Query 020088
Match_columns 331
No_of_seqs 126 out of 274
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 11:36:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020088.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020088hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k3r_A Conserved protein MT000 100.0 1.1E-76 3.9E-81 559.2 20.5 214 60-312 3-227 (268)
2 3dcm_X AdoMet, uncharacterized 48.2 8 0.00027 34.4 2.1 66 254-319 85-158 (192)
3 3l8u_A SMU.1707C, putative rRN 47.8 29 0.00098 30.0 5.6 66 254-325 73-142 (182)
4 4fak_A Ribosomal RNA large sub 42.6 2.9 0.0001 36.3 -1.6 49 273-321 74-131 (163)
5 1v2x_A TRNA (GM18) methyltrans 42.3 14 0.00048 32.1 2.8 31 71-105 26-56 (194)
6 3kty_A Probable methyltransfer 41.9 15 0.00052 31.2 2.9 32 71-106 14-45 (173)
7 2ha8_A TAR (HIV-1) RNA loop bi 40.6 16 0.00053 31.6 2.7 29 71-103 30-58 (184)
8 3ilk_A Uncharacterized tRNA/RR 39.4 18 0.00061 33.0 3.1 32 71-106 11-42 (244)
9 1zjr_A TRNA (guanosine-2'-O-)- 39.3 15 0.0005 32.6 2.4 31 71-105 29-59 (211)
10 1to0_A Hypothetical UPF0247 pr 33.8 5.4 0.00019 34.7 -1.3 49 274-322 71-128 (167)
11 3onp_A TRNA/RRNA methyltransfe 33.5 28 0.00097 31.7 3.4 61 254-320 61-135 (249)
12 3onp_A TRNA/RRNA methyltransfe 32.9 23 0.00078 32.3 2.7 32 71-106 8-39 (249)
13 3n4j_A RNA methyltransferase; 30.9 26 0.00088 29.7 2.5 30 71-105 8-37 (165)
14 3l8u_A SMU.1707C, putative rRN 30.0 27 0.00092 30.2 2.5 28 71-102 21-48 (182)
15 3e5y_A TRMH family RNA methylt 28.4 30 0.001 29.0 2.5 31 71-106 9-39 (160)
16 2i6d_A RNA methyltransferase, 28.2 31 0.0011 31.3 2.7 32 71-106 107-138 (257)
17 3ic6_A Putative methylase fami 28.1 34 0.0012 30.9 3.0 32 71-106 21-52 (223)
18 3dcm_X AdoMet, uncharacterized 27.1 47 0.0016 29.4 3.6 25 82-106 28-52 (192)
19 1ipa_A RRMH, RNA 2'-O-ribose m 26.5 35 0.0012 31.4 2.8 31 71-105 120-150 (274)
20 1gz0_A Hypothetical tRNA/RRNA 26.3 36 0.0012 30.9 2.8 30 72-105 110-139 (253)
21 1ns5_A Hypothetical protein YB 26.2 5.7 0.0002 34.2 -2.5 49 274-322 67-123 (155)
22 1o6d_A Hypothetical UPF0247 pr 25.2 5.2 0.00018 34.8 -2.9 42 274-315 66-113 (163)
23 1x7o_A Avirb, rRNA methyltrans 25.0 38 0.0013 31.3 2.7 31 72-106 131-161 (287)
24 3nk6_A 23S rRNA methyltransfer 23.2 44 0.0015 30.8 2.7 30 71-104 123-152 (277)
25 3ilk_A Uncharacterized tRNA/RR 20.9 60 0.002 29.5 3.1 68 248-322 57-135 (244)
26 3e5y_A TRMH family RNA methylt 20.2 82 0.0028 26.3 3.7 67 254-326 61-133 (160)
No 1
>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: b.40.4.10 c.116.1.2
Probab=100.00 E-value=1.1e-76 Score=559.23 Aligned_cols=214 Identities=31% Similarity=0.525 Sum_probs=193.8
Q ss_pred cceEEEEecCccccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEcCCCCCCccccccccccCCCCCCCcchHHHHHHHHh
Q 020088 60 VPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRSNRSDENESGAAFLVRLLQ 139 (331)
Q Consensus 60 ~~tvSIAIP~SIlsnaqslelkT~~agqIARAaaIF~VdEIVVydd~~~~~~~~~~~~~~~~~~~~~~~~~~~fL~~lLq 139 (331)
