~~~~~~~~~~~~ 283 (331)
...+-+. +.+.-...+.....+.++..+++..++||.+|+++|+...+.|++.+||+ ++|.+|++..+..+..++
T Consensus 164 ~~lip~~---~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~ 240 (397)
T TIGR00814 164 LYLIPHW---NGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVAT 240 (397)
T ss_pred HHHHHHc---CHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 3222211 11111101111235678999999999999999999999833321114333 556789999999999999
Q ss_pred HHHHHHHHhhccCCCCch-------hhhh---CCCCChHHHHHHHHHHHHHhheee
Q 020087 284 YFPVALIGYWMFGNKVED-------NILL---SLEKPTWLIVMANFFVVVHVIGSY 329 (331)
Q Consensus 284 y~~~~~~gy~~fg~~~~~-------~il~---~~~~~~~~~~~~~~~~~i~v~~sy 329 (331)
|+..-+.+....+++.-. +.+. |-.+..+...+..++..+++..||
T Consensus 241 y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSF 296 (397)
T TIGR00814 241 VMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSF 296 (397)
T ss_pred HHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHH
Confidence 998877777776643211 1121 112334666667777677776654
No 16
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.68 E-value=8.6e-15 Score=137.50 Aligned_cols=243 Identities=12% Similarity=0.060 Sum_probs=158.2
Q ss_pred ccCCCcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhC
Q 020087 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFG 115 (331)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G 115 (331)
++|+.+.++.+...+++++|+|++.+|...++.|.. .+..+++.++........+.|...+.|..+ ...+.+++ +|
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~G--G~y~y~~~-~g 78 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQG--GPIAYAGE-IS 78 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ChhHHHHH-HC
Confidence 567899999999999999999999999999888763 677778888888888888999888787655 44455577 79
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHH-HHHHHHHhcCCCCchhHHHHHHHHH
Q 020087 116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMI-FASVHFVLSHLPNFNAIAGVSLAAA 194 (331)
Q Consensus 116 ~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v-~~~~~~pl~~~~~~~~l~~~s~~~~ 194 (331)
+++| +...+..++.......++.+...+++..+++... ... ..+... ..+.++-+...+..+....++.+..
T Consensus 79 ~~~g-f~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~----~~~--~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~ 151 (435)
T PRK10435 79 PAFG-FQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLN----DPI--PAGIACIAIVWVFTFVNMLGGTWVSRLTTIGL 151 (435)
T ss_pred cHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC----ChH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9888 8887776655544455555556667766554321 001 111111 1111122222334444444444444
Q ss_pred HHHHHHHHhhheeeeeecCCCccccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccchhHHH
Q 020087 195 VMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV 274 (331)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~ 274 (331)
...+..++.+++.............++. ...+.++.++..++....|+|.|.+.+....+|+ |||+| +++|++.
T Consensus 152 ~~~li~~~~~~i~g~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~----knP~r-~iPrAi~ 225 (435)
T PRK10435 152 VLVLIPVVGTAIVGWHWFDAATYAANWN-TSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMV----KNPKR-TVPLATM 225 (435)
T ss_pred HHHHHHHHHHHHHHHHHcCHHhhccccc-CCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHh----hCccc-cccHHHH
Confidence 3322222211111111111111001111 1122456789999999999999999999999999 99977 6999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 020087 275 VAYIVVALCYFPVALIGYWMF 295 (331)
Q Consensus 275 ~~~~~~~~~y~~~~~~gy~~f 295 (331)
.+..++.++|++..+......
T Consensus 226 ~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 226 LGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999887655444
No 17
>PRK10655 potE putrescine transporter; Provisional
Probab=99.67 E-value=6.7e-15 Score=138.48 Aligned_cols=242 Identities=9% Similarity=0.010 Sum_probs=157.7
Q ss_pred ccCCCcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhC
Q 020087 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFG 115 (331)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G 115 (331)
++|+.+.++.+...+++++|+|++.+|..+.+.|. .+++.+++.+++.......+.|...+.|..+ .....+++.+|
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~G--G~y~y~~~~~G 80 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSG--GMGGYAEYAFG 80 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC--chHHHHHHHcC
Confidence 46789999999999999999999999998888876 5788888889998989999999877666554 45556689999
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHH-HHHHhcCCCCchhHHHHHHHHH
Q 020087 116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFAS-VHFVLSHLPNFNAIAGVSLAAA 194 (331)
Q Consensus 116 ~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~-~~~pl~~~~~~~~l~~~s~~~~ 194 (331)
|+.| ++..+..++.......++.....+++..+++... . ....+.+...+ .++-....+..+....++.+..
T Consensus 81 ~~~g-f~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~----~--~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~ 153 (438)
T PRK10655 81 KSGN-FMANYTYGVSLLIANVAIAISAVGYGTELFGATL----S--PVQICLATIGVLWLCTVANFGGARITGQISSVTV 153 (438)
T ss_pred cchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----c--hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 9888 8888877666655555555555566655543210 0 11122221111 1112222334555555554444
Q ss_pred HHHHHHHHhhheeeeeecCCCccccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccchhHHH
Q 020087 195 VMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV 274 (331)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~ 274 (331)
...+..++++.+.........+.+..+. ......+.++..++....|+|.|.+.+..+.+|+ |||+| +++|++.
T Consensus 154 ~~~l~~l~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r-~iPrAi~ 227 (438)
T PRK10655 154 WGVIIPVVGLSIIGWFWFSPSLYVAAWN-PHHLPFFSAVGSSIAMTLWAFLGLESACANSDAV----ENPER-NVPIAVL 227 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCcC-ccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHh----hCccc-cccHHHH
Confidence 3332222222211111111111111111 1111234677888899999999999999999999 99987 7999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 020087 275 VAYIVVALCYFPVALIGYW 293 (331)
Q Consensus 275 ~~~~~~~~~y~~~~~~gy~ 293 (331)
.+..++.++|++.......
T Consensus 228 ~~~~~~~~~Y~l~~~~~~~ 246 (438)
T PRK10655 228 GGTLGAAVIYIVSTNVIAG 246 (438)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999987655443
No 18
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.64 E-value=4.7e-14 Score=135.83 Aligned_cols=248 Identities=13% Similarity=0.109 Sum_probs=169.1
Q ss_pred cccCCCcHHHHHHHHHhhhhhhhhchHHHHHH--hhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcc-cccHHHHHH
Q 020087 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMA--QLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKR-FDRYHELGQ 111 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~--~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~-~~~y~~l~~ 111 (331)
+.+|+.+.++.+...++.++|+|++.+|.... .+|.. .++.+++.++.+...+..+.|...+.|..+ .+.|. +
T Consensus 25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~---~ 100 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYS---Y 100 (557)
T ss_pred chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeH---H
Confidence 46788999999999999999999999997543 46653 667778888888999999999888777654 34444 7
Q ss_pred HHhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCC-------C-CCc-cchhHHHHHHHHHHHhcCCCC
Q 020087 112 HAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEP-------C-KEI-KLSYFIMIFASVHFVLSHLPN 182 (331)
Q Consensus 112 ~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~-------~-~~~-~~~~~~~v~~~~~~pl~~~~~ 182 (331)
+.+|+.++ +++.+..++.......+.....++++.+++....+.. . ... .......+..++++-....+.
T Consensus 101 ~~~G~~~g-fi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~G 179 (557)
T TIGR00906 101 VTVGELWA-FITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFG 179 (557)
T ss_pred HHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhc
Confidence 88999888 8898888877776677777777888887775421100 0 000 011112222222222334457
Q ss_pred chhHHHHHHHHHHHHHHHHHhhheeeeeecCCCcccccc---ccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCC
Q 020087 183 FNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGY---KAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPS 259 (331)
Q Consensus 183 ~~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~ 259 (331)
.+..++++.+.....+..++++++.........+..... .....+.++.++..+.....|+|.|.+.+.+..+|+
T Consensus 180 ik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~-- 257 (557)
T TIGR00906 180 VKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEV-- 257 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhc--
Confidence 777777777766655544443333333222111111000 001123356788999999999999999999999999
Q ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 020087 260 TPEKPSKGPMWRGVVVAYIVVALCYFPVALIGY 292 (331)
Q Consensus 260 ~~~~p~~~~~~~~~~~~~~~~~~~y~~~~~~gy 292 (331)
|||+| +++|++..++.+++++|+++.+.-.
T Consensus 258 --knP~r-~iP~aii~sl~i~~vlY~lv~~~l~ 287 (557)
T TIGR00906 258 --KNPQR-AIPIGIVTSLLVCFVAYFLMSAALT 287 (557)
T ss_pred --cCccc-cccHHHHHHHHHHHHHHHHHHHHHh
Confidence 99987 7999999999999999998876543
No 19
>PRK10249 phenylalanine transporter; Provisional
Probab=99.61 E-value=3.2e-14 Score=134.42 Aligned_cols=240 Identities=13% Similarity=0.066 Sum_probs=156.9
Q ss_pred cccCCCcHHHHHHHHHhhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHH
Q 020087 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~ 113 (331)
+.+|+.+.++..+..++.++|+|++..|.. .+++|. ..++.+++.+++....+..+.|...+.|..+ +..+.+++.
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~G--g~~~y~~~~ 94 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVSG--SFAHFAYKY 94 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Confidence 456789999999999999999999998866 555565 5888889999999999999999998888766 677788999
Q ss_pred hCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 020087 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (331)
Q Consensus 114 ~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~ 193 (331)
+|+.+| ++..+..++.......+.....+.+++.+.+. .....+.++...+ +-..-.++.+..+++....
T Consensus 95 ~g~~~g-f~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~l-~~~lN~~gv~~~~~i~~~~ 164 (458)
T PRK10249 95 WGPFAG-FLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD--------VPTWIWAAAFFII-INAVNLVNVRLYGETEFWF 164 (458)
T ss_pred hChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--------CcHHHHHHHHHHH-HHHHHHhcchhhhhHHHHH
Confidence 999888 88888877766555555555555555443321 1112222222222 2222233444444443333
Q ss_pred HHHHH---HHHHhhheeeeeecC-CC--cccccccc-ccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCC
Q 020087 194 AVMSL---SYSTIAWSASVRKGV-QP--DVAYGYKA-KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSK 266 (331)
Q Consensus 194 ~~~~~---~~~~~~~~~~~~~~~-~~--~~~~~~~~-~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~ 266 (331)
....+ ..++++.+.....+. .+ +.+..++. ...+.++.++..++....|+|.|.+.+....+|+ |||+|
T Consensus 165 ~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----~~P~k 240 (458)
T PRK10249 165 ALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEA----RDPEK 240 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHh----cCHhh
Confidence 22111 111111111101111 01 11111111 1123567788999999999999999999999999 99987
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHh
Q 020087 267 GPMWRGVVVAYIVVALCYFPVALIGY 292 (331)
Q Consensus 267 ~~~~~~~~~~~~~~~~~y~~~~~~gy 292 (331)
+++|++..+.....++|+.......
T Consensus 241 -~iPrai~~~~~~~~~~y~~~~~~~~ 265 (458)
T PRK10249 241 -SIPKAVNQVVYRILLFYIGSLVVLL 265 (458)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999999987554443
No 20
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.61 E-value=7.4e-14 Score=131.65 Aligned_cols=244 Identities=16% Similarity=0.126 Sum_probs=154.7
Q ss_pred cccCCCcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHh
Q 020087 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~ 114 (331)
+.+|+.+.++.+...++.++|+|++.+|..+.+.|. ..+..+++.++........+.|.....|..+ .....+++.+
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~aG--G~y~~~~~~~ 81 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSPG--GSYAYARRCF 81 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ChhHHHHHHc
Confidence 356789999999999999999999999998888764 3556677777777788888888887777654 3444469999
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHH--HHHhcCCCCchhHHHHHHH
Q 020087 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASV--HFVLSHLPNFNAIAGVSLA 192 (331)
Q Consensus 115 G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~--~~pl~~~~~~~~l~~~s~~ 192 (331)
||..| ++..+..++.......+......++...+.+... +.....++..++ ++-..-.+..+...+++.+
T Consensus 82 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i 153 (445)
T PRK10644 82 GPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-------DPLVLTITCVVVLWIFVLLNIVGPKMITRVQAV 153 (445)
T ss_pred CchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-------CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 99888 7777776665544444444444455544433211 111111111111 1222223345555555555
Q ss_pred HHHHHHHHHHhhheeeeeecCCCccccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccchhH
Q 020087 193 AAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRG 272 (331)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~ 272 (331)
.....+..++.+....+.....+.....++ ......+..+..++....|+|.|.+......+|+ |||+| +++|+
T Consensus 154 ~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r-~iPra 227 (445)
T PRK10644 154 ATVLALIPIVGIAVFGWFWFRGETYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPIA 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhccCCcc-ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHh----hCccc-chhHH
Confidence 544333222222111111110000001111 1112345677788889999999999999999999 99987 69999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 020087 273 VVVAYIVVALCYFPVALIGYWMF 295 (331)
Q Consensus 273 ~~~~~~~~~~~y~~~~~~gy~~f 295 (331)
+..+..+++++|++..+.....-
T Consensus 228 i~~s~~i~~v~Y~l~~~~~~~~~ 250 (445)
T PRK10644 228 TIGGVLIAAVCYVLSSTAIMGMI 250 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999998877644333
No 21
>TIGR00909 2A0306 amino acid transporter.
Probab=99.61 E-value=1.5e-13 Score=129.00 Aligned_cols=244 Identities=14% Similarity=0.117 Sum_probs=167.1
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCc
Q 020087 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGE 116 (331)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~ 116 (331)
+|+.|.++.+...+++++|+|++.+|......+-...++.+++.++........+.|...+.|+.+ ...+..++.+||
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~G~ 79 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPVAG--SPYTYAYEAMGE 79 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--cceeeHHHHhCc
Confidence 578999999999999999999999997755443334667777788888888888999887777643 344555889999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCc-----cchh--HHHHHHHHHHHhcCCCCchhHHHH
Q 020087 117 KLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEI-----KLSY--FIMIFASVHFVLSHLPNFNAIAGV 189 (331)
Q Consensus 117 ~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~-----~~~~--~~~v~~~~~~pl~~~~~~~~l~~~ 189 (331)
+.| ++..+..++.....+..+....++++..+++....+...+. +... ...+..++++-....+..+...++
T Consensus 80 ~~g-~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~ 158 (429)
T TIGR00909 80 LTA-FIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKV 158 (429)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 888 88888888877777888888888888887764211000000 0001 111222223333344567777777
Q ss_pred HHHHHHHHHHHHHhhheeeeeecCCCccccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccc
Q 020087 190 SLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPM 269 (331)
Q Consensus 190 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~ 269 (331)
+.+.....+..++++++....+...++ ..+ ..+.++.++..++....|+|.|.+......+|+ |||+| +.
T Consensus 159 ~~v~~~~~i~~l~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~----~~p~r-~i 228 (429)
T TIGR00909 159 NDILVVLKVAALLLFAALGAIHFASNN----YTP-FMPMGFGGVGAATALVFFAFIGFEAISTAAEEV----KNPER-DI 228 (429)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhCcHHh----cCC-CCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhc----cCccc-cc
Confidence 777666555444333332222211111 111 112356678899999999999999999999999 99976 68
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 020087 270 WRGVVVAYIVVALCYFPVALIGYW 293 (331)
Q Consensus 270 ~~~~~~~~~~~~~~y~~~~~~gy~ 293 (331)
+|++..+..++.++|++.......
T Consensus 229 p~ai~~~~~~~~v~Yil~~~~~~~ 252 (429)
T TIGR00909 229 PKAIILSLIVVTLLYVLVAAVILG 252 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999988765543
No 22
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.61 E-value=1.1e-13 Score=131.52 Aligned_cols=247 Identities=11% Similarity=0.064 Sum_probs=161.4
Q ss_pred ccCCCcHHHHHHHHHhhhhhhhhchHHHHHHhhChh-HHHHHHHHHHHHHHHHHHHHHHhhhhcCC-cccccHHHHHHHH
Q 020087 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWG-PGVAILILSWIITLYTLWQMVEMHEMVPG-KRFDRYHELGQHA 113 (331)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~-~g~i~~i~~~~~~~~t~~~l~~~~~~~~~-~~~~~y~~l~~~~ 113 (331)
++|+.|.++.+.+.+++++|+|++.+|....+.|-. ..++.+++.++........+.|...+.|+ .+ ...+..++.
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sG--G~y~y~~~~ 82 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDG--GIYAYAREG 82 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--ChhhhHHhH
Confidence 467899999999999999999999999987765533 34567788888888888889998877777 44 344455999
Q ss_pred hCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHH-HHHHHhcCCCCchhHHHHHHH
Q 020087 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFA-SVHFVLSHLPNFNAIAGVSLA 192 (331)
Q Consensus 114 ~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~-~~~~pl~~~~~~~~l~~~s~~ 192 (331)
+||+.| ++..+..++.......++.....+++..+++....+ . ....+..... ++++-....+..+...+++.+
T Consensus 83 ~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~--~--~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~ 157 (473)
T TIGR00905 83 FGPYIG-FMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSG--N--PVPSILGASVLLWVFTFLVLRGVRQAAFINTI 157 (473)
T ss_pred cccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC--C--cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 999888 888887776666666666666667777766632211 0 1111211111 112223344566666666666
Q ss_pred HHHHHHHHHHhhheeeeeecCCCcccccc-cc-c-cccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccc
Q 020087 193 AAVMSLSYSTIAWSASVRKGVQPDVAYGY-KA-K-TAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPM 269 (331)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~-~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~ 269 (331)
.....+..++++++..+.....+...... +. . .....+..+..++....|+|.|.+......+|+ || + |++
T Consensus 158 ~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~-~-r~i 231 (473)
T TIGR00905 158 TTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRA----KN-K-SDV 231 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHH----hc-c-ccc
Confidence 55543332222221111111111110011 00 0 112356678888999999999999999999999 88 4 479
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcc
Q 020087 270 WRGVVVAYIVVALCYFPVALIGYWMF 295 (331)
Q Consensus 270 ~~~~~~~~~~~~~~y~~~~~~gy~~f 295 (331)
+|++..+..++.++|++.........
T Consensus 232 Prai~~~~~i~~~~Yil~~~~~~~~~ 257 (473)
T TIGR00905 232 GKATVLGTLGALVIYILITLLSLGVL 257 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999998876644433
No 23
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.61 E-value=1.5e-13 Score=130.49 Aligned_cols=243 Identities=11% Similarity=0.108 Sum_probs=151.6
Q ss_pred ccCCCcHHHHHHHHHhhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHh
Q 020087 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (331)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~ 114 (331)
.+|+.+.++.....++.++|+|++..|.. .+.+|-...++.+++.+++.......+.|...+.|..+ .+...+++.+
T Consensus 12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aG--G~y~y~~~~~ 89 (471)
T PRK11387 12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETG--AFHVYAARYL 89 (471)
T ss_pred hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHhc
Confidence 56789999999999999999999988866 56667544577888899999999999999988888765 6667789999
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 020087 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (331)
Q Consensus 115 G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~ 194 (331)
|++.| ++..+..++.....+.......+.++..+.+. .....+.++..++ +-+...+..+.....+....
T Consensus 90 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~--------~~~~~~~~~~~~~-~~~in~~gvk~~~~~~~~~~ 159 (471)
T PRK11387 90 GPATG-YTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQ--------VPVWPWCLLFCAL-IFGLNVVSTRFFAEGEFWFS 159 (471)
T ss_pred ChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--------CcHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHH
Confidence 99888 88888777765555444444443333222111 1112222222222 12222234444433332222
Q ss_pred HHHHHHHHhhhee---ee---eecCCCccccccc---cc-cccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCC
Q 020087 195 VMSLSYSTIAWSA---SV---RKGVQPDVAYGYK---AK-TAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKP 264 (331)
Q Consensus 195 ~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~---~~-~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p 264 (331)
...+..++.+++. .. ......+..+..+ .. ..+.+..++..++....|+|.|.+.+....+|+ |||
T Consensus 160 ~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~----knP 235 (471)
T PRK11387 160 LIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGET----ENP 235 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHh----cCh
Confidence 2111111111110 00 0000000000000 00 012234567888888999999999999999999 999
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 020087 265 SKGPMWRGVVVAYIVVALCYFPVALIGYWMF 295 (331)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~y~~~~~~gy~~f 295 (331)
+| +++|++..+..++.++|+...+......
T Consensus 236 ~r-~iPrAi~~~~~~~~~~y~~~~~~~~~~~ 265 (471)
T PRK11387 236 AK-VIPVAIRTTIARLVIFFVGTVLVLAALI 265 (471)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 77 7999999999999999998876544433
No 24
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.60 E-value=8.5e-14 Score=131.51 Aligned_cols=241 Identities=14% Similarity=0.125 Sum_probs=159.2
Q ss_pred cccCCCcHHHHHHHHHhhhhhhhhchHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHH
Q 020087 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLP-YAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP-~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~ 113 (331)
+.+|+.+.++...+.++.+||+|++..| .+++++|. .+++.+++.+++....+..+.|...+.|..+ ...+.+++.
T Consensus 9 ~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~G--g~~~~~~~~ 85 (452)
T TIGR01773 9 KLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPDTG--SFSTYADDA 85 (452)
T ss_pred hHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Confidence 4678999999999999999999999999 55777775 5788889999999999999999988777765 677788999
Q ss_pred hCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHH-HHHhcCCCCchhHHHHHHH
Q 020087 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASV-HFVLSHLPNFNAIAGVSLA 192 (331)
Q Consensus 114 ~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~-~~pl~~~~~~~~l~~~s~~ 192 (331)
+||..| ++..+..++.....+.+.....+.+++.+++. . ..|.....++ +.-..-.+..+..++++..
T Consensus 86 ~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~--~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~ 154 (452)
T TIGR01773 86 IGRWAG-FTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD--------I--PLWLFSLILTIVLTLTNLYSVKSYGEFEFW 154 (452)
T ss_pred hCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------C--cHHHHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 999888 88888888777766666666666666554321 1 2222221111 1111122233333333333
Q ss_pred HHHHHHHHH---HhhheeeeeecCCC-cc---ccccc-cccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCC
Q 020087 193 AAVMSLSYS---TIAWSASVRKGVQP-DV---AYGYK-AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKP 264 (331)
Q Consensus 193 ~~~~~~~~~---~~~~~~~~~~~~~~-~~---~~~~~-~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p 264 (331)
.....+..+ +++........... +. +...+ ....+.++.++..++....|+|.|.+......+|+ |||
T Consensus 155 ~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~----k~P 230 (452)
T TIGR01773 155 FALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAES----SNP 230 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhh----cCh
Confidence 322221111 11111000011000 00 00000 00113456689999999999999999999999999 999
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 020087 265 SKGPMWRGVVVAYIVVALCYFPVALIGYWM 294 (331)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~y~~~~~~gy~~ 294 (331)
+| +++|++..+.....++|++........
T Consensus 231 ~r-~iPrAi~~~~~~~~~~y~l~~~~~~~~ 259 (452)
T TIGR01773 231 IK-SITRATNSVIWRIIVFYLGSIFIVVAL 259 (452)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHeeE
Confidence 87 699999988999999999865544433
No 25
>PRK15049 L-asparagine permease; Provisional
Probab=99.60 E-value=1.4e-13 Score=131.11 Aligned_cols=242 Identities=12% Similarity=0.123 Sum_probs=149.5
Q ss_pred ccCCCcHHHHHHHHHhhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHh
Q 020087 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (331)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~ 114 (331)
.+|+.+.++..++.++.+||+|++..|.. +..+|- .+++.+++++++....+..+.|.....|..+ .....+++.+
T Consensus 26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~aG--g~y~y~~~~~ 102 (499)
T PRK15049 26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPSSG--SFVSYAREFL 102 (499)
T ss_pred hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHh
Confidence 56789999999999999999999988874 666665 5788889999999999999999988888765 6777779999
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHH-HHHhcCCCCchhHHHHHHHH
Q 020087 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASV-HFVLSHLPNFNAIAGVSLAA 193 (331)
Q Consensus 115 G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~-~~pl~~~~~~~~l~~~s~~~ 193 (331)
|++.| +++.+..++.............+.++... +.+. +...|.....++ ++-..-.+..+....+....
T Consensus 103 G~~~g-f~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~~-------~~~~~~~~~~~~~l~~~iN~~gvk~~~~i~~~~ 173 (499)
T PRK15049 103 GEKAA-YVAGWMYFINWAMTGIVDITAVALYMHYW-GAFG-------GVPQWVFALAALTIVGTMNMIGVKWFAEMEFWF 173 (499)
T ss_pred CcHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888 88888777654433333333333333211 1110 112232221111 11112222333333333332
Q ss_pred HHHHHHHHHh---hheeeeeecCCCc-ccccc----c-cccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCC
Q 020087 194 AVMSLSYSTI---AWSASVRKGVQPD-VAYGY----K-AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKP 264 (331)
Q Consensus 194 ~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~----~-~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p 264 (331)
....+..++. +.+.....+...+ ...+. + ....+.++.++..++....|+|.|.+.+....+|+ |||
T Consensus 174 ~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~----knP 249 (499)
T PRK15049 174 ALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGEC----KDP 249 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHh----cCh
Confidence 2211111111 1111111111100 00000 0 01112355666777788999999999999999999 999
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 020087 265 SKGPMWRGVVVAYIVVALCYFPVALIGYWM 294 (331)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~y~~~~~~gy~~ 294 (331)
+| +++|++..++..+.++|+.........
T Consensus 250 ~r-~iPrAi~~~~~~i~~~yi~~~~~~~~~ 278 (499)
T PRK15049 250 QT-MVPKAINSVIWRIGLFYVGSVVLLVML 278 (499)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 87 799999999999999999866544333
No 26
>PRK11021 putative transporter; Provisional
Probab=99.59 E-value=2.3e-13 Score=127.03 Aligned_cols=231 Identities=14% Similarity=0.192 Sum_probs=149.6
Q ss_pred CcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCcccc
Q 020087 40 AKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLG 119 (331)
Q Consensus 40 ~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g 119 (331)
.++++++.+.+++++|+|++.+|....+.+-...++.+++.+++.......+.|...+.|+.+ .....+++.+||++|
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aG--G~y~y~~~~~G~~~g 78 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAG--GPAHFVGMAFGPRLG 78 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHhHHHHhCchhH
Confidence 368999999999999999999997755443346788889999999999999999988888765 566677999999888
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHH
Q 020087 120 LYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLS 199 (331)
Q Consensus 120 ~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~ 199 (331)
++..+..++.......+......+++..+++. + . +.. ....+...+++-+...+..+...+++.+..+..+.
T Consensus 79 -f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~-~~~-~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~ 150 (410)
T PRK11021 79 -RVTGWLFLSVIPVGLPAALQIAAGFGQALFGW---S--S-WQL-LLAELLTLALLWLLNLRGASSSANLQTVIALLIVA 150 (410)
T ss_pred -HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC---C--C-chH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 77777666543333333333334444443321 0 1 111 11111222222233334555555555443332222
Q ss_pred HHHhhheeeeeecCCCccccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccchhHHHHHHHH
Q 020087 200 YSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIV 279 (331)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~ 279 (331)
.+.... ..+.....+...+ ...+.++.++..++....|+|.|.+.+....+|+ |||+| +++|++..+..+
T Consensus 151 i~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~k-~iPrAi~~~~~~ 220 (410)
T PRK11021 151 LVVAIW----WAGDIKPADIPFP-APGSIEWSGLFAALGVMFWCFVGIEAFAHLASEF----KNPER-DFPRALMIGLLL 220 (410)
T ss_pred HHHHHH----HHcCCchhcCCCC-CCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhc----cCccc-cccHHHHHHHHH
Confidence 111111 1111111111111 1123467889999999999999999999999999 99987 699999999999
Q ss_pred HHHHHHHHHHH
Q 020087 280 VALCYFPVALI 290 (331)
Q Consensus 280 ~~~~y~~~~~~ 290 (331)
+.++|++..+.
T Consensus 221 ~~~lYil~~~~ 231 (410)
T PRK11021 221 AGLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 27
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.58 E-value=1.4e-13 Score=138.70 Aligned_cols=247 Identities=14% Similarity=0.139 Sum_probs=164.9
Q ss_pred cccCCCcHHHHHHHH-Hhhhhhhhhc-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCcccccHHHHHH
Q 020087 35 TSSRNAKWWYSAFHN-VTAMVGAGVL-SLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEM-VPGKRFDRYHELGQ 111 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l-~~~~iG~GiL-~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~-~~~~~~~~y~~l~~ 111 (331)
.+.++.|++++++.- +.+++|+|++ .+++...++|...+++.+++.++++..+...+.+.+.. .++.+ .-..+.+
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aG--G~Y~yis 150 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGG--GAYYLIS 150 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc--HHHHHHH
Confidence 345688999999999 9999999988 55577889998888999999999999999999998774 43322 2333448
Q ss_pred HHhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcC--CCCCccchhHHHHHHHHHHHhcCCCCchhHHHH
Q 020087 112 HAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKE--PCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGV 189 (331)
Q Consensus 112 ~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~--~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~ 189 (331)
+.+|+..| +.+.+..++.+...+..|.+.+++++..+++..... .....+...+.++..+++. +......+...++
T Consensus 151 ralGp~~G-f~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~-~In~~Gvk~~ak~ 228 (953)
T TIGR00930 151 RSLGPEFG-GSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLL-GISFAGMEWENKA 228 (953)
T ss_pred HHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHH-HHHHhhHHHHHHH
Confidence 89999888 888888888888888999999999998887642110 0000111222222222222 2223355555555
Q ss_pred HHHHHHHHHHHHHhhheeeeeecCCCccccc--------cc-c-cc-ccchHhHHHHHHHHHHhHhccccchhhhhhhCC
Q 020087 190 SLAAAVMSLSYSTIAWSASVRKGVQPDVAYG--------YK-A-KT-AAGTVFNFFSALGDVAFAYAGHNVVLEIQATIP 258 (331)
Q Consensus 190 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~-~~-~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~ 258 (331)
+.+.+++.++.++.+++..+.... .....+ .. + .+ ......+++..++++++||.|......+..|+
T Consensus 229 q~vl~vi~ll~ll~~iig~~~~~~-~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgEl- 306 (953)
T TIGR00930 229 QVLFLVIVLLSILNIFVGTIIPAF-DKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDL- 306 (953)
T ss_pred HHHHHHHHHHHHHHHHheeeecCC-CCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 555444433333333332222110 000000 00 0 00 11122347888999999999999999999999
Q ss_pred CCCCCCCCccchhHHHHHHHHHHHHHHHHHHHH
Q 020087 259 STPEKPSKGPMWRGVVVAYIVVALCYFPVALIG 291 (331)
Q Consensus 259 ~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~~~g 291 (331)
|||+| .++|++..++.+++++|+++.+..
