BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020088
(331 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3UHX9|CI114_MOUSE Uncharacterized protein C9orf114 homolog OS=Mus musculus
GN=D2Wsu81e PE=2 SV=1
Length = 385
Score = 231 bits (588), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 122/262 (46%), Positives = 163/262 (62%), Gaps = 8/262 (3%)
Query: 62 TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRS 121
T+SVA+PGSI+DN QS EL T LAGQIARA TIF +DE+VVFD + S
Sbjct: 75 TLSVALPGSILDNAQSPELRTYLAGQIARACTIFCVDEIVVFDEEGQDTK----SVEGEF 130
Query: 122 NRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPF 181
+ L R+LQYLE PQYLRKA F H L+F G+L PLD+PHH+R+ E + F
Sbjct: 131 RGVGKKGQACVQLARILQYLECPQYLRKAFFPKHQDLQFAGILNPLDSPHHMRQDEESEF 190
Query: 182 REGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPR-QVVPP 240
REGV + G+LV+ G+ K V +D+ LDPG+RVTV + + + + + VV
Sbjct: 191 REGVVVDRPTKAGHGSLVNCGMKKEVKIDKKLDPGLRVTVRLNQQQLPECKTYKGTVVSS 250
Query: 241 SKPK-ESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRHL 299
P+ ++G+YWGY VR A +S+VF ++ GYD IGTSE G V S+ LP+FRH
Sbjct: 251 QDPRTKAGLYWGYTVRLASCLSAVFAEAPFQDGYDLTIGTSERGSDVASAQ--LPSFRHA 308
Query: 300 LIAFGGLAGLEESIEEDDGLKV 321
L+ FGGL GLE +++ D L+V
Sbjct: 309 LVVFGGLQGLEAAVDADPNLEV 330
>sp|Q5T280|CI114_HUMAN Uncharacterized protein C9orf114 OS=Homo sapiens GN=C9orf114 PE=1
SV=3
Length = 376
Score = 224 bits (572), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 120/272 (44%), Positives = 161/272 (59%), Gaps = 8/272 (2%)
Query: 62 TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRS 121
T+SVA+PGSI+DN QS EL T LAGQIARA IF +DE+VVFD +
Sbjct: 74 TLSVALPGSILDNAQSPELRTYLAGQIARACAIFCVDEIVVFDEEGQDAKTVEGEFTGVG 133
Query: 122 NRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPF 181
+ L R+LQYLE PQYLRKA F H L+F G+L PLD+PHH+R+ E + F
Sbjct: 134 KKG----QACVQLARILQYLECPQYLRKAFFPKHQDLQFAGLLNPLDSPHHMRQDEESEF 189
Query: 182 REGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPR-QVVPP 240
REG+ + G+ V+ G+ K V +D+ L+PG+RVTV + ++ D + +VV
Sbjct: 190 REGIVVDRPTRPGHGSFVNCGMKKEVKIDKNLEPGLRVTVRLNQQQHPDCKTYHGKVVSS 249
Query: 241 SKPK-ESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRHL 299
P+ ++G+YWGY VR A +S+VF ++ GYD IGTSE G V S+ LP FRH
Sbjct: 250 QDPRTKAGLYWGYTVRLASCLSAVFAEAPFQDGYDLTIGTSERGSDVASAQ--LPNFRHA 307
Query: 300 LIAFGGLAGLEESIEEDDGLKVHYLLKSYSLY 331
L+ FGGL GLE + D L+V + LY
Sbjct: 308 LVVFGGLQGLEAGADADPNLEVAEPSVLFDLY 339
>sp|Q10950|YMP6_CAEEL Uncharacterized protein B0361.6 OS=Caenorhabditis elegans
GN=B0361.6 PE=4 SV=1
Length = 378
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 152/269 (56%), Gaps = 20/269 (7%)
Query: 62 TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRS 121