++|+|||||+||++||||+|+|||+|||||||||||||||||||||... +++.||++|||
T Consensus 3 ~~t~SIaIP~Sil~~a~s~e~kT~~~gqIARAaaIF~VdEIvVy~d~~~--------------------~~~~~l~~iL~ 62 (268)
T 1k3r_A 3 RVDLSLFIPDSLTAETGDLKIKTYKVVLIARAASIFGVKRIVIYHDDAD--------------------GEARFIRDILT 62 (268)
T ss_dssp SCEEEEEEETTTTTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEECSSC--------------------CCHHHHHHHHH
T ss_pred eeEEEEEechHHhccCCCHHHHHHHHHHHHHHHHhccccEEEEEeCCCC--------------------CHHHHHHHHHH
Confidence 3899999999999999999999999999999999999999999988631 25889999999
Q ss_pred hhcCCchhhhhhcCCCCCccccCcCCCCCCCCCCCC-CCccCceeEEEeeccCCCCCceEEEeCCCceeeecccCC--CC
Q 020088 140 YLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRK-HEWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLD--PG 216 (331)
Q Consensus 140 YleTPpYLRK~LFP~~~~Lk~aGlLPPL~~PhH~r~-~~~~~yREGvvv~~~~~~g~~s~VdiGl~~~v~i~~~l~--~g 216 (331)
||||||||||+|||+|++|||||+||||++|||++. ++|++||||+|+++. ++++|||||+.+++.++ +| +|
T Consensus 63 YleTPpYLRK~lFp~~~~Lk~aGlLPpL~~phH~~~~~~~~~yREGvv~~~~---~~~~~VdiGl~~~v~~~--~p~~~g 137 (268)
T 1k3r_A 63 YMDTPQYLRRKVFPIMRELKHVGILPPLRTPHHPTGKPVTGEYRQGLTVKRV---KKGTLVDIGADKLALCR--EKLTVN 137 (268)
T ss_dssp HHHSCHHHHHHHCCCCGGGGGGGGCCCCCCTTSCCSSCCTTCEEEEEEEEEC---SSSEEEESSSSCEEECS--SCCCSS
T ss_pred HhcCChhHhHhhCCCCcCcceecCcCCCCCCCCCCCCCCccceEEEEEEEec---CCceEEEeCCCceEEEe--cCCCCC
Confidence 999999999999999999999999999999999987 899999999999873 56799999999999998 88 99
Q ss_pred cEEEEEecCCCCCCCCCCceecCCCCCCCCCcccceEEEEe--CChHHHhhcCCCCCCCcEEEEeCCCCCCCCCCCCC-C
Q 020088 217 VRVTVAMGTNRNLDADSPRQVVPPSKPKESGMYWGYKVRYA--PNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLT-L 293 (331)
Q Consensus 217 ~RVTV~l~~~~~~~~~~~~~vVsp~~P~~~G~YWGY~VR~a--~sL~~vf~e~p~~~gYD~~IgTS~~G~~i~~~~~~-l 293 (331)
+||||+|++.. ..+.+++|+|+ |+||||+||.| + |+++|++| |||++||||++|.+++ ..+. +
T Consensus 138 ~RVTV~~~~~~---~~~~~~~V~p~-----~~YwGY~Vr~~~~~-l~~v~~~~----gyd~~I~TS~~G~~~~-~~l~~~ 203 (268)
T 1k3r_A 138 RIMSFRVVRLG---KEILIEPDEPE-----DRYWGYEVLDTRRN-LAESLKTV----GADVVVATSRNASPIT-SILDEV 203 (268)
T ss_dssp CEEEEEEEECS---SSCEEEECCCS-----SSCCCCEEEEEEEE-HHHHHHHH----CCSEEEEECTTSCBTT-TSHHHH
T ss_pred cEEEEEecCCC---ccceeEEcCCC-----CCccCeEEEEehhh-HHHHHhhc----CCCeEEEECCCCCCch-hccchh
Confidence 99999998552 33568999887 67999999999 8 99999998 7999999999999886 3221 2
Q ss_pred ----CCCCcEEEEEcCc-ccHHHH
Q 020088 294 ----PTFRHLLIAFGGL-AGLEES 312 (331)
Q Consensus 294 ----~~~khlLIVFGgp-~GLe~~ 312 (331)
.+++|+||||||| +||+++
T Consensus 204 ~~~~~~~~~~liVFG~~~~Gl~~~ 227 (268)
T 1k3r_A 204 KTRMRGAREAAILFGGPYKGLPEI 227 (268)
T ss_dssp HHHHTTCSEEEEECCCSSSCCCSC
T ss_pred hhcccCCCeEEEEECCccccchhh
Confidence 3689999999999 999976
No 2
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=48.24 E-value=8 Score=34.43 Aligned_cols=66 Identities=21% Similarity=0.164 Sum_probs=38.9
Q ss_pred EEEeCChHHHhhcCCC-CCCCcEEEEeCCCCC--CCCCCCC--CC-CCCCcEEEEEcCcccH--HHHHhcCCCC