T Consensus 307 ---KnP~r-~IPratl~ai~i~~vlYllv~~~~ 335 (953)
T TIGR00930 307 ---KDPQK-AIPKGTLLAILTTTVVYLGSVVLF 335 (953)
T ss_pred ---cChhh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987 799999999999999999987643
No 28
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.58 E-value=1.4e-13 Score=130.42 Aligned_cols=241 Identities=12% Similarity=0.089 Sum_probs=152.8
Q ss_pred ccccCCCcHHHHHHHHHhhhhhhhhchHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHH
Q 020087 34 ITSSRNAKWWYSAFHNVTAMVGAGVLSLPY-AMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQH 112 (331)
Q Consensus 34 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~ 112 (331)
.+.+|+.+.++.....++.+||+|++..|. +++++|. ..+..+++++++.......+.|.....+.. .++.+.+++
T Consensus 16 ~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~--~~~~~ya~~ 92 (469)
T PRK11049 16 QSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLEY--KSFSDFASD 92 (469)
T ss_pred hhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcHHHHHHH
Confidence 357889999999999999999999998875 5777777 467777788888888888888876543432 256778899
Q ss_pred HhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 020087 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA 192 (331)
Q Consensus 113 ~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~ 192 (331)
.+||..| ++..+..++.......+.....+.++..+++. .....+.++...++ ...-.+..+....++.+
T Consensus 93 ~~g~~~g-f~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~--------~~~~~~~~~~~~~~-~~iN~~g~~~~~~i~~~ 162 (469)
T PRK11049 93 LLGPWAG-YFTGWTYWFCWVVTGIADVVAITAYAQFWFPD--------LSDWVASLAVVLLL-LSLNLATVKMFGEMEFW 162 (469)
T ss_pred HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CcHHHHHHHHHHHH-HHHHHHhHHHHHHHHHH
Confidence 9999888 88888888766555555555555555443321 11122222211111 11222344444444444
Q ss_pred HHHHHHHHHHhhheeeee---ec-CCCc-----ccccccc-ccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCC
Q 020087 193 AAVMSLSYSTIAWSASVR---KG-VQPD-----VAYGYKA-KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPE 262 (331)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~---~~-~~~~-----~~~~~~~-~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~ 262 (331)
.....+..++.+++..+. .+ ..+. .+..++. ...+.++.++..++....|+|.|.+.+....+|+ |
T Consensus 163 ~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----k 238 (469)
T PRK11049 163 FAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAET----K 238 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHh----c
Confidence 333222222221111110 00 0010 1000111 1113456778999999999999999999999999 9
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 020087 263 KPSKGPMWRGVVVAYIVVALCYFPVALIGY 292 (331)
Q Consensus 263 ~p~~~~~~~~~~~~~~~~~~~y~~~~~~gy 292 (331)
||+| +++|++..+...+.++|++......
T Consensus 239 nP~r-~iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 239 DPEK-SLPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred CHhh-HHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 9977 7999998778788888887665443
No 29
>PRK10836 lysine transporter; Provisional
Probab=99.57 E-value=8e-13 Score=126.01 Aligned_cols=244 Identities=15% Similarity=0.166 Sum_probs=147.5
Q ss_pred cccCCCcHHHHHHHHHhhhhhhhhchHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHH
Q 020087 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPY-AMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~ 113 (331)
+.+|+.+.++.....++.+||+|++..|. +.+++|....++.+++++++....+..+.|...+.|..+ .....+++.
T Consensus 12 ~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sG--g~y~y~~~~ 89 (489)
T PRK10836 12 GLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSG--SFATYGQNY 89 (489)
T ss_pred cccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Confidence 46788999999999999999999999996 466777644688889999999999999999998888766 666677899
Q ss_pred hCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHH-
Q 020087 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA- 192 (331)
Q Consensus 114 ~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~- 192 (331)
+|+.+| ++..+..++..... .+.....+.. ++....++ .....+..+..+++. ....+..+..+..+.+
T Consensus 90 ~g~~~g-f~~Gw~~~~~~~~~-~a~~~~a~~~---~~~~~~~~----~~~~~~~~~~~~~~~-~lN~~gv~~~~~~~~~~ 159 (489)
T PRK10836 90 VEEGFG-FALGWNYWYNWAVT-IAVDLVAAQL---VMSWWFPD----TPGWIWSALFLGVIF-LLNYISVRGFGEAEYWF 159 (489)
T ss_pred cChHHH-HHHHHHHHHHHHHH-HHHHHHHHHH---HhhhcCCC----CchHHHHHHHHHHHH-HHHHHcchhhhhhHHHH
Confidence 999888 77777666543332 2222222221 11111111 111122222222111 1112233332222222
Q ss_pred --HHHHHHHHHH---hhheeeeeecCC-Cccc-cccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCC
Q 020087 193 --AAVMSLSYST---IAWSASVRKGVQ-PDVA-YGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS 265 (331)
Q Consensus 193 --~~~~~~~~~~---~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~ 265 (331)
..+..+..++ ++......+... .+.+ ......+...++.++..+.....|+|.|.+.+....+|+ |||+
T Consensus 160 ~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~----knP~ 235 (489)
T PRK10836 160 SLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGES----EDPA 235 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHh----cCHH
Confidence 1111111111 111111111110 0000 000011112355667777777789999999999999999 9997
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 020087 266 KGPMWRGVVVAYIVVALCYFPVALIGYWMF 295 (331)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~y~~~~~~gy~~f 295 (331)
| +++|++..++..+.++|++.........
T Consensus 236 r-~iPrAi~~~~~~v~~~Yvl~~~~~~~~v 264 (489)
T PRK10836 236 K-NIPRAVRQVFWRILLFYVFAILIISLII 264 (489)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 7 7999999999999999998865544443
No 30
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.56 E-value=3.9e-14 Score=129.75 Aligned_cols=242 Identities=16% Similarity=0.175 Sum_probs=156.2
Q ss_pred cccCCCcHHHHHHHHHhhhhhhhhchHHHHHH-hhCh-hHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHH
Q 020087 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMA-QLGW-GPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQH 112 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~-~~G~-~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~ 112 (331)
..+|+.+.+.++.+++++++|+|++..|.... ++|- ..+++.+++.++++...+.+.+|.....|+.+ -+|.- ..+
T Consensus 9 ~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksG-gd~ay-i~~ 86 (479)
T KOG1287|consen 9 QLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSG-GDYAY-ISE 86 (479)
T ss_pred cccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCC-cchhh-HHH
Confidence 35788999999999999999999999998754 4433 45777888899999999999999887766544 13333 388
Q ss_pred HhCccccchhhHHHHHHHHH-HHHHHHHHHhccc-hHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHH
Q 020087 113 AFGEKLGLYIVVPQQLIVEV-GVCIVYMVTGGKS-LHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVS 190 (331)
Q Consensus 113 ~~G~~~g~~~~~~~~~i~~~-g~~~~y~i~~~~~-l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s 190 (331)
+||+.++ +...+.-.+... ..+..+.+.+++| +...++ .|.. .+...-.+.++++.. ...+|...+++..
T Consensus 87 afg~~~a-F~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-----~c~~-p~~~~~lla~~~l~~-lt~~n~~~V~~a~ 158 (479)
T KOG1287|consen 87 AFGPFPA-FLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-----LCDV-PRVASKLLAAALLVL-LTLINSFSVKWAT 158 (479)
T ss_pred Hhccchh-HHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-----CCCC-chHHHHHHHHHHHHH-HHHHhhhhhhHHH
Confidence 8999777 444444444333 3446677888887 444444 1332 212222222222222 2222333344444
Q ss_pred HHHHH---HHHHHHHhhhe---eeeeecCCCccccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCC
Q 020087 191 LAAAV---MSLSYSTIAWS---ASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKP 264 (331)
Q Consensus 191 ~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p 264 (331)
.+..+ +-+..+.++++ .....+...+.+... ......+..++..++-...|+|.|+...-.+.+|+ |||
T Consensus 159 ~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~-f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEi----knP 233 (479)
T KOG1287|consen 159 RVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSE-FEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEI----KNP 233 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHhchheeEecccccccccc-cccCcCchHHHHHHHHHhhhcccCchhhccchHhh----cCc
Confidence 33333 22222222222 222333333222221 11223455678899999999999999999999999 999
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHh
Q 020087 265 SKGPMWRGVVVAYIVVALCYFPVALIGY 292 (331)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~y~~~~~~gy 292 (331)
+| ++||++..++.+++++|+++=+..+
T Consensus 234 ~k-tLP~Ai~isi~lvt~iYil~NvAy~ 260 (479)
T KOG1287|consen 234 RR-TLPRAILISIPLVTVIYVLVNVAYF 260 (479)
T ss_pred cc-cchHHHHHhhHHHHHHHHHhHhhee
Confidence 77 7999999999999999998765433
No 31
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.55 E-value=3.4e-13 Score=127.35 Aligned_cols=236 Identities=13% Similarity=0.101 Sum_probs=155.4
Q ss_pred cccCCCcHHHHHHHHHhhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHH
Q 020087 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~ 113 (331)
+.+|+.+.++..+..++.+||+|++..|.. .+++|- ..++.+++.+++....+..+.|...+.|..+ ++.+.+++.
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aG--g~y~~~~~~ 85 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVAG--SFSHFAYKY 85 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Confidence 467899999999999999999999988866 555564 5777888899999999999999888788766 677778999
Q ss_pred hCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 020087 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (331)
Q Consensus 114 ~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~ 193 (331)
+||..+ ++..+..++.....+.+.....+++++...+. .....+.++...+.. ..-.+..+....++.+.
T Consensus 86 ~g~~~g-f~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~--------~~~~~~~~i~~~~~~-~lN~~gv~~~~~~~~~~ 155 (456)
T PRK10238 86 WGSFAG-FASGWNYWVLYVLVAMAELTAVGKYIQFWYPE--------IPTWVSAAVFFVVIN-AINLTNVKVFGEMEFWF 155 (456)
T ss_pred cCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------CcHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHH
Confidence 999888 99999888887777777777677666544321 111222222222111 11222344444444433
Q ss_pred HHHHHHHHHhhhe---eeeeec-CCCc--cccccccc-cccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCC
Q 020087 194 AVMSLSYSTIAWS---ASVRKG-VQPD--VAYGYKAK-TAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSK 266 (331)
Q Consensus 194 ~~~~~~~~~~~~~---~~~~~~-~~~~--~~~~~~~~-~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~ 266 (331)
....+..++++++ ..+..+ ..+. .+..++.. ..+.++.++..+++...|+|.|.+......+|+ |||+|
T Consensus 156 ~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~----knP~r 231 (456)
T PRK10238 156 AIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEA----DNPEQ 231 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhh----cChhh
Confidence 3322221111111 000111 1111 11101111 113356678888889999999999999999999 99977
Q ss_pred ccchhHHHHHHHHHHHHHHHHH
Q 020087 267 GPMWRGVVVAYIVVALCYFPVA 288 (331)
Q Consensus 267 ~~~~~~~~~~~~~~~~~y~~~~ 288 (331)
++||++..+.....++|+...
T Consensus 232 -~iPrAi~~~~~~i~~~y~~~~ 252 (456)
T PRK10238 232 -SIPKATNQVIYRILIFYIGSL 252 (456)
T ss_pred -HHHHHHHHHHHHHHHHHHHHH
Confidence 699999988888888887643
No 32
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.55 E-value=3.3e-13 Score=129.13 Aligned_cols=249 Identities=12% Similarity=0.123 Sum_probs=150.5
Q ss_pred ccccCCCcHHHHHHHHHhhhhhhhhchHHHH-HHhhChh-HHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHH
Q 020087 34 ITSSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWG-PGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQ 111 (331)
Q Consensus 34 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-~~~~G~~-~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~ 111 (331)
.+.+|+.+.++.+...++.++|+|++..|.. ..++|-. ..++.+++.+++.......+.|.....|+.+ ......+
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sG--G~y~~~~ 115 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSG--GEYNYIL 115 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--chhhhHH
Confidence 4567889999999999999999999999876 4555642 2235567778888888899999887777654 4444558
Q ss_pred HHhCccccchhhHHHHHHH-HHHHHHHHHHHhccchHH-HHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHH
Q 020087 112 HAFGEKLGLYIVVPQQLIV-EVGVCIVYMVTGGKSLHK-VHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGV 189 (331)
Q Consensus 112 ~~~G~~~g~~~~~~~~~i~-~~g~~~~y~i~~~~~l~~-l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~ 189 (331)
+.+||..+ ++..+..++. ..+.+..+....++++.+ +.+... ...+... ...+..+.++-....+..+...++
T Consensus 116 ~~~g~~~g-f~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~---~~~~~~~-~i~~~~i~~~~~ln~~Gvk~~~~~ 190 (501)
T TIGR00911 116 EVFGPLLA-FLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCE---VPEWAIR-LVAVLCVLLLTLVNCLSVKWATRV 190 (501)
T ss_pred hHhCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---CchHHHH-HHHHHHHHHHHHHHHhhhHHHHHH
Confidence 89999888 6666544332 223344444555555322 221100 0011111 111111112222223455555555
Q ss_pred HHHHHHHHHHHHHhhheeee---eecCCCccccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCC
Q 020087 190 SLAAAVMSLSYSTIAWSASV---RKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSK 266 (331)
Q Consensus 190 s~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~ 266 (331)
+.+.....+..++++++..+ ..+.....++.........++.++..++....|+|.|.+.+....+|+ |||+|
T Consensus 191 ~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~----knP~r 266 (501)
T TIGR00911 191 QDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEV----KNPYR 266 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHh----cCchh
Confidence 55555443332222222111 111111111100001111346678889999999999999999999999 99977
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 020087 267 GPMWRGVVVAYIVVALCYFPVALIGYWM 294 (331)
Q Consensus 267 ~~~~~~~~~~~~~~~~~y~~~~~~gy~~ 294 (331)
+++|++..+..++.++|++..+.....
T Consensus 267 -~iPrAi~~s~~~v~~~Y~l~~~a~~~~ 293 (501)
T TIGR00911 267 -TLPIAIIISMPIVTFIYVLTNIAYFTV 293 (501)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999986554433
No 33
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.54 E-value=1.3e-12 Score=123.05 Aligned_cols=239 Identities=14% Similarity=0.125 Sum_probs=156.0
Q ss_pred cccCCCcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHh
Q 020087 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~ 114 (331)
+.+|+.|.++.....++.++|......+..++..|+..-++..++.++.....+..+.|...+.|+.+ .....+++.+
T Consensus 4 ~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~G--g~y~~~~~~~ 81 (442)
T TIGR00908 4 QLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAG--GGYGFARRAF 81 (442)
T ss_pred hhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHHh
Confidence 46788999999999999999844556678888889865556667777777777888999888787755 5666779999
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 020087 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (331)
Q Consensus 115 G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~ 194 (331)
||..| ++..+..++.......++....++++..+++.. ......++... ++-....+..+..++++.+..
T Consensus 82 G~~~g-f~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~--------~~~~~~~~~~~-~~~~ln~~g~~~~~~i~~~~~ 151 (442)
T TIGR00908 82 GPWGG-FLAGTAILIEFAFAPPAIACFIGAYCESLFPVG--------PGWLAALVFYI-VFIGINILGVGEAAKLEFVVT 151 (442)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--------chhHHHHHHHH-HHHHHHHHHHHHHHhHHHHHH
Confidence 99888 888888888777777788888888877665431 11122211111 111222234444444444433
Q ss_pred HHHHHHHHhhheeeeeecCCCcccc-cc-c-cccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccchh
Q 020087 195 VMSLSYSTIAWSASVRKGVQPDVAY-GY-K-AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWR 271 (331)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~-~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~ 271 (331)
...+..+++++.....+....+... .. + ....+.++.++..++....|+|.|++......+|+ |||+| +++|
T Consensus 152 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r-~ipr 226 (442)
T TIGR00908 152 AVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEET----KNPKR-DIPR 226 (442)
T ss_pred HHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCccc-ccCH
Confidence 3222222222111111100000000 00 0 01112345678888999999999999999999999 99987 6999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020087 272 GVVVAYIVVALCYFPVALI 290 (331)
Q Consensus 272 ~~~~~~~~~~~~y~~~~~~ 290 (331)
++..+..++.++|+.....
T Consensus 227 ai~~s~~~~~~~~~~~~~~ 245 (442)
T TIGR00908 227 GLIGAILTLLALAAGILVV 245 (442)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999988876543
No 34
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.54 E-value=3.6e-13 Score=123.49 Aligned_cols=237 Identities=14% Similarity=0.191 Sum_probs=161.7
Q ss_pred CCCcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCcc
Q 020087 38 RNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEK 117 (331)
Q Consensus 38 ~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~ 117 (331)
+|.|.+|....++++++|+|++.+|....+.+-..+++..++.+++.......+.+...+.|++ +..+..++++||+
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~---~~~~~~~~~~Gk~ 77 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK---NFSEILSKYLGKI 77 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHhhHH
Confidence 3678899999999999999999999998776656788888999999999999999988877764 6888999999998
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHH-HHHHHHhcCCCCchhHHHHHHHHHHH
Q 020087 118 LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIF-ASVHFVLSHLPNFNAIAGVSLAAAVM 196 (331)
Q Consensus 118 ~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~-~~~~~pl~~~~~~~~l~~~s~~~~~~ 196 (331)
.| +++.+...++............++.++... . + +.+.+.+.. .+++.-....+.++...+.+.+....
T Consensus 78 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l-~-----~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~ 147 (359)
T TIGR00912 78 LG-RLLSILFILYFFLIAAYLIRIFADFIKTYL---L-P-----RTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLII 147 (359)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c-C-----CCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 88 666665555555554444444444443321 1 1 123333322 22222233446788888888777765
Q ss_pred HHHH-HHhhheeeeeecCCCccccccccccccchHhHHHHHHH-HHHhHhccccchhhhhhhCCCCCCCCCCccchhHHH
Q 020087 197 SLSY-STIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALG-DVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV 274 (331)
Q Consensus 197 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~ 274 (331)
.+.. ++++....... .+.+.-. +....++.++..+.- ...++|.+.........++ |||+| .+|+..
T Consensus 148 ~i~~~~~il~~~~~~~---~~~~~l~--P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~----~~~~~--~~k~~~ 216 (359)
T TIGR00912 148 FLILFILVLILLAPKL---GNIKNLL--PVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLL----SKKKK--IKKSII 216 (359)
T ss_pred HHHHHHHHHHHHhccc---ccHHHcc--CccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHh----CChhh--hHHHHH
Confidence 5444 22222212111 1111111 112335566655554 7889999999999999998 77654 669999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCC
Q 020087 275 VAYIVVALCYFPVALIGYWMFGNK 298 (331)
Q Consensus 275 ~~~~~~~~~y~~~~~~gy~~fg~~ 298 (331)
.+..++.++|....+.....+|.+
T Consensus 217 ~~~~~~~~ly~~~~~~~i~~lg~~ 240 (359)
T TIGR00912 217 KAIIIGVLLYILTTFVSISVFGGN 240 (359)
T ss_pred HHHHHHHHHHHHHHHHHHheecHH
Confidence 999999999999988888888853
No 35
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.52 E-value=1.4e-12 Score=123.40 Aligned_cols=239 Identities=13% Similarity=0.145 Sum_probs=152.7
Q ss_pred cccCCCcHHHHHHHHHhhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHH
Q 020087 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~ 113 (331)
+.+|+.+.++.....++.++|+|++.+|.. .+.+|. ..++.+++.+++....+..+.|...+.|..+ ...+.+++.
T Consensus 6 ~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~G--g~y~y~~~~ 82 (457)
T PRK10580 6 KLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAAS--SFSRYAQEN 82 (457)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Confidence 356789999999999999999999999876 555665 4688889999999999999999988788654 566677999
Q ss_pred hCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 020087 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (331)
Q Consensus 114 ~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~ 193 (331)
+||..| +++.+..++.............+.++..+++. .....+.+...++ +-....+..+....++.+.
T Consensus 83 ~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l-~~~ln~~gv~~~~~~~~~~ 152 (457)
T PRK10580 83 LGPLAG-YITGWTYCFEILIVAIADVTAFGIYMGVWFPT--------VPHWIWVLSVVLI-ICAVNLMSVKVFGELEFWF 152 (457)
T ss_pred cCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------CChHHHHHHHHHH-HHHHHHccchhHHHHHHHH
Confidence 999888 88888776655544444444444444433221 1112232222222 2222233444444444333
Q ss_pred HHHHHHHHHhh-------heeeeeecCCC-cccccccc-ccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCC
Q 020087 194 AVMSLSYSTIA-------WSASVRKGVQP-DVAYGYKA-KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKP 264 (331)
Q Consensus 194 ~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p 264 (331)
....+..++++ ......+...+ +.+..+++ ...+.++.++..++....|+|.|.+.+....+|+ |||
T Consensus 153 ~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~----knP 228 (457)
T PRK10580 153 SFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEA----KDP 228 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHh----cCh
Confidence 22222111111 11111111111 11111111 1123456688889999999999999999999999 999
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHH
Q 020087 265 SKGPMWRGVVVAYIVVALCYFPVALIG 291 (331)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~y~~~~~~g 291 (331)
+| +++|++..+.....++|+......
T Consensus 229 ~k-~iPrAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 229 EK-SIPRAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 699999988888888888765443
No 36
>PRK10746 putative transport protein YifK; Provisional
Probab=99.52 E-value=1.7e-12 Score=122.78 Aligned_cols=243 Identities=12% Similarity=0.102 Sum_probs=157.0
Q ss_pred cccCCCcHHHHHHHHHhhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHH
Q 020087 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~ 113 (331)
+.+|+.+.++..+..++.+||+|++..|.. .+.+|. ..++.+++.+++.+..+..+.|.....|..+ ++.+.+++.
T Consensus 7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sG--g~~~y~~~~ 83 (461)
T PRK10746 7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTG--SFAVYAHRY 83 (461)
T ss_pred HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Confidence 356789999999999999999999987755 666776 4677888889999999999999988788766 778888999
Q ss_pred hCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 020087 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (331)
Q Consensus 114 ~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~ 193 (331)
+||++| +.+.+..++.......+.....+.+++.+.+. .....+..+...++..+ -.+..+..+.+....
T Consensus 84 ~g~~~G-f~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~--------~~~~~~~~~~~~~~~~l-N~~gv~~~~~~e~~~ 153 (461)
T PRK10746 84 MSPFFG-YLTAWSYWFMWMAVGISEITAIGVYVQFWFPE--------MAQWIPALIAVALVALA-NLAAVRLYGEIEFWF 153 (461)
T ss_pred hCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--------CchHHHHHHHHHHHHHH-HHHhHHHHHHHHHHH
Confidence 999889 88888888776666666666666665544321 12223322222222111 122333333332221
Q ss_pred HHHH---HHHHHh-hhe-eeeeecCC-C--cccccccc-ccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCC
Q 020087 194 AVMS---LSYSTI-AWS-ASVRKGVQ-P--DVAYGYKA-KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKP 264 (331)
Q Consensus 194 ~~~~---~~~~~~-~~~-~~~~~~~~-~--~~~~~~~~-~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p 264 (331)
.... +..+++ .+. .....+.. + +.++..++ ...+.++.++..++....|+|.|.+.+....+|+ |||
T Consensus 154 ~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~----knP 229 (461)
T PRK10746 154 AMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEA----KNP 229 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHh----cCh
Confidence 1111 111111 110 00011110 0 01110001 1123467889999999999999999999999999 999
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 020087 265 SKGPMWRGVVVAYIVVALCYFPVALIGYWMF 295 (331)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~y~~~~~~gy~~f 295 (331)
+| ++||++..+.....++|+..........
T Consensus 230 ~k-~iP~Ai~~~~~~i~~~yv~~~~~~~~~~ 259 (461)
T PRK10746 230 QV-TLRSAVGKVLWRILIFYVGAIFVIVTIF 259 (461)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHeeee
Confidence 87 7999999999999999997654433333
No 37
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.52 E-value=2.5e-12 Score=121.94 Aligned_cols=245 Identities=15% Similarity=0.120 Sum_probs=154.9
Q ss_pred CCCcHHHHHHHHHhhhhhhhhchHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc--ccccHHHHHHHHh
Q 020087 38 RNAKWWYSAFHNVTAMVGAGVLSLPYAMA-QLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGK--RFDRYHELGQHAF 114 (331)
Q Consensus 38 ~~~s~~~~~~~l~~~~iG~GiL~lP~~~~-~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~--~~~~y~~l~~~~~ 114 (331)
|+.++++.+...++++||+|++.+|.... .+|....++.+++.++........+.|...+.|+. ..+.| +++.+
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y---~~~~f 77 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSY---AKAGF 77 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhh---HHhHc
Confidence 57899999999999999999999998755 44543456668888888888899999988777752 33444 69999
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHH-HHHHHHHhcCCCCchhHHHHHHHH
Q 020087 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMI-FASVHFVLSHLPNFNAIAGVSLAA 193 (331)
Q Consensus 115 G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v-~~~~~~pl~~~~~~~~l~~~s~~~ 193 (331)
||..| ++..+..++.......++.....+++...++....+ .+...+... ..+..+.....+..+..++++.+.
T Consensus 78 G~~~g-f~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~ 152 (468)
T TIGR03810 78 GPFMG-FISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGG----NNPPSIIGASVLLWCVHFLVLRGVEGAAFINTIT 152 (468)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC----CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 99888 888887777665555666665555555554432210 111112211 111122222335666666666655
Q ss_pred HHHHHHHHHhhheee--eeecCCCccc-cc-cc-cccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCcc
Q 020087 194 AVMSLSYSTIAWSAS--VRKGVQPDVA-YG-YK-AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGP 268 (331)
Q Consensus 194 ~~~~~~~~~~~~~~~--~~~~~~~~~~-~~-~~-~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~ 268 (331)
....+..++.+++.. ..+......+ +. .+ .......+.++..++....|+|.|.+....+.+|. || ||+
T Consensus 153 ~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~----k~--~k~ 226 (468)
T TIGR03810 153 TIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARA----EK--RSD 226 (468)
T ss_pred HHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhc----cC--ccc
Confidence 543332222211111 1111100000 00 00 00112245567788999999999999999999998 76 457
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccC
Q 020087 269 MWRGVVVAYIVVALCYFPVALIGYWMFG 296 (331)
Q Consensus 269 ~~~~~~~~~~~~~~~y~~~~~~gy~~fg 296 (331)
++|++..+...+.++|++..+..+...+
T Consensus 227 ip~ai~~~~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 227 VGKATVIGLIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 8999999999999999998877665443
No 38
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.50 E-value=3.2e-12 Score=121.73 Aligned_cols=237 Identities=14% Similarity=0.127 Sum_probs=154.1
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CcccccHHHHHHHHh
Q 020087 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVP-GKRFDRYHELGQHAF 114 (331)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~-~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~-~~~~~~y~~l~~~~~ 114 (331)
+|+.+.++.....++.++|+|++..|.. .+.+|....++.+++.+++.......+.|...+.| ..+ .|.+.+++.+
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG--~~~~~~~~~~ 78 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSG--SFATYASRFV 78 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CHHHHHHHHc
Confidence 4678999999999999999999987754 66666443467788889999999999999988787 333 5777889999
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 020087 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (331)
Q Consensus 115 G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~ 194 (331)
|+++| ++..+..++.....+.+.....+.++..+.+ ......|..+..+ ++-+...+..+..++++.+..
T Consensus 79 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~in~~gv~~~~~~~~~~~ 148 (478)
T TIGR00913 79 DPAFG-FAVGWNYWLQWLIVLPLELVTASMTIQYWTD--------KVNPAVWIAIFYV-FIVIINLFGVKGYGEAEFWFS 148 (478)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------CCCHHHHHHHHHH-HHHHHHHhcchHHHHHHHHHH
Confidence 99888 8888888887776666666666666543321 1122233322222 212222334455444444333
Q ss_pred HHHHH---HHHhhheeeeeecCCCcc--c------c-ccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCC
Q 020087 195 VMSLS---YSTIAWSASVRKGVQPDV--A------Y-GYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPE 262 (331)
Q Consensus 195 ~~~~~---~~~~~~~~~~~~~~~~~~--~------~-~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~ 262 (331)
...+. .++++.+........... . . ++++......+.++..++....|+|.|.+......+|+ |
T Consensus 149 ~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k 224 (478)
T TIGR00913 149 SIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEA----A 224 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhh----c
Confidence 21111 111111111111100000 0 0 01000001236788899999999999999999999999 9
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHH
Q 020087 263 KPSKGPMWRGVVVAYIVVALCYFPVALI 290 (331)
Q Consensus 263 ~p~~~~~~~~~~~~~~~~~~~y~~~~~~ 290 (331)
||+| +++|++..+..++.++|++..+.
