BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020090
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VE3|A Chain A, Retinoic Acid Bound Cyanobacterial Cyp120a1
pdb|2VE3|B Chain B, Retinoic Acid Bound Cyanobacterial Cyp120a1
pdb|2VE4|A Chain A, Substrate Free Cyanobacterial Cyp120a1
pdb|2VE4|B Chain B, Substrate Free Cyanobacterial Cyp120a1
Length = 444
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 124/259 (47%), Gaps = 13/259 (5%)
Query: 51 LPLGTLGWPIVGESLEFISCALTDRPESFMDKRRCMYGKVFKSHIFGTPTIVSTDAEVSK 110
+P G G P +GE+L F++ F KR+ +G +FK+ +FG I + A ++
Sbjct: 13 IPPGDFGLPWLGETLNFLNDG------DFGKKRQQQFGPIFKTRLFGKNVIFISGALANR 66
Query: 111 FVLQSDAKAFVPFYPKSLTELMGKSSILLINGGLQRRIHGLIGSFFKSADLKAQITRDME 170
F+ + + F +P S L+G +++ G + R ++ F L + + + M+
Sbjct: 67 FLFTKEQETFQATWPLSTRILLGPNALATQMGEIHRSRRKILYQAFLPRTLDSYLPK-MD 125
Query: 171 KYIHKSMENWMQDQPIYIQDESKNIAFQVLVKALINLDPGEQMEILKKQFQEFISGLMSL 230
+ +E W + + + + + F V + + Q L F+ +I GL SL
Sbjct: 126 GIVQGYLEQWGKANEVIWYPQLRRMTFDVAATLFMG-EKVSQNPQLFPWFETYIQGLFSL 184
Query: 231 PINIPGSQLYRSLQAKKKMARLIQEIIQSKRDGGMSNINVPKDVIDVLM-MNNASDQPLT 289
PI +P + +S +A+ + +++II++++ S +D + +L+ + ++QPL+
Sbjct: 185 PIPLPNTLFGKSQRARALLLAELEKIIKARQQQPPSE----EDALGILLAARDDNNQPLS 240
Query: 290 DDLIADNMIDMMIPGEDSV 308
+ D ++ ++ G +++
Sbjct: 241 LPELKDQILLLLFAGHETL 259
>pdb|3DBG|A Chain A, Crystal Structure Of Cytochrome P450 170a1 (Cyp170a1) From
Streptomyces Coelicolor
pdb|3DBG|B Chain B, Crystal Structure Of Cytochrome P450 170a1 (Cyp170a1) From
Streptomyces Coelicolor
pdb|3EL3|A Chain A, Distinct Monooxygenase And Farnesene Synthase Active Sites
In Cytochrome P450 170a1
pdb|3EL3|B Chain B, Distinct Monooxygenase And Farnesene Synthase Active Sites
In Cytochrome P450 170a1
Length = 467
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 120/288 (41%), Gaps = 35/288 (12%)
Query: 49 GQLPLGTLGWPIVGESLEFISCALTDRPESFMDKRRCMYGKVFKSHIFGTPTIVSTDAEV 108
G +PL GW + + L F+S L D +G V + + T+ E+
Sbjct: 29 GGVPLLGHGWRLARDPLAFMS-QLRD------------HGDVVRIKLGPKTVYAVTNPEL 75
Query: 109 S-KFVLQSDAKAFVPFYPKSLTELMGKSSILLINGGLQRRIHGLIGSFFKSADLKAQITR 167
+ L D P + +SL L+GK + NG L RR I F+ + A
Sbjct: 76 TGALALNPDYHIAGPLW-ESLEGLLGKEGVATANGPLHRRQRRTIQPAFRLDAIPA-YGP 133
Query: 168 DMEKYIHKSMENWMQDQPIYIQDESKNIAFQVLVKALIN---LDPGEQMEILKKQFQEFI 224
ME+ H E W + + ES +A +V + L+ +D E+ E L
Sbjct: 134 IMEEEAHALTERWQPGKTVDATSESFRVAVRVAARCLLRGQYMD--ERAERLCVALATVF 191
Query: 225 SGLMSLPINIPGSQLYR-SLQAKKK-------MARLIQEIIQSKRDGGMSNINVPKDVID 276
G+ + +P LYR L A ++ + L+ EII +R G P D++
Sbjct: 192 RGMYRRMV-VPLGPLYRLPLPANRRFNDALADLHLLVDEIIAERRASGQK----PDDLLT 246
Query: 277 VLM-MNNASDQPLTDDLIADNMIDMMIPGEDSVPVLMTLAVKYLSDYP 323
L+ + + P+ + I D ++ ++ PG +++ + ++ L+D+P
Sbjct: 247 ALLEAKDDNGDPIGEQEIHDQVVAILTPGSETIASTIMWLLQALADHP 294
>pdb|1PZD|A Chain A, Structural Identification Of A Conserved Appendage Domain
In The Carboxyl-terminus Of The Copi Gamma-subunit
