Query 020087
Match_columns 331
No_of_seqs 118 out of 1103
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 11:35:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.7 2.1E-16 7.2E-21 147.6 19.2 248 35-297 5-252 (445)
2 3gia_A Uncharacterized protein 99.6 2.4E-14 8.1E-19 133.6 16.9 240 36-296 4-248 (444)
3 4djk_A Probable glutamate/gamm 99.4 1.3E-11 4.5E-16 117.1 18.4 246 35-297 8-262 (511)
4 2jln_A MHP1; hydantoin, transp 98.6 1.3E-05 4.4E-10 75.5 21.9 253 37-306 24-289 (501)
5 3dh4_A Sodium/glucose cotransp 96.9 0.01 3.5E-07 56.1 12.8 151 36-200 18-170 (530)
6 2xq2_A Sodium/glucose cotransp 95.8 0.12 4.2E-06 49.4 13.1 150 37-200 48-199 (593)
7 2a65_A Leutaa, Na(+):neurotran 87.0 19 0.00067 33.5 23.3 116 176-297 180-308 (519)
8 2wsw_A BCCT family betaine/car 75.0 53 0.0018 30.4 12.9 94 105-203 180-277 (509)
9 4ain_A Glycine betaine transpo 73.7 8.4 0.00029 35.9 7.3 116 38-155 94-230 (539)
10 3l1l_A Arginine/agmatine antip 9.4 8.8E+02 0.03 21.0 11.3 48 104-152 260-307 (445)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.72 E-value=2.1e-16 Score=147.58 Aligned_cols=248 Identities=17% Similarity=0.117 Sum_probs=167.7
Q ss_pred cccCCCcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHh
Q 020087 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~ 114 (331)
+++|+.+.++.+...+++++|+|++.+|....+.|. .+++.+++.+++.......+.|...+.|+.+ ...+..++.+
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~ 81 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPG--GSYAYARRCF 81 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTT--THHHHHHHHS
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CchhhHHhHc
Confidence 356789999999999999999999999998888886 4888889999999999999999988888754 6777779999
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 020087 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (331)
Q Consensus 115 G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~ 194 (331)
||++| ++..+..++.......++....++++...++... ..+....+.+ ..++++.....+..+...+++.+..
T Consensus 82 G~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~in~~g~~~~~~~~~~~~ 155 (445)
T 3l1l_A 82 GPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK----DPWVLTITCV-VVLWIFVLLNIVGPKMITRVQAVAT 155 (445)
T ss_dssp CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG----SHHHHHHHHH-HHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc----ccHHHHHHHH-HHHHHHHHHHHhchHHHHHHHHHHH
Confidence 99888 8888888887777777777777777765544321 0011111111 1111222223346666666665555
Q ss_pred HHHHHHHHhhheeeeeecCCCccccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccchhHHH
Q 020087 195 VMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV 274 (331)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~ 274 (331)
...+..++.+++..+...........+. .....++.++..++...+|+|.|++......+|+ |||+| +.+|++.
T Consensus 156 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~----k~p~r-~ip~a~~ 229 (445)
T 3l1l_A 156 VLALIPIVGIAVFGWFWFRGETYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPIATI 229 (445)
T ss_dssp HHHHHHHHHHHHTTSTTCCCCCCCCC------------HHHHHHHHHHTTTTTTHHHHGGGGB----SSHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChhhcccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHh----cCccc-cccHHHH
Confidence 5444333333222222211111111111 1112246688999999999999999999999999 99976 6999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCC
Q 020087 275 VAYIVVALCYFPVALIGYWMFGN 297 (331)
Q Consensus 275 ~~~~~~~~~y~~~~~~gy~~fg~ 297 (331)
.+..+++++|++..+......+.