T+S+AVPG ++N QS EL T +AGQIARA T++R+DE++++D + + ++ N +
Sbjct: 67 TISIAVPGQFLNNAQSAELRTYMAGQIARAATLYRVDEIIIYDESCRMTDEAVNAYYNGT 126
Query: 122 NR-----SDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKH 176
+ ++ N G +L ++L+YLE PQYLRK LF + L+ G+L PLDA HHL+
Sbjct: 127 WQGNLIPAETNYEGCFYLAKILEYLECPQYLRKDLFPIQKPLKNAGLLNPLDAQHHLKYD 186
Query: 177 EWA-PFREGVTLKENAPNSVGTLVDVGLNKHVVVDQ---VLDPGVRVTVAMGTNRNLDAD 232
E FREGV LK+ + + G + ++GL K +D L P RVTV + +NL
Sbjct: 187 EKTLRFREGVVLKKRSKDGRGPICNIGLEKEFEIDSDAVQLPPYTRVTVEI---KNLTEQ 243
Query: 233 SP--RQVVP--PSKPKESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNS 288
R + + +E+G+YWGY VR + V + +D + G S G + +
Sbjct: 244 CKLYRGSITSGATVTRETGLYWGYSVRLMTGLQKVLQ----AKKFDIVAGVSPRGKLASQ 299
Query: 289 SDLTLPTFRHLLIAFGGLAGLEESIEEDD 317
D+ + +L+ FGG+AG++ ++E ++
Sbjct: 300 MDVCILNKPKILLVFGGVAGVDAAVESEE 328
>sp|O13641|YGWG_SCHPO Uncharacterized protein C8D2.16c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pi049 PE=4 SV=1
Length = 315
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 135/271 (49%), Gaps = 26/271 (9%)
Query: 48 KRDQLNDDAPIEVPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKS 107
K ++ P T+S+A+P S ++ +L+L T +I+R V+++ IDE+++ ++
Sbjct: 3 KESEIQSLPPTRRYTISLALPISSLNVAYNLQLKTSFVWKISRIVSLYGIDEIILLEDPE 62
Query: 108 SSDNYSRSSAANRSNRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLP-- 165
N + ++ + D + FL LL Y ETP ++RK LF ++ L++ P
Sbjct: 63 YVQNTQVHTLSSDAYLKDPTK----FLTDLLCYFETPFFMRKELFPLNPHLKYTSCFPLL 118
Query: 166 PLDAPHHLRKHEWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVD--QVLDPGVRVTVAM 223
PL + P+REG+ + +++ GL+ +V+V VL P RVTV
Sbjct: 119 PLRNDKASTVNIEFPYREGIVTHPSPQAKNKYIINAGLSHNVIVSSPSVLAPRTRVTV-- 176
Query: 224 GTNRNLDADSPRQ-------VVPPSKPKES-GMYWGYKVRYAPNISSVFKNCSYKGGYDH 275
L A SP + +V S P+E G YWGYKVR + S + K+ YKGGYD
Sbjct: 177 ----RLKAQSPNEEGQLQGDIVSFSAPREKGGHYWGYKVRSCLS-SQLCKSSPYKGGYDF 231
Query: 276 LIGTSEHGDIVNSSDL--TLP-TFRHLLIAF 303
++ + + S +L +LP +FRH ++
Sbjct: 232 VVQINSQTSAITSKELEASLPSSFRHAVLVL 262
>sp|P53336|YG5X_YEAST Uncharacterized protein YGR283C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YGR283C PE=1 SV=1
Length = 341
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 25/208 (12%)
Query: 64 SVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRSNR 123
S+ +P ++IDN +LE T A QIAR +F + E++V D S+ + +R
Sbjct: 41 SICIPTTVIDNCNNLEQVTFTAYQIARTAVLFNVQEIIVLDQ-------SKDKKHEKKSR 93
Query: 124 SDENESGAAFLVRLLQYLETPQYLRKALFSMHSS--LRFVGMLPPLDAPHHLRKHEWAPF 181
S E S L LLQY TP L F + L+ PPL+ + +
Sbjct: 94 SKETISDCLLLATLLQYFVTPPNLLDTTFKKKNKLYLKCASTFPPLNQLPFMNASAEQHY 153
