Query 020087
Match_columns 331
No_of_seqs 118 out of 1103
Neff 9.7
Searched_HMMs 13730
Date Mon Mar 25 11:35:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020087.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020087hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 82.1 15 0.0011 31.8 22.2 108 41-152 6-118 (509)
2 d1sfea1 a.4.2.1 (A:93-176) Ada 4.8 2.8E+02 0.02 16.8 2.9 21 96-116 13-33 (84)
3 d1q90b_ f.21.1.2 (B:) Cytochro 4.8 5.8E+02 0.042 18.4 6.1 27 271-297 112-138 (212)
4 d1qnta1 a.4.2.1 (A:92-176) O6- 4.8 3.5E+02 0.026 16.3 3.5 23 93-115 10-32 (85)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 4.4 5.4E+02 0.039 19.6 5.6 50 43-92 380-431 (447)
6 d2h8pc1 f.14.1.1 (C:22-78) Pot 3.9 3.6E+02 0.026 14.9 2.7 37 271-308 6-42 (57)
7 d1rh5b_ f.23.28.1 (B:) Preprot 3.7 2.8E+02 0.021 15.5 2.0 29 262-294 16-44 (56)
8 d2r6gf1 e.70.1.1 (F:13-260) Ma 3.7 6.2E+02 0.045 18.7 4.8 29 56-84 14-42 (248)
9 d1q90g_ f.23.26.1 (G:) PetG su 3.2 3.2E+02 0.023 12.8 2.1 14 69-82 8-21 (30)
10 d2yvxa3 f.57.1.1 (A:276-448) M 3.0 7.7E+02 0.056 16.9 4.6 50 237-289 120-169 (173)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=82.06 E-value=15 Score=31.82 Aligned_cols=108 Identities=17% Similarity=0.176 Sum_probs=59.1
Q ss_pred cHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHH----HHHHHHhhhhcCCcccccHHHHHHHHhC
Q 020087 41 KWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYT----LWQMVEMHEMVPGKRFDRYHELGQHAFG 115 (331)
Q Consensus 41 s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~g~i~~i~~~~~~~~t----~~~l~~~~~~~~~~~~~~y~~l~~~~~G 115 (331)
|..+-++..++..+|.| +--.||-..+-|-..-++..++..++.... =..+.+..+ ... ...+..+.....+
T Consensus 6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~-~g~--i~~~~~i~~~~~~ 82 (509)
T d2a65a1 6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGG-AQG--HGTTPAIFYLLWR 82 (509)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTT--CCSHHHHHHHHSC
T ss_pred ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCc--ccHHHHHHHHhcc
Confidence 55788889999999999 457999976555333333333333333333 233333322 111 3467777666655
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q 020087 116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHEL 152 (331)
Q Consensus 116 ~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~ 152 (331)
.+.. ..+.+...+..+..++-|.+..+-.+..+...
T Consensus 83 ~~~~-~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~s 118 (509)
T d2a65a1 83 NRFA-KILGVFGLWIPLVVAIYYVYIESWTLGFAIKF 118 (509)
T ss_dssp SHHH-HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Ccch-hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333 33444455555556666666655555444443
No 2
>d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia coli [TaxId: 562]}
Probab=4.83 E-value=2.8e+02 Score=16.78 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=14.6
Q ss_pred hhcCCcccccHHHHHHHHhCc
Q 020087 96 EMVPGKRFDRYHELGQHAFGE 116 (331)
Q Consensus 96 ~~~~~~~~~~y~~l~~~~~G~ 116 (331)
...|..+..||.|+++.+--+
T Consensus 13 ~~Ip~G~v~TYg~iA~~~g~~ 33 (84)
T d1sfea1 13 RTIPCGETVSYQQLANAIGKP 33 (84)
T ss_dssp TTSCTTCCEEHHHHHHHTTCT
T ss_pred HcCCCCCeeeHHHHHHHhCCc
Confidence 346655567999999887433
No 3
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.81 E-value=5.8e+02 Score=18.35 Aligned_cols=27 Identities=19% Similarity=0.317 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCC
Q 020087 271 RGVVVAYIVVALCYFPVALIGYWMFGN 297 (331)
Q Consensus 271 ~~~~~~~~~~~~~y~~~~~~gy~~fg~ 297 (331)
...+..-.+..++-+..|+.||..=.+
T Consensus 112 e~~W~~Gv~l~~l~m~~aftGY~Lpw~ 138 (212)
T d1q90b_ 112 ELTWVTGVIMAVCTVSFGVTGYSLPWD 138 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCB
T ss_pred cceehHhHHHHHHHHHHHHhhhhcchh
Confidence 455666666777778888999976655
No 4
>d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.78 E-value=3.5e+02 Score=16.27 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=15.9
Q ss_pred HhhhhcCCcccccHHHHHHHHhC
Q 020087 93 EMHEMVPGKRFDRYHELGQHAFG 115 (331)
Q Consensus 93 ~~~~~~~~~~~~~y~~l~~~~~G 115 (331)
+.....|..+..||.++++.+--
T Consensus 10 ~~l~~IP~G~v~TYg~iA~~~g~ 32 (85)
T d1qnta1 10 KLLKVVKFGEVISYQQLAALAGN 32 (85)
T ss_dssp HHHHHCCTTCCEEHHHHHHHTTC
T ss_pred HHHhcCCCCCcccHHHHHHHcCC
Confidence 44445666567899999988643
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.38 E-value=5.4e+02 Score=19.59 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=24.0
Q ss_pred HHHHHHHHhhhhhh--hhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHH
Q 020087 43 WYSAFHNVTAMVGA--GVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMV 92 (331)
Q Consensus 43 ~~~~~~l~~~~iG~--GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~ 92 (331)
..+..+.++...|. |.+..++.....|+......+..+.++.......+.