T Consensus 230 ~~~~~~~~~y~~~~~~~~~~~~~ 252 (445)
T 3l1l_A 230 GGVLIAAVCYVLSTTAIMGMIPN 252 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCH
Confidence 99999999999988776666553
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.59 E-value=2.4e-14 Score=133.64 Aligned_cols=240 Identities=15% Similarity=0.124 Sum_probs=164.3
Q ss_pred ccCCCcHHHHHHHHHhhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHh
Q 020087 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (331)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~ 114 (331)
++|+.+.++.....+++++|+|++..|.. ...+|. .+++.+++.+++.......+.|...+.|+.+ ...+..++.+
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~G--g~y~~~~~~~ 80 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSNA--GPIAFIHKAI 80 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCTT--THHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--cHHHhHHHHh
Confidence 56789999999999999999999987755 555665 6888889999999999999999988888754 5667779999
Q ss_pred Cccc-cchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHH---HHHHHHHHHhcCCCCchhHHHHH
Q 020087 115 GEKL-GLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFI---MIFASVHFVLSHLPNFNAIAGVS 190 (331)
Q Consensus 115 G~~~-g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~---~v~~~~~~pl~~~~~~~~l~~~s 190 (331)
|+++ + ..+.+..++........+....++++..+++.. +...+. .+..++++.....+..+...+++
T Consensus 81 G~~~~~-g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~ 151 (444)
T 3gia_A 81 GDNIIT-GALSILLWMSYVISIALFAKGFAGYFLPLINAP--------INTFNIAITEIGIVAFFTALNFFGSKAVGRAE 151 (444)
T ss_dssp CSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9863 3 233455566666666777777777776654321 111221 11112222223334566666665
Q ss_pred HHHHHHHHHHHHhhheeeeeecCCCccccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccch
Q 020087 191 LAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMW 270 (331)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~ 270 (331)
.+.....+..++.+++..+...... +..+...+.++.++..++....|+|.|++.+....+|+ |||+| +.+
T Consensus 152 ~~~~~~~i~~~~~~ii~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~----k~P~r-~ip 222 (444)
T 3gia_A 152 FFIVLVKLLILGLFIFAGLITIHPS----YVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHI----ENPKK-NVP 222 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCGG----GTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGB----SSHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChh----hcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHc----cCccc-chh
Confidence 5555443333333322222221111 11111234567789999999999999999999999999 99976 689
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccC
Q 020087 271 RGVVVAYIVVALCYFPVALIGYWMFG 296 (331)
Q Consensus 271 ~~~~~~~~~~~~~y~~~~~~gy~~fg 296 (331)
|++..+..+++++|++..+......+
T Consensus 223 ~ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 223 RAIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999998877665554
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.39 E-value=1.3e-11 Score=117.06 Aligned_cols=246 Identities=10% Similarity=0.020 Sum_probs=137.6
Q ss_pred cccCCCcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHhhh--hcCCcccccHHHHHH
Q 020087 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITL-YTLWQMVEMHE--MVPGKRFDRYHELGQ 111 (331)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~-~t~~~l~~~~~--~~~~~~~~~y~~l~~ 111 (331)
+.+|+.++++.+...++.++| +..+|. ....|. ..++..++.+++.. .....+.|... +.| .+ .....++
T Consensus 8 ~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~-~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~G--G~y~~~~ 80 (511)
T 4djk_A 8 GKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGF-SLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EG--GVFAWVS 80 (511)
T ss_dssp ----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTT-HHHHHHHHHHHHTHHHHHHHHHHHHTTSCC------CHHHHHH
T ss_pred ccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CC--ChhhhHH
Confidence 467889999999999999986 667775 455564 34444444444433 37788888888 788 55 6667779
Q ss_pred HHhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHH--HHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHH
Q 020087 112 HAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVH--ELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGV 189 (331)
Q Consensus 112 ~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~--~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~ 189 (331)
+.+||++| ++..+..++.......++....++.+..++ +... . ..+......++..+++ .....+..+...++
T Consensus 81 ~~~g~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~-~~~~~~~~~~~~~~~~-~~in~~g~~~~~~~ 155 (511)
T 4djk_A 81 NTLGPRWG-FAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALN--E-DPITKTIAALIILWAL-ALTQFGGTKYTARI 155 (511)
T ss_dssp HHHCHHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGT--S-CSSHHHHHHHHHHHHH-HHHHHTCSSSHHHH
T ss_pred hhcCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc--c-CcHHHHHHHHHHHHHH-HHHHHhChHHHHHH
Confidence 99999888 888887777766666666665555554332 1111 0 1111122222222221 12222334444444
Q ss_pred HHHHHHH----HHHHHHhhheeeeeecCCCccccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCC
Q 020087 190 SLAAAVM----SLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS 265 (331)
Q Consensus 190 s~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~ 265 (331)
+.+.... .+..+++........+...+.+.+.....+.....+...++...+|+|.|.+......+|+ |||+
T Consensus 156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~----k~P~ 231 (511)
T 4djk_A 156 AKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEM----SNPG 231 (511)
T ss_dssp THHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSS----SCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhc----cCcc
Confidence 4433221 1111111111111111111000011000011111233455777899999999999999999 9998
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 020087 266 KGPMWRGVVVAYIVVALCYFPVALIGYWMFGN 297 (331)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg~ 297 (331)
| +++|++..++.+++++|++..+......++
T Consensus 232 k-~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~ 262 (511)
T 4djk_A 232 R-DYPLAMLLLMVAAICLSSVGGLSIAMVIPG 262 (511)
T ss_dssp T-THHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred c-chhHHHHHHHHHHHHHHHHHHHHHHeecCH
Confidence 7 699999999999999999988877766654
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.55 E-value=1.3e-05 Score=75.55 Aligned_cols=253 Identities=11% Similarity=0.049 Sum_probs=142.9
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhchHHHHHHh-hChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhC
Q 020087 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQ-LGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFG 115 (331)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~-~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G 115 (331)
+|+.++++-+...++..++.+.+.+...+.. .++..+++..++..++....+.+......+. + .++.++.|..||
T Consensus 24 ~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~-G---l~~~v~~R~~FG 99 (501)
T 2jln_A 24 ERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRW-G---INFTVAARMPFG 99 (501)
T ss_dssp GCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-C---CCHHHHTTTTSC
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhc-C---CChhhhhHhhcc
Confidence 4557888888888888888888877766544 3345556665655555555555555544422 3 269999999999
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 020087 116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAV 195 (331)
Q Consensus 116 ~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~~ 195 (331)
++ |..+..+...+..+|-........++.+..++....+- .+.....+++.++.++.. ....+.++++..+...
