BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020091
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XM6|A Chain A, Crystal Structure Of The Protein Corresponding To Locus
C5321 From Cft073 E.Coli Strain
Length = 490
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 78/174 (44%), Gaps = 10/174 (5%)
Query: 150 MDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVD 209
M K A+ L A++ PA N E+ L Q + +G +AQ +L +G
Sbjct: 1 MKKSLLAVMLTGLFALVSLPALGNVNLEQ----LKQKAESGEAKAQLELGYRYFQGNETT 56
Query: 210 FNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLE 269
+L +A W+ RAAE GY A Y L Y GEG+P + QA W K+AA G +AQ
Sbjct: 57 KDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQN 116
Query: 270 HGLGLFTEGEMMK-----AVVYLELATRAGETAADHVKNVILQQLSATSRDRAM 318
G+ ++ EG +K +V + LA G + + +RD M
Sbjct: 117 LGV-MYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVM 169
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 19/164 (11%)
Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISL 159
EA L G R+ G K+L +A+D F + A +G T A GL Y
Sbjct: 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYM----------- 86
Query: 160 YRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWY 219
+ P + +AV +A++ G +AQ L + H G GV + E+ +W+
Sbjct: 87 --------NGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWF 138
Query: 220 LRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH 263
AAE G + Y G+G+ + AR+W +AA+ G+
Sbjct: 139 RLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGN 182
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 98/215 (45%), Gaps = 23/215 (10%)
Query: 108 GKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQ 162
G R+ +G GV ++ +A+ + K A +G A + G+MY E +DK E+ + +R
Sbjct: 82 GLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAES-VKWFRL 140
Query: 163 AAVLGDPAAQPANAE-----EAVKLLY--------QASIAGHVRAQYQLALCLHRGRGVD 209
AA G + Q + + + V Y +A+ G+V + QL RG GV+
Sbjct: 141 AAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVE 200
Query: 210 FNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLE 269
N +A+WY ++A G + + Y FG G+ + Q+R ++A+ G+ AQ
Sbjct: 201 RNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFR 260
Query: 270 HGL----GLFTEGEMMKAVVYLELATRAGETAADH 300
G GL E +KA+ + + G + +
Sbjct: 261 LGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQY 295
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 20/148 (13%)
Query: 112 KHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA 171
K GV KN ++A+ + K A +G A + G +Y+ + +E
Sbjct: 303 KGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEE----------------- 345
Query: 172 QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAM 231
++AV+ +A+ G AQ+ L L +G+GV + Q+AA W +AAE G A
Sbjct: 346 ---EHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQ 402
Query: 232 YNTSLCYSFGEGLPLSHRQARKWMKRAA 259
Y +G G+ + QA W A+
Sbjct: 403 VQLGEIYYYGLGVERDYVQAWAWFDTAS 430
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 108/272 (39%), Gaps = 60/272 (22%)
Query: 108 GKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKEAAISLYRQ 162
G + G GV +N + + K A G L + MY+ D ++ + L+ Q
Sbjct: 190 GYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRV-LFSQ 248
Query: 163 AAVLGDPAAQ----------PANAEEAVKLL--YQASIA-GHVRAQYQLALCLHRG-RGV 208
+A G+ AQ A A+E +K L Y+ S G+ QY LA +G GV
Sbjct: 249 SAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGV 308
Query: 209 DFNLQEAARWYLRAAEGGYVRAMYNTSLCY---------------------------SF- 240
N ++A WY ++AE G A N Y F
Sbjct: 309 AKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFN 368
Query: 241 -------GEGLPLSHRQARKWMKRAADCGHGKAQLEHG----LGLFTEGEMMKAVVYLEL 289
G+G+ +QA WM++AA+ G AQ++ G GL E + ++A + +
Sbjct: 369 LGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDT 428
Query: 290 A-TRAGETAADHVKNVILQQLSATSRDRAMLV 320
A T +N+ ++L+A +A L+
Sbjct: 429 ASTNDMNLFGTENRNITEKKLTAKQLQQAELL 460