T Consensus 225 nP~r-~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 225 NPRK-SIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred Chhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9977 79999999999999999987544
No 39
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.50 E-value=1.5e-12 Score=117.68 Aligned_cols=249 Identities=15% Similarity=0.121 Sum_probs=177.8
Q ss_pred cccCCCcHHHHHHHHHhhhhhhhhc-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHH
Q 020087 35 TSSRNAKWWYSAFHNVTAMVGAGVL-SLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL-~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~ 113 (331)
+.+|..+.++--++-++..||+|.+ .-..+.+.+|- .-++..+++|++.++-+..+.|...+.|..+ ++.+.+++.
T Consensus 10 ~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGP-SvlLaY~I~G~~~f~iMRaLGEm~~~~p~~g--SF~~~a~~~ 86 (462)
T COG1113 10 GLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGP-SVLLAYLIAGIFVFLIMRALGEMLVANPVSG--SFSDYARKY 86 (462)
T ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--cHHHHHHHH
Confidence 3567888899999999999999976 77788888885 2455668889999999999999998888766 999999999
Q ss_pred hCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHH--HHhcCCCCchhHHHHHH
Q 020087 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVH--FVLSHLPNFNAIAGVSL 191 (331)
Q Consensus 114 ~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~--~pl~~~~~~~~l~~~s~ 191 (331)
+|++.| ++.++..++.....+++-+..++.+++.+++.. .++.+.++..+++ +-+..+|.+..+.+.-.
T Consensus 87 lG~~Ag-f~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v--------P~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfA 157 (462)
T COG1113 87 LGPWAG-FLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV--------PQWVFALAAVVLLLAVNLISVKVFGELEFWFA 157 (462)
T ss_pred hcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888 999999999999999999999999999988753 2233333333333 23445667777664433
Q ss_pred HHHHHHHHHHHhhheeeeeecCCC-----cccccccc-ccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCC
Q 020087 192 AAAVMSLSYSTIAWSASVRKGVQP-----DVAYGYKA-KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS 265 (331)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~ 265 (331)
+.-+..++..+++.+..+..+... +.+.-+++ .-.++++.+++.++-+.+|||.+.+.+-....|- |||+
T Consensus 158 lIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et----~dP~ 233 (462)
T COG1113 158 LIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEA----KDPE 233 (462)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhh----cChh
Confidence 333333333333222222221111 11111111 1246789999999999999999999999999999 9998
Q ss_pred CccchhHHHHHHHHHHHHHH-----HHHHHHhhccCCCCc
Q 020087 266 KGPMWRGVVVAYIVVALCYF-----PVALIGYWMFGNKVE 300 (331)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~y~-----~~~~~gy~~fg~~~~ 300 (331)
| .++|++.--..-..++|+ ++++.-+-.++++.+
T Consensus 234 k-~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~S 272 (462)
T COG1113 234 K-AIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGS 272 (462)
T ss_pred h-HHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCC
Confidence 8 588887766555555555 455555555555443
No 40
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.49 E-value=1.8e-12 Score=122.27 Aligned_cols=239 Identities=17% Similarity=0.196 Sum_probs=147.9
Q ss_pred cccCCCcHHHHHHHHHhhhhhhhhchHHHHH-HhhChh-HHHHHHHHHHHHHHHHHHHHHHhhhhcCCcc-cccHHHHHH
Q 020087 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAM-AQLGWG-PGVAILILSWIITLYTLWQMVEMHEMVPGKR-FDRYHELGQ 111 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~-~~~G~~-~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~-~~~y~~l~~ 111 (331)
+.+|+.+.++.....++.++|+|++..|... ...|-. ..++.+++.+++.......+.|.....|+.+ .+.| .+
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y---~~ 81 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVY---LK 81 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceee---HH
Confidence 4577899999999999999999999999764 445543 3566678888888888899999887776543 3444 47
Q ss_pred HHhCccccchhhHHHHHH-HHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHH
Q 020087 112 HAFGEKLGLYIVVPQQLI-VEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVS 190 (331)
Q Consensus 112 ~~~G~~~g~~~~~~~~~i-~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s 190 (331)
+.+||..+ ++..+..+. ........+....++++....+. .... .....+..+..+-..-.+..+...+++
T Consensus 82 ~~~g~~~g-f~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~------~~~~-~~~~~~~~~~~~~~ln~~gv~~~~~v~ 153 (445)
T PRK11357 82 NAGSRPLA-FLSGWASFWANDAPSLSIMALAIVSNLGFLTPI------DPLL-GKFIAAGLIIAFMLLHLRSVEGGAAFQ 153 (445)
T ss_pred HhcCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------chHH-HHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 88999888 777765433 23334445556666665433211 0000 111111111122222334555555555
Q ss_pred HHHHHHHHHHHHhhheee--eeecCCCccccccc-cccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCc
Q 020087 191 LAAAVMSLSYSTIAWSAS--VRKGVQPDVAYGYK-AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKG 267 (331)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~ 267 (331)
.+.....+..++++++.. ..... +.+...+ .......+.++..++....|+|.|.+......+|+ |||+|
T Consensus 154 ~~~~~~~~~~l~~~ii~g~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r- 226 (445)
T PRK11357 154 TLITIAKIIPFTIVIGLGIFWFKAE--NFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEI----KNPGK- 226 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCc--cccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHh----cCccc-
Confidence 544443332221111111 11111 1000000 00111235678888999999999999999999999 99987
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHH
Q 020087 268 PMWRGVVVAYIVVALCYFPVALIG 291 (331)
Q Consensus 268 ~~~~~~~~~~~~~~~~y~~~~~~g 291 (331)
+++|++..++.++.++|++.....
T Consensus 227 ~iP~Ai~~~~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 227 TMPRALIGSCLLVLVLYTLLALVI 250 (445)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999876643
No 41
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.43 E-value=2e-11 Score=115.12 Aligned_cols=224 Identities=15% Similarity=0.165 Sum_probs=143.3
Q ss_pred HHhhhhhhhhchHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCccccchhhHHHH
Q 020087 49 NVTAMVGAGVLSLPY-AMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQ 127 (331)
Q Consensus 49 l~~~~iG~GiL~lP~-~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~~~~ 127 (331)
.++.+||+|++..|. +++++|. ..++.+++.+++....+..+.|...+.|..+ ...+.+++.+||.+| +...+..
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~G--g~y~y~~~~~G~~~g-f~~gw~~ 78 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDTG--SFSTYADKAIGRWAG-YTIGWLY 78 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHcChHHH-HHHHHHH
Confidence 468899999998887 5778886 5888899999999999999999988788765 677777999999888 8888887
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHhhhee
Q 020087 128 LIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSA 207 (331)
Q Consensus 128 ~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~~ 207 (331)
++.............+.++....+. .....+.++...+ +-+.-.+..+..+.++.+.....+..++.+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~-~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~ 149 (446)
T PRK10197 79 WWFWVLVIPLEANIAAMILHSWVPG--------IPIWLFSLVITLA-LTGSNLLSVKNYGEFEFWLALCKVIAILAFIFL 149 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc--------CcHHHHHHHHHHH-HHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 7765555554444444433332111 1111222222211 112223344444444444433222222111111
Q ss_pred ee--eecCCC-ccccc----ccc-ccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccchhHHHHHHHH
Q 020087 208 SV--RKGVQP-DVAYG----YKA-KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIV 279 (331)
Q Consensus 208 ~~--~~~~~~-~~~~~----~~~-~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~ 279 (331)
.+ ..+..+ ....+ ++. ...+.++.++..++....|+|.|.+.+....+|+ |||+| +++|++..+...
T Consensus 150 ~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~----knP~r-~iPrai~~~~~~ 224 (446)
T PRK10197 150 GAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAES----DTPEK-HIVRATNSVIWR 224 (446)
T ss_pred HHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHh----cChhh-hHHHHHHHHHHH
Confidence 11 111111 00001 110 1123467789999999999999999999999999 99977 799999999999
Q ss_pred HHHHHHHHHHH
Q 020087 280 VALCYFPVALI 290 (331)
Q Consensus 280 ~~~~y~~~~~~ 290 (331)
+.++|++..+.
T Consensus 225 i~i~Yil~~~~ 235 (446)
T PRK10197 225 ISIFYLCSIFV 235 (446)
T ss_pred HHHHHHHHHHH
Confidence 99999986655
No 42
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.42 E-value=2.5e-11 Score=115.18 Aligned_cols=251 Identities=16% Similarity=0.196 Sum_probs=165.9
Q ss_pred cccCCCcHHH-HHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHH
Q 020087 35 TSSRNAKWWY-SAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (331)
Q Consensus 35 ~~~~~~s~~~-~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~ 113 (331)
+.+++.+.++ ......+.++|.|++.+|......+ ....+.+++.+++.......+.|.....|+.+ .+....++.
T Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~G--G~y~~~~~~ 85 (466)
T COG0531 9 ELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAG--GAYAYAKRA 85 (466)
T ss_pred hcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--Ceeeehhhh
Confidence 4556777788 8999999999999999998887765 22333356666666666777778777666555 455555999
Q ss_pred hCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHH--HHHHhcCCCCchhHHHHHH
Q 020087 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFAS--VHFVLSHLPNFNAIAGVSL 191 (331)
Q Consensus 114 ~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~--~~~pl~~~~~~~~l~~~s~ 191 (331)
+||+.+ ++..+..++.......+.....+.++..+++....-. .....+..+..+ .++-+.-.+..+...++..
T Consensus 86 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~ 161 (466)
T COG0531 86 LGPRLG-FLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLS---IGPLLIILIALALIALLTLLNLRGIKASAKINS 161 (466)
T ss_pred cCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhc---CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 998888 8888888888888888888877776666665311000 000122222222 2222333456666666666
Q ss_pred HHHHHHHHHHHhhheeeeeecCCCccccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccchh
Q 020087 192 AAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWR 271 (331)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~ 271 (331)
+.....+...+++.+..+............+.......+..+..++....++|.|.+...+..+|+ |||+| +++|
T Consensus 162 ~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~----knp~r-~ip~ 236 (466)
T COG0531 162 IITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEV----KNPKR-TIPR 236 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHh----cCccc-cccH
Confidence 666655554444433333222211100000001122345578899999999999999999999999 99977 5899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCC
Q 020087 272 GVVVAYIVVALCYFPVALIGYWMFGN 297 (331)
Q Consensus 272 ~~~~~~~~~~~~y~~~~~~gy~~fg~ 297 (331)
++..++.++.++|++.++......++
T Consensus 237 aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 237 AIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 99999999999999998877776664
No 43
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.42 E-value=1.1e-11 Score=114.49 Aligned_cols=239 Identities=14% Similarity=0.156 Sum_probs=180.8
Q ss_pred cccCCCcHHHHHHHHHhhhhhhhhc-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHH
Q 020087 35 TSSRNAKWWYSAFHNVTAMVGAGVL-SLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL-~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~ 113 (331)
+.+|++..+.-.++-++..||+|.+ +...+.+++|-...++..+++++..+..+..+.|.+...|..+ +|...+.+.
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sG--sF~~ya~rf 118 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSG--SFSTYATRF 118 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--chhhhhhhh
Confidence 4678888899999999999999977 8889999999998999999999999999999999998888655 788888999
Q ss_pred hCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhc--CCCCchhHHH-HH
Q 020087 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLS--HLPNFNAIAG-VS 190 (331)
Q Consensus 114 ~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~--~~~~~~~l~~-~s 190 (331)
..+.+| +.+.+..++....++...+...+..++...+.. .+...|+.++.++++.+. -+|......+ +|
T Consensus 119 vdpa~G-Fa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~-------v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s 190 (541)
T COG0833 119 VDPAFG-FALGWNYWLNWAVTLPLELTAASLVIQYWFPDT-------VPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFS 190 (541)
T ss_pred cCchHH-HHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCC-------CChHHHHHHHHHHHHHHHHhcccccceehHHHH
Confidence 999889 999999999888888888888888887776432 244678877766665554 4566655553 34
Q ss_pred HHHHHHHHHHHHhhheeeeeecCCCc---cccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCc
Q 020087 191 LAAAVMSLSYSTIAWSASVRKGVQPD---VAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKG 267 (331)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~ 267 (331)
.+-++.++.++++-++........++ .++-.++....+++.++...+-+..|+|+|.+.+--...|- +||+|
T Consensus 191 ~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs----~nP~K- 265 (541)
T COG0833 191 SIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGES----ENPRK- 265 (541)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeeccc----CCchh-
Confidence 44333333332222221111111111 01101123345678999999999999999999999999999 99987
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q 020087 268 PMWRGVVVAYIVVALCYFPVA 288 (331)
Q Consensus 268 ~~~~~~~~~~~~~~~~y~~~~ 288 (331)
.+||++.-.+.-..++|++.-
T Consensus 266 ~iPkAik~vfwRIl~FYi~si 286 (541)
T COG0833 266 SIPKAIKQVFWRILLFYILSI 286 (541)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999998643
No 44
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.36 E-value=1e-10 Score=105.49 Aligned_cols=235 Identities=14% Similarity=0.171 Sum_probs=165.4
Q ss_pred CCcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCccc
Q 020087 39 NAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKL 118 (331)
Q Consensus 39 ~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~ 118 (331)
|.|..|....+..+++|+|++.+|....+.+- -|++..++.++.......++.+..++.|++ +..|..++.+||+.
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~---~l~~~~~~~~Gk~l 76 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPGK---TLVEISEKLFGKWL 76 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHhCcHH
Confidence 46889999999999999999999999766652 566777777777777777777777666664 79999999999988
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHH-HHHhcCCCCchhHHHHHHHHHHHH
Q 020087 119 GLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASV-HFVLSHLPNFNAIAGVSLAAAVMS 197 (331)
Q Consensus 119 g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~-~~pl~~~~~~~~l~~~s~~~~~~~ 197 (331)
| .++.....++.+......+...++.++...-. +.+.|.+....+ +.--...+.++.+.+.+.+-....
T Consensus 77 g-~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp---------~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~ 146 (320)
T PF03845_consen 77 G-KIINLLYILYFLLISALVLREFSEFIKTYLLP---------ETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIF 146 (320)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------cCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 8 56666666666666665555555555543221 234454443333 333345578888888666666655
Q ss_pred HHHHHhhheeeeeecCCCccccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccchhHHHHHH
Q 020087 198 LSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAY 277 (331)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~ 277 (331)
+...+.+......+.. .+.- .+....++.++..+.....+.|.+.....-+...+ |||+| .+|....+.
T Consensus 147 ~i~~~~i~~~~~~~~~---~~~l--~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~----~~~~~--~~k~~~~~~ 215 (320)
T PF03845_consen 147 LILLLLILLLSIPNID---WDNL--LPVLESGIKPILKGSLVISFPFGGIEILLFLFPFV----KDKKK--LKKSLLIAI 215 (320)
T ss_pred HHHHHHHHHHhcccCC---HHHe--eCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCchH--HHHHHHHHH
Confidence 5554444443333221 1111 12234577888888888889999998888899999 77765 459999999
Q ss_pred HHHHHHHHHHHHHHhhccCCC
Q 020087 278 IVVALCYFPVALIGYWMFGNK 298 (331)
Q Consensus 278 ~~~~~~y~~~~~~gy~~fg~~ 298 (331)
..++++|...-+.....||.+
T Consensus 216 ~~~~~~~~~~~~~~i~vfG~~ 236 (320)
T PF03845_consen 216 LISGLFLLFIIFITIGVFGPE 236 (320)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 999999999988888999863
No 45
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.33 E-value=3.9e-11 Score=112.58 Aligned_cols=242 Identities=14% Similarity=0.133 Sum_probs=155.9
Q ss_pred CcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHHhhhhcCCcccccHHHHHHHHhCccc
Q 020087 40 AKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIIT-LYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKL 118 (331)
Q Consensus 40 ~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~-~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~ 118 (331)
.|+++.....++.++|+|++..| .+.+.|.. .++..++.+.+. ......+.|...+.|+.+ ......++.+||++
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~G--G~y~~~~~~~g~~~ 76 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAG--GIYVWVSRAFGPFW 76 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSST--THHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcC--eeeehhhhcccccc
Confidence 37899999999999999999999 66666653 666666666666 577777788766566554 56677799999988
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhH-HHHHHHHHHHhcCCCCchhHHHHHHHHHHHH
Q 020087 119 GLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYF-IMIFASVHFVLSHLPNFNAIAGVSLAAAVMS 197 (331)
Q Consensus 119 g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~-~~v~~~~~~pl~~~~~~~~l~~~s~~~~~~~ 197 (331)
| ++..+...+.......++....++++...+..... . +....+ ..+..++.......+..+..++++.......
T Consensus 77 g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 151 (426)
T PF13520_consen 77 G-FIVGWLYWVAYILSLASVASSFASYLLSLFGPDLN---P-SPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIK 151 (426)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGT---C-SHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred h-hcccceeEEEeeccccccccchhhhhhhccccccc---c-ccchheeeeecccccceEeeechhhhhhhhhhhhhhhh
Confidence 8 88888888877777777777777776665432110 0 111111 1122222233334456777777776666655
Q ss_pred H-HHHHhhheeeeeecCCCcccc-c-cccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccchhHHH
Q 020087 198 L-SYSTIAWSASVRKGVQPDVAY-G-YKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV 274 (331)
Q Consensus 198 ~-~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~ 274 (331)
+ ..++++++..+.....+.... . ..+...+..+..+..++....|+|.|.+..+...+|+ || |+++|++.
T Consensus 152 i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~----k~---k~ip~ai~ 224 (426)
T PF13520_consen 152 IVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEEN----KN---KTIPRAII 224 (426)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGS----SS---HHHHHHHH
T ss_pred hhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccc----cc---hhheeecc
Confidence 5 232222222222221111110 0 0001112244457899999999999999999999999 55 46889999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCC
Q 020087 275 VAYIVVALCYFPVALIGYWMFGN 297 (331)
Q Consensus 275 ~~~~~~~~~y~~~~~~gy~~fg~ 297 (331)
++..++.++|++..+......++
T Consensus 225 ~~~~~~~i~y~l~~~~~~~~~~~ 247 (426)
T PF13520_consen 225 ISIIIVAIIYILFSIALLGALPD 247 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTH
T ss_pred cchhHHHHHHhhhhheeeecccc
Confidence 99999999999987776666554
No 46
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.31 E-value=9e-10 Score=104.79 Aligned_cols=252 Identities=11% Similarity=0.007 Sum_probs=148.2
Q ss_pred cccCCCcHHHHHHHHHhhh-hhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHH
Q 020087 35 TSSRNAKWWYSAFHNVTAM-VGAGVLSLPYA-MAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQH 112 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~-iG~GiL~lP~~-~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~ 112 (331)
+.+|+.|.++.+..-++.+ +++|++.++.. ...+|- ..+..+++.++........+.|...+.|..+ .....+++
T Consensus 10 ~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aG--G~Y~~~~~ 86 (475)
T TIGR03428 10 QLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISG--AIYQWSRR 86 (475)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--CHHHHHHH
Confidence 4667899999999988875 89999988765 555555 5677778888888888999999888787655 45556689
Q ss_pred HhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHh--c-CCCCC-ccc--hhHHHH-HHHHHHHhcCCCCchh
Q 020087 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLC--K-EPCKE-IKL--SYFIMI-FASVHFVLSHLPNFNA 185 (331)
Q Consensus 113 ~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~--~-~~~~~-~~~--~~~~~v-~~~~~~pl~~~~~~~~ 185 (331)
.+||.++ ++..+..++.......+.......++..+.+... . ++... ... ..+.+. ..+++.-+...+..+.
T Consensus 87 ~~g~~~g-f~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~ 165 (475)
T TIGR03428 87 MGGEVIG-WFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEW 165 (475)
T ss_pred HcCcccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 9999888 8888877776554444444444444433322111 0 10000 000 111111 1111222222334555
Q ss_pred HHHHHHHHHHHHHHHHHhhheeeeeecCCCcccccccc---ccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCC
Q 020087 186 IAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKA---KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPE 262 (331)
Q Consensus 186 l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~ 262 (331)
..+++.+.....+..++++++........ +....... ...+.....+..+.....|+|.|.+....+.+|+ |
T Consensus 166 ~~~i~~~~~~~~i~~l~~iii~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~----k 240 (475)
T TIGR03428 166 MSRVNTIGVTCEIVGVLAVIGVLFTHAQR-GPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEET----K 240 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHh----c
Confidence 55555554443332222222211111111 00000000 0011123345566677789999999999999999 9
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHHhhccC
Q 020087 263 KPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFG 296 (331)
Q Consensus 263 ~p~~~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg 296 (331)
||+| ++||++..+..+..++|.++-+......+
T Consensus 241 nP~r-~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 241 NPRR-VAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred Ccch-hhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9987 79999999999888777665554444333
No 47
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.30 E-value=1.6e-11 Score=116.58 Aligned_cols=248 Identities=13% Similarity=0.067 Sum_probs=170.4
Q ss_pred ccccCCCcHHHHHHHHHhhhhhhhhc-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc-ccccHHHHHH
Q 020087 34 ITSSRNAKWWYSAFHNVTAMVGAGVL-SLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGK-RFDRYHELGQ 111 (331)
Q Consensus 34 ~~~~~~~s~~~~~~~l~~~~iG~GiL-~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~-~~~~y~~l~~ 111 (331)
.+.+|+.+.++-.++-++.+||+|++ ....+.++.|-..-++..+++++..+.++..+.|...+.|.. + ++...++
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aG--s~~~ya~ 103 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAG--SFYTYAY 103 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccc--cceeeee
Confidence 36788999999999999999999988 566778888888788888999999999999999998888863 3 4555558
Q ss_pred HHhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHH-HHhcCCCCCccchhHHHH--HHHHHHHhcCCCCchhHHH
Q 020087 112 HAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHE-LLCKEPCKEIKLSYFIMI--FASVHFVLSHLPNFNAIAG 188 (331)
Q Consensus 112 ~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~-~~~~~~~~~~~~~~~~~v--~~~~~~pl~~~~~~~~l~~ 188 (331)
+..|+-++ +.+.+..++.....+.+.+...+.+++.+.. ......-...+...|..+ ..++++.+.-++-....++
T Consensus 104 ~~i~e~~a-F~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef 182 (554)
T KOG1286|consen 104 RFVGESLA-FAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEF 182 (554)
T ss_pred eeeCcHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceee
Confidence 88999889 9999999999999999999999999999860 000000001111223222 2222333333444333343
Q ss_pred HHHHHHHHHHHHHHhhheeeeeecCCCcc--ccc----cc--cccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCC
Q 020087 189 VSLAAAVMSLSYSTIAWSASVRKGVQPDV--AYG----YK--AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPST 260 (331)
Q Consensus 189 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~--~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~ 260 (331)
......+.++.-++++.+ .+..+..+.+ .+. +. ..-.+.++.++.+.+.++.|+|.|.+.+-...+|-
T Consensus 183 ~~~~~kvl~~v~~~Il~i-Vi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~--- 258 (554)
T KOG1286|consen 183 SLAFNKILTAVGFIILAI-VIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEA--- 258 (554)
T ss_pred hHHHHHHHHHHHHHHhhe-eeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhc---
Confidence 333333322222111111 1122222221 111 11 11223348899999999999999999999999999
Q ss_pred CCCCCCccchhHHHHHHHHHHHHHHHHHHH
Q 020087 261 PEKPSKGPMWRGVVVAYIVVALCYFPVALI 290 (331)
Q Consensus 261 ~~~p~~~~~~~~~~~~~~~~~~~y~~~~~~ 290 (331)
|||+| .+|+++..++..++.+|++.++.
T Consensus 259 -kNP~k-~IP~ai~~s~~ri~~~Yi~~~~~ 286 (554)
T KOG1286|consen 259 -KNPRK-AIPKAIKQSLLRILLFYILSSIV 286 (554)
T ss_pred -cCCcc-cccHHHHHHHHHHHHHHHHHHHH
Confidence 99987 69999999999999999988764
No 48
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.21 E-value=9.3e-11 Score=111.67 Aligned_cols=239 Identities=15% Similarity=0.214 Sum_probs=152.7
Q ss_pred HHhhhhhhhhc-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCccccchhhHHHH
Q 020087 49 NVTAMVGAGVL-SLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQ 127 (331)
Q Consensus 49 l~~~~iG~GiL-~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~~~~ 127 (331)
.++.++|+|++ ..+.+..+.|....++..++.+++...++..+.|...+.|..+ ++.+.+++.+|++.| +...+..
T Consensus 6 ~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~G--g~y~y~~~~lg~~~G-f~~gw~y 82 (478)
T PF00324_consen 6 SIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAG--GFYAYASRGLGPALG-FAAGWAY 82 (478)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcccc--chhhhhhhccCCcCC-ceeeHHH
Confidence 46788999977 6667888888877788899999999999999999988877655 677788999999998 8888877
Q ss_pred HHHHHHHHHHHHHHhccchHHH--HHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHhhh
Q 020087 128 LIVEVGVCIVYMVTGGKSLHKV--HELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAW 205 (331)
Q Consensus 128 ~i~~~g~~~~y~i~~~~~l~~l--~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~ 205 (331)
++.............+..++.+ .+.... .+.+.. .+..+..+++..+. ....+..+.+...-....+..++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~i~~~~~~~l~-~~gv~~~~~~~~~~~~i~~~~li~~i 158 (478)
T PF00324_consen 83 WLSYIAAIAAEATAAGSFLQFWGYFPGLPS--TWVWGI-LIAIIFILLITLLN-LFGVRVSGKIEFILTIIKLIALIAFI 158 (478)
T ss_pred HHHHHHHHHhhhhhhhhhhccccccccccc--cccccc-hhhhhhhhhhhhhh-hhhhhccchHHHHHHHHhhhHhhhhh
Confidence 7766666666666666555544 222110 010100 11222222222222 22333333332222222222222222
Q ss_pred eee-e--eecCCCccc-----c-c----ccc---ccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccc
Q 020087 206 SAS-V--RKGVQPDVA-----Y-G----YKA---KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPM 269 (331)
Q Consensus 206 ~~~-~--~~~~~~~~~-----~-~----~~~---~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~ 269 (331)
+.. + ..+..+... + . .++ .+...++.++..++...+++|.|.+......+|. |||+| ++
T Consensus 159 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~----k~P~k-~I 233 (478)
T PF00324_consen 159 IVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEA----KNPRK-TI 233 (478)
T ss_pred hhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccC----CCchh-hh
Confidence 212 1 111111111 0 0 000 0112347899999999999999999999999999 99987 79
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 020087 270 WRGVVVAYIVVALCYFPVALIGYWMFGNKV 299 (331)
Q Consensus 270 ~~~~~~~~~~~~~~y~~~~~~gy~~fg~~~ 299 (331)
+|++..++....++|++.....-...+.+.
T Consensus 234 Pra~~~~~~~~~v~y~~~~~~~~~~~~~~~ 263 (478)
T PF00324_consen 234 PRATLLSVLRIGVFYVLTSYALTLAVPYDN 263 (478)
T ss_pred hhHhhhhhhhhhhhhhhhhhhcccccCccc
Confidence 999999999999999998887666666543
No 49
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.16 E-value=7.5e-09 Score=98.73 Aligned_cols=254 Identities=13% Similarity=0.035 Sum_probs=141.0
Q ss_pred cccCCCcHHHHHHHHHhhhhh--hhhch-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHH
Q 020087 35 TSSRNAKWWYSAFHNVTAMVG--AGVLS-LPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQ 111 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG--~GiL~-lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~ 111 (331)
+.+|+.+.++.+...++. +| .|+.. .+.++.+.|-...+..+++.+++....+..+.|...+.|..+ .....++
T Consensus 9 ~l~r~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~G--g~y~~~~ 85 (482)
T TIGR00907 9 ELKREFSLWSIFGFAFSI-SNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSG--GQYFWSA 85 (482)
T ss_pred eeecccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCc--cHHHHHH
Confidence 456778889988888884 44 66654 445677777755677888899999999999999988888655 5566668
Q ss_pred HHhCccccc---hhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHH--HHHHHhcCCCCchhH
Q 020087 112 HAFGEKLGL---YIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFA--SVHFVLSHLPNFNAI 186 (331)
Q Consensus 112 ~~~G~~~g~---~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~--~~~~pl~~~~~~~~l 186 (331)
+++|+++|+ ++..+...+.....+.+.....++++..+.....++.....+......+.. ..++-+...+..+..