Q 020088 254 VRYAPNISSVFKNCSY-KGGYDHLIGTSEHGD--IVNSSDL--TL-PTFRHLLIAFGGLAGL--EESIEEDDGL 319 (331)
Q Consensus 254 VR~a~sL~~vf~e~p~-~~gYD~~IgTS~~G~--~i~~~~~--~l-~~~khlLIVFGgp~GL--e~~~~~D~~l 319 (331)
+++++||.+++.+|.- .+..-++||||-+-. .++..++ .+ ...+.++||||-=.|| |+.-..|--|
T Consensus 85 a~vv~sL~eAl~~~~~~~g~~p~vvaTsAr~~~~~i~~~el~~~i~~~~~pvalvFG~~~GLtneel~~cd~~l 158 (192)
T 3dcm_X 85 VKLKSYLEDVLEDIESVEGERPLIFFTSAKKRENDISFEEGRRIIIETEKPVLILLGTGWGLPDEILEISDYVL 158 (192)
T ss_dssp EEEESSHHHHHHHHHHHHSSCCEEEECCSSCCSSCBCHHHHHHHHHHCCSCEEEEECCTTCCCHHHHTTCSEEB
T ss_pred CeEECCHHHHHHHHHhhcCCccEEEEeCCCcCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHhcCEEE
Confidence 6777799999987731 123348999995522 2221111 01 1345799999975677 4444444444
No 3
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0
Probab=47.82 E-value=29 Score=30.04 Aligned_cols=66 Identities=15% Similarity=0.212 Sum_probs=39.5
Q ss_pred EEEeCChHHHhhcCCCCCCCcEEEEeCCCCCCCCCCCCCCCCCCcEEEEEcCc-ccHHHH-Hh--cCCCCcccccc
Q 020088 254 VRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRHLLIAFGGL-AGLEES-IE--EDDGLKVHYLL 325 (331)
Q Consensus 254 VR~a~sL~~vf~e~p~~~gYD~~IgTS~~G~~i~~~~~~l~~~khlLIVFGgp-~GLe~~-~~--~D~~l~~~~~~ 325 (331)
+....++.+.+..+ ||.++.++.....++.+ ..++....+.||||+= .||-.. ++ .|..+...-.+
T Consensus 73 i~~~~~l~~~l~~l----g~~i~~~~~~~~~~~~~--~~~~~~~~~alV~G~E~~GLs~~~l~~~~d~~v~IPm~g 142 (182)
T 3l8u_A 73 VHFYDSLNDFMNIC----SGKLHLITKFANKTYSD--ENYDDSEHHYFLFGREDKGLPEEFMRQHSEKALRIPVND 142 (182)
T ss_dssp EEEESSHHHHHHHC----CSEEEEECSSCSSBGGG--SCCCSSSCEEEEECBTTTBSCHHHHHHTGGGEEBCCCCT
T ss_pred eEEcCCHHHHHHHC----CCEEEEEEcCCCccccc--cccCCCCCEEEEECCccCCCCHHHHHHhCCeEEEECCCC
Confidence 34445788888877 67655554433234432 2333334799999997 999654 32 47666555444
No 4
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=42.56 E-value=2.9 Score=36.32 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=35.9
Q ss_pred CcEEEEeCCCCCCCCCCCCC--C-----CCCCcEEEEEcCcccHHHHHh--cCCCCcc
Q 020088 273 YDHLIGTSEHGDIVNSSDLT--L-----PTFRHLLIAFGGLAGLEESIE--EDDGLKV 321 (331)
Q Consensus 273 YD~~IgTS~~G~~i~~~~~~--l-----~~~khlLIVFGgp~GLe~~~~--~D~~l~~ 321 (331)
-|++|.-.++|+.+++.++. + ...+++.+|+||+.||.+.+. +|..|..
T Consensus 74 ~~~vI~LD~~Gk~~sS~~fA~~l~~~~~~g~~~i~FvIGG~~Gl~~~v~~rA~~~lSl 131 (163)
T 4fak_A 74 QSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQRSNYALSF 131 (163)
T ss_dssp TSEEEEEEEEEEECCHHHHHHHHHHHHHTTCCEEEEEECBTTBCCHHHHHHCSEEEES
T ss_pred CCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCcceEEEEECCCccCHHHHHhcCceEEE
Confidence 36788889999999875432 1 134689999999999999876 4444443
No 5
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Probab=42.33 E-value=14 Score=32.12 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=25.8
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEcC
Q 020088 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDN 105 (331)
Q Consensus 71 IlsnaqslelkT~~agqIARAaaIF~VdEIVVydd 105 (331)
+|++.+++. =+|-|+|+|..|+|+.|++-..