>pdb|1OUV|A Chain A, Helicobacter Cysteine Rich Protein C (Hcpc)
Length = 273
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 62/131 (47%), Gaps = 6/131 (4%)
Query: 166 LGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225
LG + + + +A K +A + L + ++G+GV+ NL++AA +Y +A +
Sbjct: 12 LGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL 71
Query: 226 GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMM---- 281
Y + Y G+G+ + +A ++ +A D + + G G++ +G+++
Sbjct: 72 NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLG-GIYHDGKVVTRDF 130
Query: 282 -KAVVYLELAT 291
KAV Y A
Sbjct: 131 KKAVEYFTKAC 141
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 72/200 (36%), Gaps = 24/200 (12%)
Query: 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE----MDKK 153
L+E G + G+GV KNL KA + K + G +Y+
Sbjct: 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNT 94
Query: 154 EAAISLYRQA---------AVLG----DPAAQPANAEEAVKLLYQASIAGHVRAQYQLAL 200
A+ Y +A A LG D + ++AV+ +A L
Sbjct: 95 NKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGS 154
Query: 201 CLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD 260
GRG +L++A Y +A + +N Y GEG + ++A +A
Sbjct: 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKA-- 212
Query: 261 CGHGKAQLEHGLGLFTEGEM 280
+LE+G G F G M
Sbjct: 213 -----CELENGGGCFNLGAM 227
>pdb|2YXG|A Chain A, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
pdb|2YXG|B Chain B, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
pdb|2YXG|C Chain C, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
pdb|2YXG|D Chain D, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
Length = 289
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 14/113 (12%)
Query: 193 RAQYQLALCLHRGRGVDFN-LQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQA 251
+ Y + + + VDF+ L+E + + G V A+ T GE LSH +
Sbjct: 3 KGVYPAIITPFKNKEVDFDGLEENINFLIENGVSGIV-AVGTT------GESPTLSHEEH 55
Query: 252 RKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNV 304
+K +++ D +G+ Q+ G G E +EL+ A + AD V ++
Sbjct: 56 KKVIEKVVDVVNGRVQVIAGAGSNCTEEA------IELSVFAEDVGADAVLSI 102
>pdb|4AK9|A Chain A, Structure Of Chloroplast Ftsy From Physcomitrella Patens
pdb|4AK9|B Chain B, Structure Of Chloroplast Ftsy From Physcomitrella Patens
Length = 318
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQ 197
LA+VD L YW +D+ E+ + + ++ D P A + V + + +AG +++ Q
Sbjct: 30 LAVVDELLTYWNLDESESILDELEEVLLVSDFG--PKTALKIVDTIRKDILAGRLKSGPQ 87
Query: 198 LALCLHR 204
+ L +
Sbjct: 88 IKEALKK 94
>pdb|2NNA|B Chain B, Structure Of The Mhc Class Ii Molecule Hla-Dq8 Bound With
A Deamidated Gluten Peptide
Length = 207
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 149 EMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLAL 200
E + ++ + +YR LG PAA+ N+++ V +A + R YQL L
Sbjct: 51 EYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLEL 102
>pdb|1JK8|B Chain B, Crystal Structure Of A Human Insulin Peptide-Hla-Dq8
Complex
Length = 190
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 149 EMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLAL 200
E + ++ + +YR LG PAA+ N+++ V +A + R YQL L
Sbjct: 34 EYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLEL 85
>pdb|4GG6|B Chain B, Protein Complex
pdb|4GG6|D Chain D, Protein Complex
Length = 215
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 149 EMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLAL 200
E + ++ + +YR LG PAA+ N+++ V +A + R YQL L
Sbjct: 51 EYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLEL 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.132 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,861,449
Number of Sequences: 62578
Number of extensions: 326906
Number of successful extensions: 662
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 637
Number of HSP's gapped (non-prelim): 14
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)