T Consensus 86 ~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~~ 165 (482)
T TIGR00907 86 KLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALINSLPTKWL 165 (482)
T ss_pred HhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHHHhhHhHH
Confidence 888765442 555555555555555555556666666554322111000011111111111 111122222334444
Q ss_pred HHHHHHHHHHHHHHHHhhheeeeeecCC--Ccccccccc---cc--ccchHhHHHHHHHHHHhHhccccchhhhhhhCCC
Q 020087 187 AGVSLAAAVMSLSYSTIAWSASVRKGVQ--PDVAYGYKA---KT--AAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPS 259 (331)
Q Consensus 187 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~--~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~ 259 (331)
..++.+.....+...+++.+..+..... ...+....+ .. ...+...+..++....|+|.|.+......+|+
T Consensus 166 ~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~-- 243 (482)
T TIGR00907 166 PRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEI-- 243 (482)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhc--
Confidence 4444443332222222111111111110 000111100 00 01111245556666789999999999999999
Q ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHHhhccC
Q 020087 260 TPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFG 296 (331)
Q Consensus 260 ~~~~p~~~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg 296 (331)
|||+| +++|++..+..+..+++++..+..+...+
T Consensus 244 --knP~r-~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 244 --ENPEV-VGPRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred --CChhh-hcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99977 79999999988877665544443333333
No 50
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.12 E-value=1e-08 Score=98.13 Aligned_cols=238 Identities=16% Similarity=0.179 Sum_probs=133.3
Q ss_pred ccCCCcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHHhhhhcCC-cccccHHHHHHHH
Q 020087 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIIT-LYTLWQMVEMHEMVPG-KRFDRYHELGQHA 113 (331)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~-~~t~~~l~~~~~~~~~-~~~~~y~~l~~~~ 113 (331)
++|+.|+++.+...++.++|.+ .+|.++.+.|.. +++..++.+++. ......+.|.....|+ .+ .-....+++
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG--G~Y~w~~~~ 79 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKG--GIYSWMNKS 79 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--cHHHHHHHH
Confidence 4678999999999999999976 568888888863 555555555554 3456678888776774 23 344445999
Q ss_pred hCccccchhhHHHHHHHHHHHH---HH-------HHHHhccchHHHHHHHhcCCCCCccc-hhHHHHHHH--HHHHhcCC
Q 020087 114 FGEKLGLYIVVPQQLIVEVGVC---IV-------YMVTGGKSLHKVHELLCKEPCKEIKL-SYFIMIFAS--VHFVLSHL 180 (331)
Q Consensus 114 ~G~~~g~~~~~~~~~i~~~g~~---~~-------y~i~~~~~l~~l~~~~~~~~~~~~~~-~~~~~v~~~--~~~pl~~~ 180 (331)
+||++| ++..+..+....... .+ +.. .+.+..+..+.. ..+. ..+.++..+ .++-....
T Consensus 80 ~G~~~g-f~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~t~vn~ 151 (496)
T PRK15238 80 VGPKFA-FIGTFMWFASYIIWMVSTASKIWIPFSTFI-FGKDTTQTWHFL------GLNSTQVVGILAVIWMILVTFVAS 151 (496)
T ss_pred cCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcchhhhhhhh------cccchHHHHHHHHHHHHHHHHHHc
Confidence 999988 554433222221111 11 111 122211111100 0111 111111111 12333445
Q ss_pred CCchhHHHHHHHHHHHHHH----HHHhhheeeeeecCCCccccc---c-cc-ccccchHhHHHHHHHHHHhHhccccchh
Q 020087 181 PNFNAIAGVSLAAAVMSLS----YSTIAWSASVRKGVQPDVAYG---Y-KA-KTAAGTVFNFFSALGDVAFAYAGHNVVL 251 (331)
Q Consensus 181 ~~~~~l~~~s~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~---~-~~-~~~~~~~~~~~~a~~~~~faf~~~~~~~ 251 (331)
|.++..++++.++....+. .+++.++.....+.....+.. . +. .+...+..++..++....|+|.|.+...
T Consensus 152 ~g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~ 231 (496)
T PRK15238 152 KGINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVG 231 (496)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHH
Confidence 6777777777654432221 111111111111111100000 0 00 0111112357778888999999999999
Q ss_pred hhhhhCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHH
Q 020087 252 EIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIG 291 (331)
Q Consensus 252 ~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~~~g 291 (331)
...+|+ |||+| +++|++..+...+.++|++..+..
T Consensus 232 ~~a~E~----~~p~~-~~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 232 GLVDKT----ENPEK-NFPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred HHHHhc----cCCCc-cccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 99977 799999999999999999865443
No 51
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=99.07 E-value=1.1e-09 Score=88.35 Aligned_cols=211 Identities=16% Similarity=0.217 Sum_probs=136.5
Q ss_pred cHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhh---------cCCcc---------
Q 020087 41 KWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEM---------VPGKR--------- 102 (331)
Q Consensus 41 s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~---------~~~~~--------- 102 (331)
|-.-....+.|.++|+|-|++|.+|+.+||.+++.++.+.+..++.+....+++... ..+.+
T Consensus 13 sq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~st 92 (319)
T KOG3832|consen 13 SQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDEST 92 (319)
T ss_pred hhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccc
Confidence 445567789999999999999999999999999999999999999998888775311 00000
Q ss_pred ------------------------------------cccHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHhccch
Q 020087 103 ------------------------------------FDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSL 146 (331)
Q Consensus 103 ------------------------------------~~~y~~l~~~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l 146 (331)
+...++++...|.| .|..+..++++++.||....|...+....
T Consensus 93 asd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnk-vgln~fyf~iiiylfgdlaiyaaavpfs~ 171 (319)
T KOG3832|consen 93 ASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNK-VGLNFFYFAIIIYLFGDLAIYAAAVPFSA 171 (319)
T ss_pred cCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHh-hhHHHHHHHHHHHHhhhhhhhhhcCchHh
Confidence 01566788888886 78788999999999999999998888777
Q ss_pred HHHHHHHhc-CCCC-------C-----cc--------chhHHHHHHHH-HHHhcCCCCchhHHHHHHHHHHHHHHHHHhh
Q 020087 147 HKVHELLCK-EPCK-------E-----IK--------LSYFIMIFASV-HFVLSHLPNFNAIAGVSLAAAVMSLSYSTIA 204 (331)
Q Consensus 147 ~~l~~~~~~-~~~~-------~-----~~--------~~~~~~v~~~~-~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~ 204 (331)
-++.....+ +.|+ + |. .+++++++.++ .+|+.+. ++++.++++.+....--...+
T Consensus 172 m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~-- 248 (319)
T KOG3832|consen 172 MNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFI-- 248 (319)
T ss_pred hhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhcc--
Confidence 777665442 2222 1 11 12333333332 3355442 555555555554442211111
Q ss_pred heeeeeecCCCccccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhC
Q 020087 205 WSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATI 257 (331)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m 257 (331)
....+...+.. .| .-+..++...+-++-+.++..+|+|.+|+..|.....+
T Consensus 249 ~g~~l~tmqae-ed-aa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gag 299 (319)
T KOG3832|consen 249 LGISLATMQAE-ED-AAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAG 299 (319)
T ss_pred chhhhhhhhhc-cc-ccccCCccccccccccccchhhHHHHhhccCCCCCCCC
Confidence 11111111111 11 11112223345566677889999999999999998877
No 52
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.98 E-value=2.6e-08 Score=95.30 Aligned_cols=234 Identities=12% Similarity=0.058 Sum_probs=118.9
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHH--HHHHHHHHhhhhcC-C-cccccHHHHHHH
Q 020087 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITL--YTLWQMVEMHEMVP-G-KRFDRYHELGQH 112 (331)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~--~t~~~l~~~~~~~~-~-~~~~~y~~l~~~ 112 (331)
++|.|.++.+++.+..+. ++..+| .+++.|+ +.+.+.+.+.+.+ -.+....|.....+ . .+.+.|. ++
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~--~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv---~~ 74 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYP-TFATSGF--HLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWV---SN 74 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeeh---hh
Confidence 466898888888877774 557888 4667774 4455555554443 36777788766543 3 2234444 99
Q ss_pred HhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHH---HHHhcCCCCchhHHHH
Q 020087 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASV---HFVLSHLPNFNAIAGV 189 (331)
Q Consensus 113 ~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~---~~pl~~~~~~~~l~~~ 189 (331)
++|+++| +...+..++.......+........+..++.. +... .+ .....+..+. ++.+...+..+...++
T Consensus 75 a~G~~~G-f~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~---~~~~-~~-~~~~~i~~l~i~~~~t~~n~~G~k~~~~i 148 (507)
T TIGR00910 75 TLGERFG-FAAIFFGWFQIAIGFIPMIYFILGALSYILKF---PALN-ED-PIIKFIAALIIFWALAFSQFGGTKRTAKI 148 (507)
T ss_pred ccCccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---chhc-cC-cHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999998 66655555544322222111111111111110 0000 01 1111112111 2222233444444444
Q ss_pred HHHHHHHHHHH---HHhh-heeeeeecCCCccccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCC
Q 020087 190 SLAAAVMSLSY---STIA-WSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS 265 (331)
Q Consensus 190 s~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~ 265 (331)
+.++....+.. ++++ .+.....+.....+.+.....+.....+....+....|+|.|.+......+|+ |||+
T Consensus 149 ~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~----knP~ 224 (507)
T TIGR00910 149 AKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINEL----ENPG 224 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHc----cCCc
Confidence 44332211111 1111 11111111111111010000001111123344555689999999999999999 9997
Q ss_pred CccchhHHHHHHHHHHHHHHHHHH
Q 020087 266 KGPMWRGVVVAYIVVALCYFPVAL 289 (331)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~y~~~~~ 289 (331)
| +++|++..+++++.++|.+..+
T Consensus 225 r-~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 225 R-DYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred c-cccHHHHHHHHHHHHHHHHHHH
Confidence 7 7999999999999999986443
No 53
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.75 E-value=9e-07 Score=84.30 Aligned_cols=243 Identities=15% Similarity=0.125 Sum_probs=120.5
Q ss_pred CCcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHhhhhcCCcccccHHHHHHHHhCcc
Q 020087 39 NAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITL-YTLWQMVEMHEMVPGKRFDRYHELGQHAFGEK 117 (331)
Q Consensus 39 ~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~-~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~ 117 (331)
|.+.+.-+++.+..++ ++-.+|.. ++.|. ..++.+++.+++.. -.+....|.....|+.+ .....+++++|++
T Consensus 2 ~~~~~~l~~~~~~~v~--~~~~~~~~-a~~G~-~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~G--G~y~~~~~a~G~~ 75 (474)
T TIGR03813 2 KLTVVTLAIMNITAVV--SLRGLPAE-AEYGL-SAAFYYLFAAIFFLVPVSLVAAELATAWPEKG--GVFRWVGEAFGAR 75 (474)
T ss_pred cccHHHHHHHHHHHHH--HhhcchHH-HHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CceeeHhhhcChh
Confidence 4666666665555554 44455655 56775 34445555555443 46777788776666544 4555569999998
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCc--cchhHHHHHHH--HHHHhcCCCCchhHHHHHHHH
Q 020087 118 LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEI--KLSYFIMIFAS--VHFVLSHLPNFNAIAGVSLAA 193 (331)
Q Consensus 118 ~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~--~~~~~~~v~~~--~~~pl~~~~~~~~l~~~s~~~ 193 (331)
+| +...+..++.......+-+...+..+....+... ..... +......+..+ ..+.....+.++..+.++.+.
T Consensus 76 ~g-f~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~ 152 (474)
T TIGR03813 76 WG-FLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEAT--VDESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWG 152 (474)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc--cCcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 88 7776666654432111111111111111100000 00001 11111111111 122233445565555555433
Q ss_pred HHH-HHH---HHHhhheeeeeecCCCcccccccc-ccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCcc
Q 020087 194 AVM-SLS---YSTIAWSASVRKGVQPDVAYGYKA-KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGP 268 (331)
Q Consensus 194 ~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~ 268 (331)
... .++ .+++........+..+..+..+.. .+...++..+..+. ..+|+|.|.+.+....+|+ |||+| +
T Consensus 153 ~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~E~----knP~r-~ 226 (474)
T TIGR03813 153 GIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVKDV----DNPDK-N 226 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHHhc----cCccc-c
Confidence 211 111 111111110011111111111100 01111233333333 4578999999999999999 99987 6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccC
Q 020087 269 MWRGVVVAYIVVALCYFPVALIGYWMFG 296 (331)
Q Consensus 269 ~~~~~~~~~~~~~~~y~~~~~~gy~~fg 296 (331)
++|++..+..++.++|++..+.....-+
T Consensus 227 iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 227 YPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999987655444433
No 54
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.51 E-value=9e-06 Score=75.78 Aligned_cols=251 Identities=11% Similarity=0.094 Sum_probs=129.8
Q ss_pred cccCCCcHHHHHHHH---HhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHH
Q 020087 35 TSSRNAKWWYSAFHN---VTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQ 111 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l---~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~ 111 (331)
+-+|..++++.+..- ++.+-|. .-++.+.+..+|-..-.-.+++.+.+......-|.|.....|..+. -|--- .
T Consensus 45 ef~R~fs~~s~fg~sFs~~g~~~~i-~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGg-Ly~wa-a 121 (550)
T KOG1289|consen 45 ELKREFSLFSIFGISFSLMGLLPGI-ATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGG-LYFWA-A 121 (550)
T ss_pred hhhhhhhHHHHHHHHHHHhcchhhh-hhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCc-HHHHH-H
Confidence 345556655544333 3322211 1133444444454433444677777788888888887777774431 22222 2
Q ss_pred HHhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHH----HHh-cCCCCCccchhHHHHHHHHHHHhcCC--CCch
Q 020087 112 HAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHE----LLC-KEPCKEIKLSYFIMIFASVHFVLSHL--PNFN 184 (331)
Q Consensus 112 ~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~----~~~-~~~~~~~~~~~~~~v~~~~~~pl~~~--~~~~ 184 (331)
+.-+||++++...+.-+...++ +....++...+... ... .++..+.++.+...+..++++..+++ ..-+
T Consensus 122 ~lap~k~~~~~sw~~Gw~~~~g----~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~lln~~p~r 197 (550)
T KOG1289|consen 122 VLAPPKYGPFASWVTGWLNYLG----QATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGLLNSLPTR 197 (550)
T ss_pred HhcCcchhhHHHHHHHHHHHHH----HHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHHHHHhcCCcH
Confidence 3336777754444433333333 33333333222221 111 12222223333333333333333322 2345
Q ss_pred hHHHHHHHHHHHHHHHHHhhheeeeee-cCC---Ccccccc---cccc-ccchHhHHHHHHHHHHhHhccccchhhhhhh
Q 020087 185 AIAGVSLAAAVMSLSYSTIAWSASVRK-GVQ---PDVAYGY---KAKT-AAGTVFNFFSALGDVAFAYAGHNVVLEIQAT 256 (331)
Q Consensus 185 ~l~~~s~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~---~~~~-~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~ 256 (331)
-+++++.++....++.+++..+..... ... +..+..+ ++.+ .++.-..+.-.+-...+.+.|.....++.+|
T Consensus 198 ~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE 277 (550)
T KOG1289|consen 198 VLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEE 277 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHH
Confidence 566666666665555444433332221 111 1111111 1111 1223345566677778999999999999999
Q ss_pred CCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 020087 257 IPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGN 297 (331)
Q Consensus 257 m~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg~ 297 (331)
. ||++| +.+|++..+..+.+++=..+-+.-..+-++
T Consensus 278 ~----~nAsk-~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~ 313 (550)
T KOG1289|consen 278 T----KNASK-AAPRGIISSIAIGFILGWIIIIGIAYTIPD 313 (550)
T ss_pred h----cchhh-hccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9 99988 699999999998888887777666666664
No 55
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.42 E-value=0.00012 Score=69.12 Aligned_cols=251 Identities=12% Similarity=0.034 Sum_probs=140.3
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhchHHHHHHh--hChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHh
Q 020087 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQ--LGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (331)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~--~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~ 114 (331)
+|+.++++-+....+..+....+.+...... .++-.+++..++..++...-+.+...... +.+ .++..+.|..|
T Consensus 11 ~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~-r~G---l~~~v~sR~~F 86 (442)
T TIGR00800 11 ERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGA-KYG---LPFPVLSRASF 86 (442)
T ss_pred cCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHH-HhC---CCcchhhhhhh
Confidence 3445777766666666666555555544433 33444555555554554444444444444 223 36788889999
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCc-----cchhHHHHHHHHHHHhcCCCCchhHHHH
Q 020087 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEI-----KLSYFIMIFASVHFVLSHLPNFNAIAGV 189 (331)
Q Consensus 115 G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~-----~~~~~~~v~~~~~~pl~~~~~~~~l~~~ 189 (331)
|.+ |..+..+...+...|=........++.+..++....+..-... ......++...+.+++......+..++.
T Consensus 87 G~~-Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~ 165 (442)
T TIGR00800 87 GIY-GSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHLF 165 (442)
T ss_pred hhh-HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 985 5578888888888888888889999999998888653210000 1122233444555555555554444445
Q ss_pred HHHHHHHHHHHHHhhheeeeeecCCCccccccccccccchHhHHHHHHHHHHhHhcc-ccchhhhhhhCCCCCCCCCCcc
Q 020087 190 SLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAG-HNVVLEIQATIPSTPEKPSKGP 268 (331)
Q Consensus 190 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~-~~~~~~i~~~m~~~~~~p~~~~ 268 (331)
...+....+......+......+...+................+..+++..+-.+.. -.+.++..|.+ |++++..
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~----~~~~~~~ 241 (442)
T TIGR00800 166 EWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFG----KSKKTAI 241 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhc----CCccchH
Confidence 555554322222222111111111111000110011223456666666665444333 47899999999 6655543
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhc----cCCC
Q 020087 269 MWRGVVVAYIVVALCYFPVALIGYWM----FGNK 298 (331)
Q Consensus 269 ~~~~~~~~~~~~~~~y~~~~~~gy~~----fg~~ 298 (331)
+...+++....+....+++.+-.. +|+.
T Consensus 242 --~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~ 273 (442)
T TIGR00800 242 --WGQFLALPGGFTLTCFFGILGAAAAYAAYGEP 273 (442)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 667777777777777777776655 7754
No 56
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.05 E-value=0.00042 Score=60.91 Aligned_cols=223 Identities=17% Similarity=0.172 Sum_probs=130.0
Q ss_pred HHHHHHhhhhhhhhchHH---HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCccccch
Q 020087 45 SAFHNVTAMVGAGVLSLP---YAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLY 121 (331)
Q Consensus 45 ~~~~l~~~~iG~GiL~lP---~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~ 121 (331)
-.+..+++++|+|.-+== .-|..-|+. |+...++.+++-..++..+.+...+.+. ++|.|..++.+||+++ .
T Consensus 8 ~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~a---~~y~~~~~~v~~~~~~-k 82 (349)
T COG3949 8 WAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFNA---TSYREILKYVSGPKFA-K 82 (349)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhcc---cchHHHHHHHhhHHHH-H
Confidence 345566789999965422 223344553 6677777777778888888887765433 3899999999999998 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHH--HHHHHHHHHhcCCCCchhHHHHHHHHHHHHHH
Q 020087 122 IVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFI--MIFASVHFVLSHLPNFNAIAGVSLAAAVMSLS 199 (331)
Q Consensus 122 ~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~--~v~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~ 199 (331)
+.|..+.++.++.++......++.+++.+.. ++|. ++...++..+.++++.+++-..+.+-+...+.
T Consensus 83 i~d~~iif~lf~~~vVM~AGags~~~e~~~l-----------P~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~LIi 151 (349)
T COG3949 83 IIDIIIIFFLFSTAVVMLAGAGSLLEEMFGL-----------PYWIGALIIILLVLILLFLGRVEGIITVNGIITPFLII 151 (349)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHhCc-----------cHHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHHHH
Confidence 8999999999999998888888888877543 5554 33444444455566677766555554443332
Q ss_pred HHHhhheeeeeecCCCccccccccccccchHhHH---HHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccchhHHHHH
Q 020087 200 YSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNF---FSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVA 276 (331)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~ 276 (331)
....+.. .+.....+.+..++ .+...+|... ..++.+. .+..+..++-++| ++++.. .+....+
T Consensus 152 ~l~~v~~--~~~f~~~~~~a~~~-~~~~~~W~~~~~~Y~alNi~----~~~avLv~lg~~~----~~~~~~--~~g~l~g 218 (349)
T COG3949 152 ILVLVTL--SFQFTNLGNAAQIV-LTKQGNWKASAVGYGALNIL----VAVAVLVPLGGRM----ESRKVS--GIGGLIG 218 (349)
T ss_pred HHHHHHH--HHHHhhccchhhhc-CCcCCChHHHHHhhhhHHHH----hHhHhhhhhcccc----cccchh--hhhhhhh
Confidence 2222111 11111111111111 1112223221 2222221 2346667777888 666553 3666666
Q ss_pred HHHHHHHHHHHHHHHhhccC
Q 020087 277 YIVVALCYFPVALIGYWMFG 296 (331)
Q Consensus 277 ~~~~~~~y~~~~~~gy~~fg 296 (331)
-.+.+++..+.-..-...++
T Consensus 219 glIlgvl~~l~nlsLi~~~~ 238 (349)
T COG3949 219 GLILGVLLFLINLSLIALYD 238 (349)
T ss_pred hHHHHHHHHHHHHHHHhhcc
Confidence 66666655554443333343
No 57
>PRK11375 allantoin permease; Provisional
Probab=97.96 E-value=0.0065 Score=57.99 Aligned_cols=241 Identities=10% Similarity=-0.017 Sum_probs=117.0
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhchHHHHH--HhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHh
Q 020087 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAM--AQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (331)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~~--~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~ 114 (331)
+|+.++++-+....+..+..+.+.+..+. ...++-.+++..++..++...-+.+..+... +.+ .++..+.|..|
T Consensus 24 ~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~-~~G---l~~~v~sR~sF 99 (484)
T PRK11375 24 QRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGS-KYG---VPFAMILRASY 99 (484)
T ss_pred ccCCcHHHHHHHHHHHhccHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHhccccc-ccC---CChhHhHHHHH
Confidence 44566666665555555444333222221 1223334455555544444444444444333 222 47899999999
Q ss_pred CccccchhhHHHHH-HHHHHHHHHHHHHhccchHHHHHHHhcCCCC--------CccchhHH--HHHHHHHHHhcCCCCc
Q 020087 115 GEKLGLYIVVPQQL-IVEVGVCIVYMVTGGKSLHKVHELLCKEPCK--------EIKLSYFI--MIFASVHFVLSHLPNF 183 (331)
Q Consensus 115 G~~~g~~~~~~~~~-i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~--------~~~~~~~~--~v~~~~~~pl~~~~~~ 183 (331)
|.+ |-.+..+... +..++=-.......++.+..++....++... ..+...++ +++.++..++. ....
T Consensus 100 G~~-Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~-~~g~ 177 (484)
T PRK11375 100 GVR-GALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIG-FGGG 177 (484)
T ss_pred ccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHH-HcCH
Confidence 985 5355555553 3445544555566777777776654321000 01111122 23334444444 3566
Q ss_pred hhHHHHHHHHHHHHHHHHHhhheeeeeecCCC-ccccccc-cccccchHhHHHHHHHHHHhHhc-cccchhhhhhhCCCC
Q 020087 184 NAIAGVSLAAAVMSLSYSTIAWSASVRKGVQP-DVAYGYK-AKTAAGTVFNFFSALGDVAFAYA-GHNVVLEIQATIPST 260 (331)
Q Consensus 184 ~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~a~~~~~faf~-~~~~~~~i~~~m~~~ 260 (331)
+.++++..++........+...+..+.+.... -.+.... ..........+..++...+=++. ...+.|+..|..
T Consensus 178 ~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~--- 254 (484)
T PRK11375 178 KVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNA--- 254 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhccc---
Confidence 66766666666544333332222222221110 0001000 00111234555566655555555 446889999988
Q ss_pred CCCCCCccchhHHHHHHHHHHHHHHHHHH
Q 020087 261 PEKPSKGPMWRGVVVAYIVVALCYFPVAL 289 (331)
Q Consensus 261 ~~~p~~~~~~~~~~~~~~~~~~~y~~~~~ 289 (331)
|++++.. +...++..+...+...+|+
T Consensus 255 -k~~~~~~--~~~~~g~~i~~~~~~~~g~ 280 (484)
T PRK11375 255 -HSFRAQA--LGQTLGLVVAYILFAVASV 280 (484)
T ss_pred -CChhhhH--HHHHHHHHHHHHHHHHHHH
Confidence 6665533 5556666666665544443
No 58
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=97.88 E-value=0.0062 Score=58.08 Aligned_cols=157 Identities=13% Similarity=0.166 Sum_probs=99.5
Q ss_pred cccCCCcHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHHHH-HHHHHHHHH----HHHhhhhcCCcccccHHH
Q 020087 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSW-IITLYTLWQ----MVEMHEMVPGKRFDRYHE 108 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~g~i~~i~~~-~~~~~t~~~----l~~~~~~~~~~~~~~y~~ 108 (331)
...|+.+++.....+..+.+|++ .+..|....+.|+. ........ ...+..... +.+..+ +.+ ..|.+|
T Consensus 37 ~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~T~~e 111 (471)
T TIGR02119 37 LGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLG--WVLLAMIQVPTGYFVLGVLGKKFAIISR-KYN--AITIND 111 (471)
T ss_pred EeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC--CccHHH
Confidence 45678899999999999999987 55788777777763 11111111 111111122 222223 223 469999
Q ss_pred HHHHHhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHH
Q 020087 109 LGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAG 188 (331)
Q Consensus 109 l~~~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~ 188 (331)
+.++-||++..+.+..+...+..++...+.+...+..+++++. ++....+++..+++......-.++...+
T Consensus 112 ~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g---------i~~~~~iii~~~iv~iYt~~GG~~av~~ 182 (471)
T TIGR02119 112 VLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG---------LSYLTALFIFSSSVLIYTTFGGFRAVAL 182 (471)
T ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999766557777777776666666666666666666643 2334445555555666777789999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 020087 189 VSLAAAVMSLSYSTIAW 205 (331)
Q Consensus 189 ~s~~~~~~~~~~~~~~~ 205 (331)
...+..+..+...+++.
T Consensus 183 td~iQ~~v~~~~~~~~~ 199 (471)
T TIGR02119 183 TDAIQGIVMFTGTTILL 199 (471)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99988875555444333
No 59
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.80 E-value=0.00081 Score=60.32 Aligned_cols=107 Identities=16% Similarity=0.212 Sum_probs=85.0
Q ss_pred CCcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCccc
Q 020087 39 NAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKL 118 (331)
Q Consensus 39 ~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~ 118 (331)
..+.+..+.+=..++-|+|...=|..-.+.||.++.+..++.+++..-......-....+.+.+ |.+|++++..||+
T Consensus 51 P~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~--Si~~i~~~~lG~~- 127 (376)
T PF02554_consen 51 PTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGK--SIGEIAGKYLGKR- 127 (376)
T ss_pred CCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCc--cHHHHHHHHHHHH-
Confidence 3445677778888999999999998889999999999999998888888777777665444444 9999999999985
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhccchHH
Q 020087 119 GLYIVVPQQLIVEVGVCIVYMVTGGKSLHK 148 (331)
Q Consensus 119 g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~ 148 (331)
+|.+..+..++.......++....++.+.+
T Consensus 128 ~~~lf~~f~~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 128 AKKLFLIFIFFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 447777778887777777777766666554
No 60
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=97.78 E-value=0.008 Score=57.49 Aligned_cols=157 Identities=12% Similarity=0.139 Sum_probs=94.3
Q ss_pred cccCCCcHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHH---HHHHHHHHHHHHHHHHhhhhcCCcccccHHHHH
Q 020087 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAIL---ILSWIITLYTLWQMVEMHEMVPGKRFDRYHELG 110 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~g~i~~---i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~ 110 (331)
...|+.+++...+.+..+.+|++ .+..|....+.|+....... ....+...+-...+.+..+ +.+ ..|.+|+.
T Consensus 38 ~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~--~~T~~e~l 114 (483)
T PRK09442 38 LGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILAR-KYN--AVTLNDML 114 (483)
T ss_pred eeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC--CccHHHHH
Confidence 35677888888888888888775 66888776666763111110 1111111111222222223 223 46999999
Q ss_pred HHHhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHH
Q 020087 111 QHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVS 190 (331)
Q Consensus 111 ~~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s 190 (331)
++-||++..+.+..+...+..+......+...+..++.+++ ++....+++..+++......-.++...+..