Length = 322
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 152 IGSFFKSADLKAQITRDMEKYIHKSMENWMQDQPIYIQDESKNIAFQVLVKALINLDPGE 211
+G FKS+ +T +Y+ + ++ D ++ D + + Q L + ++P E
Sbjct: 74 LGPLFKSSPEPVALTESETEYVIRCTKHTFTDHMVFQFDCTNTLNDQTLENVTVQMEPSE 133
Query: 212 QMEILKKQFQEFISGLMSLPINIPGS 237
E+L ++ SLP N PG+
Sbjct: 134 AYEVLC-----YVPA-RSLPYNQPGT 153
>pdb|1R4X|A Chain A, Crystal Structure Analys Of The Gamma-Copi Appendage
Domain
Length = 275
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 152 IGSFFKSADLKAQITRDMEKYIHKSMENWMQDQPIYIQDESKNIAFQVLVKALINLDPGE 211
+G FKS+ +T +Y+ + ++ + ++ D + + Q L + ++P E
Sbjct: 27 LGPLFKSSPEPVALTESETEYVIRCTKHTFTNHMVFQFDCTNTLNDQTLENVTVQMEPTE 86
Query: 212 QMEILKKQFQEFISGLMSLPINIPGS 237
E+L ++ SLP N PG+
Sbjct: 87 AYEVLX-----YVPA-RSLPYNQPGT 106
>pdb|3LD6|A Chain A, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(C Complex With Ketoconazole
pdb|3LD6|B Chain B, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(C Complex With Ketoconazole
pdb|3JUS|A Chain A, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(Cyp51) In Complex With Econazole
pdb|3JUS|B Chain B, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(Cyp51) In Complex With Econazole
pdb|3JUV|A Chain A, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(C
Length = 461
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 55/275 (20%), Positives = 110/275 (40%), Gaps = 31/275 (11%)
Query: 51 LPLGTLGWPIVGESLEFISCALT--DRPESFMDKRRCMYGKVFKSHIFGTP--TIVSTDA 106
LP G P + + F+ A+ P F++ YG VF + G ++ +DA
Sbjct: 6 LPAGVKSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDA 65
Query: 107 EVSKFVLQSDAKAFVPFYPKSLTELMGKSSILLINGGLQRRIHGLIGSFFKSADLKAQIT 166
F +++ Y + T + GK + + ++ S A K ++
Sbjct: 66 AALLFNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFKQHVS 125
Query: 167 RDMEKYIHKSMENWMQDQPIYIQDESKNIAFQVLVKALI-NLDPGEQMEILKKQFQEFIS 225
+EK + E+W + KN+ F+ L + +I + ++ Q E ++
Sbjct: 126 -IIEKETKEYFESWGESG-------EKNV-FEALSELIILTASHCLHGKEIRSQLNEKVA 176
Query: 226 GLMS------------LPINIPGSQLYRSLQAKKKMARLIQEIIQSKRDGGMSNINVPKD 273
L + LP +P R +A +++ + + IQ +R I+ D
Sbjct: 177 QLYADLDGGFSHAAWLLPGWLPLPSFRRRDRAHREIKDIFYKAIQKRRQS-QEKID---D 232
Query: 274 VIDVLMMNNASD-QPLTDDLIADNMIDMMIPGEDS 307
++ L+ D +PLTDD +A +I +++ G+ +
Sbjct: 233 ILQTLLDATYKDGRPLTDDEVAGMLIGLLLAGQHT 267
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 52 PLGTLGWPIVGESLEFISCALTDRPESFMDKRRCMYGKVFKSHIFGTPTIV 102
P G GWP++G L L P + + YG V + I TP +V
Sbjct: 13 PPGPWGWPLIGHML-----TLGKNPHLALSRMSQQYGDVLQIRIGSTPVVV 58
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 39/175 (22%)
Query: 162 KAQITRDMEKYIHKSMENWMQDQPIYI-------QDE---SKNIAFQVLVKALINLDPGE 211
K QI R EK + +EN + P I +DE K+ A+ V+ + L + +
Sbjct: 434 KDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAV---Q 490
Query: 212 QMEILKKQ-FQEF-----ISGLMSLPINIPGSQLYRSLQAKKKMARLIQEIIQSKRDGGM 265