Query: 182 REGVTL-----KENAPNSVGTLVDVGLNKHVVV-DQVLDPGVRVTVAMGTNRNLDADSPR 235
+EG+++ K + +++ LV +G N+ + + +Q + RVTV D+ R
Sbjct: 154 KEGLSIARDSSKGKSDDALTNLVYIGKNQIITLSNQNIPNTARVTV----------DTER 203
Query: 236 QVVPPSKPKESGMYWGYKVRYAPNISSV 263
+ V G GY VR A ++ V
Sbjct: 204 KEVVSPIDAYKGKPLGYHVRMASTLNEV 231
>sp|Q06847|Y1688_HALSA Uncharacterized protein VNG_1688C OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=VNG_1688C
PE=4 SV=2
Length = 283
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 52/106 (49%), Gaps = 17/106 (16%)
Query: 62 TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRS 121
T SV VP S++ + ATR G +ARA +FRID VVVF ++
Sbjct: 2 TRSVLVPSSLVREAEDKREATRKLGYVARAAAVFRIDRVVVFPDEDG------------- 48
Query: 122 NRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPL 167
E + G F+ +L+Y TP YLRK F L + G+LPPL
Sbjct: 49 ----ERQWGGGFVETVLRYAATPPYLRKEAFDTRDELAYAGVLPPL 90
>sp|Q04867|YM91_YEAST Uncharacterized protein YMR310C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YMR310C PE=1 SV=1
Length = 317
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 118/276 (42%), Gaps = 44/276 (15%)
Query: 64 SVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRSNR 123
S+ +P +++ + ++L T Q+A+ ++F + EVV+ ++ S D
Sbjct: 21 SLCIPTTLVSDCRNLSQITHKVYQVAKFASLFNVSEVVILEDNSQVDA------------ 68
Query: 124 SDENESGAAFLVRLLQYLETPQYLRKALFS--MHSSLRFVGMLPPLDAPHHLR--KHEWA 179
+ + S A ++ LLQY TP YLR +F+ L LP L R K +
Sbjct: 69 TKKKISTAKLILALLQYFVTPPYLRNTVFNEKFRPYLTAASKLPRLSTLPFTRYQKQDHG 128
Query: 180 PFREGVTLKENAPN----SVGTL------VDVGLNKHVVVDQVLDP-GVRVTVAMGTNRN 228
+REG+T+K P +G + +++G +K + + L P RVT+ T
Sbjct: 129 RYREGLTIKMQKPTLARKKIGKVFKQTKYINIGKSKALALQSQLVPINARVTIDTIT--- 185
Query: 229 LDADSPRQVVPPSKP--KESGM--YWGYKVRYAPNISSVFKNCSYKGGYDHLIG---TSE 281
R++V P + +G+ +GY R A + + +F K GY + T+
Sbjct: 186 ------RKIVSPQEAYGDFTGLDSQYGYYTRIASSFTDLFMKGPLKEGYTQSVYVPLTTR 239
Query: 282 HGDIVNSSDL-TLPTFRHLLIAFGGLAGLEESIEED 316
I S L T T H+L+ F L + + D
Sbjct: 240 DTSIPELSSLPTAETNPHILLVFSTWDTLARAFKLD 275
>sp|P20571|Y1612_HALMA Uncharacterized protein rrnAC1612 OS=Haloarcula marismortui (strain
ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rrnAC1612 PE=4 SV=2
Length = 281
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 32/184 (17%)
Query: 62 TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRS 121
T SV VP S+ + ATR G +ARA ++R+D + V+ + + +
Sbjct: 2 TTSVLVPSSLAREAEDRREATRKLGYVARAAAVYRVDRLTVYPDPDGAGKW--------- 52
Query: 122 NRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPF 181
E G F+ +L+Y TP +LRK ++ L +VG+LPPL +R +
Sbjct: 53 ------EDG--FVETVLRYAATPPHLRKEMWGKRDELEYVGVLPPL----RVRSQTGSGS 100
Query: 182 REGVTLKENAPNSVG----TLVDVGLNKHVVV----DQVLDPGVRVTVAMGTNRNLDA-- 231