T Consensus 380 ~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 380 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443332 233344556667876555555555554444444333
No 6
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=3.92 E-value=3.6e+02 Score=14.94 Aligned_cols=37 Identities=8% Similarity=0.123 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhhhhCCC
Q 020087 271 RGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLE 308 (331)
Q Consensus 271 ~~~~~~~~~~~~~y~~~~~~gy~~fg~~~~~~il~~~~ 308 (331)
|.+..+..+.+++-++.+..-|..=.+. +++-..+.+
T Consensus 6 R~~~~~~~~~~i~i~~~s~~~y~~E~~~-~~~~f~sip 42 (57)
T d2h8pc1 6 RAAGAATVLLVIVLLAGSYLAVLAERGA-PGAQLITYP 42 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCCCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCccccccc
Confidence 4444555555555555666666665443 332244444
No 7
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.69 E-value=2.8e+02 Score=15.47 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=14.4
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 020087 262 EKPSKGPMWRGVVVAYIVVALCYFPVALIGYWM 294 (331)
Q Consensus 262 ~~p~~~~~~~~~~~~~~~~~~~y~~~~~~gy~~ 294 (331)
++|++.-+.+....+ .+=..++|..||.-
T Consensus 16 ~KP~~~Ef~~ia~v~----~iG~~i~G~IGf~I 44 (56)
T d1rh5b_ 16 KKPTKDEYLAVAKVT----ALGISLLGIIGYII 44 (56)
T ss_dssp ECCCHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 667776555544432 22233455555543
No 8
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.68 E-value=6.2e+02 Score=18.65 Aligned_cols=29 Identities=21% Similarity=-0.079 Sum_probs=19.3
Q ss_pred hhhchHHHHHHhhChhHHHHHHHHHHHHH
Q 020087 56 AGVLSLPYAMAQLGWGPGVAILILSWIIT 84 (331)
Q Consensus 56 ~GiL~lP~~~~~~G~~~g~i~~i~~~~~~ 84 (331)
.++...|..+++..|..+.+++++..++.
T Consensus 14 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 42 (248)
T d2r6gf1 14 LVGYLVVLMYAQGEYLFAITTLILSSAGL 42 (248)
T ss_dssp HHHHTHHHHHGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHheE
Confidence 34667788888888876666665554433
No 9
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.19 E-value=3.2e+02 Score=12.77 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=6.9
Q ss_pred ChhHHHHHHHHHHH
Q 020087 69 GWGPGVAILILSWI 82 (331)
Q Consensus 69 G~~~g~i~~i~~~~ 82 (331)
|+++|.+-.-+.++
T Consensus 8 GivlGlipiTl~Gl 21 (30)
T d1q90g_ 8 GIVLGLVPVTIAGL 21 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHH
Confidence 45555555444444
No 10
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=2.97 E-value=7.7e+02 Score=16.87 Aligned_cols=50 Identities=16% Similarity=0.005 Sum_probs=37.1
Q ss_pred HHHHHhHhccccchhhhhhhCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHH
Q 020087 237 LGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVAL 289 (331)
Q Consensus 237 ~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~~ 289 (331)
+.....+=..-..+|-+.+.++ .||..-.-+-.....-.....+|+.++.
T Consensus 120 ~~~~~ia~~~G~~lPlll~klg---~DPA~aS~P~itti~Di~g~~iyf~iA~ 169 (173)
T d2yvxa3 120 VLIVFFANLVGAMLPFLLRRLG---VDPALVSNPLVATLSDVTGLLIYLSVAR 169 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS---CCGGGSCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC---CChhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3334444445567888888886 7888877778888888999999987764
Done!