T Consensus 26 vLd~~~dp~----NlGaI~Rta~a~G~~~v~l~~~ 56 (194)
T 1v2x_A 26 LLENVHKPH----NLSAILRTCDAVGVLEAHAVNP 56 (194)
T ss_dssp EEESCCCHH----HHHHHHHHHHHHTBSEEEEESG
T ss_pred EEeCCCCcC----hHHHHHHHHHHhCCCEEEEeCC
Confidence 467777764 6899999999999999999754
No 6
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.30A {Bordetella pertussis}
Probab=41.90 E-value=15 Score=31.19 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=25.9
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEcCC
Q 020088 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNK 106 (331)
Q Consensus 71 IlsnaqslelkT~~agqIARAaaIF~VdEIVVydd~ 106 (331)
+|++.+++ .=+|-|+|+|.-|+++.|++-...
T Consensus 14 vL~~~~dp----~N~Gai~Rta~a~G~~~l~lv~~~ 45 (173)
T 3kty_A 14 IMTQPSHP----GNVGSAARAIKTMGFGELVLVAPR 45 (173)
T ss_dssp EEESCCCH----HHHHHHHHHHHHTTCCCEEEESCS
T ss_pred EEeCCCCC----CcHHHHHHHHHHcCCCEEEEeCCC
Confidence 45666665 468999999999999999997543
No 7
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=40.60 E-value=16 Score=31.59 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=24.4
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEE
Q 020088 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVF 103 (331)
Q Consensus 71 IlsnaqslelkT~~agqIARAaaIF~VdEIVVy 103 (331)
++++.+++ .=+|-|+|+|..|+++.|+|-
T Consensus 30 vLd~i~dp----~NlGaI~Rta~a~G~~~vil~ 58 (184)
T 2ha8_A 30 VASLIDKP----TNLGGLCRTCEVFGASVLVVG 58 (184)
T ss_dssp ECTTCCCH----HHHHHHHHHHHHTTCSEEEES
T ss_pred EEcCCCCC----CcHHHHHHHHHHhCCCEEEEC
Confidence 46777776 468999999999999999874
No 8
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004, methylase family protein, haemophilus influenzae R structural genomics; 2.01A {Haemophilus influenzae}
Probab=39.43 E-value=18 Score=32.99 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=26.0
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEcCC
Q 020088 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNK 106 (331)
Q Consensus 71 IlsnaqslelkT~~agqIARAaaIF~VdEIVVydd~ 106 (331)
||.+.+++. =+|-|||+|.-|+++.|++-+..
T Consensus 11 VL~~~~dP~----NiGai~Rta~a~G~~~l~lv~p~ 42 (244)
T 3ilk_A 11 VLIETSHSG----NIGSAARAMKTMGLTQLCLVSPK 42 (244)
T ss_dssp EEESCCSHH----HHHHHHHHHHHHTCCEEEEESCS
T ss_pred EEECCCCcC----hHHHHHHHHHHhCCCEEEEECCC
Confidence 455666653 68999999999999999998655
No 9
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus}
Probab=39.34 E-value=15 Score=32.56 Aligned_cols=31 Identities=13% Similarity=0.136 Sum_probs=26.2
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEcC
Q 020088 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDN 105 (331)
Q Consensus 71 IlsnaqslelkT~~agqIARAaaIF~VdEIVVydd 105 (331)
+|++.+++. =+|-|+|+|..|+|+.|++-..
T Consensus 29 vLd~i~dp~----NlGaI~Rta~a~G~~~v~lv~~ 59 (211)
T 1zjr_A 29 FADNVKNEH----NFSAIVRTCDAVGVLYLYYYHA 59 (211)
T ss_dssp EEESCCCHH----HHHHHHHHHHHHTEEEEEEECS
T ss_pred EEECCCCcC----cHHHHHHHHHHhCCCEEEEeCC
Confidence 467777764 6899999999999999999754
No 10
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=33.83 E-value=5.4 Score=34.73 Aligned_cols=49 Identities=22% Similarity=0.396 Sum_probs=35.4
Q ss_pred cEEEEeCCCCCCCCCCCCC-------CCCCCcEEEEEcCcccHHHHHh--cCCCCccc
Q 020088 274 DHLIGTSEHGDIVNSSDLT-------LPTFRHLLIAFGGLAGLEESIE--EDDGLKVH 322 (331)
Q Consensus 274 D~~IgTS~~G~~i~~~~~~-------l~~~khlLIVFGgp~GLe~~~~--~D~~l~~~ 322 (331)
+++|.-.++|+.+++.++. .....++.+|+||+.||.+.+. +|..|...