T Consensus 115 ~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g---------i~~~~~iii~~~iv~iYt~~GGl~av~~TD 185 (483)
T PRK09442 115 RARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG---------ISYETGLLIFGITVALYTAFGGFRAVVLTD 185 (483)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999765546666655555555555566666666666543 233444455556666777888999999988
Q ss_pred HHHHHHHHHHHHh
Q 020087 191 LAAAVMSLSYSTI 203 (331)
Q Consensus 191 ~~~~~~~~~~~~~ 203 (331)
.+..+..+...++
T Consensus 186 ~iQ~~i~~~~~~v 198 (483)
T PRK09442 186 ALQGIVMLVGTVI 198 (483)
T ss_pred HHHHHHHHHHHHH
Confidence 8887755554333
No 61
>PRK12488 acetate permease; Provisional
Probab=97.72 E-value=0.0072 Score=58.70 Aligned_cols=153 Identities=17% Similarity=0.167 Sum_probs=95.9
Q ss_pred cccCCCcHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHH-HHHHHHHhhhhcCCcccccHHHHHHH
Q 020087 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLY-TLWQMVEMHEMVPGKRFDRYHELGQH 112 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~g~i~~i~~~~~~~~-t~~~l~~~~~~~~~~~~~~y~~l~~~ 112 (331)
-..|+.+++...+.+..+.+|++ .+..|......|+. ++ ...+...+.+. ....+.+-.++ .+ ..|.+|..++
T Consensus 64 laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~-~~~~g~~~g~~~~~~~~a~~lr~-~g--~~T~~d~l~~ 138 (549)
T PRK12488 64 TAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GL-LYALGVLAGWPIILFLIAERLRN-LG--KYTFADVVSY 138 (549)
T ss_pred eeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HH-HHHHHHHHHHHHHHHHHHHHHHH-CC--CcchHHHHHH
Confidence 34678899999999999988887 56899887778864 22 12221222221 12333433332 22 4699999999
Q ss_pred HhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 020087 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA 192 (331)
Q Consensus 113 ~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~ 192 (331)
-||.+..|.+..+...+..+.-....+...+..++.++. ++...-+++..+++..-+..-.++...+...+
T Consensus 139 Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g---------i~~~~~iii~~~i~~~Yt~~GGm~av~~td~i 209 (549)
T PRK12488 139 RLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG---------ISYLYAVVIVGALMVLYVTFGGMLATTWVQII 209 (549)
T ss_pred HcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 998555557776666665555555566666655555532 23334455555666666777789998888888
Q ss_pred HHHHHHHHH
Q 020087 193 AAVMSLSYS 201 (331)
Q Consensus 193 ~~~~~~~~~ 201 (331)
..+..+...
T Consensus 210 Q~~im~~~~ 218 (549)
T PRK12488 210 KAVLLLSGT 218 (549)
T ss_pred HHHHHHHHH
Confidence 877555443
No 62
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.70 E-value=0.00035 Score=66.70 Aligned_cols=221 Identities=15% Similarity=0.144 Sum_probs=116.7
Q ss_pred chHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhh--hcCCcccccHHHHHHHHhCccccchhhHHHHHHHHHHHHH
Q 020087 59 LSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHE--MVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCI 136 (331)
Q Consensus 59 L~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~--~~~~~~~~~y~~l~~~~~G~~~g~~~~~~~~~i~~~g~~~ 136 (331)
|=+++..-++|+...+..+++.-.+..+|..-++.... +..|.+ -|..+ .+.+|++.| --+....++.+...|.
T Consensus 88 LR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGG--aYymI-SRsLGpEfG-GSIGllFf~anV~~~a 163 (945)
T KOG1288|consen 88 LRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGG--AYYMI-SRSLGPEFG-GSIGLLFFVANVFNCA 163 (945)
T ss_pred HHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCc--eEEEE-EcccCcccC-CeeeehhhHHHHhcch
Confidence 45678888999988888888887777777766665433 122333 34444 445577666 4555556666666676
Q ss_pred HHHHHhccchHHHHHHHhcC--------CCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHhhheee
Q 020087 137 VYMVTGGKSLHKVHELLCKE--------PCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSAS 208 (331)
Q Consensus 137 ~y~i~~~~~l~~l~~~~~~~--------~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~~~ 208 (331)
.++..+.+-+-+.+..-..+ .-.||...+...+ ..+++.+|++- -.-.+..+.+-++.+......+.+..
T Consensus 164 m~isG~vE~il~nfG~~a~g~sg~~~lP~g~ww~fly~t~v-l~l~~~vc~lG-salfAkas~i~f~~is~s~~si~iS~ 241 (945)
T KOG1288|consen 164 MNISGFVEPILDNFGKEAQGASGSQFLPDGYWWRFLYTTLV-LALCLIVCLLG-SALFAKASNILFVVISVSLFSIPISF 241 (945)
T ss_pred hhhhhhhHHHHHhcCccccCCcccccCCCCcchhhHHHHHH-HHHHHHHHHhh-HHHHHhhhhhhhhHHHHHHhhhhhee
Confidence 66665554443333321111 0112332222222 22333344432 22233444444433322333333344
Q ss_pred eeecCCCcc-----ccccc-------------------------cccccchHhHHHHHHHHHHhHhccccchhhhhhhCC
Q 020087 209 VRKGVQPDV-----AYGYK-------------------------AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIP 258 (331)
Q Consensus 209 ~~~~~~~~~-----~~~~~-------------------------~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~ 258 (331)
++.+..... ++... ......+..+|-..+++++=+-.|.-.=-....|+
T Consensus 242 ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~F~g~tGimAGAnMSgEL- 320 (945)
T KOG1288|consen 242 IFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVFFPGTTGIMAGANMSGEL- 320 (945)
T ss_pred EEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheeeeccchhhhcCCCcCccc-
Confidence 444332111 00000 00011222345555666554444444444556667
Q ss_pred CCCCCCCCccchhHHHHHHHHHHHHHHHHHHH
Q 020087 259 STPEKPSKGPMWRGVVVAYIVVALCYFPVALI 290 (331)
Q Consensus 259 ~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~~~ 290 (331)
|+|+| .++|....++..++++|+++.+.
T Consensus 321 ---k~PSk-SIP~GTl~ava~Tf~~Yvl~~fl 348 (945)
T KOG1288|consen 321 ---KAPSK-SIPKGTLSAVAFTFFVYVLVIFL 348 (945)
T ss_pred ---cCccc-cCCccchHHHHHHHHHHHHHHHH
Confidence 99999 69999999999999999988764
No 63
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=97.60 E-value=0.0073 Score=56.43 Aligned_cols=151 Identities=15% Similarity=0.190 Sum_probs=97.4
Q ss_pred cCCCcHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhC
Q 020087 37 SRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFG 115 (331)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G 115 (331)
.|+.+++...+.+..+.+|++ .+..|....+.|+. +....+..............+..+ +.+ ..|..|+.++-||
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~T~~e~l~~Ryg 77 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFI-NNG--AYTMPEYLEKRFG 77 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HcC--CCchhHHHHHHhC
Confidence 367788888888888888875 66888877777853 222222222222333444444433 222 4699999999999
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 020087 116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAV 195 (331)
Q Consensus 116 ~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~~ 195 (331)
++..+.+..+...+..+......+...+..++.+++ ++....+++..++++.....-.++...+...+..+
T Consensus 78 ~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g---------i~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~ 148 (407)
T TIGR00813 78 KRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG---------LDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAV 148 (407)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------chHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 865656666666666777777777777777766653 23244445555555566677788888888888877
Q ss_pred HHHHH
Q 020087 196 MSLSY 200 (331)
Q Consensus 196 ~~~~~ 200 (331)
+.+..
T Consensus 149 i~~~~ 153 (407)
T TIGR00813 149 IMILG 153 (407)
T ss_pred HHHHH
Confidence 65443
No 64
>PRK09395 actP acetate permease; Provisional
Probab=97.59 E-value=0.014 Score=56.70 Aligned_cols=152 Identities=13% Similarity=0.132 Sum_probs=91.4
Q ss_pred cccCCCcHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHHhhhhcCCcccccHHHHHHH
Q 020087 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIIT-LYTLWQMVEMHEMVPGKRFDRYHELGQH 112 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~g~i~~i~~~~~~-~~t~~~l~~~~~~~~~~~~~~y~~l~~~ 112 (331)
...|+.+++...+.+..+.+|++ .+..|......|+.. .... +...+. ......+.+-.+ +.+.+|++|+.++
T Consensus 66 ~agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~~-~~~~~g~~~~~~~~~~~~r---~~g~~T~~d~l~~ 140 (551)
T PRK09395 66 TAGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIYS-IGFLVGWPIILFLIAERLR---NLGKYTFADVASY 140 (551)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHHH-HHHHHHHHHHHHHHHHHHh---hCCCccHHHHHHH
Confidence 34677888888888888888876 668998877778742 2111 111111 112223334333 2225799999999
Q ss_pred HhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 020087 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA 192 (331)
Q Consensus 113 ~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~ 192 (331)
-||++..|.+..+...+..+.-....+...+..++.++. ++...-+++..+++..-...-.++...+...+
T Consensus 141 Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g---------i~~~~~ili~~~i~~iYt~~GGm~av~~TD~i 211 (551)
T PRK09395 141 RLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG---------LNYHVAVVLVGVLMMVYVLFGGMLATTWVQII 211 (551)
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 999654446665555554444444445555555554432 23344455556666666777788888888888
Q ss_pred HHHHHHHH
Q 020087 193 AAVMSLSY 200 (331)
Q Consensus 193 ~~~~~~~~ 200 (331)
..+..+..
T Consensus 212 Q~iim~~g 219 (551)
T PRK09395 212 KAVLLLSG 219 (551)
T ss_pred HHHHHHHH
Confidence 87655443
No 65
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.57 E-value=0.024 Score=54.32 Aligned_cols=153 Identities=13% Similarity=0.094 Sum_probs=97.9
Q ss_pred ccCCCcHHHHHHHHHhhhhh-hhhchHHHHHHhhChhHHHHHHH---HHHHHHHHHHHHHHHhhhhcCCcccccHHHHHH
Q 020087 36 SSRNAKWWYSAFHNVTAMVG-AGVLSLPYAMAQLGWGPGVAILI---LSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQ 111 (331)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG-~GiL~lP~~~~~~G~~~g~i~~i---~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~ 111 (331)
..|+.+.+-.......+.++ .-++.+|....+.|+...++..- ...+.-.+-...+.+..+ ..+..|.+|+.+
T Consensus 36 ~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~---~~~~~T~~d~l~ 112 (493)
T COG0591 36 GGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAK---ARGATTIPDFLE 112 (493)
T ss_pred cCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCccHHHHHH
Confidence 45566666666677777777 66889999999899864444333 222223333333333332 223569999999
Q ss_pred HHhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHH
Q 020087 112 HAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSL 191 (331)
Q Consensus 112 ~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~ 191 (331)
+-||++..|.+..+...+..+.-+...+...+..++..+. . +...-.++.+.++..-...-.+++..+...
T Consensus 113 ~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i--------~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~ 183 (493)
T COG0591 113 ARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-I--------SYVTGILIGALIVALYTFLGGLRAVVWTDF 183 (493)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-C--------CHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence 9999546668888888888888888888888877755543 1 223333444555555566667777777777
Q ss_pred HHHHHHHHH
Q 020087 192 AAAVMSLSY 200 (331)
Q Consensus 192 ~~~~~~~~~ 200 (331)
+........
T Consensus 184 iqg~im~i~ 192 (493)
T COG0591 184 IQGLIMLIA 192 (493)
T ss_pred HHHHHHHHH
Confidence 776654443
No 66
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.49 E-value=0.019 Score=55.73 Aligned_cols=151 Identities=14% Similarity=0.159 Sum_probs=90.4
Q ss_pred ccCCCcHHHHHHHHHhhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHhhhhcCCcccccHHHHHHHH
Q 020087 36 SSRNAKWWYSAFHNVTAMVGA-GVLSLPYAMAQLGWGPGVAILILSWIITL-YTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (331)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~-GiL~lP~~~~~~G~~~g~i~~i~~~~~~~-~t~~~l~~~~~~~~~~~~~~y~~l~~~~ 113 (331)
..|+.+++...+.+..+.+++ ..+..|......|+- +.... +...+.+ .....+.+-.++ .+ .+|.+|..++-
T Consensus 65 aGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~-~g~~~~~~i~~~~~a~~lrr-~g--~~T~~d~l~~R 139 (549)
T TIGR02711 65 AGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYS-LGFLVGWPIILFLIAERLRN-LG--RYTFADVASYR 139 (549)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHH-HHHHHHHHHHHHHHHHHHHH-cC--CccHHHHHHHH
Confidence 456778888788888887776 577999877777863 22222 1122222 223344443332 23 47999999999
Q ss_pred hCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 020087 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (331)
Q Consensus 114 ~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~ 193 (331)
||.+..|.+..+...+..+.-....+...+..++.++. ++...-+++..+++..-...-.++...+...+.
T Consensus 140 f~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g---------i~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ 210 (549)
T TIGR02711 140 LKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG---------LNYHVAVVLVGILMVMYVLFGGMLATTWVQIIK 210 (549)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 98655556655555554444445555555555555432 222333455555556666777888888888888
Q ss_pred HHHHHHH
Q 020087 194 AVMSLSY 200 (331)
Q Consensus 194 ~~~~~~~ 200 (331)
.+..+..
T Consensus 211 ~~im~~g 217 (549)
T TIGR02711 211 AVLLLFG 217 (549)
T ss_pred HHHHHHH
Confidence 7755443
No 67
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.46 E-value=0.1 Score=49.00 Aligned_cols=283 Identities=12% Similarity=0.083 Sum_probs=140.1
Q ss_pred cccccccccccCCCcHHHHHHHHHhhhhhhhhchHHHHHHhhCh--hHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcc-c
Q 020087 27 AIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGW--GPGVAILILSWIITLYTLWQMVEMHEMVPGKR-F 103 (331)
Q Consensus 27 ~~~~~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~--~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~-~ 103 (331)
+++-.+..+++|+=++++-+....+...-.+.-.+....-+.|+ -..++.+++.-++....+.+-.+ .+.+ .
T Consensus 28 N~DL~P~~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~-----~G~~~g 102 (497)
T COG1953 28 NEDLAPTPAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGH-----AGSKYG 102 (497)
T ss_pred CCCCCCCccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccC-----cccccC
Confidence 33334444556666777766666655554444444444333443 22333333333333333333332 2222 3
Q ss_pred ccHHHHHHHHhCccccc--hhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcC---CCC---CccchhHHHHHHHHH-
Q 020087 104 DRYHELGQHAFGEKLGL--YIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKE---PCK---EIKLSYFIMIFASVH- 174 (331)
Q Consensus 104 ~~y~~l~~~~~G~~~g~--~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~---~~~---~~~~~~~~~v~~~~~- 174 (331)
-.|+.+.|.-||-+..+ .+......+..||.- .-..+..++-++....+. ..+ ..+....-.+..++.
T Consensus 103 IpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvq---ty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW 179 (497)
T COG1953 103 IPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQ---TYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFW 179 (497)
T ss_pred CCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHH
Confidence 58999999999963222 222222333333432 234555556666555432 011 111122222222221
Q ss_pred --HHhcCCCCchhHHHHHHHHHHHHHHHHHhhheeeeeecCCCccc-ccc-ccccccchHhHHHHHHHHHHhHhcc-ccc
Q 020087 175 --FVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVA-YGY-KAKTAAGTVFNFFSALGDVAFAYAG-HNV 249 (331)
Q Consensus 175 --~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~a~~~~~faf~~-~~~ 249 (331)
-.++..+..++++++-.....++.....-.+++...+....... ..+ ........+..+...+...+--|.. .-|
T Consensus 180 ~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN 259 (497)
T COG1953 180 VLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALN 259 (497)
T ss_pred HHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcC
Confidence 12345678888888888877766666666666554443221100 011 1122233344444444444333333 468
Q ss_pred hhhhhhhCCCCCCCCCCccchhHHHHHHHHHHHHHHHHH----HHHhhccCCC--CchhhhhCCCCChHHHHHHHHHHHH
Q 020087 250 VLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVA----LIGYWMFGNK--VEDNILLSLEKPTWLIVMANFFVVV 323 (331)
Q Consensus 250 ~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~----~~gy~~fg~~--~~~~il~~~~~~~~~~~~~~~~~~i 323 (331)
+|...|.- |+|+... ..-.+++.+.+.++-++| ..++..||+. .+.++.+++.+......++.+.+++
T Consensus 260 ~~DFsRfa----~s~~~~~--~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~i 333 (497)
T COG1953 260 IPDFTRFA----KSQKAQI--WGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAV 333 (497)
T ss_pred Cchhhccc----CChhhhh--hccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHH
Confidence 89998887 6655533 334455555555555554 4688899997 5568889987543332244444443
No 68
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.41 E-value=0.065 Score=49.67 Aligned_cols=226 Identities=15% Similarity=0.120 Sum_probs=126.0
Q ss_pred HHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCccccchh
Q 020087 43 WYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYI 122 (331)
Q Consensus 43 ~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~ 122 (331)
.....++.+-..|+.... .++-.+++..++..++...-+.+...... +.+ .++..+.|..||++ |..+
T Consensus 8 ~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~G~-~~G---l~~~v~sR~~FG~~-Gs~~ 75 (386)
T TIGR02358 8 FGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVIGA-DTG---LSAMGSLKLSLGSK-GSVL 75 (386)
T ss_pred HHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccC---cCHHHHHHHHHccc-hhhH
Confidence 344444445555443211 34444555555554544444444444433 223 36889999999985 5578
Q ss_pred hHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHH
Q 020087 123 VVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYST 202 (331)
Q Consensus 123 ~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~ 202 (331)
..+...+...|=-.......++.++.+++...+. .+...+..+..++..+.+. ...+.++++..+...+.....+
T Consensus 76 ~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~----~~~~~~~~i~~~l~~~~~~-~G~~~i~~~~~~~~~~~~i~~~ 150 (386)
T TIGR02358 76 PSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGE----ESPMLWILIVGILVTLWLL-SGPLAFVWLNNWSVWLLLIATL 150 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877778888899999988764321 1123344444444444443 4666777777777665554443
Q ss_pred hhheeeeeecCCCccccccccccccchHhHHHHHHHHHHhH-hccccchhhhhhhCCCCCCCCCCccchhHHHHHHHHHH
Q 020087 203 IAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFA-YAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVA 281 (331)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~fa-f~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~ 281 (331)
...+....+.... ...... . + ..+..+++...-. -..-...++..|.. |+|++ ......++..+..
T Consensus 151 ~~~~~~~~~~~~~---~~~~~~-~--~-~s~~~~~~~~~~~~~swa~~~~DysRy~----k~~~~--~~~~~~~G~~i~~ 217 (386)
T TIGR02358 151 WLLVVVFSKADLS---ELWNRA-G--D-MSFAVAVELVIAMPLSWLPLIADYTRFA----RNPRH--VFLGTVLGYFIGS 217 (386)
T ss_pred HHHHHHHhccchh---hhcCCC-C--C-ccHHHHHHHHHHHHHHHHHHccchhhhc----CCCcc--eehHHHHHHHHHH
Confidence 3333222221111 111111 1 1 2333333332211 12224578888887 65544 4477778888888
Q ss_pred HHHHHHHHHHhhccCCC
Q 020087 282 LCYFPVALIGYWMFGNK 298 (331)
Q Consensus 282 ~~y~~~~~~gy~~fg~~ 298 (331)
.+-.++|.....+.++.
T Consensus 218 ~~~~~~G~~~~~a~~~~ 234 (386)
T TIGR02358 218 CWMYFLGLAVTLATGQT 234 (386)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 88888888777766654
No 69
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.38 E-value=0.054 Score=50.46 Aligned_cols=181 Identities=14% Similarity=0.144 Sum_probs=100.3
Q ss_pred HHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCC--CCc
Q 020087 106 YHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHL--PNF 183 (331)
Q Consensus 106 y~~l~~~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~--~~~ 183 (331)
=..++|+.||.+ |.++..+.+.+.+.|-.....+..++...+. ...+...++++..+++...+.. |-+
T Consensus 83 qmi~sR~~fG~~-Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~---------~~~~~~~~ili~g~l~~l~~ifG~r~l 152 (442)
T COG1457 83 QMILSRYPFGVK-GSILPSLLNGITLIGWFGVNVILSGIAIGSG---------TGLPVWAGILIIGVLMTLVTIFGYRAL 152 (442)
T ss_pred hheeecccccch-hHHHHHHHHHHHHhhHHHHHHHHhccccccC---------CCCcHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344568889984 5599999999999998888888888761111 1233455666666555555443 444
Q ss_pred hhHHHHHHHHHHHHHHHHHhhheeeeeecCCCccccccccccccchHhHHHHHHHHHHhHhccc-cchhhhhhhCCCCCC
Q 020087 184 NAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGH-NVVLEIQATIPSTPE 262 (331)
Q Consensus 184 ~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~-~~~~~i~~~m~~~~~ 262 (331)
+.+++.+..-....+.+.+..+. .... ..+... ...+.++.++..+++.+.-.+... ....+..|.+ |
T Consensus 153 ~~l~~~a~~~~~~lf~~l~~~~~---~~~~--~~~~~~--~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~----~ 221 (442)
T COG1457 153 HKLERIAVPLLLLLFLYLLALLF---RSKG--GLDALW--VKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYA----P 221 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hccc--ccceee--ccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhc----C
Confidence 55554444444433333332222 2111 111111 122446667767776665555544 6777888888 4
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC-chhhhhCC
Q 020087 263 KPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKV-EDNILLSL 307 (331)
Q Consensus 263 ~p~~~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg~~~-~~~il~~~ 307 (331)
+|+.++.-.....+......+-.++|...-.+=|+.. ..+..+.+
T Consensus 222 ~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~ 267 (442)
T COG1457 222 SPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGL 267 (442)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhc
Confidence 4432122344445555555555667777777777655 33333333
No 70
>PRK11017 codB cytosine permease; Provisional
Probab=97.34 E-value=0.066 Score=49.96 Aligned_cols=205 Identities=14% Similarity=0.082 Sum_probs=98.4
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHhccchH
Q 020087 68 LGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLH 147 (331)
Q Consensus 68 ~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~ 147 (331)
.++-.+++..++..++...-..+...... +.+ .++..+.|..||.+ |..+..+...+...+=........+..++
T Consensus 39 Ls~~~ai~aiilG~~i~~~~~~l~~~~G~-k~G---~~~~v~sR~~FG~~-Gs~l~~~~~~i~~igW~av~~~~~~~~l~ 113 (404)
T PRK11017 39 LSFVDFLLAVLIGNLLLGIYTAALGYIGA-KTG---LSTHLLARFSFGEK-GSWLPSLLLGFTQVGWFGVGVAMFAIPVV 113 (404)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccC---cCHHHHHHHHhchh-HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444555555544444444444444333 223 47999999999985 54666666666555544444444444444
Q ss_pred HHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHhhheeeeeecCCCcccccccccccc
Q 020087 148 KVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAA 227 (331)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (331)
++.+ .+...+.++..++..+.... ..+.++++..+.........+...+..+.+....+.....+ +
T Consensus 114 ~~~~---------~~~~~~~~i~~~l~~~~~~~-G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~----~ 179 (404)
T PRK11017 114 KATG---------LDINLLIVLSGLLMTVTAYF-GISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIV----P 179 (404)
T ss_pred HHhC---------CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCC----C
Confidence 3321 11223444444554444433 34445555555544333322222222222211011100111 1
Q ss_pred chHhHHHHHHHHHHhHhcc-ccchhhhhhhCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 020087 228 GTVFNFFSALGDVAFAYAG-HNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGN 297 (331)
Q Consensus 228 ~~~~~~~~a~~~~~faf~~-~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg~ 297 (331)
.....+..++...+=.+.. -.+.++..|.. |++++. .....++..+...+-.++|...-...|+
T Consensus 180 ~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~----k~~~~~--~~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 180 AEPLDFSAALTLVVGSFISGGTLTADFVRFG----RSAKIA--VLATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred CCcccHHHHHHHHHHHHHHhHhcCCChHhhc----cCccce--eehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1123455555554444433 46888888887 555432 2445566556666666666655566665
No 71
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.25 E-value=0.012 Score=54.80 Aligned_cols=81 Identities=15% Similarity=0.117 Sum_probs=49.7
Q ss_pred CCCcHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcc-cccH-----HHHH
Q 020087 38 RNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKR-FDRY-----HELG 110 (331)
Q Consensus 38 ~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~-~~~y-----~~l~ 110 (331)
++.|.+|+....+.+.+|.| ++.+|-+....| .-++..+-+.+++...+.+..+.......+++ ..+| .++-
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~ 123 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIK 123 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHH
Confidence 45899999999999999998 999999977666 44534443444443333333333322221111 1136 6676
Q ss_pred HHHhCcccc
Q 020087 111 QHAFGEKLG 119 (331)
Q Consensus 111 ~~~~G~~~g 119 (331)
+...||+.+
T Consensus 124 ~gl~~k~lg 132 (425)
T TIGR00835 124 KGLGMRWLA 132 (425)
T ss_pred HHhCccHHH
Confidence 667677656
No 72
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.19 E-value=0.015 Score=53.40 Aligned_cols=217 Identities=16% Similarity=0.172 Sum_probs=100.2
Q ss_pred HHHHhhhhhhhhchHHHHH-HhhC--hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCccccchhh
Q 020087 47 FHNVTAMVGAGVLSLPYAM-AQLG--WGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIV 123 (331)
Q Consensus 47 ~~l~~~~iG~GiL~lP~~~-~~~G--~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~ 123 (331)
+.+..-.+|+|.|-.|-.. .++| |..+.+.+++.++..-....+ +....+. +|.++.++ +||+.+ .+.
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~----av~~~gG---~~~~l~~~-~g~~f~-~lf 72 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI----ALALVGG---GYDSLSAR-IGKVFG-ILF 72 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh----eeeecCC---CHHHHHHH-hChHHH-HHH
Confidence 3566778999999998663 3333 344555555555544433333 3323332 68888555 578777 333
Q ss_pred HHHHHHHHHH--------HHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHh---cCCCCchhHHHHHHH
Q 020087 124 VPQQLIVEVG--------VCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVL---SHLPNFNAIAGVSLA 192 (331)
Q Consensus 124 ~~~~~i~~~g--------~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl---~~~~~~~~l~~~s~~ 192 (331)
.+.+.+ ..| ..++|-.. +.+. .++.+. .....+..++.+-+ ...|.-|-..+++.+
T Consensus 73 ~~~~~l-~iGP~~aiPRtaa~s~e~~-------i~p~-~~~~~~----~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~ 139 (378)
T TIGR00796 73 TVILYL-TIGPLFAIPRTATVSFEMG-------IAPL-LHSPTS----LLALFIFSLIFFAVVLLLSLNPSKLIDRVGKF 139 (378)
T ss_pred HHHHHH-HHHhchhhhHHHHHHHHHH-------HHhc-cCcccc----hHHHHHHHHHHHHHHHHHHcCcccHHHHhHHH
Confidence 333322 122 12222222 1111 111111 12222333333333 222333334444444
Q ss_pred HHHHHHHHHHhhheeeeeecCCCccccccccccccchHhHHHHHHHHHHhHhc-------cccchhhhhh-hCCCCCCCC
Q 020087 193 AAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYA-------GHNVVLEIQA-TIPSTPEKP 264 (331)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~-------~~~~~~~i~~-~m~~~~~~p 264 (331)
-+...+..+.++++..+.+...+ ...+..+... -..+.+++----++++ +...+-.+.+ |+ |||
T Consensus 140 LTP~lLi~l~~lii~g~~~p~g~---~~~~~~~~~~-~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~----~~~ 211 (378)
T TIGR00796 140 LTPALLVTLLALIIKALLWPAGP---ILAASGAYAS-QQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGV----TKP 211 (378)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC---cCCccccccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCH
Confidence 44444443344444343332111 1111011100 0224444444444455 7777777777 88 778
Q ss_pred CCccchhHHHHHH---HHHHHHHHHHHHHHhhc
Q 020087 265 SKGPMWRGVVVAY---IVVALCYFPVALIGYWM 294 (331)
Q Consensus 265 ~~~~~~~~~~~~~---~~~~~~y~~~~~~gy~~ 294 (331)
+| ..++....+. .....+|.-.+.+|...
T Consensus 212 ~~-~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~ 243 (378)
T TIGR00796 212 KK-ITKYTIKAGLIAAVLLAFIYLSLFYLGATS 243 (378)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 66 3556666554 45556666666666554
No 73
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.18 E-value=0.049 Score=53.03 Aligned_cols=152 Identities=12% Similarity=0.092 Sum_probs=93.8
Q ss_pred cccCCCcHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHH
Q 020087 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~ 113 (331)
...|+.+++...+.+..+.++++ .++.|......|+. +....+............+.+..++. + ..|..|.-++-
T Consensus 29 laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~-~~~~~~g~~~~~~~~~~~~~p~~rr~-~--~~T~~e~l~~R 104 (552)
T TIGR03648 29 VAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYD-GLAYLMGWTGGYVLLALLLAPYLRKF-G--KYTVPDFIGDR 104 (552)
T ss_pred eeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHC-C--CccHHHHHHHH
Confidence 45678899999999999988775 66888777777763 21111111111122334455544422 2 46899999999
Q ss_pred hCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 020087 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (331)
Q Consensus 114 ~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~ 193 (331)
||++..+.+..+...+..+.-....+...+..++.++. ++...-+++..+++..-+..-.++...+...+.
T Consensus 105 f~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g---------i~~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ 175 (552)
T TIGR03648 105 YYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE---------VDFETGVFIGMAIVFFYAVLGGMKGVTWTQVAQ 175 (552)
T ss_pred hCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 98665556666666555555555555555555555442 233344455555566666777899988888888
Q ss_pred HHHHHH
Q 020087 194 AVMSLS 199 (331)
Q Consensus 194 ~~~~~~ 199 (331)
.+..+.
T Consensus 176 ~iim~i 181 (552)
T TIGR03648 176 YIVLIV 181 (552)
T ss_pred HHHHHH
Confidence 765444
No 74
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.00063 Score=64.09 Aligned_cols=233 Identities=20% Similarity=0.257 Sum_probs=128.8
Q ss_pred CCcHHHHHHHHHhh-hhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCcccccHHHHHHHHh
Q 020087 39 NAKWWYSAFHNVTA-MVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEM--VPGKRFDRYHELGQHAF 114 (331)
Q Consensus 39 ~~s~~~~~~~l~~~-~iG~G-iL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~--~~~~~~~~y~~l~~~~~ 114 (331)
+-+|++.++.-+-. +.|.= .|=+++...|+|...+++++.....++..|..--+....+ ..+.+ .|. +..+.+
T Consensus 29 ~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg--~yf-lis~sl 105 (643)
T KOG2083|consen 29 LFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGG--VYF-LISRSL 105 (643)
T ss_pred EEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCc--EEE-EEEecc
Confidence 45777666542221 23332 4467888999999988888877666555554433332221 11212 233 224556
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 020087 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (331)
Q Consensus 115 G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~ 194 (331)
|++.| -.+.+...+.+.-.+..|++.+++.+..++....... .+. ...+..++++-+ +.-+.+|...+..