+L++ VG V+ G+ + + D ++ G RVTV + + R + A
Sbjct: 101 EGSGSLRQGIVTEVGADGRVRVNCGMQHPISLPVPADMDVEQGERVTVRVSSRRPVRAKL 160
Query: 232 -DSP 234
D+P
Sbjct: 161 VDAP 164
>sp|A1Z9P3|SHRM_DROME Protein Shroom OS=Drosophila melanogaster GN=Shroom PE=1 SV=2
Length = 1576
Score = 35.0 bits (79), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 18/138 (13%)
Query: 184 GVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPG-----VRVTVAMGTNRNLDADSPRQVV 238
GVT K PN++ ++ +G+ H L PG VT+ G+N NL +SP
Sbjct: 963 GVTGK--LPNNLPDVLPLGVKLHQ--QPKLQPGSPNGDANVTLRYGSNNNLTGNSPTVAP 1018
Query: 239 PPSKPKESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRH 298
PP Y+G RY+ + S K S+ D+ ++S +T+PT
Sbjct: 1019 PP--------YYGGGQRYSTPVLGQGYGKSSKPVTPQQYTRSQSYDVKHTSAVTMPTMSQ 1070
Query: 299 LLIAFGGLA-GLEESIEE 315
+ A LE ++EE
Sbjct: 1071 SHVDLKQAAHDLETTLEE 1088
>sp|O88485|DC1I1_MOUSE Cytoplasmic dynein 1 intermediate chain 1 OS=Mus musculus
GN=Dync1i1 PE=1 SV=2
Length = 628
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 50 DQLNDDAPIEVPTVSVAVPG-SIIDNTQSLELATRLA-GQIARAVTIFRIDEVVVFDNKS 107
D N ++ EVPT SVA+ G S ++ + + +A G + I+ + E+ V N
Sbjct: 541 DLWNLNSDTEVPTASVAIEGASALNRVRWAQGGKEVAVGDSEGRIWIYDVGELAVPHNDE 600
Query: 108 SSDNYSRSSAANRSNRSDENESGAAFL 134
+ ++R+ R+NR+D E GA L
Sbjct: 601 WT-RFARTLVEIRANRADSEEEGAVEL 626
>sp|Q29RQ3|DC1I1_BOVIN Cytoplasmic dynein 1 intermediate chain 1 OS=Bos taurus GN=DYNC1I1
PE=1 SV=1
Length = 608
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 52 LNDDAPIEVPTVSVAVPG-SIIDNTQSLELATRLA-GQIARAVTIFRIDEVVVFDNKSSS 109
LN+D EVPT SVA+ G S ++ + + +A G + I+ + E+ V N +
Sbjct: 525 LNNDT--EVPTASVAIEGASALNRVRWAQGGKEVAVGDSEGRIWIYDVGELAVPHNDEWT 582
Query: 110 DNYSRSSAANRSNRSDENESGAAFL 134
++R+ R+NR+D E GA L
Sbjct: 583 -RFARTLVEIRANRADSEEEGAVEL 606
>sp|Q0JKK6|WOX7_ORYSJ WUSCHEL-related homeobox 7 OS=Oryza sativa subsp. japonica GN=WOX7
PE=2 SV=2
Length = 533
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 239 PPSKPKESGMYWGY-KVRYAPNISSVFKNCSYKGGY-DHLIGTSEHGDIVNSSDLTLPT 295
PPS P +GM+WG APN ++ K+C++ G H G+++ + SS ++ T
Sbjct: 294 PPSSPGAAGMFWGLCNDVQAPN-NTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIAT 351
>sp|Q63100|DC1I1_RAT Cytoplasmic dynein 1 intermediate chain 1 OS=Rattus norvegicus
GN=Dync1i1 PE=1 SV=1
Length = 643
Score = 32.0 bits (71), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 48 KRDQLNDDAPIEVPTVSVAVPGSI-IDNTQSLELATRLA-GQIARAVTIFRIDEVVVFDN 105
+ D N ++ EVPT SVA+ G+ ++ + + +A G + I+ + E+ V N
Sbjct: 554 RLDLWNLNSDTEVPTASVAIEGAYALNRVRWAQGGKEVAVGDSEGRIWIYDVGELAVPHN 613
Query: 106 KSSSDNYSRSSAANRSNRSDENESGAAFL 134
+ ++R+ R+NR+D E GA L
Sbjct: 614 DEWT-RFARTLVEIRANRADSEEEGAVEL 641