T Consensus 71 ~~vI~LD~~Gk~~sS~~fA~~l~~~~~~G~~~i~FvIGGa~Gl~~~v~~rA~~~lSlS 128 (167)
T 1to0_A 71 AHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDTVMKRADEKLSFS 128 (167)
T ss_dssp SEEEEEEEEEEECCHHHHHHHHHHHHTTTCCEEEEEECCSSCCCHHHHHHCSEEEESC
T ss_pred CEEEEEcCCCCcCCHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHhhCcEEEcc
Confidence 6688888999999875432 1223589999999999998875 45544443
No 11
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
Probab=33.54 E-value=28 Score=31.67 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=39.0
Q ss_pred EEEeCChHHHhhcCCCCCCCcEEEEeCCCCCCCCCCCCCC-----------CCCCcEEEEEcCc-ccHHHHHh--cCCCC
Q 020088 254 VRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTL-----------PTFRHLLIAFGGL-AGLEESIE--EDDGL 319 (331)
Q Consensus 254 VR~a~sL~~vf~e~p~~~gYD~~IgTS~~G~~i~~~~~~l-----------~~~khlLIVFGgp-~GLe~~~~--~D~~l 319 (331)
+++..+|.+.+.+| .++||||.++..+....... ...+.+.||||.= .||-...- .|..+
T Consensus 61 ~~~~~~l~eal~~~------~~v~att~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~aLVfG~E~~GLs~e~l~~~d~~v 134 (249)
T 3onp_A 61 AGLFPTVAEAIRDC------DYVFATTARGRELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLENEDVALANAIV 134 (249)
T ss_dssp CEEESSHHHHHTTC------SEEEEEESSCCCSSSCEECHHHHHHHHHHHHHTTCCEEEEECCTTTCCCHHHHTTSSEEE
T ss_pred EEEeCCHHHHHHhC------CeEEEEcCCCCCCCcccCCHHHHHHHHHHhhccCCCEEEEECCCcCCCCHHHHHhCCeEE
Confidence 45556899999866 57999998776554322110 0134799999997 89865443 34444
Q ss_pred c
Q 020088 320 K 320 (331)
Q Consensus 320 ~ 320 (331)
.
T Consensus 135 ~ 135 (249)
T 3onp_A 135 T 135 (249)
T ss_dssp E
T ss_pred E
Confidence 3
No 12
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
Probab=32.86 E-value=23 Score=32.32 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=26.0
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEcCC
Q 020088 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNK 106 (331)
Q Consensus 71 IlsnaqslelkT~~agqIARAaaIF~VdEIVVydd~ 106 (331)
||++.+++. =+|-|||+|.-|+++.+++-+..
T Consensus 8 VL~~~~dP~----NiGai~Rta~a~G~~~l~Lv~p~ 39 (249)
T 3onp_A 8 ILVRPQMGE----NIGAAARAMLNFGLGRLRIVDPR 39 (249)
T ss_dssp EEESCCCHH----HHHHHHHHHHHTTCCCEEEESCT
T ss_pred EEeCCCCCC----hHHHHHHHHHHcCCCEEEEeCCC
Confidence 456666654 58999999999999999998654
No 13
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} SCOP: c.116.1.1 PDB: 3n4k_A* 1mxi_A* 1j85_A*
Probab=30.89 E-value=26 Score=29.68 Aligned_cols=30 Identities=10% Similarity=0.088 Sum_probs=22.1
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEcC
Q 020088 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDN 105 (331)
Q Consensus 71 IlsnaqslelkT~~agqIARAaaIF~VdEIVVydd 105 (331)
+|++.+++. =+|-|+|+|..|+++ .||...