T Consensus 100 ~~-Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~----~~~~v~~~i~~~l~~~~~-~~G~~~i~~~~~~~~p 173 (501)
T 2jln_A 100 IR-GSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGF----TNLPLWIVIFGAIQVVTT-FYGITFIRWMNVFASP 173 (501)
T ss_dssp TT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHH
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----chHHHHHHHHHHHHHHHH-HhCHHHHHHHHHHHHH
Confidence 85 54788888888888888888888888888887655311 112344555666666666 4577777777777766
Q ss_pred HHHHHHHhhheeeeeecCCC-ccccccccccccchHhHHHHHHHHH-HhHhccccchhhhhhhCCCCCCCCCC-------
Q 020087 196 MSLSYSTIAWSASVRKGVQP-DVAYGYKAKTAAGTVFNFFSALGDV-AFAYAGHNVVLEIQATIPSTPEKPSK------- 266 (331)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~-~faf~~~~~~~~i~~~m~~~~~~p~~------- 266 (331)
..+...+.+.+..+.+.... +.....++ ......+..++..+ .+.-....+.++..+.+ |++++
T Consensus 174 ~~~i~~i~~~~~~l~~~g~~~~~~~~~~~---~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~----~~~~~~~~~~~~ 246 (501)
T 2jln_A 174 VLLAMGVYMVYLMLDGADVSLGEVMSMGG---ENPGMPFSTAIMIFVGGWIAVVVSIHDIVKEC----KVDPNASREGQT 246 (501)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHTTCCC---SSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTB----CCCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcchhhhccCC---ccchHHHHHHHHHHHHHHHHHHhccCcccccC----CCCccccccchh
Confidence 54444433333332221110 00001000 11122344444332 22223336788999998 55544
Q ss_pred --cc-chhHHHHHHHHHHHHHHHHHHHHhhccCCCCchhhhhC
Q 020087 267 --GP-MWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLS 306 (331)
Q Consensus 267 --~~-~~~~~~~~~~~~~~~y~~~~~~gy~~fg~~~~~~il~~ 306 (331)
++ ......++..+...+..++|+......+...+..++..
T Consensus 247 ~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~ 289 (501)
T 2jln_A 247 KADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITE 289 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHH
Confidence 11 22233344555555555555543333344344444444
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=96.90 E-value=0.01 Score=56.06 Aligned_cols=151 Identities=15% Similarity=0.132 Sum_probs=79.8
Q ss_pred ccCCCcHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHh
Q 020087 36 SSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (331)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~ 114 (331)
..|+.+++...+.+..+.+++. ++.+|......|+......+.. ++........+....+ +. +..|..|+.++-|
T Consensus 18 aGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~p~~~-~~--~~~T~~e~l~~Rf 93 (530)
T 3dh4_A 18 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFI-EK--GIYTIPEFVEKRF 93 (530)
T ss_dssp CCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTHHHHH-HT--TCCSHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHH-Hc--CCccHHHHHHHHc
Confidence 4678889999988888888886 6699988888887533211111 1111122223333333 22 2469999999999
Q ss_pred CccccchhhHHHHHH-HHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 020087 115 GEKLGLYIVVPQQLI-VEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (331)
Q Consensus 115 G~~~g~~~~~~~~~i-~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~ 193 (331)
|++.+ .+..+...+ +.+..+.+.+...+..++.++. ++...-+++..+++..-...-.++...+...+.