L++Q EF + + SLP+ G + KK R + + S+ G
Sbjct: 491 VRRFLREQGIAEFKLPDRVECVDSLPLTAVG-------KVDKKQLR---QWLASRASAGR 540
Query: 266 SNINVPKDVID--VLMMNNASDQPLTDDLIADNMIDMMIPGEDSVPVLMTLAVKY 318
++I K + +L + + SD+P D DN+ID G DSV +M LA ++
Sbjct: 541 ASIPASKAALREVILPLLDESDEPFDD----DNLIDY---GLDSV-RMMALAARW 587
>pdb|3QI8|B Chain B, Evolved Variant Of Cytochrome P450 (Bm3, Cyp102a1)
pdb|3QI8|A Chain A, Evolved Variant Of Cytochrome P450 (Bm3, Cyp102a1)
Length = 472
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 247 KKMARLIQEIIQSKRDGGMSNINVPKDVIDVLMMNN--ASDQPLTDDLIADNMIDMMIPG 304
K M L+ +II ++ G + D++ ++ + +PL D+ I +I +I G
Sbjct: 211 KVMNDLVDKIIADRKASGEQS----DDLLTHMLHGKDPETGEPLDDENIRYQIITFLIAG 266
Query: 305 EDSVPVLMTLAVKYLSDYPAALQQ 328
++ L+T A+ +L P LQ+
Sbjct: 267 HETTSGLLTFALYFLVKNPHVLQK 290
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 49 GQLPLGTLGWPIVGESLEFISCALTDRPESFMDKRRCMYGKVFKSHIFGTPTIVSTDAEV 108
G+LP G P++G L+ L SF+ + R YG VF ++ P +V +
Sbjct: 9 GKLPPGPSPLPVLGNLLQMDRKGLL---RSFL-RLREKYGDVFTVYLGSRPVVVLCGTDA 64
Query: 109 SKFVLQSDAKAF 120
+ L A+AF
Sbjct: 65 IREALVDQAEAF 76
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 49 GQLPLGTLGWPIVGESLEFISCALTDRPESFMDKRRCMYGKVFKSHIFGTPTIVSTDAEV 108
G+LP G P++G L+ L SF+ + R YG VF ++ P +V +
Sbjct: 9 GKLPPGPSPLPVLGNLLQMDRKGLL---RSFL-RLREKYGDVFTVYLGSRPVVVLCGTDA 64
Query: 109 SKFVLQSDAKAF 120
+ L A+AF
Sbjct: 65 IREALVDQAEAF 76
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 49 GQLPLGTLGWPIVGESLEFISCALTDRPESFMDKRRCMYGKVFKSHIFGTPTIVSTDAEV 108
G+LP G P++G L+ L SF+ + R YG VF ++ P +V +
Sbjct: 9 GKLPPGPSPLPVLGNLLQMDRKGLL---RSFL-RLREKYGDVFTVYLGSRPVVVLCGTDA 64
Query: 109 SKFVLQSDAKAF 120
+ L A+AF
Sbjct: 65 IREALVDQAEAF 76
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 49 GQLPLGTLGWPIVGESLEFISCALTDRPESFMDKRRCMYGKVFKSHIFGTPTIVSTDAEV 108
G+LP G P++G L+ L SF+ + R YG VF ++ P +V +
Sbjct: 9 GKLPPGPSPLPVLGNLLQMDRKGLL---RSFL-RLREKYGDVFTVYLGSRPVVVLCGTDA 64
Query: 109 SKFVLQSDAKAF 120
+ L A+AF
Sbjct: 65 IREALVDQAEAF 76
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 49 GQLPLGTLGWPIVGESLEFISCALTDRPESFMDKRRCMYGKVFKSHIFGTPTIVSTDAEV 108
G+LP G P++G L+ L SF+ + R YG VF ++ P +V +
Sbjct: 9 GKLPPGPSPLPVLGNLLQMDRKGLL---RSFL-RLREKYGDVFTVYLGSRPVVVLCGTDA 64
Query: 109 SKFVLQSDAKAF 120
+ L A+AF
Sbjct: 65 IREALVDQAEAF 76
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 49 GQLPLGTLGWPIVGESLEF----ISCALTDRPESFMDKRRCMYGKVFKSHIFGTPTIVST 104
G+LP G +PI+G L+ IS +LT E YG VF ++ PT+V
Sbjct: 9 GKLPPGPTPFPIIGNILQIDAKDISKSLTKFSEC--------YGPVFTVYLGMKPTVVLH 60
Query: 105 DAEVSKFVL 113
E K L
Sbjct: 61 GYEAVKEAL 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,296,617
Number of Sequences: 62578
Number of extensions: 314542
Number of successful extensions: 859
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 849
Number of HSP's gapped (non-prelim): 18
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)