T Consensus 8 vL~~~~dp~----NlGaI~Rta~a~G~~-~viv~~ 37 (165)
T 3n4j_A 8 VLFEPEIPP----NTGNIIRLCANTGCQ-LHLIKP 37 (165)
T ss_dssp EEESCCCHH----HHHHHHHHHHHHTCE-EEEESC
T ss_pred EEeCCCCCC----cHHHHHHHHHHcCCe-EEEECC
Confidence 456666653 589999999999995 445544
No 14
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0
Probab=29.98 E-value=27 Score=30.23 Aligned_cols=28 Identities=18% Similarity=0.199 Sum_probs=22.2
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEE
Q 020088 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVV 102 (331)
Q Consensus 71 IlsnaqslelkT~~agqIARAaaIF~VdEIVV 102 (331)
+|++.+++. =+|-|+|+|..|+++-|+|
T Consensus 21 vLd~v~dP~----NlGaI~Rta~afG~~~viv 48 (182)
T 3l8u_A 21 VLFQPQIPA----NTGNIARTCAATNTSLHII 48 (182)
T ss_dssp EEESCCCHH----HHHHHHHHHHHHTCEEEEE
T ss_pred EEeCCCCcC----cHHHHHHHHHHcCCcEEEE
Confidence 457777764 6899999999999965554
No 15
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} SCOP: c.116.1.0
Probab=28.37 E-value=30 Score=29.02 Aligned_cols=31 Identities=6% Similarity=0.084 Sum_probs=23.1
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEcCC
Q 020088 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNK 106 (331)
Q Consensus 71 IlsnaqslelkT~~agqIARAaaIF~VdEIVVydd~ 106 (331)
+|++.+++. =+|-|+|+|..|+++ .||....
T Consensus 9 vLd~i~dp~----NlGaI~Rta~a~G~~-~viv~~~ 39 (160)
T 3e5y_A 9 VLVEPEIPP----NTGNVIRLCANTGAR-LHLIEPL 39 (160)
T ss_dssp EEESCCCHH----HHHHHHHHHHHHTCE-EEEESSC
T ss_pred EEeCCCCCC----cHHHHHHHHHHcCCc-EEEECCC
Confidence 456777754 689999999999995 5555443
No 16
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis}
Probab=28.18 E-value=31 Score=31.32 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=26.4
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEcCC
Q 020088 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNK 106 (331)
Q Consensus 71 IlsnaqslelkT~~agqIARAaaIF~VdEIVVydd~ 106 (331)
+|++.+++ .=+|-|+|+|..|+|+.|++-...
T Consensus 107 vLd~v~dp----~NlGaI~Rta~a~G~~~vil~~~~ 138 (257)
T 2i6d_A 107 LLDGVQDP----GNVGTILRTADWFGIRHVWLGTGS 138 (257)
T ss_dssp EEESCCCH----HHHHHHHHHHHHHTCCEEEECTTC
T ss_pred EEECCCCc----chHHHHHHHHHHhCCCEEEEcCCC
Confidence 35677775 468999999999999999987654
No 17
>3ic6_A Putative methylase family protein; putative methylase family Pro structural genomics, PSI-2, protein structure initiative; 2.59A {Neisseria gonorrhoeae fa 1090}
Probab=28.13 E-value=34 Score=30.86 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=25.6
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEcCC
Q 020088 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNK 106 (331)
Q Consensus 71 IlsnaqslelkT~~agqIARAaaIF~VdEIVVydd~ 106 (331)
||.+.+++ .=+|-|+|+|.-|+++.|++-...
T Consensus 21 VLd~~~dP----~NiGaI~Rta~afG~~~l~Lv~p~ 52 (223)
T 3ic6_A 21 ILTRTSHP----ANIGSAARAMKTMGLHRLTIVTPN 52 (223)
T ss_dssp EEESCCCH----HHHHHHHHHHHHTTCCCEEEESCC
T ss_pred EEeCCCCC----ChHHHHHHHHHHcCCCEEEEeCCC
Confidence 34566665 468999999999999999998654
No 18
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=27.12 E-value=47 Score=29.39 Aligned_cols=25 Identities=16% Similarity=0.208 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhhcccEEEEEcCC
Q 020088 82 TRLAGQIARAVTIFRIDEVVVFDNK 106 (331)
Q Consensus 82 T~~agqIARAaaIF~VdEIVVydd~ 106 (331)
.+-+|.||||+.-|++++.++-...
T Consensus 28 n~dihdiARamkt~Gl~~l~LV~P~ 52 (192)
T 3dcm_X 28 NLDVHDIARTARTYNLKGYYIVTNL 52 (192)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred cccHHHHHHHHHhcCCceEEEECCc
Confidence 4668999999999999999999654
No 19
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=26.53 E-value=35 Score=31.40 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=25.8
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEcC
Q 020088 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDN 105 (331)
Q Consensus 71 IlsnaqslelkT~~agqIARAaaIF~VdEIVVydd 105 (331)
+|++.+++ .=+|-|+|+|..|+|+.|++-..