T Consensus 94 g~~~~-~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G---------i~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ 163 (530)
T 3dh4_A 94 NKKLK-TILAVFWISLYIFVNLTSVLYLGGLALETILG---------IPLMYSILGLALFALVYSIYGGLSAVVWTDVIQ 163 (530)
T ss_dssp CHHHH-HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT---------CCHHHHHHHHHHHHHHTTC------CCSHHHHH
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 98644 444443322 1222222222222333333321 333444455555555666677888888888888
Q ss_pred HHHHHHH
Q 020087 194 AVMSLSY 200 (331)
Q Consensus 194 ~~~~~~~ 200 (331)
.++.+..
T Consensus 164 ~~im~~g 170 (530)
T 3dh4_A 164 VFFLVLG 170 (530)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7765543
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=95.76 E-value=0.12 Score=49.37 Aligned_cols=150 Identities=16% Similarity=0.157 Sum_probs=77.4
Q ss_pred cCCCcHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhC
Q 020087 37 SRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFG 115 (331)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G 115 (331)
.|+.+++.....+..+.+++. .+..|....+.|+......+. .++........+....+ +.+ ..|.+|..++-||
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~-r~~--~~T~~e~l~~Rfg 123 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFI-EKG--IYTIPEFVEKRFN 123 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHH-HTT--CCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHH-hCC--CCCcHHHHHHHcc
Confidence 467788888888888777775 569998877888743222111 11111112222333223 223 4699999999999
Q ss_pred ccccchhhHHHHHH-HHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 020087 116 EKLGLYIVVPQQLI-VEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (331)
Q Consensus 116 ~~~g~~~~~~~~~i-~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~ 194 (331)
++.+ .+..+...+ ..+......+...+..++.++. ++....+++.++++......-.++...+...+..
T Consensus 124 ~~~~-~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G---------i~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~ 193 (593)
T 2xq2_A 124 KKLK-TILAVFWISLYIFVNLTSVLYLGGLALETILG---------IPLMYSILGLALFALVYSIYGGLSAVVWTDVIQV 193 (593)
T ss_dssp HHHH-HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHTTC---CCHHHHHHH
T ss_pred CchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------ccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 7544 444433222 2222222222233444444332 2333444455555566666677887777777776
Q ss_pred HHHHHH
Q 020087 195 VMSLSY 200 (331)
Q Consensus 195 ~~~~~~ 200 (331)
+..+..
T Consensus 194 iiml~~ 199 (593)
T 2xq2_A 194 FFLVLG 199 (593)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=87.03 E-value=19 Score=33.47 Aligned_cols=116 Identities=8% Similarity=0.002 Sum_probs=58.6
Q ss_pred HhcCCCCc-hhHHHHHHHHHHHHHHHHHhhheeeeeecC-----CCcccccc-ccccccchHhHHHHHHHHHHhHhccc-
Q 020087 176 VLSHLPNF-NAIAGVSLAAAVMSLSYSTIAWSASVRKGV-----QPDVAYGY-KAKTAAGTVFNFFSALGDVAFAYAGH- 247 (331)
Q Consensus 176 pl~~~~~~-~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~a~~~~~faf~~~- 247 (331)
-++..|.+ +...+.+.+....-++.+++++++.+.... .++.++-. ++.....+..-...|.+-.+|+.+.-
T Consensus 180 ~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw~~A~gQ~FFSLslG~ 259 (519)
T 2a65_A 180 VSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGF 259 (519)
T ss_dssp HHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHHHHHHHHHHHHhHHHH
Confidence 34566777 556666666666555555555554443221 01111000 11111112334678899999999875
Q ss_pred cchhhhhhhCCCCCCCCCCccchhHHHHHHHHHHHHHH-----HHHHHHhhccCC
Q 020087 248 NVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYF-----PVALIGYWMFGN 297 (331)
Q Consensus 248 ~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~y~-----~~~~~gy~~fg~ 297 (331)
..+....+.+ +++.++.|........-+.+-+ +++..+|.++|.