>sp|Q9JLM8|DCLK1_MOUSE Serine/threonine-protein kinase DCLK1 OS=Mus musculus GN=Dclk1 PE=1
SV=1
Length = 756
Score = 32.0 bits (71), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 103 FDNKSSSDNYSRSSAANRSNRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVG 162
FD + + YSR S N + + + R LQ L + + +K F + F G
Sbjct: 12 FDERDKAQRYSRGSRVNGLPSPTHSAHCSFYRTRTLQTLSSEKKAKKVRFYRNGDRYFKG 71
Query: 163 MLPPLDAPHHLRKHE--WAPFREGVTLKENAPNSVGTLVDV-GLNKHVVVDQVLD 214
++ + +P R E A ++ N P V T+ + GL K +DQ+++
Sbjct: 72 IVYAI-SPDRFRSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKISSLDQLVE 125
>sp|O15075|DCLK1_HUMAN Serine/threonine-protein kinase DCLK1 OS=Homo sapiens GN=DCLK1 PE=1
SV=2
Length = 740
Score = 31.6 bits (70), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 103 FDNKSSSDNYSRSSAANRSNRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVG 162
FD + + YSR S N + + + R LQ L + + +K F + F G
Sbjct: 12 FDERDKAQRYSRGSRVNGLPSPTHSAHCSFYRTRTLQTLSSEKKAKKVRFYRNGDRYFKG 71
Query: 163 MLPPLDAPHHLRKHE--WAPFREGVTLKENAPNSVGTLVDV-GLNKHVVVDQVLD 214
++ + +P R E A ++ N P V T+ + GL K +DQ+++
Sbjct: 72 IVYAI-SPDRFRSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKISSLDQLVE 125
>sp|O14576|DC1I1_HUMAN Cytoplasmic dynein 1 intermediate chain 1 OS=Homo sapiens
GN=DYNC1I1 PE=1 SV=2
Length = 645
Score = 31.6 bits (70), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 52 LNDDAPIEVPTVSVAVPG-SIIDNTQSLELATRLA-GQIARAVTIFRIDEVVVFDNKSSS 109
LN+D EVPT SVA+ G S ++ + + +A G + ++ + E+ V N +
Sbjct: 562 LNNDT--EVPTASVAIEGASALNRVRWAQAGKEVAVGDSEGRIWVYDVGELAVPHNDEWT 619
Query: 110 DNYSRSSAANRSNRSDENESGAAFL 134
++R+ R+NR+D E G L
Sbjct: 620 -RFARTLVEIRANRADSEEEGTVEL 643
>sp|Q6N622|GLYA2_RHOPA Serine hydroxymethyltransferase 2 OS=Rhodopseudomonas palustris
(strain ATCC BAA-98 / CGA009) GN=glyA2 PE=3 SV=1
Length = 434
Score = 31.6 bits (70), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 172 HLRKHEWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDP----GVRVTVAMGTNR 227
HL + PF + E A SVG + LNK+ + + P G+RV A GT+R
Sbjct: 331 HLAVVDLRPFGVTGNIAEQALESVG----ITLNKNAIPNDPEKPMVTSGIRVGTAAGTSR 386
Query: 228 NLDADSPRQV 237
AD R++
Sbjct: 387 GFGADQYREI 396
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,735,876
Number of Sequences: 539616
Number of extensions: 5468014
Number of successful extensions: 12814
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 12772
Number of HSP's gapped (non-prelim): 55
length of query: 331
length of database: 191,569,459
effective HSP length: 118
effective length of query: 213
effective length of database: 127,894,771
effective search space: 27241586223
effective search space used: 27241586223
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)