T Consensus 120 vLd~i~dp----~NlGaI~Rta~a~G~~~vil~~~ 150 (274)
T 1ipa_A 120 VAVGLEKP----GNLGAVLRSADAAGAEAVLVAGG 150 (274)
T ss_dssp EEESCCCH----HHHHHHHHHHHHHTCSEEEEESC
T ss_pred EEeCCCCc----chHHHHHHHHHhhccCEEEEeCC
Confidence 35667775 46899999999999999999866
No 20
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=26.28 E-value=36 Score=30.86 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=24.6
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEcC
Q 020088 72 IDNTQSLELATRLAGQIARAVTIFRIDEVVVFDN 105 (331)
Q Consensus 72 lsnaqslelkT~~agqIARAaaIF~VdEIVVydd 105 (331)
|++.+++ .=+|-|+|+|..|+|+.||+-.+
T Consensus 110 Ld~v~dp----~NlGaI~Rta~a~G~~~vil~~~ 139 (253)
T 1gz0_A 110 LDGVTDP----HNLGACLRSADAAGVHAVIVPKD 139 (253)
T ss_dssp EESCCCH----HHHHHHHHHHHHHTCSEEEEESS
T ss_pred EeCCCCc----CcHHHHHHHHHHhCCCEEEEeCC
Confidence 4666665 46899999999999999988654
No 21
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=26.19 E-value=5.7 Score=34.15 Aligned_cols=49 Identities=16% Similarity=0.325 Sum_probs=34.4
Q ss_pred cEEEEeCCCCCCCCCCCCC--CC----CCCcEEEEEcCcccHHHHHh--cCCCCccc
Q 020088 274 DHLIGTSEHGDIVNSSDLT--LP----TFRHLLIAFGGLAGLEESIE--EDDGLKVH 322 (331)
Q Consensus 274 D~~IgTS~~G~~i~~~~~~--l~----~~khlLIVFGgp~GLe~~~~--~D~~l~~~ 322 (331)
+.+|.-.++|+.+++.++. +. ...++.+|+||+.||.+.+. +|..|...
T Consensus 67 ~~vi~Ld~~Gk~~sS~~fA~~l~~~~~~g~~i~FvIGG~~Gl~~~v~~rA~~~lSlS 123 (155)
T 1ns5_A 67 NRIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLIGGPEGLSPACKAAAEQSWSLS 123 (155)
T ss_dssp SEEEEEEEEEECCCHHHHHHHHHHHHHHCSCEEEEECBTTBCCHHHHHHCSEEECCC
T ss_pred CcEEEEcCCCCcCCHHHHHHHHHHHHhcCCeEEEEEECCCCCCHHHHHhhCceEEcc
Confidence 3578888999999875432 11 12689999999999998776 45444443
No 22
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=25.18 E-value=5.2 Score=34.76 Aligned_cols=42 Identities=26% Similarity=0.418 Sum_probs=31.7
Q ss_pred cEEEEeCCCCCCCCCCCCC--CC----CCCcEEEEEcCcccHHHHHhc
Q 020088 274 DHLIGTSEHGDIVNSSDLT--LP----TFRHLLIAFGGLAGLEESIEE 315 (331)
Q Consensus 274 D~~IgTS~~G~~i~~~~~~--l~----~~khlLIVFGgp~GLe~~~~~ 315 (331)
+++|.-.++|+.+++.++. +. ...++.+|+||+.||.+.+.+
T Consensus 66 ~~vI~LD~~Gk~~sS~~fA~~l~~~~~~G~~i~FvIGGa~Gl~~~v~~ 113 (163)
T 1o6d_A 66 SFVMVMDKRGEEVSSEEFADFLKDLEMKGKDITILIGGPYGLNEEIFA 113 (163)
T ss_dssp CEEEEEEEEEEECCHHHHHHHHHHHHHHTCCEEEEECCTTCCCGGGGG
T ss_pred CEEEEEcCCCCcCCHHHHHHHHHHHHhcCCeEEEEEECCCCCCHHHHH
Confidence 5688888999999875432 11 126899999999999987764
No 23
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=25.04 E-value=38 Score=31.34 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=25.6
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEcCC
Q 020088 72 IDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNK 106 (331)
Q Consensus 72 lsnaqslelkT~~agqIARAaaIF~VdEIVVydd~ 106 (331)
|++.+++ .=+|-|+|+|..|+|+.||+-...
T Consensus 131 Ld~i~dP----~NlGaIiRta~a~G~~~vil~~~~ 161 (287)
T 1x7o_A 131 FDRPTSP----GNIGSIIRSADALGAHGLIVAGHA 161 (287)
T ss_dssp EESCSCH----HHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EeCCCCc----chHHHHHHHhHhcccCEEEEECCC
Confidence 4566665 468999999999999999998664
No 24
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=23.25 E-value=44 Score=30.82 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=24.8
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEc
Q 020088 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFD 104 (331)
Q Consensus 71 IlsnaqslelkT~~agqIARAaaIF~VdEIVVyd 104 (331)
+|++.+++ .=+|-|+|+|.-|+|+.|++-.