T Consensus 260 G~~ity~SY~------~~~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g~ 308 (519)
T 2a65_A 260 GAIITYASYV------RKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGV 308 (519)
T ss_dssp SHHHHHHTTS------CTTSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCH
T ss_pred hHHhhhhccc------CCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5666666655 3334455665554444444433 233445654553
No 8
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=74.96 E-value=53 Score=30.42 Aligned_cols=94 Identities=12% Similarity=-0.003 Sum_probs=51.3
Q ss_pred cHHHHH-HHHhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHH--HHHHHHHHHhcCCC
Q 020087 105 RYHELG-QHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFI--MIFASVHFVLSHLP 181 (331)
Q Consensus 105 ~y~~l~-~~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~--~v~~~~~~pl~~~~ 181 (331)
-|+=++ ++..|+ .| .++|+..++........-+=+....+..-++...+-+. +....+ ++...+++..+...
T Consensus 180 l~PllG~~r~~G~-~G-~~IDilav~at~~G~atsLGlg~~qi~~Gl~~lfGi~~---~~~~qi~ii~vit~~~~~Sa~s 254 (509)
T 2wsw_A 180 LVPLVGEKHVNGL-FG-TVVDNFYLVALILAMGTSLGLATPLVTECIQYLFGIPH---TLQLDAIIISCWILLNAICVAF 254 (509)
T ss_dssp CHHHHHHHHHHSH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHhhcCCcccCCc-hh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---ccHHHHHHHHHHHHHHHHHHHH
Confidence 455666 677775 67 78888777766654444444444455555555443111 112222 22333344556666
Q ss_pred Cc-hhHHHHHHHHHHHHHHHHHh
Q 020087 182 NF-NAIAGVSLAAAVMSLSYSTI 203 (331)
Q Consensus 182 ~~-~~l~~~s~~~~~~~~~~~~~ 203 (331)
.+ |..+++|.+-..+.+.+++.
T Consensus 255 Gl~kGIk~LS~~N~~la~~Ll~f 277 (509)
T 2wsw_A 255 GLQKGVKIASDVRTYLSFLMLGW 277 (509)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 66777777666655554333
No 9
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=73.66 E-value=8.4 Score=35.94 Aligned_cols=116 Identities=14% Similarity=0.106 Sum_probs=59.6
Q ss_pred CCCcHHHHHHHHHhhhhhhhhchHH----HH-HHh--hC-----hhHHHHHHHHHHHHHHHHHHHHHHhhhh---cCCcc
Q 020087 38 RNAKWWYSAFHNVTAMVGAGVLSLP----YA-MAQ--LG-----WGPGVAILILSWIITLYTLWQMVEMHEM---VPGKR 102 (331)
Q Consensus 38 ~~~s~~~~~~~l~~~~iG~GiL~lP----~~-~~~--~G-----~~~g~i~~i~~~~~~~~t~~~l~~~~~~---~~~~~ 102 (331)
++-|.++=+.++..+-+|+|++.-. .. +.+ .| .-.+...-.+=+.+..|+.+.+.-.... +.+++
T Consensus 94 PefS~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~WAiYav~glalaY~~yrk~~ 173 (539)
T 4ain_A 94 PEFRTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYSTFRVGR 173 (539)
T ss_dssp CSSCHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHCCCCCTCC
T ss_pred CCCcchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhcCCC
Confidence 4456677777888999999988432 22 111 01 1112222233333444444444333211 11111
Q ss_pred c-----ccHHHHHHH-HhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhc
Q 020087 103 F-----DRYHELGQH-AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCK 155 (331)
Q Consensus 103 ~-----~~y~~l~~~-~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~ 155 (331)
. .-|+=++++ ..|+ .| .++|+..++........-+=+....+..-+....+
T Consensus 174 pl~iss~l~PllG~r~~~G~-~G-~~IDilav~atv~GvatSLGlg~~Qi~~Gl~~lfG 230 (539)
T 4ain_A 174 KQLLSSAFVPLIGEKGAEGW-LG-KLIDILAIIATVFGTACSLGLGALQIGAGLSAANI 230 (539)
T ss_dssp CSCTTGGGHHHHHHHHTTSH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCcHHHHhHhhcCCCccCCc-ch-hhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 1 235555666 5664 67 78888887776655555555555555555555543
No 10
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=9.35 E-value=8.8e+02 Score=20.95 Aligned_cols=48 Identities=13% Similarity=0.100 Sum_probs=37.2
Q ss_pred ccHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q 020087 104 DRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHEL 152 (331)
Q Consensus 104 ~~y~~l~~~~~G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~ 152 (331)
..+.++.++.+|++ +..++.+...+..+++..++....++.+..+-++
T Consensus 260 ~p~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~d 307 (445)
T 3l1l_A 260 SPFGDAARMALGDT-AGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307 (445)
T ss_dssp CTHHHHHHHHHCTT-HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46788999999984 4477788888888888888888888877776554
Done!