T Consensus 106 g~efg-gsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~~~---i~g--i~~vt~~ill~i----~~ag~~w~~k~q~ 175 (643)
T KOG2083|consen 106 GPEFG-GSIGIIYAFANAVATAMYVVGFAESVAHLFETESKEM---IDG--IGSVTVLILLAI----NVAGVEWEAKLQI 175 (643)
T ss_pred ccccc-chhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccHHH---hcc--hhHHHHHHHHHh----hhccchhHHHHHH
Confidence 77776 6666666677777888899999999999988764211 111 111111111122 3344455555555
Q ss_pred HHHHHHHHhhheeeeeecCCCc-cc---cccc----cccccchH---hHHHHHHHHHHhHhccccchhhhhhhCCCCCCC
Q 020087 195 VMSLSYSTIAWSASVRKGVQPD-VA---YGYK----AKTAAGTV---FNFFSALGDVAFAYAGHNVVLEIQATIPSTPEK 263 (331)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~----~~~~~~~~---~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~ 263 (331)
++.++.++.+.-+.+.....++ .. .++. ......++ -.+|+.+++++=+..|.-.=.++..++ ++
T Consensus 176 ~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL----~~ 251 (643)
T KOG2083|consen 176 VLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDL----KD 251 (643)
T ss_pred HHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCC----CC
Confidence 5333332222211111111111 00 0000 00011122 256666777777777776667788888 99
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHH
Q 020087 264 PSKGPMWRGVVVAYIVVALCYFPVAL 289 (331)
Q Consensus 264 p~~~~~~~~~~~~~~~~~~~y~~~~~ 289 (331)
|++ .+++....+....+.+|+.+..
T Consensus 252 Pq~-~IP~GaL~Ai~vst~~yl~~i~ 276 (643)
T KOG2083|consen 252 PQK-AIPLGALLAIGVSTLLYLIFIA 276 (643)
T ss_pred chh-hcccchhhhhhhhhhhhhhhhh
Confidence 988 5899999999999999976543
No 75
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.10 E-value=0.0058 Score=57.71 Aligned_cols=242 Identities=14% Similarity=0.125 Sum_probs=120.3
Q ss_pred ccCCCcHHHHHHHHHhhhhhhhhchHHHHHHhh--ChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHH
Q 020087 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQL--GWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (331)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~--G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~ 113 (331)
++|+.++++-+....+..+....+.+....... ++-.+++..++..++...-.-....... +.+. +...+.|..
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~-r~Gl---~~~v~sR~~ 80 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGP-RTGL---PTMVLSRAS 80 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHH-CC------HHHHTTTT
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhccccc-ccCC---Cchhcchhc
Confidence 445567788888777777777777666655333 3344556666555555555555555444 3343 688888999
Q ss_pred hCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCC------CccchhHH--HHHHHHHHHhcCCCCchh
Q 020087 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCK------EIKLSYFI--MIFASVHFVLSHLPNFNA 185 (331)
Q Consensus 114 ~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~------~~~~~~~~--~v~~~~~~pl~~~~~~~~ 185 (331)
||. .|..+..+...+...|=........++.+..+++...+.... ......++ ++..++... ......+.
T Consensus 81 FG~-~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~g~~~ 158 (440)
T PF02133_consen 81 FGY-RGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTL-FAIYGMKA 158 (440)
T ss_dssp S-T-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHH-HHCTHHHH
T ss_pred cCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHH-HHhcCHHH
Confidence 997 576888888888888877778888899988888764320000 00011111 111122222 23356666
Q ss_pred HHHHHHHHHHHHHHHHHhhheeeeeecCCCccccccccccccchHhHHHHHHHHHHhHhcc-ccchhhhhhhCCCCCCCC
Q 020087 186 IAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAG-HNVVLEIQATIPSTPEKP 264 (331)
Q Consensus 186 l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~-~~~~~~i~~~m~~~~~~p 264 (331)
++.+..+.........+...+....+... +.....+.. ......+..++....-.+.. -.+.++..|.+ |++
T Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~----~~~ 231 (440)
T PF02133_consen 159 LRRLAVIAAPILLVVFIGMLIWALSKAGG-GPLLSAPAS--PSPSGSFLAAIALVIGSWISWAPNASDYSRYA----KSD 231 (440)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHCT--HHHCCS--S------S-HHHHHHHHHCCCHHHHCCCHHHHTTC------H
T ss_pred HHhHHhhhhHHHHhhhhheeEEEeecCCc-chhhhCccc--chhHHHHHHHHHHHHhhhhhhhhccccHHhhC----CCC
Confidence 66666655553333322222222222111 111110000 11111344444444333332 25567889988 544
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHh
Q 020087 265 SKGPMWRGVVVAYIVVALCYFPVALIGY 292 (331)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~y~~~~~~gy 292 (331)
++ -.+...++..........+++++.
T Consensus 232 ~~--~~~~~~~~~~~~~~~~~~~g~lg~ 257 (440)
T PF02133_consen 232 TS--AWWGFWLGFPGGFIPFVLVGILGA 257 (440)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC--cEEEEeehhhhHHHHHHHHHHHHH
Confidence 43 346777777766666666665543
No 76
>PRK15015 carbon starvation protein A; Provisional
Probab=97.06 E-value=0.0066 Score=58.36 Aligned_cols=144 Identities=21% Similarity=0.163 Sum_probs=91.4
Q ss_pred HHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCccccchh
Q 020087 43 WYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYI 122 (331)
Q Consensus 43 ~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~ 122 (331)
+-.+-+=..++-|+|.+.=|..-.+.||.++.+..++..++..-......-....+.+.| |.+|++++..|++.+ .+
T Consensus 86 ~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~Gr--Sig~ia~~~iG~~~~-~l 162 (701)
T PRK15015 86 KVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGR--SLGELVKEEMGPTAG-VI 162 (701)
T ss_pred cchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCCc--cHHHHHHHHhhHHHH-HH
Confidence 344557778899999999999988999999999999988887777666665544333433 999999999998654 66
Q ss_pred hHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhc-CCCCchhHHHHHHHHHHHHH
Q 020087 123 VVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLS-HLPNFNAIAGVSLAAAVMSL 198 (331)
Q Consensus 123 ~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~-~~~~~~~l~~~s~~~~~~~~ 198 (331)
..+.+++........+...+...+...-. -....+..+...+++-+. ..++.......+.+++++.+
T Consensus 163 fli~i~~iliiviAvfalvvv~al~~sP~---------~~fsv~~tIpiAl~mG~~l~~~r~g~v~~~SiiGvvll~ 230 (701)
T PRK15015 163 ALVACFMIMVIILAVLAMIVVKALTHSPW---------GTYTVAFTIPLALFMGIYLRYLRPGRIGEVSVIGLVFLI 230 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCcH---------HHHHHHHHHHHHHHHHHHheeecCCchHHHHHHHHHHHH
Confidence 66666666655555555555544422211 112233333333333332 22345555566666666443
No 77
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.05 E-value=0.099 Score=50.10 Aligned_cols=156 Identities=13% Similarity=0.055 Sum_probs=86.4
Q ss_pred cccCCCcHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcC--CcccccHHHHHH
Q 020087 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVP--GKRFDRYHELGQ 111 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~--~~~~~~y~~l~~ 111 (331)
...|+.+++-..+.+..+.+++. .+..|......|+...+. .....+........+.+-.+... +.+..|.+|+.+
T Consensus 33 lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~-~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~ 111 (487)
T TIGR02121 33 LGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWI-AIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFE 111 (487)
T ss_pred eeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHH
Confidence 34677888888888888888775 557887767778742211 11111112223334444333222 223568999999
Q ss_pred HHhCcccc--chhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHH
Q 020087 112 HAFGEKLG--LYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGV 189 (331)
Q Consensus 112 ~~~G~~~g--~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~ 189 (331)
+-||++.. +.+..+...+....-....+...+..++.+++ ++....+++..+++..-...-.++...+.
T Consensus 112 ~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g---------i~~~~~iii~~~i~~~Yt~~GGl~av~~T 182 (487)
T TIGR02121 112 NRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG---------LDYKTGLLIGALIIVIYTFFGGFLAVSWT 182 (487)
T ss_pred HHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------ccHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99996422 12233323322222233334444444444432 23234445555556666677788888888
Q ss_pred HHHHHHHHHHH
Q 020087 190 SLAAAVMSLSY 200 (331)
Q Consensus 190 s~~~~~~~~~~ 200 (331)
..+..+..+..
T Consensus 183 D~iQ~~i~~~~ 193 (487)
T TIGR02121 183 DFVQGLLMFFA 193 (487)
T ss_pred HHHHHHHHHHH
Confidence 88887755443
No 78
>PRK10484 putative transporter; Provisional
Probab=96.81 E-value=0.48 Score=45.87 Aligned_cols=156 Identities=11% Similarity=0.025 Sum_probs=80.9
Q ss_pred cccCCCcHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHH
Q 020087 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~ 113 (331)
-..|+.+++-..+.+..+.++++ .+..|....+.|+.... .....++........+.+..++ .+..|.+|+.++-
T Consensus 35 lagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~-~~~~~~~~~~~~~~~~~p~~~r---~~~~T~~e~l~~R 110 (523)
T PRK10484 35 LAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMA-WEVTAAIALIILALIFLPRYLK---SGITTIPDFLEER 110 (523)
T ss_pred ecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHH-HHHHHHHHHHHHHHHHHHHHHh---cCCccHHHHHHHh
Confidence 35678899988888888888876 55888777777764211 1111111111233333333332 2356999999999
Q ss_pred hCccccchhhHHHHHHHHHHH-HHHHHHHhccchHHHHHH--HhcCCCCCccch--hHH--HHHHHHHHHhcCCCCchhH
Q 020087 114 FGEKLGLYIVVPQQLIVEVGV-CIVYMVTGGKSLHKVHEL--LCKEPCKEIKLS--YFI--MIFASVHFVLSHLPNFNAI 186 (331)
Q Consensus 114 ~G~~~g~~~~~~~~~i~~~g~-~~~y~i~~~~~l~~l~~~--~~~~~~~~~~~~--~~~--~v~~~~~~pl~~~~~~~~l 186 (331)
||++.. .+......+..... +...+...+..+++++.. .. ..+.. .+. ++..++...-...-.++..
T Consensus 111 yg~~~~-~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~-----gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV 184 (523)
T PRK10484 111 YDKTTR-RIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELL-----GISYGAAIWLLVWLIGIIGAIYAVFGGLKAV 184 (523)
T ss_pred cCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhc-----CCcHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 998654 33333333222222 122222223333333211 11 11111 121 1223344455566788888
Q ss_pred HHHHHHHHHHHHHH
Q 020087 187 AGVSLAAAVMSLSY 200 (331)
Q Consensus 187 ~~~s~~~~~~~~~~ 200 (331)
.+...+..+..+..
T Consensus 185 ~~TD~iQ~vim~i~ 198 (523)
T PRK10484 185 AVSDTINGIGLLIG 198 (523)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887755443
No 79
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=96.71 E-value=0.63 Score=44.83 Aligned_cols=154 Identities=11% Similarity=0.061 Sum_probs=85.7
Q ss_pred cccCCCcHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHHhhhh--cCCcccccHHHHH
Q 020087 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIIT-LYTLWQMVEMHEM--VPGKRFDRYHELG 110 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~g~i~~i~~~~~~-~~t~~~l~~~~~~--~~~~~~~~y~~l~ 110 (331)
...|+.+++...+.+..+.+++. .++.|....+.|+..- ...+...+. ......+.+-... ..+.+..|.+|..
T Consensus 37 lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~--~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l 114 (502)
T PRK15419 37 LGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISES--WIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYF 114 (502)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHH
Confidence 45678899999999998888887 4588988778886431 111111122 1122222211110 0012246899999
Q ss_pred HHHhCccc--cchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHH
Q 020087 111 QHAFGEKL--GLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAG 188 (331)
Q Consensus 111 ~~~~G~~~--g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~ 188 (331)
++-||++. -+.+..+...+....-+...+...+..++.++. ++....+++..++++.-...-.++...+
T Consensus 115 ~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g---------i~~~~~iii~~~iv~iYt~~GGl~aV~~ 185 (502)
T PRK15419 115 TGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG---------MSYETALWAGAAATILYTFIGGFLAVSW 185 (502)
T ss_pred HHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999632 112233333333333333333344444444432 2333445555666666677788999999
Q ss_pred HHHHHHHHHHH
Q 020087 189 VSLAAAVMSLS 199 (331)
Q Consensus 189 ~s~~~~~~~~~ 199 (331)
...+..+..+.
T Consensus 186 TD~iQ~~imi~ 196 (502)
T PRK15419 186 TDTVQASLMIF 196 (502)
T ss_pred HHHHHHHHHHH
Confidence 98888875544
No 80
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=96.65 E-value=0.016 Score=54.17 Aligned_cols=157 Identities=17% Similarity=0.176 Sum_probs=87.3
Q ss_pred cCCCcHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhC
Q 020087 37 SRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFG 115 (331)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G 115 (331)
.|+.+++...+.+..+.+|++ ++..|....+.|+.. ....+...+........+.+..+ +.+ ..|.+|+-++-||
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r-~~~--~~T~~e~~~~Ryg 80 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLR-RSG--AVTIPEYLEKRYG 80 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHH-HTT----SHHHHHHHHT-
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhc-ccc--hhhhhhhhhhhcC
Confidence 467888989999999888885 668898888888753 22333333333344445555444 223 4699999999999
Q ss_pred ccc-cchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 020087 116 EKL-GLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (331)
Q Consensus 116 ~~~-g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~ 194 (331)
++. .+.+..+...+..+.-....+...+..++.+++ ++.....++..++++.....-.++...+...+..
T Consensus 81 ~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g---------i~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~ 151 (406)
T PF00474_consen 81 SKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG---------IPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQG 151 (406)
T ss_dssp HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHTTCTT------SHHHHHH
T ss_pred Cchhhhhhcccccchhhhhhhhccccccccchhhccc---------hhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHH
Confidence 865 345554444555555555566666655555432 2334455555666666677778888888888877
Q ss_pred HHHHHHHHhhhe
Q 020087 195 VMSLSYSTIAWS 206 (331)
Q Consensus 195 ~~~~~~~~~~~~ 206 (331)
++.+...+++.+
T Consensus 152 ~i~~~~~~~~~~ 163 (406)
T PF00474_consen 152 VIMIIGAIVVLI 163 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 755544443333
No 81
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=96.49 E-value=0.026 Score=53.20 Aligned_cols=103 Identities=20% Similarity=0.253 Sum_probs=75.9
Q ss_pred CcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCcccc
Q 020087 40 AKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLG 119 (331)
Q Consensus 40 ~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g 119 (331)
.+.+-.+-+=..++-|+|.+.=|.--++.||.++.+..++.+++..--...++-....+.+.+ |..|++++..|++.+
T Consensus 52 tnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~--Si~~ia~~~lG~~a~ 129 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGK--SIGEIAGKYLGRTAK 129 (575)
T ss_pred CCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCc--cHHHHHHHHhhhhHH
Confidence 344666677788899999999999999999999999999988888877777766554333433 999999999998666
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhccc
Q 020087 120 LYIVVPQQLIVEVGVCIVYMVTGGKS 145 (331)
Q Consensus 120 ~~~~~~~~~i~~~g~~~~y~i~~~~~ 145 (331)
.+..+..++........+....++.
T Consensus 130 -~~~~~~~l~iliiv~Avfa~vv~~~ 154 (575)
T COG1966 130 -VFFLLLALILLILVGAVFAAVIAKL 154 (575)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655555555444444444333
No 82
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=95.82 E-value=0.23 Score=48.64 Aligned_cols=100 Identities=15% Similarity=0.278 Sum_probs=68.4
Q ss_pred HHhhhhhhhhc-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCcccccHHHHHHHHhCccccchhhHH
Q 020087 49 NVTAMVGAGVL-SLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEM--VPGKRFDRYHELGQHAFGEKLGLYIVVP 125 (331)
Q Consensus 49 l~~~~iG~GiL-~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~--~~~~~~~~y~~l~~~~~G~~~g~~~~~~ 125 (331)
.+..+.|.=.+ =+-+..-.+|...++++.+++++.+..|..-+...+.. .+..+ +|--+ .+.+|+..| -.+.+
T Consensus 124 clQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGG--sYfmI-SRsLGPEFG-gAVGl 199 (1075)
T KOG2082|consen 124 CLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGG--SYFMI-SRSLGPEFG-GAVGL 199 (1075)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC--eeEEE-ecccCcccc-ceeee
Confidence 34445554433 56777888899999999999999999998888776642 44444 67666 455688788 67777
Q ss_pred HHHHHHHHHHHHHHHHhccchHH-HHHH
Q 020087 126 QQLIVEVGVCIVYMVTGGKSLHK-VHEL 152 (331)
Q Consensus 126 ~~~i~~~g~~~~y~i~~~~~l~~-l~~~ 152 (331)
+..+-.-.....|++..-+.+-. ++|.
T Consensus 200 cFYLgtT~AaaMYIlGaVEi~L~Yi~P~ 227 (1075)
T KOG2082|consen 200 CFYLGTTVAAAMYILGAVEIFLTYIFPA 227 (1075)
T ss_pred hhhhhhHHHHHHHHHhHHHHHHHHHccH
Confidence 77666666666777766665433 5554
No 83
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=95.57 E-value=0.5 Score=44.11 Aligned_cols=224 Identities=15% Similarity=0.088 Sum_probs=123.5
Q ss_pred hhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCccccchhhHHHHHHHHH
Q 020087 53 MVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEV 132 (331)
Q Consensus 53 ~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~~~~~i~~~ 132 (331)
|--+..|.++....-.|.= |.+..+ +.+..|....++-+.. ..+-+++|++|....-++.+..|++..+..++..+
T Consensus 57 MSaASflGiag~I~~~GYd-G~~Y~i--G~~~Gy~i~~fL~A~~-LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~ 132 (529)
T COG4147 57 MSAASFLGIAGLIFISGYD-GLIYSI--GWTGGYPILLFLIAEY-LRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSF 132 (529)
T ss_pred cchHhhhchhHhhhhcccc-hHHHHH--HHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 4444566677665555542 332222 2223333332222222 12233579999998888877777887777777666
Q ss_pred HHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHhhheeeeee-
Q 020087 133 GVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRK- 211 (331)
Q Consensus 133 g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~~~~~~- 211 (331)
.-.++.++..+..+..++.. +...-+++..+++..-..+-.++...|.+.+.-+..+...++..+....+
T Consensus 133 ~YliaQmvGaG~li~~l~gv---------~~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~ 203 (529)
T COG4147 133 LYLIAQMVGAGLLISLLLGV---------PYHVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKL 203 (529)
T ss_pred HHHHHHHHhhHHHHHHHhCC---------CceeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777777666666542 22344555666666667777888888888877664443322222211111
Q ss_pred cCCCcc--------cc---ccccccccchHhHHHHHHHHHHhHhccccchhhhhhh-CCCCCCCCCCccchhHHHHHHHH
Q 020087 212 GVQPDV--------AY---GYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQAT-IPSTPEKPSKGPMWRGVVVAYIV 279 (331)
Q Consensus 212 ~~~~~~--------~~---~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~-m~~~~~~p~~~~~~~~~~~~~~~ 279 (331)
+..+.+ .+ +....++.....+-...++.++---.|..-.|++.-. - .-|+-|.-++.+.++..+
T Consensus 204 ~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFf----Tvp~~k~AR~Sv~wA~~f 279 (529)
T COG4147 204 GGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFF----TVPDAKEARKSVFWATGF 279 (529)
T ss_pred cCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEE----ecCcHHHHHHHHHHHHHH
Confidence 111100 00 0001111112223344455554445566667776433 2 345556667999999999
Q ss_pred HHHHHHHHHHHHhh
Q 020087 280 VALCYFPVALIGYW 293 (331)
Q Consensus 280 ~~~~y~~~~~~gy~ 293 (331)
...+|+..-+.|+.
T Consensus 280 Ig~fYi~~~~ig~~ 293 (529)
T COG4147 280 IGIFYILTPIIGAG 293 (529)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999987665554
No 84
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=94.80 E-value=0.24 Score=46.21 Aligned_cols=68 Identities=15% Similarity=0.344 Sum_probs=55.1
Q ss_pred ccHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCC
Q 020087 104 DRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHL 180 (331)
Q Consensus 104 ~~y~~l~~~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~ 180 (331)
.-..+++++.+|+ .|..+..+...+.|+-++++....++|+++++.++ .+.+.|+++..++-+.++..
T Consensus 261 ~lL~~i~~~~~G~-~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~k--------isY~~~v~i~~i~S~~ian~ 328 (427)
T PF05525_consen 261 ELLSQIANHLFGS-AGQILLGIIVFLACLTTAIGLISACAEYFSELFPK--------ISYKVWVIIFTIFSFIIANL 328 (427)
T ss_pred HHHHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cChHHHHHHHHHHHHHHHHh
Confidence 4677889999997 78799999999999999999999999999999884 24467777766665555543
No 85
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=94.60 E-value=4.1 Score=38.36 Aligned_cols=267 Identities=13% Similarity=0.101 Sum_probs=129.5
Q ss_pred cccccccccccCCCcHHHHHHHHHhhhhhhhhchHHHHHHhhChh--HHHHHHHHHHHHHHHHHHHHHHhhhhcCCcc-c
Q 020087 27 AIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWG--PGVAILILSWIITLYTLWQMVEMHEMVPGKR-F 103 (331)
Q Consensus 27 ~~~~~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~--~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~-~ 103 (331)
+++-++..+.+|.=|+++-...-....++.+.-.+..+.-+.|+- .+++...+. +....+.-....++|.. .
T Consensus 43 N~DL~Pv~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG-----~~~~~~f~~lns~~G~~yh 117 (572)
T KOG2466|consen 43 NPDLKPVPPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVG-----YLFTAIFLVLNSRPGSDYH 117 (572)
T ss_pred CCCCCcCCcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHH-----HHHHHHHHHHccCCCcccc
Confidence 333344445566779999999999999999988888887777753 234333322 22222222222344432 2
Q ss_pred ccHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHH---HHhccchHHHHHHHhcCC----CCC----ccchhHH--HHH
Q 020087 104 DRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYM---VTGGKSLHKVHELLCKEP----CKE----IKLSYFI--MIF 170 (331)
Q Consensus 104 ~~y~~l~~~~~G~~~g~~~~~~~~~i~~~g~~~~y~---i~~~~~l~~l~~~~~~~~----~~~----~~~~~~~--~v~ 170 (331)
-+++-..|..||- +| ..+-++......|+=|- -..++.++-+++...+.. ++. .....++ +++
T Consensus 118 IsFpv~sR~sFGi-yg---S~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIF 193 (572)
T KOG2466|consen 118 ISFPVLSRSSFGI-YG---SLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIF 193 (572)
T ss_pred cceeeeeeeehhh-hH---hHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHH
Confidence 3666666777774 22 22223333334444333 356666666666555311 110 1112222 233
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHhhheeeeeecCCCcccc-ccccccccchHhHHHHHHHHHHhHhcc-cc
Q 020087 171 ASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAY-GYKAKTAAGTVFNFFSALGDVAFAYAG-HN 248 (331)
Q Consensus 171 ~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~faf~~-~~ 248 (331)
-++-+|+.+. ...+++.+-....+.+......++++...+...-+... +............+..++..++=.|.- ..
T Consensus 194 wv~s~~~~~~-~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~ 272 (572)
T KOG2466|consen 194 WVASLPFYWF-PPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIV 272 (572)
T ss_pred HHHhhheeec-cHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhc
Confidence 3334444443 44455555444444444444444444333322211100 111111111222333344333333332 46
Q ss_pred chhhhhhhCCCCCCCCCCccchhHHH--HHHHHHHHHHHHHHHHHhhccCCCC--chhhhhCC
Q 020087 249 VVLEIQATIPSTPEKPSKGPMWRGVV--VAYIVVALCYFPVALIGYWMFGNKV--EDNILLSL 307 (331)
Q Consensus 249 ~~~~i~~~m~~~~~~p~~~~~~~~~~--~~~~~~~~~y~~~~~~gy~~fg~~~--~~~il~~~ 307 (331)
+.|...|-- |+|.....+..+. +.+.++.++=++.+..++..||.+- +-++++++
T Consensus 273 N~pDFsRF~----ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~ 331 (572)
T KOG2466|consen 273 NAPDFSRFA----KSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQW 331 (572)
T ss_pred cCchhHhhc----CCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHH
Confidence 778888877 7776644333332 2333344444455667899999853 34666665
No 86
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=94.25 E-value=1.9 Score=40.33 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhhhhhhhchHHHHHH---hhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCccc
Q 020087 42 WWYSAFHNVTAMVGAGVLSLPYAMA---QLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKL 118 (331)
Q Consensus 42 ~~~~~~~l~~~~iG~GiL~lP~~~~---~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~ 118 (331)
.....+.+..-..|+|-|-.|-..- ..-|..+.+.+++.++.-- ++.-.+....+. ++.++++++ ||+.
T Consensus 5 ~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP----~Lgvia~~~~~~---~~~~l~~~v-~~~f 76 (427)
T PF05525_consen 5 ILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLP----LLGVIAVAKSGG---GIEDLASRV-GPKF 76 (427)
T ss_pred hhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHH----HHHHHHHhhcCC---CHHHHhccc-CcHH
Confidence 3566778889999999999996643 3445666666666555332 222222222222 688887666 5555
Q ss_pred c
Q 020087 119 G 119 (331)
Q Consensus 119 g 119 (331)
+
T Consensus 77 ~ 77 (427)
T PF05525_consen 77 A 77 (427)
T ss_pred H
Confidence 5
No 87
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=94.12 E-value=3.3 Score=38.61 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=32.7
Q ss_pred ccCCCcHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHH
Q 020087 36 SSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILIL 79 (331)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~g~i~~i~ 79 (331)
++++.|.+|++...+...+|+| |....-++.-.| +|.+.+..
T Consensus 15 ~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GG--PGAiFWMW 57 (416)
T PF01235_consen 15 EEGGISPFQALCTALAGTVGTGNIAGVATAIAIGG--PGAIFWMW 57 (416)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhc--hhHHHHHH
Confidence 4457899999999999999999 668888888776 34444443
No 88
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=93.71 E-value=5.5 Score=36.49 Aligned_cols=83 Identities=10% Similarity=0.137 Sum_probs=51.5
Q ss_pred cHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcC--CCC
Q 020087 105 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSH--LPN 182 (331)
Q Consensus 105 ~y~~l~~~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~--~~~ 182 (331)
+..|..++-+||+++ ++..+...+.......+.....+.-++.++ . .+...+.++..+..+.+.. .++
T Consensus 43 ~l~~~~~~~~g~~~~-~~~~~~~~l~~~~~~~~~~~g~a~al~ll~-g--------~~~~~~~~~~~~~~~~ll~~~~~~ 112 (358)
T PF01566_consen 43 GLAEGIRERFGRGWA-WFLWILIFLANIATQAAEIIGIAIALNLLF-G--------IPLWIWVLLVAVIAILLLWLSSGG 112 (358)
T ss_pred ChhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C--------CCcHHHHHHHHHHHHHHHHHHhcc
Confidence 788888888998776 777676767677776666666665555444 1 2335555555555444444 567
Q ss_pred chhHHHHHHHHHHHH
Q 020087 183 FNAIAGVSLAAAVMS 197 (331)
Q Consensus 183 ~~~l~~~s~~~~~~~ 197 (331)
.+.+..+...-....
T Consensus 113 y~~~E~~~~~lv~~m 127 (358)
T PF01566_consen 113 YRRLERILKVLVAVM 127 (358)
T ss_pred chHHHHHHHHHHHHH
Confidence 777666555444433
No 89
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=93.70 E-value=0.38 Score=44.31 Aligned_cols=76 Identities=16% Similarity=0.332 Sum_probs=55.6
Q ss_pred cccHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCC
Q 020087 103 FDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPN 182 (331)
Q Consensus 103 ~~~y~~l~~~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~ 182 (331)
..-..+++++.+|+ .|..+..+...+.|+.++++.....+|+++++.++ .+.+.|+++..+..+.++.. .
T Consensus 254 ~~~l~~~a~~~~G~-~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k--------~~y~~~v~~~~l~s~~ia~~-G 323 (378)
T TIGR00796 254 AQILSAYSQHLFGS-LGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK--------LSYKTWVIVFTLFSFIVANL-G 323 (378)
T ss_pred HHHHHHHHHHHcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHHHHHh-C
Confidence 34677889999997 67799999999999999999999999998888653 24455665555554444432 4
Q ss_pred chhHHH
Q 020087 183 FNAIAG 188 (331)
Q Consensus 183 ~~~l~~ 188 (331)
++.+-.