T Consensus 123 vLd~v~dP----~NlGaI~Rta~a~G~~~vil~~ 152 (277)
T 3nk6_A 123 VLDGVKIV----GNIGAIVRTSLALGAAGIVLVD 152 (277)
T ss_dssp EEESCCCH----HHHHHHHHHHHHTTCSEEEEES
T ss_pred EEEcCCCc----chHHHHHHHHHHcCCCEEEEcC
Confidence 34566665 3589999999999999999987
No 25
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004, methylase family protein, haemophilus influenzae R structural genomics; 2.01A {Haemophilus influenzae}
Probab=20.90 E-value=60 Score=29.47 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=42.1
Q ss_pred cccceEEEEeCChHHHhhcCCCCCCCcEEEEeCCCCCCCCCCCCC--------CCCCCcEEEEEcCc-ccHHHHHh--cC
Q 020088 248 MYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLT--------LPTFRHLLIAFGGL-AGLEESIE--ED 316 (331)
Q Consensus 248 ~YWGY~VR~a~sL~~vf~e~p~~~gYD~~IgTS~~G~~i~~~~~~--------l~~~khlLIVFGgp-~GLe~~~~--~D 316 (331)
.||- .+++.++|.+.+.+| ..+|||+-++..+...... ......+.||||.= .||-..+- .|
T Consensus 57 ~~l~-~~~~~~~l~eal~~~------~~vvatt~~~~~~~~~~~~p~~~~~~~~~~~~~~aLVfG~E~~GLs~e~l~~~d 129 (244)
T 3ilk_A 57 NIVK-NARVVDSFDEAVDDC------SLVIGTSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNEELLKCH 129 (244)
T ss_dssp HHHH-HCEEESSHHHHTTTC------SEEEEECCCCGGGTTTEECHHHHHHHHHHCSSCEEEEECBTTTBCCHHHHHTCS
T ss_pred heec-eeEEeCCHHHHHHhC------CeEEEEccCCCCCCcccCCHHHHHHHHhhcCCCEEEEECCCCCCCCHHHHHhCC
Confidence 3665 245567899999876 3799999876644321100 00135799999996 89865433 45
Q ss_pred CCCccc
Q 020088 317 DGLKVH 322 (331)
Q Consensus 317 ~~l~~~ 322 (331)
..+...
T Consensus 130 ~~v~IP 135 (244)
T 3ilk_A 130 YHLNIP 135 (244)
T ss_dssp EEECCC
T ss_pred eEEEec
Confidence 544433
No 26
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} SCOP: c.116.1.0
Probab=20.25 E-value=82 Score=26.28 Aligned_cols=67 Identities=9% Similarity=0.142 Sum_probs=40.8
Q ss_pred EEEeCChHHHhhcCCCCCCCcEEEEeCCCCC-CCCCCCCCCCCCCcEEEEEcCc-ccHHHH-Hhc---CCCCccccccc
Q 020088 254 VRYAPNISSVFKNCSYKGGYDHLIGTSEHGD-IVNSSDLTLPTFRHLLIAFGGL-AGLEES-IEE---DDGLKVHYLLK 326 (331)
Q Consensus 254 VR~a~sL~~vf~e~p~~~gYD~~IgTS~~G~-~i~~~~~~l~~~khlLIVFGgp-~GLe~~-~~~---D~~l~~~~~~~ 326 (331)
++...++.+.+..+.- .|| .+|+|+.+|. ++.+ ... .+.+.||||+= .||-.. ++. |..+...-.+.
T Consensus 61 ~~~~~~l~~~l~~l~~-~g~-~i~~~~~~~~~~~~~--~~~--~~~~alv~G~E~~Gls~~~l~~~~~d~~v~IPm~g~ 133 (160)
T 3e5y_A 61 MRVHRDWDAFVAAEAP-DPA-RMFAFTTRGSGRFHD--RAF--EPGDWFVFGAETRGLAPALVDRFAPEQRVRLPMRPG 133 (160)
T ss_dssp CEEESSHHHHHHHHCC-CGG-GEEEECSTTCEEGGG--SCC--CTTCEEEEEBTTTBSCHHHHTTSCGGGEEECCCCSS
T ss_pred eEEeCCHHHHHHHHHh-CCC-EEEEEecCCCccccc--cCC--CCCEEEEECCCcCCCCHHHHhhccCCeEEEEcCCCC
Confidence 5555689999887642 355 4778776664 3322 222 24789999997 999554 443 55554443333
Done!