T Consensus 324 l~~Ii~ 329 (378)
T TIGR00796 324 LTQIIS 329 (378)
T ss_pred HHHHHH
Confidence 444433
No 90
>PRK00701 manganese transport protein MntH; Reviewed
Probab=93.44 E-value=7.1 Score=36.91 Aligned_cols=44 Identities=5% Similarity=0.071 Sum_probs=30.1
Q ss_pred cHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHH
Q 020087 105 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKV 149 (331)
Q Consensus 105 ~y~~l~~~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l 149 (331)
+..|+.++-+||++. ++..+...+.+.+.........+--++.+
T Consensus 95 ~l~~~ir~~~~~~~~-~~~~~~~~l~~~~~~~~e~~G~a~al~ll 138 (439)
T PRK00701 95 DLAQACRDRYPRPVV-WFLWIQAELAIMATDLAEVIGAAIALKLL 138 (439)
T ss_pred CHHHHHHHHCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999998666 66666666666666666666555444433
No 91
>PHA02764 hypothetical protein; Provisional
Probab=93.38 E-value=5.5 Score=35.49 Aligned_cols=92 Identities=14% Similarity=0.029 Sum_probs=56.2
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhchHHHHHHhh--ChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcc-cccHHHHHHHH
Q 020087 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQL--GWGPGVAILILSWIITLYTLWQMVEMHEMVPGKR-FDRYHELGQHA 113 (331)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~--G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~-~~~y~~l~~~~ 113 (331)
-|..|.+++++.-++.+-+....+.|+-+... |.. .+..+++.++++........+...+.|+.+ .+.|- +++
T Consensus 11 VREvs~lDAF~~Nl~~m~~Gi~Is~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYI---SRA 86 (399)
T PHA02764 11 IKSFNILDIFSINLLYMGILSGISYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYI---RTA 86 (399)
T ss_pred eeeccHHHHHHHHHHhhccchhHHHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEh---HHh
Confidence 35678888888555544333333556644433 332 456667777777777777777776666443 33444 899
Q ss_pred hCccccchhhHHHHHHHHHH
Q 020087 114 FGEKLGLYIVVPQQLIVEVG 133 (331)
Q Consensus 114 ~G~~~g~~~~~~~~~i~~~g 133 (331)
+|+++| ++..+..+.....
T Consensus 87 FGP~~G-FLvG~a~WLtl~~ 105 (399)
T PHA02764 87 FSSKFY-TIFGISLWLTYVL 105 (399)
T ss_pred hCccHH-HHHHHHHHHHHHh
Confidence 999777 6666655554333
No 92
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=93.11 E-value=0.9 Score=41.79 Aligned_cols=105 Identities=12% Similarity=0.187 Sum_probs=70.2
Q ss_pred HHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHhcc
Q 020087 65 MAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGK 144 (331)
Q Consensus 65 ~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~ 144 (331)
....|++.++.+.++-..+.+.+..-=..... -+++.+=..+..++.||+ .|+.+...++.+.|.-++++....++|
T Consensus 226 ~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~--~~nG~~IL~~~s~~~fG~-~G~~lL~~iv~lACLTTaiGLi~a~ae 302 (431)
T COG1114 226 TIKAGLIAAILLALIYLSLFYLGATSASAAGL--AANGGQILSAYSQHLFGS-YGSILLGLIVFLACLTTAVGLIVACAE 302 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHhhccc--ccchHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666655555544444444111110111 111234566778999997 788999999999999999999999999
Q ss_pred chHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCC
Q 020087 145 SLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHL 180 (331)
Q Consensus 145 ~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~ 180 (331)
+++++.+.. +...|..++.++-+.++..
T Consensus 303 fF~~~~p~~--------SY~~~v~if~i~sflvan~ 330 (431)
T COG1114 303 FFSKLVPKL--------SYKTWVIIFTLISFLVANL 330 (431)
T ss_pred HHHHhcccc--------cHHHHHHHHHHHHHHHHHh
Confidence 999998853 4567777777776655543
No 93
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=92.84 E-value=4.8 Score=37.62 Aligned_cols=106 Identities=19% Similarity=0.156 Sum_probs=65.7
Q ss_pred CCcHHHHHHHHHhhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCcc
Q 020087 39 NAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEK 117 (331)
Q Consensus 39 ~~s~~~~~~~l~~~~iG~GiL~lP~~-~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~ 117 (331)
+.......+++...-+|.|-++--.. =++-|+- .+..++...+..+-.+.++.-.-..++. +..|..++.++|+
T Consensus 16 ~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~--ll~vills~l~~~~~Q~~~arLgivTG~---~laq~ir~~y~~~ 90 (416)
T COG1914 16 LLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYS--LLWVILLSNLMAYILQELSARLGIVTGK---GLAEAIRERYLPG 90 (416)
T ss_pred HHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCC---cHHHHHHHHccch
Confidence 34555556666666666665544433 3344542 3333333444444444443322224443 6889999999998
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhccchHHHH
Q 020087 118 LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVH 150 (331)
Q Consensus 118 ~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~ 150 (331)
++ ++..+...+....+.++..+..+-.++-++
T Consensus 91 ~~-~~~~~~~~i~~~at~iae~~G~aial~ll~ 122 (416)
T COG1914 91 LG-ILLWILAEIAGIATDIAEVAGIAIALNLLF 122 (416)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88 888888888888888888888777766665
No 94
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=90.35 E-value=12 Score=35.17 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=42.3
Q ss_pred cHHHHHHHHHhhhhhhhhchHHHHHH-h--hChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCcc
Q 020087 41 KWWYSAFHNVTAMVGAGVLSLPYAMA-Q--LGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEK 117 (331)
Q Consensus 41 s~~~~~~~l~~~~iG~GiL~lP~~~~-~--~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~ 117 (331)
..+...+.+..-..|+|-|-.|-..- + .-|..+.+.+++.++ ..=++.-.+....+ + ++.++++++ ||+
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~V----glPlLgiiava~~~-g--~~~~l~~rv-~~~ 80 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAV----GLPVLTVVALAKVG-G--GVDSLSTPI-GKV 80 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHH----HHHHHHHHHHhhcC-C--CHHHHhhhc-chH
Confidence 35677888999999999999996643 2 334555555555443 33333322222222 1 688887776 555
Q ss_pred cc
Q 020087 118 LG 119 (331)
Q Consensus 118 ~g 119 (331)
.+
T Consensus 81 f~ 82 (439)
T PRK15433 81 AG 82 (439)
T ss_pred HH
Confidence 55
No 95
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=89.17 E-value=20 Score=33.69 Aligned_cols=237 Identities=13% Similarity=0.093 Sum_probs=116.1
Q ss_pred CcHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhh-hcC-CcccccHHHHHHHHhCc
Q 020087 40 AKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHE-MVP-GKRFDRYHELGQHAFGE 116 (331)
Q Consensus 40 ~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~-~~~-~~~~~~y~~l~~~~~G~ 116 (331)
.|...-+...+++.+|.| +--.||...+-|-..-++..++ ..+..=--.++.|... ++. ++...+|..+.. +|
T Consensus 9 ~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli-~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~---~~ 84 (439)
T COG0733 9 SSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLI-FLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAP---KK 84 (439)
T ss_pred hhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHH-HHHHHhHHHHHHHHHhhhhcCCChhHHHHHhcc---Cc
Confidence 355677778889999999 5699999877775433333333 3333322334444432 111 111235555543 33
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCC--CCC--------ccc-hhHHHHH---HHHHHHhcCCCC
Q 020087 117 KLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEP--CKE--------IKL-SYFIMIF---ASVHFVLSHLPN 182 (331)
Q Consensus 117 ~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~--~~~--------~~~-~~~~~v~---~~~~~pl~~~~~ 182 (331)
+ . ..+.+..+...+..+.-|.+..+=.+..+.....+.. ..+ ... ....... ..++--+...|.
T Consensus 85 ~-~-~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~G 162 (439)
T COG0733 85 K-W-EWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRG 162 (439)
T ss_pred c-c-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHh
Confidence 3 2 3444445555666666666655555554444333210 000 000 1111111 111111222344
Q ss_pred chh-HHHHHHHHHHHHHHHHHhhheeeeeecCC-Ccccccc-ccccccchHhHHHHHHHHHHhHhccc-cchhhhhhhCC
Q 020087 183 FNA-IAGVSLAAAVMSLSYSTIAWSASVRKGVQ-PDVAYGY-KAKTAAGTVFNFFSALGDVAFAYAGH-NVVLEIQATIP 258 (331)
Q Consensus 183 ~~~-l~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~faf~~~-~~~~~i~~~m~ 258 (331)
+++ ..+.+.+-....+.+.++.+++.+..... .+.+.-. ++.....++.....|+|-..|+.+-- ..+.+..+.+
T Consensus 163 V~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL- 241 (439)
T COG0733 163 VKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYL- 241 (439)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 444 66677776666666666666666554221 1111111 11111223566778899888888764 6666666767
Q ss_pred CCCCCCCCccchhHHHHHHHHHHHHHHHHH
Q 020087 259 STPEKPSKGPMWRGVVVAYIVVALCYFPVA 288 (331)
Q Consensus 259 ~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~ 288 (331)
+|+ .++.+........-+.+=++.|
T Consensus 242 ---~k~--~~l~~sa~~v~~~n~~~s~lAG 266 (439)
T COG0733 242 ---SKK--SDLVSSALSIVLLNTLISLLAG 266 (439)
T ss_pred ---Ccc--cchhhhHHHHHHHHHHHHHHHH
Confidence 333 3444555554444444444433
No 96
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=84.86 E-value=5.1 Score=37.63 Aligned_cols=66 Identities=17% Similarity=0.282 Sum_probs=52.1
Q ss_pred cHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCC
Q 020087 105 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHL 180 (331)
Q Consensus 105 ~y~~l~~~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~ 180 (331)
-.....++.+|+ +|+.+..+.+.+.|+-++++....+++++++..+ .+.+.|.++..++.++++..
T Consensus 266 il~~~~~~~~G~-~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~---------isY~~~v~i~~l~S~~lSn~ 331 (439)
T PRK15433 266 ILHAYVQHTFGG-GGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP---------LSYRTLVFILGGFSMVVSNL 331 (439)
T ss_pred HHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---------CcHHHHHHHHHHHHHHHHHh
Confidence 345567889997 6779999999999999999999999999888764 24467777777777776654
No 97
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=81.25 E-value=53 Score=31.56 Aligned_cols=95 Identities=18% Similarity=0.204 Sum_probs=54.1
Q ss_pred HHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHH--HHHHHHHHhcCCCCc
Q 020087 106 YHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIM--IFASVHFVLSHLPNF 183 (331)
Q Consensus 106 y~~l~~~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~--v~~~~~~pl~~~~~~ 183 (331)
++-++++.-|+ .| .++|...++...+....-+-.....+..-++...+-+ .+...+.+ +...+++..+....+
T Consensus 164 ~pl~g~~~~g~-~g-~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~---~~~~~~~~ii~~~~~i~~~S~~~Gl 238 (485)
T PF02028_consen 164 YPLLGDRINGP-LG-KIIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIP---NTFGLQIIIIIVITVIFTISAVSGL 238 (485)
T ss_dssp HHHHHHHHHSH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS---STHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhhcCCcccCc-ch-hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCC---CchHHHHHHHHHHHHHHHHHHHHhH
Confidence 44445555453 56 8888888887777777666666666666666665321 12223332 233334445555566
Q ss_pred -hhHHHHHHHHHHHHHHHHHhhh
Q 020087 184 -NAIAGVSLAAAVMSLSYSTIAW 205 (331)
Q Consensus 184 -~~l~~~s~~~~~~~~~~~~~~~ 205 (331)
|+++++|.+...+.+.+.+.++
T Consensus 239 ~kGIk~LS~~n~~l~~~ll~~vl 261 (485)
T PF02028_consen 239 DKGIKRLSNINVYLAFALLLFVL 261 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477777777665555444433
No 98
>PRK09950 putative transporter; Provisional
Probab=80.32 E-value=57 Score=31.50 Aligned_cols=164 Identities=16% Similarity=0.183 Sum_probs=85.9
Q ss_pred CCCcHHHHHHHHHhhhhhhhhchHH----HH-HHh--hC----hh----HHHHHHHHHHHHHHHHHHHHHHhhh----hc
Q 020087 38 RNAKWWYSAFHNVTAMVGAGVLSLP----YA-MAQ--LG----WG----PGVAILILSWIITLYTLWQMVEMHE----MV 98 (331)
Q Consensus 38 ~~~s~~~~~~~l~~~~iG~GiL~lP----~~-~~~--~G----~~----~g~i~~i~~~~~~~~t~~~l~~~~~----~~ 98 (331)
++-|.++=..++..+-+|+|++.-. .. +.+ .| -. .+...-.+=+-+..|+.+.+.-... ++
T Consensus 82 PefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~e~~s~~A~~~A~~~t~fHWG~~aWaiY~l~~l~iaY~~~~ 161 (506)
T PRK09950 82 PEYSTLSWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLNIAPRSPKALEYSVSYSFFHWGISAWATYALASLIMAYHFHV 161 (506)
T ss_pred CCccchhHHHHHHHHhhhhHHHHHhhHhHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 3444555566778889999987543 21 111 11 10 1222222223334444444333221 12
Q ss_pred CCcccccHHHHHHHHhCcc----ccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHH
Q 020087 99 PGKRFDRYHELGQHAFGEK----LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVH 174 (331)
Q Consensus 99 ~~~~~~~y~~l~~~~~G~~----~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~ 174 (331)
.+++..+..+..+-.+|++ .| .++|+..++...+....-+=.....+..-+....+-+.. ......+++....+
T Consensus 162 rk~~pl~iss~~~pllG~~~~g~~G-~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~-~~~~~~ii~vi~~i 239 (506)
T PRK09950 162 RKNKGLSLSGIIAAITGVKPQGPWG-RLVDLMFLIATVGALTISLVVTAATFTRGLSALTGLPNN-FTVQAFVILLSGVI 239 (506)
T ss_pred hcCCCCchHHhhHhhcCCCCCCcch-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHHH
Confidence 2333457888888888753 45 788888877777666666666666666666665532111 11122223333345
Q ss_pred HHhcCCCCc-hhHHHHHHHHHHHHHHHHHh
Q 020087 175 FVLSHLPNF-NAIAGVSLAAAVMSLSYSTI 203 (331)
Q Consensus 175 ~pl~~~~~~-~~l~~~s~~~~~~~~~~~~~ 203 (331)
+.++....+ |+++++|.+.....+.+.+.
T Consensus 240 f~~S~~~Gl~kGIk~LS~~N~~la~~ll~~ 269 (506)
T PRK09950 240 FCLSSYIGIDNGLQRLSKMVGWGAFLFALL 269 (506)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 555655666 56777777776655554433
No 99
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=79.13 E-value=33 Score=32.99 Aligned_cols=155 Identities=17% Similarity=0.142 Sum_probs=80.7
Q ss_pred cHHHHHHHHHhhhhhhhhchHHH----H-HHhh--Chh--------HHHHHHHHHHHHHHHHHHHHHHhhhhc---CCcc
Q 020087 41 KWWYSAFHNVTAMVGAGVLSLPY----A-MAQL--GWG--------PGVAILILSWIITLYTLWQMVEMHEMV---PGKR 102 (331)
Q Consensus 41 s~~~~~~~l~~~~iG~GiL~lP~----~-~~~~--G~~--------~g~i~~i~~~~~~~~t~~~l~~~~~~~---~~~~ 102 (331)
|.++=..++..+-+|+|++.-+- . +.+- |.- .+...-.+=+.+..++.+.+...+..+ .+.+
T Consensus 89 s~~SW~aMLFaAGmGigl~fwgvaEp~~~y~~pp~~~~~~t~~A~~~Al~~tffHWG~~~WaiY~lvalalaYf~~rk~~ 168 (537)
T COG1292 89 STLSWLAMLFAAGMGIGLLFWGVAEPVYYYATPPPGAEPNTTEAAEQALAYTFFHWGLHAWAIYALVALALAYFHYRKGL 168 (537)
T ss_pred chhHHHHHHHHcccCceeeEeechhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHhheeeEecCC
Confidence 44555567889999999875441 1 1111 111 233333444445555555554443221 1111
Q ss_pred c-----ccHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHH--HHH
Q 020087 103 F-----DRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFAS--VHF 175 (331)
Q Consensus 103 ~-----~~y~~l~~~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~--~~~ 175 (331)
. .-|+=++++.-|+ +| ..+|++-++........-+-+.+..+..-++...+-+ .+...+.++.++ +++
T Consensus 169 pl~lss~l~Pllg~~~~G~-~G-~~IDi~aiiaTl~GiATsLG~ga~qi~~Gl~~l~gip---~~~~~q~~iI~vi~~~~ 243 (537)
T COG1292 169 PLLLSSALYPLLGERIKGP-IG-HAVDILAIIATLFGIATSLGLGALQLTAGLSYLFGIP---NSFAVQAIIIAVITALF 243 (537)
T ss_pred CchhhhhhhhhhcccccCc-cc-hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHH
Confidence 1 1234445554454 67 8999998888887777777777777777777766421 112223222222 233
Q ss_pred HhcCCCCc-hhHHHHHHHHHHHHHHH
Q 020087 176 VLSHLPNF-NAIAGVSLAAAVMSLSY 200 (331)
Q Consensus 176 pl~~~~~~-~~l~~~s~~~~~~~~~~ 200 (331)
..+-...+ |.+++.|.+-..+....
T Consensus 244 ~~S~~sGv~KGIr~LS~~n~~la~~l 269 (537)
T COG1292 244 TISVWSGLDKGIRVLSNINMVLAFLL 269 (537)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34433444 55556665555544443
No 100
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=76.65 E-value=63 Score=29.80 Aligned_cols=149 Identities=15% Similarity=0.167 Sum_probs=86.8
Q ss_pred cCCCcHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHH----hhhhcCCcccccHHHHH
Q 020087 37 SRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIIT-LYTLWQMVE----MHEMVPGKRFDRYHELG 110 (331)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~g~i~~i~~~~~~-~~t~~~l~~----~~~~~~~~~~~~y~~l~ 110 (331)
.|+.+.+--.+....+=+|+. ..+=|.+-...|+ |++++..+=+.+ +.+...+.+ -+++.+ ..+..|+-
T Consensus 38 nRsmgg~VlAmt~~aTYisaSSFigGpgaayk~Gl--gwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~n---AltI~D~l 112 (473)
T COG4145 38 NRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGL--GWVLLAMIQVPTVWLALGVLGKKFAILAREYN---ALTINDLL 112 (473)
T ss_pred cCcccceehhhHHHHHHHHHhhhcCCCcHHHHhch--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhC---CeeHHHHH
Confidence 455666666666666666664 4466777666664 444443332222 233333333 222222 34788888
Q ss_pred HHHhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHH
Q 020087 111 QHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVS 190 (331)
Q Consensus 111 ~~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s 190 (331)
++-+..+.-.|+..+...+...+...+..+..++.++.... .+...-.++++..+..-...-.++.....-
T Consensus 113 ~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~g---------idY~tgL~ifa~~V~iYt~fGGFRAvvltD 183 (473)
T COG4145 113 FARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALG---------IDYTTGLLIFAVSVAIYTAFGGFRAVVLTD 183 (473)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHC---------CCchhhHHHHHHHHHHHHhhcceeeeehHH
Confidence 88875445557778888888888888888888877766643 233455556666666656666666555544
Q ss_pred HHHHHHHHH
Q 020087 191 LAAAVMSLS 199 (331)
Q Consensus 191 ~~~~~~~~~ 199 (331)
.+.-+.++.
T Consensus 184 ~IQG~vmli 192 (473)
T COG4145 184 TIQGLVMLI 192 (473)
T ss_pred HHHHHHHHH
Confidence 444443333
No 101
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=73.53 E-value=79 Score=29.44 Aligned_cols=96 Identities=14% Similarity=0.085 Sum_probs=47.4
Q ss_pred HHHHhhhhhhhhchHHHHHHhhChh--HHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCccccchhhH
Q 020087 47 FHNVTAMVGAGVLSLPYAMAQLGWG--PGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVV 124 (331)
Q Consensus 47 ~~l~~~~iG~GiL~lP~~~~~~G~~--~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~ 124 (331)
+.+...-+|.|-+. .+ .++|-- ...+..++.+.+..+..+.+.-..-..++ ++..|+.++-++| +.++...
T Consensus 11 ~lva~a~idPG~i~-t~--~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRlg~vTg---~~l~~~~r~~~~~-~~~~~~~ 83 (390)
T TIGR01197 11 FLMSIAYIDPGNYS-TD--LQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVVTG---LDLAEVCREHYPK-VPRITLW 83 (390)
T ss_pred HHHHHHhcCchHHH-HH--HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHheeecC---CCHHHHHHHHCCC-chHHHHH
Confidence 34444556777665 22 333332 23333344444444433333332222334 3799999999987 4445555
Q ss_pred HHHHHHHHHHHHHHHHHhccchHHH
Q 020087 125 PQQLIVEVGVCIVYMVTGGKSLHKV 149 (331)
Q Consensus 125 ~~~~i~~~g~~~~y~i~~~~~l~~l 149 (331)
+...+...+.........+--++.+
T Consensus 84 ~~~~l~ii~~~~~e~~G~a~al~ll 108 (390)
T TIGR01197 84 ILAELAIIATDMAEVIGTAIALNLL 108 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455444444444444433
No 102
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=72.50 E-value=23 Score=26.58 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=15.1
Q ss_pred CcHHHHHHHHHhhhhhhhhchHHHHH
Q 020087 40 AKWWYSAFHNVTAMVGAGVLSLPYAM 65 (331)
Q Consensus 40 ~s~~~~~~~l~~~~iG~GiL~lP~~~ 65 (331)
..|..-+..+.-..+|+..+.+...+
T Consensus 39 ~pwK~I~la~~Lli~G~~li~~g~l~ 64 (115)
T PF05915_consen 39 IPWKSIALAVFLLIFGTVLIIIGLLL 64 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555666666666666543
No 103
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=72.22 E-value=4.5 Score=39.29 Aligned_cols=240 Identities=13% Similarity=0.074 Sum_probs=114.0
Q ss_pred ccCCCcHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCcccccHHHHHHHH
Q 020087 36 SSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHE-MVPGKRFDRYHELGQHA 113 (331)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~-~~~~~~~~~y~~l~~~~ 113 (331)
..|++.++.-.+.+..+.+|++ ++.+|....+.|.......+. .......+..... ..-+.+..+-.|..++-
T Consensus 43 ~gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~-----~l~~~~~~~~~f~Pvf~~~~v~~~~eYl~~R 117 (585)
T KOG2349|consen 43 GGRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEWN-----ALLSVLLLGWIFIPVFYRLGVTTMYEYLEKR 117 (585)
T ss_pred cCCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHHH-----HHHHHHhhheEEEEEEEecCeeehhHHHHHH
Confidence 4567777777777888888876 779998888777542222221 1112222222110 01122244666777889
Q ss_pred hCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 020087 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (331)
Q Consensus 114 ~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~ 193 (331)
||++ .|....+...+..+ +-.-+--+...+.-+..- .++......+..++...-...-.++..-|.-.+.
T Consensus 118 f~~~-~r~l~~l~f~l~~~-----~~l~v~~y~pal~~~qvt----g~~~~l~~~~~~~ic~~YT~~GGlkaVi~TDv~Q 187 (585)
T KOG2349|consen 118 FGGR-VRYLATLSFILMIF-----LYLPVDMYAPALAINQVT----GINLYLIVVILGLICVFYTALGGLKAVIWTDVVQ 187 (585)
T ss_pred hccc-chhhHHHHHHHHHH-----hheeeeEeehHHHHHHHh----ccCceeehHHHHHHHHHHHHhcCeeEEEEhhHHH
Confidence 9875 32333332222211 111222222333222111 1222222222333333334445666666666777
Q ss_pred HHHHHHHHHhhheeeeee-cCC--------C-----cc-ccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCC
Q 020087 194 AVMSLSYSTIAWSASVRK-GVQ--------P-----DV-AYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIP 258 (331)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~-~~~--------~-----~~-~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~ 258 (331)
....+..+..+.+....+ +.. . .. +...++......|.-++.....-...|+.+.+...=+-.+
T Consensus 188 ~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~VQR~lsl- 266 (585)
T KOG2349|consen 188 TVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLIVQRYLSL- 266 (585)
T ss_pred HHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHHHhHHhcc-
Confidence 666655555444443222 110 0 01 1222222333445544444555555666666665544444
Q ss_pred CCCCCCCCccchhHHHHHHHHHHHHHH---HHHHHHhhccC
Q 020087 259 STPEKPSKGPMWRGVVVAYIVVALCYF---PVALIGYWMFG 296 (331)
Q Consensus 259 ~~~~~p~~~~~~~~~~~~~~~~~~~y~---~~~~~gy~~fg 296 (331)
|+.++.++.........++... ..|++.|..|.
T Consensus 267 -----~slk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~ 302 (585)
T KOG2349|consen 267 -----PSLKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYT 302 (585)
T ss_pred -----ccHHHhhhhhhhhhhHHHHHHHhhcccceeEeeecc
Confidence 4444555777665554444444 44566666664
No 104
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=69.78 E-value=1.1e+02 Score=29.63 Aligned_cols=105 Identities=12% Similarity=0.184 Sum_probs=50.2
Q ss_pred HhcCCCCchhHHHHHHHHHHHHHHHHHhhheeeeee-cCCCccccccc-cccccchHhHHHHHHHHHHhHhcc-ccchhh
Q 020087 176 VLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRK-GVQPDVAYGYK-AKTAAGTVFNFFSALGDVAFAYAG-HNVVLE 252 (331)
Q Consensus 176 pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~faf~~-~~~~~~ 252 (331)
-++..|.++..+.+.......-+..+++++++.+.. +...+.+.-.. +.....+..-...|++-.+|+.+. ...+..
T Consensus 192 ~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~it 271 (523)
T PF00209_consen 192 FFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLDPKVWIAALGQVFFSLSIGFGIMIT 271 (523)
T ss_dssp TTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTSHHHHHHHHHHHHHHTTTTSSHHHH
T ss_pred HHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhHHHHHHHHHHHHhhccCCCcceEEE
Confidence 345667888877776665543333333333333221 11111111111 111111223346789999999986 466666
Q ss_pred hhhhCCCCCCCCCCccchhHHHHHHHHHHHHHHH
Q 020087 253 IQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFP 286 (331)
Q Consensus 253 i~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~y~~ 286 (331)
..+.+ + ++.++.|........-..+.++
T Consensus 272 ~~Sy~----~--~~~n~~~~a~~v~~~~~~~sll 299 (523)
T PF00209_consen 272 YGSYN----K--FKNNIFRDALIVAFINTLVSLL 299 (523)
T ss_dssp HHTTS-------TTS-SHHHHHHHHHHHHHHHHT
T ss_pred EcCcC----C--CCccccccceEEEcCchhhhHh
Confidence 66655 3 3334556666555555555443
No 105
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=68.72 E-value=1.1e+02 Score=28.99 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=29.9
Q ss_pred cccCCCcHHHHHHHHHhhhhhhh-hchHHHHHHhhCh
Q 020087 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGW 70 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~ 70 (331)
++++..|.+|+....+.+.+|+| +-...-+.+-.|-
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGP 94 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGP 94 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCC
Confidence 35667889999999999999999 5588888887763
No 106
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=67.93 E-value=1.1e+02 Score=29.02 Aligned_cols=159 Identities=14% Similarity=0.099 Sum_probs=77.4
Q ss_pred CcHHHHHHHHHhhhhhhhhchHH----HH-HHh--hChh---------HHHHHHHHHHHHHHHHHHHHHHhh---hhcCC
Q 020087 40 AKWWYSAFHNVTAMVGAGVLSLP----YA-MAQ--LGWG---------PGVAILILSWIITLYTLWQMVEMH---EMVPG 100 (331)
Q Consensus 40 ~s~~~~~~~l~~~~iG~GiL~lP----~~-~~~--~G~~---------~g~i~~i~~~~~~~~t~~~l~~~~---~~~~~ 100 (331)
-|.++=..++..+-+|+|++.-. .. +.+ .|.- .+...-.+=+-+..|..+.+.-.. .++.+
T Consensus 37 fS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~~~~s~~~A~~~A~~~~~fHWG~~aWaiY~l~ala~aY~~~rk 116 (453)
T TIGR00842 37 FSTLSWLAMLFAAGMGIGLMFWGVAEPLTYYLTPPFGAGPTSTTQAQEQALAYTLFHWGIHAWAIYALVGLALAYFHVRK 116 (453)
T ss_pred CcchHHHHHHHHHhhhhhhhhhHhhhHHHHhCCCCCCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhheec
Confidence 34455555777888999987543 22 211 1110 122222222334444444444332 12233
Q ss_pred cccccHHHHHHHHhCcc----ccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHH--HHHHH
Q 020087 101 KRFDRYHELGQHAFGEK----LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMI--FASVH 174 (331)
Q Consensus 101 ~~~~~y~~l~~~~~G~~----~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v--~~~~~ 174 (331)
++..+..+..+-.+|++ .| .++|+..++...+....-+-.....+..-+....+-+. +......+ ....+
T Consensus 117 ~~~~~iss~~~pllG~~~~g~~g-~~ID~l~v~ati~G~atsLGlg~~qi~~gl~~l~gi~~---~~~~~~~ii~~i~~~ 192 (453)
T TIGR00842 117 GLPLRLSSALVPLLGERVNGPIG-KAIDIMALVATLFGVATSLGLGAPQINAGLSALFGIPD---SFWLQALIILCVTAL 192 (453)
T ss_pred CCCCchhhhhhcccCCcccCccH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHHHH
Confidence 33456777777777753 34 67777777766655555555555555555555543111 11222222 22233
Q ss_pred HHhcCCCCc-hhHHHHHHHHHHHHHHHHH
Q 020087 175 FVLSHLPNF-NAIAGVSLAAAVMSLSYST 202 (331)
Q Consensus 175 ~pl~~~~~~-~~l~~~s~~~~~~~~~~~~ 202 (331)
+..+....+ |.++++|.+.....+.+..
T Consensus 193 f~~S~~~Gl~kGIk~LS~~n~~l~~~ll~ 221 (453)
T TIGR00842 193 ACISVASGVGKGIKILSNINMALAFLLLL 221 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444 4555666655554444433
No 107
>PRK09928 choline transport protein BetT; Provisional
Probab=66.44 E-value=38 Score=33.80 Aligned_cols=163 Identities=12% Similarity=0.059 Sum_probs=80.2
Q ss_pred CCcHHHHHHHHHhhhhhhhhchHH----HH-HHh--hC---h----hHHHHHHHHHHHHHHHHHHHHHHhhhh---cCCc
Q 020087 39 NAKWWYSAFHNVTAMVGAGVLSLP----YA-MAQ--LG---W----GPGVAILILSWIITLYTLWQMVEMHEM---VPGK 101 (331)
Q Consensus 39 ~~s~~~~~~~l~~~~iG~GiL~lP----~~-~~~--~G---~----~~g~i~~i~~~~~~~~t~~~l~~~~~~---~~~~ 101 (331)
.-|.++=..+++.+-+|+|++.-. .. +.+ .| - -.+...-.+=+.+..|+.+.++-.... +..+
T Consensus 92 efS~~sW~aMLFaAGmGigLmfwgvaEP~~h~~~PP~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalvglalAYf~yr~~ 171 (679)
T PRK09928 92 EFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSYRYN 171 (679)
T ss_pred CCCcchHHHHHHHHhhhhhheeehHHhHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCC
Confidence 344455556788999999987543 11 111 11 1 012222233344455555554443221 1222
Q ss_pred ccccHHHHHHHHhCcc----ccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHh
Q 020087 102 RFDRYHELGQHAFGEK----LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVL 177 (331)
Q Consensus 102 ~~~~y~~l~~~~~G~~----~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl 177 (331)
+..+..+..+-++|++ +| .++|++.++...+....-+=+....+..-+....+-+.. ......+++....++.+
T Consensus 172 ~pl~issal~pllG~ri~G~~G-~~IDi~av~~tvfGiaTSLGlGv~qi~~GL~~lfGi~~~-~~~q~~ii~vi~~i~~~ 249 (679)
T PRK09928 172 LPLTIRSALYPIFGKRINGPIG-HSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIPES-LAAQAALIALSVIIATI 249 (679)
T ss_pred CCCchhHhhhhhcCCCCCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc-cHHHHHHHHHHHHHHHH
Confidence 2345666666666643 56 778887777666555545544455555555555431111 11112222333334445
Q ss_pred cCCCCc-hhHHHHHHHHHHHHHHHHHh
Q 020087 178 SHLPNF-NAIAGVSLAAAVMSLSYSTI 203 (331)
Q Consensus 178 ~~~~~~-~~l~~~s~~~~~~~~~~~~~ 203 (331)
+....+ |+++++|.+-..+.+.+++.
T Consensus 250 S~~sGl~KGIk~LS~lN~~La~~Lllf 276 (679)
T PRK09928 250 SVTSGVNKGIRVLSELNVLLALGLILF 276 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 555555 55666776666655544433
No 108
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=63.87 E-value=1.4e+02 Score=28.77 Aligned_cols=162 Identities=15% Similarity=0.072 Sum_probs=79.7
Q ss_pred CCcHHHHHHHHHhhhhhhhhchHH----HHHH-h--hCh----h----HHHHHHHHHHHHHHHHHHHHHHhhh---hcCC
Q 020087 39 NAKWWYSAFHNVTAMVGAGVLSLP----YAMA-Q--LGW----G----PGVAILILSWIITLYTLWQMVEMHE---MVPG 100 (331)
Q Consensus 39 ~~s~~~~~~~l~~~~iG~GiL~lP----~~~~-~--~G~----~----~g~i~~i~~~~~~~~t~~~l~~~~~---~~~~ 100 (331)
+-|.++=..++..+-+|+|++.-. .... . .|. . .+...-.+=+-+..|..+.+.-... .+..
T Consensus 85 efs~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~PP~g~e~~s~~A~~~A~~~~~fHWG~~aWaiY~~~~la~ay~~y~~ 164 (504)
T PRK03356 85 EFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFGYFFFVR 164 (504)
T ss_pred CccchHHHHHHHHHhhhhhhhhhhhhhHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHhc
Confidence 344455556777888999987542 2211 1 121 0 1122222223334444444433221 1122
Q ss_pred ccc-ccHHHHHHHHhCcc-----ccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHH
Q 020087 101 KRF-DRYHELGQHAFGEK-----LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVH 174 (331)
Q Consensus 101 ~~~-~~y~~l~~~~~G~~-----~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~ 174 (331)
++. .+..+..+-.+|++ .| .++|+..++...+....-+=.....+..-++...+-+.. ......+++...++
T Consensus 165 ~~p~l~iss~~~pllG~~~~~g~~G-~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~-~~~~~~ii~~i~~i 242 (504)
T PRK03356 165 KMDVIRPSSTLVPLVGEKHAKGLFG-TIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHT-LQLDAIIITCWIIL 242 (504)
T ss_pred CCCcccHHHHHHHHcCCCcccCchH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHHH
Confidence 222 35777777888842 35 778887777776666656655666666666665532111 11112222233334
Q ss_pred HHhcCCCCc-hhHHHHHHHHHHHHHHHHH
Q 020087 175 FVLSHLPNF-NAIAGVSLAAAVMSLSYST 202 (331)
Q Consensus 175 ~pl~~~~~~-~~l~~~s~~~~~~~~~~~~ 202 (331)
+..+....+ |+++++|.+-....+.+.+
T Consensus 243 f~~S~~~Gl~kGIk~LS~~N~~la~~ll~ 271 (504)
T PRK03356 243 NAICVACGLQKGVRIASDVRSYLSFLMLG 271 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444544444 4466666666655444433
No 109
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=56.07 E-value=2.1e+02 Score=28.17 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=48.4
Q ss_pred cHHHHHHHHHhhhhhhhhc-hHHHH-HHhhCh---hHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhC
Q 020087 41 KWWYSAFHNVTAMVGAGVL-SLPYA-MAQLGW---GPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFG 115 (331)
Q Consensus 41 s~~~~~~~l~~~~iG~GiL-~lP~~-~~~~G~---~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G 115 (331)
+..+.....++..++.|-. -.||- +.+.|+ ++-.+.+++.|+-..|-=..+.+.++ .+.. .-+..++-..-|
T Consensus 83 ~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r-~g~~--gvw~ri~P~l~G 159 (629)
T KOG3659|consen 83 SKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHR-QGCI--GVWRRIAPALKG 159 (629)
T ss_pred hHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhc-ccch--hHHHHhCHHhcC
Confidence 4477778888888888855 78887 455555 34556666666666655555555443 2221 244455555545
Q ss_pred ccccchhhHHHHHHH
Q 020087 116 EKLGLYIVVPQQLIV 130 (331)
Q Consensus 116 ~~~g~~~~~~~~~i~ 130 (331)
.|.-.+.++.++.
T Consensus 160 --igy~i~~i~~~~~ 172 (629)
T KOG3659|consen 160 --IGYAICLIAFFVG 172 (629)
T ss_pred --CchhhhHHHHHHH
Confidence 4434444444443
No 110
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=53.75 E-value=2.2e+02 Score=27.70 Aligned_cols=47 Identities=11% Similarity=0.057 Sum_probs=35.3
Q ss_pred cHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q 020087 105 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHEL 152 (331)
Q Consensus 105 ~y~~l~~~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~ 152 (331)
-..++-....|||.. .++...+++..+...++-+...++..-..-++
T Consensus 326 p~~~i~~~~lg~k~~-v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRD 372 (550)
T KOG1289|consen 326 PIVQIYYQALGKKGA-VFLLSLIIIALFFMGISSLTASSRLVYAFARD 372 (550)
T ss_pred hHHHHHHHhcCCCce-EehhHHHHHHHHHhhHHHHHHHHHHHhhhhcc
Confidence 577888889999766 77777777888888887777777766655443
No 111
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=51.94 E-value=2.6e+02 Score=27.96 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=33.5
Q ss_pred cHHHHHHHHHhhhhhhhhc-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHH
Q 020087 41 KWWYSAFHNVTAMVGAGVL-SLPYAMAQLGWGPGVAILILSWIITLYTLWQ 90 (331)
Q Consensus 41 s~~~~~~~l~~~~iG~GiL-~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~ 90 (331)
+..+-.+..++..+|-|-. =.|+...+-|...-++-.+++.++.......
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~ 89 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFF 89 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHH
Confidence 7789999999999999965 5999866666533444444444444444333
No 112
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=50.86 E-value=18 Score=21.80 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 020087 272 GVVVAYIVVALCYFPVALIGYWMFGNKV 299 (331)
Q Consensus 272 ~~~~~~~~~~~~y~~~~~~gy~~fg~~~ 299 (331)
+..++..+.+++-.+.|..-|.+||+..
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 3456666777777778888899998644
No 113
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=50.06 E-value=21 Score=21.79 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 020087 271 RGVVVAYIVVALCYFPVALIGYWMFGNKV 299 (331)
Q Consensus 271 ~~~~~~~~~~~~~y~~~~~~gy~~fg~~~ 299 (331)
.+..++..+.+++.-+.|..-|.+||+-.
T Consensus 6 ~A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 6 PALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 55667777777777788888888898743
No 114
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=48.41 E-value=59 Score=31.02 Aligned_cols=166 Identities=14% Similarity=0.156 Sum_probs=86.3
Q ss_pred CccccchhhHHHHHHHHHHHHHHHH-HHhccchHHHHHHHhcCCCCCcc-chhHHHHHHHHHHHhcCCCCc-hhHHHHHH
Q 020087 115 GEKLGLYIVVPQQLIVEVGVCIVYM-VTGGKSLHKVHELLCKEPCKEIK-LSYFIMIFASVHFVLSHLPNF-NAIAGVSL 191 (331)
Q Consensus 115 G~~~g~~~~~~~~~i~~~g~~~~y~-i~~~~~l~~l~~~~~~~~~~~~~-~~~~~~v~~~~~~pl~~~~~~-~~l~~~s~ 191 (331)
|.+.|.+++.+...+.+.+..++-- +..+.-+..++|.+.+ .+ ..+...+.+.++.|--++++= +.+..++.
T Consensus 339 G~RAgvFfi~~~f~laql~~NISan~vaagnDl~~L~Pkyin-----IrRG~~~~a~ia~a~~PWnll~SSs~F~t~Lss 413 (572)
T KOG2466|consen 339 GARAGVFFIGFGFALAQLGTNISANSVAAGNDLSALLPKYIN-----IRRGALICAIIAWAICPWNLLSSSSKFLTALSS 413 (572)
T ss_pred ccchhhhHHHHHHHHHHHhcchhccccccchhhHhhCcceEE-----ecccHHHHHHHHHHhCchHHhccccHHHHHHHH
Confidence 3346778888888888887665444 5666677788877652 22 234555667777777776543 33444444
Q ss_pred HHHHHHHHHHHhhhee-e-eeecCCCcccc--cc-ccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCC
Q 020087 192 AAAVMSLSYSTIAWSA-S-VRKGVQPDVAY--GY-KAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSK 266 (331)
Q Consensus 192 ~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~--~~-~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~ 266 (331)
.++++.=+ ..+++.. . +.++. -..+. .. +...... ..+ .+-=.++.|-.++.+++|-+..|.-++.+.|+-
T Consensus 414 ysvfLspi-agViiaDyF~iRk~~-~~i~~~y~~~~g~yY~~-~~G-~NwRA~vA~vcG~~P~lpG~a~~V~~~~~v~~G 489 (572)
T KOG2466|consen 414 YSVFLSPI-AGVIIADYFLIRKGY-YKITHLYSLSKGSYYYF-KKG-INWRAFVAYVCGMAPNLPGFAGSVGADIKVPDG 489 (572)
T ss_pred HHHHHhhc-cceEeehhheeecce-eeeeeeeecCCCceeee-ecC-ccHHHHHHHHhccccCCcchhhhcCcccccccc
Confidence 44442211 1111111 1 11221 11111 11 1111111 111 122234557778889999999998333333332
Q ss_pred cc--chhHHHHHHHHHHHHHHHHHH
Q 020087 267 GP--MWRGVVVAYIVVALCYFPVAL 289 (331)
Q Consensus 267 ~~--~~~~~~~~~~~~~~~y~~~~~ 289 (331)
.- .......++.+.++.|.....
T Consensus 490 ~~~~yy~~yf~sf~isf~vYwiLc~ 514 (572)
T KOG2466|consen 490 AVKLYYLDYFFSFLISFLVYWILCL 514 (572)
T ss_pred eEEEEechHHHHHHHHHHHHHHHHh
Confidence 11 112345788888888887654
No 115
>PLN02680 carbon-monoxide oxygenase
Probab=46.81 E-value=1.4e+02 Score=25.47 Aligned_cols=87 Identities=16% Similarity=0.194 Sum_probs=53.4
Q ss_pred chHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchhhhhCC
Q 020087 228 GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSL 307 (331)
Q Consensus 228 ~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg~~~~~~il~~~ 307 (331)
.+|..+....|.++ ..++.... ++.. + .+++.+|.+.+..-...++..++|+.....+-++. .+.+-+
T Consensus 47 Fn~HPlLM~~Gfi~--l~geAIL~--yr~~----~--~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~--~~~nfy 114 (232)
T PLN02680 47 FNVHPVLMVIGLVL--LNGEAMLA--YKTV----P--GTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEK--GIDNFY 114 (232)
T ss_pred EechHHHHHHHHHH--HHHHHHhc--cccc----c--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--Cccccc
Confidence 45666666666554 22232222 3434 2 23346688999999999999999997766655433 443444
Q ss_pred CCChHHHHHHHHHHHHHhh
Q 020087 308 EKPTWLIVMANFFVVVHVI 326 (331)
Q Consensus 308 ~~~~~~~~~~~~~~~i~v~ 326 (331)
+-.+|+-..+-+++.++..
T Consensus 115 SlHSWlGl~t~iL~~lQ~~ 133 (232)
T PLN02680 115 SLHSWLGLACLFLFSLQWA 133 (232)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4457887777777766543
No 116
>CHL00020 psbN photosystem II protein N
Probab=46.45 E-value=18 Score=21.75 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 020087 272 GVVVAYIVVALCYFPVALIGYWMFGNKV 299 (331)
Q Consensus 272 ~~~~~~~~~~~~y~~~~~~gy~~fg~~~ 299 (331)
+..++..+.+++.-+.|..-|.+||+-.
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGppS 31 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQPS 31 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCch
Confidence 4556677777777777888888888743
No 117
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=43.73 E-value=2.2e+02 Score=24.88 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=29.4
Q ss_pred HhHhccccchhhhhhhCCCCCCCCCCccchhHHHHH--HHHHHHHHHHHHH
Q 020087 241 AFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVA--YIVVALCYFPVAL 289 (331)
Q Consensus 241 ~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~--~~~~~~~y~~~~~ 289 (331)
.|..+.|.++..+-+|-|+ .||++--+.-...|+ +.+-++.+++.++
T Consensus 216 ~f~WgiQ~ViL~lPhEyK~--~~pk~ig~~Fg~iWGfGY~~yTi~~Ii~S~ 264 (267)
T PF07672_consen 216 FFLWGIQGVILNLPHEYKG--YNPKKIGIQFGLIWGFGYIFYTIYDIILSV 264 (267)
T ss_pred HHHHhhhHHHhcChhhhcC--CCcceehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999855 456554444444444 3344555555544
No 118
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=36.88 E-value=3.6e+02 Score=25.34 Aligned_cols=71 Identities=20% Similarity=0.203 Sum_probs=39.6
Q ss_pred cHHHHHHHHHhhhhhhhhchHHHHHH-hhC--hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCcc
Q 020087 41 KWWYSAFHNVTAMVGAGVLSLPYAMA-QLG--WGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEK 117 (331)
Q Consensus 41 s~~~~~~~l~~~~iG~GiL~lP~~~~-~~G--~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~ 117 (331)
..+..-+++..-..|+|-+-.|-..- ++| +-.+...+++.+ ...=++.-.+....+. ++.++.++. ||+
T Consensus 6 ~~~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTg----VglPlLgiIa~a~~g~---~~~~l~~~i-~~~ 77 (431)
T COG1114 6 DIIALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTG----VGLPLLGIIAVALYGG---GVESLATRI-GPW 77 (431)
T ss_pred hHHHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHH----hhHHHHHHHHhhccCC---CHHHHhhhc-cch
Confidence 34667778889999999998886533 223 223333333333 2333332222222232 688887776 665
Q ss_pred cc
Q 020087 118 LG 119 (331)
Q Consensus 118 ~g 119 (331)
.|
T Consensus 78 fg 79 (431)
T COG1114 78 FG 79 (431)
T ss_pred HH
Confidence 55
No 119
>PLN00150 potassium ion transporter family protein; Provisional
Probab=34.36 E-value=1.1e+02 Score=31.13 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=20.4
Q ss_pred HHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccchh
Q 020087 234 FSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWR 271 (331)
Q Consensus 234 ~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~ 271 (331)
+..+|.++.|..|.+. ++++| -+-.++.++.
T Consensus 287 ~~~LG~V~L~iTGaEA---LyADl----GHFg~~~Iri 317 (779)
T PLN00150 287 WESLGGIVLCMTGTEA---MFADL----GHFTVKSMQI 317 (779)
T ss_pred EEEecceeeeecchhh---hhccc----cCCCccceee
Confidence 3456777777777765 46788 7777766443
No 120
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=28.02 E-value=4.5e+02 Score=25.05 Aligned_cols=97 Identities=11% Similarity=-0.026 Sum_probs=53.4
Q ss_pred cchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchhhhhC
Q 020087 227 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLS 306 (331)
Q Consensus 227 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg~~~~~~il~~ 306 (331)
..+|..+.....+.+-...=|.=-....+|+.+++-++ +++.+| -..+-.+.+.+=-+++-..|-+|++|+==--+..
T Consensus 241 ~F~~~ail~m~~v~iV~~~E~~G~i~A~~~itg~~~~~-~~~l~r-g~~aDGlat~iag~fg~~p~TtfaqNiGvv~lT~ 318 (451)
T COG2233 241 AFDWGAILTMLPVAIVTIVEHTGDITATGEITGRDLDG-KPRLRR-GLLADGLATLIAGLFGGFPNTTFAQNIGVVALTG 318 (451)
T ss_pred eecHHHHHHHHHHHHHHHHHHhhhhhhHHhHhCCcCcc-Cccccc-ceeeccHHHHHHHhcCCCCCCchhhceeeeeecc
Confidence 45677777777776666655544444445554321222 122333 4456677777778888889999988764333333
Q ss_pred CCCChHHHHHHHHHHHHHh
Q 020087 307 LEKPTWLIVMANFFVVVHV 325 (331)
Q Consensus 307 ~~~~~~~~~~~~~~~~i~v 325 (331)
..+.......+.+++++.+
T Consensus 319 v~Sr~V~~~aavili~lgl 337 (451)
T COG2233 319 VYSRYVIAGAAVILILLGL 337 (451)
T ss_pred CChhHHHHHHHHHHHHHHh
Confidence 3323344444444444443
No 121
>TIGR00909 2A0306 amino acid transporter.
Probab=27.68 E-value=5e+02 Score=24.09 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=33.6
Q ss_pred cHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHH
Q 020087 105 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHE 151 (331)
Q Consensus 105 ~y~~l~~~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~ 151 (331)
...++.++..|+. +..++.+...+..+++..+.....++.+....+
T Consensus 265 ~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~ 310 (429)
T TIGR00909 265 PLSLVGYDLGQGI-GGLILTAGAVFSIASVMLAGIYGTSRVLFAMSR 310 (429)
T ss_pred HHHHHHHHhCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4556777777764 447778888888888888888888877776643
No 122
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=26.57 E-value=2.1e+02 Score=27.52 Aligned_cols=62 Identities=16% Similarity=0.288 Sum_probs=39.7
Q ss_pred HHHHHHHHhccchHHHHHHHhcCCCC---CccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 020087 134 VCIVYMVTGGKSLHKVHELLCKEPCK---EIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAV 195 (331)
Q Consensus 134 ~~~~y~i~~~~~l~~l~~~~~~~~~~---~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~~ 195 (331)
.+..+.+...|.....+.....+... .+.+..|.++..++-+.+...-.++.++-.+.++-+
T Consensus 401 l~~~f~vTs~DS~~~~la~~s~~~~~ep~~~~ri~W~~~~~~~a~~ll~~ggl~~lq~~~ii~~l 465 (485)
T PF02028_consen 401 LIFIFFVTSADSATYVLAMLSSKGDEEPPRWLRIFWGLIIGALAIVLLLIGGLDALQSASIIGGL 465 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTSSS-HHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44556677777777777766542222 245677888777776666655677777776666655
No 123
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=24.84 E-value=3.6e+02 Score=21.43 Aligned_cols=58 Identities=10% Similarity=0.220 Sum_probs=40.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchhhhhCCCCChHHHHHHHHHHHHHhh
Q 020087 267 GPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVI 326 (331)
Q Consensus 267 ~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~v~ 326 (331)
++.+|.+.+..-...++-.++|+.....+-++.+ ..+=++-.+|+-..+.+++.++-.
T Consensus 44 k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~--~~~fySlHSwlGl~t~~l~~lQ~~ 101 (153)
T cd08765 44 KLLMKLIHAGLHILAFILAIISVVAVFVFHNAKN--IPNMYSLHSWVGLAAVILYPLQLV 101 (153)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHccccC--CCccccHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999999999987777765543 322234457777777777766543
No 124
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=24.81 E-value=6e+02 Score=24.08 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=32.5
Q ss_pred cHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q 020087 105 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHEL 152 (331)
Q Consensus 105 ~y~~l~~~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~ 152 (331)
.+.++.+.++|.+.+..+......+..+++..+.+...++.+..+-++
T Consensus 290 p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ard 337 (482)
T TIGR00907 290 PIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSRD 337 (482)
T ss_pred hHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466777888887444355566666677777777777777776665443
No 125
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=24.73 E-value=1.9e+02 Score=18.32 Aligned_cols=29 Identities=10% Similarity=0.219 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 020087 271 RGVVVAYIVVALCYFPVALIGYWMFGNKV 299 (331)
Q Consensus 271 ~~~~~~~~~~~~~y~~~~~~gy~~fg~~~ 299 (331)
--+.+-.+++.++|++.|+.-+..+.+.+
T Consensus 23 ~fViik~vismimylilGi~L~yis~~~~ 51 (54)
T PF04835_consen 23 WFVIIKSVISMIMYLILGIALIYISSNDD 51 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcc
Confidence 33445567888999999998777665544
No 126
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=24.05 E-value=3.3e+02 Score=20.71 Aligned_cols=57 Identities=14% Similarity=0.205 Sum_probs=36.6
Q ss_pred hhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCc
Q 020087 53 MVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGE 116 (331)
Q Consensus 53 ~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~ 116 (331)
-+|.+++.... +.|-+.+.+..++.-....|+..+..+-+....+.+.-.|.|- +||
T Consensus 47 ~l~~~l~n~~~---~~g~~~a~vftivaif~~~ya~~lY~kRa~~Ir~R~~~pyDD~----~GP 103 (126)
T COG5264 47 GLGFALYNSGD---RLGMISAYVFTIVAIFCGFYALMLYLKRAVNIRQRSAGPYDDR----LGP 103 (126)
T ss_pred HHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc----cCC
Confidence 56677777666 6677777777777777778887777776543332222356543 676
No 127
>PRK09928 choline transport protein BetT; Provisional
Probab=23.30 E-value=7.9e+02 Score=24.90 Aligned_cols=63 Identities=8% Similarity=0.082 Sum_probs=43.5
Q ss_pred HHHHHHHHHhccchHHHHHHHhcC------CCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 020087 133 GVCIVYMVTGGKSLHKVHELLCKE------PCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAV 195 (331)
Q Consensus 133 g~~~~y~i~~~~~l~~l~~~~~~~------~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~~ 195 (331)
..+..+.+..+|.....+.....+ +-..+.+.+|.++..++-+.+...-.++.++..+.++-+
T Consensus 417 il~~iFfvTSaDS~s~Vla~lts~g~~~~~~pp~~~RifW~v~ig~la~~LL~~GGL~aLQt~sii~al 485 (679)
T PRK09928 417 ITGLLFYVTSADSGALVLGNFTSKLKDINSDAPNWLRVFWSVAIGLLTLGMLMTNGISALQNTTVIMGL 485 (679)
T ss_pred HHHHHHHHhcchHHHHHHHHHHcCCCCCCCCCCcceeeHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344557788888888887776631 223467888988888777666666677777776666555
No 128
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=23.28 E-value=5.3e+02 Score=28.51 Aligned_cols=28 Identities=14% Similarity=0.552 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 020087 271 RGVVVAYIVVALCYFPVALIGYWMFGNK 298 (331)
Q Consensus 271 ~~~~~~~~~~~~~y~~~~~~gy~~fg~~ 298 (331)
+.+.++.....++-.+++++||+.|.++
T Consensus 2420 rSIvlTa~LALILvYlFSIiGflffkdD 2447 (2706)
T KOG3533|consen 2420 RSIVLTALLALILVYLFSILGFLFFKDD 2447 (2706)
T ss_pred ceeHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4455555556666667999999999873
No 129
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=22.71 E-value=1.7e+02 Score=20.83 Aligned_cols=57 Identities=14% Similarity=0.307 Sum_probs=33.3
Q ss_pred HHHHHHhHhccccchhhhhhhCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 020087 236 ALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKV 299 (331)
Q Consensus 236 a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg~~~ 299 (331)
..|+.+.+..|.....+..+. ++|.+. .+|++.....+. .+-+++|++-|..||..-
T Consensus 16 i~GiiLL~~aCIfAfidfsK~-----~~~~~~-~wRalSii~FI~-giil~lG~~i~s~ygr~C 72 (92)
T PF05767_consen 16 IGGIILLIAACIFAFIDFSKN-----TKPTDY-TWRALSIICFIL-GIILTLGIVIFSMYGRYC 72 (92)
T ss_pred HHHHHHHHHHHHHHhhhhccC-----CCCchh-HHHHHHHHHHHH-HHHHHHHHHHHHHHhhhc
Confidence 356666666666666666664 456664 455554433332 334567888888887544
No 130
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=20.83 E-value=3.1e+02 Score=19.40 Aligned_cols=54 Identities=15% Similarity=0.285 Sum_probs=31.0
Q ss_pred HHHHHhHhccccchhhhhhhCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHhhccC
Q 020087 237 LGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFG 296 (331)
Q Consensus 237 ~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg 296 (331)
.|+.+.+-.|.....+..+.- .+|.+. .+|++....++... -+++|++.|..||
T Consensus 17 ~GIiLL~~ACIFAfidFSK~~----s~~~~~-~wRalSii~FIlG~-vl~lGilifs~y~ 70 (91)
T PHA02680 17 CGVLLLTAACVFAFVDFSKNT----SNVTDY-VWRALSVTCFIVGA-VLLLGLFVFSMYR 70 (91)
T ss_pred HHHHHHHHHHHHhhhhhhccC----CCCcch-hHHHHHHHHHHHHH-HHHHHHHHHHHhc
Confidence 445555555555555666543 456664 55665544443333 3466788888888
No 131
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=20.13 E-value=2.4e+02 Score=27.36 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=37.9
Q ss_pred cHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHH
Q 020087 41 KWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHEL 109 (331)
Q Consensus 41 s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l 109 (331)
+.....+..++.. .|.+- +.=|+...+++++++++++++...+-++.+.-|...-.+...+
T Consensus 460 srves~~~~Lk~s-------~pKan-K~LWIsvAliVLLAaLlSfLtg~~fq~~vdaAp~~~GdSw~S~ 520 (538)
T PF05781_consen 460 SRVESWASYLKTS-------FPKAN-KVLWISVALIVLLAALLSFLTGLFFQRCVDAAPVGTGDSWCSL 520 (538)
T ss_pred HHHHHHHHHHHHH-------HHHHH-HHHHHHHHHHHHHHHHHHHHhcccccchhccCCCCCCccchhh
Confidence 3344455555544 55555 3335666777888899999998777777765554333455553
No 132
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=20.04 E-value=77 Score=22.25 Aligned_cols=39 Identities=23% Similarity=0.453 Sum_probs=23.7
Q ss_pred hhhhCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 020087 253 IQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGN 297 (331)
Q Consensus 253 i~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg~ 297 (331)
+-+++ ++..+++ |.+.++.+.+++.-++.+.+||..|..
T Consensus 42 ~d~~i----~kK~k~k--K~iiiS~i~s~lalli~~~~G~g~y~~ 80 (84)
T PF09716_consen 42 IDDKI----EKKKKNK--KKIIISTIASGLALLIATALGYGYYKK 80 (84)
T ss_pred hhHHH----HHHHhcc--chhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555 4443444 666666666665557777778877754
Done!